Query 013281
Match_columns 446
No_of_seqs 534 out of 3155
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0726 26S proteasome regulat 100.0 1E-114 3E-119 812.0 30.0 440 1-446 1-440 (440)
2 COG1222 RPT1 ATP-dependent 26S 100.0 5E-90 1.1E-94 664.7 38.8 396 48-445 10-405 (406)
3 PTZ00361 26 proteosome regulat 100.0 9.5E-84 2.1E-88 659.4 41.2 438 1-446 1-438 (438)
4 KOG0727 26S proteasome regulat 100.0 2E-76 4.4E-81 545.2 30.3 373 62-436 28-400 (408)
5 KOG0728 26S proteasome regulat 100.0 2.3E-68 5E-73 491.2 32.7 374 66-439 18-395 (404)
6 KOG0652 26S proteasome regulat 100.0 8.4E-67 1.8E-71 483.3 27.0 351 90-440 49-420 (424)
7 PTZ00454 26S protease regulato 100.0 1.3E-59 2.8E-64 478.5 40.2 374 63-438 19-392 (398)
8 KOG0729 26S proteasome regulat 100.0 4E-60 8.6E-65 440.0 24.3 329 110-438 92-424 (435)
9 PRK03992 proteasome-activating 100.0 6.7E-55 1.5E-59 445.3 38.7 359 88-446 28-389 (389)
10 KOG0651 26S proteasome regulat 100.0 2.5E-56 5.5E-61 422.6 19.5 341 96-437 38-378 (388)
11 TIGR01242 26Sp45 26S proteasom 100.0 3.7E-53 8E-58 430.0 35.3 343 90-432 21-363 (364)
12 KOG0730 AAA+-type ATPase [Post 100.0 4.6E-53 9.9E-58 434.7 24.5 253 182-437 425-679 (693)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 3.2E-51 6.9E-56 415.6 25.0 259 174-435 494-772 (802)
14 KOG0734 AAA+-type ATPase conta 100.0 7.4E-49 1.6E-53 393.0 20.9 247 185-435 298-544 (752)
15 KOG0736 Peroxisome assembly fa 100.0 2.6E-47 5.6E-52 395.5 24.1 256 180-437 661-937 (953)
16 KOG0731 AAA+-type ATPase conta 100.0 2.5E-46 5.5E-51 395.5 25.1 252 183-435 303-556 (774)
17 KOG0738 AAA+-type ATPase [Post 100.0 5.8E-46 1.3E-50 361.1 21.2 249 182-435 203-472 (491)
18 COG1223 Predicted ATPase (AAA+ 100.0 2.3E-44 5.1E-49 333.8 23.3 301 122-446 66-368 (368)
19 KOG0733 Nuclear AAA ATPase (VC 100.0 5.4E-45 1.2E-49 370.3 20.7 224 187-415 186-414 (802)
20 COG0465 HflB ATP-dependent Zn 100.0 1.5E-44 3.3E-49 376.3 22.5 252 184-436 143-394 (596)
21 TIGR03689 pup_AAA proteasome A 100.0 3.7E-42 8E-47 357.2 33.2 348 85-435 18-481 (512)
22 COG0464 SpoVK ATPases of the A 100.0 1.3E-40 2.8E-45 351.2 24.8 246 184-432 235-483 (494)
23 KOG0735 AAA+-type ATPase [Post 100.0 1.8E-40 3.9E-45 341.8 24.0 228 185-415 661-888 (952)
24 TIGR01243 CDC48 AAA family ATP 100.0 3.6E-40 7.8E-45 362.2 27.2 250 184-435 446-713 (733)
25 TIGR01241 FtsH_fam ATP-depende 100.0 8.8E-40 1.9E-44 344.4 26.3 252 182-434 46-297 (495)
26 KOG0737 AAA+-type ATPase [Post 100.0 5.1E-40 1.1E-44 319.6 20.0 243 187-434 88-361 (386)
27 KOG0739 AAA+-type ATPase [Post 100.0 9.5E-41 2.1E-45 314.9 13.4 228 182-415 124-353 (439)
28 CHL00176 ftsH cell division pr 100.0 9.2E-39 2E-43 341.7 25.5 251 184-435 176-426 (638)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 2E-37 4.3E-42 322.2 25.8 242 185-434 222-465 (489)
30 PRK10733 hflB ATP-dependent me 100.0 2.8E-36 6.1E-41 325.5 26.5 249 185-434 146-394 (644)
31 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.1E-36 1.7E-40 334.7 23.3 220 209-437 1614-1882(2281)
32 KOG0730 AAA+-type ATPase [Post 100.0 2.5E-35 5.4E-40 303.9 20.8 239 186-435 180-419 (693)
33 KOG0732 AAA+-type ATPase conta 100.0 2E-35 4.2E-40 320.1 17.9 251 184-437 258-530 (1080)
34 KOG0741 AAA+-type ATPase [Post 100.0 2.3E-35 5.1E-40 295.9 15.2 251 183-434 211-492 (744)
35 TIGR01243 CDC48 AAA family ATP 100.0 1.7E-33 3.6E-38 309.6 25.4 247 185-434 172-437 (733)
36 KOG0740 AAA+-type ATPase [Post 100.0 1E-33 2.2E-38 284.7 16.3 248 182-435 144-407 (428)
37 PLN00020 ribulose bisphosphate 100.0 3.8E-31 8.2E-36 260.2 20.5 185 220-409 143-348 (413)
38 KOG2004 Mitochondrial ATP-depe 99.9 2.5E-24 5.3E-29 223.4 10.9 281 97-417 339-638 (906)
39 CHL00181 cbbX CbbX; Provisiona 99.9 1.6E-22 3.6E-27 198.4 20.5 212 191-415 23-257 (287)
40 TIGR02880 cbbX_cfxQ probable R 99.9 2.3E-22 5.1E-27 197.3 19.1 211 192-415 23-256 (284)
41 TIGR02881 spore_V_K stage V sp 99.9 1.3E-21 2.9E-26 190.0 20.8 213 189-415 4-241 (261)
42 COG0466 Lon ATP-dependent Lon 99.9 1.4E-22 3.1E-27 211.6 11.5 294 98-431 252-583 (782)
43 KOG0743 AAA+-type ATPase [Post 99.9 1.6E-21 3.6E-26 195.3 17.1 208 188-405 198-413 (457)
44 PF00004 AAA: ATPase family as 99.9 2E-21 4.4E-26 167.7 13.8 130 228-361 1-132 (132)
45 TIGR00763 lon ATP-dependent pr 99.9 2.4E-21 5.3E-26 214.1 16.9 222 191-430 320-584 (775)
46 KOG0736 Peroxisome assembly fa 99.9 3E-20 6.5E-25 194.6 21.7 239 190-438 400-659 (953)
47 KOG0744 AAA+-type ATPase [Post 99.9 2.2E-21 4.8E-26 185.9 12.0 245 189-437 140-419 (423)
48 PF05496 RuvB_N: Holliday junc 99.8 7.8E-20 1.7E-24 169.9 18.7 196 184-409 17-226 (233)
49 KOG0742 AAA+-type ATPase [Post 99.8 4.2E-20 9.1E-25 181.6 17.1 235 184-430 348-610 (630)
50 KOG0735 AAA+-type ATPase [Post 99.8 1.3E-19 2.8E-24 188.3 18.6 232 191-434 408-650 (952)
51 PRK00080 ruvB Holliday junctio 99.8 4.9E-19 1.1E-23 177.6 21.8 220 183-432 17-250 (328)
52 TIGR02902 spore_lonB ATP-depen 99.8 1.8E-19 3.8E-24 191.1 19.1 248 152-431 26-331 (531)
53 TIGR00635 ruvB Holliday juncti 99.8 7E-19 1.5E-23 174.5 21.6 213 189-431 2-228 (305)
54 COG2255 RuvB Holliday junction 99.8 1.6E-18 3.5E-23 164.2 19.8 218 186-433 21-252 (332)
55 COG0464 SpoVK ATPases of the A 99.8 1.3E-18 2.9E-23 183.8 21.0 222 209-435 2-229 (494)
56 COG2256 MGS1 ATPase related to 99.8 1.1E-18 2.4E-23 172.5 18.4 204 186-434 19-240 (436)
57 TIGR02639 ClpA ATP-dependent C 99.8 1.3E-18 2.8E-23 191.5 19.3 225 184-433 175-430 (731)
58 PRK10787 DNA-binding ATP-depen 99.8 5E-19 1.1E-23 194.4 15.4 222 191-431 322-581 (784)
59 PRK11034 clpA ATP-dependent Cl 99.8 3.5E-18 7.6E-23 186.5 18.3 224 184-432 179-433 (758)
60 PRK14956 DNA polymerase III su 99.8 1.3E-17 2.8E-22 171.9 19.6 205 181-427 8-241 (484)
61 PRK04195 replication factor C 99.8 2.9E-17 6.2E-22 172.9 20.5 212 179-428 2-221 (482)
62 PRK14962 DNA polymerase III su 99.8 3.4E-17 7.5E-22 170.7 20.7 207 182-430 5-240 (472)
63 PRK07003 DNA polymerase III su 99.8 2.9E-17 6.2E-22 175.3 19.8 193 181-411 6-227 (830)
64 PRK12323 DNA polymerase III su 99.8 1.8E-17 3.9E-22 174.8 16.8 192 181-410 6-231 (700)
65 PRK13342 recombination factor 99.8 5.7E-17 1.2E-21 167.5 20.1 204 182-432 3-219 (413)
66 PRK14961 DNA polymerase III su 99.7 6.7E-17 1.5E-21 164.2 19.5 208 181-430 6-242 (363)
67 PRK12402 replication factor C 99.7 1.5E-16 3.3E-21 159.6 21.6 214 179-430 3-247 (337)
68 PLN03025 replication factor C 99.7 1.2E-16 2.6E-21 159.8 20.3 204 180-427 2-218 (319)
69 PRK14960 DNA polymerase III su 99.7 8.1E-17 1.8E-21 170.3 19.4 205 182-428 6-239 (702)
70 TIGR02928 orc1/cdc6 family rep 99.7 1.6E-16 3.5E-21 161.4 21.1 220 191-433 15-275 (365)
71 PRK14958 DNA polymerase III su 99.7 5E-17 1.1E-21 171.1 17.8 206 181-428 6-240 (509)
72 PRK07994 DNA polymerase III su 99.7 1.9E-16 4E-21 169.4 20.1 206 181-428 6-240 (647)
73 PRK06645 DNA polymerase III su 99.7 1.8E-16 3.9E-21 166.1 19.5 217 180-429 10-253 (507)
74 PRK14949 DNA polymerase III su 99.7 2.6E-16 5.5E-21 171.0 20.2 197 181-409 6-225 (944)
75 PRK00411 cdc6 cell division co 99.7 8.1E-16 1.8E-20 157.9 23.0 222 190-433 29-283 (394)
76 PHA02544 44 clamp loader, smal 99.7 3E-16 6.6E-21 156.4 18.9 164 179-375 9-173 (316)
77 PRK08691 DNA polymerase III su 99.7 3.1E-16 6.6E-21 167.3 18.9 207 181-429 6-241 (709)
78 PRK14964 DNA polymerase III su 99.7 3.6E-16 7.9E-21 162.7 18.2 205 182-428 4-237 (491)
79 PRK14963 DNA polymerase III su 99.7 8.8E-16 1.9E-20 161.4 20.3 203 183-428 6-236 (504)
80 PRK00149 dnaA chromosomal repl 99.7 9.8E-16 2.1E-20 160.1 20.3 220 186-434 117-351 (450)
81 TIGR03345 VI_ClpV1 type VI sec 99.7 9.2E-16 2E-20 170.5 20.8 221 184-430 180-429 (852)
82 PRK14957 DNA polymerase III su 99.7 1E-15 2.2E-20 161.4 20.0 206 181-428 6-240 (546)
83 PRK13341 recombination factor 99.7 9.4E-16 2E-20 166.9 20.2 209 181-431 18-246 (725)
84 PRK00440 rfc replication facto 99.7 1.5E-15 3.2E-20 151.2 19.9 208 178-429 4-223 (319)
85 TIGR00362 DnaA chromosomal rep 99.7 1.5E-15 3.3E-20 156.7 20.6 219 186-434 105-339 (405)
86 PRK14951 DNA polymerase III su 99.7 7.8E-16 1.7E-20 164.3 18.8 206 181-428 6-245 (618)
87 KOG0989 Replication factor C, 99.7 8.2E-16 1.8E-20 147.3 16.8 194 180-409 25-235 (346)
88 PRK14969 DNA polymerase III su 99.7 6.5E-16 1.4E-20 163.6 17.7 207 181-429 6-241 (527)
89 PRK05563 DNA polymerase III su 99.7 2.6E-15 5.7E-20 160.1 22.3 204 182-427 7-239 (559)
90 KOG2028 ATPase related to the 99.7 6.6E-16 1.4E-20 150.5 15.7 208 183-431 130-367 (554)
91 PRK14959 DNA polymerase III su 99.7 1.3E-15 2.9E-20 161.6 18.9 206 181-428 6-240 (624)
92 PTZ00112 origin recognition co 99.7 1.2E-15 2.6E-20 163.7 18.3 220 191-436 755-1010(1164)
93 TIGR02397 dnaX_nterm DNA polym 99.7 3.9E-15 8.4E-20 150.6 21.3 207 181-429 4-239 (355)
94 TIGR02640 gas_vesic_GvpN gas v 99.7 2.8E-15 6E-20 145.8 18.9 192 225-435 21-260 (262)
95 PRK14952 DNA polymerase III su 99.7 2.7E-15 5.8E-20 159.6 20.0 205 183-428 5-240 (584)
96 PRK08903 DnaA regulatory inact 99.7 7.7E-15 1.7E-19 139.5 21.3 202 185-430 12-224 (227)
97 PRK05896 DNA polymerase III su 99.7 1.3E-15 2.7E-20 161.0 17.4 206 180-427 5-239 (605)
98 PRK07133 DNA polymerase III su 99.7 2.2E-15 4.8E-20 162.1 19.5 213 180-428 7-239 (725)
99 PRK07764 DNA polymerase III su 99.7 2.1E-15 4.6E-20 166.0 19.5 204 181-425 5-239 (824)
100 COG3829 RocR Transcriptional r 99.7 2.8E-16 6E-21 161.1 11.4 212 185-426 239-491 (560)
101 PRK06893 DNA replication initi 99.7 4.2E-15 9E-20 141.7 18.3 211 184-429 9-227 (229)
102 PRK14953 DNA polymerase III su 99.7 3.5E-15 7.6E-20 156.3 19.4 212 181-428 6-240 (486)
103 PRK10865 protein disaggregatio 99.7 1.4E-15 3E-20 169.5 16.8 170 184-379 171-358 (857)
104 TIGR03420 DnaA_homol_Hda DnaA 99.7 7.9E-15 1.7E-19 138.9 19.2 202 188-429 12-225 (226)
105 PRK14970 DNA polymerase III su 99.7 4.9E-15 1.1E-19 150.9 18.7 210 180-429 6-230 (367)
106 PRK08451 DNA polymerase III su 99.7 5.9E-15 1.3E-19 155.0 19.6 205 181-427 4-237 (535)
107 PRK14965 DNA polymerase III su 99.6 3E-15 6.6E-20 160.2 17.6 206 181-428 6-240 (576)
108 CHL00095 clpC Clp protease ATP 99.6 4.7E-15 1E-19 165.2 19.5 202 185-412 173-401 (821)
109 PRK08084 DNA replication initi 99.6 2E-14 4.4E-19 137.5 21.1 206 185-429 16-233 (235)
110 TIGR03346 chaperone_ClpB ATP-d 99.6 5.2E-15 1.1E-19 165.4 19.1 202 184-411 166-395 (852)
111 PRK06305 DNA polymerase III su 99.6 1.1E-14 2.4E-19 151.6 20.2 205 181-427 7-241 (451)
112 TIGR00390 hslU ATP-dependent p 99.6 7.2E-15 1.6E-19 148.5 17.7 241 193-435 14-433 (441)
113 PRK14955 DNA polymerase III su 99.6 8.4E-15 1.8E-19 150.6 18.7 210 182-429 7-254 (397)
114 PRK07940 DNA polymerase III su 99.6 5.3E-15 1.2E-19 151.0 16.9 184 188-402 2-212 (394)
115 PRK06647 DNA polymerase III su 99.6 1E-14 2.2E-19 155.2 18.6 206 181-428 6-240 (563)
116 PRK14088 dnaA chromosomal repl 99.6 2E-14 4.3E-19 149.4 19.6 220 185-434 99-334 (440)
117 PRK09111 DNA polymerase III su 99.6 2.1E-14 4.6E-19 153.5 20.2 213 181-429 14-254 (598)
118 PRK05342 clpX ATP-dependent pr 99.6 1.6E-14 3.4E-19 148.3 18.4 221 193-415 73-381 (412)
119 TIGR02903 spore_lon_C ATP-depe 99.6 4.8E-14 1E-18 152.0 22.9 219 185-432 148-430 (615)
120 PRK05201 hslU ATP-dependent pr 99.6 1.1E-14 2.3E-19 147.4 16.0 241 193-435 17-435 (443)
121 PRK13407 bchI magnesium chelat 99.6 1.3E-14 2.7E-19 145.0 15.5 222 186-437 3-311 (334)
122 PRK11034 clpA ATP-dependent Cl 99.6 2.4E-14 5.2E-19 156.7 18.8 163 193-376 460-667 (758)
123 PRK14086 dnaA chromosomal repl 99.6 8.1E-14 1.8E-18 147.5 22.2 220 186-434 283-517 (617)
124 PRK14954 DNA polymerase III su 99.6 6.5E-14 1.4E-18 150.0 21.4 216 182-429 7-254 (620)
125 PRK08727 hypothetical protein; 99.6 1.5E-13 3.3E-18 131.2 21.5 206 186-431 14-230 (233)
126 PRK12422 chromosomal replicati 99.6 9.7E-14 2.1E-18 144.1 21.5 226 185-434 105-345 (445)
127 COG1474 CDC6 Cdc6-related prot 99.6 5.7E-14 1.2E-18 142.2 18.9 217 193-434 19-267 (366)
128 CHL00081 chlI Mg-protoporyphyr 99.6 4E-14 8.7E-19 141.7 17.0 229 184-438 10-328 (350)
129 COG1224 TIP49 DNA helicase TIP 99.6 1.7E-13 3.8E-18 133.6 20.1 132 285-436 292-436 (450)
130 PRK05642 DNA replication initi 99.6 3.7E-13 8.1E-18 128.7 21.2 179 225-429 45-232 (234)
131 PRK14948 DNA polymerase III su 99.6 1.3E-13 2.9E-18 148.3 20.0 194 182-407 7-225 (620)
132 COG3604 FhlA Transcriptional r 99.6 1.7E-14 3.7E-19 146.3 12.0 197 187-412 219-456 (550)
133 COG2204 AtoC Response regulato 99.6 3E-14 6.4E-19 146.2 13.2 208 188-426 138-385 (464)
134 TIGR02639 ClpA ATP-dependent C 99.6 1.1E-13 2.3E-18 152.7 18.5 201 192-413 455-712 (731)
135 TIGR00382 clpX endopeptidase C 99.6 1.1E-13 2.4E-18 141.4 16.9 221 193-415 79-387 (413)
136 PRK14971 DNA polymerase III su 99.5 3.3E-13 7.2E-18 145.1 21.2 193 181-411 7-229 (614)
137 PRK14950 DNA polymerase III su 99.5 2.2E-13 4.8E-18 146.5 19.7 205 182-428 7-241 (585)
138 PRK14087 dnaA chromosomal repl 99.5 2.9E-13 6.4E-18 140.9 19.5 190 226-433 142-349 (450)
139 TIGR02030 BchI-ChlI magnesium 99.5 1.2E-13 2.5E-18 138.3 15.8 221 189-438 2-315 (337)
140 PRK06620 hypothetical protein; 99.5 3.6E-13 7.8E-18 127.0 18.2 195 185-429 10-213 (214)
141 COG2812 DnaX DNA polymerase II 99.5 5.6E-14 1.2E-18 146.1 13.1 199 182-412 7-228 (515)
142 PRK15424 propionate catabolism 99.5 5.4E-14 1.2E-18 148.5 12.5 210 188-425 216-478 (538)
143 PF00308 Bac_DnaA: Bacterial d 99.5 5.9E-13 1.3E-17 126.0 17.3 198 186-412 3-216 (219)
144 TIGR02329 propionate_PrpR prop 99.5 1E-13 2.2E-18 146.4 12.6 211 188-426 209-464 (526)
145 PF05673 DUF815: Protein of un 99.5 1.3E-12 2.7E-17 123.4 18.5 168 184-382 20-214 (249)
146 TIGR02442 Cob-chelat-sub cobal 99.5 4.9E-13 1.1E-17 145.0 18.0 220 189-438 2-310 (633)
147 cd00009 AAA The AAA+ (ATPases 99.5 6.3E-13 1.4E-17 115.2 14.7 140 195-360 2-150 (151)
148 TIGR02974 phageshock_pspF psp 99.5 2.4E-13 5.3E-18 136.2 13.7 192 193-412 1-233 (329)
149 TIGR01650 PD_CobS cobaltochela 99.5 3E-13 6.6E-18 133.5 13.6 139 225-377 64-235 (327)
150 COG0542 clpA ATP-binding subun 99.5 3.2E-13 7E-18 145.5 14.1 165 192-377 492-707 (786)
151 TIGR01817 nifA Nif-specific re 99.5 5.2E-13 1.1E-17 142.6 15.4 211 185-426 190-439 (534)
152 PRK11608 pspF phage shock prot 99.5 4.7E-13 1E-17 134.1 14.1 196 189-412 4-240 (326)
153 TIGR03346 chaperone_ClpB ATP-d 99.5 1.8E-12 4E-17 145.0 19.9 204 191-415 565-828 (852)
154 COG1221 PspF Transcriptional r 99.5 2.5E-13 5.3E-18 137.2 11.1 198 187-413 74-310 (403)
155 TIGR03345 VI_ClpV1 type VI sec 99.5 2.2E-12 4.7E-17 143.7 19.7 201 191-413 566-831 (852)
156 PRK05022 anaerobic nitric oxid 99.5 4.4E-13 9.5E-18 142.2 12.9 197 189-413 185-421 (509)
157 TIGR00764 lon_rel lon-related 99.5 2.5E-12 5.4E-17 138.4 18.7 136 286-434 219-393 (608)
158 PRK10820 DNA-binding transcrip 99.5 1.1E-12 2.3E-17 139.4 15.5 211 184-425 197-447 (520)
159 PRK11388 DNA-binding transcrip 99.4 7.1E-13 1.5E-17 144.5 14.1 212 187-429 321-568 (638)
160 PRK09087 hypothetical protein; 99.4 5.2E-12 1.1E-16 120.1 18.2 172 226-432 45-222 (226)
161 PRK10865 protein disaggregatio 99.4 4.3E-12 9.4E-17 141.7 20.1 167 190-377 567-781 (857)
162 PRK13531 regulatory ATPase Rav 99.4 4.8E-12 1.1E-16 130.5 18.8 216 192-436 21-287 (498)
163 COG0593 DnaA ATPase involved i 99.4 9.2E-12 2E-16 126.2 20.4 192 225-435 113-316 (408)
164 KOG1969 DNA replication checkp 99.4 6.3E-12 1.4E-16 132.2 19.0 212 179-416 259-519 (877)
165 CHL00095 clpC Clp protease ATP 99.4 4.2E-12 9.1E-17 141.7 18.6 199 191-410 509-779 (821)
166 TIGR00368 Mg chelatase-related 99.4 5.3E-12 1.1E-16 132.6 18.2 212 188-430 189-497 (499)
167 COG0714 MoxR-like ATPases [Gen 99.4 1.3E-11 2.7E-16 124.1 18.8 215 193-435 26-299 (329)
168 TIGR03015 pepcterm_ATPase puta 99.4 4.8E-11 1E-15 116.0 22.0 192 226-433 44-267 (269)
169 PRK09112 DNA polymerase III su 99.4 1.2E-11 2.7E-16 124.7 18.3 188 186-406 18-242 (351)
170 PF00158 Sigma54_activat: Sigm 99.4 1.5E-12 3.3E-17 118.0 9.8 122 193-339 1-143 (168)
171 PRK15429 formate hydrogenlyase 99.4 6.7E-12 1.5E-16 137.8 16.7 197 188-412 373-609 (686)
172 PHA02244 ATPase-like protein 99.4 1.2E-11 2.7E-16 123.5 16.7 125 225-364 119-263 (383)
173 PRK07471 DNA polymerase III su 99.4 2.1E-11 4.5E-16 123.7 17.4 184 186-404 14-238 (365)
174 PRK05564 DNA polymerase III su 99.4 2.2E-11 4.8E-16 121.5 17.0 169 189-395 2-182 (313)
175 smart00350 MCM minichromosome 99.4 1.8E-11 3.9E-16 129.8 17.2 226 192-434 204-506 (509)
176 TIGR02031 BchD-ChlD magnesium 99.3 3.5E-11 7.5E-16 129.4 18.0 197 226-438 17-264 (589)
177 KOG1942 DNA helicase, TBP-inte 99.3 8.7E-11 1.9E-15 112.1 17.7 134 284-437 296-443 (456)
178 KOG0991 Replication factor C, 99.3 1E-11 2.2E-16 115.1 10.9 152 180-369 16-179 (333)
179 COG0542 clpA ATP-binding subun 99.3 6.6E-11 1.4E-15 127.8 18.5 171 184-379 163-350 (786)
180 PF06068 TIP49: TIP49 C-termin 99.3 5.6E-11 1.2E-15 117.9 16.3 104 285-408 279-395 (398)
181 TIGR00678 holB DNA polymerase 99.3 9.3E-11 2E-15 108.2 16.8 143 224-395 13-183 (188)
182 PF07728 AAA_5: AAA domain (dy 99.3 6.3E-12 1.4E-16 110.0 7.6 113 227-353 1-139 (139)
183 PF05621 TniB: Bacterial TniB 99.3 1.8E-10 3.8E-15 112.2 18.3 206 197-427 43-284 (302)
184 PF01078 Mg_chelatase: Magnesi 99.3 4.5E-12 9.8E-17 117.3 6.5 122 189-339 1-158 (206)
185 COG0470 HolB ATPase involved i 99.3 1.4E-10 3.1E-15 115.5 17.7 149 192-372 2-178 (325)
186 PRK07399 DNA polymerase III su 99.3 1.6E-10 3.4E-15 115.1 17.3 183 189-406 2-223 (314)
187 PRK11331 5-methylcytosine-spec 99.3 7.6E-11 1.7E-15 120.8 15.0 144 190-361 174-357 (459)
188 PRK04132 replication factor C 99.3 1.4E-10 3.1E-15 127.5 18.2 157 227-409 566-736 (846)
189 PRK09862 putative ATP-dependen 99.3 1.3E-10 2.7E-15 121.9 17.0 212 188-430 188-490 (506)
190 TIGR00602 rad24 checkpoint pro 99.3 1.1E-10 2.3E-15 125.4 16.8 208 179-413 72-329 (637)
191 TIGR02915 PEP_resp_reg putativ 99.3 1.8E-11 3.9E-16 127.8 10.7 206 189-425 137-382 (445)
192 COG1220 HslU ATP-dependent pro 99.3 9.5E-11 2.1E-15 113.9 14.2 85 286-372 252-346 (444)
193 PRK10923 glnG nitrogen regulat 99.2 6.6E-11 1.4E-15 124.4 13.7 210 189-429 136-385 (469)
194 smart00382 AAA ATPases associa 99.2 6.8E-11 1.5E-15 101.3 11.1 126 225-362 2-147 (148)
195 COG2607 Predicted ATPase (AAA+ 99.2 1.1E-09 2.4E-14 102.2 18.7 168 184-382 53-246 (287)
196 PRK13765 ATP-dependent proteas 99.2 1.9E-10 4E-15 123.8 15.0 134 285-431 227-399 (637)
197 PF07724 AAA_2: AAA domain (Cd 99.2 4E-11 8.7E-16 109.1 8.2 115 225-341 3-131 (171)
198 KOG2680 DNA helicase TIP49, TB 99.2 1E-09 2.2E-14 105.2 17.4 134 284-437 288-434 (454)
199 PRK05707 DNA polymerase III su 99.2 4.1E-10 8.8E-15 112.8 15.5 148 223-395 20-195 (328)
200 COG3283 TyrR Transcriptional r 99.2 8.4E-11 1.8E-15 115.0 10.0 200 184-412 197-432 (511)
201 PRK11361 acetoacetate metaboli 99.2 3.7E-10 7.9E-15 118.3 15.6 208 189-427 141-388 (457)
202 KOG0745 Putative ATP-dependent 99.2 1E-09 2.3E-14 109.8 16.6 96 225-320 226-330 (564)
203 PRK08058 DNA polymerase III su 99.2 2.6E-10 5.6E-15 114.5 12.5 149 189-373 3-180 (329)
204 TIGR01818 ntrC nitrogen regula 99.1 1.9E-10 4E-15 120.7 11.4 209 190-429 133-381 (463)
205 PRK15115 response regulator Gl 99.1 1.1E-09 2.3E-14 114.4 16.4 202 192-427 135-379 (444)
206 KOG1514 Origin recognition com 99.1 1.9E-09 4.2E-14 113.6 17.1 224 193-438 398-661 (767)
207 KOG0990 Replication factor C, 99.1 1.2E-09 2.6E-14 105.8 12.0 166 179-379 29-207 (360)
208 KOG2035 Replication factor C, 99.1 1E-08 2.2E-13 97.6 17.8 179 180-395 2-220 (351)
209 smart00763 AAA_PrkA PrkA AAA d 99.1 3.6E-09 7.7E-14 105.9 15.6 61 190-258 49-118 (361)
210 PF14532 Sigma54_activ_2: Sigm 99.1 2.9E-10 6.3E-15 99.7 6.7 106 194-339 1-109 (138)
211 COG0606 Predicted ATPase with 99.1 2.8E-10 6E-15 115.9 7.4 209 187-430 175-483 (490)
212 PTZ00111 DNA replication licen 99.0 7.4E-09 1.6E-13 113.8 18.6 229 192-437 451-809 (915)
213 PF07726 AAA_3: ATPase family 99.0 2.1E-10 4.5E-15 98.1 5.1 114 227-353 1-129 (131)
214 PF13177 DNA_pol3_delta2: DNA 99.0 3E-09 6.4E-14 96.0 11.8 134 195-362 1-161 (162)
215 PRK06871 DNA polymerase III su 99.0 1.3E-08 2.7E-13 101.6 17.2 144 196-374 7-178 (325)
216 COG1219 ClpX ATP-dependent pro 99.0 1.3E-09 2.8E-14 105.4 9.5 95 226-320 98-201 (408)
217 COG1239 ChlI Mg-chelatase subu 99.0 9.5E-09 2.1E-13 103.5 15.7 219 188-437 14-327 (423)
218 PRK10365 transcriptional regul 99.0 1.9E-09 4.1E-14 112.3 10.7 205 192-427 140-384 (441)
219 PRK08116 hypothetical protein; 99.0 5E-09 1.1E-13 102.2 12.5 123 225-364 114-251 (268)
220 COG3284 AcoR Transcriptional a 99.0 8.5E-10 1.8E-14 115.6 7.1 171 225-412 336-540 (606)
221 PF03215 Rad17: Rad17 cell cyc 99.0 1.7E-08 3.7E-13 106.6 16.9 210 179-413 7-269 (519)
222 PRK06964 DNA polymerase III su 98.9 6.2E-09 1.4E-13 104.5 11.6 133 223-374 19-203 (342)
223 PRK08769 DNA polymerase III su 98.9 2.5E-08 5.4E-13 99.3 15.7 147 196-373 9-183 (319)
224 PRK07993 DNA polymerase III su 98.9 2E-08 4.4E-13 100.9 15.0 144 196-373 7-178 (334)
225 KOG2227 Pre-initiation complex 98.9 4.4E-08 9.6E-13 99.3 16.6 221 191-434 150-417 (529)
226 PRK12377 putative replication 98.9 1.3E-08 2.9E-13 97.8 11.3 100 225-340 101-206 (248)
227 PRK08181 transposase; Validate 98.9 1.2E-08 2.7E-13 99.2 11.0 100 225-340 106-209 (269)
228 PRK06090 DNA polymerase III su 98.9 4.6E-08 1E-12 97.3 14.3 144 196-373 8-178 (319)
229 PRK13406 bchD magnesium chelat 98.8 3.2E-08 7E-13 105.9 14.0 196 226-438 26-256 (584)
230 PRK07952 DNA replication prote 98.8 3.3E-08 7.1E-13 94.9 12.5 100 226-340 100-205 (244)
231 KOG1051 Chaperone HSP104 and r 98.8 2.7E-08 5.8E-13 109.3 13.3 127 192-339 563-710 (898)
232 PF13173 AAA_14: AAA domain 98.8 3.4E-08 7.3E-13 85.4 11.1 118 226-366 3-126 (128)
233 KOG0741 AAA+-type ATPase [Post 98.8 3.8E-08 8.2E-13 100.8 12.4 143 225-373 538-684 (744)
234 PRK06835 DNA replication prote 98.8 3.8E-08 8.2E-13 98.5 12.2 123 225-364 183-319 (329)
235 PF01637 Arch_ATPase: Archaeal 98.8 1.4E-08 3E-13 95.6 8.6 185 194-403 2-233 (234)
236 PRK08699 DNA polymerase III su 98.8 2.6E-08 5.7E-13 99.7 10.9 132 223-373 19-183 (325)
237 PRK06526 transposase; Provisio 98.7 2.3E-08 5.1E-13 96.6 7.7 100 225-340 98-201 (254)
238 PRK06921 hypothetical protein; 98.7 2.1E-07 4.6E-12 90.7 12.1 103 225-339 117-224 (266)
239 PRK09183 transposase/IS protei 98.6 1.1E-07 2.3E-12 92.4 9.5 101 225-340 102-206 (259)
240 PF01695 IstB_IS21: IstB-like 98.6 6.6E-08 1.4E-12 88.6 7.3 101 224-340 46-150 (178)
241 PRK08939 primosomal protein Dn 98.6 1.4E-07 3E-12 93.7 9.7 102 224-340 155-261 (306)
242 PF13401 AAA_22: AAA domain; P 98.6 2.3E-07 5.1E-12 79.7 9.6 98 225-339 4-125 (131)
243 COG1484 DnaC DNA replication p 98.6 2.7E-07 5.8E-12 89.3 11.0 118 195-340 87-209 (254)
244 PF12774 AAA_6: Hydrolytic ATP 98.6 1.9E-06 4.2E-11 82.0 15.7 163 225-411 32-226 (231)
245 PF12775 AAA_7: P-loop contain 98.6 3.8E-07 8.3E-12 89.1 11.2 139 225-377 33-195 (272)
246 COG3267 ExeA Type II secretory 98.6 4.4E-06 9.5E-11 79.3 17.7 184 227-426 53-267 (269)
247 PF03969 AFG1_ATPase: AFG1-lik 98.5 2.7E-07 5.9E-12 93.5 8.6 102 222-340 59-168 (362)
248 COG1241 MCM2 Predicted ATPase 98.5 1.2E-06 2.6E-11 94.4 13.1 227 192-436 287-596 (682)
249 PLN03210 Resistant to P. syrin 98.5 3.1E-06 6.6E-11 98.5 17.5 178 185-397 178-389 (1153)
250 PRK05917 DNA polymerase III su 98.5 1.5E-06 3.2E-11 85.2 12.5 131 198-362 4-154 (290)
251 KOG1970 Checkpoint RAD17-RFC c 98.5 4.5E-06 9.7E-11 86.5 16.3 214 179-413 70-321 (634)
252 cd01120 RecA-like_NTPases RecA 98.5 9.5E-07 2.1E-11 78.1 10.2 110 228-341 2-138 (165)
253 KOG0480 DNA replication licens 98.5 2.3E-06 4.9E-11 89.8 13.9 223 190-435 344-646 (764)
254 PF00493 MCM: MCM2/3/5 family 98.5 1.7E-07 3.6E-12 94.3 5.0 193 225-434 57-328 (331)
255 COG4650 RtcR Sigma54-dependent 98.4 2.1E-06 4.5E-11 82.6 11.4 199 220-435 203-446 (531)
256 PF05729 NACHT: NACHT domain 98.4 3.8E-06 8.3E-11 74.7 12.4 140 227-377 2-165 (166)
257 PF00931 NB-ARC: NB-ARC domain 98.4 8.8E-06 1.9E-10 79.6 16.0 173 197-404 2-202 (287)
258 PRK07276 DNA polymerase III su 98.3 1.7E-05 3.6E-10 78.0 15.5 143 196-372 7-172 (290)
259 KOG0478 DNA replication licens 98.3 2.1E-05 4.5E-10 83.3 16.7 133 226-372 463-623 (804)
260 PRK05818 DNA polymerase III su 98.3 1.9E-05 4.1E-10 76.0 14.4 121 223-362 5-147 (261)
261 TIGR02237 recomb_radB DNA repa 98.3 2.7E-06 5.8E-11 79.6 8.3 78 221-298 8-111 (209)
262 PRK07132 DNA polymerase III su 98.3 3.4E-05 7.3E-10 76.3 16.3 140 198-373 3-160 (299)
263 COG1485 Predicted ATPase [Gene 98.2 1.1E-05 2.5E-10 79.8 11.7 105 222-343 62-175 (367)
264 PRK11823 DNA repair protein Ra 98.2 1.3E-05 2.8E-10 83.8 12.0 80 221-300 76-172 (446)
265 KOG1968 Replication factor C, 98.2 7.2E-06 1.5E-10 91.0 10.4 211 180-411 309-535 (871)
266 PF14516 AAA_35: AAA-like doma 98.2 0.00033 7.2E-09 70.5 21.3 186 195-407 15-242 (331)
267 PF00910 RNA_helicase: RNA hel 98.1 8.2E-06 1.8E-10 68.3 7.5 23 228-250 1-23 (107)
268 cd01124 KaiC KaiC is a circadi 98.1 2E-05 4.3E-10 72.1 10.2 102 228-340 2-140 (187)
269 cd01121 Sms Sms (bacterial rad 98.1 2.4E-05 5.1E-10 79.8 11.5 79 221-299 78-173 (372)
270 COG1116 TauB ABC-type nitrate/ 98.1 8.2E-06 1.8E-10 77.4 7.3 26 223-248 27-52 (248)
271 KOG2543 Origin recognition com 98.1 7.5E-05 1.6E-09 74.6 13.8 159 192-374 7-192 (438)
272 KOG2383 Predicted ATPase [Gene 98.1 4.9E-05 1.1E-09 76.2 12.4 158 223-410 112-298 (467)
273 KOG2170 ATPase of the AAA+ sup 98.1 0.00015 3.2E-09 70.4 15.2 128 193-341 84-226 (344)
274 PRK09361 radB DNA repair and r 98.1 2.5E-05 5.3E-10 74.0 10.0 39 221-259 19-60 (225)
275 COG1618 Predicted nucleotide k 98.0 6.9E-05 1.5E-09 66.5 11.5 27 224-250 4-30 (179)
276 cd00983 recA RecA is a bacter 98.0 3.2E-05 6.9E-10 77.1 10.4 118 221-338 51-190 (325)
277 TIGR02012 tigrfam_recA protein 98.0 3E-05 6.6E-10 77.2 10.1 118 221-338 51-190 (321)
278 PRK08533 flagellar accessory p 97.9 9.7E-05 2.1E-09 70.5 11.8 110 221-340 20-163 (230)
279 KOG1051 Chaperone HSP104 and r 97.9 0.00014 3.1E-09 80.5 14.4 162 190-377 185-365 (898)
280 TIGR02688 conserved hypothetic 97.9 0.00013 2.8E-09 74.7 12.9 81 224-320 208-289 (449)
281 KOG0482 DNA replication licens 97.9 9.4E-05 2E-09 76.0 11.7 227 192-438 343-644 (721)
282 cd01394 radB RadB. The archaea 97.9 5.7E-05 1.2E-09 71.1 9.7 117 221-339 15-157 (218)
283 PF07693 KAP_NTPase: KAP famil 97.9 0.00075 1.6E-08 67.3 18.2 79 284-377 172-265 (325)
284 TIGR01618 phage_P_loop phage n 97.9 6.3E-05 1.4E-09 71.1 9.5 107 225-335 12-140 (220)
285 KOG0477 DNA replication licens 97.9 5.6E-05 1.2E-09 79.3 9.9 188 226-435 483-760 (854)
286 COG1373 Predicted ATPase (AAA+ 97.9 0.00072 1.6E-08 69.8 17.8 123 227-369 39-161 (398)
287 COG5271 MDN1 AAA ATPase contai 97.9 8.2E-05 1.8E-09 85.0 11.3 137 225-376 1543-1704(4600)
288 PHA00729 NTP-binding motif con 97.9 3.7E-05 8.1E-10 72.6 7.4 25 226-250 18-42 (226)
289 KOG0481 DNA replication licens 97.9 0.00017 3.7E-09 74.3 12.3 230 192-435 332-642 (729)
290 PRK06067 flagellar accessory p 97.8 0.0001 2.2E-09 70.4 10.0 39 221-259 21-62 (234)
291 KOG2228 Origin recognition com 97.8 0.00017 3.8E-09 71.0 10.9 164 189-375 22-219 (408)
292 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.5E-10 66.7 4.1 30 228-257 2-31 (121)
293 TIGR00416 sms DNA repair prote 97.8 0.00021 4.5E-09 74.9 12.3 78 221-298 90-184 (454)
294 cd03283 ABC_MutS-like MutS-lik 97.8 0.00018 3.9E-09 67.1 10.3 107 222-342 22-150 (199)
295 PF13191 AAA_16: AAA ATPase do 97.8 2.9E-05 6.3E-10 70.5 4.9 59 193-261 2-63 (185)
296 PRK09376 rho transcription ter 97.8 0.00015 3.2E-09 73.7 10.2 111 227-337 171-317 (416)
297 TIGR02858 spore_III_AA stage I 97.8 0.00011 2.3E-09 71.8 9.0 68 226-293 112-203 (270)
298 PF05707 Zot: Zonular occluden 97.8 3.7E-05 8.1E-10 71.3 5.4 123 228-362 3-146 (193)
299 PRK04296 thymidine kinase; Pro 97.7 0.00026 5.6E-09 65.5 10.9 70 227-296 4-90 (190)
300 PF03266 NTPase_1: NTPase; In 97.7 2.1E-05 4.7E-10 71.3 3.5 23 227-249 1-23 (168)
301 PRK15455 PrkA family serine pr 97.7 3E-05 6.5E-10 81.9 4.6 63 189-258 74-137 (644)
302 cd01393 recA_like RecA is a b 97.7 0.00016 3.5E-09 68.3 9.3 116 221-337 15-166 (226)
303 cd03216 ABC_Carb_Monos_I This 97.7 0.00023 5.1E-09 64.0 9.8 107 221-341 22-143 (163)
304 PRK09354 recA recombinase A; P 97.7 0.00015 3.3E-09 72.9 9.4 78 221-298 56-152 (349)
305 PRK08118 topology modulation p 97.7 9.3E-05 2E-09 67.0 7.1 32 227-258 3-34 (167)
306 PHA02624 large T antigen; Prov 97.7 0.00025 5.4E-09 75.4 11.1 123 221-361 427-561 (647)
307 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00053 1.2E-08 65.6 12.6 38 221-258 17-57 (237)
308 PF13671 AAA_33: AAA domain; P 97.7 0.00015 3.3E-09 63.1 7.8 36 228-265 2-37 (143)
309 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 0.00028 6E-09 62.2 9.4 102 221-341 22-128 (144)
310 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00014 3E-09 69.2 8.0 116 221-337 15-167 (235)
311 COG4178 ABC-type uncharacteriz 97.7 0.00012 2.5E-09 78.1 7.8 53 274-341 523-575 (604)
312 PHA02774 E1; Provisional 97.6 0.00051 1.1E-08 72.8 12.4 128 225-383 434-589 (613)
313 cd01128 rho_factor Transcripti 97.6 0.00069 1.5E-08 65.4 12.4 114 224-337 15-164 (249)
314 PRK12339 2-phosphoglycerate ki 97.6 0.00065 1.4E-08 63.3 11.8 35 225-261 3-37 (197)
315 PF13604 AAA_30: AAA domain; P 97.6 0.00032 6.9E-09 65.2 9.8 97 225-339 18-130 (196)
316 cd03238 ABC_UvrA The excision 97.6 0.0003 6.6E-09 64.3 9.2 106 222-341 18-150 (176)
317 cd01131 PilT Pilus retraction 97.6 0.00032 6.9E-09 65.3 9.5 67 227-293 3-83 (198)
318 PRK07261 topology modulation p 97.6 0.00013 2.8E-09 66.4 6.6 32 227-258 2-33 (171)
319 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00035 7.6E-09 63.9 9.5 106 222-341 22-133 (177)
320 PRK00131 aroK shikimate kinase 97.6 7.2E-05 1.6E-09 67.3 4.7 32 224-255 3-34 (175)
321 PF06745 KaiC: KaiC; InterPro 97.6 0.00041 9E-09 65.7 10.0 108 221-338 15-159 (226)
322 COG4619 ABC-type uncharacteriz 97.6 0.00036 7.8E-09 62.5 8.7 29 221-249 25-53 (223)
323 COG3854 SpoIIIAA ncharacterize 97.6 0.0006 1.3E-08 64.0 10.3 72 225-296 137-230 (308)
324 cd03247 ABCC_cytochrome_bd The 97.6 0.00062 1.4E-08 62.0 10.5 107 221-342 24-159 (178)
325 PF06309 Torsin: Torsin; Inte 97.6 0.00026 5.6E-09 60.6 7.3 52 192-249 26-77 (127)
326 cd03228 ABCC_MRP_Like The MRP 97.5 0.00073 1.6E-08 61.2 10.6 108 221-343 24-158 (171)
327 PRK04841 transcriptional regul 97.5 0.0041 8.9E-08 70.7 18.9 157 225-403 32-224 (903)
328 TIGR03880 KaiC_arch_3 KaiC dom 97.5 0.0013 2.8E-08 62.2 12.5 110 221-339 12-153 (224)
329 TIGR02238 recomb_DMC1 meiotic 97.5 0.0005 1.1E-08 68.6 10.0 116 221-337 92-243 (313)
330 PRK06762 hypothetical protein; 97.5 0.00041 8.9E-09 62.3 8.6 39 225-263 2-40 (166)
331 cd01122 GP4d_helicase GP4d_hel 97.5 0.00048 1E-08 67.0 9.7 38 221-258 26-67 (271)
332 TIGR01420 pilT_fam pilus retra 97.5 0.00022 4.7E-09 72.2 7.3 70 225-294 122-205 (343)
333 cd03280 ABC_MutS2 MutS2 homolo 97.5 0.0007 1.5E-08 63.0 10.1 21 226-246 29-49 (200)
334 cd00984 DnaB_C DnaB helicase C 97.5 0.0005 1.1E-08 65.7 9.3 38 221-258 9-50 (242)
335 PRK10536 hypothetical protein; 97.5 0.0016 3.5E-08 62.7 12.7 44 190-248 54-97 (262)
336 cd03223 ABCD_peroxisomal_ALDP 97.5 0.00062 1.3E-08 61.4 9.4 104 221-341 23-149 (166)
337 cd00544 CobU Adenosylcobinamid 97.5 0.00077 1.7E-08 61.2 9.8 106 228-339 2-125 (169)
338 PRK13695 putative NTPase; Prov 97.5 0.0019 4.1E-08 58.7 12.3 23 227-249 2-24 (174)
339 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00078 1.7E-08 60.0 9.6 106 222-342 22-142 (157)
340 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0013 2.9E-08 63.8 11.7 38 221-258 32-72 (259)
341 cd01129 PulE-GspE PulE/GspE Th 97.4 0.00044 9.5E-09 67.4 8.3 93 188-294 57-159 (264)
342 COG5245 DYN1 Dynein, heavy cha 97.4 0.0013 2.9E-08 75.0 12.6 179 221-414 1490-1718(3164)
343 cd00046 DEXDc DEAD-like helica 97.4 0.00069 1.5E-08 57.3 8.5 23 227-249 2-24 (144)
344 cd03246 ABCC_Protease_Secretio 97.4 0.00097 2.1E-08 60.5 9.8 106 222-341 25-157 (173)
345 PLN03187 meiotic recombination 97.4 0.00051 1.1E-08 69.2 8.7 116 221-337 122-273 (344)
346 COG4608 AppF ABC-type oligopep 97.4 0.00051 1.1E-08 66.1 8.1 106 221-339 35-169 (268)
347 PF00437 T2SE: Type II/IV secr 97.4 0.0002 4.4E-09 69.8 5.5 96 189-295 102-208 (270)
348 PRK12723 flagellar biosynthesi 97.4 0.002 4.3E-08 66.1 12.9 26 224-249 173-198 (388)
349 cd03243 ABC_MutS_homologs The 97.4 0.00075 1.6E-08 62.9 8.9 24 224-247 28-51 (202)
350 COG5271 MDN1 AAA ATPase contai 97.4 0.00077 1.7E-08 77.5 10.2 134 227-375 890-1047(4600)
351 COG1126 GlnQ ABC-type polar am 97.4 0.001 2.2E-08 62.0 9.5 50 276-339 146-195 (240)
352 PRK09519 recA DNA recombinatio 97.4 0.00079 1.7E-08 74.2 10.2 117 221-337 56-194 (790)
353 cd03214 ABC_Iron-Siderophores_ 97.4 0.00096 2.1E-08 60.9 9.3 109 221-342 21-160 (180)
354 PRK04328 hypothetical protein; 97.4 0.0022 4.8E-08 61.9 12.3 38 221-258 19-59 (249)
355 PRK06581 DNA polymerase III su 97.4 0.013 2.8E-07 55.9 16.8 136 225-379 15-165 (263)
356 PRK13947 shikimate kinase; Pro 97.4 0.00018 3.8E-09 64.9 4.3 31 227-257 3-33 (171)
357 PRK03839 putative kinase; Prov 97.4 0.00016 3.5E-09 66.0 4.0 31 227-257 2-32 (180)
358 PRK04301 radA DNA repair and r 97.4 0.00096 2.1E-08 66.8 9.9 117 221-338 98-251 (317)
359 PRK05800 cobU adenosylcobinami 97.4 0.00079 1.7E-08 61.2 8.4 106 227-339 3-125 (170)
360 PF04665 Pox_A32: Poxvirus A32 97.4 0.0029 6.3E-08 60.5 12.5 132 224-374 12-169 (241)
361 TIGR02782 TrbB_P P-type conjug 97.4 0.00057 1.2E-08 67.8 8.1 70 225-294 132-214 (299)
362 PRK00771 signal recognition pa 97.3 0.0017 3.6E-08 67.7 11.5 72 223-296 93-187 (437)
363 TIGR02239 recomb_RAD51 DNA rep 97.3 0.00054 1.2E-08 68.5 7.6 116 221-337 92-243 (316)
364 COG1066 Sms Predicted ATP-depe 97.3 0.0022 4.8E-08 65.0 11.7 99 221-319 89-203 (456)
365 PF10443 RNA12: RNA12 protein; 97.3 0.016 3.4E-07 59.6 18.0 79 287-378 151-232 (431)
366 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.0022 4.7E-08 60.5 11.2 22 226-247 30-51 (213)
367 PRK05973 replicative DNA helic 97.3 0.001 2.2E-08 63.7 8.9 39 221-259 60-101 (237)
368 PRK00625 shikimate kinase; Pro 97.3 0.00022 4.8E-09 65.0 4.2 31 227-257 2-32 (173)
369 KOG3347 Predicted nucleotide k 97.3 0.00018 3.9E-09 62.9 3.4 31 226-256 8-38 (176)
370 cd00464 SK Shikimate kinase (S 97.3 0.00022 4.8E-09 62.9 4.1 39 227-267 1-39 (154)
371 PTZ00035 Rad51 protein; Provis 97.3 0.0011 2.5E-08 66.8 9.6 116 221-337 114-265 (337)
372 PRK12608 transcription termina 97.3 0.0017 3.7E-08 65.8 10.8 112 226-337 134-281 (380)
373 TIGR02236 recomb_radA DNA repa 97.3 0.0014 3E-08 65.4 10.0 40 221-260 91-139 (310)
374 COG0703 AroK Shikimate kinase 97.3 0.00034 7.3E-09 63.2 5.1 49 226-279 3-51 (172)
375 cd00227 CPT Chloramphenicol (C 97.3 0.00023 5.1E-09 64.7 4.1 37 225-261 2-38 (175)
376 PF05970 PIF1: PIF1-like helic 97.3 0.0015 3.2E-08 66.7 10.3 103 224-339 21-150 (364)
377 COG1124 DppF ABC-type dipeptid 97.3 0.0015 3.3E-08 61.8 9.2 52 276-340 151-202 (252)
378 PRK14532 adenylate kinase; Pro 97.3 0.00027 5.8E-09 64.9 4.1 37 227-265 2-38 (188)
379 cd01130 VirB11-like_ATPase Typ 97.3 0.0011 2.4E-08 61.0 8.1 70 224-293 24-109 (186)
380 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00026 5.7E-09 64.6 4.0 36 228-265 2-37 (183)
381 smart00534 MUTSac ATPase domai 97.3 0.0023 5E-08 58.8 10.3 101 228-341 2-123 (185)
382 PRK13949 shikimate kinase; Pro 97.2 0.00028 6E-09 64.1 4.0 31 227-257 3-33 (169)
383 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.007 1.5E-07 57.3 13.8 38 221-258 16-56 (229)
384 cd03230 ABC_DR_subfamily_A Thi 97.2 0.0013 2.9E-08 59.6 8.5 106 222-341 23-156 (173)
385 PRK13900 type IV secretion sys 97.2 0.00088 1.9E-08 67.4 7.9 70 225-294 160-245 (332)
386 TIGR02655 circ_KaiC circadian 97.2 0.0018 3.8E-08 68.7 10.4 77 221-297 259-366 (484)
387 COG4525 TauB ABC-type taurine 97.2 0.00057 1.2E-08 62.7 5.7 29 221-249 27-55 (259)
388 PRK13948 shikimate kinase; Pro 97.2 0.00076 1.6E-08 62.0 6.6 42 224-267 9-50 (182)
389 PLN03186 DNA repair protein RA 97.2 0.0014 3.1E-08 66.1 9.2 117 221-338 119-271 (342)
390 PRK04040 adenylate kinase; Pro 97.2 0.0014 3E-08 60.6 8.4 30 225-254 2-33 (188)
391 PRK14722 flhF flagellar biosyn 97.2 0.0015 3.3E-08 66.5 9.3 27 223-249 135-161 (374)
392 PRK14974 cell division protein 97.2 0.0034 7.4E-08 63.2 11.6 73 224-296 139-234 (336)
393 COG1120 FepC ABC-type cobalami 97.2 0.0016 3.5E-08 62.8 8.9 51 276-339 148-198 (258)
394 PF08303 tRNA_lig_kinase: tRNA 97.2 0.0037 8E-08 55.9 10.4 133 231-379 5-147 (168)
395 PRK14531 adenylate kinase; Pro 97.2 0.0004 8.7E-09 63.7 4.5 36 226-263 3-38 (183)
396 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.0013 2.7E-08 63.3 7.9 55 274-342 147-201 (254)
397 TIGR00767 rho transcription te 97.2 0.0012 2.7E-08 67.3 8.2 27 224-250 167-193 (415)
398 cd03213 ABCG_EPDR ABCG transpo 97.2 0.0027 5.8E-08 58.8 9.7 105 222-340 32-171 (194)
399 PRK06217 hypothetical protein; 97.2 0.0004 8.7E-09 63.7 4.1 31 227-257 3-33 (183)
400 cd02021 GntK Gluconate kinase 97.2 0.0004 8.6E-09 61.3 3.9 27 228-254 2-28 (150)
401 cd03227 ABC_Class2 ABC-type Cl 97.1 0.0024 5.1E-08 57.4 9.0 23 225-247 21-43 (162)
402 cd03287 ABC_MSH3_euk MutS3 hom 97.1 0.0038 8.2E-08 59.2 10.5 24 224-247 30-53 (222)
403 TIGR01613 primase_Cterm phage/ 97.1 0.0024 5.1E-08 63.5 9.6 137 195-360 53-202 (304)
404 COG0563 Adk Adenylate kinase a 97.1 0.00071 1.5E-08 61.9 5.4 34 227-262 2-35 (178)
405 PRK13541 cytochrome c biogenes 97.1 0.0015 3.2E-08 60.5 7.6 29 221-249 22-50 (195)
406 COG1136 SalX ABC-type antimicr 97.1 0.0016 3.5E-08 61.5 7.9 26 222-247 28-53 (226)
407 TIGR02655 circ_KaiC circadian 97.1 0.0049 1.1E-07 65.3 12.4 110 221-339 17-166 (484)
408 PRK13833 conjugal transfer pro 97.1 0.0018 3.9E-08 64.8 8.5 69 225-293 144-224 (323)
409 cd01428 ADK Adenylate kinase ( 97.1 0.00044 9.5E-09 63.5 3.9 36 228-265 2-37 (194)
410 PTZ00088 adenylate kinase 1; P 97.1 0.00056 1.2E-08 65.2 4.7 38 225-264 6-43 (229)
411 PRK14530 adenylate kinase; Pro 97.1 0.00053 1.1E-08 64.6 4.6 30 227-256 5-34 (215)
412 PTZ00202 tuzin; Provisional 97.1 0.015 3.2E-07 60.1 15.0 62 188-259 259-320 (550)
413 PF01745 IPT: Isopentenyl tran 97.1 0.00094 2E-08 62.2 5.9 135 228-380 4-144 (233)
414 COG2274 SunT ABC-type bacterio 97.1 0.0024 5.1E-08 70.4 10.1 63 276-360 619-681 (709)
415 cd02020 CMPK Cytidine monophos 97.1 0.00049 1.1E-08 60.0 3.9 30 228-257 2-31 (147)
416 TIGR02525 plasmid_TraJ plasmid 97.1 0.0013 2.8E-08 67.1 7.5 69 226-294 150-235 (372)
417 TIGR02533 type_II_gspE general 97.1 0.0017 3.6E-08 68.8 8.5 96 186-295 217-322 (486)
418 cd03217 ABC_FeS_Assembly ABC-t 97.1 0.0021 4.6E-08 59.7 8.3 107 221-341 22-165 (200)
419 cd02027 APSK Adenosine 5'-phos 97.1 0.0021 4.6E-08 57.0 7.8 35 228-262 2-39 (149)
420 cd03232 ABC_PDR_domain2 The pl 97.1 0.0044 9.6E-08 57.2 10.2 106 222-341 30-169 (192)
421 cd03115 SRP The signal recogni 97.1 0.0073 1.6E-07 54.6 11.4 33 227-259 2-37 (173)
422 TIGR01313 therm_gnt_kin carboh 97.1 0.00047 1E-08 61.7 3.5 27 228-254 1-27 (163)
423 PRK13894 conjugal transfer ATP 97.0 0.0019 4.2E-08 64.6 8.1 70 225-294 148-229 (319)
424 PRK06547 hypothetical protein; 97.0 0.00067 1.5E-08 61.8 4.4 33 224-256 14-46 (172)
425 cd03215 ABC_Carb_Monos_II This 97.0 0.0032 6.9E-08 57.6 8.9 107 221-341 22-165 (182)
426 PF13521 AAA_28: AAA domain; P 97.0 0.0013 2.9E-08 58.9 6.3 34 228-262 2-35 (163)
427 PRK08154 anaerobic benzoate ca 97.0 0.002 4.2E-08 64.3 8.0 35 222-256 130-164 (309)
428 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0049 1.1E-07 57.7 10.2 23 225-247 29-51 (204)
429 COG2804 PulE Type II secretory 97.0 0.0016 3.4E-08 67.8 7.4 95 187-296 234-339 (500)
430 TIGR02788 VirB11 P-type DNA tr 97.0 0.0011 2.3E-08 66.1 6.0 74 221-294 140-228 (308)
431 PRK06696 uridine kinase; Valid 97.0 0.0016 3.4E-08 61.7 6.8 55 197-261 4-61 (223)
432 PLN02200 adenylate kinase fami 97.0 0.00082 1.8E-08 64.3 4.9 41 223-265 41-81 (234)
433 PRK11889 flhF flagellar biosyn 97.0 0.0095 2.1E-07 60.9 12.7 97 196-296 216-332 (436)
434 PRK10436 hypothetical protein; 97.0 0.0017 3.6E-08 68.2 7.5 94 187-294 194-297 (462)
435 PLN02674 adenylate kinase 97.0 0.0015 3.2E-08 62.8 6.5 39 224-264 30-68 (244)
436 PRK13764 ATPase; Provisional 97.0 0.00086 1.9E-08 72.1 5.4 71 224-295 256-335 (602)
437 PRK12724 flagellar biosynthesi 97.0 0.01 2.2E-07 61.3 12.9 26 224-249 222-247 (432)
438 PRK05057 aroK shikimate kinase 97.0 0.00076 1.6E-08 61.4 4.3 34 225-258 4-37 (172)
439 PF13245 AAA_19: Part of AAA d 97.0 0.0012 2.7E-08 51.6 4.9 24 226-249 11-35 (76)
440 PF13481 AAA_25: AAA domain; P 97.0 0.0015 3.3E-08 59.9 6.3 75 225-299 32-156 (193)
441 PRK03731 aroL shikimate kinase 97.0 0.00082 1.8E-08 60.7 4.4 31 226-256 3-33 (171)
442 COG1125 OpuBA ABC-type proline 97.0 0.0015 3.2E-08 62.4 6.0 26 224-249 26-51 (309)
443 PRK13946 shikimate kinase; Pro 97.0 0.00084 1.8E-08 61.7 4.3 33 225-257 10-42 (184)
444 PRK09302 circadian clock prote 97.0 0.0076 1.6E-07 64.3 12.2 110 221-339 27-176 (509)
445 COG1102 Cmk Cytidylate kinase 97.0 0.00075 1.6E-08 60.0 3.7 28 228-255 3-30 (179)
446 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0022 4.8E-08 61.7 7.4 34 228-261 2-38 (249)
447 PF00448 SRP54: SRP54-type pro 97.0 0.0084 1.8E-07 55.7 11.0 102 225-339 1-125 (196)
448 TIGR02538 type_IV_pilB type IV 97.0 0.002 4.4E-08 69.4 7.8 95 187-295 292-396 (564)
449 PRK13538 cytochrome c biogenes 96.9 0.0019 4.1E-08 60.2 6.7 29 221-249 23-51 (204)
450 PRK09544 znuC high-affinity zi 96.9 0.0031 6.8E-08 60.9 8.3 29 221-249 26-54 (251)
451 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00086 1.9E-08 61.2 4.2 35 227-263 5-39 (188)
452 smart00487 DEXDc DEAD-like hel 96.9 0.0033 7.2E-08 56.6 8.0 24 226-249 25-49 (201)
453 PRK14528 adenylate kinase; Pro 96.9 0.00089 1.9E-08 61.7 4.2 34 227-262 3-36 (186)
454 cd03229 ABC_Class3 This class 96.9 0.0045 9.8E-08 56.4 8.8 107 222-341 23-162 (178)
455 PRK08099 bifunctional DNA-bind 96.9 0.0025 5.4E-08 65.8 7.9 39 225-263 219-257 (399)
456 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.0017 3.8E-08 65.0 6.5 60 192-259 62-123 (358)
457 cd03278 ABC_SMC_barmotin Barmo 96.9 0.0093 2E-07 55.5 11.0 22 227-248 24-45 (197)
458 COG4088 Predicted nucleotide k 96.9 0.0012 2.5E-08 61.1 4.7 23 228-250 4-26 (261)
459 PRK14527 adenylate kinase; Pro 96.9 0.00083 1.8E-08 62.0 3.9 32 224-255 5-36 (191)
460 PF13238 AAA_18: AAA domain; P 96.9 0.00073 1.6E-08 57.3 3.2 22 228-249 1-22 (129)
461 PRK13851 type IV secretion sys 96.9 0.0011 2.4E-08 67.0 4.9 72 223-294 160-246 (344)
462 PRK10867 signal recognition pa 96.9 0.0091 2E-07 62.1 11.8 74 223-296 98-195 (433)
463 PF00406 ADK: Adenylate kinase 96.9 0.0014 3E-08 58.0 5.1 35 230-266 1-35 (151)
464 PRK13540 cytochrome c biogenes 96.9 0.0024 5.3E-08 59.3 6.9 28 222-249 24-51 (200)
465 PRK02496 adk adenylate kinase; 96.9 0.00098 2.1E-08 61.0 4.1 29 227-255 3-31 (184)
466 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0025 5.5E-08 64.0 7.4 40 226-265 163-202 (325)
467 PF13086 AAA_11: AAA domain; P 96.9 0.0014 3.1E-08 61.3 5.3 23 227-249 19-41 (236)
468 COG2874 FlaH Predicted ATPases 96.9 0.0051 1.1E-07 57.3 8.7 127 211-349 12-176 (235)
469 TIGR01351 adk adenylate kinase 96.9 0.00092 2E-08 62.7 4.0 34 228-263 2-35 (210)
470 PF09848 DUF2075: Uncharacteri 96.9 0.0015 3.3E-08 66.3 5.8 23 227-249 3-25 (352)
471 COG2805 PilT Tfp pilus assembl 96.9 0.0027 5.8E-08 62.0 7.1 72 225-296 124-210 (353)
472 PRK13543 cytochrome c biogenes 96.9 0.0047 1E-07 58.0 8.7 28 221-248 33-60 (214)
473 PHA02530 pseT polynucleotide k 96.9 0.0032 7E-08 62.2 7.9 36 226-262 3-38 (300)
474 COG1134 TagH ABC-type polysacc 96.9 0.0038 8.2E-08 59.3 7.8 55 273-341 154-208 (249)
475 TIGR00064 ftsY signal recognit 96.9 0.012 2.7E-07 57.5 11.7 37 223-259 70-109 (272)
476 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0023 5E-08 55.6 5.9 30 223-252 20-49 (133)
477 PF02562 PhoH: PhoH-like prote 96.9 0.0041 8.8E-08 58.1 7.9 23 227-249 21-43 (205)
478 COG2884 FtsE Predicted ATPase 96.8 0.0091 2E-07 54.7 9.8 52 276-341 147-198 (223)
479 cd03231 ABC_CcmA_heme_exporter 96.8 0.0025 5.5E-08 59.2 6.5 28 222-249 23-50 (201)
480 PRK00279 adk adenylate kinase; 96.8 0.0011 2.4E-08 62.4 4.1 35 227-263 2-36 (215)
481 cd01125 repA Hexameric Replica 96.8 0.0045 9.8E-08 59.2 8.3 21 228-248 4-24 (239)
482 cd03285 ABC_MSH2_euk MutS2 hom 96.8 0.011 2.5E-07 55.9 11.0 24 224-247 29-52 (222)
483 TIGR01448 recD_rel helicase, p 96.8 0.009 1.9E-07 66.3 11.7 71 226-296 339-428 (720)
484 PRK11176 lipid transporter ATP 96.8 0.0066 1.4E-07 65.8 10.4 28 222-249 366-393 (582)
485 TIGR01189 ccmA heme ABC export 96.8 0.0034 7.4E-08 58.2 7.1 29 221-249 22-50 (198)
486 PRK09302 circadian clock prote 96.8 0.0052 1.1E-07 65.6 9.4 108 221-338 269-407 (509)
487 PRK11650 ugpC glycerol-3-phosp 96.8 0.002 4.4E-08 65.5 6.0 28 222-249 27-54 (356)
488 cd03239 ABC_SMC_head The struc 96.8 0.0087 1.9E-07 54.7 9.6 24 227-250 24-47 (178)
489 COG2074 2-phosphoglycerate kin 96.8 0.059 1.3E-06 51.5 15.1 187 223-436 87-285 (299)
490 PRK10416 signal recognition pa 96.8 0.029 6.2E-07 56.2 14.0 35 224-258 113-150 (318)
491 cd02022 DPCK Dephospho-coenzym 96.8 0.01 2.2E-07 54.2 9.9 36 228-266 2-37 (179)
492 PF13479 AAA_24: AAA domain 96.8 0.0028 6E-08 59.7 6.3 68 225-296 3-80 (213)
493 COG1936 Predicted nucleotide k 96.8 0.00093 2E-08 60.1 2.9 30 227-257 2-31 (180)
494 COG1119 ModF ABC-type molybden 96.8 0.012 2.7E-07 55.9 10.5 62 275-348 180-241 (257)
495 COG1118 CysA ABC-type sulfate/ 96.8 0.0069 1.5E-07 59.3 9.0 27 222-248 25-51 (345)
496 cd03276 ABC_SMC6_euk Eukaryoti 96.8 0.0056 1.2E-07 57.0 8.2 51 283-344 130-180 (198)
497 PF06414 Zeta_toxin: Zeta toxi 96.8 0.0039 8.4E-08 58.0 7.1 41 223-263 13-54 (199)
498 PRK14526 adenylate kinase; Pro 96.8 0.0019 4.1E-08 60.8 4.9 35 227-263 2-36 (211)
499 PF10236 DAP3: Mitochondrial r 96.7 0.092 2E-06 52.4 17.2 46 356-402 258-307 (309)
500 TIGR03499 FlhF flagellar biosy 96.7 0.0075 1.6E-07 59.3 9.3 36 224-259 193-233 (282)
No 1
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-114 Score=812.02 Aligned_cols=440 Identities=81% Similarity=1.254 Sum_probs=428.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCccccccccccCCCccccCCCccCCchHHHHHHHHHHHHHHHHHH
Q 013281 1 MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLM 80 (446)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (446)
|||+||||.|..+ ++++.+++|++|+|| +|+++|||+++.+||++|+|||+|+|+++|++++++++||+|||+|
T Consensus 1 MGQ~qSG~~g~~K-----~~~~dk~eK~~~~~~-v~~r~gr~k~~~kGpdAa~klP~V~p~~~C~lrlLk~~RIkDyLLM 74 (440)
T KOG0726|consen 1 MGQGQSGGLGDRK-----GKKDDKKEKKKYEPP-VPTRVGRKKKKGKGPDAASKLPTVTPHTQCKLKLLKLERIKDYLLM 74 (440)
T ss_pred CCccccCCCCCCc-----ccccccccccccCCC-CcchhhhhhhcccCcchhhcCCccccchhHHHHHHHHHHHHHHHHH
Confidence 9999997653222 233556789999988 9999999999889999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEec
Q 013281 81 EEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN 160 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~ 160 (446)
|+||++||+++++.+++.+++|.++++||++|+++|+++|++|++|+||+++.+++|||+|+||+|++.|+|||+|++++
T Consensus 75 EEEFI~NQe~~k~~e~~~ee~r~~vd~lRGtPmsvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~ 154 (440)
T KOG0726|consen 75 EEEFIRNQERLKPQEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNH 154 (440)
T ss_pred HHHHHhhccccCCchhhhHHHHhHHHhhcCCccccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHH
Q 013281 161 KVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240 (446)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~ 240 (446)
...+++++|.++.||++++|+++++|..+|+||+|++++|++|++.+++||.||++|+.+|++||+||+|||+||||||+
T Consensus 155 k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTL 234 (440)
T KOG0726|consen 155 KVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTL 234 (440)
T ss_pred ccceEEEEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHH
Q 013281 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (446)
Q Consensus 241 Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (446)
||+|+|+++.++|+++.+++|+++|+|++++.++++|..|..++|+|+||||||+++++|+++++++.+++|+++++||+
T Consensus 235 LAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLN 314 (440)
T KOG0726|consen 235 LAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 314 (440)
T ss_pred HHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHH
Q 013281 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (446)
Q Consensus 321 ~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~d 400 (446)
++|||+++++|.||||||+.+.|||+|+||||+|+.|+|+.||...++.||.+|+++|.+..+++++.+....+.+||+|
T Consensus 315 QldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAd 394 (440)
T KOG0726|consen 315 QLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGAD 394 (440)
T ss_pred hccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhccCCCCCCCC
Q 013281 401 IKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 446 (446)
Q Consensus 401 i~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~~~~~~~~ 446 (446)
|+++|++|+++|+++.++.|+++||.+|.++|+++|++.+|++||+
T Consensus 395 IkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~~g~~egly~ 440 (440)
T KOG0726|consen 395 IKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKKEGVPEGLYL 440 (440)
T ss_pred HHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcccCCcccccC
Confidence 9999999999999999999999999999999999999999999996
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-90 Score=664.72 Aligned_cols=396 Identities=57% Similarity=0.885 Sum_probs=372.3
Q ss_pred CCccccCCCccCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeE
Q 013281 48 GPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHA 127 (446)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 127 (446)
++...+..+..++...|..+...++++...+..+...+.... .....++...+++++.++.+|+.+|++.+.++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~~~ 87 (406)
T COG1222 10 LGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEG--LRLKREVDRLREEIERLKEPPLIVGTVLEVLDDGRA 87 (406)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCceE
Confidence 566677788888888999999988888888876444433332 223455666677899999999999999999999999
Q ss_pred EEecccCCceeEEecccccccccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHh
Q 013281 128 IVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAV 207 (446)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i 207 (446)
+|+++++++|+|++.+++|++.|+||++|.|++++++++++|+.+.||+++.|.+++.|.++|+||+|+++||++|+|+|
T Consensus 88 iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~V 167 (406)
T COG1222 88 IVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVV 167 (406)
T ss_pred EEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeE
Q 013281 208 ELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSI 287 (446)
Q Consensus 208 ~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~I 287 (446)
++||++|++|+++|+.||+|||||||||||||+||+|+|++++++|+++.+|+|+++|+|++++.++++|..|+.++|||
T Consensus 168 ELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsI 247 (406)
T COG1222 168 ELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSI 247 (406)
T ss_pred cccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHH
Q 013281 288 VFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR 367 (446)
Q Consensus 288 L~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er 367 (446)
|||||||+++++|+++.+++++++|++|++||++||||++.++|.||||||+++.|||||+||||||+.|+||+|+.+.|
T Consensus 248 IFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR 327 (406)
T COG1222 248 IFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGR 327 (406)
T ss_pred EEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhccCCCCCCC
Q 013281 368 RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLY 445 (446)
Q Consensus 368 ~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~~~~~~~ 445 (446)
.+||++|+++|++..++|++.||..++|+|||||+++|++|++.|+++.+..||++||.+|+++++..++.......|
T Consensus 328 ~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~~~~~~~~~ 405 (406)
T COG1222 328 AEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKKKLSSTARY 405 (406)
T ss_pred HHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999977665544333
No 3
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=9.5e-84 Score=659.40 Aligned_cols=438 Identities=79% Similarity=1.218 Sum_probs=418.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCccccccccccCCCccccCCCccCCchHHHHHHHHHHHHHHHHHH
Q 013281 1 MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLM 80 (446)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (446)
|||+|++|++ + ++++++++|+||+|||||+++||| ||++|+++++|||+|+|+++|+++++++++++++|++
T Consensus 1 ~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (438)
T PTZ00361 1 MGNAQGQGNN----Q---KDKNKKKEKKKKESPPPPHEIKRK-KKRKGPDAASKLPKVTPNTKCRLRLLKLERIKDYLLL 72 (438)
T ss_pred CCCCCCCCCC----c---ccCCccccccccCCCCCcchhhhh-ccccCCCccccCCCcCCchhhHHHHHHHHHHHHHHHH
Confidence 9999986552 1 344667789999999777888854 5578999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEec
Q 013281 81 EEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN 160 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~ 160 (446)
|++|+++++.++..+.++++.+++++.++++|+.+|++.+.+++++++|+++++++|++++.+++|++.++||++|.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~ 152 (438)
T PTZ00361 73 EEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHN 152 (438)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcC
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHH
Q 013281 161 KVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240 (446)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~ 240 (446)
.+..++++++.+.|+++..|++++.|..+|+||+|++.++++|++++..|+.+|++|..+|+.+++++|||||||||||+
T Consensus 153 ~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~ 232 (438)
T PTZ00361 153 KTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTL 232 (438)
T ss_pred CCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHH
Q 013281 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (446)
Q Consensus 241 Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (446)
+|+++|++++.+|+.+.++++.++|+|+.+..++.+|..|..+.|+||||||||.++.++.+..++++.+.+++++++|.
T Consensus 233 LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~ 312 (438)
T PTZ00361 233 LAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLN 312 (438)
T ss_pred HHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887778888899999999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHH
Q 013281 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (446)
Q Consensus 321 ~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~d 400 (446)
+++++....++.||+|||+++.+|++++|||||++.|+|+.|+.++|.+||+.++.++.+..++++..++..++|||++|
T Consensus 313 ~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAd 392 (438)
T PTZ00361 313 QLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGAD 392 (438)
T ss_pred HHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHH
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhccCCCCCCCC
Q 013281 401 IKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 446 (446)
Q Consensus 401 i~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~~~~~~~~ 446 (446)
|+++|++|++.|+++++..|+.+||.+|+++++..++...|++||+
T Consensus 393 I~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~~~~~~~~~~ 438 (438)
T PTZ00361 393 IKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKGNIPEGLYL 438 (438)
T ss_pred HHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhcccCCCccccC
Confidence 9999999999999999999999999999999999999999999996
No 4
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-76 Score=545.15 Aligned_cols=373 Identities=52% Similarity=0.896 Sum_probs=361.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEe
Q 013281 62 SKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGI 141 (446)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (446)
...+.++.+|++..++++.++++++.+++- ++.++...+++++.+++.|+.+|.+.|.+|.+++||.+.+|++|||++
T Consensus 28 ~dly~r~k~le~~le~l~vqe~yik~e~~~--lkre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttgsny~vri 105 (408)
T KOG0727|consen 28 EDLYVRYKKLERELELLEVQEDYIKDEQRN--LKRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTGSNYYVRI 105 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccCCceEEee
Confidence 478999999999999999999999988753 344555667789999999999999999999999999999999999999
Q ss_pred cccccccccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhC
Q 013281 142 LSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221 (446)
Q Consensus 142 ~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g 221 (446)
++.+|++.++|+++|.||..+...+++++.+.|+..+++..+..|.++|.||+|++-+++++++++++||.|.++|+++|
T Consensus 106 lstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qig 185 (408)
T KOG0727|consen 106 LSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIG 185 (408)
T ss_pred hhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCccccccccc
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~ 301 (446)
+.||+|||+|||||||||+||+|+|+.+.+.|+++++|++.++|+|++++.++++|..|++++|+||||||||+++++|+
T Consensus 186 idpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrf 265 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRF 265 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC
Q 013281 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (446)
Q Consensus 302 ~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~ 381 (446)
+.+++.++++|+.|++||++||||+...+|.|||+||+.+.+||+|+||||++++|+||+||..+++-+|...+++|+++
T Consensus 266 daqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 266 DAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred cccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 013281 382 DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 382 ~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~ 436 (446)
+++|++.+..+.+..|++||.++|++|++.|+++++..|...||++|+..++.+.
T Consensus 346 ~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 346 DEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred cccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCc
Confidence 9999999999999999999999999999999999999999999999999988654
No 5
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-68 Score=491.22 Aligned_cols=374 Identities=48% Similarity=0.795 Sum_probs=350.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcchhHH----HHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEe
Q 013281 66 LRLLKLERIKDYLLMEEEFVTNQERLKPQEE----KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGI 141 (446)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (446)
++.+..+.+.+....-.+..++..+++.+.. +..-.++++.-|+.....+|.+.+..++...+|.......|++.+
T Consensus 18 ~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhpegKyvvdv 97 (404)
T KOG0728|consen 18 LRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHPEGKYVVDV 97 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcCCCcEEEec
Confidence 4445556666665555555555555544433 334457888889999999999999999999999999999999999
Q ss_pred cccccccccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhC
Q 013281 142 LSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221 (446)
Q Consensus 142 ~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g 221 (446)
...+|-..+.++..|.|..+++....+++..+||+++.|-+++.|+.+|+-++|++.+|++|++.|++|.+||++|+.+|
T Consensus 98 ~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLG 177 (404)
T KOG0728|consen 98 DKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG 177 (404)
T ss_pred cCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCccccccccc
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~ 301 (446)
+..|+|||||||||||||+||+++|+.+.+.|++++++++.++|+|++.+.++++|-.|++++|+|||+||||.+++.|.
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~ 257 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRV 257 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC
Q 013281 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (446)
Q Consensus 302 ~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~ 381 (446)
+++++++.++|+++++||+++|||....++.||+|||+.+.|||+|+||||+|+.|+||+|+.+.|.+||++|.++|++.
T Consensus 258 e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~ 337 (404)
T KOG0728|consen 258 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT 337 (404)
T ss_pred cCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhccC
Q 013281 382 DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEG 439 (446)
Q Consensus 382 ~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~ 439 (446)
..+++..+|....|.||++++.+|++|+++|+++.+-.||++||+.|+.+++.+..+.
T Consensus 338 rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 338 RGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred cccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999877654
No 6
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-67 Score=483.32 Aligned_cols=351 Identities=50% Similarity=0.854 Sum_probs=336.1
Q ss_pred hcchhHHHHHHHHHHHHHhhCCCccccccccccc-------C--------------CeEEEecccCCceeEEeccccccc
Q 013281 90 RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELID-------E--------------NHAIVSSSVGPEYYVGILSFVDKD 148 (446)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 148 (446)
+.....+++.+-.++++--+..|..++++.|++| + ..+++.+|+...||..+...+|++
T Consensus 49 e~~~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg~n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~ 128 (424)
T KOG0652|consen 49 ELQAMKEKIKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEEDSGANIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPD 128 (424)
T ss_pred HHHHHHHHHHhhHHHhhccccCchHHhhHHHHhcCCcccchhccCCcccccccccceeEEEecccceeeeeeeecccChh
Confidence 3444456666667778888899999999999988 2 246888999999999999999999
Q ss_pred ccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceE
Q 013281 149 QLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGV 228 (446)
Q Consensus 149 ~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~v 228 (446)
.++||..|.++.+++.+.+.++.+.|..+..|.++..|..+|+||+|++.+|++|.++|.+|+.|++.|+.+|+.||+||
T Consensus 129 ~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGv 208 (424)
T KOG0652|consen 129 KLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGV 208 (424)
T ss_pred hCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCc
Q 013281 229 ILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE 308 (446)
Q Consensus 229 LL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~ 308 (446)
|+|||||||||++|||+|.+++++|+.+.++.+++.|+|++.+.+++.|..|++.+|+||||||+|+++.+|+++...++
T Consensus 209 LmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GD 288 (424)
T KOG0652|consen 209 LMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGD 288 (424)
T ss_pred EeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHH
Q 013281 309 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEE 388 (446)
Q Consensus 309 ~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~ 388 (446)
+++|+++++||+++|||.+...|.||++||+.+.|||+|+|+||++++|+||.|+.+.|..|+++|.++|++..++++++
T Consensus 289 REVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeE 368 (424)
T KOG0652|consen 289 REVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEE 368 (424)
T ss_pred HHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhccCC
Q 013281 389 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGV 440 (446)
Q Consensus 389 la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~~ 440 (446)
||+.|++|+|++.+++|-+|++.|+++....|+.+||..++..+..+|+..+
T Consensus 369 LaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakKka~l 420 (424)
T KOG0652|consen 369 LARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKKKASL 420 (424)
T ss_pred HhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999888765
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.3e-59 Score=478.55 Aligned_cols=374 Identities=51% Similarity=0.879 Sum_probs=347.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEec
Q 013281 63 KCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGIL 142 (446)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (446)
.++.++.++++..+.+..+.+....+. +...++.++.+++++.++.+|+.+|++.+.+++++++|.++++++|++.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 96 (398)
T PTZ00454 19 DLYEKLKELEKELEFLDIQEEYIKEEQ--KNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRIL 96 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEecc
Confidence 555666666666666655555544443 345566677888899999999999999999999999999999999999999
Q ss_pred ccccccccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCC
Q 013281 143 SFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI 222 (446)
Q Consensus 143 ~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~ 222 (446)
+.+|++.++||+.|.++..+..++.+++.+.++.+..|.+...|.++|+||+|++.++++|++++..|+.+|++|..+|+
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl 176 (398)
T PTZ00454 97 STLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI 176 (398)
T ss_pred cccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD 302 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~ 302 (446)
.+|+++|||||||||||++|+++|++++.+|+.+.++++..+|+|+++..++.+|..|+...|+||||||+|.++.++.+
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~ 256 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFD 256 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC
Q 013281 303 AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (446)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~ 382 (446)
..++.+.+.++.+.++|+.++++....+++||+|||+++.+||+++|||||++.|+|+.|+.++|..||+.++.++.+..
T Consensus 257 ~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~ 336 (398)
T PTZ00454 257 AQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE 336 (398)
T ss_pred ccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc
Confidence 77777788999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhcc
Q 013281 383 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 383 ~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~ 438 (446)
++++..++..++||||+||+++|++|++.|+++++..|+++||.+|+++++.++..
T Consensus 337 dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~~ 392 (398)
T PTZ00454 337 EVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTDR 392 (398)
T ss_pred ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999876543
No 8
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-60 Score=440.04 Aligned_cols=329 Identities=47% Similarity=0.816 Sum_probs=302.1
Q ss_pred CCCcccccccccccCCe----EEEecccCCceeEEecccccccccCCcceEEEecchhhhhhccccccchhhhhhhcccC
Q 013281 110 GSPMSVGNLEELIDENH----AIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185 (446)
Q Consensus 110 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 185 (446)
..|+.++..-++++.++ .+++-..-..|+|..-..+++..++.|..|-.+.+.+.+.--|+...||.+..|.++..
T Consensus 92 eqplqvarctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veek 171 (435)
T KOG0729|consen 92 EQPLQVARCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEK 171 (435)
T ss_pred cCCceeheeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecC
Confidence 45677776666665532 12222222233334445566677899999999999999988899999999999999999
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
|.++|+|++|..++|+.|++.++.|+.||+.|..+|+.||+|||||||||||||++|+|+|+.+++.|+++-+|+|+++|
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky 251 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 251 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCh
Q 013281 266 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDP 345 (446)
Q Consensus 266 ~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~ 345 (446)
+|++.+.++++|+.|+....||||+||||++++.|++...+++.++|++++++++++|||+.++++.|++|||+|+.|||
T Consensus 252 vgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldp 331 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 331 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 013281 346 ALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425 (446)
Q Consensus 346 al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~ 425 (446)
+|+||||++++++|.+|+.+.|..||++|...|.+..++-++.||..+..-+|++|+++|++|++.|++..+...|..||
T Consensus 332 allrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdf 411 (435)
T KOG0729|consen 332 ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDF 411 (435)
T ss_pred hhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc
Q 013281 426 KKAKEKVMFKKKE 438 (446)
Q Consensus 426 ~~A~~~v~~~~~~ 438 (446)
.+|+.+++..-..
T Consensus 412 l~av~kvvkgy~k 424 (435)
T KOG0729|consen 412 LDAVNKVVKGYAK 424 (435)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999875443
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.7e-55 Score=445.27 Aligned_cols=359 Identities=52% Similarity=0.897 Sum_probs=335.8
Q ss_pred hhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEecchhhhhh
Q 013281 88 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 167 (446)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~ 167 (446)
...++......++.+++++.+..+|..++++.+.+++.+.++..+++..|++++.++++...+.+|..|.+++....++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~ 107 (389)
T PRK03992 28 EAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVE 107 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccccCCHhHCCCCCEEEEcCcchhhhh
Confidence 33444556677778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 013281 168 LLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~ 247 (446)
+++...++.+..+.+...|..+|+||+|+++++++|++.+..|+.++++|..+|+.+|+++|||||||||||++|+++|+
T Consensus 108 ~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 108 VLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred cccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 99999999888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC
Q 013281 248 STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (446)
Q Consensus 248 ~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 327 (446)
+++.+|+.++++++...|+|+.+..++.+|..|..+.|+||||||+|.++..+.+...+++.+.++++.+++.+++++..
T Consensus 188 ~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 188 ETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred HhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999999999999999888776666678899999999999999888
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHH
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTE 407 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~ 407 (446)
.+++.||+|||+++.+|++++|||||++.|+|++|+.++|.+||+.++..+.+..++++..++..++||+++||+++|++
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~e 347 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTE 347 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhhhccC---CCCCCCC
Q 013281 408 AGLLALRERRMKVTHTDFKKAKEKVMFKKKEG---VPEGLYM 446 (446)
Q Consensus 408 A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~---~~~~~~~ 446 (446)
|++.|+++++..|+.+||.+|+.++...+... .+..||.
T Consensus 348 A~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~~~~~~~~~~~ 389 (389)
T PRK03992 348 AGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKDSMEEPGVMFA 389 (389)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHhcccccccccccccccC
Confidence 99999999999999999999999998765554 3566663
No 10
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-56 Score=422.61 Aligned_cols=341 Identities=44% Similarity=0.776 Sum_probs=326.3
Q ss_pred HHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEecchhhhhhccccccch
Q 013281 96 EKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDP 175 (446)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~ 175 (446)
+....-...+..++.....++.+.+.+++.+.+|..++|+.|++.+...+|+..+..|..|.++-++..+...++.++|
T Consensus 38 k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd- 116 (388)
T KOG0651|consen 38 KKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD- 116 (388)
T ss_pred hhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-
Confidence 3333445667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 176 MVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 176 ~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
++..|..+.....+|+.++|+-.++.++++.|+.|+.+|++|.++|+++|++++||||||||||++|++||..++++|+.
T Consensus 117 ~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~ 196 (388)
T KOG0651|consen 117 LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK 196 (388)
T ss_pred HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEE
Confidence 88788888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 013281 256 VVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL 335 (446)
Q Consensus 256 v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~ 335 (446)
++.+++.++|+|++.+.+++.|..|+.+.|||||+||||++++.+++..+..++++|++|++|++++++|+..+.|.+||
T Consensus 197 v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 197 VVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred eeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 336 ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 336 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
|||+++.|+|+|+||||+++.+++|.|+...|..|++.|...+.....++.+.+.+..+||+|+|++++|++|.+.|+++
T Consensus 277 atNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 277 ATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred ecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhhhc
Q 013281 416 RRMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 416 ~~~~It~~d~~~A~~~v~~~~~ 437 (446)
.+..+.++||.+++.++-..++
T Consensus 357 ~~~~vl~Ed~~k~vrk~~~~kk 378 (388)
T KOG0651|consen 357 ERDEVLHEDFMKLVRKQADAKK 378 (388)
T ss_pred hhHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999998776554
No 11
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.7e-53 Score=430.02 Aligned_cols=343 Identities=56% Similarity=0.935 Sum_probs=326.0
Q ss_pred hcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEecchhhhhhcc
Q 013281 90 RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLL 169 (446)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l 169 (446)
+.+..+++.++.+++++.++.+|..++++.+.+++...++.++++.+|++++.+|+++..+++|+.|.++..+..++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l 100 (364)
T TIGR01242 21 EKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVL 100 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeec
Confidence 33456677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 170 QDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+...++.+..+.+...|..+|+||+|+++++++|++++..|+.++++|..+|+.+|+++|||||||||||++|+++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 101 PTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred ccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCC
Q 013281 250 SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329 (446)
Q Consensus 250 ~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 329 (446)
+.+|+.+.++++...|+|+....++.+|..+....|+||||||+|.++..+.+...+++.+.++++.+++.+++++...+
T Consensus 181 ~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 181 NATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred CCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999999999999999999999999999999988776666777888999999999999987778
Q ss_pred CeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHH
Q 013281 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAG 409 (446)
Q Consensus 330 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~ 409 (446)
++.||+|||+++.+|+++++||||++.|+|+.|+.++|.+||+.++..+.+..++++..++..+.||+|+||.++|++|+
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHhCCCCccHHHHHHHHHHH
Q 013281 410 LLALRERRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 410 ~~Al~~~~~~It~~d~~~A~~~v 432 (446)
+.|+++++..|+.+||.+|+.++
T Consensus 341 ~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 341 MFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHhCCCccCHHHHHHHHHHh
Confidence 99999999999999999999886
No 12
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-53 Score=434.68 Aligned_cols=253 Identities=46% Similarity=0.781 Sum_probs=239.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
....|+++|+||+|+++++++|++.|.+|+.||+.|.++|+.+|+|||||||||||||++|+++|++++.+|+.|.+.++
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL 504 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL 504 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
+++|+|++++.++++|..|+..+||||||||||+++..|..+.+ ....+.|.+||++|||+....+|.||+|||+|+
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 505 FSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred HHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChh
Confidence 99999999999999999999999999999999999999863332 445689999999999999999999999999999
Q ss_pred CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--CCC
Q 013281 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER--RMK 419 (446)
Q Consensus 342 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~--~~~ 419 (446)
.||+|++||||||+.|+||+||.+.|++||+.++++|++.+++|++.||..|+||||+||.++|++|++.|+++. ...
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~ 661 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATE 661 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985 568
Q ss_pred ccHHHHHHHHHHHHhhhc
Q 013281 420 VTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 420 It~~d~~~A~~~v~~~~~ 437 (446)
|+.+||.+|++.+..+..
T Consensus 662 i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 662 ITWQHFEEALKAVRPSLT 679 (693)
T ss_pred ccHHHHHHHHHhhcccCC
Confidence 999999999998765543
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-51 Score=415.57 Aligned_cols=259 Identities=39% Similarity=0.665 Sum_probs=239.8
Q ss_pred chhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 013281 174 DPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF 253 (446)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~ 253 (446)
+|..........|.++|+||++++++..+|..+|..|+++|++|+.+|+.+|.|||||||||||||+||+|+|++.+++|
T Consensus 494 QPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 494 QPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred CcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 34444445667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEE
Q 013281 254 LRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKV 333 (446)
Q Consensus 254 i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~v 333 (446)
+.|.+++|+++|+|++++.++.+|..|+.++||||||||+|+|++.|.+.. .....+.+++||.+|||...+.+|.|
T Consensus 574 isVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~v 650 (802)
T KOG0733|consen 574 ISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYV 650 (802)
T ss_pred EeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEE
Confidence 999999999999999999999999999999999999999999999997655 34456889999999999999999999
Q ss_pred EEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHc--cCCCCCccCHHHHHHhCC--CCcHHHHHHHHHHHH
Q 013281 334 ILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS--RMTLADDVNLEEFVMTKD--EFSGADIKAICTEAG 409 (446)
Q Consensus 334 I~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~--~~~~~~~~~l~~la~~t~--g~s~~di~~l~~~A~ 409 (446)
|+|||+|+.+|||++||||||..+++++|+.++|.+||+.++. +.++..++|+++||..+. ||||+||.+||++|.
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAs 730 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREAS 730 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 788999999999999876 999999999999999
Q ss_pred HHHHHhC----------------CCCccHHHHHHHHHHHHhh
Q 013281 410 LLALRER----------------RMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 410 ~~Al~~~----------------~~~It~~d~~~A~~~v~~~ 435 (446)
+.|+++. ...+|..||+.|++++...
T Consensus 731 i~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 731 ILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred HHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 9999862 1247788999999987543
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-49 Score=392.96 Aligned_cols=247 Identities=40% Similarity=0.639 Sum_probs=236.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
..+++|+|+-|.++++++|.|.|++ |++|+-|.++|-+.|+||||+||||||||+||||+|.+.+.||++..++++-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3467899999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
|+|.+.+.++++|..|+..+||||||||||+++.+|.... .....++|++||.+||||..+.+|+||+|||.|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999999885432 2267899999999999999999999999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHH
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 424 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d 424 (446)
++|.||||||++|.+|.||...|.+||+.|+.+..+..++|+.-||+-|.||+|+||.++++.|++.|..++...|+|.|
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~ 533 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKH 533 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 013281 425 FKKAKEKVMFK 435 (446)
Q Consensus 425 ~~~A~~~v~~~ 435 (446)
|+.|..+++..
T Consensus 534 LE~akDrIlMG 544 (752)
T KOG0734|consen 534 LEFAKDRILMG 544 (752)
T ss_pred Hhhhhhheeec
Confidence 99999998764
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-47 Score=395.49 Aligned_cols=256 Identities=39% Similarity=0.675 Sum_probs=233.1
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s 259 (446)
..+-+.|.++|+||||+++++.+|.+.|..||.||++|.. |+++..|||||||||||||++|+|||.++..+|+.|.++
T Consensus 661 iGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGP 739 (953)
T KOG0736|consen 661 IGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGP 739 (953)
T ss_pred cCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCH
Confidence 3455789999999999999999999999999999999965 888899999999999999999999999999999999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC--CCCCeEEEEEe
Q 013281 260 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--SRGDVKVILAT 337 (446)
Q Consensus 260 ~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~--~~~~v~vI~at 337 (446)
+|+++|+|++++.+|++|+.|+..+|||||+||+|.|+++|..++.++. -+.+...+||.++|++. +..+|.||+||
T Consensus 740 ELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFViGAT 818 (953)
T KOG0736|consen 740 ELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGAT 818 (953)
T ss_pred HHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc-cHHHHHHHHHHHhhcccCCCCCceEEEecC
Confidence 9999999999999999999999999999999999999999977655443 36788999999999987 45689999999
Q ss_pred CCCCCCChhhcCCCceeeEEEcCCC-CHHHHHHHHHHHHccCCCCCccCHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHh
Q 013281 338 NRIESLDPALLRPGRIDRKIEFPLP-DIKTRRRIFQIHTSRMTLADDVNLEEFVMTK-DEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 338 n~~~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~~~~~~~~~~~~l~~la~~t-~g~s~~di~~l~~~A~~~Al~~ 415 (446)
|+||.|||+|+||||||..+++.++ |.+.+..+|+..++++.++.++++.++|..+ ..|||||+.+||..|++.|+++
T Consensus 819 NRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 819 NRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred CCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 5566788999999999999999999999987 4799999999999999999987
Q ss_pred C-----------------CCCccHHHHHHHHHHHHhhhc
Q 013281 416 R-----------------RMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 416 ~-----------------~~~It~~d~~~A~~~v~~~~~ 437 (446)
. .-.|+++||.+|.++......
T Consensus 899 ~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 899 TIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 3 135899999999998765543
No 16
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-46 Score=395.47 Aligned_cols=252 Identities=44% Similarity=0.744 Sum_probs=238.8
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
+....++|.|+.|.++++++|.|+|.+ |++|+.|.++|++.|+|+||+||||||||+||+|+|.+.+.||+.+++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 334458999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccC-CCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 263 ~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~-~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
..++|..+..++++|..|+.++||||||||||+++..|.. ...+++.+...+|++||.+||||....+|+|+++||+++
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 9999999999999999999999999999999999998842 344667788899999999999999999999999999999
Q ss_pred CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCc
Q 013281 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420 (446)
Q Consensus 342 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~I 420 (446)
.||++|+||||||+.|.++.|+...|.+||+.|++..++. +++++..+|..|.||+|+||.++|++|+..|.++....|
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999999985 788999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhh
Q 013281 421 THTDFKKAKEKVMFK 435 (446)
Q Consensus 421 t~~d~~~A~~~v~~~ 435 (446)
+..||..|+++++..
T Consensus 542 ~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAG 556 (774)
T ss_pred chhhHHHHHHHHhcc
Confidence 999999999987764
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-46 Score=361.05 Aligned_cols=249 Identities=41% Similarity=0.650 Sum_probs=226.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
+...|.+.|+||.|++++++-|+|+|.+|+..|++|+.+ .+|-+|||++||||||||+||+|||.+++.+|+.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 346788999999999999999999999999999999875 4788999999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCC-CC---eEEEEEe
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR-GD---VKVILAT 337 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-~~---v~vI~at 337 (446)
.++|-|+++++++-+|+.|+.++|++|||||||.|+.+|..+ +.++...+.-.+||.+|||.... .+ |.|++||
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 999999999999999999999999999999999999988543 33444456668999999987543 23 8889999
Q ss_pred CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-
Q 013281 338 NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER- 416 (446)
Q Consensus 338 n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~- 416 (446)
|.||.||.||+| ||...|++|+|+.+.|..++++.+....+.++++++.|+..++||||+||.++|++|.++++++.
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999999962
Q ss_pred ----------------CCCccHHHHHHHHHHHHhh
Q 013281 417 ----------------RMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 417 ----------------~~~It~~d~~~A~~~v~~~ 435 (446)
...|++.||+.|+.++...
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 2459999999999987543
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.3e-44 Score=333.81 Aligned_cols=301 Identities=32% Similarity=0.496 Sum_probs=251.2
Q ss_pred ccCCeEEEecccCCceeEEecccccccc-cCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHH
Q 013281 122 IDENHAIVSSSVGPEYYVGILSFVDKDQ-LEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQI 200 (446)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i 200 (446)
..++..++....-+.|...+.+....+. +.-++.+.+..+. .+ ...+..+..+|+|++|+++++
T Consensus 66 v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~~--------~~-------~~~e~~~~it~ddViGqEeAK 130 (368)
T COG1223 66 VREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLETP--------RE-------EDREIISDITLDDVIGQEEAK 130 (368)
T ss_pred eecCceEeecccccccceeEEEEeCCCCceecceEEEEecCc--------ch-------hhhhhhccccHhhhhchHHHH
Confidence 4456677888888888888877653322 1122222221111 11 112345678999999999999
Q ss_pred HHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHH
Q 013281 201 QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 280 (446)
Q Consensus 201 ~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a 280 (446)
+..+-.+++ |.+|+.|..+ .|++||||||||||||++|+|+|+++..||+.+.+.++++.|+|++.+.++++|+.|
T Consensus 131 ~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA 206 (368)
T COG1223 131 RKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERA 206 (368)
T ss_pred HHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHH
Confidence 998887777 8999988665 599999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcC
Q 013281 281 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~ 360 (446)
+..+|||+||||+|+++-.|.-..- ..++...++.||.+|||+..+.+|+.|+|||+++.||+++++ ||...|+|.
T Consensus 207 ~~~aPcivFiDE~DAiaLdRryQel--RGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~ 282 (368)
T COG1223 207 RKAAPCIVFIDELDAIALDRRYQEL--RGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFK 282 (368)
T ss_pred HhcCCeEEEehhhhhhhhhhhHHHh--cccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeee
Confidence 9999999999999999865522111 123567888999999999999999999999999999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhccC
Q 013281 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK-AICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEG 439 (446)
Q Consensus 361 ~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~-~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~ 439 (446)
+|+.++|.+|++.++.++++.-+.++..++..+.|+||+||+ .++..|...|+.+++..|+.+||+.|+++ .......
T Consensus 283 LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k-~r~~r~~ 361 (368)
T COG1223 283 LPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK-ERKRRAP 361 (368)
T ss_pred CCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh-hccccCC
Confidence 999999999999999999999999999999999999999998 47889999999999999999999999998 3333444
Q ss_pred CCCCCCC
Q 013281 440 VPEGLYM 446 (446)
Q Consensus 440 ~~~~~~~ 446 (446)
-|..||.
T Consensus 362 ~p~h~~~ 368 (368)
T COG1223 362 RPKHLYV 368 (368)
T ss_pred CcccccC
Confidence 4777774
No 19
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-45 Score=370.27 Aligned_cols=224 Identities=40% Similarity=0.703 Sum_probs=211.0
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhc
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~ 266 (446)
+++|.||+|++..+.+|.+.+.. +.||+.|..+|+.||+|||||||||||||+||+|||++++.||+.+++.++++.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 67999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHH-HHHHHHHHHHhcCCCCC----CCeEEEEEeCCCC
Q 013281 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREI-QRTMLELLNQLDGFDSR----GDVKVILATNRIE 341 (446)
Q Consensus 267 g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~-~~~l~~lL~~ld~~~~~----~~v~vI~atn~~~ 341 (446)
|++++.++++|+.|..++||||||||||+++++|.. ..+++ .+.+.+||+.||++... .+|+||+|||+|+
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999854 23443 45557888888876543 5799999999999
Q ss_pred CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 342 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
.|||+|+|+|||++.|.+..|+..+|.+||+..++.+.+..++++..||..|.||.|+||.+||.+|+..|+.+
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=376.30 Aligned_cols=252 Identities=44% Similarity=0.728 Sum_probs=244.3
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
....++|+|+.|.+++++++.|.|+. |++|.-|..+|...|+||+|+||||||||+||+|+|.+.+.||+.+++|+++.
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 35678999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l 343 (446)
.|+|-+.+.+|++|..|+.++||||||||||+++..|.....+++.+..++++++|.+||||.....|+||++||+++.+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVl 301 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVL 301 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccc
Confidence 99999999999999999999999999999999999998777888999999999999999999988899999999999999
Q ss_pred ChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 013281 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 423 (446)
Q Consensus 344 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~ 423 (446)
|+||+||||||+.|.++.||...|.+|++.|+.+.++..++++..+|..|.||+|+|+.+++++|++.|.++++..|++.
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~ 381 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMR 381 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 013281 424 DFKKAKEKVMFKK 436 (446)
Q Consensus 424 d~~~A~~~v~~~~ 436 (446)
||.+|+.+++...
T Consensus 382 ~i~ea~drv~~G~ 394 (596)
T COG0465 382 DIEEAIDRVIAGP 394 (596)
T ss_pred chHHHHHHHhcCc
Confidence 9999999998753
No 21
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.7e-42 Score=357.18 Aligned_cols=348 Identities=36% Similarity=0.565 Sum_probs=277.7
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHhhCCCccccccccc-ccCCeEEEecccCCceeEEecccccccccCCcceEEEec---
Q 013281 85 VTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEEL-IDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN--- 160 (446)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~--- 160 (446)
.+..+.++...+++...+++|+.|..+|.+.|++.+. .++.++.| ...|..|.+.+.+.++...|.+|..|.|+.
T Consensus 18 ~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~~~l~~g~~v~l~e~~~ 96 (512)
T TIGR03689 18 AKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDDETAEV-FTAGRRMRVTVSPNVNAAELVPGQTVRLNEALQ 96 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCCCeEEE-EeCCceEEEEeCCCCCHHHCCCCCEEEECCcce
Confidence 3445556666678888899999999999999999987 66667766 566888999999999999999999988881
Q ss_pred ---------------------chhhhh-------------hcc-----ccc----c------------chhhhhhhcccC
Q 013281 161 ---------------------KVLSVV-------------GLL-----QDE----V------------DPMVSVMKVEKA 185 (446)
Q Consensus 161 ---------------------~~~~~~-------------~~l-----~~~----~------------~~~~~~~~~~~~ 185 (446)
....++ +.+ ... . ...+..+-.+..
T Consensus 97 ~v~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (512)
T TIGR03689 97 VVEARDFETVGEIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPKAEVEDLVLEEV 176 (512)
T ss_pred eeccCCCCCCCceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCHhHHhcceeecC
Confidence 000000 000 000 0 011233445678
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------cEEE
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----------TFLR 255 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~----------~~i~ 255 (446)
|..+|+||+|+++++++|++.|..|+.+|++|..+|+.+|+++|||||||||||++|+++|++++. .|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999754 3677
Q ss_pred EechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCe
Q 013281 256 VVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (446)
Q Consensus 256 v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 331 (446)
+.++++.++|+|+.++.++.+|..++.. .|+||||||+|.++.+|....++ ......+.++|+.++++...+++
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~--d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSS--DVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccc--hHHHHHHHHHHHHhcccccCCce
Confidence 8888999999999999999999988764 69999999999999776432221 12245667999999999888899
Q ss_pred EEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc-CCCC---------CccCHHHHH-----------
Q 013281 332 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR-MTLA---------DDVNLEEFV----------- 390 (446)
Q Consensus 332 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~-~~~~---------~~~~l~~la----------- 390 (446)
+||+|||+++.|||+++|||||+++|+|+.|+.++|.+||+.++.. +++. ...++..++
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~ 414 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATS 414 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999864 3331 111222221
Q ss_pred ------------------HhCCCCcHHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHHHhh
Q 013281 391 ------------------MTKDEFSGADIKAICTEAGLLALRE----RRMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 391 ------------------~~t~g~s~~di~~l~~~A~~~Al~~----~~~~It~~d~~~A~~~v~~~ 435 (446)
..++.+||++|+++|.+|...|+.+ ....|+.+|+..|+......
T Consensus 415 ~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 415 EENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred cccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 1246689999999999999999876 34689999999999887653
No 22
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=351.22 Aligned_cols=246 Identities=51% Similarity=0.815 Sum_probs=230.6
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
..+.++|.|++|++.+++.+++.+..|+.++++|...++.+++++|||||||||||+||+++|++++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l 343 (446)
+|+|++++.++.+|..|+...||||||||+|+++..|.....+.. .+.+.++|.++++.....+|.||+|||+++.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~---~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHH---HHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 999999999999999999999999999999999988854433322 57888999999999888999999999999999
Q ss_pred ChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC--CCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-CCCc
Q 013281 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT--LADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER-RMKV 420 (446)
Q Consensus 344 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~--~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~-~~~I 420 (446)
|++++|||||++.++|++||..+|.+||+.++.... +..++++..++..++||+++||..+|.+|.+.|+++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999554 4578999999999999999999999999999999998 7889
Q ss_pred cHHHHHHHHHHH
Q 013281 421 THTDFKKAKEKV 432 (446)
Q Consensus 421 t~~d~~~A~~~v 432 (446)
+++||..|++.+
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999984
No 23
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-40 Score=341.83 Aligned_cols=228 Identities=37% Similarity=0.653 Sum_probs=217.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
.....|.||+|+.++++.+.+.|++|-++|.+|...+++.+.|||||||||||||+||-++|..++..|+.|.+++++++
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 33478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
|+|.+++.+|++|+.|+...|||||+||+|.++++|.-+.+|-. .+..+++|.+|||...-.+|.|++||.+|+.+|
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLID 817 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCccccC
Confidence 99999999999999999999999999999999999976666654 478899999999988888999999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
|||+||||+|+.++.+.|+..+|.+|++...+...+..++|++.+|..|+||+|+||..+|..|.+.|+.+
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.6e-40 Score=362.23 Aligned_cols=250 Identities=49% Similarity=0.820 Sum_probs=230.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
..|..+|+||+|++.+++.|++.+.+|+.++++|..+|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l 343 (446)
+|+|++++.++.+|..|+...||||||||||.+++.+..... .....+.+.++|.+++++....+++||+|||+++.+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 999999999999999999999999999999999987743222 224567888999999998888899999999999999
Q ss_pred ChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-------
Q 013281 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER------- 416 (446)
Q Consensus 344 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~------- 416 (446)
|++++|||||++.++|++|+.++|.+||+.++.++++..++++..+|..++||||+||.++|++|++.|+++.
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~ 683 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKE 683 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998852
Q ss_pred -----------CCCccHHHHHHHHHHHHhh
Q 013281 417 -----------RMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 417 -----------~~~It~~d~~~A~~~v~~~ 435 (446)
...|+++||..|++++...
T Consensus 684 ~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 684 KLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred hhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 1269999999999876543
No 25
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=8.8e-40 Score=344.43 Aligned_cols=252 Identities=43% Similarity=0.731 Sum_probs=236.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
....|..+|+||+|++.+++++++.+.. +.+++.|..+|..+|+++|||||||||||++|+++|++++.+|+.++++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3456789999999999999999999887 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
...+.|...+.++.+|..|+...|+||||||||.++..+....++.+.+..+++.++|.+++++....+++||+|||+++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 99999999999999999999999999999999999988765545556677889999999999998888999999999999
Q ss_pred CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcc
Q 013281 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 421 (446)
Q Consensus 342 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It 421 (446)
.+|++++|||||++.++|+.|+.++|.+||+.++....+..++++..++..+.|||++||.++|++|...|.+++...|+
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~ 284 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEIT 284 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999888778889999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHh
Q 013281 422 HTDFKKAKEKVMF 434 (446)
Q Consensus 422 ~~d~~~A~~~v~~ 434 (446)
.+||..|++++..
T Consensus 285 ~~~l~~a~~~~~~ 297 (495)
T TIGR01241 285 MNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998875
No 26
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-40 Score=319.59 Aligned_cols=243 Identities=40% Similarity=0.667 Sum_probs=219.1
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG-IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
.++|+||+|++.+++++++.|.+|+++|++|..-+ ..+++|||||||||||||++|+|+|++.+++|+.|..+.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 36899999999999999999999999999996443 56899999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCC--eEEEEEeCCCCCC
Q 013281 266 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD--VKVILATNRIESL 343 (446)
Q Consensus 266 ~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~--v~vI~atn~~~~l 343 (446)
.|+..+.++.+|..|....|+||||||+|.+...|. ++.++.....-.+++...||+.+..+ |+|++|||+|.++
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 999999999999999999999999999999998872 33333344444788888999987765 9999999999999
Q ss_pred ChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh----C---
Q 013281 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE----R--- 416 (446)
Q Consensus 344 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~----~--- 416 (446)
|.|++| |+.+.++++.|+..+|.+||+..+....++.++|+.++|..|+||||+||+++|..|+...+++ .
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999888764 1
Q ss_pred ---------------------CCCccHHHHHHHHHHHHh
Q 013281 417 ---------------------RMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 417 ---------------------~~~It~~d~~~A~~~v~~ 434 (446)
...++++||..|..++..
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~ 361 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSA 361 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhh
Confidence 245788999999886543
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-41 Score=314.86 Aligned_cols=228 Identities=37% Similarity=0.648 Sum_probs=206.2
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
+...|++.|+|+.|++.+++.|+|+|.+|+..|.+|.. .-.|.+|+||||||||||++||+|||.+.+.+|+.|+.++|
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 45789999999999999999999999999999999976 34677899999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCC
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS-RGDVKVILATNRI 340 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-~~~v~vI~atn~~ 340 (446)
+++|.|+++++++.+|+.|+++.|+||||||||.+|+.|.++.+.. ..+.--++|-+|.|... ..+|.|++|||-|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEsea---sRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEA---SRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHH---HHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 9999999999999999999999999999999999998885543332 33455688888888654 3579999999999
Q ss_pred CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 341 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
+.||.+++| ||+..|++|+|+...|..+|+.|+...+.. .+.|+.+|+..|+||||+||.-+++.|.+..+++
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999876644 6778999999999999999999999999998875
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=9.2e-39 Score=341.69 Aligned_cols=251 Identities=42% Similarity=0.699 Sum_probs=235.1
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.....+|+|++|++++++++.+.+.. +.+++.|..+|...++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34567999999999999999998887 89999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l 343 (446)
.+.|.....++.+|..|....||||||||+|.++..+.....+.+.+.+.++.++|.+++++....+++||+|||+++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 99998889999999999999999999999999998776655666778889999999999999888899999999999999
Q ss_pred ChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 013281 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 423 (446)
Q Consensus 344 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~ 423 (446)
|++++|||||++.+.|+.|+.++|.+||+.++....+..++++..+|..+.||+++||.++|++|+..|.+++...|+++
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999988777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 013281 424 DFKKAKEKVMFK 435 (446)
Q Consensus 424 d~~~A~~~v~~~ 435 (446)
||..|+++++..
T Consensus 415 dl~~Ai~rv~~g 426 (638)
T CHL00176 415 EIDTAIDRVIAG 426 (638)
T ss_pred HHHHHHHHHHhh
Confidence 999999998653
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2e-37 Score=322.19 Aligned_cols=242 Identities=29% Similarity=0.463 Sum_probs=209.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
.+..+|+||+|++.+++.+.+..... +..+..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++.+.++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 35678999999999999998865432 344567799999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
|+|+++..++.+|..|+..+||||||||||.++..+.... ......+.+..++..++. ...+|+||+|||+++.+|
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 9999999999999999999999999999999986543221 222345566666666653 346799999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC--CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccH
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA--DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH 422 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~--~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~ 422 (446)
++++|+|||++.++|+.|+.++|.+||+.|+.+.... .+.+++.++..|+||||+||+++|.+|...|..+++ .++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCH
Confidence 9999999999999999999999999999999886533 478899999999999999999999999999988764 5899
Q ss_pred HHHHHHHHHHHh
Q 013281 423 TDFKKAKEKVMF 434 (446)
Q Consensus 423 ~d~~~A~~~v~~ 434 (446)
+||..|+.++..
T Consensus 454 ~dl~~a~~~~~P 465 (489)
T CHL00195 454 DDILLALKQFIP 465 (489)
T ss_pred HHHHHHHHhcCC
Confidence 999999988764
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.8e-36 Score=325.50 Aligned_cols=249 Identities=41% Similarity=0.724 Sum_probs=233.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
....+|.|+.|.+..+.++.+.+.. +..++.|..++...++|++|+||||||||++|+++|++++.+|+.++++++...
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 3457899999999999999999987 678888888899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
+++.....++.+|..+....||||||||+|.++..+.....+++.+..+++.++|.+++++....+++||+|||+++.+|
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD 304 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcC
Confidence 99999999999999999999999999999999988866555666777789999999999998888999999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHH
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 424 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d 424 (446)
++++|||||++.++|+.|+.++|.+||+.|+.+.++..++++..++..+.||||+||.++|++|+..|.++++..|++.|
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d 384 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 384 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 013281 425 FKKAKEKVMF 434 (446)
Q Consensus 425 ~~~A~~~v~~ 434 (446)
|..|+.++..
T Consensus 385 ~~~a~~~v~~ 394 (644)
T PRK10733 385 FEKAKDKIMM 394 (644)
T ss_pred HHHHHHHHhc
Confidence 9999998865
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=8.1e-36 Score=334.69 Aligned_cols=220 Identities=20% Similarity=0.318 Sum_probs=188.2
Q ss_pred cCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh----------cC-----------
Q 013281 209 LPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY----------LG----------- 267 (446)
Q Consensus 209 ~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~----------~g----------- 267 (446)
.|......+.++|+.+|+||||+||||||||+||+|+|.++++||+.+++++++..+ +|
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 344556677899999999999999999999999999999999999999999998754 11
Q ss_pred --------------------Cch--HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC
Q 013281 268 --------------------DGP--KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF 325 (446)
Q Consensus 268 --------------------~~~--~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 325 (446)
.+. ..++.+|+.|+..+||||||||||+|+.+. . ...++.+|+++|++.
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s--~~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------S--NYLSLGLLVNSLSRD 1764 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------c--ceehHHHHHHHhccc
Confidence 122 237889999999999999999999997541 1 112477888888876
Q ss_pred C---CCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHH--HccCCCCC-ccCHHHHHHhCCCCcHH
Q 013281 326 D---SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH--TSRMTLAD-DVNLEEFVMTKDEFSGA 399 (446)
Q Consensus 326 ~---~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~--~~~~~~~~-~~~l~~la~~t~g~s~~ 399 (446)
. ...+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++..+ +..+.+.. .++++.+|..|.|||||
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 3 456899999999999999999999999999999999999999998864 44555553 36899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhc
Q 013281 400 DIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 400 di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~ 437 (446)
||.++|++|++.|+++++..|++++|..|+.+++....
T Consensus 1845 DLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~ 1882 (2281)
T CHL00206 1845 DLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLR 1882 (2281)
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999876543
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-35 Score=303.86 Aligned_cols=239 Identities=45% Similarity=0.718 Sum_probs=220.1
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
+..+ .+++|+..+++.+++.+++|+.++..|..+|+++|+++|+|||||||||.++++||++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4566 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhhcC-CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 266 LGDGPKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 266 ~g~~~~~v~~lf~~a~~~~-p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
.|++++.++..|+.|..++ |++|||||+|.+++++..... -..+...+++..+++....++++||++||+++.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998854433 23455567777777777788999999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHH
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 424 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d 424 (446)
++++| |||++.+++..|+..+|.+|++.++..+++..++++..+|..+.||+|+|+.++|.+|.+.+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999998899999999999999999999999999999988 7788
Q ss_pred HHHHHHHHHhh
Q 013281 425 FKKAKEKVMFK 435 (446)
Q Consensus 425 ~~~A~~~v~~~ 435 (446)
|..|...+...
T Consensus 409 ~~~A~~~i~ps 419 (693)
T KOG0730|consen 409 FQEALMGIRPS 419 (693)
T ss_pred HHHHHhcCCch
Confidence 88887765443
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=320.10 Aligned_cols=251 Identities=40% Similarity=0.681 Sum_probs=219.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEec
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-----ATFLRVVG 258 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~-----~~~i~v~~ 258 (446)
....++|++|+|++.+|++|+|.|..||.+|++|..+++.+|+|||||||||||||+.|+++|..+. ..|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3456899999999999999999999999999999999999999999999999999999999999875 36777788
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
++..++|+|+.++.++.+|+.|+..+|+|||+||||-|++.|.+.+..-+. .....||..|+|++.++.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~---SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHA---SIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhh---hHHHHHHHhccCCCCCCceEEEcccC
Confidence 999999999999999999999999999999999999999887443322222 34456666778889999999999999
Q ss_pred CCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-
Q 013281 339 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER- 416 (446)
Q Consensus 339 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~- 416 (446)
+++.+||+++|||||++.++|++|+.+.|.+|+.+|..+..-. ...-+..||..+.||.|+||+++|++|++.|+++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999999887632 22346799999999999999999999999999874
Q ss_pred ---------------CCCccHHHHHHHHHHHHhhhc
Q 013281 417 ---------------RMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 417 ---------------~~~It~~d~~~A~~~v~~~~~ 437 (446)
...|...||..|..++...-.
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCC
Confidence 234778888888887765433
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-35 Score=295.85 Aligned_cols=251 Identities=37% Similarity=0.603 Sum_probs=218.7
Q ss_pred ccCCCCCccc--ccCcHHHHHHH-HHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEec
Q 013281 183 EKAPLESYAD--IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-TFLRVVG 258 (446)
Q Consensus 183 ~~~~~~~~~d--i~Gl~~~i~~l-~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~-~~i~v~~ 258 (446)
...|.-.|.+ |+|++.....| +.+...-+-.|++.+++|++.-+|+|||||||||||++||.|..-+++ .--.|++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3456667776 79999988876 556666688899999999999999999999999999999999998876 5566899
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhhc--------CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Q 013281 259 SELIQKYLGDGPKLVRELFRVADDL--------SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~~~--------~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 330 (446)
++++++|+|+++..+|.+|..|.+. .-.||++||||++|.+|.+...+ ..-.....++||..+||.+.-.+
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhc
Confidence 9999999999999999999998643 23499999999999988654332 22334678899999999999999
Q ss_pred eEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC----CCCccCHHHHHHhCCCCcHHHHHHHHH
Q 013281 331 VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LADDVNLEEFVMTKDEFSGADIKAICT 406 (446)
Q Consensus 331 v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~----~~~~~~l~~la~~t~g~s~~di~~l~~ 406 (446)
+.||+.||+.+.+|.||+|||||...+++.+||+..|.+|+++|+.+|. +..++|+.+||..|..||||+|..+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999998864 568999999999999999999999999
Q ss_pred HHHHHHHHhC---------------CCCccHHHHHHHHHHHHh
Q 013281 407 EAGLLALRER---------------RMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 407 ~A~~~Al~~~---------------~~~It~~d~~~A~~~v~~ 434 (446)
.|...|+.+. .-.|+++||..|++.+..
T Consensus 450 sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 9999998773 246999999999996643
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.7e-33 Score=309.56 Aligned_cols=247 Identities=49% Similarity=0.826 Sum_probs=221.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
.+..+|+||+|++.+++.|++++..|+.+|++|..+|+.+++++|||||||||||++|+++|++++.+|+.++++++..+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
|.|+....++.+|..+....|+||||||+|.++.++.......+. +.+.+|+..++++...+.++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~---~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEK---RVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHH---HHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999998776443222222 34455666667766678899999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER-------- 416 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~-------- 416 (446)
++++++|||++.++++.|+.++|.+||+.+...+.+..++++..++..++||+++|+.++|.+|++.++++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999988888999999999999999999999999999988752
Q ss_pred -----------CCCccHHHHHHHHHHHHh
Q 013281 417 -----------RMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 417 -----------~~~It~~d~~~A~~~v~~ 434 (446)
...++.+||..|+..+..
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccc
Confidence 135788999999886653
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=284.69 Aligned_cols=248 Identities=40% Similarity=0.613 Sum_probs=215.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
....+.+.|+|+.|++.+++.+.+++.+|+..|++|..+. .+.+++||.||||||||+|++|||.++++.|+.++++.|
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 4466779999999999999999999999999999998764 566799999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC--CCCeEEEEEeCC
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS--RGDVKVILATNR 339 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~vI~atn~ 339 (446)
.++|+|++++.++.+|..|+..+|+|+||||+|.++.+|.+.... ..-+...++|.+.++... ..+|+||+|||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e---~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHE---SSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccc---cchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 999999999999999999999999999999999999888433222 223556777777776544 347999999999
Q ss_pred CCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC-CCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--
Q 013281 340 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER-- 416 (446)
Q Consensus 340 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~-~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~-- 416 (446)
|+.+|.+++| ||...+++|+|+.+.|..+|+..+.+. ....+.++..|+..|+||+++||.++|.+|++--++..
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 999999999999999999999998776 33466789999999999999999999999987665543
Q ss_pred -----------CCCccHHHHHHHHHHHHhh
Q 013281 417 -----------RMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 417 -----------~~~It~~d~~~A~~~v~~~ 435 (446)
...|+..||..|++.+...
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 2457788999998877554
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=3.8e-31 Score=260.23 Aligned_cols=185 Identities=22% Similarity=0.248 Sum_probs=152.8
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhc-----CCeEEEEcCcc
Q 013281 220 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDL-----SPSIVFIDEID 294 (446)
Q Consensus 220 ~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~-----~p~IL~IDEid 294 (446)
.++++|.+++||||||||||++|+++|++++++|+.++++++.++|+|++++.++++|..|... +||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 4789999999999999999999999999999999999999999999999999999999999754 69999999999
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHHhcCC------------CCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCC
Q 013281 295 AVGTKRYDAHSGGEREIQRTMLELLNQLDGF------------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 295 ~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------------~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P 362 (446)
++++.+.+.+ .....+....+||+.+|+. ....+|.||+|||+++.|||+|+|||||++.+ ..|
T Consensus 223 A~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lP 298 (413)
T PLN00020 223 AGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAP 298 (413)
T ss_pred hcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCC
Confidence 9998875322 2222233335677666542 33567999999999999999999999999864 589
Q ss_pred CHHHHHHHHHHHHccCCCCCccCHHHHHHhCCC----CcHHHHHHHHHHHH
Q 013281 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE----FSGADIKAICTEAG 409 (446)
Q Consensus 363 ~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g----~s~~di~~l~~~A~ 409 (446)
+.++|.+||+.++++..+. ..++..|+..+.| |.|+--..+..++.
T Consensus 299 d~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v 348 (413)
T PLN00020 299 TREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEV 348 (413)
T ss_pred CHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHH
Confidence 9999999999999988775 5788889988876 55654444444443
No 38
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.5e-24 Score=223.43 Aligned_cols=281 Identities=23% Similarity=0.310 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEecchhhhhhccccccchh
Q 013281 97 KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPM 176 (446)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~ 176 (446)
..++.+++++.+.-+......+.+.+.+...+-.++++.+...+++.|+ ..+.||....-+
T Consensus 339 ~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwl--t~LPWgk~S~En----------------- 399 (906)
T KOG2004|consen 339 LVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWL--TSLPWGKSSTEN----------------- 399 (906)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHH--HhCCCCCCChhh-----------------
Confidence 3455677777755444555677777777777777778888888888887 445555332111
Q ss_pred hhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 177 VSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 177 ~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
+.+..+...--+|..|+++++++|.|+|..-... |....+.++|+||||+|||+++++||+.+++.|+++
T Consensus 400 ---~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf 469 (906)
T KOG2004|consen 400 ---LDLARAKEILDEDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRF 469 (906)
T ss_pred ---hhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE
Confidence 1112222233456789999999999999874333 334566799999999999999999999999999999
Q ss_pred echhhhh---------hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHH------
Q 013281 257 VGSELIQ---------KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ------ 321 (446)
Q Consensus 257 ~~s~l~~---------~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~------ 321 (446)
+...+.. .|+|..+..+-+.+.....++| +++|||||.++. +...+-..+|+++|.-
T Consensus 470 SvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-------g~qGDPasALLElLDPEQNanF 541 (906)
T KOG2004|consen 470 SVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-------GHQGDPASALLELLDPEQNANF 541 (906)
T ss_pred eccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-------CCCCChHHHHHHhcChhhccch
Confidence 8765543 5999999999999999988887 899999999972 1222345778888752
Q ss_pred hcCC----CCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCc
Q 013281 322 LDGF----DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFS 397 (446)
Q Consensus 322 ld~~----~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s 397 (446)
+|.+ -.-..|.||||+|..+.++++|+. |+. .|+++-+..+++..|.+.|+-...+...---.+-+...+...
T Consensus 542 lDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al 618 (906)
T KOG2004|consen 542 LDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDAL 618 (906)
T ss_pred hhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHH
Confidence 1211 123579999999999999999999 995 999999999999999998875422111000001111111112
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 013281 398 GADIKAICTEAGLLALRERR 417 (446)
Q Consensus 398 ~~di~~l~~~A~~~Al~~~~ 417 (446)
-+-|+..|++|+...+.++-
T Consensus 619 ~~lI~~YcrEaGVRnLqk~i 638 (906)
T KOG2004|consen 619 LALIERYCREAGVRNLQKQI 638 (906)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 23466667777776666543
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=1.6e-22 Score=198.43 Aligned_cols=212 Identities=21% Similarity=0.315 Sum_probs=158.8
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCc---eEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEechh
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPK---GVILYGEPGTGKTLLAKAVANSTS-------ATFLRVVGSE 260 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~---~vLL~GppGtGKT~Laraia~~~~-------~~~i~v~~s~ 260 (446)
.+|+|++.++++|++.+.. +..+.++...|+.++. +++|+||||||||++|+++|+.+. .+|+.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999877 5566777888876543 599999999999999999998752 3699999999
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+.+.|+|..+..+..+|..+. ++||||||+|.++..+. ......+.+..|+.+++. ...+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN-----QRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 999999988887888888764 48999999999964321 122345566666666642 24678888988653
Q ss_pred C-----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCc-cCHHHHHHh------CCCC-cHHHHHHHHHH
Q 013281 341 E-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVMT------KDEF-SGADIKAICTE 407 (446)
Q Consensus 341 ~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-~~l~~la~~------t~g~-s~~di~~l~~~ 407 (446)
. .++|++.+ ||+..|+|++|+.+++.+|+..++......-+ .....+... .+.| +++++++++..
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 35799988 99999999999999999999999876543311 122222221 1223 48999999988
Q ss_pred HHHHHHHh
Q 013281 408 AGLLALRE 415 (446)
Q Consensus 408 A~~~Al~~ 415 (446)
|......+
T Consensus 250 ~~~~~~~r 257 (287)
T CHL00181 250 ARMRQANR 257 (287)
T ss_pred HHHHHHHH
Confidence 87665443
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=2.3e-22 Score=197.33 Aligned_cols=211 Identities=21% Similarity=0.294 Sum_probs=161.1
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCC---CceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEechhh
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKP---PKGVILYGEPGTGKTLLAKAVANSTS-------ATFLRVVGSEL 261 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~Laraia~~~~-------~~~i~v~~s~l 261 (446)
+++|+++++++|.+.+.. +..+..+.+.|+.+ ..+++|+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999999888 67788888888874 34899999999999999999988663 37999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI- 340 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~- 340 (446)
...+.|.....+..+|..+.. +||||||++.+...+. ......+.+..|+++++. ...+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN-----QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcHH
Confidence 999999988888888887744 8999999999864321 122344556666666642 24678899988653
Q ss_pred -C---CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCc-cCHHHHHHh-------CCCCcHHHHHHHHHHH
Q 013281 341 -E---SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVMT-------KDEFSGADIKAICTEA 408 (446)
Q Consensus 341 -~---~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-~~l~~la~~-------t~g~s~~di~~l~~~A 408 (446)
+ .++|++.+ ||...|+||.++.+++..|++.++.+....-+ ..+..++.+ ..-.+++++++++..|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 2 35899998 99999999999999999999999987643322 223334333 2224689999999888
Q ss_pred HHHHHHh
Q 013281 409 GLLALRE 415 (446)
Q Consensus 409 ~~~Al~~ 415 (446)
......+
T Consensus 250 ~~~~~~r 256 (284)
T TIGR02880 250 RLRQANR 256 (284)
T ss_pred HHHHHHH
Confidence 7665443
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=1.3e-21 Score=190.00 Aligned_cols=213 Identities=22% Similarity=0.267 Sum_probs=153.9
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCC---ceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEec
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP---KGVILYGEPGTGKTLLAKAVANST-------SATFLRVVG 258 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~---~~vLL~GppGtGKT~Laraia~~~-------~~~~i~v~~ 258 (446)
.+++++|++.++++|++.+..+... ......|..++ .+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3567899999999999988775333 33334455433 469999999999999999999864 247889999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
+++.+.|+|+....+..+|..+. ++||||||+|.|.... ........+..++..++.. ..++++|++++
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCC
Confidence 99999999999998999998875 4899999999995311 1111223344455555432 45677777765
Q ss_pred CCC-----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCHHHHHHh---------CCCCcHHHHHH
Q 013281 339 RIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMT---------KDEFSGADIKA 403 (446)
Q Consensus 339 ~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l~~la~~---------t~g~s~~di~~ 403 (446)
..+ .++|++.+ ||...++||.++.+++.+|++.++......- +..+..++.. ....+++.+++
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 432 37889988 9998999999999999999999987654332 2223343221 12247889999
Q ss_pred HHHHHHHHHHHh
Q 013281 404 ICTEAGLLALRE 415 (446)
Q Consensus 404 l~~~A~~~Al~~ 415 (446)
++..|......+
T Consensus 230 ~~e~a~~~~~~r 241 (261)
T TIGR02881 230 IIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999887766544
No 42
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-22 Score=211.57 Aligned_cols=294 Identities=21% Similarity=0.272 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEecchhhhhhccccccchhh
Q 013281 98 AEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMV 177 (446)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~ 177 (446)
.++.+++++...-+......++..+++.......|.....+.+++.|+ -.+.|+..-....+
T Consensus 252 ~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwl--l~lPW~~~sk~~~D---------------- 313 (782)
T COG0466 252 VEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWL--LDLPWGKRSKDKLD---------------- 313 (782)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH--HhCCCccccchhhh----------------
Confidence 344455555444444444455555555555555555666666666665 22334322111111
Q ss_pred hhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 178 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 178 ~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
+..+..+--.|..|+++++++|.|++..-..... ....-++|+||||+|||+|+++||+.+++.|++++
T Consensus 314 ----l~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s 382 (782)
T COG0466 314 ----LKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS 382 (782)
T ss_pred ----HHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe
Confidence 1111122234568999999999999987322211 12345889999999999999999999999999998
Q ss_pred chhhhh---------hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC--C-
Q 013281 258 GSELIQ---------KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--F- 325 (446)
Q Consensus 258 ~s~l~~---------~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~- 325 (446)
...+.. .|+|..+..+-+-...|...+| +++|||||.++..- ..+-..+|++.|.-=.+ |
T Consensus 383 LGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-------rGDPaSALLEVLDPEQN~~F~ 454 (782)
T COG0466 383 LGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-------RGDPASALLEVLDPEQNNTFS 454 (782)
T ss_pred cCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-------CCChHHHHHhhcCHhhcCchh
Confidence 765432 5999999999999999988887 89999999996432 22335677777752111 1
Q ss_pred -------CCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc-----CCCCC-cc-----CHH
Q 013281 326 -------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR-----MTLAD-DV-----NLE 387 (446)
Q Consensus 326 -------~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~-----~~~~~-~~-----~l~ 387 (446)
..-++|.||+|+|..+.++.+|+. |+. +|+++-++.++..+|.+.|+-. ..+.. ++ .+.
T Consensus 455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~ 531 (782)
T COG0466 455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIK 531 (782)
T ss_pred hccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHH
Confidence 123579999999999999999999 995 9999999999999999988642 33321 11 223
Q ss_pred HHHH-hCC--CCc--HHHHHHHHHHHHHHHHHhCCC---CccHHHHHHHHHH
Q 013281 388 EFVM-TKD--EFS--GADIKAICTEAGLLALRERRM---KVTHTDFKKAKEK 431 (446)
Q Consensus 388 ~la~-~t~--g~s--~~di~~l~~~A~~~Al~~~~~---~It~~d~~~A~~~ 431 (446)
.+.. +|. |.- -+.|..+|+.++..-+..... .|+..++.+=+-.
T Consensus 532 ~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 532 DIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 3322 221 211 256777787777665554432 4666666655443
No 43
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-21 Score=195.32 Aligned_cols=208 Identities=25% Similarity=0.318 Sum_probs=164.2
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcC
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g 267 (446)
.+|+.|+=-...+++|.+-+..++...+.|++.|..-.+|.|||||||||||+++.|+|+.++..++-+..++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 688889888899999999999999999999999999999999999999999999999999999988887766542
Q ss_pred CchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCC--Cc--HHHHHHHHHHHHHhcCCCCCC--CeEEEEEeCCCC
Q 013281 268 DGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG--GE--REIQRTMLELLNQLDGFDSRG--DVKVILATNRIE 341 (446)
Q Consensus 268 ~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~--~~--~~~~~~l~~lL~~ld~~~~~~--~v~vI~atn~~~ 341 (446)
.... ++.++..+.. .+||+|.+||+-+.-+...... .. ....-+|..||+.+||+.+.. .-+||+|||.++
T Consensus 273 ~n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2233 5666655443 3899999999986533222111 11 122367889999999998875 688999999999
Q ss_pred CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCC--CcHHHHHHHH
Q 013281 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE--FSGADIKAIC 405 (446)
Q Consensus 342 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g--~s~~di~~l~ 405 (446)
.|||||+||||+|.+|++..-+..+-+.++..++.--. +..-+.+|....++ .|+||+...+
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 99999999999999999999999999999999886432 12234445444333 5899987654
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=2e-21 Score=167.69 Aligned_cols=130 Identities=45% Similarity=0.697 Sum_probs=109.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcC-CeEEEEcCcccccccccCCCCC
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSG 306 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~-p~IL~IDEid~l~~~r~~~~~~ 306 (446)
|||+||||||||++|+++|+.++.+|+.++++++.+.+.+...+.+..+|..+.... |+||||||+|.++.... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999998888999999999999998887 99999999999987762 22
Q ss_pred CcHHHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCCChhhcCCCceeeEEEcCC
Q 013281 307 GEREIQRTMLELLNQLDGFDSR-GDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361 (446)
Q Consensus 307 ~~~~~~~~l~~lL~~ld~~~~~-~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 361 (446)
........+..++..++..... .++.||++||.++.+++++++ +||+..+++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3334445555566666655443 569999999999999999997 79999999874
No 45
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.86 E-value=2.4e-21 Score=214.06 Aligned_cols=222 Identities=24% Similarity=0.333 Sum_probs=152.3
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh--------
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI-------- 262 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~-------- 262 (446)
.+++|++.+++.|.+++..+... +...+.+++|+||||||||++|+++|+.++.+|++++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35899999999999988754322 112234799999999999999999999999999999765432
Q ss_pred -hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHh--cCCC--------CCCCe
Q 013281 263 -QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL--DGFD--------SRGDV 331 (446)
Q Consensus 263 -~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~l--d~~~--------~~~~v 331 (446)
..|+|..+..+.+.|..+....| ||||||||.+.+.. .......|+++|... ..|. ..+++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 25778888888888888776665 89999999997432 112345666666421 1111 12579
Q ss_pred EEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHc-----cCCCC------CccCHHHHHHh-CCCCcHH
Q 013281 332 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS-----RMTLA------DDVNLEEFVMT-KDEFSGA 399 (446)
Q Consensus 332 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~-----~~~~~------~~~~l~~la~~-t~g~s~~ 399 (446)
+||+|||..+.++++|++ ||. .|+|+.|+.+++..|++.++. ...+. .+..+..|+.. +..+..+
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R 541 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVR 541 (775)
T ss_pred EEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCCh
Confidence 999999999999999998 995 899999999999999988762 12221 12234455543 3333344
Q ss_pred H----HHHHHHHHHHHHHHhCC--------CCccHHHHHHHHH
Q 013281 400 D----IKAICTEAGLLALRERR--------MKVTHTDFKKAKE 430 (446)
Q Consensus 400 d----i~~l~~~A~~~Al~~~~--------~~It~~d~~~A~~ 430 (446)
+ |..+|+.++...+..+. -.|+.+++..-+.
T Consensus 542 ~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 542 NLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 4 44566666544333221 3677777665443
No 46
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3e-20 Score=194.57 Aligned_cols=239 Identities=25% Similarity=0.376 Sum_probs=193.1
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCc
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~ 269 (446)
+-...+.+..+.++..++.. -..|.. .++.....+||+|+||||||++++++|++++.+++.++|.++.....+..
T Consensus 400 ~~~~~~~~~~~~~l~~vl~p-~~~~s~---~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~ 475 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVAVLSP-QKQPSG---ALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT 475 (953)
T ss_pred cCCCccchHHHHHHHHHhCc-ccCcch---hccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh
Confidence 33445666666656555544 233221 12334456999999999999999999999999999999999999988889
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCChhhc
Q 013281 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRIESLDPALL 348 (446)
Q Consensus 270 ~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~-~~~~v~vI~atn~~~~ld~al~ 348 (446)
+..+..+|..|+.+.|+|||+-++|.++..+ ..+.+..++..+..++. .+.+. +...++||++|+..+.+++.++
T Consensus 476 etkl~~~f~~a~~~~pavifl~~~dvl~id~---dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~ 551 (953)
T KOG0736|consen 476 ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ---DGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQ 551 (953)
T ss_pred HHHHHHHHHHHhhcCceEEEEeccceeeecC---CCchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHH
Confidence 9999999999999999999999999998443 23455566666666665 33333 5678999999999999999998
Q ss_pred CCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh---C---------
Q 013281 349 RPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE---R--------- 416 (446)
Q Consensus 349 r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~---~--------- 416 (446)
+ -|...|.++.|+.++|.+||++++....+..++.+..++.++.||+.+|+.+++..+-..+..+ .
T Consensus 552 ~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~ 629 (953)
T KOG0736|consen 552 S--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEE 629 (953)
T ss_pred H--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhc
Confidence 8 7777999999999999999999999999999999999999999999999999987774444332 1
Q ss_pred --------CCCccHHHHHHHHHHHHhhhcc
Q 013281 417 --------RMKVTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 417 --------~~~It~~d~~~A~~~v~~~~~~ 438 (446)
...++++||.+|+.++......
T Consensus 630 ~~~~~~~~~~~l~~edf~kals~~~~~fs~ 659 (953)
T KOG0736|consen 630 DEGELCAAGFLLTEEDFDKALSRLQKEFSD 659 (953)
T ss_pred cccccccccceecHHHHHHHHHHHHHhhhh
Confidence 2579999999999988776655
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.2e-21 Score=185.85 Aligned_cols=245 Identities=22% Similarity=0.252 Sum_probs=185.2
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhC-CCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEec
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIG-IKPPKGVILYGEPGTGKTLLAKAVANSTS---------ATFLRVVG 258 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~Laraia~~~~---------~~~i~v~~ 258 (446)
-|+.++--...++++..++...+...+.-.... +...+-+||+||||||||+|++|+|+.+. ...+++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 355666667788888887776554333221111 22345599999999999999999999875 36789999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhhcC---C--eEEEEcCcccccccccCCCC-CCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 259 SELIQKYLGDGPKLVRELFRVADDLS---P--SIVFIDEIDAVGTKRYDAHS-GGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~~~~---p--~IL~IDEid~l~~~r~~~~~-~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
..++++|.+++.+.+..+|....+.. . -.|+|||+++|+..|.+..+ ....+..+..+.+|.++|.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 99999999999999999998876532 1 26779999999988854443 345567899999999999999999999
Q ss_pred EEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCC-----C-------------CccCHHHHHHh-C
Q 013281 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL-----A-------------DDVNLEEFVMT-K 393 (446)
Q Consensus 333 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~-----~-------------~~~~l~~la~~-t 393 (446)
+++|+|-.+.+|-|+.. |-|.+.++.+|+...+++|++..+..+-- . .+.....++.. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999998 99999999999999999999987654210 0 01112233333 4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhc
Q 013281 394 DEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 394 ~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~ 437 (446)
.|+||+-|+.+=..|... .-...+|+.++|..|+-..+.+..
T Consensus 378 ~gLSGRtlrkLP~Laha~--y~~~~~v~~~~fl~al~ea~~k~~ 419 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAHAE--YFRTFTVDLSNFLLALLEAAKKLL 419 (423)
T ss_pred cCCccchHhhhhHHHHHh--ccCCCccChHHHHHHHHHHHHHHh
Confidence 899999999875544322 223468999999999887776543
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=7.8e-20 Score=169.88 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=135.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.-.+.+|+|++|++..+..++-++...... -.+..++|||||||+||||||+.||++++.+|..++++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 346789999999999999988777653111 123457999999999999999999999999999988865321
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc-----CCCC--------CCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-----GFDS--------RGD 330 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld-----~~~~--------~~~ 330 (446)
...+..++.... ...||||||||.+ +...|..|+..++.-. |-.. -.+
T Consensus 89 ------~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ------AGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ------CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ------HHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 223334443332 3479999999999 7788898888887421 1111 125
Q ss_pred eEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCHHHHHHhCCCCcHHHHHHHHHHHH
Q 013281 331 VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGADIKAICTEAG 409 (446)
Q Consensus 331 v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l~~la~~t~g~s~~di~~l~~~A~ 409 (446)
+.+|+||.+...+.+.|+. ||.....+..++.++...|++.....+++.- +....+||.++.| +++-..++++++.
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 8899999999999999988 9998889999999999999998888777653 3346789999887 8888778877653
No 49
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.2e-20 Score=181.63 Aligned_cols=235 Identities=22% Similarity=0.331 Sum_probs=161.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
..+...|.+++-.......|...... -.+. ...-.+-++|+||||||||||++|+.+|...|..+-.+.+.++.-
T Consensus 348 ~~gk~pl~~ViL~psLe~Rie~lA~a-TaNT----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP 422 (630)
T KOG0742|consen 348 SRGKDPLEGVILHPSLEKRIEDLAIA-TANT----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP 422 (630)
T ss_pred hcCCCCcCCeecCHHHHHHHHHHHHH-hccc----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc
Confidence 34445688887766666666654332 1110 111234467999999999999999999999999888877766532
Q ss_pred hhcCCchHHHHHHHHHHhhcCCe-EEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPS-IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~-IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
-. .+.-..+..+|..++....+ +|||||+|+++..|... .-+......|+.||-.-. +...+++++++||+|..
T Consensus 423 lG-~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 423 LG-AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 497 (630)
T ss_pred cc-hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccc
Confidence 11 12235678899999876544 89999999998776432 223344556666664322 23568999999999999
Q ss_pred CChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC----C-----------------------ccCHHHHHHhCCC
Q 013281 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA----D-----------------------DVNLEEFVMTKDE 395 (446)
Q Consensus 343 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~----~-----------------------~~~l~~la~~t~g 395 (446)
+|.++-. ||+..++||+|..++|..+|..|+.+.-+. . +.-+.+.|..|.|
T Consensus 498 lDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeG 575 (630)
T KOG0742|consen 498 LDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEG 575 (630)
T ss_pred hhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccC
Confidence 9999987 999999999999999999999887753211 0 0014577899999
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013281 396 FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 396 ~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
|||++|..|+.-....+.-+..-.++..-|...+.
T Consensus 576 fSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 576 FSGREIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred CcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 99999999876433333333333444444544444
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.3e-19 Score=188.32 Aligned_cols=232 Identities=22% Similarity=0.265 Sum_probs=179.1
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEechhhhhhhc
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGSELIQKYL 266 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~----~~~i~v~~s~l~~~~~ 266 (446)
.|++-..+.+++..+..-.| +-.+.++||+||+|||||.||++++.+.. +++..++|+.+....+
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 44555666666655533333 22355799999999999999999999874 5788899999988777
Q ss_pred CCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc-CCCC-CCCeEEEEEeCCCCCCC
Q 013281 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-GFDS-RGDVKVILATNRIESLD 344 (446)
Q Consensus 267 g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld-~~~~-~~~v~vI~atn~~~~ld 344 (446)
....+.+..+|..+.+++|+||++|++|.|++..... .+........+..+|+++. .+.. ...+.||++.+....++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e-~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNE-NGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCccc-CCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 7777888999999999999999999999998733222 2223334445555554432 2222 34478999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh----CCCC
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE----RRMK 419 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~----~~~~ 419 (446)
|.|.+|++|+.++.++.|+..+|.+||...+.+.... ...|++.++..|+||...|+.-++.+|...|+.. ....
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kl 635 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKL 635 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999988765522 2234555999999999999999999999999843 2347
Q ss_pred ccHHHHHHHHHHHHh
Q 013281 420 VTHTDFKKAKEKVMF 434 (446)
Q Consensus 420 It~~d~~~A~~~v~~ 434 (446)
+|.++|.++++..+.
T Consensus 636 ltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 636 LTKELFEKSLKDFVP 650 (952)
T ss_pred chHHHHHHHHHhcCh
Confidence 899999999987654
No 51
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.83 E-value=4.9e-19 Score=177.57 Aligned_cols=220 Identities=18% Similarity=0.200 Sum_probs=165.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
.+..+.+|++++|.+..++.+..++..... .-.++.+++||||||||||++|+++|++++..+..++++.+.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 445667999999999999999988865211 113466899999999999999999999999988777665432
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc-------CCC------CCC
Q 013281 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-------GFD------SRG 329 (446)
Q Consensus 263 ~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld-------~~~------~~~ 329 (446)
....+..++... ..++||||||||.+. ...+..+..+++... +.. ...
T Consensus 89 ------~~~~l~~~l~~l--~~~~vl~IDEi~~l~-----------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 ------KPGDLAAILTNL--EEGDVLFIDEIHRLS-----------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ------ChHHHHHHHHhc--ccCCEEEEecHhhcc-----------hHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 122334444432 246899999999993 233444555554321 000 113
Q ss_pred CeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHH
Q 013281 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEA 408 (446)
Q Consensus 330 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A 408 (446)
++.+|++||+...+++++++ ||...+.|+.|+.+++.+|++..+....+. ++..+..|+..+.| +++.+..++..+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHH
Confidence 47889999999999999988 998899999999999999999888766554 33347788888887 678899999998
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHH
Q 013281 409 GLLALRERRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 409 ~~~Al~~~~~~It~~d~~~A~~~v 432 (446)
..+|..++...|+.+++..++..+
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Confidence 888887766789999999988654
No 52
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.83 E-value=1.8e-19 Score=191.12 Aligned_cols=248 Identities=23% Similarity=0.275 Sum_probs=173.5
Q ss_pred CcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEE
Q 013281 152 PGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILY 231 (446)
Q Consensus 152 ~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~ 231 (446)
.+..+.+.+.+....+.+..-.+-..+.-..+++.+.+|++++|.+..++.++.++.. ..+.++||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~ 92 (531)
T TIGR02902 26 QTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIY 92 (531)
T ss_pred cCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEE
Confidence 3444555555444444433322211122355678889999999999999999977543 235689999
Q ss_pred cCCCCcHHHHHHHHHHHh----------CCcEEEEechhh-------hhhhcCCch----------------HHHHHHHH
Q 013281 232 GEPGTGKTLLAKAVANST----------SATFLRVVGSEL-------IQKYLGDGP----------------KLVRELFR 278 (446)
Q Consensus 232 GppGtGKT~Laraia~~~----------~~~~i~v~~s~l-------~~~~~g~~~----------------~~v~~lf~ 278 (446)
||||||||++|+++++.+ +.+|+.++|+.. ....++... ......+.
T Consensus 93 Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~ 172 (531)
T TIGR02902 93 GPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT 172 (531)
T ss_pred CCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh
Confidence 999999999999998742 368999998642 111111100 00011222
Q ss_pred HHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC-----------------------CCCCCeEEEE
Q 013281 279 VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-----------------------DSRGDVKVIL 335 (446)
Q Consensus 279 ~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~-----------------------~~~~~v~vI~ 335 (446)
. ...++||||||+.| +...|..|+.+|+.-..+ ....++++|+
T Consensus 173 ~---a~gG~L~IdEI~~L-----------~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ 238 (531)
T TIGR02902 173 R---AHGGVLFIDEIGEL-----------HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIG 238 (531)
T ss_pred c---cCCcEEEEechhhC-----------CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEE
Confidence 2 23489999999999 677888888888652100 0123567776
Q ss_pred Ee-CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 013281 336 AT-NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 336 at-n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al 413 (446)
+| +.++.++|++++ |+. .+.|+.++.++...|++..+++..+. ++..++.|+.++. +++++.++|+.|+..|.
T Consensus 239 ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 239 ATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIAL 313 (531)
T ss_pred EecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHh
Confidence 65 568999999998 885 78899999999999999998876654 3334566666554 78999999999999998
Q ss_pred HhCCCCccHHHHHHHHHH
Q 013281 414 RERRMKVTHTDFKKAKEK 431 (446)
Q Consensus 414 ~~~~~~It~~d~~~A~~~ 431 (446)
.+++..|+.+|+..++..
T Consensus 314 ~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 314 GEGRKRILAEDIEWVAEN 331 (531)
T ss_pred hCCCcEEcHHHHHHHhCC
Confidence 888889999999999864
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.82 E-value=7e-19 Score=174.50 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=157.3
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCC
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGD 268 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~ 268 (446)
+|++++|++.++++|..++...... -..+.+++||||||||||+||+++|++++..+..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 6899999999999999988652211 133567999999999999999999999998877665543221
Q ss_pred chHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC-------C------CCCCCeEEEE
Q 013281 269 GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG-------F------DSRGDVKVIL 335 (446)
Q Consensus 269 ~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~-------~------~~~~~v~vI~ 335 (446)
...+...+... ..+.+|||||+|.+. ...+..+..+++.... . ....++.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~-----------~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLS-----------PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhC-----------HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222223222 245799999999993 3345555555543220 0 0123478999
Q ss_pred EeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 013281 336 ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 414 (446)
Q Consensus 336 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~ 414 (446)
+||++..+++++++ ||...+.|+.|+.++..++++..+....+. ++..+..++..+.| +++.+..+|..+...|..
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHH
Confidence 99999999999988 998889999999999999999887755443 33446788888887 568888999988777766
Q ss_pred hCCCCccHHHHHHHHHH
Q 013281 415 ERRMKVTHTDFKKAKEK 431 (446)
Q Consensus 415 ~~~~~It~~d~~~A~~~ 431 (446)
.....|+.+++..++..
T Consensus 212 ~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 212 RGQKIINRDIALKALEM 228 (305)
T ss_pred cCCCCcCHHHHHHHHHH
Confidence 66677999999998877
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.6e-18 Score=164.17 Aligned_cols=218 Identities=16% Similarity=0.200 Sum_probs=171.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
.+.+|++.+|++++++.+.-+|.....+. ....++|||||||.||||||+.+|++++.++-..+++.+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 46889999999999999999998753332 34568999999999999999999999999998888776532
Q ss_pred cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHh--c-----CCCC------CCCeE
Q 013281 266 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL--D-----GFDS------RGDVK 332 (446)
Q Consensus 266 ~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~l--d-----~~~~------~~~v~ 332 (446)
+..+..++.... ..+||||||||++ ++.+.+.|.-.++.. | |... -.++.
T Consensus 91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 ----PGDLAAILTNLE--EGDVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----hhhHHHHHhcCC--cCCeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 333444444433 2379999999999 444556665555432 1 1111 13689
Q ss_pred EEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 013281 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGADIKAICTEAGLL 411 (446)
Q Consensus 333 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l~~la~~t~g~s~~di~~l~~~A~~~ 411 (446)
+|+||.+...+...|+. ||.....+..++.++...|+......+.+.- +....++|.++.| +++--..|+++..-.
T Consensus 154 LIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDf 230 (332)
T COG2255 154 LIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDF 230 (332)
T ss_pred EeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHH
Confidence 99999999999999988 9999999999999999999999988777763 3446789999987 888888999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHH
Q 013281 412 ALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 412 Al~~~~~~It~~d~~~A~~~v~ 433 (446)
|.-++...|+.+-..+|+....
T Consensus 231 a~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 231 AQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHhcCCcccHHHHHHHHHHhC
Confidence 9888888898877777776543
No 55
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.3e-18 Score=183.83 Aligned_cols=222 Identities=48% Similarity=0.732 Sum_probs=196.7
Q ss_pred cCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEE
Q 013281 209 LPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIV 288 (446)
Q Consensus 209 ~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL 288 (446)
.|+.+++.|+.+++.++++++++||||||||++++++++. +..++.+++++...++.+......+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678899999999999999999999999999999999999 776688899999999999999999999999999999999
Q ss_pred EEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHH
Q 013281 289 FIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 368 (446)
Q Consensus 289 ~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~ 368 (446)
++||+|.+.+.+.... .........+++..++++. ...+.++.++|++..+++++++++||++.+.+..|+...+.
T Consensus 81 ~~d~~~~~~~~~~~~~---~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQ---GEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccc---cchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 9999999998875522 2223345556666666666 44488888999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------CCCccHHHHHHHHHHHHhh
Q 013281 369 RIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER------RMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 369 ~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~------~~~It~~d~~~A~~~v~~~ 435 (446)
+|+..+...+....+.++..++..+.|++++++..+|.++.+.+.++. ...++.++|..+++++...
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 999999999988888999999999999999999999999999998885 4568999999999998653
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.1e-18 Score=172.47 Aligned_cols=204 Identities=26% Similarity=0.349 Sum_probs=150.3
Q ss_pred CCCCcccccCcHHHHHH---HHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 186 PLESYADIGGLDAQIQE---IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~---l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
.+.++++++|++..+-. |+.+|+. ....+++|||||||||||||+.||..++..|..+++..
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 57899999999987743 6666665 23457999999999999999999999999999998653
Q ss_pred hhhcCCchHHHHHHHHHHhhcC----CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe-
Q 013281 263 QKYLGDGPKLVRELFRVADDLS----PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT- 337 (446)
Q Consensus 263 ~~~~g~~~~~v~~lf~~a~~~~----p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at- 337 (446)
.+-+.++.+++.|+... ..|||||||+++ +...|..|+-.++ .+.|++|+||
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE-------~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE-------NGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc-------CCeEEEEeccC
Confidence 34577889999986543 369999999999 5666777777764 5779999888
Q ss_pred -CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc--CCCC------CccCHHHHHHhCCCCcHHHHHHHHHHH
Q 013281 338 -NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR--MTLA------DDVNLEEFVMTKDEFSGADIKAICTEA 408 (446)
Q Consensus 338 -n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~--~~~~------~~~~l~~la~~t~g~s~~di~~l~~~A 408 (446)
|..-.++++|++ |. +++++.+.+.++...+++.-+.. ..+. ++..++.|+..++| |.+.+++..
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHH
Confidence 666789999999 87 48999999999999999884332 2332 22345667776665 666666655
Q ss_pred HHHHHHhCCC-CccHHHHHHHHHHHHh
Q 013281 409 GLLALRERRM-KVTHTDFKKAKEKVMF 434 (446)
Q Consensus 409 ~~~Al~~~~~-~It~~d~~~A~~~v~~ 434 (446)
.+.+...... .++.+++.+.+.+...
T Consensus 214 E~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 214 ELAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 5554443222 3447777777665433
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=1.3e-18 Score=191.49 Aligned_cols=225 Identities=23% Similarity=0.302 Sum_probs=168.6
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcE
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~ 253 (446)
...+.++++++|.+..+..+.+.+.. ....+++|+||||||||++|+++|+.+ +..+
T Consensus 175 ~~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~ 241 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKI 241 (731)
T ss_pred HHhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeE
Confidence 34567889999999999998887765 235579999999999999999999987 6789
Q ss_pred EEEechhhh--hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCe
Q 013281 254 LRVVGSELI--QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (446)
Q Consensus 254 i~v~~s~l~--~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 331 (446)
+.++++.+. .+|.|+.+..++.+|+.+..+.++||||||+|.|++.... ++++.+.+..|...|. ++.+
T Consensus 242 ~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~~~~~L~~~l~-------~g~i 312 (731)
T TIGR02639 242 YSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMDASNLLKPALS-------SGKL 312 (731)
T ss_pred EEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHHHHHHHHHHHh-------CCCe
Confidence 999998887 4789999999999999998878899999999999865422 2233344555554442 5789
Q ss_pred EEEEEeCCC-----CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC----CC-CCccCHHHHHHhCCCCc----
Q 013281 332 KVILATNRI-----ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TL-ADDVNLEEFVMTKDEFS---- 397 (446)
Q Consensus 332 ~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~----~~-~~~~~l~~la~~t~g~s---- 397 (446)
.+|++||.. ...|+++.| ||. .|+|+.|+.+++..|++...... .+ -.+..+..++..+..|-
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~ 389 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRF 389 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccccc
Confidence 999999863 357999999 997 79999999999999999765542 21 13344666666665543
Q ss_pred -HHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHHH
Q 013281 398 -GADIKAICTEAGLLALRE----RRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 398 -~~di~~l~~~A~~~Al~~----~~~~It~~d~~~A~~~v~ 433 (446)
+.-.-.++.+|+..+..+ ....|+.+|+..++....
T Consensus 390 ~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 390 LPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 333455666665433221 234599999999988753
No 58
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.80 E-value=5e-19 Score=194.44 Aligned_cols=222 Identities=20% Similarity=0.298 Sum_probs=150.1
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh--------
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI-------- 262 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~-------- 262 (446)
.++.|++.++++|.+++...... +-.....++|+||||||||++++.+|..++.+|++++.+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 35799999999999988753211 112334699999999999999999999999999998866532
Q ss_pred -hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHh------cCC----CCCCCe
Q 013281 263 -QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL------DGF----DSRGDV 331 (446)
Q Consensus 263 -~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~l------d~~----~~~~~v 331 (446)
..|.|..+..+...+..+....| ||||||+|.+.... ....+..|+++++.- |.+ ...+++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~-------~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM-------RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc-------CCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 24677777777666766654454 89999999996432 112456777777531 111 123689
Q ss_pred EEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc-----CCCC------CccCHHHHHHh-CCCCcHH
Q 013281 332 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR-----MTLA------DDVNLEEFVMT-KDEFSGA 399 (446)
Q Consensus 332 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~-----~~~~------~~~~l~~la~~-t~g~s~~ 399 (446)
++|+|+|.. .++++|++ ||. .|.|..++.++..+|++.|+.. ..+. .+..+..++.. +..+-.+
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR 542 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVR 542 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCc
Confidence 999999987 59999998 995 8999999999999999988742 1111 11123444432 2333345
Q ss_pred HHHH----HHHHHHHHHHHhC---CCCccHHHHHHHHHH
Q 013281 400 DIKA----ICTEAGLLALRER---RMKVTHTDFKKAKEK 431 (446)
Q Consensus 400 di~~----l~~~A~~~Al~~~---~~~It~~d~~~A~~~ 431 (446)
.|+. +|+.+....+..+ .-.|+.+++.+.+-.
T Consensus 543 ~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 543 SLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCC
Confidence 5554 4444443333332 236888888776654
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.78 E-value=3.5e-18 Score=186.54 Aligned_cols=224 Identities=25% Similarity=0.337 Sum_probs=165.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcE
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~ 253 (446)
.+..-.++.++|.++.+.++.+.+.. ....++||+||||||||++|+++|... +..+
T Consensus 179 ~a~~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~ 245 (758)
T PRK11034 179 LARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_pred HHHcCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeE
Confidence 34456788899999999999998776 234578999999999999999999864 4566
Q ss_pred EEEechhhh--hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCe
Q 013281 254 LRVVGSELI--QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (446)
Q Consensus 254 i~v~~s~l~--~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 331 (446)
+.++...+. .+|.|+.+..++.+|..+....++||||||||.|++.+.. +++..+..+.|..++. ++.+
T Consensus 246 ~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~-------~g~i 316 (758)
T PRK11034 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLS-------SGKI 316 (758)
T ss_pred EeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHh-------CCCe
Confidence 666666666 4678888999999999888888899999999999865421 2233444444544443 5789
Q ss_pred EEEEEeCCCC-----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHH-----HHHHh-----CCCC
Q 013281 332 KVILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLE-----EFVMT-----KDEF 396 (446)
Q Consensus 332 ~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~-----~la~~-----t~g~ 396 (446)
.+|++|+..+ ..|++|.| ||. .|.++.|+.+++..||+.+...+....++.+. ..+.. .+.+
T Consensus 317 ~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~ 393 (758)
T PRK11034 317 RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_pred EEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCcc
Confidence 9999998754 57999999 996 89999999999999999887766555455432 22222 2334
Q ss_pred cHHHHHHHHHHHHHHHH----HhCCCCccHHHHHHHHHHH
Q 013281 397 SGADIKAICTEAGLLAL----RERRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 397 s~~di~~l~~~A~~~Al----~~~~~~It~~d~~~A~~~v 432 (446)
.+.....++.+|+.... ......|+.+|+...+.+.
T Consensus 394 lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 394 LPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred ChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 56678888888875432 2234468888888877653
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.3e-17 Score=171.86 Aligned_cols=205 Identities=20% Similarity=0.241 Sum_probs=149.5
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|+|++|++.++..|+.++... +.+..+||+||||||||++|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 456788999999999999999999998862 235569999999999999999999988752
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
|+.+++.. ..+...++++.+.+. .....|+||||+|.+ +.+.+
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~ 138 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSF 138 (484)
T ss_pred CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHH
Confidence 22232211 112234455444433 224569999999999 45555
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..|++ ...++++|++|+.++.+.+++++ |+. .+.|..++.++...+++..+...++. .+..+..|+.
T Consensus 139 NALLKtLEE-----Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 139 NALLKTLEE-----PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred HHHHHHhhc-----CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666555542 35689999999999999999998 985 78999999999999998887765544 3445788888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~ 427 (446)
..+| +.++.-+++..+...+ ...||.+++.+
T Consensus 211 ~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~ 241 (484)
T PRK14956 211 KGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRK 241 (484)
T ss_pred HcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHH
Confidence 8887 7888888887665332 23466666544
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=2.9e-17 Score=172.94 Aligned_cols=212 Identities=25% Similarity=0.346 Sum_probs=151.8
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.+|++++.+.++++|+|.+.+++.|.+++..... | .+++++|||||||||||++|+++|++++..++.+++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 3588999999999999999999999999976431 1 236789999999999999999999999999999998
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhh------cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 259 SELIQKYLGDGPKLVRELFRVADD------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~~------~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
++.... ..+..+...+.. ..+.+|+|||+|.+... .+......+..++.. .+..
T Consensus 73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~~-------~~~~ 132 (482)
T PRK04195 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIKK-------AKQP 132 (482)
T ss_pred cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHHc-------CCCC
Confidence 764321 223333322221 24679999999998532 122344555555542 3455
Q ss_pred EEEEeCCCCCCCh-hhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 013281 333 VILATNRIESLDP-ALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGL 410 (446)
Q Consensus 333 vI~atn~~~~ld~-al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~ 410 (446)
+|+++|.+..+.+ .+++ |+ ..|.|+.|+..+...+++..+...++. .+..+..|+..+.| |++.+++....
T Consensus 133 iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 133 IILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred EEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 7888898887777 5554 55 589999999999999999888765543 33457777777654 67777766554
Q ss_pred HHHHhCCCCccHHHHHHH
Q 013281 411 LALRERRMKVTHTDFKKA 428 (446)
Q Consensus 411 ~Al~~~~~~It~~d~~~A 428 (446)
++ .+...|+.+++...
T Consensus 206 ~a--~~~~~it~~~v~~~ 221 (482)
T PRK04195 206 IA--EGYGKLTLEDVKTL 221 (482)
T ss_pred Hh--cCCCCCcHHHHHHh
Confidence 33 34456777776543
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=3.4e-17 Score=170.71 Aligned_cols=207 Identities=19% Similarity=0.231 Sum_probs=146.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---------- 251 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---------- 251 (446)
.+++.+.+|++++|++.+++.|..++... ..+.++|||||||||||++|+++|+.+.+
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 46778899999999999999999988763 34567999999999999999999998764
Q ss_pred --------------cEEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHH
Q 013281 252 --------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (446)
Q Consensus 252 --------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~ 313 (446)
.++.++++. ..+-..++.+.+.+.. ....||||||+|.+ ....+.
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~~ 135 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAFN 135 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHHH
Confidence 244444321 1122345555554432 13469999999999 333444
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHh
Q 013281 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMT 392 (446)
Q Consensus 314 ~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~ 392 (446)
.|+..+.. ..+.+++|++|+.+..+++++++ |+. .+.|..++.++...+++..+...++. .+..+..|+..
T Consensus 136 ~LLk~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 136 ALLKTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHHHHHh-----CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55444442 24578888888878889999988 885 89999999999999999887654433 34457788887
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013281 393 KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 393 t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
+.| +.+++-+.+..+...+ . ..||.+++..++.
T Consensus 208 s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 208 ASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred hCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 765 5566666665443322 2 3488888877764
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=2.9e-17 Score=175.29 Aligned_cols=193 Identities=17% Similarity=0.206 Sum_probs=145.1
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|++|+|++.+++.|+.++..- +.+..+||+||+|||||++|+++|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC 73 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC 73 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC
Confidence 456889999999999999999999998752 345678999999999999999999988652
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
+++++.+. ..+-..++.+++.+.. ....|+||||+|.| +...+
T Consensus 74 G~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~ 136 (830)
T PRK07003 74 GVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAF 136 (830)
T ss_pred cccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHH
Confidence 22222211 1123345666655432 23469999999999 44455
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
+.|+..|++ ...+++||++||.++.|.+.+++ || ..+.|..++.++...+|+..+...++. ++..+..|+.
T Consensus 137 NALLKtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 137 NAMLKTLEE-----PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred HHHHHHHHh-----cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666654 24579999999999999999998 99 589999999999999999888765544 3445778888
Q ss_pred hCCCCcHHHHHHHHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLL 411 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~ 411 (446)
..+| +.++..+++..+..+
T Consensus 209 ~A~G-smRdALsLLdQAia~ 227 (830)
T PRK07003 209 AAQG-SMRDALSLTDQAIAY 227 (830)
T ss_pred HcCC-CHHHHHHHHHHHHHh
Confidence 8887 778888887776543
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.8e-17 Score=174.78 Aligned_cols=192 Identities=18% Similarity=0.217 Sum_probs=142.5
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|+||+|.+.+++.|+.++... +.+..+||+||+|||||++|+.+|+.+.+.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 456788999999999999999999999862 345678999999999999999999988761
Q ss_pred ---------------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCC
Q 013281 253 ---------------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGG 307 (446)
Q Consensus 253 ---------------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~ 307 (446)
++.++.+. ..+-..++++.+.+.. ....|+||||+|.|
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------- 136 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------- 136 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------
Confidence 22222211 1123445555555432 23579999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCc-cCH
Q 013281 308 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNL 386 (446)
Q Consensus 308 ~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-~~l 386 (446)
+...++.|+.. |+. ...+++||++||.++.|.+.+++ |+ ..+.|..++.++..+.++..+....+..+ ..+
T Consensus 137 s~~AaNALLKT---LEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL 208 (700)
T PRK12323 137 TNHAFNAMLKT---LEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNAL 208 (700)
T ss_pred CHHHHHHHHHh---hcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHH
Confidence 44444444444 442 35678999999999999999998 98 58999999999999998887765554433 336
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHH
Q 013281 387 EEFVMTKDEFSGADIKAICTEAGL 410 (446)
Q Consensus 387 ~~la~~t~g~s~~di~~l~~~A~~ 410 (446)
..|+...+| +.++..+++..+..
T Consensus 209 ~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 209 RLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHH
Confidence 777888776 88888888876553
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.75 E-value=5.7e-17 Score=167.53 Aligned_cols=204 Identities=25% Similarity=0.329 Sum_probs=148.7
Q ss_pred cccCCCCCcccccCcHHHHHH---HHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 182 VEKAPLESYADIGGLDAQIQE---IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~---l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.++..+.++++++|.+..+.. +..++... ...+++|+||||||||++|+++|+.++..|+.+++
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 456678899999999999777 88888652 23479999999999999999999999999999987
Q ss_pred hhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 013281 259 SELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVI 334 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI 334 (446)
... +...++.++..+. .....||||||+|.+ ....+..|+..++ .+.+++|
T Consensus 70 ~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le-------~~~iilI 124 (413)
T PRK13342 70 VTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVE-------DGTITLI 124 (413)
T ss_pred ccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhh-------cCcEEEE
Confidence 642 2234455555553 224579999999998 4455666666554 2457777
Q ss_pred EEe--CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC--CC-C-CccCHHHHHHhCCCCcHHHHHHHHHHH
Q 013281 335 LAT--NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM--TL-A-DDVNLEEFVMTKDEFSGADIKAICTEA 408 (446)
Q Consensus 335 ~at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~--~~-~-~~~~l~~la~~t~g~s~~di~~l~~~A 408 (446)
++| |....+++++++ |+ ..+.|+.++.++...+++..+... .+ . .+..+..++..+.| +.+.+.+++..+
T Consensus 125 ~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 125 GATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred EeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 765 334578899998 88 589999999999999998876542 11 1 22335677777754 667777777665
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHH
Q 013281 409 GLLALRERRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 409 ~~~Al~~~~~~It~~d~~~A~~~v 432 (446)
... ...|+.+++..++...
T Consensus 201 ~~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 201 ALG-----VDSITLELLEEALQKR 219 (413)
T ss_pred HHc-----cCCCCHHHHHHHHhhh
Confidence 543 4568888888887754
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=6.7e-17 Score=164.25 Aligned_cols=208 Identities=18% Similarity=0.229 Sum_probs=149.8
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|++|+|++.+++.++.++... +.+..+||+||||||||++|+++|+.+.+.
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc 73 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPC 73 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456788899999999999999999998762 345678999999999999999999987642
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.++++. ......++.+.+.+.. ....|++|||+|.+ +...+
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~ 136 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSF 136 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHH
Confidence 12222110 0223445555554432 12459999999999 33445
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..+.+ ....+.+|++|+.++.+.+++.+ |+ ..++|++|+.++..+++...+...+.. ++..+..++.
T Consensus 137 naLLk~lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~ 208 (363)
T PRK14961 137 NALLKTLEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAY 208 (363)
T ss_pred HHHHHHHhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555543 24578888888888889999987 88 489999999999999999887765543 3345677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
.+.| +.+++.+++..+... +...|+.+++.+++.
T Consensus 209 ~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 209 HAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8776 788888888776533 345688888776543
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.74 E-value=1.5e-16 Score=159.58 Aligned_cols=214 Identities=19% Similarity=0.245 Sum_probs=147.3
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcE
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-----ATF 253 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~-----~~~ 253 (446)
.+|.+++.+.+|++++|.+.+++.+..++..+ ...+++|+||||||||++|+++++++. .++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~ 69 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccce
Confidence 35888999999999999999999999988752 123699999999999999999999874 357
Q ss_pred EEEechhhhhhh---c----------CC-------chHHHHHHHHHHhh-----cCCeEEEEcCcccccccccCCCCCCc
Q 013281 254 LRVVGSELIQKY---L----------GD-------GPKLVRELFRVADD-----LSPSIVFIDEIDAVGTKRYDAHSGGE 308 (446)
Q Consensus 254 i~v~~s~l~~~~---~----------g~-------~~~~v~~lf~~a~~-----~~p~IL~IDEid~l~~~r~~~~~~~~ 308 (446)
+.++++++.... . +. ....++.+...... ..+.+|+|||+|.+ .
T Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~ 138 (337)
T PRK12402 70 TEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------R 138 (337)
T ss_pred EEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------C
Confidence 788887654221 1 10 11223333322222 23469999999988 3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHH
Q 013281 309 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLE 387 (446)
Q Consensus 309 ~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~ 387 (446)
...+..|..+++.. .....+|++++.+..+.+.+.+ |+ ..+.|++|+.++...+++..+...++. .+..+.
T Consensus 139 ~~~~~~L~~~le~~-----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 139 EDAQQALRRIMEQY-----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHHHHHhc-----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34566666666543 2345677777776777778877 76 478999999999999999887765544 344577
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013281 388 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 388 ~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
.|+..+.| + ++.+++.....+. ....||.+++.+++.
T Consensus 211 ~l~~~~~g-d---lr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 211 LIAYYAGG-D---LRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHcCC-C---HHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 77877643 4 4445544444442 224688888877654
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=99.74 E-value=1.2e-16 Score=159.77 Aligned_cols=204 Identities=19% Similarity=0.145 Sum_probs=142.5
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEE
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-----ATFL 254 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~-----~~~i 254 (446)
.|++++.+.+|++++|.+.++..|+.++... ...++|||||||||||++|+++|+++. ..++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 3778999999999999999999999887652 123699999999999999999999873 2466
Q ss_pred EEechhhhhhhcCCchHHHHHHHHHH-h------hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC
Q 013281 255 RVVGSELIQKYLGDGPKLVRELFRVA-D------DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (446)
Q Consensus 255 ~v~~s~l~~~~~g~~~~~v~~lf~~a-~------~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 327 (446)
.++.++..+ ...++...... . .....||+|||+|.+ +...|..|...++..
T Consensus 69 eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~----- 126 (319)
T PLN03025 69 ELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY----- 126 (319)
T ss_pred eeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc-----
Confidence 666654321 12333332221 1 123579999999999 455677777776532
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHH
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICT 406 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~ 406 (446)
...+.+|++||....+.+++++ |+. .++|+.|+.++...+++..+...++. .+..+..++....| +.+.+.+.++
T Consensus 127 ~~~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 127 SNTTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred cCCceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 2346788899988888899988 874 89999999999999999888765543 34457777777665 4444444444
Q ss_pred HHHHHHHHhCCCCccHHHHHH
Q 013281 407 EAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 407 ~A~~~Al~~~~~~It~~d~~~ 427 (446)
.+ +. +...|+.+++.+
T Consensus 203 ~~---~~--~~~~i~~~~v~~ 218 (319)
T PLN03025 203 AT---HS--GFGFVNQENVFK 218 (319)
T ss_pred HH---Hh--cCCCCCHHHHHH
Confidence 21 11 234566666543
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=8.1e-17 Score=170.26 Aligned_cols=205 Identities=17% Similarity=0.211 Sum_probs=151.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---------- 251 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---------- 251 (446)
.+++.+.+|++|+|.+.+++.|+.++... +.+..+||+||+|||||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 46778899999999999999999999862 34567999999999999999999998865
Q ss_pred --------------cEEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHH
Q 013281 252 --------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (446)
Q Consensus 252 --------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~ 313 (446)
.++.++++. ......++.+...+.. ....|+||||+|.| +...+.
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~N 136 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFN 136 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHH
Confidence 223333321 1123445555554432 23569999999999 444556
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHh
Q 013281 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMT 392 (446)
Q Consensus 314 ~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~ 392 (446)
.|+..|++ ....+.+|++|+.+..+.+.+++ |+. .+.|..++.++....+...+...++. .+..+..|+..
T Consensus 137 ALLKtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 137 ALLKTLEE-----PPEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHHHHHhc-----CCCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66666653 24578899999888888888887 884 89999999999999998888766554 33457788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 393 KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 393 t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
+.| +.+++.+++..+... +...|+.+++...
T Consensus 209 S~G-dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 209 AQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 776 888888888766532 3456777776553
No 70
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.74 E-value=1.6e-16 Score=161.39 Aligned_cols=220 Identities=25% Similarity=0.340 Sum_probs=150.2
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEechhh
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---------ATFLRVVGSEL 261 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---------~~~i~v~~s~l 261 (446)
+++.|.+++++.|..++...+. + ..+.+++|+||||||||++++++++++. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4689999999999998875322 1 2356799999999999999999998653 46888888653
Q ss_pred hh----------hhc--CC--------chHHHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHH
Q 013281 262 IQ----------KYL--GD--------GPKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (446)
Q Consensus 262 ~~----------~~~--g~--------~~~~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (446)
.. ... +. .......++..... ..+.||+|||+|.+... . +..+..++.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~---~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D---DDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C---cHHHHhHhc
Confidence 22 111 11 12233444444432 34679999999999521 1 123444443
Q ss_pred HhcCC-CCCCCeEEEEEeCCCC---CCChhhcCCCcee-eEEEcCCCCHHHHHHHHHHHHcc-CC--CCCccCHHH---H
Q 013281 321 QLDGF-DSRGDVKVILATNRIE---SLDPALLRPGRID-RKIEFPLPDIKTRRRIFQIHTSR-MT--LADDVNLEE---F 389 (446)
Q Consensus 321 ~ld~~-~~~~~v~vI~atn~~~---~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~~~~-~~--~~~~~~l~~---l 389 (446)
..+.. ....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++.. .. .-.+..++. +
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 31111 1235789999999875 47777776 664 67999999999999999988752 11 111222233 3
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013281 390 VMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 390 a~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~ 433 (446)
+..+.| ..+.+..+|..|...|..++...|+.+|+..|+..+.
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 344455 5677788999999999998889999999999988764
No 71
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5e-17 Score=171.10 Aligned_cols=206 Identities=17% Similarity=0.182 Sum_probs=151.2
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|+||+|.+.+++.|+.++... ..+..+||+||||||||++|+++|+.+.+.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 467889999999999999999999999762 345678999999999999999999988652
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
+++++++. ..+-..++.+...+.. ....|+||||+|.+ +...+
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~ 136 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSF 136 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHH
Confidence 44444321 1223345665554432 23469999999999 44455
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..|++ ....+.+|++|+.+..+.+.+++ |+ ..++|..++.++....++..+...++. .+..+..|+.
T Consensus 137 naLLk~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 137 NALLKTLEE-----PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHHHHHhc-----cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555553 24578899999888888888888 88 478899999999888888887766554 3345777888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
.+.| +.+++.+++..+... +...||.+++...
T Consensus 209 ~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 209 AANG-SVRDALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred HcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 8776 888999988776433 2456777766554
No 72
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.9e-16 Score=169.37 Aligned_cols=206 Identities=19% Similarity=0.253 Sum_probs=149.8
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|++|+|.+.+++.|+..+..- +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPC 73 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCC
Confidence 345678899999999999999999999862 345568999999999999999999988662
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
|+.++++. ...-..++.+...+.. ....|+||||+|.| +...+
T Consensus 74 g~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~ 136 (647)
T PRK07994 74 GECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSF 136 (647)
T ss_pred CCCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHH
Confidence 22232221 0122345555544332 24469999999999 55566
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..|++ ...+++||++|+.+..|.+.+++ |+ ..+.|..++.++....|+..+....+. .+..+..|+.
T Consensus 137 NALLKtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 137 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred HHHHHHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666653 35678899999999999999998 87 689999999999999998887655443 3345677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
.+.| +.++..+++..|... +...|+.+++...
T Consensus 209 ~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~ 240 (647)
T PRK07994 209 AADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAM 240 (647)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 8877 888888888766432 2234666555543
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.8e-16 Score=166.08 Aligned_cols=217 Identities=15% Similarity=0.218 Sum_probs=155.1
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE-----
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFL----- 254 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i----- 254 (446)
....++.+.+|+|++|++.+++.|+.++..- +.+.++||+||||||||++|+++|+.+++...
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~ 77 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT 77 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc
Confidence 3567889999999999999999999988762 34678999999999999999999998865211
Q ss_pred -------EEechhhhhh----------hcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHHH
Q 013281 255 -------RVVGSELIQK----------YLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (446)
Q Consensus 255 -------~v~~s~l~~~----------~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~ 313 (446)
..+|..+... ....+...++.+++.+... ...|++|||+|.+ +...+.
T Consensus 78 ~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~n 146 (507)
T PRK06645 78 TIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAFN 146 (507)
T ss_pred CcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHHH
Confidence 0011111110 0112345567777666432 3469999999998 333444
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHh
Q 013281 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMT 392 (446)
Q Consensus 314 ~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~ 392 (446)
.|+..|++ ....+++|++|+..+.+.+.+.+ |+ ..++|..++.++...+++..+...+.. ++..+..|+..
T Consensus 147 aLLk~LEe-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 147 ALLKTLEE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHhh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45444442 35678899999888889999988 88 479999999999999999998776654 33457788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 393 KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 393 t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
+.| +.+++.+++..+..++-. ....||.+++...+
T Consensus 219 s~G-slR~al~~Ldkai~~~~~-~~~~It~~~V~~ll 253 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMSAK-SDNIISPQVINQML 253 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHH
Confidence 876 889998888887655421 12357777766543
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.6e-16 Score=170.95 Aligned_cols=197 Identities=18% Similarity=0.177 Sum_probs=142.3
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFL------ 254 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i------ 254 (446)
..+++.+.+|++|+|.+.+++.|+.++... +.+..+||+||||||||++|+++|+.+.+...
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pC 73 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC 73 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCC
Confidence 356788899999999999999999998762 34566799999999999999999999876310
Q ss_pred -EE-echhhhhhh------c----CCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHH
Q 013281 255 -RV-VGSELIQKY------L----GDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLEL 318 (446)
Q Consensus 255 -~v-~~s~l~~~~------~----g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~l 318 (446)
.+ .|-.+.... + ......++.+...+.. ....|+||||+|.| +.+.+..|+..
T Consensus 74 g~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKt 142 (944)
T PRK14949 74 GVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKT 142 (944)
T ss_pred CCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHH
Confidence 00 011111100 0 0122345555544332 23469999999999 55566666666
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCc
Q 013281 319 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFS 397 (446)
Q Consensus 319 L~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s 397 (446)
|++ ...++++|++|+.+..|.+.+++ |+ ..+.|..++.++...+|+..+....+. .+..+..|+..+.| +
T Consensus 143 LEE-----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 143 LEE-----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred Hhc-----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 653 35678899999988889999988 88 589999999999999998877654433 33347778888877 8
Q ss_pred HHHHHHHHHHHH
Q 013281 398 GADIKAICTEAG 409 (446)
Q Consensus 398 ~~di~~l~~~A~ 409 (446)
.+++.++|..|.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 889999988766
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.72 E-value=8.1e-16 Score=157.92 Aligned_cols=222 Identities=24% Similarity=0.274 Sum_probs=150.4
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhh-
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVVGSELIQ- 263 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i~v~~s~l~~- 263 (446)
.+.+.|.++.+++|...+...+.. ..+.+++|+||||||||++++.+++++ +..+++++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 355799999999999988653221 235579999999999999999999876 46788998864321
Q ss_pred ---------hhcC-------Cc-hHHHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC
Q 013281 264 ---------KYLG-------DG-PKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF 325 (446)
Q Consensus 264 ---------~~~g-------~~-~~~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 325 (446)
...+ .. ......+...... ..+.||+|||+|.+.... . +..+..++..++..
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~---~~~l~~l~~~~~~~ 169 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------G---NDVLYSLLRAHEEY 169 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------C---chHHHHHHHhhhcc
Confidence 1111 11 2223333333332 245799999999996111 1 12344444433322
Q ss_pred CCCCCeEEEEEeCCCC---CCChhhcCCCce-eeEEEcCCCCHHHHHHHHHHHHccCC---CCCccCHHHHHHhCCC--C
Q 013281 326 DSRGDVKVILATNRIE---SLDPALLRPGRI-DRKIEFPLPDIKTRRRIFQIHTSRMT---LADDVNLEEFVMTKDE--F 396 (446)
Q Consensus 326 ~~~~~v~vI~atn~~~---~ld~al~r~gRf-~~~i~~~~P~~~er~~Il~~~~~~~~---~~~~~~l~~la~~t~g--~ 396 (446)
. ..++.+|+++|..+ .+++.+.+ |+ ...+.|++++.++..+|++.++..-. .-.+..++.++..+.+ .
T Consensus 170 ~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 170 P-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred C-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 1 23788999998754 46777765 55 35789999999999999998875321 1123335666666632 2
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013281 397 SGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 397 s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~ 433 (446)
..+.+..+|..|+..|..++...|+.+|+..|+..+.
T Consensus 247 d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 247 DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 4566668899999999998899999999999998763
No 76
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.72 E-value=3e-16 Score=156.40 Aligned_cols=164 Identities=21% Similarity=0.270 Sum_probs=122.1
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.++.+++.+.+|++++|.+.+++.++.++... ..+..+||+||||+|||++|+++|++.+..++.+++
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 57899999999999999999999999998751 235567779999999999999999999999999988
Q ss_pred hhhhhhhcCCchHHHHHHHHHHh-hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 259 SELIQKYLGDGPKLVRELFRVAD-DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~-~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
+. .. +......+........ ...+.+|+|||+|.+. ..+.+..|..+++.. ..++.+|++|
T Consensus 77 ~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt~ 138 (316)
T PHA02544 77 SD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIITA 138 (316)
T ss_pred Cc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEEc
Confidence 76 11 1111111222111111 1246899999999883 223455666666542 3567899999
Q ss_pred CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHH
Q 013281 338 NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (446)
Q Consensus 338 n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~ 375 (446)
|.+..+.+++++ ||. .+.|+.|+.+++..+++.++
T Consensus 139 n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 139 NNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred CChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 999999999988 885 88999999999988776543
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=3.1e-16 Score=167.26 Aligned_cols=207 Identities=20% Similarity=0.239 Sum_probs=152.0
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|+||+|.+.+++.|+.++... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC 73 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC 73 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC
Confidence 456788999999999999999999998862 346789999999999999999999987642
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.++.+ ...+...++.++..+.. ....||||||+|.+ +...+
T Consensus 74 g~C~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~ 136 (709)
T PRK08691 74 GVCQSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAF 136 (709)
T ss_pred cccHHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHH
Confidence 1122211 11233456666665432 23469999999988 34444
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..|++ ....+.+|++|+.+..+.+.+++ |+ ..+.|+.++.++...+++..+...++. ++..+..|+.
T Consensus 137 NALLKtLEE-----Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~ 208 (709)
T PRK08691 137 NAMLKTLEE-----PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGR 208 (709)
T ss_pred HHHHHHHHh-----CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 555555543 24578899999999999999987 88 478899999999999999888876654 3345778888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
...| +.+++.+++..+... +...|+.+++...+
T Consensus 209 ~A~G-slRdAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 209 AAAG-SMRDALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HhCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8876 889999998876654 23457776665543
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3.6e-16 Score=162.69 Aligned_cols=205 Identities=17% Similarity=0.266 Sum_probs=152.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---------- 251 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---------- 251 (446)
..++.+.+|+||+|++.+++.|+.++..- +.+.++||+||+|||||++|+.+|+.+.+
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 45778899999999999999999988762 44678999999999999999999997643
Q ss_pred --------------cEEEEechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHHH
Q 013281 252 --------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (446)
Q Consensus 252 --------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~ 313 (446)
.++.+++++ ..+-..++.+.+.+... ...|++|||+|.+ +.+.+.
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~N 134 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFN 134 (491)
T ss_pred ccHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHH
Confidence 234444432 12334566666665432 3469999999999 334444
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHh
Q 013281 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMT 392 (446)
Q Consensus 314 ~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~ 392 (446)
.|+..| +. ....+++|++|+.++.+.+.+++ |+. .+.|..++.++...++...+...+.. ++..+..|+..
T Consensus 135 aLLK~L---Ee--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~ 206 (491)
T PRK14964 135 ALLKTL---EE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN 206 (491)
T ss_pred HHHHHH---hC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 454444 43 24578899999888889999988 884 79999999999999999888766554 34457788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 393 KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 393 t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
+.| +.+++.+++..+..++ + ..||.+++...
T Consensus 207 s~G-slR~alslLdqli~y~---~-~~It~e~V~~l 237 (491)
T PRK14964 207 SSG-SMRNALFLLEQAAIYS---N-NKISEKSVRDL 237 (491)
T ss_pred cCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHH
Confidence 876 8888888888776543 2 36888777664
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=8.8e-16 Score=161.42 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=145.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---------- 252 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~---------- 252 (446)
+++.+.+|+||+|++.++..|+.++... ..+..+|||||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 6788899999999999999999998862 345667999999999999999999987531
Q ss_pred -------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHH
Q 013281 253 -------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM 315 (446)
Q Consensus 253 -------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l 315 (446)
++.++++. ..+...++++...+.. ..+.||+|||+|.+ +...+..
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~na- 135 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNA- 135 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHH-
Confidence 33343321 1123345555444332 24579999999988 3333444
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCC
Q 013281 316 LELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKD 394 (446)
Q Consensus 316 ~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~ 394 (446)
|+..++. ....+++|++|+.+..+.+.+.+ |+. .++|..|+.++...+++..+...++. ++..+..|+..+.
T Consensus 136 --LLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 136 --LLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred --HHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4444443 23567888889988899999987 875 89999999999999999988766654 3345778888887
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 395 EFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 395 g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
| +.+++.+++..+... ...||.+++..+
T Consensus 209 G-dlR~aln~Lekl~~~-----~~~It~~~V~~~ 236 (504)
T PRK14963 209 G-AMRDAESLLERLLAL-----GTPVTRKQVEEA 236 (504)
T ss_pred C-CHHHHHHHHHHHHhc-----CCCCCHHHHHHH
Confidence 6 677777777765332 236787776655
No 80
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=9.8e-16 Score=160.11 Aligned_cols=220 Identities=20% Similarity=0.290 Sum_probs=148.9
Q ss_pred CCCCccc-ccCcHH--HHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 013281 186 PLESYAD-IGGLDA--QIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVV 257 (446)
Q Consensus 186 ~~~~~~d-i~Gl~~--~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i~v~ 257 (446)
+..+|++ ++|.+. +...+++....| + ....+++||||||||||+|++++++++ +..+++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4557777 344333 455555555442 1 123469999999999999999999987 56788999
Q ss_pred chhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 258 GSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 258 ~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
+.++...+..........-|..... .+.+|+|||+|.+..+ ...+..++.+++.+.. .+.. +|+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~l~~---~~~~-iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK---------ERTQEEFFHTFNALHE---AGKQ-IVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC---------HHHHHHHHHHHHHHHH---CCCc-EEEEC
Confidence 9888765543221111122222222 4679999999998432 2345666666665532 2233 44455
Q ss_pred CC-CCC---CChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 013281 338 NR-IES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGL 410 (446)
Q Consensus 338 n~-~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~ 410 (446)
|. +.. +++.+.+ ||. ..++|..|+.++|..|++..+....+. ++..++.||....| +.+++..++.....
T Consensus 252 ~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 252 DRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 44 433 6788887 885 589999999999999999998765443 33447788888776 88899988888877
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHh
Q 013281 411 LALRERRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 411 ~Al~~~~~~It~~d~~~A~~~v~~ 434 (446)
.|...+ ..||.+.+..++..+..
T Consensus 329 ~~~~~~-~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 329 YASLTG-KPITLELAKEALKDLLA 351 (450)
T ss_pred HHHhhC-CCCCHHHHHHHHHHhhc
Confidence 776654 45899988888887654
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.69 E-value=9.2e-16 Score=170.49 Aligned_cols=221 Identities=20% Similarity=0.250 Sum_probs=156.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----------CcE
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----------ATF 253 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~----------~~~ 253 (446)
...+.++++++|.+..+.++.+.+.. ....+++|+||||||||++|+.+|+.+. ..+
T Consensus 180 ~~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i 246 (852)
T TIGR03345 180 QAREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRL 246 (852)
T ss_pred HhcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeE
Confidence 44567899999999998888887655 2345799999999999999999999762 457
Q ss_pred EEEechhhh--hhhcCCchHHHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Q 013281 254 LRVVGSELI--QKYLGDGPKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (446)
Q Consensus 254 i~v~~s~l~--~~~~g~~~~~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 330 (446)
+.++.+.+. ..|.|+.+..++.+|..+.. ..+.||||||||.+.+.+... +..+....|...| .++.
T Consensus 247 ~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~n~Lkp~l-------~~G~ 316 (852)
T TIGR03345 247 LSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGDAANLLKPAL-------ARGE 316 (852)
T ss_pred EEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---ccccHHHHhhHHh-------hCCC
Confidence 777777765 36788889999999998865 357899999999997654221 1112222333332 3678
Q ss_pred eEEEEEeCCC-----CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC----CC-CccCHHHHHHhCCCCc---
Q 013281 331 VKVILATNRI-----ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LA-DDVNLEEFVMTKDEFS--- 397 (446)
Q Consensus 331 v~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~----~~-~~~~l~~la~~t~g~s--- 397 (446)
+.+|+||+.. -.+|++|.| ||. .|.|+.|+.++...||+.+..... +. .+..+..++..+.+|.
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r 393 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccc
Confidence 9999999863 358999999 995 899999999999999876654432 21 3445677777776654
Q ss_pred --HHHHHHHHHHHHHHH-HHhCCCCccHHHHHHHHH
Q 013281 398 --GADIKAICTEAGLLA-LRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 398 --~~di~~l~~~A~~~A-l~~~~~~It~~d~~~A~~ 430 (446)
+...-.++.+|+... +......+..+++...+.
T Consensus 394 ~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~ 429 (852)
T TIGR03345 394 QLPDKAVSLLDTACARVALSQNATPAALEDLRRRIA 429 (852)
T ss_pred cCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 444556677765443 333444555555554443
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1e-15 Score=161.37 Aligned_cols=206 Identities=18% Similarity=0.262 Sum_probs=147.6
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------- 251 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--------- 251 (446)
..+++.+.+|++++|.+.+++.|..++... +.+..+||+||+|||||++|+++|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC 73 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 456778899999999999999999998762 34566899999999999999999998764
Q ss_pred ---------------cEEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 252 ---------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 252 ---------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
.++.+++.. ..+...++.+.+.+.. ....|+||||+|.+ +...+
T Consensus 74 g~C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~ 136 (546)
T PRK14957 74 NKCENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSF 136 (546)
T ss_pred cccHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHH
Confidence 222232211 0112334445444332 23569999999999 45556
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..|++ ....+++|++|+.+..+.+.+++ |+ ..++|..++.++...++...+...++. ++..+..|+.
T Consensus 137 naLLK~LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 137 NALLKTLEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHHhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666653 24578888888888888888887 88 589999999999998888877665544 3344677787
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
.+.| +.+++.+++..+...+ + ..|+.+++..+
T Consensus 209 ~s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 209 HAKG-SLRDALSLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 7765 7788888887665432 1 45777776654
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.69 E-value=9.4e-16 Score=166.91 Aligned_cols=209 Identities=19% Similarity=0.234 Sum_probs=145.5
Q ss_pred hcccCCCCCcccccCcHHHHH---HHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 181 KVEKAPLESYADIGGLDAQIQ---EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~---~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
..++..+.+|++++|.+..+. .++.++.. ....+++||||||||||++|+++|+.++.+|+.++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 445667899999999999885 56666654 12347999999999999999999999999999888
Q ss_pred chhhhhhhcCCchHHHHHHHHHHh-----hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 258 GSELIQKYLGDGPKLVRELFRVAD-----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 258 ~s~l~~~~~g~~~~~v~~lf~~a~-----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
+.... ...++..+..+. .....+|||||||.+ +...+..|+..++ .+.++
T Consensus 85 a~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE-------~g~Ii 139 (725)
T PRK13341 85 AVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVE-------NGTIT 139 (725)
T ss_pred hhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhc-------CceEE
Confidence 75311 122333333331 123569999999998 4445666655443 35677
Q ss_pred EEEEeCC--CCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc-------CCCC-CccCHHHHHHhCCCCcHHHHH
Q 013281 333 VILATNR--IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR-------MTLA-DDVNLEEFVMTKDEFSGADIK 402 (446)
Q Consensus 333 vI~atn~--~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~-------~~~~-~~~~l~~la~~t~g~s~~di~ 402 (446)
+|++|.. ...+++++++ |+ ..+.|++++.++...+++..+.. ..+. ++..++.|+....| +.+.+.
T Consensus 140 LI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~ll 215 (725)
T PRK13341 140 LIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLL 215 (725)
T ss_pred EEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHH
Confidence 7877643 3468889988 76 47999999999999999988762 2222 23346778887755 677788
Q ss_pred HHHHHHHHHHHHhC--CCCccHHHHHHHHHH
Q 013281 403 AICTEAGLLALRER--RMKVTHTDFKKAKEK 431 (446)
Q Consensus 403 ~l~~~A~~~Al~~~--~~~It~~d~~~A~~~ 431 (446)
++++.|...+.... ...|+.+++.+++.+
T Consensus 216 n~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 216 NALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 88877664332222 223788888888766
No 84
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.69 E-value=1.5e-15 Score=151.21 Aligned_cols=208 Identities=20% Similarity=0.235 Sum_probs=144.4
Q ss_pred hhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----Cc
Q 013281 178 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-----AT 252 (446)
Q Consensus 178 ~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~-----~~ 252 (446)
+.+|.+++.+.+|+|++|.++++..+..++... ...+++||||||||||++++++++++. ..
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 457899999999999999999999999998752 123589999999999999999999873 24
Q ss_pred EEEEechhhhhhhcCCchHHHHHHH-HHHhh-----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC
Q 013281 253 FLRVVGSELIQKYLGDGPKLVRELF-RVADD-----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD 326 (446)
Q Consensus 253 ~i~v~~s~l~~~~~g~~~~~v~~lf-~~a~~-----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 326 (446)
++.++++... ....++..+ ..+.. ..+.+|+|||+|.+ ....+..|..+++..
T Consensus 71 ~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~---- 129 (319)
T PRK00440 71 FLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMY---- 129 (319)
T ss_pred eEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcC----
Confidence 5555544321 111122221 22211 23569999999998 333455566655432
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHH
Q 013281 327 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAIC 405 (446)
Q Consensus 327 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~ 405 (446)
...+.+|+++|....+.+++.+ |+. .++|++++.++...+++.++...++. .+..+..++..+.| +.+.+.+.+
T Consensus 130 -~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l 204 (319)
T PRK00440 130 -SQNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINAL 204 (319)
T ss_pred -CCCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 2346778888887777778877 775 68999999999999999988776653 34457788887765 555555555
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHH
Q 013281 406 TEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 406 ~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
..+... ...||.+++..++
T Consensus 205 ~~~~~~-----~~~it~~~v~~~~ 223 (319)
T PRK00440 205 QAAAAT-----GKEVTEEAVYKIT 223 (319)
T ss_pred HHHHHc-----CCCCCHHHHHHHh
Confidence 544332 3568888777665
No 85
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.69 E-value=1.5e-15 Score=156.65 Aligned_cols=219 Identities=21% Similarity=0.292 Sum_probs=145.8
Q ss_pred CCCCccc-ccCcHH--HHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 013281 186 PLESYAD-IGGLDA--QIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVV 257 (446)
Q Consensus 186 ~~~~~~d-i~Gl~~--~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i~v~ 257 (446)
+..+|++ ++|.+. +...+.+....| + ....+++||||||||||+|++++++++ +..+++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4457777 556544 333444444432 1 123569999999999999999999976 56789999
Q ss_pred chhhhhhhcCCchH-HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 013281 258 GSELIQKYLGDGPK-LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336 (446)
Q Consensus 258 ~s~l~~~~~g~~~~-~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~a 336 (446)
+.++...+...... .+........ .+.+|+|||+|.+..+ ...+..++.+++.+.. .+.. +|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~~~~---~~~~-iiit 238 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK---------ERTQEEFFHTFNALHE---NGKQ-IVLT 238 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC---------HHHHHHHHHHHHHHHH---CCCC-EEEe
Confidence 98877654322111 1111222222 3579999999998532 2345667777765532 2233 4555
Q ss_pred eCC-CC---CCChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHH
Q 013281 337 TNR-IE---SLDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAG 409 (446)
Q Consensus 337 tn~-~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~ 409 (446)
+|. +. .+++.+.+ ||. ..+.|+.|+.++|..|++..+....+. ++..++.||....+ +.+++..++....
T Consensus 239 s~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 239 SDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred cCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 543 43 36678877 885 479999999999999999998765544 34447788887775 7889998888877
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHh
Q 013281 410 LLALRERRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 410 ~~Al~~~~~~It~~d~~~A~~~v~~ 434 (446)
..|...+ ..||.+.+..++.....
T Consensus 316 ~~a~~~~-~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 316 AYASLTG-KPITLELAKEALKDLLR 339 (405)
T ss_pred HHHHHhC-CCCCHHHHHHHHHHhcc
Confidence 7775544 45888888888776644
No 86
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=7.8e-16 Score=164.27 Aligned_cols=206 Identities=16% Similarity=0.200 Sum_probs=148.2
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|++|+|.+.+++.|+.++..- +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 567888999999999999999999998862 345678999999999999999999988651
Q ss_pred ---------------------EEEEechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCC
Q 013281 253 ---------------------FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGG 307 (446)
Q Consensus 253 ---------------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~ 307 (446)
++.++++. ..+-..++++.+.+... ...|++|||+|.|
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------- 136 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------- 136 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------
Confidence 12222111 11233456666554322 2359999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCH
Q 013281 308 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNL 386 (446)
Q Consensus 308 ~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l 386 (446)
+...+..|+ ..++. ....+.+|++|+.+..+.+.+++ |+ ..++|..++.++...+++..+...++.. +..+
T Consensus 137 s~~a~NaLL---KtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL 208 (618)
T PRK14951 137 TNTAFNAML---KTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQAL 208 (618)
T ss_pred CHHHHHHHH---Hhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 343444444 44442 24678899999888888888888 88 5899999999999999998877665543 3447
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 387 EEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 387 ~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
..|+..+.| +.+++.+++..+... ....||.+++.+.
T Consensus 209 ~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 245 (618)
T PRK14951 209 RLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQM 245 (618)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 788888876 888888887665543 2345776666544
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.69 E-value=8.2e-16 Score=147.30 Aligned_cols=194 Identities=20% Similarity=0.224 Sum_probs=139.2
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------cE
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA------TF 253 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~------~~ 253 (446)
.|.+++.+.+|+++.|++.+++.|+.++.. ..-.++|||||||||||+.|+++|+++.. .+
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 378899999999999999999999999876 12336999999999999999999999876 22
Q ss_pred EEEechhhhhhhcCCchHHHHHHHHHHhhc---------CC-eEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc
Q 013281 254 LRVVGSELIQKYLGDGPKLVRELFRVADDL---------SP-SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD 323 (446)
Q Consensus 254 i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~---------~p-~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 323 (446)
...+.+...+..+ ....+. -|...... .| .|++|||+|.+ ..+.|.+|...++.
T Consensus 92 l~lnaSderGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~-- 155 (346)
T KOG0989|consen 92 LELNASDERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED-- 155 (346)
T ss_pred hhhcccccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc--
Confidence 3334443332221 111111 12222111 12 59999999999 56677777777653
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCc-cCHHHHHHhCCCCcHHHHH
Q 013281 324 GFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVMTKDEFSGADIK 402 (446)
Q Consensus 324 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-~~l~~la~~t~g~s~~di~ 402 (446)
....+++|+.||..+.+...+.+ |+. ++.|+....+.....|+....+.++.-+ ..+..|+...+| +-++-.
T Consensus 156 ---~s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 156 ---FSRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred ---cccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 24678999999999999999988 996 8889988888888888888887776633 446777887776 444444
Q ss_pred HHHHHHH
Q 013281 403 AICTEAG 409 (446)
Q Consensus 403 ~l~~~A~ 409 (446)
..++.+.
T Consensus 229 t~Lqsls 235 (346)
T KOG0989|consen 229 TTLQSLS 235 (346)
T ss_pred HHHHHhh
Confidence 4444443
No 88
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=6.5e-16 Score=163.64 Aligned_cols=207 Identities=19% Similarity=0.232 Sum_probs=149.1
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|++|+|.+.+++.|..++... +.+..+||+||||||||++|+++|+.+.+.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pc 73 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPC 73 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 356778899999999999999999998862 345678999999999999999999988652
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.++++. ......++.+...+... ...|+||||+|.+ +.+.+
T Consensus 74 g~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~ 136 (527)
T PRK14969 74 GVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAF 136 (527)
T ss_pred CCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHH
Confidence 12222110 12234566666655432 2469999999999 34444
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..|++ ....+.+|++|+.++.+.+.+++ |+ ..++|..++.++....+...+...++. .+..+..|+.
T Consensus 137 naLLK~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~ 208 (527)
T PRK14969 137 NAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLAR 208 (527)
T ss_pred HHHHHHHhC-----CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555443 24678899999888888888887 88 589999999999998888877655544 2334677787
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
.+.| +.+++.+++..|... +...|+.+++...+
T Consensus 209 ~s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 209 AAAG-SMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 7775 788888888876543 34567777776654
No 89
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=2.6e-15 Score=160.06 Aligned_cols=204 Identities=19% Similarity=0.256 Sum_probs=148.6
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---------- 251 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---------- 251 (446)
..++.+.+|++|+|.+.+++.|+.++... ..++.+|||||+|||||++|+.+|+.+.+
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 36778899999999999999999999862 34567899999999999999999998753
Q ss_pred --------------cEEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHH
Q 013281 252 --------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (446)
Q Consensus 252 --------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~ 313 (446)
.++.++++. +.+...++++.+.+.. ....|++|||+|.| +.....
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~n 137 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFN 137 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHH
Confidence 233333321 1234456666666543 23469999999999 333344
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHh
Q 013281 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMT 392 (446)
Q Consensus 314 ~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~ 392 (446)
.| |..++. ....+++|++|+.++.+.+.+++ |+. .+.|+.|+.++...+++..+...++. ++..+..++..
T Consensus 138 aL---LKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~ 209 (559)
T PRK05563 138 AL---LKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARA 209 (559)
T ss_pred HH---HHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44 444443 24578888888888999999988 885 78999999999999999888776654 33446777887
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 013281 393 KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 393 t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~ 427 (446)
..| +.+++.+++..+...+ ...||.+|+..
T Consensus 210 s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~ 239 (559)
T PRK05563 210 AEG-GMRDALSILDQAISFG----DGKVTYEDALE 239 (559)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 776 7888888887765542 34577665544
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.68 E-value=6.6e-16 Score=150.47 Aligned_cols=208 Identities=25% Similarity=0.388 Sum_probs=143.6
Q ss_pred ccCCCCCcccccCcHHHHHH---HHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEE
Q 013281 183 EKAPLESYADIGGLDAQIQE---IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---FLRV 256 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~---l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~---~i~v 256 (446)
+...+.+++|.+|++..+.+ |+..|+. ..-.+++||||||||||+||+.|+.....+ |+.+
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 34467788998998887655 5555554 123369999999999999999999987655 6666
Q ss_pred echhhhhhhcCCchHHHHHHHHHHhhc-----CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCe
Q 013281 257 VGSELIQKYLGDGPKLVRELFRVADDL-----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (446)
Q Consensus 257 ~~s~l~~~~~g~~~~~v~~lf~~a~~~-----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 331 (446)
++.. .....++++|+.+... +..|||||||+.+ +...|.+++-.++ .+.|
T Consensus 197 SAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~VE-------~G~I 251 (554)
T KOG2028|consen 197 SATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHVE-------NGDI 251 (554)
T ss_pred eccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhcccceec-------cCce
Confidence 5543 3446788999888653 3569999999998 4445665555443 5789
Q ss_pred EEEEEe--CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC--------CCCC------ccCHHHHHHhCCC
Q 013281 332 KVILAT--NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM--------TLAD------DVNLEEFVMTKDE 395 (446)
Q Consensus 332 ~vI~at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~--------~~~~------~~~l~~la~~t~g 395 (446)
.+|+|| |..-.|+.+|++ |+ +++.+.....+....||..-+..+ ++.. +--++.++..++|
T Consensus 252 ~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 252 TLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred EEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 999988 556678999999 87 477788888888888888744421 1111 1225677888887
Q ss_pred CcHHHHHHHHHHHHHHHHHhC---CCCccHHHHHHHHHH
Q 013281 396 FSGADIKAICTEAGLLALRER---RMKVTHTDFKKAKEK 431 (446)
Q Consensus 396 ~s~~di~~l~~~A~~~Al~~~---~~~It~~d~~~A~~~ 431 (446)
-.-+-+.+|-..+.+...+.+ +..++.+|+.+++..
T Consensus 329 DaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 329 DARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 544444444333333344433 457889999888765
No 91
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.3e-15 Score=161.60 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=144.2
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|++|+|.+.+++.|..++..- +.+..+||+||||||||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 456788999999999999999999999762 234579999999999999999999988652
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.+++.. ...-..++.+.+.+. .....||||||+|.+ +...+
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~ 136 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAF 136 (624)
T ss_pred cccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHH
Confidence 33333321 011223333322222 223569999999999 44455
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..|++ ....+++|++|+.+..+.+.+++ |+. .+.|+.++.++...+|+..+....+. ++..+..|+.
T Consensus 137 naLLk~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 137 NALLKTLEE-----PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred HHHHHHhhc-----cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555543 23578899999988888888887 884 78999999999999998877665543 3344677787
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
.+.| +.+++.+++..+. + .....|+.+++..+
T Consensus 209 ~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~ 240 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGV 240 (624)
T ss_pred HcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHH
Confidence 7775 6666666666442 2 23446777765544
No 92
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.68 E-value=1.2e-15 Score=163.66 Aligned_cols=220 Identities=20% Similarity=0.242 Sum_probs=147.8
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEechh
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFLRVVGSE 260 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~i~v~~s~ 260 (446)
+.|.|.++++++|..++...+. +..+...++|+|+||||||++++.|.+++ ...+++|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 5689999999999999876443 22233345799999999999999998765 15678999954
Q ss_pred hhhhh---------c-CC-------chHHHHHHHHHHhh--cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHH
Q 013281 261 LIQKY---------L-GD-------GPKLVRELFRVADD--LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ 321 (446)
Q Consensus 261 l~~~~---------~-g~-------~~~~v~~lf~~a~~--~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ 321 (446)
+...+ + +. ....+..+|..... ....||+|||||.|..+ .+..|+.|++.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~ 895 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDW 895 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHH
Confidence 33211 1 11 12345556655422 23469999999999532 24566666664
Q ss_pred hcCCCCCCCeEEEEEeCC---CCCCChhhcCCCceee-EEEcCCCCHHHHHHHHHHHHccCC-CCCccCHHHHHHhCCCC
Q 013281 322 LDGFDSRGDVKVILATNR---IESLDPALLRPGRIDR-KIEFPLPDIKTRRRIFQIHTSRMT-LADDVNLEEFVMTKDEF 396 (446)
Q Consensus 322 ld~~~~~~~v~vI~atn~---~~~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~~~~~~-~~~~~~l~~la~~t~g~ 396 (446)
.. .....+.||+++|. ++.+++.+.+ ||.. .+.|++|+.+++.+||+.++.... .-.+..++.+|......
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~ 971 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV 971 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Confidence 33 23457899999986 4567788877 6643 588999999999999999987542 22333456666633322
Q ss_pred --cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 013281 397 --SGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 397 --s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~ 436 (446)
..+..-.+|+.|+.. +....|+.+|+.+|+..+....
T Consensus 972 SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~sr 1010 (1164)
T PTZ00112 972 SGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDSP 1010 (1164)
T ss_pred CCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhhh
Confidence 334444567777654 3445899999999998775443
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.68 E-value=3.9e-15 Score=150.65 Aligned_cols=207 Identities=19% Similarity=0.270 Sum_probs=146.1
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
+.+++++.+|++++|.+.+++.+.+.+... ..+..+|||||||+|||++|+++++.+.+.
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456778899999999999999999988752 345679999999999999999999987432
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.+++.. ......++.+++.+... ...||+|||+|.+ +...+
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~~~~ 134 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SKSAF 134 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CHHHH
Confidence 33333321 12233456666665432 2359999999988 22333
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
.. ++..++. ...++++|++|+.++.+.+++.+ |+. .++|++|+.++...++..++...++. ++..+..++.
T Consensus 135 ~~---Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~ 206 (355)
T TIGR02397 135 NA---LLKTLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIAR 206 (355)
T ss_pred HH---HHHHHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44 4444443 24568888888888888888887 884 88999999999999999888766543 2344667777
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
.+.| +.+.+.+.+..+...+ . ..||.+|+.+++
T Consensus 207 ~~~g-~~~~a~~~lekl~~~~---~-~~it~~~v~~~~ 239 (355)
T TIGR02397 207 AADG-SLRDALSLLDQLISFG---N-GNITYEDVNELL 239 (355)
T ss_pred HcCC-ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 7765 6677777776655442 2 347877776554
No 94
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.67 E-value=2.8e-15 Score=145.77 Aligned_cols=192 Identities=25% Similarity=0.331 Sum_probs=129.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh------hhhhhcCCchHHHHH--------------------HHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE------LIQKYLGDGPKLVRE--------------------LFR 278 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~------l~~~~~g~~~~~v~~--------------------lf~ 278 (446)
..++||+||||||||++|+++|+.++.+|+.++|.. +++.+.+.....+.. .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 567999999999999999999999999999998753 333333222111111 111
Q ss_pred HHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc----CCC-------CCCCeEEEEEeCCCC-----C
Q 013281 279 VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GFD-------SRGDVKVILATNRIE-----S 342 (446)
Q Consensus 279 ~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~~~-------~~~~v~vI~atn~~~-----~ 342 (446)
.|.. .+.+|+|||++.+ +.+.+..|+.+|++-. +.. ...+++||+|+|... .
T Consensus 101 ~A~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 2222 3469999999998 6778888988886421 100 124688999999753 5
Q ss_pred CChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCcc--CHHHHHHhCC----CCcHHHHHHHHHHHHHHHHHhC
Q 013281 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV--NLEEFVMTKD----EFSGADIKAICTEAGLLALRER 416 (446)
Q Consensus 343 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~--~l~~la~~t~----g~s~~di~~l~~~A~~~Al~~~ 416 (446)
+++++++ || ..+.++.|+.++..+|+..+.. +.... .+-.++.... ....+ +++.+.-|...+....
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~ 241 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDI 241 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCC
Confidence 6889998 98 5899999999999999998752 22111 1112221111 11222 5555555555555566
Q ss_pred CCCccHHHHHHHHHHHHhh
Q 013281 417 RMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 417 ~~~It~~d~~~A~~~v~~~ 435 (446)
+..++.+||.+.+..|+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 242 PVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred CCCCCcHHHHHHHHHHhcc
Confidence 8899999999999988865
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.7e-15 Score=159.61 Aligned_cols=205 Identities=19% Similarity=0.174 Sum_probs=144.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---------- 252 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~---------- 252 (446)
+++.+.+|++|+|.+.+++.|+.++... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 6788899999999999999999999862 345568999999999999999999987642
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.++++.. .+-..++++.+.+.. ....|++|||+|.+ +...+
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~ 135 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGF 135 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHH
Confidence 222222110 122334444433322 23469999999999 44455
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l~~la~ 391 (446)
..|+..|++ ...++++|++|+.++.+.+.+++ |+ ..++|..++.++...++...+...+... +..+..++.
T Consensus 136 NALLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 136 NALLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555543 34688999999888899999988 86 4899999999999999988887766542 334566666
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
...| +.+++.+++..+...+ ....||.+++...
T Consensus 208 ~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 208 AGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 6665 7888888887654332 2345665555433
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.67 E-value=7.7e-15 Score=139.47 Aligned_cols=202 Identities=13% Similarity=0.186 Sum_probs=139.1
Q ss_pred CCCCCccccc--CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech
Q 013281 185 APLESYADIG--GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (446)
Q Consensus 185 ~~~~~~~di~--Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s 259 (446)
.+..+|+++. +.+.++..+++++.. .....+++|+||+|||||+||++++++. +..++.+++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3456777754 445666666666542 2345689999999999999999999975 5688888887
Q ss_pred hhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 260 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 260 ~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
.+... +. ......+|+|||+|.+ +...+..+..+++.... .+..++|++++.
T Consensus 80 ~~~~~------------~~--~~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~~---~~~~~vl~~~~~ 131 (227)
T PRK08903 80 SPLLA------------FD--FDPEAELYAVDDVERL-----------DDAQQIALFNLFNRVRA---HGQGALLVAGPA 131 (227)
T ss_pred HhHHH------------Hh--hcccCCEEEEeChhhc-----------CchHHHHHHHHHHHHHH---cCCcEEEEeCCC
Confidence 75432 11 1123579999999988 23346667777765432 334445555554
Q ss_pred CC---CCChhhcCCCce--eeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 013281 340 IE---SLDPALLRPGRI--DRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 340 ~~---~ld~al~r~gRf--~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al 413 (446)
+. .+.+.+.+ || ...+++++|+.+++..++..+.....+. ++..+..|+....| +.+++.++++.....|.
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 22 34567776 76 4689999999999999998876654443 23346777775554 89999999998766665
Q ss_pred HhCCCCccHHHHHHHHH
Q 013281 414 RERRMKVTHTDFKKAKE 430 (446)
Q Consensus 414 ~~~~~~It~~d~~~A~~ 430 (446)
..+ ..||...+.+++.
T Consensus 209 ~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 EQK-RPVTLPLLREMLA 224 (227)
T ss_pred HhC-CCCCHHHHHHHHh
Confidence 655 6799888887764
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.3e-15 Score=161.02 Aligned_cols=206 Identities=17% Similarity=0.236 Sum_probs=146.8
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-------- 251 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~-------- 251 (446)
.+.+++.+.+|++++|.+.+++.+..++... ..++++||+||+|||||++|+++|+.+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~ 72 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC 72 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 4677889999999999999999999988652 34567999999999999999999998753
Q ss_pred ----------------cEEEEechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHH
Q 013281 252 ----------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREI 311 (446)
Q Consensus 252 ----------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~ 311 (446)
.++.++++. ..+-..++.+...+... ...|++|||+|.+ +...
T Consensus 73 Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~A 135 (605)
T PRK05896 73 CNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STSA 135 (605)
T ss_pred CcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHHH
Confidence 122222211 11233456665544432 3469999999998 3445
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHH
Q 013281 312 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFV 390 (446)
Q Consensus 312 ~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la 390 (446)
+..|+..|++ ....+++|++|+.+..+.+++++ |+. .++|+.++..+...++...+...+.. ++..+..++
T Consensus 136 ~NaLLKtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 136 WNALLKTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHHHHHHHh-----CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5666666654 24578888899888999999988 885 89999999999999998887665432 334467777
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 013281 391 MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 391 ~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~ 427 (446)
..+.| +.+++.+++..+...+ + ..|+.+++..
T Consensus 208 ~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~e 239 (605)
T PRK05896 208 DLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINK 239 (605)
T ss_pred HHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHH
Confidence 77776 6777777777643332 2 2277665554
No 98
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.2e-15 Score=162.06 Aligned_cols=213 Identities=21% Similarity=0.271 Sum_probs=149.6
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE---E
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR---V 256 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~---v 256 (446)
.+.+++.+.+|++|+|.+.+++.|+.++... ..+..+|||||+|||||++|+++|+.+.+.-.. -
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~ 74 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE 74 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC
Confidence 4667889999999999999999999999862 345678999999999999999999987653110 0
Q ss_pred echhhh---hh---h---c---CCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHH
Q 013281 257 VGSELI---QK---Y---L---GDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (446)
Q Consensus 257 ~~s~l~---~~---~---~---g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (446)
.|.... +. + - ..+...++.+.+.+.. ....|++|||+|.+ ....+..|+..|+
T Consensus 75 pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKtLE 143 (725)
T PRK07133 75 PCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKTLE 143 (725)
T ss_pred chhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHHhh
Confidence 111100 00 0 0 0223446676666553 23469999999998 3344555555554
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCHHHHHHhCCCCcHH
Q 013281 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGA 399 (446)
Q Consensus 321 ~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l~~la~~t~g~s~~ 399 (446)
+ ....+++|++|+.++.+.+.+++ |+. .+.|..++.++...++...+...++.. +..+..++..+.| +.+
T Consensus 144 E-----PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR 214 (725)
T PRK07133 144 E-----PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLR 214 (725)
T ss_pred c-----CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 3 24578889999888999999988 885 899999999999999988776655442 3346778887776 777
Q ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 400 DIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 400 di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
++.+++..+...+ ...|+.+++..+
T Consensus 215 ~AlslLekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 215 DALSIAEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 7777777654432 233777666543
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.1e-15 Score=166.04 Aligned_cols=204 Identities=18% Similarity=0.153 Sum_probs=143.6
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|++|+|.+.+++.|+.++..- +.++.+||+||+|||||++|++||+.+.+.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 347889999999999999999999998762 345568999999999999999999988642
Q ss_pred ------------------EEEEechhhhhhhcCCchHHHHHHHHHH----hhcCCeEEEEcCcccccccccCCCCCCcHH
Q 013281 253 ------------------FLRVVGSELIQKYLGDGPKLVRELFRVA----DDLSPSIVFIDEIDAVGTKRYDAHSGGERE 310 (446)
Q Consensus 253 ------------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a----~~~~p~IL~IDEid~l~~~r~~~~~~~~~~ 310 (446)
|+.+++.. ...-..++.+...+ ......|+||||+|.| +.+
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~ 135 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQ 135 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHH
Confidence 22222211 01123344433322 2234579999999999 556
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCHHHH
Q 013281 311 IQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEF 389 (446)
Q Consensus 311 ~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l~~l 389 (446)
.++.|+.+|++. ...++||++|+.++.|.+.|++ |+ ..++|..++.++...+|...+...++.. +..+..|
T Consensus 136 a~NaLLK~LEEp-----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lL 207 (824)
T PRK07764 136 GFNALLKIVEEP-----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLV 207 (824)
T ss_pred HHHHHHHHHhCC-----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 667777776643 4578899999888888889988 88 4899999999999999998887665543 2335666
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 013281 390 VMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425 (446)
Q Consensus 390 a~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~ 425 (446)
+....| +.+++.+++......+ ....||.+++
T Consensus 208 a~~sgG-dlR~Al~eLEKLia~~---~~~~IT~e~V 239 (824)
T PRK07764 208 IRAGGG-SVRDSLSVLDQLLAGA---GPEGVTYERA 239 (824)
T ss_pred HHHcCC-CHHHHHHHHHHHHhhc---CCCCCCHHHH
Confidence 766665 7777777776544221 2334555543
No 100
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=2.8e-16 Score=161.09 Aligned_cols=212 Identities=22% Similarity=0.303 Sum_probs=147.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL 261 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l 261 (446)
....+|++|+|.+.++.++.+.+.. .+..+..|||+|++||||.++|++|++.+. -||+.+||..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 4457999999999999999998887 456788899999999999999999999875 49999999766
Q ss_pred hhh-------------hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC----
Q 013281 262 IQK-------------YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG---- 324 (446)
Q Consensus 262 ~~~-------------~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~---- 324 (446)
... |.|+....-..+|+.|.. +.||+|||..+ ...+|..|+++|++-.-
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----------CHHHHHHHHHHHhhceEEecC
Confidence 432 233333323457777765 89999999988 78899999999986431
Q ss_pred -CC-CCCCeEEEEEeCCCC--C-----CChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHH----ccCCCC----Cc
Q 013281 325 -FD-SRGDVKVILATNRIE--S-----LDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHT----SRMTLA----DD 383 (446)
Q Consensus 325 -~~-~~~~v~vI~atn~~~--~-----ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~----~~~~~~----~~ 383 (446)
.. ...+|+||+|||+.- + +-..|.= |+. ++.+..|...+|.+ +..+++ .+++.. .+
T Consensus 374 ~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~ 450 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSP 450 (560)
T ss_pred CCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCH
Confidence 11 124799999999831 1 2222222 332 77788888888866 222333 333322 22
Q ss_pred cCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 013281 384 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFK 426 (446)
Q Consensus 384 ~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~ 426 (446)
..+..|..+.+-.+.++|.+++.+|...+ .....|+.+|+.
T Consensus 451 ~a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 451 DALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 23455666655558899999999988633 333345555554
No 101
>PRK06893 DNA replication initiation factor; Validated
Probab=99.66 E-value=4.2e-15 Score=141.68 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=133.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE 260 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~ 260 (446)
-.+..+|++.+|.+... .+......+ .......++||||||||||+|++++|+++ +....++....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~----------~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNF----------IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHh----------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 44567888877554322 122221111 11123358999999999999999999985 33444554432
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC-C
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN-R 339 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn-~ 339 (446)
... ....++.... ...+|+|||++.+.. ....+..+..+++.+.. .+..++|+|+| .
T Consensus 78 ~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~---~~~~illits~~~ 135 (229)
T PRK06893 78 SQY--------FSPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE---QGKTLLLISADCS 135 (229)
T ss_pred hhh--------hhHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCCcEEEEeCCCC
Confidence 211 1112222222 347999999999842 23345567777776532 23344455554 4
Q ss_pred CCCCC---hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 340 IESLD---PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 340 ~~~ld---~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
+..++ +.+.++.++...+.++.|+.+++..|++..+....+. ++..++.|+....| +.+.+..++......++.+
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~ 214 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA 214 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc
Confidence 55443 7888844445789999999999999999887654443 33446778888776 7788888888765555544
Q ss_pred CCCCccHHHHHHHH
Q 013281 416 RRMKVTHTDFKKAK 429 (446)
Q Consensus 416 ~~~~It~~d~~~A~ 429 (446)
++ .||...+.+++
T Consensus 215 ~~-~it~~~v~~~L 227 (229)
T PRK06893 215 QR-KLTIPFVKEIL 227 (229)
T ss_pred CC-CCCHHHHHHHh
Confidence 44 69988887765
No 102
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=3.5e-15 Score=156.35 Aligned_cols=212 Identities=18% Similarity=0.227 Sum_probs=146.1
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------E
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------F 253 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------~ 253 (446)
+..++.+.+|++++|++.+++.|+.++..- ..+..+|||||+|+|||++|+++|+.+.+. +
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 566788899999999999999999999762 335568899999999999999999987631 1
Q ss_pred EE-Eechhhhhh----------hcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHH
Q 013281 254 LR-VVGSELIQK----------YLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLEL 318 (446)
Q Consensus 254 i~-v~~s~l~~~----------~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~l 318 (446)
-. .+|..+... ....+...++.+.+.+.. ....|++|||+|.+ +...+..|+..
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naLLk~ 142 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNALLKT 142 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHHHHH
Confidence 00 111111110 001122334555544432 23569999999988 33344555555
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCHHHHHHhCCCCc
Q 013281 319 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFS 397 (446)
Q Consensus 319 L~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l~~la~~t~g~s 397 (446)
|.. ....+++|++|+.++.+.+++.+ |+. .+.|+.|+.++...++..++...++.. +..+..|+..+.| +
T Consensus 143 LEe-----pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~ 213 (486)
T PRK14953 143 LEE-----PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-G 213 (486)
T ss_pred Hhc-----CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 442 24567788888888888888887 875 799999999999999999888766543 3346777777775 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 398 GADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 398 ~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
.+++.+++..+...+ ...||.+++..+
T Consensus 214 lr~al~~Ldkl~~~~----~~~It~~~V~~~ 240 (486)
T PRK14953 214 MRDAASLLDQASTYG----EGKVTIKVVEEF 240 (486)
T ss_pred HHHHHHHHHHHHHhc----CCCcCHHHHHHH
Confidence 778888887765432 345777777664
No 103
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.66 E-value=1.4e-15 Score=169.49 Aligned_cols=170 Identities=23% Similarity=0.333 Sum_probs=134.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcE
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~ 253 (446)
...+..+++++|.+..+.++.+.+.. ....+++|+||||||||++|+++|..+ +.++
T Consensus 171 ~~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~ 237 (857)
T PRK10865 171 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 237 (857)
T ss_pred HHhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEE
Confidence 45567889999999998888887766 234579999999999999999999987 6788
Q ss_pred EEEechhhh--hhhcCCchHHHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Q 013281 254 LRVVGSELI--QKYLGDGPKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (446)
Q Consensus 254 i~v~~s~l~--~~~~g~~~~~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 330 (446)
+.++.+.+. .+|.|+.+..++.+|..+.. ..++||||||+|.|.+.+.. .+..+.+..|...| .++.
T Consensus 238 ~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~~~~lkp~l-------~~g~ 307 (857)
T PRK10865 238 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPAL-------ARGE 307 (857)
T ss_pred EEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhHHHHhcchh-------hcCC
Confidence 888888876 46889999999999987543 46789999999999765422 22233444444333 3688
Q ss_pred eEEEEEeCCCC-----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC
Q 013281 331 VKVILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (446)
Q Consensus 331 v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~ 379 (446)
+.+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+.....
T Consensus 308 l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 308 LHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred CeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 99999998865 48999999 997 688999999999999987765543
No 104
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.65 E-value=7.9e-15 Score=138.91 Aligned_cols=202 Identities=19% Similarity=0.280 Sum_probs=138.9
Q ss_pred CCcccc--cCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh
Q 013281 188 ESYADI--GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI 262 (446)
Q Consensus 188 ~~~~di--~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~ 262 (446)
.+|++. .+....+..+++++.. ..+.+++|+||+|||||++|+++++.+ +.++++++|+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 345554 3567788888887642 236689999999999999999999876 4688999998876
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CC
Q 013281 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IE 341 (446)
Q Consensus 263 ~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~-~~ 341 (446)
... ..++.... .+.+|+|||+|.+.. ....+..+..+++.+.. .+ ..+|++++. +.
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~---~~-~~iIits~~~~~ 135 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVRE---AG-GRLLIAGRAAPA 135 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cC-CeEEEECCCChH
Confidence 432 22333222 246999999999832 11235667777765432 12 246666654 32
Q ss_pred CC---ChhhcCCCce--eeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 342 SL---DPALLRPGRI--DRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 342 ~l---d~al~r~gRf--~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
.+ .+.+.+ |+ ...+.+++|+.+++..+++.++....+. .+..+..|+.. .+.+.+++.++++.+...+...
T Consensus 136 ~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~ 212 (226)
T TIGR03420 136 QLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAA 212 (226)
T ss_pred HCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHh
Confidence 22 266766 65 4689999999999999999877654443 33346777776 4459999999999988766665
Q ss_pred CCCCccHHHHHHHH
Q 013281 416 RRMKVTHTDFKKAK 429 (446)
Q Consensus 416 ~~~~It~~d~~~A~ 429 (446)
+ ..|+.+.+.+.+
T Consensus 213 ~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 213 K-RKITIPFVKEVL 225 (226)
T ss_pred C-CCCCHHHHHHHh
Confidence 5 469888776654
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.9e-15 Score=150.95 Aligned_cols=210 Identities=17% Similarity=0.187 Sum_probs=144.0
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE------
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF------ 253 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~------ 253 (446)
.+.+++.+.+|++++|.+.+++.+...+... ..+.++|||||||+|||++|+++++.+.++.
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 73 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNE 73 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3677889999999999999999999999762 3456899999999999999999999875421
Q ss_pred ----EEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC
Q 013281 254 ----LRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF 325 (446)
Q Consensus 254 ----i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 325 (446)
..+... .........++.++..+.. ..+.||+|||+|.+. ...+..++ ..++.
T Consensus 74 ~~~~~~~~l~----~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll---~~le~- 134 (367)
T PRK14970 74 DFSFNIFELD----AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFL---KTLEE- 134 (367)
T ss_pred CCCcceEEec----cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHH---HHHhC-
Confidence 111111 0111223456666665532 234699999999882 22334444 43433
Q ss_pred CCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHH
Q 013281 326 DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAI 404 (446)
Q Consensus 326 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l 404 (446)
.....++|++|+....+.+++.+ |+. .++|+.|+.++...++...+...++. ++..++.|+..+.| +.+.+.+.
T Consensus 135 -~~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~ 209 (367)
T PRK14970 135 -PPAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSI 209 (367)
T ss_pred -CCCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHH
Confidence 23456777788878888889987 774 78999999999999998887766653 34457777877665 66666666
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 405 CTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 405 ~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
+.....++ ... ||.+++...+
T Consensus 210 lekl~~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 210 FDRVVTFC---GKN-ITRQAVTENL 230 (367)
T ss_pred HHHHHHhc---CCC-CCHHHHHHHh
Confidence 66554433 222 6666665443
No 106
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=5.9e-15 Score=155.00 Aligned_cols=205 Identities=18% Similarity=0.221 Sum_probs=148.7
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------- 251 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--------- 251 (446)
..+++.+.+|++|+|.+.+++.|+.++..- ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 356788899999999999999999999762 34567899999999999999999998742
Q ss_pred ---------------cEEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 252 ---------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 252 ---------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
.++.++++. ..+-..++++...+.. ....|++|||+|.+ +.+.+
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~ 134 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAF 134 (535)
T ss_pred cccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHH
Confidence 122222211 0123455665554322 12359999999999 55566
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..|++. ...+.+|++|+.+..+.+++++ |+ ..++|..++.++....+...+...++. .+..+..|+.
T Consensus 135 NALLK~LEEp-----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 135 NALLKTLEEP-----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred HHHHHHHhhc-----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666542 4568888888888999999988 87 489999999999999998887765544 3445777888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~ 427 (446)
...| +.+++.+++..|...+ ...||.+++..
T Consensus 207 ~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~ 237 (535)
T PRK08451 207 SGNG-SLRDTLTLLDQAIIYC----KNAITESKVAD 237 (535)
T ss_pred HcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHH
Confidence 7776 8888888888776554 23466655543
No 107
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3e-15 Score=160.24 Aligned_cols=206 Identities=18% Similarity=0.260 Sum_probs=148.6
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|++|+|.+.+++.|+.++... +.+..+|||||+|||||++|+++|+.+.+.
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c 73 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPC 73 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCC
Confidence 346788899999999999999999998762 346678999999999999999999987542
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.+++.. ..+-..++++...+... ...|++|||+|.+ +...+
T Consensus 74 ~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~ 136 (576)
T PRK14965 74 NVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAF 136 (576)
T ss_pred CccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHH
Confidence 33333221 11233456665554322 2359999999999 44455
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..|++ ...++++|++|+.++.+.+.+++ |+. .++|..++.++....+...+...++. ++..+..|+.
T Consensus 137 naLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 137 NALLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVAR 208 (576)
T ss_pred HHHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 666666653 24678999999999999999988 884 88999999999988888877766554 3445677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
.+.| +.+++.+++..+..+. + ..|+.+|+...
T Consensus 209 ~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 209 KGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 8776 7777777776554432 1 34776665443
No 108
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.65 E-value=4.7e-15 Score=165.21 Aligned_cols=202 Identities=24% Similarity=0.313 Sum_probs=150.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEE
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFL 254 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~i 254 (446)
+....++.++|.++.++++.+.+.. +...+++|+||||||||++|+++|... +..++
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~ 239 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI 239 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 4456788999999999999998876 245689999999999999999999976 36899
Q ss_pred EEechhhh--hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 255 RVVGSELI--QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 255 ~v~~s~l~--~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
.++.+.++ .+|.|+.+..++.+|..+....++||||||+|.|.+..... +.......|...|. ++.+.
T Consensus 240 ~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a~lLkp~l~-------rg~l~ 309 (821)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDAANILKPALA-------RGELQ 309 (821)
T ss_pred EeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccHHHHhHHHHh-------CCCcE
Confidence 99998887 47889999999999999988788999999999998654321 22233444443332 57899
Q ss_pred EEEEeCCCC-----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc----CCCC-CccCHHHHHHhCCCCc-----
Q 013281 333 VILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR----MTLA-DDVNLEEFVMTKDEFS----- 397 (446)
Q Consensus 333 vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~----~~~~-~~~~l~~la~~t~g~s----- 397 (446)
+|++|+..+ ..++++.+ ||. .|.++.|+.++...|++..... ..+. .+..+..++..+.+|.
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~l 386 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFL 386 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccC
Confidence 999998753 47899998 996 6899999999998888754321 2222 3334666666666554
Q ss_pred HHHHHHHHHHHHHHH
Q 013281 398 GADIKAICTEAGLLA 412 (446)
Q Consensus 398 ~~di~~l~~~A~~~A 412 (446)
|...-.++.+|+...
T Consensus 387 Pdkaidlld~a~a~~ 401 (821)
T CHL00095 387 PDKAIDLLDEAGSRV 401 (821)
T ss_pred chHHHHHHHHHHHHH
Confidence 344445666665543
No 109
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.65 E-value=2e-14 Score=137.51 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=137.0
Q ss_pred CCCCCccccc--CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEech
Q 013281 185 APLESYADIG--GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGS 259 (446)
Q Consensus 185 ~~~~~~~di~--Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s 259 (446)
.+..+|++.+ +...++..+..+...+ ...+++||||||||||+|++++++++. ..+.++...
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~~-------------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQE-------------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 3455677754 4556666677765442 234799999999999999999998754 345555555
Q ss_pred hhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 260 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 260 ~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
..... ...+++.... ..+|+|||++.+.. ....+..+..+++.+.. .++..+|+|++.
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~~ 140 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGDR 140 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCCC
Confidence 43221 1112222221 26899999999842 23455667777765421 344456666654
Q ss_pred -CCC---CChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 013281 340 -IES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 340 -~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~A 412 (446)
+.. +.|.|++ |+. ..+.+..|+.+++.++++.++....+. ++.-++.|+....+ +.+.+..++......+
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 333 5789988 874 689999999999999999866654443 33346788888876 8888888888865455
Q ss_pred HHhCCCCccHHHHHHHH
Q 013281 413 LRERRMKVTHTDFKKAK 429 (446)
Q Consensus 413 l~~~~~~It~~d~~~A~ 429 (446)
+..+ ..||.+.+.+++
T Consensus 218 l~~~-~~it~~~~k~~l 233 (235)
T PRK08084 218 ITAQ-RKLTIPFVKEIL 233 (235)
T ss_pred HhcC-CCCCHHHHHHHH
Confidence 5544 459988887765
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.64 E-value=5.2e-15 Score=165.37 Aligned_cols=202 Identities=21% Similarity=0.277 Sum_probs=147.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcE
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~ 253 (446)
...+..++.++|.+..+..+.+.+.. ....+++|+||||||||++|+++|..+ +.++
T Consensus 166 ~~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~ 232 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL 232 (852)
T ss_pred HhhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeE
Confidence 45567888999999998888887765 234578999999999999999999975 5678
Q ss_pred EEEechhhh--hhhcCCchHHHHHHHHHHhhc-CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Q 013281 254 LRVVGSELI--QKYLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (446)
Q Consensus 254 i~v~~s~l~--~~~~g~~~~~v~~lf~~a~~~-~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 330 (446)
+.++.+.+. .+|.|+.+..+..+|..+... .+.||||||||.|.+.+.. .+..+....|... ..++.
T Consensus 233 ~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~~d~~~~Lk~~-------l~~g~ 302 (852)
T TIGR03346 233 LALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGAMDAGNMLKPA-------LARGE 302 (852)
T ss_pred EEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cchhHHHHHhchh-------hhcCc
Confidence 888887776 468888899999999988653 5899999999999754321 1122233333222 23678
Q ss_pred eEEEEEeCCCC-----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCcc-----CHHHHHHhCCCCc---
Q 013281 331 VKVILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV-----NLEEFVMTKDEFS--- 397 (446)
Q Consensus 331 v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~-----~l~~la~~t~g~s--- 397 (446)
+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+.....+ .+...+..+..|.
T Consensus 303 i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r 379 (852)
T TIGR03346 303 LHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDR 379 (852)
T ss_pred eEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccccc
Confidence 99999998753 57999999 996 68999999999999999887665544332 3455555555443
Q ss_pred --HHHHHHHHHHHHHH
Q 013281 398 --GADIKAICTEAGLL 411 (446)
Q Consensus 398 --~~di~~l~~~A~~~ 411 (446)
|.---.++.+|+..
T Consensus 380 ~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 380 FLPDKAIDLIDEAAAR 395 (852)
T ss_pred CCchHHHHHHHHHHHH
Confidence 34444556665543
No 111
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.1e-14 Score=151.64 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=141.1
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|+||+|.+.++..|+.++... ..+..+|||||||+|||++|+++|+.+.+.
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP 74 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC
Confidence 356678899999999999999999999762 345679999999999999999999987432
Q ss_pred -----------------EEEEechhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHH
Q 013281 253 -----------------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREI 311 (446)
Q Consensus 253 -----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~ 311 (446)
++.+++... .+-..++.+.+... .....||+|||+|.+ ..+.
T Consensus 75 c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t~~~ 137 (451)
T PRK06305 75 CNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------TKEA 137 (451)
T ss_pred CcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------CHHH
Confidence 233332110 11123333332222 234679999999999 3444
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHH
Q 013281 312 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFV 390 (446)
Q Consensus 312 ~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la 390 (446)
+..|+..+++ ....+.+|++|+.+..+.+++++ |+. .++|+.++.++...++...+...+.. ++..+..|+
T Consensus 138 ~n~LLk~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 138 FNSLLKTLEE-----PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HHHHHHHhhc-----CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555543 24578888888888889899988 885 79999999999999998877765543 334577788
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 013281 391 MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 391 ~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~ 427 (446)
..+.| +.+++.+.+..+... .. ..|+.+++..
T Consensus 210 ~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~ 241 (451)
T PRK06305 210 RAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAK 241 (451)
T ss_pred HHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHH
Confidence 88775 566666665544322 11 3366665544
No 112
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.64 E-value=7.2e-15 Score=148.50 Aligned_cols=241 Identities=21% Similarity=0.307 Sum_probs=158.5
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhh-CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcC-Cc
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDI-GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLG-DG 269 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~-g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-~~~g-~~ 269 (446)
|+|++++++.+..++........+...+ .-.+|+++||+||||||||++|+++|..++.+|+.++++.+.. .|+| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 7999999999988887642222111111 1224689999999999999999999999999999999988764 6777 45
Q ss_pred hHHHHHHHHHH---------------------------------------------------------------------
Q 013281 270 PKLVRELFRVA--------------------------------------------------------------------- 280 (446)
Q Consensus 270 ~~~v~~lf~~a--------------------------------------------------------------------- 280 (446)
+..++.+|..|
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 56666665554
Q ss_pred ----------------------------------------------------------------------hhcCCeEEEE
Q 013281 281 ----------------------------------------------------------------------DDLSPSIVFI 290 (446)
Q Consensus 281 ----------------------------------------------------------------------~~~~p~IL~I 290 (446)
....-+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0113469999
Q ss_pred cCcccccccccCCC-CCCcHHHHHHHHHHHHHh-----cCCCCCCCeEEEEEeC----CCCCCChhhcCCCceeeEEEcC
Q 013281 291 DEIDAVGTKRYDAH-SGGEREIQRTMLELLNQL-----DGFDSRGDVKVILATN----RIESLDPALLRPGRIDRKIEFP 360 (446)
Q Consensus 291 DEid~l~~~r~~~~-~~~~~~~~~~l~~lL~~l-----d~~~~~~~v~vI~atn----~~~~ld~al~r~gRf~~~i~~~ 360 (446)
||||.++.+..+.. .-+...+|+.|+.+++-- .+...+.++.|||+.- .|.+|-|.|. |||+..+.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 99999997653222 223344788777776421 1122346799999873 3566777885 5999999999
Q ss_pred CCCHHHHHHHHH--------HHHc---cCCCC---CccCHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHHhC---
Q 013281 361 LPDIKTRRRIFQ--------IHTS---RMTLA---DDVNLEEFVMTK-------DEFSGADIKAICTEAGLLALRER--- 416 (446)
Q Consensus 361 ~P~~~er~~Il~--------~~~~---~~~~~---~~~~l~~la~~t-------~g~s~~di~~l~~~A~~~Al~~~--- 416 (446)
.++.++...||. .|.. ..++. .+..+..||... .+.-.+-|+.++.....-+.-+.
T Consensus 332 ~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~~ 411 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDL 411 (441)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCC
Confidence 999999999873 2221 11111 233355665543 33334556666666555444332
Q ss_pred ---CCCccHHHHHHHHHHHHhh
Q 013281 417 ---RMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 417 ---~~~It~~d~~~A~~~v~~~ 435 (446)
.-.|+.+.+...+..++.+
T Consensus 412 ~~~~v~I~~~~V~~~l~~~~~~ 433 (441)
T TIGR00390 412 SGQNITIDADYVSKKLGALVAD 433 (441)
T ss_pred CCCEEEECHHHHHhHHHHHHhc
Confidence 2357777777777766653
No 113
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=8.4e-15 Score=150.61 Aligned_cols=210 Identities=16% Similarity=0.184 Sum_probs=145.8
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--------- 252 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~--------- 252 (446)
.+++.+.+|++|+|.+.+++.|+.++... +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 46778899999999999999999988862 346679999999999999999999988652
Q ss_pred -----------------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCC
Q 013281 253 -----------------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHS 305 (446)
Q Consensus 253 -----------------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~ 305 (446)
|+.+++.. ......++++.+.+.. ....||||||+|.+
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l--------- 139 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML--------- 139 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC---------
Confidence 11111110 0113445555444421 12359999999999
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-Ccc
Q 013281 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDV 384 (446)
Q Consensus 306 ~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~ 384 (446)
+...+..|+..+++ ....+++|++|+....+.+++.+ |+. .++|..++.++...++...+...... ++.
T Consensus 140 --~~~~~~~LLk~LEe-----p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~ 209 (397)
T PRK14955 140 --SIAAFNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD 209 (397)
T ss_pred --CHHHHHHHHHHHhc-----CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 33344455555442 23467777777777788888877 775 79999999999998888887665543 344
Q ss_pred CHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-hCCCCccHHHHHHHH
Q 013281 385 NLEEFVMTKDEFSGADIKAICTEAGLLALR-ERRMKVTHTDFKKAK 429 (446)
Q Consensus 385 ~l~~la~~t~g~s~~di~~l~~~A~~~Al~-~~~~~It~~d~~~A~ 429 (446)
.++.|+..+.| +.+.+.+.+..+..++.. .....|+.+++.+.+
T Consensus 210 al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 210 ALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 56778887776 777777777776655432 234578877776543
No 114
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=5.3e-15 Score=151.00 Aligned_cols=184 Identities=18% Similarity=0.280 Sum_probs=127.6
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--------------- 252 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~--------------- 252 (446)
..|++|+|++.+++.|+.++..+... +..++...+.++||+||||+|||++|+++|+.+.+.
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 35889999999999999999875432 222344467889999999999999999999976542
Q ss_pred --------EEEEechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHH
Q 013281 253 --------FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (446)
Q Consensus 253 --------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (446)
+..+.... ....-..++.+++.+... ...|+||||+|.+ +...+..|+..|+
T Consensus 79 ~~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhh
Confidence 11111110 112234567777766542 3459999999999 4455566666654
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHH
Q 013281 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (446)
Q Consensus 321 ~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~d 400 (446)
+ ...++++|++|+.++.+.|.+++ |+ ..+.|+.|+.++...++.... ... ......++..+.|..+..
T Consensus 143 e-----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 143 E-----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRA 210 (394)
T ss_pred c-----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHH
Confidence 3 24456677777778999999998 88 599999999999887776322 222 334567788888866544
Q ss_pred HH
Q 013281 401 IK 402 (446)
Q Consensus 401 i~ 402 (446)
+.
T Consensus 211 ~~ 212 (394)
T PRK07940 211 RR 212 (394)
T ss_pred HH
Confidence 33
No 115
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1e-14 Score=155.23 Aligned_cols=206 Identities=17% Similarity=0.243 Sum_probs=145.4
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
...++.+.+|++|+|++.+++.|+.++... ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC 73 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC 73 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC
Confidence 346778899999999999999999999762 345679999999999999999999987642
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.+++.. ...-..++++.+.+. .....|++|||+|.+ +...+
T Consensus 74 ~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~ 136 (563)
T PRK06647 74 GECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAF 136 (563)
T ss_pred ccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHH
Confidence 22222110 012234455543332 234569999999999 33344
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..| |..++. ....+++|++|+.+..+.+++++ |+. .++|..++.++...+++..+...++. ++..+..|+.
T Consensus 137 naL---LK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~ 208 (563)
T PRK06647 137 NAL---LKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAY 208 (563)
T ss_pred HHH---HHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444 444442 35678899998888889999988 885 78999999999999998887665544 3445677887
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
...| +.+++.+++..+...+ ...|+.+++..+
T Consensus 209 ~s~G-dlR~alslLdklis~~----~~~It~e~V~~l 240 (563)
T PRK06647 209 KSTG-SVRDAYTLFDQVVSFS----DSDITLEQIRSK 240 (563)
T ss_pred HcCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHH
Confidence 7776 7788888887654432 234776665553
No 116
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=2e-14 Score=149.42 Aligned_cols=220 Identities=15% Similarity=0.219 Sum_probs=143.2
Q ss_pred CCCCCccccc-CcHH--HHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEE
Q 013281 185 APLESYADIG-GLDA--QIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRV 256 (446)
Q Consensus 185 ~~~~~~~di~-Gl~~--~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i~v 256 (446)
.+..+|++.+ |-+. +...+.+....| + ...+++||||||||||+|++++++++ +..++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~----------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP----------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3556787754 5433 233344444332 1 13469999999999999999999975 4578899
Q ss_pred echhhhhhhcCCch-HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 013281 257 VGSELIQKYLGDGP-KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL 335 (446)
Q Consensus 257 ~~s~l~~~~~g~~~-~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~ 335 (446)
++.++...+..... ..+. -|.......+.+|+|||++.+..+ ...+..+..+++.+.. .+. .+|+
T Consensus 167 ~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~---------~~~q~elf~~~n~l~~---~~k-~iIi 232 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGK---------TGVQTELFHTFNELHD---SGK-QIVI 232 (440)
T ss_pred EHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCc---------HHHHHHHHHHHHHHHH---cCC-eEEE
Confidence 99887765532211 1112 233222335789999999988432 2244556666655432 233 3555
Q ss_pred Ee-CCCCC---CChhhcCCCce--eeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHH
Q 013281 336 AT-NRIES---LDPALLRPGRI--DRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEA 408 (446)
Q Consensus 336 at-n~~~~---ld~al~r~gRf--~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A 408 (446)
++ +.+.. +.+.+.+ || ...+.+.+|+.++|..|++..+....+. ++..++.|+....+ +.++|..++...
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 55 44443 4567777 76 3588999999999999999988654433 23347778887776 788888888877
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHh
Q 013281 409 GLLALRERRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 409 ~~~Al~~~~~~It~~d~~~A~~~v~~ 434 (446)
...|...+ ..||.+...+++..++.
T Consensus 310 ~~~~~~~~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 310 LVYKETTG-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHHhc
Confidence 66665544 45888888888776643
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.1e-14 Score=153.50 Aligned_cols=213 Identities=17% Similarity=0.180 Sum_probs=152.0
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe---
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV--- 257 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~--- 257 (446)
..+++.+.+|++|+|.+.+++.|..++..- +.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 566788899999999999999999998762 44678999999999999999999998865321111
Q ss_pred ----------chhhhhhh----------cCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHHH
Q 013281 258 ----------GSELIQKY----------LGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (446)
Q Consensus 258 ----------~s~l~~~~----------~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~ 313 (446)
|..+.... ...+-..++.+.+.+... ...||+|||+|.+ +...+.
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a~n 150 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAAFN 150 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHHHH
Confidence 11111100 011234566666665432 3569999999999 344455
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCc-cCHHHHHHh
Q 013281 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVMT 392 (446)
Q Consensus 314 ~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-~~l~~la~~ 392 (446)
.|+..|++ ....+++|++|+..+.+.+.+++ |+. .+.|..++.++...++...+...+...+ ..+..|+..
T Consensus 151 aLLKtLEe-----Pp~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~ 222 (598)
T PRK09111 151 ALLKTLEE-----PPPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA 222 (598)
T ss_pred HHHHHHHh-----CCCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555543 24568888889888888888887 884 8999999999999999988876655433 446677777
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 393 KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 393 t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
+.| +.+++.+++..+... ....||.+++...+
T Consensus 223 a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred cCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 776 788888888765433 23468888777654
No 118
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.62 E-value=1.6e-14 Score=148.29 Aligned_cols=221 Identities=21% Similarity=0.260 Sum_probs=139.2
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhh---hCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcCC
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYED---IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGD 268 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~---~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-~~~g~ 268 (446)
|+|++.+++.+..++..++..-..... -...+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 799999999998877543221100000 01123468999999999999999999999999999999988764 57776
Q ss_pred chH-HHHHHHHHH----hhcCCeEEEEcCcccccccccCCC---CCCcHHHHHHHHHHHHHhc------C--CCCCCCeE
Q 013281 269 GPK-LVRELFRVA----DDLSPSIVFIDEIDAVGTKRYDAH---SGGEREIQRTMLELLNQLD------G--FDSRGDVK 332 (446)
Q Consensus 269 ~~~-~v~~lf~~a----~~~~p~IL~IDEid~l~~~r~~~~---~~~~~~~~~~l~~lL~~ld------~--~~~~~~v~ 332 (446)
... .+..++..+ ....++||||||||.+..+..+.. .-+...+|+.|+++|+.-. + .....+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 433 334444332 234679999999999976632211 1123468888998885210 0 01112344
Q ss_pred EEEEeCCCC----------------------------------------------------CCChhhcCCCceeeEEEcC
Q 013281 333 VILATNRIE----------------------------------------------------SLDPALLRPGRIDRKIEFP 360 (446)
Q Consensus 333 vI~atn~~~----------------------------------------------------~ld~al~r~gRf~~~i~~~ 360 (446)
+|+|+|-.. -+.|+++. |++.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 444444300 03455554 999999999
Q ss_pred CCCHHHHHHHHHH----HHc-------cCCCC---CccCHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHh
Q 013281 361 LPDIKTRRRIFQI----HTS-------RMTLA---DDVNLEEFVMT--KDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 361 ~P~~~er~~Il~~----~~~-------~~~~~---~~~~l~~la~~--t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
..+.++..+|+.. .+. ...+. .+..++.|+.. ..++-.+.|+.+++....-.+.+
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 9999999999873 222 11221 22335667765 34455677887777766655543
No 119
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.62 E-value=4.8e-14 Score=152.03 Aligned_cols=219 Identities=23% Similarity=0.319 Sum_probs=146.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEE
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFL 254 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~i 254 (446)
..+.+|++|+|.+..++.+...+..+ .+.+++|+||||||||++|+++++.. +.+|+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 45689999999999999988777542 24579999999999999999998765 35799
Q ss_pred EEechhhh-------hhhcCCchHHH----HHHHHH----------HhhcCCeEEEEcCcccccccccCCCCCCcHHHHH
Q 013281 255 RVVGSELI-------QKYLGDGPKLV----RELFRV----------ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (446)
Q Consensus 255 ~v~~s~l~-------~~~~g~~~~~v----~~lf~~----------a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~ 313 (446)
.++|..+. ...++...... +..+.. ......++|||||++.| +...|.
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQN 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHH
Confidence 99987652 11122211100 000100 01223479999999998 677888
Q ss_pred HHHHHHHHhcC------C---------------C--CCCCeEEEEEe-CCCCCCChhhcCCCceeeEEEcCCCCHHHHHH
Q 013281 314 TMLELLNQLDG------F---------------D--SRGDVKVILAT-NRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (446)
Q Consensus 314 ~l~~lL~~ld~------~---------------~--~~~~v~vI~at-n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~ 369 (446)
.|+.+++.-.. + . ...++++|++| +.++.+++++++ ||. .+.|++++.++...
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 88888865210 0 0 12246666655 557789999987 986 67899999999999
Q ss_pred HHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHH
Q 013281 370 IFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE--------RRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 370 Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~--------~~~~It~~d~~~A~~~v 432 (446)
|++..+...... .+..++.|+..+. .++...+++..+...++.+ ....|+.+|+.+++..-
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 999988765432 2333556666554 4455445555554443222 22369999999988754
No 120
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.61 E-value=1.1e-14 Score=147.40 Aligned_cols=241 Identities=20% Similarity=0.286 Sum_probs=157.2
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcC-Cc
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIG-IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLG-DG 269 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g-~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-~~~g-~~ 269 (446)
|+|++++++.+..++........+..... -..|.++||+||||||||++|+++|..++.+|+.++++++.. .|+| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 79999999999988865322211111111 013578999999999999999999999999999999998885 6877 44
Q ss_pred hHHHHHHHHHHh--------------------------------------------------------------------
Q 013281 270 PKLVRELFRVAD-------------------------------------------------------------------- 281 (446)
Q Consensus 270 ~~~v~~lf~~a~-------------------------------------------------------------------- 281 (446)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 566666666550
Q ss_pred ----------------------------------------------------------------------hcCCeEEEEc
Q 013281 282 ----------------------------------------------------------------------DLSPSIVFID 291 (446)
Q Consensus 282 ----------------------------------------------------------------------~~~p~IL~ID 291 (446)
...-+|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0134699999
Q ss_pred CcccccccccCC-CCCCcHHHHHHHHHHHHHh-----cCCCCCCCeEEEEEe----CCCCCCChhhcCCCceeeEEEcCC
Q 013281 292 EIDAVGTKRYDA-HSGGEREIQRTMLELLNQL-----DGFDSRGDVKVILAT----NRIESLDPALLRPGRIDRKIEFPL 361 (446)
Q Consensus 292 Eid~l~~~r~~~-~~~~~~~~~~~l~~lL~~l-----d~~~~~~~v~vI~at----n~~~~ld~al~r~gRf~~~i~~~~ 361 (446)
|||.|+.+..+. ..-+...+|+.|+.+++-- .+.-.+.++.|||+. ..+.+|-|.|.- ||+..+.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCC
Confidence 999999764322 1223345788777776421 012234679999886 346667788865 9999999999
Q ss_pred CCHHHHHHHHH--------HHHccC---CCC---CccCHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHHhC----
Q 013281 362 PDIKTRRRIFQ--------IHTSRM---TLA---DDVNLEEFVMTK-------DEFSGADIKAICTEAGLLALRER---- 416 (446)
Q Consensus 362 P~~~er~~Il~--------~~~~~~---~~~---~~~~l~~la~~t-------~g~s~~di~~l~~~A~~~Al~~~---- 416 (446)
++.++...||. .|..-+ ++. .+..+..||... .+.-.+-|+.++......+.-+.
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~~~ 414 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDMS 414 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCCCC
Confidence 99999999883 221111 111 233355565543 23334556666666655544321
Q ss_pred --CCCccHHHHHHHHHHHHhh
Q 013281 417 --RMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 417 --~~~It~~d~~~A~~~v~~~ 435 (446)
.-.|+.+-+...+..++..
T Consensus 415 ~~~v~I~~~~V~~~l~~l~~~ 435 (443)
T PRK05201 415 GETVTIDAAYVDEKLGDLVKD 435 (443)
T ss_pred CCEEEECHHHHHHHHHHHHhc
Confidence 1246666666666666543
No 121
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.60 E-value=1.3e-14 Score=144.96 Aligned_cols=222 Identities=20% Similarity=0.284 Sum_probs=143.7
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------C--cEEEE
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-------A--TFLRV 256 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~-------~--~~i~v 256 (446)
.+..|++|+|++.+++.+.-++..+ | ..++||+|+||||||++|+++++.+. + .+..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~----------~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP----------G---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc----------C---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4578999999999999887654321 1 24799999999999999999999873 2 22211
Q ss_pred ech---------hhhhh---------------hcCC---------chH-HHHHHHHHHhhcCCeEEEEcCcccccccccC
Q 013281 257 VGS---------ELIQK---------------YLGD---------GPK-LVRELFRVADDLSPSIVFIDEIDAVGTKRYD 302 (446)
Q Consensus 257 ~~s---------~l~~~---------------~~g~---------~~~-~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~ 302 (446)
.+. .+... .+|. +.. .....+.. ...++|||||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~---A~~GiL~lDEInrl------ 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLAR---ANRGYLYIDEVNLL------ 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEE---cCCCeEEecChHhC------
Confidence 110 00000 1110 000 00011111 12369999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCCC-CCChhhcCCCceeeEEEcCCCCH-HHHHHHHH
Q 013281 303 AHSGGEREIQRTMLELLNQL------DGF--DSRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLPDI-KTRRRIFQ 372 (446)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~~l------d~~--~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P~~-~er~~Il~ 372 (446)
+...|..|++.+++- +|. ....++++|+++|..+ .++++++. ||...+.++.|.. +++.+|+.
T Consensus 141 -----~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 141 -----EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred -----CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 677889999988743 221 1234688888888754 58899998 9999999998866 88899998
Q ss_pred HHHccCC----C------CCccC-----------------------HHHHHHhCC-CCcHHHHHHHHHHHHHHHHHhCCC
Q 013281 373 IHTSRMT----L------ADDVN-----------------------LEEFVMTKD-EFSGADIKAICTEAGLLALRERRM 418 (446)
Q Consensus 373 ~~~~~~~----~------~~~~~-----------------------l~~la~~t~-g~s~~di~~l~~~A~~~Al~~~~~ 418 (446)
....... + ..... +..++..+. .-.-++|. +++.|...|+.+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCC
Confidence 7532110 0 00000 122233322 12334555 889999999999999
Q ss_pred CccHHHHHHHHHHHHhhhc
Q 013281 419 KVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 419 ~It~~d~~~A~~~v~~~~~ 437 (446)
.|+.+|+..+..-++.+.-
T Consensus 293 ~V~~~Di~~~~~~vl~hR~ 311 (334)
T PRK13407 293 AVGRSHLRSVATMALSHRL 311 (334)
T ss_pred eeCHHHHHHHHHHhhhhhc
Confidence 9999999988877776544
No 122
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.60 E-value=2.4e-14 Score=156.66 Aligned_cols=163 Identities=21% Similarity=0.346 Sum_probs=120.9
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCC----CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-----
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGI----KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ----- 263 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~----- 263 (446)
|+|++++++.|.++|..... |+ +|..++||+||||||||++|+++|..++.+|++++++++..
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~--------gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRA--------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhc--------cccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHH
Confidence 79999999999999875311 22 23346999999999999999999999999999999988743
Q ss_pred hhcCCchHHH-----HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC------CCCCeE
Q 013281 264 KYLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRGDVK 332 (446)
Q Consensus 264 ~~~g~~~~~v-----~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~~~~v~ 332 (446)
..+|..+..+ ..+.+..+.+..+||||||||.+ +.+++..|+++|+.-.-.+ .-.+++
T Consensus 532 ~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred HHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 3344322111 12333344455689999999999 6778899999887421111 114788
Q ss_pred EEEEeCCC-------------------------CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHc
Q 013281 333 VILATNRI-------------------------ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (446)
Q Consensus 333 vI~atn~~-------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~ 376 (446)
||+|||.- ..+.|.++. |++.+|.|++.+.++...|+..++.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999932 125677877 9999999999999999999887654
No 123
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=8.1e-14 Score=147.51 Aligned_cols=220 Identities=18% Similarity=0.248 Sum_probs=147.4
Q ss_pred CCCCccccc-CcHHH--HHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 013281 186 PLESYADIG-GLDAQ--IQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVV 257 (446)
Q Consensus 186 ~~~~~~di~-Gl~~~--i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i~v~ 257 (446)
+..+|++++ |-+.. ...+...++.+ + .....++|||++|||||+|+++|++++ +..+++++
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~~----------~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEAP----------A-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhCc----------c-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 456777754 44432 33444444432 1 112349999999999999999999976 46889999
Q ss_pred chhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 258 GSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 258 ~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
+.++...+...........|.... ..+.+|+||||+.+..+ ...+..|+.+++.+.. . +..||+|+
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk---------e~tqeeLF~l~N~l~e---~-gk~IIITS 417 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK---------ESTQEEFFHTFNTLHN---A-NKQIVLSS 417 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC---------HHHHHHHHHHHHHHHh---c-CCCEEEec
Confidence 998887664332222222343322 24689999999998532 2345667777776642 1 23356677
Q ss_pred CCC----CCCChhhcCCCce--eeEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 013281 338 NRI----ESLDPALLRPGRI--DRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGADIKAICTEAGL 410 (446)
Q Consensus 338 n~~----~~ld~al~r~gRf--~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l~~la~~t~g~s~~di~~l~~~A~~ 410 (446)
|.+ ..+++.|.+ || ...+.+..|+.+.|..||+.++....+.- +.-++.|+....+ +.+.|..++.....
T Consensus 418 d~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a 494 (617)
T PRK14086 418 DRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTA 494 (617)
T ss_pred CCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 663 357888988 77 55889999999999999999987665542 3346677777664 78888888887766
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHh
Q 013281 411 LALRERRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 411 ~Al~~~~~~It~~d~~~A~~~v~~ 434 (446)
.|...+ ..||.+.+..+++.++.
T Consensus 495 ~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 495 FASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHhhC-CCCCHHHHHHHHHHhhc
Confidence 665544 44777777777766544
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=6.5e-14 Score=150.03 Aligned_cols=216 Identities=15% Similarity=0.204 Sum_probs=144.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE-------
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFL------- 254 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i------- 254 (446)
.+++.+.+|++|+|.+.+++.|+.++... +.+..+||+||+|||||++|+++|+.+.+.-.
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 45778899999999999999999988762 44667999999999999999999998866210
Q ss_pred E---Ee------chhhhh-------hhcC---CchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHH
Q 013281 255 R---VV------GSELIQ-------KYLG---DGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREI 311 (446)
Q Consensus 255 ~---v~------~s~l~~-------~~~g---~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~ 311 (446)
. -. |..+.. .+.+ .+...++.+.+.+. .....|++|||+|.+ +...
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------t~~a 143 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------STAA 143 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------CHHH
Confidence 0 00 001100 0011 11344555554442 123469999999999 3334
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHH
Q 013281 312 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFV 390 (446)
Q Consensus 312 ~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la 390 (446)
+..|+..|++ ....+++|++|+....+.+.+.+ |+ ..++|..++.++...++...+...+.. ++..++.|+
T Consensus 144 ~naLLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 144 FNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4555555543 23467778888777888888887 77 489999999999888888877665543 344577788
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHH-hCCCCccHHHHHHHH
Q 013281 391 MTKDEFSGADIKAICTEAGLLALR-ERRMKVTHTDFKKAK 429 (446)
Q Consensus 391 ~~t~g~s~~di~~l~~~A~~~Al~-~~~~~It~~d~~~A~ 429 (446)
..+.| +.+++.+.+.....++.. .....|+.+++.+.+
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 88776 666666666654444311 224457776665543
No 125
>PRK08727 hypothetical protein; Validated
Probab=99.60 E-value=1.5e-13 Score=131.23 Aligned_cols=206 Identities=17% Similarity=0.287 Sum_probs=134.1
Q ss_pred CCCCcccc-cCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 013281 186 PLESYADI-GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (446)
Q Consensus 186 ~~~~~~di-~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l 261 (446)
+..+|++. +|.+.....+...... .....++|+||+|||||+|++++++++ +....+++..++
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~~~~~-------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQALAAG-------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CcCChhhccCCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 44566664 4555555544433221 123459999999999999999998764 456666666554
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-C
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-I 340 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~-~ 340 (446)
... +...+.... ...+|+|||++.+... ...+..++.+++.... .+..+|+|+|. +
T Consensus 81 ~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~---------~~~~~~lf~l~n~~~~----~~~~vI~ts~~~p 137 (233)
T PRK08727 81 AGR--------LRDALEALE--GRSLVALDGLESIAGQ---------REDEVALFDFHNRARA----AGITLLYTARQMP 137 (233)
T ss_pred hhh--------HHHHHHHHh--cCCEEEEeCcccccCC---------hHHHHHHHHHHHHHHH----cCCeEEEECCCCh
Confidence 322 223333332 3469999999988432 2345667777776532 23457777764 4
Q ss_pred CC---CChhhcCCCce--eeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 013281 341 ES---LDPALLRPGRI--DRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 414 (446)
Q Consensus 341 ~~---ld~al~r~gRf--~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~ 414 (446)
.. +++++.+ || ...+.++.|+.+++..|++.++....+. ++..++.|+..+.| +.+.+.++++.....+..
T Consensus 138 ~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 138 DGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLA 214 (233)
T ss_pred hhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 43 4688988 86 4689999999999999999876544433 33346778888775 556666667766655655
Q ss_pred hCCCCccHHHHHHHHHH
Q 013281 415 ERRMKVTHTDFKKAKEK 431 (446)
Q Consensus 415 ~~~~~It~~d~~~A~~~ 431 (446)
.++ .||...+.+.+..
T Consensus 215 ~~~-~it~~~~~~~l~~ 230 (233)
T PRK08727 215 AKR-RVTVPFLRRVLEE 230 (233)
T ss_pred hCC-CCCHHHHHHHHhh
Confidence 544 6998888877643
No 126
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=9.7e-14 Score=144.12 Aligned_cols=226 Identities=15% Similarity=0.213 Sum_probs=141.9
Q ss_pred CCCCCccccc-CcHHH--HHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 185 APLESYADIG-GLDAQ--IQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 185 ~~~~~~~di~-Gl~~~--i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
.|..+|++.+ |-+.. ...++++...+-.. .-....+++||||+|+|||+|++++++++ +..++++++
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~-------~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQG-------KGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccccc-------cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 3556777754 54443 34455544332100 01123569999999999999999999975 578889988
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
..+...+...........|.... ..+.+|+|||++.+..+ ...+..+..+++.+.. .+. .+|++++
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k---------~~~qeelf~l~N~l~~---~~k-~IIlts~ 243 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK---------GATQEEFFHTFNSLHT---EGK-LIVISST 243 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC---------hhhHHHHHHHHHHHHH---CCC-cEEEecC
Confidence 87765443221111112343332 24579999999998432 2345666666665421 223 4666665
Q ss_pred C-C---CCCChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCCCC-ccCHHHHHHhCCCCcHHHHHHHHHHHHH-
Q 013281 339 R-I---ESLDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGADIKAICTEAGL- 410 (446)
Q Consensus 339 ~-~---~~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~~-~~~l~~la~~t~g~s~~di~~l~~~A~~- 410 (446)
. + ..+++.+.+ ||. ..+.++.|+.+++..|++..+....+.- +..++.|+....+ +.+.+...+...+.
T Consensus 244 ~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 244 CAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 4 3 346788888 884 7899999999999999999887765442 3335567776664 56666665555431
Q ss_pred HHHHh-CCCCccHHHHHHHHHHHHh
Q 013281 411 LALRE-RRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 411 ~Al~~-~~~~It~~d~~~A~~~v~~ 434 (446)
.|... ....||.+++..++..++.
T Consensus 321 ~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 321 VAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 23322 2245888888888887654
No 127
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.7e-14 Score=142.17 Aligned_cols=217 Identities=24% Similarity=0.328 Sum_probs=151.6
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----EEEEechhhhhhh--
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-----FLRVVGSELIQKY-- 265 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-----~i~v~~s~l~~~~-- 265 (446)
+.+.++++.++..++...+.. ..|.++++||+||||||.+++.+++++... +++|||..+.+.|
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 789999999999987765443 345579999999999999999999987543 8999997654322
Q ss_pred -------------cCCch-HHHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Q 013281 266 -------------LGDGP-KLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (446)
Q Consensus 266 -------------~g~~~-~~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 330 (446)
.|... .....+++.... ...-||++||+|.|..+. +..|..|+...... ...
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-----------~~~LY~L~r~~~~~--~~~ 156 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-----------GEVLYSLLRAPGEN--KVK 156 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-----------chHHHHHHhhcccc--cee
Confidence 11111 112222222222 245699999999996442 15677777655443 456
Q ss_pred eEEEEEeCCC---CCCChhhcCCCce-eeEEEcCCCCHHHHHHHHHHHHccCCCC---CccCHHHHH---HhCCCCcHHH
Q 013281 331 VKVILATNRI---ESLDPALLRPGRI-DRKIEFPLPDIKTRRRIFQIHTSRMTLA---DDVNLEEFV---MTKDEFSGAD 400 (446)
Q Consensus 331 v~vI~atn~~---~~ld~al~r~gRf-~~~i~~~~P~~~er~~Il~~~~~~~~~~---~~~~l~~la---~~t~g~s~~d 400 (446)
|.+|+.+|.. +.+++.+.+ ++ ...|.||+++.+|...|+.......-.. .+.-++.+| ....| ..+-
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 8889999875 468888877 44 3469999999999999999887642111 122233333 33333 5566
Q ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 013281 401 IKAICTEAGLLALRERRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 401 i~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~ 434 (446)
...+|+.|+..|-+++...|+.++..+|...+-.
T Consensus 234 aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 234 AIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 6688999999999999999999999999555433
No 128
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.59 E-value=4e-14 Score=141.72 Aligned_cols=229 Identities=20% Similarity=0.230 Sum_probs=152.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEE-
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-------ATFLR- 255 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~-------~~~i~- 255 (446)
..+...|++|+|+++.+..|.-.+..| ...+|||+|++|||||++|++++..+. .+|..
T Consensus 10 ~~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~ 76 (350)
T CHL00081 10 ERPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSH 76 (350)
T ss_pred cCCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCC
Confidence 356678999999999999998887765 235899999999999999999988653 22320
Q ss_pred -----Eechhhhhhh-------------------cCCchHHH------HHHHHHHh---------hcCCeEEEEcCcccc
Q 013281 256 -----VVGSELIQKY-------------------LGDGPKLV------RELFRVAD---------DLSPSIVFIDEIDAV 296 (446)
Q Consensus 256 -----v~~s~l~~~~-------------------~g~~~~~v------~~lf~~a~---------~~~p~IL~IDEid~l 296 (446)
..++.+.... .+.++..+ ...|.... ....++|||||++.+
T Consensus 77 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 77 PSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred CCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 0000111000 11111111 11111110 112479999999999
Q ss_pred cccccCCCCCCcHHHHHHHHHHHHHh------cCCC--CCCCeEEEEEeCCCC-CCChhhcCCCceeeEEEcCCCC-HHH
Q 013281 297 GTKRYDAHSGGEREIQRTMLELLNQL------DGFD--SRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLPD-IKT 366 (446)
Q Consensus 297 ~~~r~~~~~~~~~~~~~~l~~lL~~l------d~~~--~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P~-~~e 366 (446)
+...|..|++.+.+- +|.. ...++++|++.|..+ .+.++++. ||...+.+..|+ .+.
T Consensus 157 -----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 157 -----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred -----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 677899999988652 1211 234678888888755 68999998 999999999997 588
Q ss_pred HHHHHHHHHccC--CCC--------CccC-----------------------HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 013281 367 RRRIFQIHTSRM--TLA--------DDVN-----------------------LEEFVMTKDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 367 r~~Il~~~~~~~--~~~--------~~~~-----------------------l~~la~~t~g~s~~di~~l~~~A~~~Al 413 (446)
+.+|++...... ... .... +..++..+.--+++--..+++.|..+|.
T Consensus 224 e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aa 303 (350)
T CHL00081 224 RVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAA 303 (350)
T ss_pred HHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHH
Confidence 999998753211 000 0001 1233333333356666677888899999
Q ss_pred HhCCCCccHHHHHHHHHHHHhhhcc
Q 013281 414 RERRMKVTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 414 ~~~~~~It~~d~~~A~~~v~~~~~~ 438 (446)
.+++..|+.+|+..+..-++.+...
T Consensus 304 l~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 304 FEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999887654
No 129
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.58 E-value=1.7e-13 Score=133.57 Aligned_cols=132 Identities=27% Similarity=0.271 Sum_probs=103.2
Q ss_pred CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC------------CCCCChhhcCCCc
Q 013281 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR------------IESLDPALLRPGR 352 (446)
Q Consensus 285 p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~------------~~~ld~al~r~gR 352 (446)
|+||||||++.| +-+....|+..|.. .---++|+|||+ |+-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 789999999988 55555555555532 223468888886 4457778887 7
Q ss_pred eeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013281 353 IDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEK 431 (446)
Q Consensus 353 f~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~ 431 (446)
+- .|...+++.++.++|+++.+....+. ++..++.|+.....-|-+.--+|+.-|.+.|.++++..|..+|++.|.+-
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 73 78888899999999999998776654 44557888888777788888899999999999999999999999999876
Q ss_pred HHhhh
Q 013281 432 VMFKK 436 (446)
Q Consensus 432 v~~~~ 436 (446)
.+..+
T Consensus 432 F~D~k 436 (450)
T COG1224 432 FLDVK 436 (450)
T ss_pred HhhHH
Confidence 65433
No 130
>PRK05642 DNA replication initiation factor; Validated
Probab=99.57 E-value=3.7e-13 Score=128.65 Aligned_cols=179 Identities=18% Similarity=0.231 Sum_probs=123.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCccccccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~ 301 (446)
...++||||+|||||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+..+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCC--
Confidence 3579999999999999999999764 5678888888776431 122222222 258999999988422
Q ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---CCChhhcCCCce--eeEEEcCCCCHHHHHHHHHHHHc
Q 013281 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE---SLDPALLRPGRI--DRKIEFPLPDIKTRRRIFQIHTS 376 (446)
Q Consensus 302 ~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~---~ld~al~r~gRf--~~~i~~~~P~~~er~~Il~~~~~ 376 (446)
...+..|..+++.+. ..+..++|+++..+. ...|.+++ || ...+.+..|+.+++..+++..+.
T Consensus 113 -------~~~~~~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 113 -------ADWEEALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred -------hHHHHHHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 234566788887653 233444444444443 34688888 87 35788999999999999996665
Q ss_pred cCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 377 RMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 377 ~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
...+. ++..++.|+....+ +.+.+..++..-...++..+ ..||..-+.+++
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~~~~L 232 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQAQ-RKLTIPFLKETL 232 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHh
Confidence 54433 33446777777775 88888888887766665544 458887777665
No 131
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.3e-13 Score=148.28 Aligned_cols=194 Identities=17% Similarity=0.198 Sum_probs=135.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE----Ee
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR----VV 257 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~----v~ 257 (446)
.+++.+.+|++++|.+.++..|..++... +.+.++||+||+|||||++|+++|+.+.+.... -.
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 46778899999999999999999998862 234579999999999999999999988652100 00
Q ss_pred ---ch---hhh----------hhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHHHHHHH
Q 013281 258 ---GS---ELI----------QKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLE 317 (446)
Q Consensus 258 ---~s---~l~----------~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~ 317 (446)
|. .+. ..........+++++..+... ...||||||+|.| +.+.+..|+.
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~naLLK 143 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFNALLK 143 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHHHHHH
Confidence 00 000 011123345677777666532 3469999999999 3444555555
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCC
Q 013281 318 LLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEF 396 (446)
Q Consensus 318 lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~ 396 (446)
.|+ . ....+++|++|+.++.+.+.+++ |+. .++|+.++.++....+...+.+.+.. .+..+..++..+.|
T Consensus 144 ~LE---e--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G- 214 (620)
T PRK14948 144 TLE---E--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG- 214 (620)
T ss_pred HHh---c--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-
Confidence 554 2 34578888888888888889988 884 78999999988888887777654433 22346777777776
Q ss_pred cHHHHHHHHHH
Q 013281 397 SGADIKAICTE 407 (446)
Q Consensus 397 s~~di~~l~~~ 407 (446)
+.+++.+++..
T Consensus 215 ~lr~A~~lLek 225 (620)
T PRK14948 215 GLRDAESLLDQ 225 (620)
T ss_pred CHHHHHHHHHH
Confidence 55666666554
No 132
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.56 E-value=1.7e-14 Score=146.26 Aligned_cols=197 Identities=25% Similarity=0.369 Sum_probs=138.0
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhh
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQ 263 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~ 263 (446)
...+..|+|.+.++.++.+.|+. .+.....|||.|++||||..+|++|++... .||+++||+.+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 34677899999999999999987 455677899999999999999999999875 5999999987654
Q ss_pred hh---------cCCchHHH---HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC--CC---
Q 013281 264 KY---------LGDGPKLV---RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--FD--- 326 (446)
Q Consensus 264 ~~---------~g~~~~~v---~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~~--- 326 (446)
.. -|.....+ ..-|+.|.. +.||+|||..| ..++|..|+..|++-+- ..
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCc
Confidence 32 12211111 234555544 79999999988 77899999999986431 11
Q ss_pred -CCCCeEEEEEeCCCCCCChhhcCCC--------ceeeEEEcCCCCHHHHHH----HHHHHHc----cCCCC----CccC
Q 013281 327 -SRGDVKVILATNRIESLDPALLRPG--------RIDRKIEFPLPDIKTRRR----IFQIHTS----RMTLA----DDVN 385 (446)
Q Consensus 327 -~~~~v~vI~atn~~~~ld~al~r~g--------Rf~~~i~~~~P~~~er~~----Il~~~~~----~~~~~----~~~~ 385 (446)
..-+|+||+|||+ +|...+. .| |+. ++.+..|...+|.+ +..+++. ..+.. +...
T Consensus 354 ~ikVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~A 429 (550)
T COG3604 354 TIKVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEA 429 (550)
T ss_pred eeEEEEEEEeccch--hHHHHHH-cCcchhhhhhccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHH
Confidence 1236999999998 2222222 23 443 66777788888755 2233333 33331 2223
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 013281 386 LEEFVMTKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 386 l~~la~~t~g~s~~di~~l~~~A~~~A 412 (446)
++.|..+..-.+.+++++++.+|...|
T Consensus 430 l~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 430 LELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 566666665558899999999999988
No 133
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.56 E-value=3e-14 Score=146.22 Aligned_cols=208 Identities=20% Similarity=0.310 Sum_probs=138.5
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEechhhhhh
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSELIQK 264 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v~~s~l~~~ 264 (446)
..+.+++|.+..++++++.+.. -......|||+|++||||.++|++|+....+ ||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k-----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK-----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH-----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4688899999999999999987 2445668999999999999999999998754 9999999876432
Q ss_pred h-----cC----CchHH---HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC--C----C
Q 013281 265 Y-----LG----DGPKL---VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--F----D 326 (446)
Q Consensus 265 ~-----~g----~~~~~---v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~----~ 326 (446)
. .| ..... -...|+.|.. ++||||||..+ ..+.|..|+.+|++-.- . .
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 1 11 11111 1235555544 89999999998 78899999999985321 1 1
Q ss_pred CCCCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHcc----CCCC-CccCH---H
Q 013281 327 SRGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSR----MTLA-DDVNL---E 387 (446)
Q Consensus 327 ~~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~----~~~~-~~~~l---~ 387 (446)
..-+|+||+|||+.- .+-+.|.- |+. ++.+..|...+|.+ ++.+++.+ .+.. ..++- .
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~ 349 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALA 349 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 123799999999731 12233333 443 88888999999877 33444333 3222 23333 3
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 013281 388 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFK 426 (446)
Q Consensus 388 ~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~ 426 (446)
.|..+.+-.+.++|++++.+|...+ ....|+.+|+.
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 4444443335677777777766655 44445555543
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.55 E-value=1.1e-13 Score=152.69 Aligned_cols=201 Identities=21% Similarity=0.307 Sum_probs=138.1
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCC----CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh---
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIK----PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK--- 264 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~----~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~--- 264 (446)
.|+|++.+++.+.+.+... +.|+. |...+||+||||||||++|+++|+.++.++++++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4789999999998888752 22332 22358999999999999999999999999999999887542
Q ss_pred --hcCCchH-----HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC------CCCCe
Q 013281 265 --YLGDGPK-----LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRGDV 331 (446)
Q Consensus 265 --~~g~~~~-----~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~~~~v 331 (446)
.+|..+. ....+....+.+..+||||||||.+ +.+++..|++++..-.-.+ .-.++
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 2332221 1123444445566789999999998 6778889999887531111 12368
Q ss_pred EEEEEeCCCC-------------------------CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC-------C
Q 013281 332 KVILATNRIE-------------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-------T 379 (446)
Q Consensus 332 ~vI~atn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~-------~ 379 (446)
+||+|||... .+.|.++. ||+.+|.|.+.+.++...|++..+..+ +
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~ 673 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKN 673 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999998631 25667776 999999999999999999998877532 1
Q ss_pred CC---CccCHHHHHHh--CCCCcHHHHHHHHHHHHHHHH
Q 013281 380 LA---DDVNLEEFVMT--KDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 380 ~~---~~~~l~~la~~--t~g~s~~di~~l~~~A~~~Al 413 (446)
+. .+..++.|+.. ...+..+.|+.+++.....++
T Consensus 674 ~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 674 IKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred CeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHH
Confidence 11 12224455553 233455667766665544443
No 135
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.55 E-value=1.1e-13 Score=141.40 Aligned_cols=221 Identities=19% Similarity=0.304 Sum_probs=141.0
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchh----hhhhCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhc
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPEL----YEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYL 266 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~----~~~~g~-~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-~~~ 266 (446)
|+|++.+++.+..++......-.. ...-++ ....++||+||||||||++|+++|..++.+|..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 699999999998887432111100 000011 12457999999999999999999999999999999888753 577
Q ss_pred CCc-hHHHHHHHHHH----hhcCCeEEEEcCcccccccccCCC---CCCcHHHHHHHHHHHHHhc-------C-CCCCCC
Q 013281 267 GDG-PKLVRELFRVA----DDLSPSIVFIDEIDAVGTKRYDAH---SGGEREIQRTMLELLNQLD-------G-FDSRGD 330 (446)
Q Consensus 267 g~~-~~~v~~lf~~a----~~~~p~IL~IDEid~l~~~r~~~~---~~~~~~~~~~l~~lL~~ld-------~-~~~~~~ 330 (446)
|.. ...+..++..+ ....++||||||||.+..++.+.. .-+...+|+.|+++|+..- + .....+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 33444444322 234578999999999986532211 1112367888888884210 0 011235
Q ss_pred eEEEEEeCCC---------------------------C-----------------------CCChhhcCCCceeeEEEcC
Q 013281 331 VKVILATNRI---------------------------E-----------------------SLDPALLRPGRIDRKIEFP 360 (446)
Q Consensus 331 v~vI~atn~~---------------------------~-----------------------~ld~al~r~gRf~~~i~~~ 360 (446)
.++|+|+|-. + .+.|+++. |++.++.|.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecC
Confidence 6777777651 0 03355554 999999999
Q ss_pred CCCHHHHHHHHHHH----Hcc----C---CCC---CccCHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHh
Q 013281 361 LPDIKTRRRIFQIH----TSR----M---TLA---DDVNLEEFVMT--KDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 361 ~P~~~er~~Il~~~----~~~----~---~~~---~~~~l~~la~~--t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
+.+.++..+|+... +.. + ++. .+..++.|+.. ...+-.+-|+.+++...+.++.+
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 99999999998752 211 1 111 22235667765 33455678888888877766654
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=3.3e-13 Score=145.15 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=139.7
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------- 251 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--------- 251 (446)
+.+++.+.+|++|+|.+.+++.|..++..- ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 567888999999999999999999999762 34667999999999999999999998753
Q ss_pred ----------------cEEEEechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHH
Q 013281 252 ----------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREI 311 (446)
Q Consensus 252 ----------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~ 311 (446)
.++.+++.. ......++.+...+... ...|++|||+|.+ +...
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a 137 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAA 137 (614)
T ss_pred CCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHH
Confidence 222232221 11134455655554332 2359999999999 4445
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCc-cCHHHHH
Q 013281 312 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFV 390 (446)
Q Consensus 312 ~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-~~l~~la 390 (446)
+..|+..|++. ...+++|++|+....+-+.+++ |+. .++|..++.++...++...+...++..+ ..+..|+
T Consensus 138 ~naLLK~LEep-----p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 138 FNAFLKTLEEP-----PSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred HHHHHHHHhCC-----CCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56666666532 3567788888877889999988 884 7999999999999999888777665533 3477788
Q ss_pred HhCCCCcHHHHHHHHHHHHHH
Q 013281 391 MTKDEFSGADIKAICTEAGLL 411 (446)
Q Consensus 391 ~~t~g~s~~di~~l~~~A~~~ 411 (446)
..+.| +.+++.+++.....+
T Consensus 210 ~~s~g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 210 QKADG-GMRDALSIFDQVVSF 229 (614)
T ss_pred HHcCC-CHHHHHHHHHHHHHh
Confidence 87765 666666666554433
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=2.2e-13 Score=146.49 Aligned_cols=205 Identities=15% Similarity=0.216 Sum_probs=140.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--------
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF-------- 253 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~-------- 253 (446)
.+++.+.+|++|+|.+.+++.|+.++... ..+..+|||||+|+|||++|+++|+.+.+..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 46788999999999999999999988762 2355689999999999999999999875421
Q ss_pred -----------------EEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 254 -----------------LRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 254 -----------------i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
+.++.+. ......++++.+.+.. ....||||||+|.| +.+.+
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~ 137 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAF 137 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHH
Confidence 1111110 1122334554443332 23469999999998 33344
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+..| +.. ...++||++++..+.+.+.+.+ |+. .++|+.++..+...++...+...++. ++..+..|+.
T Consensus 138 naLLk~L---Eep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~ 209 (585)
T PRK14950 138 NALLKTL---EEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIAR 209 (585)
T ss_pred HHHHHHH---hcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4444444 332 3567888888877778888877 775 78999999999999988887665543 2334677777
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
.+.| +.+++.+.+.....+ ....|+.+++...
T Consensus 210 ~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 210 AATG-SMRDAENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 7776 777777776654332 2345777776543
No 138
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=2.9e-13 Score=140.94 Aligned_cols=190 Identities=16% Similarity=0.232 Sum_probs=136.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcCCchH---HHHHHHHHHhhcCCeEEEEcCccccc
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST-----SATFLRVVGSELIQKYLGDGPK---LVRELFRVADDLSPSIVFIDEIDAVG 297 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~-----~~~~i~v~~s~l~~~~~g~~~~---~v~~lf~~a~~~~p~IL~IDEid~l~ 297 (446)
.+++|||++|||||+|++++++++ +..++++++.++...+...... .+..+.... ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 469999999999999999999954 4678899998887765432221 122221221 245799999999884
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-C---CCChhhcCCCcee--eEEEcCCCCHHHHHHHH
Q 013281 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI-E---SLDPALLRPGRID--RKIEFPLPDIKTRRRIF 371 (446)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~-~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il 371 (446)
. ....+..+..+++.+.. .+. .+|+|+|.+ . .+++.|.+ ||. ..+.+..|+.+++.+|+
T Consensus 220 ~---------k~~~~e~lf~l~N~~~~---~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 220 Y---------KEKTNEIFFTIFNNFIE---NDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred C---------CHHHHHHHHHHHHHHHH---cCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 2 23456777777776642 222 467776653 2 45778887 874 58889999999999999
Q ss_pred HHHHccCCC---CCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHH
Q 013281 372 QIHTSRMTL---ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER-RMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 372 ~~~~~~~~~---~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~-~~~It~~d~~~A~~~v~ 433 (446)
+.++...++ -++..++.|+....| +++.+..+|..+...|.... ...||.+.+.+++..+.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 999876543 233446778888876 88999999999887776653 25688888888887653
No 139
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.54 E-value=1.2e-13 Score=138.34 Aligned_cols=221 Identities=21% Similarity=0.209 Sum_probs=145.5
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEE-------
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-------SATFL------- 254 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-------~~~~i------- 254 (446)
.|+.|+|++..+..+.-.+..| ...+|+|.|+||||||+++++++..+ +.+|-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4788999999998876655443 13479999999999999999999876 22221
Q ss_pred --EEechhh-------------------hh-----hhcCCch--HH--------HHHHHHHHhhcCCeEEEEcCcccccc
Q 013281 255 --RVVGSEL-------------------IQ-----KYLGDGP--KL--------VRELFRVADDLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 255 --~v~~s~l-------------------~~-----~~~g~~~--~~--------v~~lf~~a~~~~p~IL~IDEid~l~~ 298 (446)
..+|... .. ..+|... .. -..++.. ...++|||||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhC--
Confidence 0011110 00 1111100 00 0011111 23479999999998
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHh------cCCC--CCCCeEEEEEeCCCC-CCChhhcCCCceeeEEEcCCCCH-HHHH
Q 013281 299 KRYDAHSGGEREIQRTMLELLNQL------DGFD--SRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLPDI-KTRR 368 (446)
Q Consensus 299 ~r~~~~~~~~~~~~~~l~~lL~~l------d~~~--~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P~~-~er~ 368 (446)
+...|..|++.+.+- +|.. ...++++|+++|..+ .++++++. ||...+.++.|+. +++.
T Consensus 144 ---------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 144 ---------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 677899999988642 1211 124578888888655 68999999 9999999999875 8888
Q ss_pred HHHHHHHccC----C----CC-----------------Ccc-----C---HHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 369 RIFQIHTSRM----T----LA-----------------DDV-----N---LEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 369 ~Il~~~~~~~----~----~~-----------------~~~-----~---l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
+|++...... . .. .++ . +..++..+..-+.+--..+++.|...|..+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 8887743210 0 00 011 1 123333443335566677889999999999
Q ss_pred CCCCccHHHHHHHHHHHHhhhcc
Q 013281 416 RRMKVTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 416 ~~~~It~~d~~~A~~~v~~~~~~ 438 (446)
++..|+.+|+..+..-++.+.-.
T Consensus 293 GR~~V~~dDv~~~a~~vL~HR~~ 315 (337)
T TIGR02030 293 GRTEVTVDDIRRVAVLALRHRLR 315 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999887654
No 140
>PRK06620 hypothetical protein; Validated
Probab=99.54 E-value=3.6e-13 Score=126.96 Aligned_cols=195 Identities=18% Similarity=0.233 Sum_probs=126.3
Q ss_pred CCCCCcccc-cCc--HHHHHHHHHHhhcCCCCchhhhhhCCCC-CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 013281 185 APLESYADI-GGL--DAQIQEIKEAVELPLTHPELYEDIGIKP-PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (446)
Q Consensus 185 ~~~~~~~di-~Gl--~~~i~~l~e~i~~pl~~~~~~~~~g~~~-~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~ 260 (446)
.+..+|+++ +|- ..+...++++...+ +..+ ...++||||||||||+|++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF----------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc----------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 445567774 333 33555566655432 2222 2679999999999999999999988754322 111
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
. ....+. ...+|+|||||.+ . +..+..+++.+. ..+..++|+++..+
T Consensus 78 ~-----------~~~~~~-----~~d~lliDdi~~~-----------~---~~~lf~l~N~~~---e~g~~ilits~~~p 124 (214)
T PRK06620 78 F-----------NEEILE-----KYNAFIIEDIENW-----------Q---EPALLHIFNIIN---EKQKYLLLTSSDKS 124 (214)
T ss_pred h-----------chhHHh-----cCCEEEEeccccc-----------h---HHHHHHHHHHHH---hcCCEEEEEcCCCc
Confidence 0 011111 2369999999965 1 134556665543 23556666666444
Q ss_pred CC--CChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 341 ES--LDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 341 ~~--ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
.. + ++|++ |+. ..+.+..|+.+++..+++.++....+. ++..++.|+....+ +.+.+..++......+...
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~ 200 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALIS 200 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHc
Confidence 43 5 78887 774 379999999999999999887654443 33446778888775 7888888888765555554
Q ss_pred CCCCccHHHHHHHH
Q 013281 416 RRMKVTHTDFKKAK 429 (446)
Q Consensus 416 ~~~~It~~d~~~A~ 429 (446)
+ ..||...+.+++
T Consensus 201 ~-~~it~~~~~~~l 213 (214)
T PRK06620 201 K-RKITISLVKEVL 213 (214)
T ss_pred C-CCCCHHHHHHHh
Confidence 4 468988887764
No 141
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.53 E-value=5.6e-14 Score=146.12 Aligned_cols=199 Identities=18% Similarity=0.256 Sum_probs=150.6
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-------E
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF-------L 254 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~-------i 254 (446)
..++.+.+|+|++|.+.+.+.|..++..- +...+.||.||.|||||++||.+|+.+++.- .
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 45778899999999999999999999872 3456799999999999999999999887631 1
Q ss_pred EE-echhhhhh----------hcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHH
Q 013281 255 RV-VGSELIQK----------YLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (446)
Q Consensus 255 ~v-~~s~l~~~----------~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL 319 (446)
.+ .|-++... -...+-..+|.+.+.+.. ..+.|.+|||+|.|. ...++.||
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALL 140 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALL 140 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHh
Confidence 11 11111111 011233455666666543 245699999999992 34566777
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCc-cCHHHHHHhCCCCcH
Q 013281 320 NQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVMTKDEFSG 398 (446)
Q Consensus 320 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~-~~l~~la~~t~g~s~ 398 (446)
..++. +..+|++|+||..++.+++.+++ |+. .+.|...+.++....|...+.+..+..+ ..+..++...+| |.
T Consensus 141 KTLEE--PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~ 214 (515)
T COG2812 141 KTLEE--PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SL 214 (515)
T ss_pred ccccc--CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Ch
Confidence 76663 46789999999999999999999 885 8889999999999999999888777644 346778888887 88
Q ss_pred HHHHHHHHHHHHHH
Q 013281 399 ADIKAICTEAGLLA 412 (446)
Q Consensus 399 ~di~~l~~~A~~~A 412 (446)
+|.-+++..|....
T Consensus 215 RDalslLDq~i~~~ 228 (515)
T COG2812 215 RDALSLLDQAIAFG 228 (515)
T ss_pred hhHHHHHHHHHHcc
Confidence 99999998876553
No 142
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.53 E-value=5.4e-14 Score=148.49 Aligned_cols=210 Identities=20% Similarity=0.273 Sum_probs=135.4
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHH-----------hCCcEEEE
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS-----------TSATFLRV 256 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~-----------~~~~~i~v 256 (446)
.+|++|+|.+..++++++.+... .....+|||+|++||||+++|++|++. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46889999999999999998762 234568999999999999999999987 34699999
Q ss_pred echhhhhhh-----cCCch--------HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc
Q 013281 257 VGSELIQKY-----LGDGP--------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD 323 (446)
Q Consensus 257 ~~s~l~~~~-----~g~~~--------~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 323 (446)
+|+.+.... .|... ..-..+|+.|. .++||||||+.| ....|..|+.+|++-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 998764321 12110 01123555554 389999999999 7788999999997532
Q ss_pred CC------CCCCCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHcc----CCCCC
Q 013281 324 GF------DSRGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSR----MTLAD 382 (446)
Q Consensus 324 ~~------~~~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~----~~~~~ 382 (446)
.. ....++++|++||..- .+.+.|.. |+. .+.+..|...+|.+ ++..++.. .+...
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 11 1124689999998631 12223332 332 56677787777765 44444443 22221
Q ss_pred ccC--------HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 013281 383 DVN--------LEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425 (446)
Q Consensus 383 ~~~--------l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~ 425 (446)
..+ +..|..+.+-.+.++|++++.++...+-......|+.+++
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 111 1344444444578899999998877542222234554444
No 143
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.51 E-value=5.9e-13 Score=125.96 Aligned_cols=198 Identities=23% Similarity=0.326 Sum_probs=123.9
Q ss_pred CCCCccccc-C--cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 013281 186 PLESYADIG-G--LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVV 257 (446)
Q Consensus 186 ~~~~~~di~-G--l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i~v~ 257 (446)
|..+|++.+ | .+.+...+......+ +. ....++||||+|+|||+|++|++++. +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 456787763 4 344455555554543 11 22359999999999999999999864 56789999
Q ss_pred chhhhhhhcCCchH-HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 013281 258 GSELIQKYLGDGPK-LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336 (446)
Q Consensus 258 ~s~l~~~~~g~~~~-~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~a 336 (446)
+.++...+...... .+..+....+ ...+|+||+++.+.. ....+..+..+++.+.. .+.. +|+|
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~~---~~k~-li~t 136 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG---------KQRTQEELFHLFNRLIE---SGKQ-LILT 136 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHHH---TTSE-EEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC---------chHHHHHHHHHHHHHHh---hCCe-EEEE
Confidence 98887765322111 1122222222 347999999999942 34567888888887642 3344 5555
Q ss_pred e-CCCC---CCChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCCCCcc-CHHHHHHhCCCCcHHHHHHHHHHHH
Q 013281 337 T-NRIE---SLDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLADDV-NLEEFVMTKDEFSGADIKAICTEAG 409 (446)
Q Consensus 337 t-n~~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~~~~-~l~~la~~t~g~s~~di~~l~~~A~ 409 (446)
+ ..|. .+++.|.+ ||. ..+.+..|+.++|+.|++.++....+.-+. -++.|+....+ +.++|..++....
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 5 4444 35677877 764 489999999999999999998877665333 35667776664 7888888877665
Q ss_pred HHH
Q 013281 410 LLA 412 (446)
Q Consensus 410 ~~A 412 (446)
..+
T Consensus 214 ~~~ 216 (219)
T PF00308_consen 214 AYA 216 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 144
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.50 E-value=1e-13 Score=146.43 Aligned_cols=211 Identities=18% Similarity=0.256 Sum_probs=136.7
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK 264 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~ 264 (446)
.+|++|+|.+..++.+.+.+... .....+|||+|++||||+++|++|++.. +.||+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 67899999999999999998762 2345689999999999999999999865 469999999876432
Q ss_pred h-----cCCc--------hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC------
Q 013281 265 Y-----LGDG--------PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------ 325 (446)
Q Consensus 265 ~-----~g~~--------~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------ 325 (446)
. .|.. ......+|+.|. .++||||||+.| +...|..|+.+|++-...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 1 1111 011123455544 389999999999 778899999999753211
Q ss_pred CCCCCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHccC----CCC-CccCHHH-
Q 013281 326 DSRGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSRM----TLA-DDVNLEE- 388 (446)
Q Consensus 326 ~~~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~~----~~~-~~~~l~~- 388 (446)
....++++|++||..- .+.+.|.. |+. .+.+..|...+|.+ ++..++... ... .+..+..
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 0123679999998632 12233333 442 45666677777765 444444432 211 1111222
Q ss_pred ------HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 013281 389 ------FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFK 426 (446)
Q Consensus 389 ------la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~ 426 (446)
|..+.+-.+.++|++++.++...+.......|+.+|+.
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 55555555778888988888766422223457777654
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.50 E-value=1.3e-12 Score=123.43 Aligned_cols=168 Identities=23% Similarity=0.307 Sum_probs=118.4
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE 260 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~ 260 (446)
....+.+++++|.+.+++.|.+.....+.. .+..++||||++|||||++++++.++. +..++.|....
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 445678999999999999999988875442 467889999999999999999999976 55777777666
Q ss_pred hhhhhcCCchHHHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC-C-CCCCCeEEEEEe
Q 013281 261 LIQKYLGDGPKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG-F-DSRGDVKVILAT 337 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~-~-~~~~~v~vI~at 337 (446)
+.. +..++...+. ...-|||+|++. +.. ....-..|..+| +| + ....||++.+|+
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~--------~d~~yk~LKs~L---eGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLS--FEE--------GDTEYKALKSVL---EGGLEARPDNVLIYATS 148 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCC--CCC--------CcHHHHHHHHHh---cCccccCCCcEEEEEec
Confidence 532 3344444432 235799999964 111 112224444444 33 2 234689999999
Q ss_pred CCCCCCChhhc----------C-----------CCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC
Q 013281 338 NRIESLDPALL----------R-----------PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (446)
Q Consensus 338 n~~~~ld~al~----------r-----------~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~ 382 (446)
|+-+.++..+. . ..||...+.|..|+.++-.+|++.++...++.-
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 98543322111 1 239999999999999999999999998776553
No 146
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.50 E-value=4.9e-13 Score=145.01 Aligned_cols=220 Identities=20% Similarity=0.251 Sum_probs=146.4
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------------------
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST------------------- 249 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~------------------- 249 (446)
.|.+|+|++.++..+.-+...| ...+|||+|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4788999999998877666553 12469999999999999999999987
Q ss_pred ----------------CCcEEEEechhhhhhhcCCch--HHH--------HHHHHHHhhcCCeEEEEcCcccccccccCC
Q 013281 250 ----------------SATFLRVVGSELIQKYLGDGP--KLV--------RELFRVADDLSPSIVFIDEIDAVGTKRYDA 303 (446)
Q Consensus 250 ----------------~~~~i~v~~s~l~~~~~g~~~--~~v--------~~lf~~a~~~~p~IL~IDEid~l~~~r~~~ 303 (446)
..+|+.+.++......+|... ..+ ..++..| ..+|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-------
Confidence 246666655443333333210 000 1111111 2369999999999
Q ss_pred CCCCcHHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCC-CCCChhhcCCCceeeEEEcCCCC-HHHHHHHHHH
Q 013281 304 HSGGEREIQRTMLELLNQL------DGF--DSRGDVKVILATNRI-ESLDPALLRPGRIDRKIEFPLPD-IKTRRRIFQI 373 (446)
Q Consensus 304 ~~~~~~~~~~~l~~lL~~l------d~~--~~~~~v~vI~atn~~-~~ld~al~r~gRf~~~i~~~~P~-~~er~~Il~~ 373 (446)
+...+..|++++++- ++. ....++.+|+|+|.. ..+.++|+. ||+..+.++.+. .+++.+++..
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 677888898888742 111 112468899999864 368889998 999888888764 5667777654
Q ss_pred HHcc-------------------------------CCCCCccCHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHhCCCC
Q 013281 374 HTSR-------------------------------MTLADDVNLEEFVMTK--DEF-SGADIKAICTEAGLLALRERRMK 419 (446)
Q Consensus 374 ~~~~-------------------------------~~~~~~~~l~~la~~t--~g~-s~~di~~l~~~A~~~Al~~~~~~ 419 (446)
.... ..+ .+..+..++... -|. +.+-...+++.|...|..+++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~ 291 (633)
T TIGR02442 213 RLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRI-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRR 291 (633)
T ss_pred HHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 3210 000 111122233222 233 34555667888888999999999
Q ss_pred ccHHHHHHHHHHHHhhhcc
Q 013281 420 VTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 420 It~~d~~~A~~~v~~~~~~ 438 (446)
|+.+|+..|+.-++.+...
T Consensus 292 V~~~Dv~~A~~lvL~hR~~ 310 (633)
T TIGR02442 292 VTAEDVREAAELVLPHRRR 310 (633)
T ss_pred CCHHHHHHHHHHHhhhhcc
Confidence 9999999999999976543
No 147
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.49 E-value=6.3e-13 Score=115.17 Aligned_cols=140 Identities=44% Similarity=0.685 Sum_probs=95.7
Q ss_pred CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCCchH
Q 013281 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPK 271 (446)
Q Consensus 195 Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~~~~ 271 (446)
|.+.+++.+...+.. ....+++|+||||||||++++.+++.+ +.+++.+++.............
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 566677777776654 235679999999999999999999998 8899999988765543221111
Q ss_pred H---HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCC--CCCh
Q 013281 272 L---VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-DSRGDVKVILATNRIE--SLDP 345 (446)
Q Consensus 272 ~---v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~-~~~~~v~vI~atn~~~--~ld~ 345 (446)
. ....+..+....+.+|+|||++.+ .......+..++...... ....++.+|+++|... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 112233344456789999999987 233445556666554221 0135789999998876 6777
Q ss_pred hhcCCCceeeEEEcC
Q 013281 346 ALLRPGRIDRKIEFP 360 (446)
Q Consensus 346 al~r~gRf~~~i~~~ 360 (446)
.+.+ ||+..+.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 7776 998777765
No 148
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.49 E-value=2.4e-13 Score=136.20 Aligned_cols=192 Identities=20% Similarity=0.256 Sum_probs=126.1
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhh----
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY---- 265 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~~---- 265 (446)
|+|.+..++.+.+.+... ......|||+|++||||+++|++|+.... .+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 468888888888888763 23456799999999999999999998764 599999998654321
Q ss_pred -cCCch-------HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC------CCCCCCe
Q 013281 266 -LGDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG------FDSRGDV 331 (446)
Q Consensus 266 -~g~~~-------~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~------~~~~~~v 331 (446)
.|... .....+|+.| ..++||||||+.| +...|..|+.+|+.-.. -....++
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HhccccccccCcccccCCchhhC---CCCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 11100 0011234444 3489999999999 77889999999875321 0112478
Q ss_pred EEEEEeCCC-------CCCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHcc----CCCC-----CccCHHHHHH
Q 013281 332 KVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSR----MTLA-----DDVNLEEFVM 391 (446)
Q Consensus 332 ~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~----~~~~-----~~~~l~~la~ 391 (446)
++|++|+.. ..+.+.|+. |+. .+.+..|...+|.+ ++..++.. .+.. .+..+..|..
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 999999763 234455655 664 45677777777755 33333322 2211 2223556666
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~A 412 (446)
+..-.+.++|++++..|...+
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhC
Confidence 665557788888888877654
No 149
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.49 E-value=3e-13 Score=133.54 Aligned_cols=139 Identities=16% Similarity=0.209 Sum_probs=104.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh--hcCCch----------HHHHHHHHHHhhcCCeEEEEcC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK--YLGDGP----------KLVRELFRVADDLSPSIVFIDE 292 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~--~~g~~~----------~~v~~lf~~a~~~~p~IL~IDE 292 (446)
.++|||.||||||||++|+++|..++.++++++++..... .+|... ......+-.|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 5689999999999999999999999999999998776553 344321 111223344443 457899999
Q ss_pred cccccccccCCCCCCcHHHHHHHHHHHHH-----hcC----CCCCCCeEEEEEeCCCC------------CCChhhcCCC
Q 013281 293 IDAVGTKRYDAHSGGEREIQRTMLELLNQ-----LDG----FDSRGDVKVILATNRIE------------SLDPALLRPG 351 (446)
Q Consensus 293 id~l~~~r~~~~~~~~~~~~~~l~~lL~~-----ld~----~~~~~~v~vI~atn~~~------------~ld~al~r~g 351 (446)
+|.. ..+.+..|..+|+. +.+ +....+++||+|+|..+ .++.+++.
T Consensus 143 in~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9988 66778888888873 111 22334789999999854 36889988
Q ss_pred ceeeEEEcCCCCHHHHHHHHHHHHcc
Q 013281 352 RIDRKIEFPLPDIKTRRRIFQIHTSR 377 (446)
Q Consensus 352 Rf~~~i~~~~P~~~er~~Il~~~~~~ 377 (446)
||..++.+..|+.++-.+|+......
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99878899999999999999876543
No 150
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.2e-13 Score=145.48 Aligned_cols=165 Identities=25% Similarity=0.430 Sum_probs=128.0
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCC----ceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhh
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP----KGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK 264 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~----~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~ 264 (446)
.++|++.++..+-.+|... +.|+..| .++||.||+|+|||-||+++|..+. ..++++++|++..+
T Consensus 492 rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4799999999999999873 4455433 3588999999999999999999986 79999999999764
Q ss_pred -----hcCCchHHH-----HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCC------
Q 013281 265 -----YLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR------ 328 (446)
Q Consensus 265 -----~~g~~~~~v-----~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~------ 328 (446)
.+|..+..+ ..+-+..+....|||++|||+.. ++++...|+++|..-.-.+..
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEec
Confidence 344444443 23556666777899999999988 888999999998743222222
Q ss_pred CCeEEEEEeCCCC----------------------------CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc
Q 013281 329 GDVKVILATNRIE----------------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (446)
Q Consensus 329 ~~v~vI~atn~~~----------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~ 377 (446)
.+.++|||||--. .+.|+++. |++.+|.|.+.+.+...+|+..++..
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 3689999998421 24567777 99999999999999999999877654
No 151
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.48 E-value=5.2e-13 Score=142.57 Aligned_cols=211 Identities=22% Similarity=0.321 Sum_probs=137.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l 261 (446)
.+..++++|+|.+..++++.+.+... ......|||+|++|||||++|++|+... +.+|+.++|..+
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 34468999999999999999988873 2345679999999999999999999975 469999999876
Q ss_pred hhhh-----cCCchHH-------HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC----
Q 013281 262 IQKY-----LGDGPKL-------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF---- 325 (446)
Q Consensus 262 ~~~~-----~g~~~~~-------v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~---- 325 (446)
.... .|..... ....|..+ ..++||||||+.| ....|..|+.+|..-...
T Consensus 259 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 259 SETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred CHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCC
Confidence 4321 1111000 01112322 3589999999999 677899999998752210
Q ss_pred --CCCCCeEEEEEeCCC-------CCCChhhcCCCceeeEEEcCCCCHHHHH----HHHHHHHccC----CCC---CccC
Q 013281 326 --DSRGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRR----RIFQIHTSRM----TLA---DDVN 385 (446)
Q Consensus 326 --~~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~----~Il~~~~~~~----~~~---~~~~ 385 (446)
....++++|++|+.. ..+.+.|.. |+. .+.+..|...+|. .++..++... ... .+..
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 011368999999763 123344444 443 3445555555553 3444444332 111 2223
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 013281 386 LEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFK 426 (446)
Q Consensus 386 l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~ 426 (446)
+..|..+.+-.+.++|++++..|...+ ....|+.+|+.
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 556666665557888888888877654 45678888875
No 152
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.48 E-value=4.7e-13 Score=134.14 Aligned_cols=196 Identities=20% Similarity=0.238 Sum_probs=129.1
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhh-
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK- 264 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~- 264 (446)
-+++++|.+..++.+.+.+... ...+..|||+|++||||+++|++|+.... .+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 3567899999999999988873 24466799999999999999999998764 59999999876422
Q ss_pred ----hcCCch-------HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC------CC
Q 013281 265 ----YLGDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DS 327 (446)
Q Consensus 265 ----~~g~~~-------~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------~~ 327 (446)
..|... ......|..+ ..++||||||+.| ....|..|+.+++.-... ..
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 111110 0011233333 3489999999999 677899999988652210 01
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHc----cCCCC-----CccCHH
Q 013281 328 RGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTS----RMTLA-----DDVNLE 387 (446)
Q Consensus 328 ~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~----~~~~~-----~~~~l~ 387 (446)
..+++||++|+.. ..+.+.|+. ||. .+.+..|...+|.+ ++..++. ..+.. .+..+.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 2368999998763 245566665 663 34556666666654 4444432 22211 222345
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHH
Q 013281 388 EFVMTKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 388 ~la~~t~g~s~~di~~l~~~A~~~A 412 (446)
.|..+..-.+.++|++++..|...+
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 5666655557788888888887643
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.47 E-value=1.8e-12 Score=145.03 Aligned_cols=204 Identities=22% Similarity=0.332 Sum_probs=140.5
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCC----CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGI----KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ 263 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~ 263 (446)
..|+|.+.+++.+.+.+.... .|+ +|...+||+||||||||++|+++|..+ +.+|++++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 458999999999999998631 122 234569999999999999999999987 45899999988644
Q ss_pred h-----hcCCchHH-----HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC------
Q 013281 264 K-----YLGDGPKL-----VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS------ 327 (446)
Q Consensus 264 ~-----~~g~~~~~-----v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~------ 327 (446)
. .+|..+.. ...+....+....+|||||||+.+ +..++..|+++|.+-.-.+.
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEe
Confidence 2 22222111 122334444555679999999988 77889999999865321111
Q ss_pred CCCeEEEEEeCCCC-------------------------CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc-----
Q 013281 328 RGDVKVILATNRIE-------------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR----- 377 (446)
Q Consensus 328 ~~~v~vI~atn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~----- 377 (446)
-.+++||+|||... .+.|.|+. |++.++.|.+++.+...+|+...+..
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l 783 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRL 783 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHH
Confidence 24677999999721 14466776 99999999999999999998866542
Q ss_pred --CCCC---CccCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHh
Q 013281 378 --MTLA---DDVNLEEFVMTKD--EFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 378 --~~~~---~~~~l~~la~~t~--g~s~~di~~l~~~A~~~Al~~ 415 (446)
..+. .+..++.|+.... .+..+.|+++++......+.+
T Consensus 784 ~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 784 AERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 1111 2223456666533 456788888888776655543
No 154
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.46 E-value=2.5e-13 Score=137.22 Aligned_cols=198 Identities=24% Similarity=0.339 Sum_probs=133.1
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEechhhh
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELI 262 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~s~l~ 262 (446)
...+.+++|.+...+++++.+... .....+||++|++||||+++|++|+... ..||+.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 456888999999999999988872 2335579999999999999999998643 4599999999876
Q ss_pred hh-------------hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc-----C
Q 013281 263 QK-------------YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-----G 324 (446)
Q Consensus 263 ~~-------------~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld-----~ 324 (446)
.. |.| ....-..+|+.|.. ++||+|||+.+ ..+.|..|+.+|++.. +
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCC---CEEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCC
Confidence 43 222 12222346666654 89999999999 6788999999998632 2
Q ss_pred C-CCCCCeEEEEEeCC--CCCCCh--hhcCCCceeeEEEcCCCCHHHHHH----H----HHHHHccCCCCCccC----HH
Q 013281 325 F-DSRGDVKVILATNR--IESLDP--ALLRPGRIDRKIEFPLPDIKTRRR----I----FQIHTSRMTLADDVN----LE 387 (446)
Q Consensus 325 ~-~~~~~v~vI~atn~--~~~ld~--al~r~gRf~~~i~~~~P~~~er~~----I----l~~~~~~~~~~~~~~----l~ 387 (446)
- ....+|++|+||+. .+.+-. .+.+ -|+ .+.+..|+..+|.. + ++.++.+.......+ +.
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTR-RLN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhh-hhc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1 12357999999975 122222 3333 033 45555666676644 2 333444444432222 33
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHH
Q 013281 388 EFVMTKDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 388 ~la~~t~g~s~~di~~l~~~A~~~Al 413 (446)
.|..+..-.+.+++++++..+...+.
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 44444433478999999999988874
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.46 E-value=2.2e-12 Score=143.73 Aligned_cols=201 Identities=22% Similarity=0.292 Sum_probs=135.8
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCC---CCc-eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK---PPK-GVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ 263 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~---~~~-~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~ 263 (446)
..|+|++.+++.+.+.|.... .|+. .|. .+||+||||||||.+|+++|..+ ...|+.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 358999999999999987631 1221 233 48999999999999999999988 45889999988754
Q ss_pred h-----hcCCchHHH-----HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC------
Q 013281 264 K-----YLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS------ 327 (446)
Q Consensus 264 ~-----~~g~~~~~v-----~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~------ 327 (446)
. .+|..+..+ ..+....+.+.++||+||||+.+ +++++..|++++..-.-.+.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd 706 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREID 706 (852)
T ss_pred hhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEe
Confidence 2 222221111 12334445567799999999987 67788888888874321111
Q ss_pred CCCeEEEEEeCCCC-----------------------------CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC
Q 013281 328 RGDVKVILATNRIE-----------------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (446)
Q Consensus 328 ~~~v~vI~atn~~~-----------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~ 378 (446)
-.+.+||+|||... .+.|+++. |++ .|.|.+.+.++...|+...+...
T Consensus 707 ~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 707 FKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred ccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 14689999998511 15577777 997 89999999999999998776542
Q ss_pred --------CCC---CccCHHHHHHhCCC--CcHHHHHHHHHHHHHHHH
Q 013281 379 --------TLA---DDVNLEEFVMTKDE--FSGADIKAICTEAGLLAL 413 (446)
Q Consensus 379 --------~~~---~~~~l~~la~~t~g--~s~~di~~l~~~A~~~Al 413 (446)
++. ++..++.|+....+ +-.+.++.+++.-...++
T Consensus 784 ~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~l 831 (852)
T TIGR03345 784 ARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPEL 831 (852)
T ss_pred HHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Confidence 221 12224566665533 346677777665444433
No 156
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.46 E-value=4.4e-13 Score=142.18 Aligned_cols=197 Identities=21% Similarity=0.313 Sum_probs=133.5
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhh
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY 265 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~~ 265 (446)
.+.+|+|.+..++.+.+.+... ...+..|||+|++|||||++|++|+.... .+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 6788999999999999999873 34466899999999999999999999754 699999998774321
Q ss_pred -----cCCchH-------HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC------CC
Q 013281 266 -----LGDGPK-------LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DS 327 (446)
Q Consensus 266 -----~g~~~~-------~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------~~ 327 (446)
.|.... .....|+.| ..++|||||||.| ..+.|..|+.+|+.-... ..
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 111100 011234443 3489999999999 678899999988753210 11
Q ss_pred CCCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHcc----CCCC----CccCHHH
Q 013281 328 RGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSR----MTLA----DDVNLEE 388 (446)
Q Consensus 328 ~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~----~~~~----~~~~l~~ 388 (446)
..++++|++||..- .+...|.. |+. .+.+..|...+|.+ ++..++.. .+.. .+..+..
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 23789999998732 24444544 553 56677777777765 33333332 2211 2223566
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHH
Q 013281 389 FVMTKDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 389 la~~t~g~s~~di~~l~~~A~~~Al 413 (446)
|..+..-.+.++|++++++|...+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 6666665688999999999887764
No 157
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.45 E-value=2.5e-12 Score=138.44 Aligned_cols=136 Identities=23% Similarity=0.302 Sum_probs=89.7
Q ss_pred eEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc----CC------------CCCCCeEEEEEeCCC--CCCChhh
Q 013281 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GF------------DSRGDVKVILATNRI--ESLDPAL 347 (446)
Q Consensus 286 ~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~~------------~~~~~v~vI~atn~~--~~ld~al 347 (446)
++|||||++.| ..+.|..|.++|+.-. +. ....++++|+++|.. ..++|++
T Consensus 219 GtL~Ldei~~L-----------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l 287 (608)
T TIGR00764 219 GVLYIDEIKTM-----------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPAL 287 (608)
T ss_pred CEEEEEChHhC-----------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHH
Confidence 58888888888 5668888888886421 10 012378999999974 5789999
Q ss_pred cCCCcee---eEEEcCC--C-CHHHHHHHHHHH---HccCCCCCccC---HHHHHHh---CC------CCcHHHHHHHHH
Q 013281 348 LRPGRID---RKIEFPL--P-DIKTRRRIFQIH---TSRMTLADDVN---LEEFVMT---KD------EFSGADIKAICT 406 (446)
Q Consensus 348 ~r~gRf~---~~i~~~~--P-~~~er~~Il~~~---~~~~~~~~~~~---l~~la~~---t~------g~s~~di~~l~~ 406 (446)
++ ||+ ..+.|+. | +.+.+.++++.. +.+.......+ +..|... .. -.+.++|.++|+
T Consensus 288 ~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 288 RS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred HH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 88 998 6666643 3 445555444432 22221111222 3333321 11 135799999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 013281 407 EAGLLALRERRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 407 ~A~~~Al~~~~~~It~~d~~~A~~~v~~ 434 (446)
+|...|..++...|+.+|+.+|++...+
T Consensus 366 ~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 366 AAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 9988888888899999999999886544
No 158
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.45 E-value=1.1e-12 Score=139.44 Aligned_cols=211 Identities=18% Similarity=0.258 Sum_probs=135.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSE 260 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~ 260 (446)
.....+|++++|.+..++++.+.+... ......|||+|++||||+++|++++.... .+|+.++|+.
T Consensus 197 ~~~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~ 265 (520)
T PRK10820 197 VNDDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCAS 265 (520)
T ss_pred ccccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEecccc
Confidence 345679999999999999988877652 22355699999999999999999988653 5899999987
Q ss_pred hhhhh-----cCCch-------HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC--C-
Q 013281 261 LIQKY-----LGDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--F- 325 (446)
Q Consensus 261 l~~~~-----~g~~~-------~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~- 325 (446)
+.... .|... .....+|+.|. .++||||||+.| +...|..|+.+++.-.. .
T Consensus 266 ~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 266 IPDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred CCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCC
Confidence 64321 12111 01123455443 489999999999 67889999999875210 0
Q ss_pred ---CCCCCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHc----cCCCC-CccC-
Q 013281 326 ---DSRGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTS----RMTLA-DDVN- 385 (446)
Q Consensus 326 ---~~~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~----~~~~~-~~~~- 385 (446)
....+++||+||+..- .+.+.|.. |+. .+.+..|...+|.+ ++..++. +.... ..+.
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 1124689999997632 24455555 654 46677777777764 2233332 22221 1222
Q ss_pred --HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 013281 386 --LEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425 (446)
Q Consensus 386 --l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~ 425 (446)
+..|..+.+-.+.++|++++.+|...+ ....|+.+|+
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 445555544446778888888776643 2334555553
No 159
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.45 E-value=7.1e-13 Score=144.48 Aligned_cols=212 Identities=20% Similarity=0.298 Sum_probs=138.2
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhh
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQ 263 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~ 263 (446)
..+|++++|.+..++++.+.+... ......|||+|++||||+++|++|++... .+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457999999999999988888763 23455799999999999999999999764 6999999987642
Q ss_pred -----hhcCCc----hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC--CC----C
Q 013281 264 -----KYLGDG----PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF--DS----R 328 (446)
Q Consensus 264 -----~~~g~~----~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~--~~----~ 328 (446)
..+|.. .......|+.| ..++||||||+.| ....|..|+.+|+.-... .. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 122211 00001123333 3589999999999 678899999998642211 00 1
Q ss_pred CCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHccC----CCC---CccCHHHHH
Q 013281 329 GDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSRM----TLA---DDVNLEEFV 390 (446)
Q Consensus 329 ~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~~----~~~---~~~~l~~la 390 (446)
.++++|+||+..- .+.+.|.. |+. .+.+..|...+|.+ ++..++... ... .+..+..|.
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 2688999998631 23333333 442 56677777777754 334443322 111 223355666
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 391 MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 391 ~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
.+..-.+.++|+++++.|...+ ....|+.+|+...+
T Consensus 533 ~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred cCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 6665557888888888877653 34467777776554
No 160
>PRK09087 hypothetical protein; Validated
Probab=99.45 E-value=5.2e-12 Score=120.08 Aligned_cols=172 Identities=21% Similarity=0.224 Sum_probs=115.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCC
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~ 305 (446)
..++||||+|+|||+|++++++..++.+ ++...+...+ +..... .+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSDA-----------ANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchHH-----------HHhhhc---CeEEEECCCCCCC-------
Confidence 3599999999999999999998876553 3333322211 111111 5899999997721
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---CCChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCC
Q 013281 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE---SLDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTL 380 (446)
Q Consensus 306 ~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~ 380 (446)
+ +..+..+++.+.. .+..+||+++..+. ...+++++ |+. ..+++..|+.+++..+++.++....+
T Consensus 102 --~---~~~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 --D---ETGLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred --C---HHHHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1 3446666665532 23444444443333 23678887 774 69999999999999999999877554
Q ss_pred C-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013281 381 A-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 381 ~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v 432 (446)
. ++..++.|+....+ +.+.+..++......++..+ ..||...+.++++.+
T Consensus 172 ~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 4 33446778887775 66667766667666666655 458999988888764
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=4.3e-12 Score=141.69 Aligned_cols=167 Identities=24% Similarity=0.372 Sum_probs=118.1
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCCC----CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK----PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI 262 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~----~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~ 262 (446)
...|+|.+.+++.+...|... ..|+. |...+||+||||||||++|+++|+.+ +.+|++++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 456899999999999999763 11222 22358999999999999999999976 4579999998875
Q ss_pred hh-----hcCCchHHH-----HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC------
Q 013281 263 QK-----YLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------ 326 (446)
Q Consensus 263 ~~-----~~g~~~~~v-----~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------ 326 (446)
.. .+|..+..+ ..+....+....+||||||++.+ +...+..|+++++.-.-.+
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEE
Confidence 42 122221111 11222333344589999999988 6778899999886421111
Q ss_pred CCCCeEEEEEeCCC-------------------------CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc
Q 013281 327 SRGDVKVILATNRI-------------------------ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (446)
Q Consensus 327 ~~~~v~vI~atn~~-------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~ 377 (446)
.-.+.+||+|||.. ..+.|+|+. |++..+.|.+++.+....|++.++..
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 11356799999872 135577887 99999999999999999988877654
No 162
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.44 E-value=4.8e-12 Score=130.53 Aligned_cols=216 Identities=16% Similarity=0.137 Sum_probs=134.2
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechh-hhhhhcCC
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSE-LIQKYLGD 268 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~-l~~~~~g~ 268 (446)
.|+|.+++++.+..++.. ..+|||+||||||||++|+++|..+.. +|..+.+.- .....+|.
T Consensus 21 ~i~gre~vI~lll~aala---------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hccCcHHHHHHHHHHHcc---------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 368889888888777654 567999999999999999999997653 444433321 11122221
Q ss_pred c-hHHH--HHHHHHHhhc---CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc----CCCCCCC-eEEEEEe
Q 013281 269 G-PKLV--RELFRVADDL---SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GFDSRGD-VKVILAT 337 (446)
Q Consensus 269 ~-~~~v--~~lf~~a~~~---~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~~~~~~~-v~vI~at 337 (446)
. -... ..-|...... ...+||+|||..+ +...|..|++.+++-. +....-+ .++++||
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 1 0000 1112211110 1249999999877 6778999999997643 1111112 3445566
Q ss_pred CCCC---CCChhhcCCCceeeEEEcCCCC-HHHHHHHHHHHHcc--CCCC--CccC-----------------------H
Q 013281 338 NRIE---SLDPALLRPGRIDRKIEFPLPD-IKTRRRIFQIHTSR--MTLA--DDVN-----------------------L 386 (446)
Q Consensus 338 n~~~---~ld~al~r~gRf~~~i~~~~P~-~~er~~Il~~~~~~--~~~~--~~~~-----------------------l 386 (446)
|... ...++++. ||-..+.+|+|+ .++..+++...... .... .-+. +
T Consensus 155 N~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI 232 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELI 232 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHH
Confidence 6422 12348888 998899999997 45557777654221 1110 0011 1
Q ss_pred HHHHHh---C---CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 013281 387 EEFVMT---K---DEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 387 ~~la~~---t---~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~ 436 (446)
..|+.. + ...|++--.++++.|...|+..++..|+.+|+. .+..++.+.
T Consensus 233 ~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 233 FQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 123321 1 226888888899999999999999999999999 666665543
No 163
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.44 E-value=9.2e-12 Score=126.25 Aligned_cols=192 Identities=21% Similarity=0.304 Sum_probs=136.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCccccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~-----~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~ 299 (446)
-..++||||.|+|||+|++|+++... +.++++....+.+.++......-.+-|.... .-.+|+||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 44699999999999999999999763 4688888888877766444333334455544 4479999999999543
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCC---CChhhcCCCcee--eEEEcCCCCHHHHHHHHHH
Q 013281 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQI 373 (446)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~-~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~ 373 (446)
...+..+..+++.+-. .+. .+|+|+.+ |.. +.+.|.+ ||. ..+.+.+|+.+.|..||+.
T Consensus 191 ---------~~~qeefFh~FN~l~~---~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 191 ---------ERTQEEFFHTFNALLE---NGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred ---------hhHHHHHHHHHHHHHh---cCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHH
Confidence 2346667777766532 233 46666644 444 5588888 875 4888999999999999999
Q ss_pred HHccCCCCC-ccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhh
Q 013281 374 HTSRMTLAD-DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 374 ~~~~~~~~~-~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~ 435 (446)
.....++.- +.-+..++...+. +.+++..+++.....|...++ .||.+.+.++++.....
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 877666553 3335666766664 788888888888777776655 67777777777666554
No 164
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.43 E-value=6.3e-12 Score=132.20 Aligned_cols=212 Identities=23% Similarity=0.294 Sum_probs=145.8
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhh----hh-------------------CCCCCceEEEEcCCC
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYE----DI-------------------GIKPPKGVILYGEPG 235 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~----~~-------------------g~~~~~~vLL~GppG 235 (446)
.+|++++.+.+|.|+.|-+.+-+.+.-++..+ .+.+|. ++ +-++.+-+||+||||
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W--D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW--DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhh--cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 37899999999999999999998888888764 344443 11 112234588999999
Q ss_pred CcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHh--------hcCCeEEEEcCcccccccccCCCCCC
Q 013281 236 TGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD--------DLSPSIVFIDEIDAVGTKRYDAHSGG 307 (446)
Q Consensus 236 tGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~--------~~~p~IL~IDEid~l~~~r~~~~~~~ 307 (446)
-||||||+.||+++|..++.|++|+-.. ...++..+..|- ..+|.+|+|||||--
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----------- 399 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----------- 399 (877)
T ss_pred CChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------
Confidence 9999999999999999999999987322 223333222221 136889999999754
Q ss_pred cHHHHHHHHHHHHHh----cCCCC---------CC---CeEEEEEeCCCCCCChhhcCCC-ceeeEEEcCCCCHHHHHHH
Q 013281 308 EREIQRTMLELLNQL----DGFDS---------RG---DVKVILATNRIESLDPALLRPG-RIDRKIEFPLPDIKTRRRI 370 (446)
Q Consensus 308 ~~~~~~~l~~lL~~l----d~~~~---------~~---~v~vI~atn~~~~ld~al~r~g-Rf~~~i~~~~P~~~er~~I 370 (446)
......+++.++..- .|-.. ++ .-.|||.||.. .-|+|+ |. -|...+.|..|...-..+-
T Consensus 400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR-~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 400 PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALR-PLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhh-hcccceEEEEecCCChhHHHHH
Confidence 456677777777621 11100 00 13588999964 345664 33 3677999999998888888
Q ss_pred HHHHHccCCCCCc-cCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 013281 371 FQIHTSRMTLADD-VNLEEFVMTKDEFSGADIKAICTEAGLLALRER 416 (446)
Q Consensus 371 l~~~~~~~~~~~~-~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~ 416 (446)
|+..+...++..+ -.+..|+..++ .||++.++....+|....
T Consensus 477 L~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 477 LNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLASNVD 519 (877)
T ss_pred HHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhcc
Confidence 8877766655422 23555555554 599999988888776654
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.43 E-value=4.2e-12 Score=141.71 Aligned_cols=199 Identities=21% Similarity=0.295 Sum_probs=133.0
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCC----CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK----PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ 263 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~----~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~ 263 (446)
..|+|++.+++.+..++... +.|+. |...+||+||+|||||++|+++|+.+ ..++++++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 34899999999999988752 12222 22358999999999999999999987 36899999887643
Q ss_pred -----hhcCCchHH-----HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC------C
Q 013281 264 -----KYLGDGPKL-----VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------S 327 (446)
Q Consensus 264 -----~~~g~~~~~-----v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~ 327 (446)
+.+|..+.. ...+.+..+.+..+||+|||+|.+ +++++..|++++++-.-.+ .
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEe
Confidence 223322111 123455555556689999999998 6778888888887521111 1
Q ss_pred CCCeEEEEEeCCCCC-------------------------------------CChhhcCCCceeeEEEcCCCCHHHHHHH
Q 013281 328 RGDVKVILATNRIES-------------------------------------LDPALLRPGRIDRKIEFPLPDIKTRRRI 370 (446)
Q Consensus 328 ~~~v~vI~atn~~~~-------------------------------------ld~al~r~gRf~~~i~~~~P~~~er~~I 370 (446)
-.+++||+|||.... +.|.++. |++.+|.|.+.+.++...|
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHH
Confidence 247899999985210 2355666 9999999999999999999
Q ss_pred HHHHHccC-------CCC---CccCHHHHHHhC--CCCcHHHHHHHHHHHHH
Q 013281 371 FQIHTSRM-------TLA---DDVNLEEFVMTK--DEFSGADIKAICTEAGL 410 (446)
Q Consensus 371 l~~~~~~~-------~~~---~~~~l~~la~~t--~g~s~~di~~l~~~A~~ 410 (446)
+...+..+ ++. .+...+.|+... ..+-.+.|+.+++.-..
T Consensus 728 v~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~ 779 (821)
T CHL00095 728 AEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLE 779 (821)
T ss_pred HHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Confidence 88776542 111 111234555542 23335666666554443
No 166
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.42 E-value=5.3e-12 Score=132.61 Aligned_cols=212 Identities=21% Similarity=0.297 Sum_probs=135.9
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----------------
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----------------- 250 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~----------------- 250 (446)
..|+|+.|.+.+++.+.-++. ...+++|+||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 478999999888766555443 356899999999999999999987431
Q ss_pred -----------CcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHH
Q 013281 251 -----------ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (446)
Q Consensus 251 -----------~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL 319 (446)
.||...+++......+|.+...-...+..|. .++|||||++.+ ....+..|.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 2333333322222222322111122344443 389999999998 667888888888
Q ss_pred HHhc------C--CCCCCCeEEEEEeCCC-----C------------------CCChhhcCCCceeeEEEcCCCCHHHH-
Q 013281 320 NQLD------G--FDSRGDVKVILATNRI-----E------------------SLDPALLRPGRIDRKIEFPLPDIKTR- 367 (446)
Q Consensus 320 ~~ld------~--~~~~~~v~vI~atn~~-----~------------------~ld~al~r~gRf~~~i~~~~P~~~er- 367 (446)
+.-. + .....++.+|+++|.- . .+...|+. |||..+.++.++..+.
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 6421 0 0112478999999862 1 37778888 9999999997654322
Q ss_pred ------------HHHHHH------HHccC---CCCCccCH----------------HHHHHhCCCCcHHHHHHHHHHHHH
Q 013281 368 ------------RRIFQI------HTSRM---TLADDVNL----------------EEFVMTKDEFSGADIKAICTEAGL 410 (446)
Q Consensus 368 ------------~~Il~~------~~~~~---~~~~~~~l----------------~~la~~t~g~s~~di~~l~~~A~~ 410 (446)
..+.+. .+... .......- -.-+....++|.+-...+++-|..
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 222211 11111 11111111 111222345899999999999999
Q ss_pred HHHHhCCCCccHHHHHHHHH
Q 013281 411 LALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 411 ~Al~~~~~~It~~d~~~A~~ 430 (446)
+|-.+++..|+.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999975
No 167
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.40 E-value=1.3e-11 Score=124.07 Aligned_cols=215 Identities=26% Similarity=0.256 Sum_probs=136.0
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh--hcCCch
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK--YLGDGP 270 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~--~~g~~~ 270 (446)
++|.++++..+..++.. ..++||.||||||||++|+++|..++.+|+++.|...... .+|...
T Consensus 26 ~~g~~~~~~~~l~a~~~---------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLA---------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHc---------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 67888888777776655 5679999999999999999999999999999999754332 122211
Q ss_pred HHHH----HHHHHHhh--cCC--eEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc----C---CCCCCCeEEEE
Q 013281 271 KLVR----ELFRVADD--LSP--SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----G---FDSRGDVKVIL 335 (446)
Q Consensus 271 ~~v~----~lf~~a~~--~~p--~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~---~~~~~~v~vI~ 335 (446)
-... ..|..... ... +|+|+|||+.. ...++..|++.|++.. + +.-...++||+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 1100 00000000 001 49999999888 6788999999998732 1 22345788888
Q ss_pred EeC-----CCCCCChhhcCCCceeeEEEcCCC-CHHHHHHHHHHHHccCC------CCCccCH-----------------
Q 013281 336 ATN-----RIESLDPALLRPGRIDRKIEFPLP-DIKTRRRIFQIHTSRMT------LADDVNL----------------- 386 (446)
Q Consensus 336 atn-----~~~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~~~~~~------~~~~~~l----------------- 386 (446)
|+| ....++.++++ ||...+.++.| +..+...++........ ...-+..
T Consensus 160 T~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSD 237 (329)
T ss_pred ccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchH
Confidence 889 34568999999 99889999999 55445544443332110 0000111
Q ss_pred ------HHHHHhC-------CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhh
Q 013281 387 ------EEFVMTK-------DEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 387 ------~~la~~t-------~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~ 435 (446)
..+...+ .|.+++...+++..+...|...++..+..+|+......++..
T Consensus 238 ~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~ 299 (329)
T COG0714 238 EVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAH 299 (329)
T ss_pred HHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhh
Confidence 1111111 122455556666666667777777778888877666555543
No 168
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.40 E-value=4.8e-11 Score=115.97 Aligned_cols=192 Identities=17% Similarity=0.204 Sum_probs=121.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-cEEE--E-ec----hhhhh---hhcCCc-----h-HHHHHHH----HHHhhcC
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSA-TFLR--V-VG----SELIQ---KYLGDG-----P-KLVRELF----RVADDLS 284 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~-~~i~--v-~~----s~l~~---~~~g~~-----~-~~v~~lf----~~a~~~~ 284 (446)
..++|+||+|+|||++++.+++.+.. .+.. + ++ .++.. ...|.. . .....+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998763 2221 1 11 11111 111211 1 1112221 2233456
Q ss_pred CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC--CCCC----ChhhcCCCceeeEEE
Q 013281 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR--IESL----DPALLRPGRIDRKIE 358 (446)
Q Consensus 285 p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~--~~~l----d~al~r~gRf~~~i~ 358 (446)
+.+|+|||++.+ .......+..+.+. .. .....+.|+++... .+.+ ...+.+ |+...++
T Consensus 124 ~~vliiDe~~~l-----------~~~~~~~l~~l~~~-~~-~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 124 RALLVVDEAQNL-----------TPELLEELRMLSNF-QT-DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred CeEEEEECcccC-----------CHHHHHHHHHHhCc-cc-CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 689999999998 22233333333221 11 11223444555432 1111 123444 7778899
Q ss_pred cCCCCHHHHHHHHHHHHccCCC-----CCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013281 359 FPLPDIKTRRRIFQIHTSRMTL-----ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 359 ~~~P~~~er~~Il~~~~~~~~~-----~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~ 433 (446)
+++.+.++...++...+..... -.+..++.|+..+.|. ++.|..+|..|...|..++...|+.+++..++..+-
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 9999999999999988765432 1334577888889885 677999999999999999999999999999988753
No 169
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=1.2e-11 Score=124.70 Aligned_cols=188 Identities=18% Similarity=0.152 Sum_probs=125.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEE--
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------FLRV-- 256 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------~i~v-- 256 (446)
.+..+.+|+|.+.+++.+..++... +.+..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4578999999999999999999862 346679999999999999999999987541 1100
Q ss_pred --ech---hhhhh----h--c-------------CCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCc
Q 013281 257 --VGS---ELIQK----Y--L-------------GDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGE 308 (446)
Q Consensus 257 --~~s---~l~~~----~--~-------------g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~ 308 (446)
.|. .+... + + .-.-..++.+.+... .....||+|||+|.+ +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------N 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------C
Confidence 111 11000 0 0 001233343333222 234569999999999 5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHH
Q 013281 309 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEE 388 (446)
Q Consensus 309 ~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~ 388 (446)
...+..|+..|++ ...++.+|+.|+.++.+.|.+++ |+ ..+.|++|+.++...++........+ ++..+..
T Consensus 155 ~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~ 225 (351)
T PRK09112 155 RNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEA 225 (351)
T ss_pred HHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHH
Confidence 5566666666654 23567777778888888899987 88 59999999999999999874322221 1223556
Q ss_pred HHHhCCCCcHHHHHHHHH
Q 013281 389 FVMTKDEFSGADIKAICT 406 (446)
Q Consensus 389 la~~t~g~s~~di~~l~~ 406 (446)
++..+.| +++...+++.
T Consensus 226 i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 226 LLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHHcCC-CHHHHHHHHh
Confidence 6666665 6655555553
No 170
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.39 E-value=1.5e-12 Score=118.02 Aligned_cols=122 Identities=26% Similarity=0.444 Sum_probs=85.2
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhh-----
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK----- 264 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~----- 264 (446)
|+|.+..++++.+.+... +..+..|||+|++||||+++|++|++... .||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 578888888888888763 23457899999999999999999999764 59999999876432
Q ss_pred hcCCch-------HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC--CC----CCCCe
Q 013281 265 YLGDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--FD----SRGDV 331 (446)
Q Consensus 265 ~~g~~~-------~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~~----~~~~v 331 (446)
..|... .....+|+.|.. ++||||||+.| ....|..|+.+|+.-.- .. ...++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 122110 112256666655 89999999999 78899999999985321 11 12379
Q ss_pred EEEEEeCC
Q 013281 332 KVILATNR 339 (446)
Q Consensus 332 ~vI~atn~ 339 (446)
+||++|+.
T Consensus 136 RiI~st~~ 143 (168)
T PF00158_consen 136 RIIASTSK 143 (168)
T ss_dssp EEEEEESS
T ss_pred eEEeecCc
Confidence 99999986
No 171
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.39 E-value=6.7e-12 Score=137.84 Aligned_cols=197 Identities=23% Similarity=0.337 Sum_probs=132.3
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK 264 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~ 264 (446)
..|.+++|.+..++.+.+.+... .....+|||+|++|||||++|++|+... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 57889999999999999888762 2345679999999999999999999865 469999999876432
Q ss_pred -----hcCCc-------hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC------CC
Q 013281 265 -----YLGDG-------PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG------FD 326 (446)
Q Consensus 265 -----~~g~~-------~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~------~~ 326 (446)
..|.. .......|+.+. .++||||||+.+ ....|..|+.+|+.-.. ..
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 11210 011123344443 489999999999 77889999999875321 01
Q ss_pred CCCCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHcc----CCCC----CccCHH
Q 013281 327 SRGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSR----MTLA----DDVNLE 387 (446)
Q Consensus 327 ~~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~----~~~~----~~~~l~ 387 (446)
...++++|++|+..- .+...+.. |+. .+.+..|...+|.+ +++.++.. +... ....+.
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 124789999998632 23333333 443 56677788888766 33444332 2211 223356
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHH
Q 013281 388 EFVMTKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 388 ~la~~t~g~s~~di~~l~~~A~~~A 412 (446)
.|..+..-.+.++|++++.+|...+
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 6666666568899999999888654
No 172
>PHA02244 ATPase-like protein
Probab=99.38 E-value=1.2e-11 Score=123.52 Aligned_cols=125 Identities=26% Similarity=0.317 Sum_probs=86.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh---hcCCchHHHHHHHHHHhhcCCeEEEEcCccccccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK---YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~---~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~ 301 (446)
..+|||+||||||||++|+++|..++.+|+.+++..-... ++.........-|-.|.. .+++|||||++.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a----- 192 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS----- 192 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcC-----
Confidence 5579999999999999999999999999999874310001 111111111122333332 4589999999988
Q ss_pred CCCCCCcHHHHHHHHHHHHHh-----cC-CCCCCCeEEEEEeCCC-----------CCCChhhcCCCceeeEEEcCCCCH
Q 013281 302 DAHSGGEREIQRTMLELLNQL-----DG-FDSRGDVKVILATNRI-----------ESLDPALLRPGRIDRKIEFPLPDI 364 (446)
Q Consensus 302 ~~~~~~~~~~~~~l~~lL~~l-----d~-~~~~~~v~vI~atn~~-----------~~ld~al~r~gRf~~~i~~~~P~~ 364 (446)
..+.+..|..++... ++ .....++.+|+|+|.. ..+++++++ ||. .|+|..|+.
T Consensus 193 ------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 193 ------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred ------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 566777777777521 11 1123578999999973 467899998 995 799999984
No 173
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=2.1e-11 Score=123.72 Aligned_cols=184 Identities=17% Similarity=0.124 Sum_probs=123.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE------------
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF------------ 253 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~------------ 253 (446)
.+.++.+|+|.+.+++.|..++... +.+..+||+||+|+||+++|.++|+.+-+.-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4578999999999999999998872 4567899999999999999999999763210
Q ss_pred -EEE--ech--hhhh-h------hc-----C--------CchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCC
Q 013281 254 -LRV--VGS--ELIQ-K------YL-----G--------DGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAH 304 (446)
Q Consensus 254 -i~v--~~s--~l~~-~------~~-----g--------~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~ 304 (446)
+.+ .|. ..+. . ++ + -.-..++++...+. ...+.||+|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 000 010 0000 0 00 0 11233455444433 235779999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCcc
Q 013281 305 SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV 384 (446)
Q Consensus 305 ~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~ 384 (446)
+...+..|+..+++. ..++++|++|+.++.+.+.+++ |+. .+.|++|+.++..+++...... ..+.
T Consensus 154 ---~~~aanaLLK~LEep-----p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~ 219 (365)
T PRK07471 154 ---NANAANALLKVLEEP-----PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDD 219 (365)
T ss_pred ---CHHHHHHHHHHHhcC-----CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHH
Confidence 566677777777642 4567888999999889888877 884 8999999999999988875421 1111
Q ss_pred CHHHHHHhCCCCcHHHHHHH
Q 013281 385 NLEEFVMTKDEFSGADIKAI 404 (446)
Q Consensus 385 ~l~~la~~t~g~s~~di~~l 404 (446)
.+..++..+.| ++....++
T Consensus 220 ~~~~l~~~s~G-sp~~Al~l 238 (365)
T PRK07471 220 PRAALAALAEG-SVGRALRL 238 (365)
T ss_pred HHHHHHHHcCC-CHHHHHHH
Confidence 22456666665 44443333
No 174
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=2.2e-11 Score=121.45 Aligned_cols=169 Identities=17% Similarity=0.247 Sum_probs=117.2
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------cEEEEechh
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------TFLRVVGSE 260 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--------~~i~v~~s~ 260 (446)
+|++|+|.+.+++.+...+..- ..+..+||+||+|+|||++|+++|+.+-+ .+..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5889999999999999998752 34667899999999999999999997633 222222210
Q ss_pred hhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 013281 261 LIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~a 336 (446)
+. ...-..++++.+.+. .....|++||++|.+ +.+.+..|+..|++ +..++.+|++
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 01 112234555555332 223469999999999 55556666666553 3567888888
Q ss_pred eCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCC
Q 013281 337 TNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 395 (446)
Q Consensus 337 tn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g 395 (446)
|+.++.+.|.+++ |+. .++|+.|+.++...++....... .+..+..++..+.|
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g 182 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDG 182 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCC
Confidence 8888999999988 884 89999999999888887654321 12234556666655
No 175
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.36 E-value=1.8e-11 Score=129.76 Aligned_cols=226 Identities=18% Similarity=0.174 Sum_probs=138.5
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----echhhhhhhcC
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV----VGSELIQKYLG 267 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v----~~s~l~~~~~g 267 (446)
+|.|.+.++..|.-.+..... +..-....+....+|||+|+||||||++|+++++......+.. ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 477888776665544433100 0000111223334799999999999999999999876432221 22222111000
Q ss_pred C---chHHH-HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc------CCC--CCCCeEEEE
Q 013281 268 D---GPKLV-RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GFD--SRGDVKVIL 335 (446)
Q Consensus 268 ~---~~~~v-~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~vI~ 335 (446)
+ +...+ ...+.. ...++++|||++.+ ....+..|.+.+++-. |.. ...++.||+
T Consensus 283 ~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 283 DPETREFTLEGGALVL---ADNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred ccCcceEEecCccEEe---cCCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 0 00000 011111 23479999999999 6677888888886421 111 124689999
Q ss_pred EeCCCC-------------CCChhhcCCCceeeEEEc-CCCCHHHHHHHHHHHHccCC---------CCCccC-------
Q 013281 336 ATNRIE-------------SLDPALLRPGRIDRKIEF-PLPDIKTRRRIFQIHTSRMT---------LADDVN------- 385 (446)
Q Consensus 336 atn~~~-------------~ld~al~r~gRf~~~i~~-~~P~~~er~~Il~~~~~~~~---------~~~~~~------- 385 (446)
|+|..+ .+++++++ |||..+.+ ..|+.+...+|++..+.... .....+
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~y 426 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKY 426 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHH
Confidence 999752 58999999 99875554 67888888888876432110 000011
Q ss_pred ----------------HHHHH-----Hh----------CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 013281 386 ----------------LEEFV-----MT----------KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 386 ----------------l~~la-----~~----------t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~ 434 (446)
.+.|. .+ ..+.|++.+.++++.|...|..+.+..|+.+|+..|++-+..
T Consensus 427 i~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 427 IAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 11111 11 124578899999999999999999999999999999987654
No 176
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.34 E-value=3.5e-11 Score=129.39 Aligned_cols=197 Identities=20% Similarity=0.255 Sum_probs=132.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhhhhhcCCch--HHH--------HHHHHHHhhcCCeEEEEcCc
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQKYLGDGP--KLV--------RELFRVADDLSPSIVFIDEI 293 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~~~~~g~~~--~~v--------~~lf~~a~~~~p~IL~IDEi 293 (446)
.+|||.|+||||||++|++++..+.. +|+++.........+|... ..+ ..++.. ...++||||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~---A~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE---APRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee---CCCCcEeccch
Confidence 47999999999999999999998764 6888875333233333210 000 001111 22369999999
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHHhc------CCC--CCCCeEEEEEeCCCC---CCChhhcCCCceeeEEEcC-C
Q 013281 294 DAVGTKRYDAHSGGEREIQRTMLELLNQLD------GFD--SRGDVKVILATNRIE---SLDPALLRPGRIDRKIEFP-L 361 (446)
Q Consensus 294 d~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~vI~atn~~~---~ld~al~r~gRf~~~i~~~-~ 361 (446)
+.+ +...|..|+++|++-. |.. ...++.||+++|..+ .+.++|+. ||...+.+. .
T Consensus 94 ~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 94 NLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred hhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 999 6788999999887432 211 124689999998865 78899998 999877776 4
Q ss_pred CCHHHHHHHHHHHHccCC----C---------------C-----CccCHHHHHHhC--CCCc-HHHHHHHHHHHHHHHHH
Q 013281 362 PDIKTRRRIFQIHTSRMT----L---------------A-----DDVNLEEFVMTK--DEFS-GADIKAICTEAGLLALR 414 (446)
Q Consensus 362 P~~~er~~Il~~~~~~~~----~---------------~-----~~~~l~~la~~t--~g~s-~~di~~l~~~A~~~Al~ 414 (446)
|+.++|.+|++.+..... . . .+..+..|+... .|.+ .+--..+++.|...|..
T Consensus 161 ~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal 240 (589)
T TIGR02031 161 ASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAAL 240 (589)
T ss_pred CCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH
Confidence 677888888877552110 0 0 111122222221 2332 44455677888888999
Q ss_pred hCCCCccHHHHHHHHHHHHhhhcc
Q 013281 415 ERRMKVTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 415 ~~~~~It~~d~~~A~~~v~~~~~~ 438 (446)
+++..|+.+|+..|..-++.+...
T Consensus 241 ~gr~~V~~~Dv~~a~~lvl~hR~~ 264 (589)
T TIGR02031 241 HGRTEVTEEDLKLAVELVLLPRAT 264 (589)
T ss_pred hCCCCCCHHHHHHHHHHHhhhhcc
Confidence 999999999999999999976553
No 177
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.32 E-value=8.7e-11 Score=112.13 Aligned_cols=134 Identities=25% Similarity=0.277 Sum_probs=98.6
Q ss_pred CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-------------CCCCChhhcCC
Q 013281 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-------------IESLDPALLRP 350 (446)
Q Consensus 284 ~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~-------------~~~ld~al~r~ 350 (446)
-|+||||||++.| +-+....|...|+ +.-.-+||+|||+ |.-+++.|+.
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 4889999999988 4444444444332 2334568888886 3456777887
Q ss_pred CceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 351 GRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 351 gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
|+- .|..-+++.++.++|++++....++. .+..+..|+.....-|-+...+++.-|...|-..++..|..+|++++-
T Consensus 358 -Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 773 66777788899999999998776665 344577777776666777788889999999999999999999999987
Q ss_pred HHHHhhhc
Q 013281 430 EKVMFKKK 437 (446)
Q Consensus 430 ~~v~~~~~ 437 (446)
+-.+..+.
T Consensus 436 ~Lf~Dak~ 443 (456)
T KOG1942|consen 436 ELFLDAKR 443 (456)
T ss_pred HHHHhchh
Confidence 76665543
No 178
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.32 E-value=1e-11 Score=115.05 Aligned_cols=152 Identities=20% Similarity=0.252 Sum_probs=106.7
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-C----CcEE
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-S----ATFL 254 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-~----~~~i 254 (446)
.|++++.+..+.||+|.++.+..+.-.... |- -.+++|.|||||||||-+.++|+++ | -.++
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~-----------gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKE-----------GN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHc-----------CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 388999999999999999999999887765 21 2369999999999999999999986 3 2456
Q ss_pred EEechhhhhhhcCCchHHHH---HHHHHHhhcC----CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC
Q 013281 255 RVVGSELIQKYLGDGPKLVR---ELFRVADDLS----PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (446)
Q Consensus 255 ~v~~s~l~~~~~g~~~~~v~---~lf~~a~~~~----p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 327 (446)
++++|+-.+ -..++ ..|..-+-.- ..||++||+|++ ....|+.|-+-++-.
T Consensus 83 ELNASdeRG------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiy----- 140 (333)
T KOG0991|consen 83 ELNASDERG------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIY----- 140 (333)
T ss_pred hccCccccc------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHH-----
Confidence 666665221 12233 3444433222 249999999999 344566666666543
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHH
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~ 369 (446)
....++++++|..+.+-..+.+ |+. .+.|...+..+...
T Consensus 141 S~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~ 179 (333)
T KOG0991|consen 141 SNTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILK 179 (333)
T ss_pred cccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHH
Confidence 2346789999998887777877 775 55566555555443
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=6.6e-11 Score=127.84 Aligned_cols=171 Identities=23% Similarity=0.311 Sum_probs=133.4
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcE
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~ 253 (446)
.+....++-++|.++.|.++.+.+... ..++-+|.|+||+|||.++..+|... +..+
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i 229 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRI 229 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEE
Confidence 344567888999999999999988873 34568899999999999999999864 3567
Q ss_pred EEEechhhhh--hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCe
Q 013281 254 LRVVGSELIQ--KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (446)
Q Consensus 254 i~v~~s~l~~--~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 331 (446)
+.++.+.+.. +|-|+.+..++.+........+.||||||||.+.+.....+ + .-+....|--.|. ++.+
T Consensus 230 ~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGeL 300 (786)
T COG0542 230 YSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGEL 300 (786)
T ss_pred EEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCCe
Confidence 8888887774 79999999999999999988889999999999976543221 1 2233344444443 6789
Q ss_pred EEEEEeCCC-----CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC
Q 013281 332 KVILATNRI-----ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (446)
Q Consensus 332 ~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~ 379 (446)
.+|+||... -.-|+||-| ||. .|.+.-|+.++-..||+-.-.++.
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE 350 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYE 350 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999532 246899999 996 899999999999999986555433
No 180
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.31 E-value=5.6e-11 Score=117.86 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=63.5
Q ss_pred CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC------------CCCCChhhcCCCc
Q 013281 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR------------IESLDPALLRPGR 352 (446)
Q Consensus 285 p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~------------~~~ld~al~r~gR 352 (446)
|+||||||+|.| +-+....|...++. .-.-+||+|||+ |.-+|..|+. |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs------~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALES------ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTS------TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcC------CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 789999999999 66666666666642 234568899985 3457788888 8
Q ss_pred eeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHH
Q 013281 353 IDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEA 408 (446)
Q Consensus 353 f~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A 408 (446)
+ ..|...+++.++.++|++.++....+. .+..++.|+......|-+..-+|+.-|
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 8 488899999999999999999876654 223355555554444544444444433
No 181
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.31 E-value=9.3e-11 Score=108.19 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=97.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhcCCchHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRV 279 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~------------------------~i~v~~s~l~~~~~g~~~~~v~~lf~~ 279 (446)
.+..+|||||+|+|||++|+++++.+... |..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 45679999999999999999999987432 22221110 0 1122455555555
Q ss_pred Hhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceee
Q 013281 280 ADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDR 355 (446)
Q Consensus 280 a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~ 355 (446)
+.. ....||+|||+|.+ ....+..|+..++ . ...++.+|++|+.+..+.+++.+ |+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le---~--~~~~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLE---E--PPPNTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred HccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhc---C--CCCCeEEEEEECChHhChHHHHh--hcE-
Confidence 543 23569999999999 3444555555553 3 23467788888888899999988 874
Q ss_pred EEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCC
Q 013281 356 KIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 395 (446)
Q Consensus 356 ~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g 395 (446)
.+.|++|+.++...++..+ ++. +..+..++..+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999999888876 232 3346666666655
No 182
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=6.3e-12 Score=110.02 Aligned_cols=113 Identities=28% Similarity=0.360 Sum_probs=73.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh------hhcCC--chHHHHHHHHHHhhcCCeEEEEcCcccccc
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ------KYLGD--GPKLVRELFRVADDLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~------~~~g~--~~~~v~~lf~~a~~~~p~IL~IDEid~l~~ 298 (446)
+|+|+||||||||++|+.+|+.++.+++.+.++.... .+.-. ........+..+.. .+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999998876432 11100 00000000000111 4589999999988
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHhcCC-------C-CCC------CeEEEEEeCCCC----CCChhhcCCCce
Q 013281 299 KRYDAHSGGEREIQRTMLELLNQLDGF-------D-SRG------DVKVILATNRIE----SLDPALLRPGRI 353 (446)
Q Consensus 299 ~r~~~~~~~~~~~~~~l~~lL~~ld~~-------~-~~~------~v~vI~atn~~~----~ld~al~r~gRf 353 (446)
+.+++..|+.+++.-... . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 567788888888642111 0 011 389999999988 89999998 87
No 183
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.29 E-value=1.8e-10 Score=112.20 Aligned_cols=206 Identities=17% Similarity=0.261 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEechhhh-----
Q 013281 197 DAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---------ATFLRVVGSELI----- 262 (446)
Q Consensus 197 ~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---------~~~i~v~~s~l~----- 262 (446)
..+.+.|.+.+..|- .....++||+|++|.|||++++.+++... .|++.+....-.
T Consensus 43 ~~~L~~L~~Ll~~P~----------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 43 KEALDRLEELLEYPK----------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred HHHHHHHHHHHhCCc----------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 344455566565552 12234699999999999999999997542 367776553211
Q ss_pred -----hh----h-c-CCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCe
Q 013281 263 -----QK----Y-L-GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (446)
Q Consensus 263 -----~~----~-~-g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 331 (446)
.. + . ......-..+....+..++.+|+|||++.++.. +..-|+.++.+|..+.+ .-++
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~N---eL~i 181 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGN---ELQI 181 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhh---ccCC
Confidence 10 1 1 111222334456666778899999999998532 33457777777777643 2334
Q ss_pred EEEEEeCC----CCCCChhhcCCCceeeEEEcCCC-CHHHHHHHHHHHHccCCCCCc--cC----HHHHHHhCCCCcHHH
Q 013281 332 KVILATNR----IESLDPALLRPGRIDRKIEFPLP-DIKTRRRIFQIHTSRMTLADD--VN----LEEFVMTKDEFSGAD 400 (446)
Q Consensus 332 ~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~~~~~~~~~~--~~----l~~la~~t~g~s~~d 400 (446)
.+|+.... .-.-|+.+-+ ||. .+.+|.- ..++...++..+...+++... .. ...|...+.|. .++
T Consensus 182 piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~ 257 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGE 257 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHH
Confidence 44444321 2234677766 996 5666642 334566788887777766532 22 24555667774 568
Q ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHH
Q 013281 401 IKAICTEAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 401 i~~l~~~A~~~Al~~~~~~It~~d~~~ 427 (446)
+..+++.|+..|++.+.+.||.+.+..
T Consensus 258 l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 258 LSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 999999999999999999999998875
No 184
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.28 E-value=4.5e-12 Score=117.27 Aligned_cols=122 Identities=21% Similarity=0.319 Sum_probs=70.4
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC------------------
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS------------------ 250 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~------------------ 250 (446)
.|+||.|++.++..+.-+... ..++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 378999999999999887775 46899999999999999999998442
Q ss_pred ----------CcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHH
Q 013281 251 ----------ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (446)
Q Consensus 251 ----------~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (446)
.||....-+.-....+|.+....-..+..|. .+|||+||+-.+ +..+.+.|.+-++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef-----------~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF-----------DRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS------------HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc-----------CHHHHHHHHHHHH
Confidence 1222222111111111211100011122222 279999999877 6667777777776
Q ss_pred HhcCC--------CCCCCeEEEEEeCC
Q 013281 321 QLDGF--------DSRGDVKVILATNR 339 (446)
Q Consensus 321 ~ld~~--------~~~~~v~vI~atn~ 339 (446)
.-.-. .-..++.+|+|+|.
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred CCeEEEEECCceEEEecccEEEEEecc
Confidence 43211 11236889999885
No 185
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.28 E-value=1.4e-10 Score=115.50 Aligned_cols=149 Identities=24% Similarity=0.354 Sum_probs=105.1
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------------------
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS--------------------- 250 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~--------------------- 250 (446)
+++|.+.+...+..++... + ..+..+||+||||||||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5678888888888887742 1 2344699999999999999999999876
Q ss_pred ---CcEEEEechhhhhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc
Q 013281 251 ---ATFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD 323 (446)
Q Consensus 251 ---~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 323 (446)
..|+.++.++....- .....++.+-...... ...||+|||+|.+ +...+..++..+.+
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--
Confidence 356677666543211 1234455544443332 3469999999999 45556666666653
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHH
Q 013281 324 GFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372 (446)
Q Consensus 324 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~ 372 (446)
...+..+|++||.+..+-+.+++ |+. .+.|++|+........+
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 35688999999999999999988 884 88888766555444443
No 186
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.6e-10 Score=115.11 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=124.3
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---------------- 252 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~---------------- 252 (446)
.|++|+|++.+++.+..++... +.+..+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999999872 346789999999999999999999976321
Q ss_pred --EEEEechhhh-h-----h---hcC--------CchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcH
Q 013281 253 --FLRVVGSELI-Q-----K---YLG--------DGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGER 309 (446)
Q Consensus 253 --~i~v~~s~l~-~-----~---~~g--------~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~ 309 (446)
++.+...... + . ..| -.-..++++...+.. ....|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 1211111000 0 0 000 011244555444432 24569999999999 55
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHH
Q 013281 310 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 389 (446)
Q Consensus 310 ~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~l 389 (446)
..+..|+..|++. . +.++|+.|+.++.+-|.+++ |+ ..+.|+.++.++..+++........ .+.+...+
T Consensus 139 ~aaNaLLK~LEEP-----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEEP-----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPEL 207 (314)
T ss_pred HHHHHHHHHHhCC-----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHH
Confidence 5666777776542 2 55788888899999999998 88 4899999999999999887643211 11224677
Q ss_pred HHhCCCCcHHHHHHHHH
Q 013281 390 VMTKDEFSGADIKAICT 406 (446)
Q Consensus 390 a~~t~g~s~~di~~l~~ 406 (446)
+....| +++...+++.
T Consensus 208 ~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 208 LALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHcCC-CHHHHHHHHH
Confidence 777776 5555555443
No 187
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.27 E-value=7.6e-11 Score=120.81 Aligned_cols=144 Identities=24% Similarity=0.373 Sum_probs=91.8
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--c-----EEEEec----
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--T-----FLRVVG---- 258 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~-----~i~v~~---- 258 (446)
++++.+.+..++.+...+.. .++++|+||||||||++|+.+|..+.. . ++.++.
T Consensus 174 l~d~~i~e~~le~l~~~L~~---------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI---------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc---------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 56677778888877776654 568999999999999999999998743 1 222221
Q ss_pred hhhhhhhc--CCc----hHHHHHHHHHHhhc--CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHH---------
Q 013281 259 SELIQKYL--GDG----PKLVRELFRVADDL--SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ--------- 321 (446)
Q Consensus 259 s~l~~~~~--g~~----~~~v~~lf~~a~~~--~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~--------- 321 (446)
.+++..+. +.+ ...+..++..|... .|.+||||||+..... .+...+..+|+.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~----------kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS----------KVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH----------Hhhhhhhhhccccccccccce
Confidence 23332221 111 12233445566543 4789999999887321 122222333321
Q ss_pred --------hcCCCCCCCeEEEEEeCCCC----CCChhhcCCCceeeEEEcCC
Q 013281 322 --------LDGFDSRGDVKVILATNRIE----SLDPALLRPGRIDRKIEFPL 361 (446)
Q Consensus 322 --------ld~~~~~~~v~vI~atn~~~----~ld~al~r~gRf~~~i~~~~ 361 (446)
.+.+....++.||+|+|..+ .+|.|++| ||. .|++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 01244456899999999987 79999999 995 566664
No 188
>PRK04132 replication factor C small subunit; Provisional
Probab=99.27 E-value=1.4e-10 Score=127.50 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=118.6
Q ss_pred eEEEEc--CCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhcCCchHHHHHHHHHHhhc------CCeEEEEcCc
Q 013281 227 GVILYG--EPGTGKTLLAKAVANST-----SATFLRVVGSELIQKYLGDGPKLVRELFRVADDL------SPSIVFIDEI 293 (446)
Q Consensus 227 ~vLL~G--ppGtGKT~Laraia~~~-----~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~------~p~IL~IDEi 293 (446)
+-+..| |++.||||+|+++|+++ +.+|+.+++++..+ -..++.+...+... ...|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 356668 99999999999999997 56899999997422 23455555443322 2359999999
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHH
Q 013281 294 DAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (446)
Q Consensus 294 d~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 373 (446)
|.+ +...|..|+.++++ ...++.+|++||.+..+.+++++ |+ ..+.|+.|+.++....++.
T Consensus 640 D~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 640 DAL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ccC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 999 56678888888764 24678999999999999999988 88 4899999999999988888
Q ss_pred HHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHH
Q 013281 374 HTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAG 409 (446)
Q Consensus 374 ~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~ 409 (446)
.+...++. ++..+..++..++| +.+..-++++.+.
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 77654443 34567888888887 5555556665443
No 189
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.27 E-value=1.3e-10 Score=121.88 Aligned_cols=212 Identities=19% Similarity=0.264 Sum_probs=132.4
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEe------
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----TFLRVV------ 257 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~----~~i~v~------ 257 (446)
..|.++.|...+++.+.-. +....+++|+||||||||++++.++..+.. ..+.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 4788888987766554322 234568999999999999999999975431 111110
Q ss_pred ch-----hh-------------hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHH
Q 013281 258 GS-----EL-------------IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (446)
Q Consensus 258 ~s-----~l-------------~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL 319 (446)
+. .+ ....+|.+...-...+..|.. ++|||||++.+ +...+..|.+.|
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHHHHHHHHHHH
Confidence 00 00 011223222122234555544 89999999888 667888888888
Q ss_pred HHhc------C--CCCCCCeEEEEEeCCCC---------------------CCChhhcCCCceeeEEEcCCCCHHHH---
Q 013281 320 NQLD------G--FDSRGDVKVILATNRIE---------------------SLDPALLRPGRIDRKIEFPLPDIKTR--- 367 (446)
Q Consensus 320 ~~ld------~--~~~~~~v~vI~atn~~~---------------------~ld~al~r~gRf~~~i~~~~P~~~er--- 367 (446)
+.-. + .....++.+|+|+|... .++.+++. ||+..+.++.|+.++.
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~ 396 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKT 396 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcc
Confidence 5422 0 01134789999999742 36678888 9999999998753211
Q ss_pred -------H----HHHH---HHHcc-CCCCCccCH--------------H--HHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 013281 368 -------R----RIFQ---IHTSR-MTLADDVNL--------------E--EFVMTKDEFSGADIKAICTEAGLLALRER 416 (446)
Q Consensus 368 -------~----~Il~---~~~~~-~~~~~~~~l--------------~--~la~~t~g~s~~di~~l~~~A~~~Al~~~ 416 (446)
. .+.. ..... -.+.....- . .-+....++|.+....+++-|...|..++
T Consensus 397 ~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g 476 (506)
T PRK09862 397 VVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQ 476 (506)
T ss_pred cCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 1111 00000 000111110 1 11223457899999999999999999999
Q ss_pred CCCccHHHHHHHHH
Q 013281 417 RMKVTHTDFKKAKE 430 (446)
Q Consensus 417 ~~~It~~d~~~A~~ 430 (446)
+..|+.+|+.+|+.
T Consensus 477 ~~~V~~~hv~eAl~ 490 (506)
T PRK09862 477 SDIITRQHLQEAVS 490 (506)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999999986
No 190
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.1e-10 Score=125.44 Aligned_cols=208 Identities=13% Similarity=0.170 Sum_probs=124.8
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-Ee
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR-VV 257 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~-v~ 257 (446)
.+|++++.+.++++|+|.+..+++++.++..... +..+...++|+||||||||++++++|+.++..++. ++
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~n 143 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSN 143 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhh
Confidence 4688999999999999999999999998876311 23344569999999999999999999988764433 11
Q ss_pred ---chhhhhhh------------cCCchHHHHHHHHHHhh----------cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 258 ---GSELIQKY------------LGDGPKLVRELFRVADD----------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 258 ---~s~l~~~~------------~g~~~~~v~~lf~~a~~----------~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
+......| .......+..++..+.. ....||||||++.++.. ... .+
T Consensus 144 pv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~-~l 215 (637)
T TIGR00602 144 PTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTR-AL 215 (637)
T ss_pred hhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHH-HH
Confidence 11000000 01122333444444431 24569999999988522 122 23
Q ss_pred HHHHH-HHHHhcCCCCCCCeEEEEEeCC-CC--------------CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHc
Q 013281 313 RTMLE-LLNQLDGFDSRGDVKVILATNR-IE--------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (446)
Q Consensus 313 ~~l~~-lL~~ld~~~~~~~v~vI~atn~-~~--------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~ 376 (446)
+.++. +.. ..+.+.+|++++. +. .+.+++++..|+. +|.|.+.+.......|...+.
T Consensus 216 q~lLr~~~~------e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 216 HEILRWKYV------SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred HHHHHHHhh------cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHH
Confidence 33333 211 1334445554441 11 1336777534553 899999999997777776665
Q ss_pred cCCC--C------CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 013281 377 RMTL--A------DDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 377 ~~~~--~------~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al 413 (446)
.... . ....+..|+.... +|++..+..-...+.
T Consensus 289 ~E~~~~~~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 289 IEAKKNGEKIKVPKKTSVELLCQGCS----GDIRSAINSLQFSSS 329 (637)
T ss_pred hhhhccccccccCCHHHHHHHHHhCC----ChHHHHHHHHHHHHh
Confidence 4211 1 1224556666444 478877665554433
No 191
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.27 E-value=1.8e-11 Score=127.78 Aligned_cols=206 Identities=21% Similarity=0.299 Sum_probs=131.9
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhh
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY 265 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~~ 265 (446)
++.+++|.+..++.+.+.+... .....+++|+|++||||+++|++++.... .+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 5567899998888888877642 12345799999999999999999998764 589999998764321
Q ss_pred c-----CCch-------HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc-----CC-CC
Q 013281 266 L-----GDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-----GF-DS 327 (446)
Q Consensus 266 ~-----g~~~-------~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld-----~~-~~ 327 (446)
+ |... ......|.. ...++||||||+.| ....|..|+.+|+.-. +. ..
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 1 1000 000111222 23589999999999 6788999999987532 10 01
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHccC----CCC----CccCHHH
Q 013281 328 RGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSRM----TLA----DDVNLEE 388 (446)
Q Consensus 328 ~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~~----~~~----~~~~l~~ 388 (446)
..++++|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ ++..++... ... .+..+..
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 2368999999864 234444544 553 56677777777765 333333322 211 2233566
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 013281 389 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425 (446)
Q Consensus 389 la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~ 425 (446)
|..+..-.+.+++++++.+|...+ ....|+.+|+
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 666665567889999999887654 2234444444
No 192
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=9.5e-11 Score=113.90 Aligned_cols=85 Identities=26% Similarity=0.354 Sum_probs=62.1
Q ss_pred eEEEEcCcccccccccCCC-CCCcHHHHHHHHHHHHHh-----cCCCCCCCeEEEEEe----CCCCCCChhhcCCCceee
Q 013281 286 SIVFIDEIDAVGTKRYDAH-SGGEREIQRTMLELLNQL-----DGFDSRGDVKVILAT----NRIESLDPALLRPGRIDR 355 (446)
Q Consensus 286 ~IL~IDEid~l~~~r~~~~-~~~~~~~~~~l~~lL~~l-----d~~~~~~~v~vI~at----n~~~~ld~al~r~gRf~~ 355 (446)
+||||||||.++.+...+. .-+...+|+-|+-++.-- -|...+.++.||++. ..|.+|-|.|. |||+.
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 5999999999987664332 233445677777776421 123345578899887 45788888984 69999
Q ss_pred EEEcCCCCHHHHHHHHH
Q 013281 356 KIEFPLPDIKTRRRIFQ 372 (446)
Q Consensus 356 ~i~~~~P~~~er~~Il~ 372 (446)
.+++...+.++...||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888774
No 193
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.24 E-value=6.6e-11 Score=124.43 Aligned_cols=210 Identities=20% Similarity=0.293 Sum_probs=136.9
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhh
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY 265 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~~ 265 (446)
.+.+++|.+..++.+.+.+... ......|+|+|++|||||++|++++.... .+|+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 5677999999888888877642 23355799999999999999999999764 599999998764321
Q ss_pred -----cCCchH-------HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC------CC
Q 013281 266 -----LGDGPK-------LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DS 327 (446)
Q Consensus 266 -----~g~~~~-------~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------~~ 327 (446)
.|.... .....|.. ...++|||||++.| ....|..|+.+|+.-... ..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 111100 00111222 23579999999999 677889999988753210 11
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHcc----CCC----CCccCHHH
Q 013281 328 RGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSR----MTL----ADDVNLEE 388 (446)
Q Consensus 328 ~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~----~~~----~~~~~l~~ 388 (446)
..++++|+||+.. ..+.+.|.. |+. .+.+..|...+|.+ ++..++.. ... -.+..+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 2368999999763 234455655 663 45666666666654 44444432 211 12234566
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 389 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 389 la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
|..+..-.+.++|+++++.|...+ ....|+.+|+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 666666667888999998877654 45578888886444
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.24 E-value=6.8e-11 Score=101.27 Aligned_cols=126 Identities=29% Similarity=0.442 Sum_probs=81.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEechhhhhh--------------hcCCchHHHHHHHHHHhhcCCeE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSAT---FLRVVGSELIQK--------------YLGDGPKLVRELFRVADDLSPSI 287 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~---~i~v~~s~l~~~--------------~~g~~~~~v~~lf~~a~~~~p~I 287 (446)
+..++|+||||||||++++.+|..+... ++.++++..... ...........++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999998775 788877654321 12334456677888888877899
Q ss_pred EEEcCcccccccccCCCCCCcHHHHHHHHHH--HHHhcCCCCCCCeEEEEEeCC-CCCCChhhcCCCceeeEEEcCCC
Q 013281 288 VFIDEIDAVGTKRYDAHSGGEREIQRTMLEL--LNQLDGFDSRGDVKVILATNR-IESLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 288 L~IDEid~l~~~r~~~~~~~~~~~~~~l~~l--L~~ld~~~~~~~v~vI~atn~-~~~ld~al~r~gRf~~~i~~~~P 362 (446)
|||||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999995321 11111110 000001122456789999986 3334444444 77777776554
No 195
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.22 E-value=1.1e-09 Score=102.20 Aligned_cols=168 Identities=22% Similarity=0.282 Sum_probs=118.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSE 260 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~ 260 (446)
..+.+.+.+|+|.+.|++.|.+.-...+. | .+..+|||+|..|||||+|++|+.++.. ..+++|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 44567899999999999999887776433 2 3567899999999999999999999874 4678888777
Q ss_pred hhhhhcCCchHHHHHHHHHHhhc-CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC-C-CCCCCeEEEEEe
Q 013281 261 LIQKYLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG-F-DSRGDVKVILAT 337 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~-~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~-~-~~~~~v~vI~at 337 (446)
+.. +-.+++..+.. ..-|||+|++--= . ....-..|-..| +| . ....||+|.+|+
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe------~----gd~~yK~LKs~L---eG~ve~rP~NVl~YATS 181 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFE------E----GDDAYKALKSAL---EGGVEGRPANVLFYATS 181 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCC------C----CchHHHHHHHHh---cCCcccCCCeEEEEEec
Confidence 643 23344444432 2469999997311 1 112223333333 33 2 224689999999
Q ss_pred CCCCCCChh--------------------hcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC
Q 013281 338 NRIESLDPA--------------------LLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (446)
Q Consensus 338 n~~~~ld~a--------------------l~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~ 382 (446)
|+-..++.. +--+.||...+.|++++.++...|+..++....+.-
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 986544421 111349999999999999999999999998887763
No 196
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.21 E-value=1.9e-10 Score=123.83 Aligned_cols=134 Identities=22% Similarity=0.311 Sum_probs=87.4
Q ss_pred CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc----CC------------CCCCCeEEEEEeCCC--CCCChh
Q 013281 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GF------------DSRGDVKVILATNRI--ESLDPA 346 (446)
Q Consensus 285 p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~~------------~~~~~v~vI~atn~~--~~ld~a 346 (446)
.++|||||++.| +...|..|+++|+.-. +. ...-+++||+++|+. ..++|+
T Consensus 227 GGtL~LDei~~L-----------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpd 295 (637)
T PRK13765 227 KGVLFIDEINTL-----------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPA 295 (637)
T ss_pred CcEEEEeChHhC-----------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHH
Confidence 368999999888 5678888988886422 10 001368999999884 467899
Q ss_pred hcCCCcee---eEEEcCC--C-CHHHHHHHHHHHHccCCC---CCccC---HHHHHHh---CCC------CcHHHHHHHH
Q 013281 347 LLRPGRID---RKIEFPL--P-DIKTRRRIFQIHTSRMTL---ADDVN---LEEFVMT---KDE------FSGADIKAIC 405 (446)
Q Consensus 347 l~r~gRf~---~~i~~~~--P-~~~er~~Il~~~~~~~~~---~~~~~---l~~la~~---t~g------~s~~di~~l~ 405 (446)
|.. ||. ..+.|.. + +.+.+..+++........ ...++ +..|... ..| +..++|..++
T Consensus 296 L~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 296 LRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 987 775 4566653 2 345556666544332211 11222 2233221 111 3468999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHH
Q 013281 406 TEAGLLALRERRMKVTHTDFKKAKEK 431 (446)
Q Consensus 406 ~~A~~~Al~~~~~~It~~d~~~A~~~ 431 (446)
++|..+|..+....|+.+|+.+|+..
T Consensus 374 r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 374 RVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHHHHHhhccceecHHHHHHHHHh
Confidence 99999999999999999999888753
No 197
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.20 E-value=4e-11 Score=109.05 Aligned_cols=115 Identities=24% Similarity=0.261 Sum_probs=73.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEechhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSA----TFLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAV 296 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~----~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l 296 (446)
-.++||+||+|||||.+|+++|..+.. +++.++++++.... +....+..++..+. ....+||||||||.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 456999999999999999999999995 99999999987611 11112222222111 111249999999999
Q ss_pred cccccCCCCCCcHHHHHHHHHHHHHhcCC------CCCCCeEEEEEeCCCC
Q 013281 297 GTKRYDAHSGGEREIQRTMLELLNQLDGF------DSRGDVKVILATNRIE 341 (446)
Q Consensus 297 ~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------~~~~~v~vI~atn~~~ 341 (446)
.+.......-....+++.|+++++.-.-. ....+++||+|+|--.
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 54311111111226778888888642111 1235799999998643
No 198
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.19 E-value=1e-09 Score=105.19 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=99.7
Q ss_pred CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC------------CCCCChhhcCCC
Q 013281 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR------------IESLDPALLRPG 351 (446)
Q Consensus 284 ~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~------------~~~ld~al~r~g 351 (446)
-|+||||||++.| +-+....|+..|+. .-..++|+|||+ |.-++-.++.
T Consensus 288 vpGVLFIDEvHML-----------DIEcFsFlNrAlE~------d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD-- 348 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----------DIECFSFLNRALEN------DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD-- 348 (454)
T ss_pred ccceEEEeeehhh-----------hhHHHHHHHHHhhh------ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--
Confidence 3789999999988 56666666666542 123457777775 3456777777
Q ss_pred ceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013281 352 RIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 352 Rf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
|.- .|.-.+++.++...||++.+....+. .+..++.|......-|-+.--.|++.|.+.|.++....+..+|+..|++
T Consensus 349 R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 349 RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYR 427 (454)
T ss_pred hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHH
Confidence 763 77888899999999999998765443 2334556666666667777788999999999999999999999999999
Q ss_pred HHHhhhc
Q 013281 431 KVMFKKK 437 (446)
Q Consensus 431 ~v~~~~~ 437 (446)
-.+..+.
T Consensus 428 LFlD~~R 434 (454)
T KOG2680|consen 428 LFLDEKR 434 (454)
T ss_pred HHhhhhh
Confidence 8776543
No 199
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=4.1e-10 Score=112.76 Aligned_cols=148 Identities=22% Similarity=0.305 Sum_probs=100.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhcCCchHHHHHHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFR 278 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~------------------------~i~v~~s~l~~~~~g~~~~~v~~lf~ 278 (446)
+.+..+||+||+|+|||++|+++|+.+.+. ++.+....- . -...-..++++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 346689999999999999999999977431 122211000 0 0112345566555
Q ss_pred HHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCcee
Q 013281 279 VADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRID 354 (446)
Q Consensus 279 ~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~ 354 (446)
.+.. ....|++||++|.+ +.+.+..|+..|++ +..++.+|++|+.++.+.|.+++ |+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hce
Confidence 4433 34569999999999 56666777766654 34688999999999999999998 995
Q ss_pred eEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCC
Q 013281 355 RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 395 (446)
Q Consensus 355 ~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g 395 (446)
.+.|++|+.++...++...... ..+.+...++....|
T Consensus 159 -~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 6999999999988888765321 122233455555555
No 200
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.19 E-value=8.4e-11 Score=115.01 Aligned_cols=200 Identities=23% Similarity=0.308 Sum_probs=133.1
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE 260 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~ 260 (446)
..+...|+.|++.+..++.+.+..... +.....+||.|.+||||.++|++.+... ..+|+.++|..
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~-----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~ 265 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKL-----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCAS 265 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHh-----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCC
Confidence 345667889999999888877655441 1123459999999999999999999876 45999999987
Q ss_pred hhhhh-----cCCc--hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC------
Q 013281 261 LIQKY-----LGDG--PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS------ 327 (446)
Q Consensus 261 l~~~~-----~g~~--~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~------ 327 (446)
+.... .|.. .+....+|+.|.. +.||+|||..+ +...|..|+.+|+.- .|..
T Consensus 266 lPe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----------Sp~lQaKLLRFL~DG-tFRRVGee~E 330 (511)
T COG3283 266 LPEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----------SPRLQAKLLRFLNDG-TFRRVGEDHE 330 (511)
T ss_pred CchhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----------CHHHHHHHHHHhcCC-ceeecCCcce
Confidence 75431 2222 2334567888766 89999999888 788999999999832 1221
Q ss_pred -CCCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH--------HHHHHHccCCCC-Ccc---CHH
Q 013281 328 -RGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR--------IFQIHTSRMTLA-DDV---NLE 387 (446)
Q Consensus 328 -~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~--------Il~~~~~~~~~~-~~~---~l~ 387 (446)
.-+|+||+||..+- .+-..|.- |+. ++.+..|...+|.. +++.+....... ... .+.
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~ 407 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLT 407 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHH
Confidence 12699999996532 22233333 443 66777777777644 333444444433 222 244
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHH
Q 013281 388 EFVMTKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 388 ~la~~t~g~s~~di~~l~~~A~~~A 412 (446)
.|..+.+-.+.+++++++-+|....
T Consensus 408 ~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 408 VLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHh
Confidence 5555555557788888887776554
No 201
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.18 E-value=3.7e-10 Score=118.28 Aligned_cols=208 Identities=21% Similarity=0.315 Sum_probs=131.4
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhh
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY 265 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~~ 265 (446)
.+..++|.+..+..+.+.+... ......++++|++||||+++|++++.... .+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 4456888888888877766552 23356799999999999999999998754 699999998764321
Q ss_pred -----cCCchH-------HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc----CC--CC
Q 013281 266 -----LGDGPK-------LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GF--DS 327 (446)
Q Consensus 266 -----~g~~~~-------~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~~--~~ 327 (446)
.|.... .....|..| ..++||||||+.+ ....|..|+.++..-. +- ..
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 111000 001122222 3479999999999 6778899988887532 10 01
Q ss_pred CCCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHccC----CC----CCccCHHH
Q 013281 328 RGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSRM----TL----ADDVNLEE 388 (446)
Q Consensus 328 ~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~~----~~----~~~~~l~~ 388 (446)
..++++|++||..- .+.+.+.. |+. .+.+..|...+|.+ ++..++... .. -.+..+..
T Consensus 276 ~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 352 (457)
T PRK11361 276 KVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352 (457)
T ss_pred eeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23689999998631 23344443 442 56677787777765 333333321 11 12233456
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 013281 389 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 389 la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~ 427 (446)
|..+..-.+.+++++++.+|...+ ....|+.+|+..
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~ 388 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPP 388 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChH
Confidence 666665567889999998877643 334577777654
No 202
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1e-09 Score=109.76 Aligned_cols=96 Identities=31% Similarity=0.524 Sum_probs=74.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcCCch-HHHHHHHHHHhh----cCCeEEEEcCcccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDGP-KLVRELFRVADD----LSPSIVFIDEIDAVGT 298 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-~~~g~~~-~~v~~lf~~a~~----~~p~IL~IDEid~l~~ 298 (446)
..+|||.||+|+|||+||+.+|+-++.||...+|..|.+ .|+|+.- ..+..++..|.. ++.+||||||+|.|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 347999999999999999999999999999999999986 6888754 445556555432 3568999999999984
Q ss_pred cccCCC---CCCcHHHHHHHHHHHH
Q 013281 299 KRYDAH---SGGEREIQRTMLELLN 320 (446)
Q Consensus 299 ~r~~~~---~~~~~~~~~~l~~lL~ 320 (446)
+....+ .-+.+.+|+.|+.+|+
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllE 330 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLE 330 (564)
T ss_pred cCccccccccccchhHHHHHHHHhc
Confidence 432221 2234568888888885
No 203
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=2.6e-10 Score=114.52 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=105.9
Q ss_pred CcccccC-cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013281 189 SYADIGG-LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--------------- 252 (446)
Q Consensus 189 ~~~di~G-l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~--------------- 252 (446)
.|+.|.| .+.+++.++..+..- +.+..+||+||+|+|||++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4667777 888999999998752 346778999999999999999999976321
Q ss_pred ---------EEEEechhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHH
Q 013281 253 ---------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (446)
Q Consensus 253 ---------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL 319 (446)
+..+... +. ...-..++++.+.+. .....|++|||+|.+ +.+.+..|+..|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 2222111 00 011234555554433 223469999999999 555666666666
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHH
Q 013281 320 NQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (446)
Q Consensus 320 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 373 (446)
++ +..++.+|++|+.+..+.|.+++ |+. .++|+.|+.++...+++.
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 53 35678889999888899999988 884 899999999888777764
No 204
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.15 E-value=1.9e-10 Score=120.74 Aligned_cols=209 Identities=21% Similarity=0.315 Sum_probs=131.5
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh-
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY- 265 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~- 265 (446)
...++|.+...+++.+.+... ......+++.|++||||+++|++++... ..+|+.++|..+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH
Confidence 456889988888888777551 1234579999999999999999999875 4599999998764321
Q ss_pred ----cCCchH----HH---HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC------CCC
Q 013281 266 ----LGDGPK----LV---RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DSR 328 (446)
Q Consensus 266 ----~g~~~~----~v---~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------~~~ 328 (446)
.|.... .. ...|. ....++||||||+.| ....|..|+.+|..-... ...
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceee
Confidence 111000 00 01122 223589999999999 677889999988753210 112
Q ss_pred CCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHccC----CC----CCccCHHHH
Q 013281 329 GDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSRM----TL----ADDVNLEEF 389 (446)
Q Consensus 329 ~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~~----~~----~~~~~l~~l 389 (446)
.++.+|++|+..- .+.+.|+. |+. .+.+..|...+|.+ ++..++... .. -.+..+..|
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 3688999997632 34445544 553 34555555554443 444443322 11 122335566
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 390 VMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 390 a~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
..+..-.+.++|+++++.|...+ ....|+.+|+...+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 66655456788999998887665 34578888886554
No 205
>PRK15115 response regulator GlrR; Provisional
Probab=99.14 E-value=1.1e-09 Score=114.42 Aligned_cols=202 Identities=18% Similarity=0.268 Sum_probs=127.6
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhhcCC
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKYLGD 268 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~~~g~ 268 (446)
.++|.+..+..+.+.+... ......|+|+|++|||||++|+++++... .+|+.++|..+....+
T Consensus 135 ~lig~s~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~-- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV-----------AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL-- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhh-----------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH--
Confidence 4677777777666655542 12345699999999999999999998754 6999999987643211
Q ss_pred chHHHHHHHHH---------------HhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC--C----CC
Q 013281 269 GPKLVRELFRV---------------ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--F----DS 327 (446)
Q Consensus 269 ~~~~v~~lf~~---------------a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~--~----~~ 327 (446)
-..+|.. ......++|||||||.| ....|..|+.++..-.. . ..
T Consensus 202 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 202 ----ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred ----HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCcee
Confidence 1112211 11223479999999999 67789999988875321 0 01
Q ss_pred CCCeEEEEEeCCCC-------CCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHccC----CC----CCccCHHH
Q 013281 328 RGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSRM----TL----ADDVNLEE 388 (446)
Q Consensus 328 ~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~~~----~~----~~~~~l~~ 388 (446)
..++++|+||+..- .+.+.+.. |+. .+.+..|...+|.+ ++..++... .. -.+..+..
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 343 (444)
T PRK15115 267 DIDVRIISATHRDLPKAMARGEFREDLYY--RLN-VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKR 343 (444)
T ss_pred eeeEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 23789999998621 12223322 332 56777788888865 334443321 11 12334667
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 013281 389 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 389 la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~ 427 (446)
|..+..-.+.++++++++.|...+ ....|+.+++..
T Consensus 344 L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~ 379 (444)
T PRK15115 344 LMTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQ 379 (444)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhh
Confidence 777776668889999998877643 334566666643
No 206
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.12 E-value=1.9e-09 Score=113.56 Aligned_cols=224 Identities=19% Similarity=0.239 Sum_probs=141.0
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEechhhh
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----------ATFLRVVGSELI 262 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~----------~~~i~v~~s~l~ 262 (446)
+-+.+....+|..+++..+... .....+++.|-||||||..++.|.+.+- ..|+.|++-.|.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~--------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ--------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC--------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 3445555555555554432210 1123689999999999999999988552 367888876554
Q ss_pred h----------hhcCCch------HHHHHHHHHH-hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC
Q 013281 263 Q----------KYLGDGP------KLVRELFRVA-DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF 325 (446)
Q Consensus 263 ~----------~~~g~~~------~~v~~lf~~a-~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 325 (446)
. .+.|+.. ..+..-|... ....++||+|||+|.|++.. |..|..+++...
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt-- 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT-- 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--
Confidence 3 2222211 1122223211 12247899999999997543 567777765432
Q ss_pred CCCCCeEEEEEeCCCCCCChhhcC---CCcee-eEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcH--H
Q 013281 326 DSRGDVKVILATNRIESLDPALLR---PGRID-RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSG--A 399 (446)
Q Consensus 326 ~~~~~v~vI~atn~~~~ld~al~r---~gRf~-~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~--~ 399 (446)
.....++||+.+|..+ ++..++- .+|++ ..|.|.+++..+..+|+...+...........+-+|......|| +
T Consensus 537 ~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred CCCCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 2345788888888765 3333332 22554 48899999999999999998877633323233333433333333 4
Q ss_pred HHHHHHHHHHHHHHHhCC-------CCccHHHHHHHHHHHHhhhcc
Q 013281 400 DIKAICTEAGLLALRERR-------MKVTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 400 di~~l~~~A~~~Al~~~~-------~~It~~d~~~A~~~v~~~~~~ 438 (446)
....+|++|...|-.+.. ..|++.|+..|+..++..-..
T Consensus 616 raldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYI 661 (767)
T ss_pred HHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHH
Confidence 455679999999877765 678999999999988765433
No 207
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.07 E-value=1.2e-09 Score=105.79 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=118.2
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-----
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF----- 253 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~----- 253 (446)
.-|++++++.++.|+++.++.+..+.+++..+ + .| +.|+|||||||||+...+.|+.+..+.
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~----------~--lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m 95 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP----------G--LP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSM 95 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCC----------C--CC-cccccCCCCCCCCCchhhhhhhhcCCCCchhH
Confidence 44788999999999999999999999986653 1 22 799999999999999999999887641
Q ss_pred -EEEechhhhhhhcCCchHHHHHHHHHHhh-------cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC
Q 013281 254 -LRVVGSELIQKYLGDGPKLVRELFRVADD-------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF 325 (446)
Q Consensus 254 -i~v~~s~l~~~~~g~~~~~v~~lf~~a~~-------~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 325 (446)
...+.|+- .-.+ ..+.-...|..++. ..+..|++||+|++ ....|..|-+.+...
T Consensus 96 ~lelnaSd~--rgid-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~--- 158 (360)
T KOG0990|consen 96 LLELNASDD--RGID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKY--- 158 (360)
T ss_pred HHHhhccCc--cCCc-chHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHh---
Confidence 11111110 0011 11222345555553 25679999999999 566777777755543
Q ss_pred CCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC
Q 013281 326 DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (446)
Q Consensus 326 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~ 379 (446)
+.++.|+..+|.+..+.|++++ ||. .+.|.+.+.......+..++..-.
T Consensus 159 --t~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 159 --TANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred --ccceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcch
Confidence 4578888999999999999988 886 566766666666666666665433
No 208
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.07 E-value=1e-08 Score=97.62 Aligned_cols=179 Identities=17% Similarity=0.247 Sum_probs=130.1
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-------- 251 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~-------- 251 (446)
+|++++.+.+++.+.+.++....++..... ..-.++++|||+|+||-|.+.++.+++..
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki 68 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI 68 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee
Confidence 477888899999999999999999887652 11136999999999999999999997621
Q ss_pred ---cE------------------EEEechhhhhhhcCCchHH-HHHHHHHHhhc---------CCeEEEEcCcccccccc
Q 013281 252 ---TF------------------LRVVGSELIQKYLGDGPKL-VRELFRVADDL---------SPSIVFIDEIDAVGTKR 300 (446)
Q Consensus 252 ---~~------------------i~v~~s~l~~~~~g~~~~~-v~~lf~~a~~~---------~p~IL~IDEid~l~~~r 300 (446)
.| ++++.|+ .|...+. +.+++....+. .-.+|+|.|+|.|
T Consensus 69 ~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L---- 139 (351)
T KOG2035|consen 69 ETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL---- 139 (351)
T ss_pred eeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh----
Confidence 11 1122221 2222222 33444333222 1349999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCC
Q 013281 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (446)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~ 380 (446)
..+.|..|-+-++.. .+++++|+.+|....+-+++++ |+ ..|.+|.|+.++...++...+.+.++
T Consensus 140 -------T~dAQ~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 140 -------TRDAQHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred -------hHHHHHHHHHHHHHH-----hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 677888887777654 3578999999999999999988 87 47999999999999999999888776
Q ss_pred CCcc-CHHHHHHhCCC
Q 013281 381 ADDV-NLEEFVMTKDE 395 (446)
Q Consensus 381 ~~~~-~l~~la~~t~g 395 (446)
.-+. -+..++..+.|
T Consensus 205 ~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 205 QLPKELLKRIAEKSNR 220 (351)
T ss_pred cCcHHHHHHHHHHhcc
Confidence 6433 35667776654
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.06 E-value=3.6e-09 Score=105.94 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=49.0
Q ss_pred cc-cccCcHHHHHHHHHHhhcCCCCchhhhhhCCC-CCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEEec
Q 013281 190 YA-DIGGLDAQIQEIKEAVELPLTHPELYEDIGIK-PPKGVILYGEPGTGKTLLAKAVANSTSA-------TFLRVVG 258 (446)
Q Consensus 190 ~~-di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~-~~~~vLL~GppGtGKT~Laraia~~~~~-------~~i~v~~ 258 (446)
|+ ++.|+++++.++.+++..... |.. ..+.++|+||||||||+||++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 44 799999999999998876432 222 3467899999999999999999998865 7777766
No 210
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.06 E-value=2.9e-10 Score=99.65 Aligned_cols=106 Identities=29% Similarity=0.528 Sum_probs=78.6
Q ss_pred cCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEechhhhhhhcCCch
Q 013281 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSELIQKYLGDGP 270 (446)
Q Consensus 194 ~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v~~s~l~~~~~g~~~ 270 (446)
+|.+..++++++.+... ......|+|+|++||||+++|++++..... +|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 47778888888888763 234567999999999999999999997653 67777776543
Q ss_pred HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 271 KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 271 ~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
.++++.+ ..++|||+|+|.| +.+.|..|..+|...+ ..++++|+++..
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQ 109 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC
T ss_pred ---HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCC
Confidence 3345554 5589999999999 7788999999998743 456789988865
No 211
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.8e-10 Score=115.92 Aligned_cols=209 Identities=22% Similarity=0.308 Sum_probs=121.6
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------------
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------------- 251 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--------------- 251 (446)
...|.||.|++.+++.+..+..- .+++||+||||||||+||+.+..-+.-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~ 239 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSL 239 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhh
Confidence 34899999999999999887765 678999999999999999988764321
Q ss_pred --------------cEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHH
Q 013281 252 --------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLE 317 (446)
Q Consensus 252 --------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~ 317 (446)
||..-+-+.-....+|.+...--.-...| ..+||||||+-.+ .+.+++
T Consensus 240 ~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA---H~GVLFLDElpef---------------~~~iLe 301 (490)
T COG0606 240 AGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA---HNGVLFLDELPEF---------------KRSILE 301 (490)
T ss_pred cccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee---cCCEEEeeccchh---------------hHHHHH
Confidence 11110000000011111100000001111 1269999998554 223333
Q ss_pred HHH-HhcCC-----------CCCCCeEEEEEeCCCC-----------------------CCChhhcCCCceeeEEEcCCC
Q 013281 318 LLN-QLDGF-----------DSRGDVKVILATNRIE-----------------------SLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 318 lL~-~ld~~-----------~~~~~v~vI~atn~~~-----------------------~ld~al~r~gRf~~~i~~~~P 362 (446)
-|. -|+.- .-..++.+|+|+|..- .+...+++ |||..++++.+
T Consensus 302 ~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~ 379 (490)
T COG0606 302 ALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRL 379 (490)
T ss_pred HHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCC
Confidence 333 22210 0012467788887521 23445666 99999999887
Q ss_pred CHHHHH--------------HHHHHH------HccCCCC----------------CccCHHHHHHhCCCCcHHHHHHHHH
Q 013281 363 DIKTRR--------------RIFQIH------TSRMTLA----------------DDVNLEEFVMTKDEFSGADIKAICT 406 (446)
Q Consensus 363 ~~~er~--------------~Il~~~------~~~~~~~----------------~~~~l~~la~~t~g~s~~di~~l~~ 406 (446)
+..++. .+++.+ ..+.... .+.++...+-..-++|.+....+++
T Consensus 380 ~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILK 459 (490)
T COG0606 380 SAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILK 459 (490)
T ss_pred CHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHH
Confidence 643332 122111 1111001 1112233344455688889999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHH
Q 013281 407 EAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 407 ~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
-|..+|-.++...|...|+.+|+.
T Consensus 460 varTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 460 VARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HHhhhhcccCcchhhHHHHHHHHh
Confidence 999999888899999999999875
No 212
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.05 E-value=7.4e-09 Score=113.80 Aligned_cols=229 Identities=18% Similarity=0.154 Sum_probs=135.9
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchh--------hhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEE
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPEL--------YEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-------ATFLRV 256 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~--------~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~-------~~~i~v 256 (446)
.|.|.+.+++.|.-.+-.......- +....++...+|||+|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 4788888887764444222110000 0001234455799999999999999999998643 244444
Q ss_pred echhhhhhhcCC--chHH-HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc------CC--
Q 013281 257 VGSELIQKYLGD--GPKL-VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GF-- 325 (446)
Q Consensus 257 ~~s~l~~~~~g~--~~~~-v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~-- 325 (446)
.+..... +... +... -...+..| ..+++||||++.+ ....|..|.++|++-. |.
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCcce
Confidence 4433221 0100 0000 00111122 3479999999999 6677888999886421 11
Q ss_pred CCCCCeEEEEEeCCCC-------------CCChhhcCCCceeeEEE-cCCCCHHHHHHHHHHHHccC-------------
Q 013281 326 DSRGDVKVILATNRIE-------------SLDPALLRPGRIDRKIE-FPLPDIKTRRRIFQIHTSRM------------- 378 (446)
Q Consensus 326 ~~~~~v~vI~atn~~~-------------~ld~al~r~gRf~~~i~-~~~P~~~er~~Il~~~~~~~------------- 378 (446)
....++.||+|+|... .|+++|++ |||..+. ++.|+.+.-+.|..+.+...
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~ 673 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDED 673 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHHhhccccccccccccc
Confidence 1134789999999742 47899999 9986544 45566655444433222100
Q ss_pred --------------------------------------CCC---CccCHHHHH----H-hC-------------------
Q 013281 379 --------------------------------------TLA---DDVNLEEFV----M-TK------------------- 393 (446)
Q Consensus 379 --------------------------------------~~~---~~~~l~~la----~-~t------------------- 393 (446)
.+. .+..-+.|. . +.
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~ 753 (915)
T PTZ00111 674 TYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDD 753 (915)
T ss_pred chhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccc
Confidence 000 000001111 1 10
Q ss_pred -------C-----CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhc
Q 013281 394 -------D-----EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 394 -------~-----g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~ 437 (446)
. -.+.+.|.+|++-|...|-.+-+..|+.+|+..|++-+.....
T Consensus 754 ~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~ 809 (915)
T PTZ00111 754 DDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTF 809 (915)
T ss_pred cccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHHHh
Confidence 1 1468999999999999999999999999999999987765543
No 213
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.05 E-value=2.1e-10 Score=98.08 Aligned_cols=114 Identities=32% Similarity=0.411 Sum_probs=62.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech-hhh-hhhcCCchHHH-HHHHHHHhh-cCCeEEEEcCcccccccccC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGS-ELI-QKYLGDGPKLV-RELFRVADD-LSPSIVFIDEIDAVGTKRYD 302 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s-~l~-~~~~g~~~~~v-~~lf~~a~~-~~p~IL~IDEid~l~~~r~~ 302 (446)
+|||.|+||+|||++|+++|+.++..|.+|.+. ++. +...|..--.. ...|..... .-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 589999999999999999999999999998774 222 11111100000 000000000 01249999999888
Q ss_pred CCCCCcHHHHHHHHHHHHHhc----C--CCCCCCeEEEEEeCCCC-----CCChhhcCCCce
Q 013281 303 AHSGGEREIQRTMLELLNQLD----G--FDSRGDVKVILATNRIE-----SLDPALLRPGRI 353 (446)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~~ld----~--~~~~~~v~vI~atn~~~-----~ld~al~r~gRf 353 (446)
....|..+++.+.+-. + +.-..++.||+|.|..+ .|+.+++. ||
T Consensus 75 -----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 -----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 6678999999998642 1 11234588899999866 57788877 77
No 214
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.02 E-value=3e-09 Score=95.99 Aligned_cols=134 Identities=23% Similarity=0.331 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------
Q 013281 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----------------------- 251 (446)
Q Consensus 195 Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~----------------------- 251 (446)
|++.+++.|...+..- +.|..+||+||+|+||+++|+++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 7788899999988762 45778999999999999999999996532
Q ss_pred cEEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC
Q 013281 252 TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (446)
Q Consensus 252 ~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 327 (446)
.++.+....-.. .-....++.+...+.. ....|++|||+|.+ +.+.+..|+..|++ .
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 223332221100 1123455655555433 23569999999999 67788888888874 3
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCC
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P 362 (446)
..++.+|++|+.++.+-|.+++ |+. .+.|+..
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 5689999999999999999998 884 6777654
No 215
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.3e-08 Score=101.60 Aligned_cols=144 Identities=18% Similarity=0.258 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------
Q 013281 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT----------------------- 252 (446)
Q Consensus 196 l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~----------------------- 252 (446)
+....+.+...+..- +.+..+||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~~------------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQG------------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 556677777777651 346789999999999999999999976331
Q ss_pred -EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC
Q 013281 253 -FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (446)
Q Consensus 253 -~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 327 (446)
|+.+...+ ++ .-+-..+|++.+.+.. ....|++||++|.+ +.+.+..|+..|++ +
T Consensus 75 D~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----P 134 (325)
T PRK06871 75 DFHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----P 134 (325)
T ss_pred CEEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----C
Confidence 22221100 01 1123455655444332 33469999999999 55666666666653 4
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHH
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~ 374 (446)
..++.+|++|+.++.+.|.+++ |+. .+.|++|+.++..+.|...
T Consensus 135 p~~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999999998 985 8899999999888888765
No 216
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.3e-09 Score=105.42 Aligned_cols=95 Identities=27% Similarity=0.501 Sum_probs=72.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcCCchHH-HHHHHHHHhh----cCCeEEEEcCccccccc
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDGPKL-VRELFRVADD----LSPSIVFIDEIDAVGTK 299 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-~~~g~~~~~-v~~lf~~a~~----~~p~IL~IDEid~l~~~ 299 (446)
+++||.||+|||||+||+.+|+.++.||..-++..|.. .|+|+.-.. +..++..|.. ...+||||||||.++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 47999999999999999999999999999999998876 688875443 4444444322 24589999999999876
Q ss_pred ccCCC---CCCcHHHHHHHHHHHH
Q 013281 300 RYDAH---SGGEREIQRTMLELLN 320 (446)
Q Consensus 300 r~~~~---~~~~~~~~~~l~~lL~ 320 (446)
..+.+ .-+...+|+.|+.+++
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiE 201 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIE 201 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHc
Confidence 53321 2234567888888875
No 217
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.00 E-value=9.5e-09 Score=103.47 Aligned_cols=219 Identities=22% Similarity=0.349 Sum_probs=135.5
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec---------
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG--------- 258 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~--------- 258 (446)
..|.-++|.+..+..|.-....| .-.|+||-|+.|||||+++|+||.-+.---+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 45778899998888765543332 23479999999999999999999976421111111
Q ss_pred ----hh-------------------hhhhhcCCchHHH----------H--------HHHHHHhhcCCeEEEEcCccccc
Q 013281 259 ----SE-------------------LIQKYLGDGPKLV----------R--------ELFRVADDLSPSIVFIDEIDAVG 297 (446)
Q Consensus 259 ----s~-------------------l~~~~~g~~~~~v----------~--------~lf~~a~~~~p~IL~IDEid~l~ 297 (446)
.. +++.-++.++..+ . .++..| ..+||+|||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A---nRGIlYvDEvnlL- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA---NRGILYVDEVNLL- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc---cCCEEEEeccccc-
Confidence 10 1111122233211 1 111222 2369999999998
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCCC-CCChhhcCCCceeeEEEcCCC-CHHHH
Q 013281 298 TKRYDAHSGGEREIQRTMLELLNQL------DGF--DSRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLP-DIKTR 367 (446)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~l------d~~--~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P-~~~er 367 (446)
+..++..|+..+.+- +|+ ....++++|+|+|.-+ .|-|.|+. ||...+.+..| +.++|
T Consensus 157 ----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~r 224 (423)
T COG1239 157 ----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEER 224 (423)
T ss_pred ----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHH
Confidence 678899999988762 232 2234799999999854 68899998 99999988876 67888
Q ss_pred HHHHHHHHccCCCCCccCHHHH-----------HHhCCCC------------------------cHHHHHHHHHHHHHHH
Q 013281 368 RRIFQIHTSRMTLADDVNLEEF-----------VMTKDEF------------------------SGADIKAICTEAGLLA 412 (446)
Q Consensus 368 ~~Il~~~~~~~~~~~~~~l~~l-----------a~~t~g~------------------------s~~di~~l~~~A~~~A 412 (446)
.+|....+.- ...++.-++.+ +....+. .-+++ .+++.|...|
T Consensus 225 v~Ii~r~~~f-~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi-~~~r~a~a~a 302 (423)
T COG1239 225 VEIIRRRLAF-EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADI-VVVRAAKALA 302 (423)
T ss_pred HHHHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhh-HHHHHHHHHH
Confidence 8888765442 11111111111 1111111 11222 2334455566
Q ss_pred HHhCCCCccHHHHHHHHHHHHhhhc
Q 013281 413 LRERRMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 413 l~~~~~~It~~d~~~A~~~v~~~~~ 437 (446)
..+++..|+.+|+..|..-.+....
T Consensus 303 a~~Gr~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 303 ALRGRTEVEEEDIREAAELALLHRR 327 (423)
T ss_pred HhcCceeeehhhHHHHHhhhhhhhh
Confidence 6678899999999999988776544
No 218
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.99 E-value=1.9e-09 Score=112.33 Aligned_cols=205 Identities=19% Similarity=0.274 Sum_probs=124.7
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhhhc--
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKYL-- 266 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~~~-- 266 (446)
.+.|.+..++.+...+... ......++++|++||||+++|++++.... .+|+.++|+.+....+
T Consensus 140 ~lig~s~~~~~~~~~i~~~-----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~ 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV-----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhc-----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH
Confidence 4677777777776666542 23356799999999999999999998654 6899999987643221
Q ss_pred ---CCchHH-------HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC------CCCCC
Q 013281 267 ---GDGPKL-------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DSRGD 330 (446)
Q Consensus 267 ---g~~~~~-------v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------~~~~~ 330 (446)
|..... ....|. ...+++||||||+.| ....|..|+.++..-... ....+
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeec
Confidence 110000 001112 224689999999999 667888888888642210 01236
Q ss_pred eEEEEEeCCCCCCChhhcCCCceee-------EEEcCCCCHHHHHH----HHHHHHccC----CC----CCccCHHHHHH
Q 013281 331 VKVILATNRIESLDPALLRPGRIDR-------KIEFPLPDIKTRRR----IFQIHTSRM----TL----ADDVNLEEFVM 391 (446)
Q Consensus 331 v~vI~atn~~~~ld~al~r~gRf~~-------~i~~~~P~~~er~~----Il~~~~~~~----~~----~~~~~l~~la~ 391 (446)
+++|++|+..- . .+..+|+|.. .+.+..|...+|.+ ++..++... .. -.+..+..|..
T Consensus 275 ~rii~~t~~~~--~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (441)
T PRK10365 275 VRLIAATHRDL--A-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 (441)
T ss_pred eEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 88999987632 1 2222333321 56677777777755 444444321 11 12333556666
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 427 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~ 427 (446)
+..-.+.++++++++.|...+ ....|+.+|+..
T Consensus 352 ~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~ 384 (441)
T PRK10365 352 YDWPGNIRELENAVERAVVLL---TGEYISERELPL 384 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHhC---CCCccchHhCch
Confidence 665457788888888876543 334566666543
No 219
>PRK08116 hypothetical protein; Validated
Probab=98.98 E-value=5e-09 Score=102.16 Aligned_cols=123 Identities=21% Similarity=0.302 Sum_probs=80.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhc----CCchHHHHHHHHHHhhcCCeEEEEcCccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYL----GDGPKLVRELFRVADDLSPSIVFIDEIDAVG 297 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~----g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~ 297 (446)
+.+++|+|++|||||+||.++++++ +.+++.++.++++.... +........++.... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999975 67889999888776432 111111223333332 34699999996431
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC-C----CChhhcCCCce---eeEEEcCCCCH
Q 013281 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE-S----LDPALLRPGRI---DRKIEFPLPDI 364 (446)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~-~----ld~al~r~gRf---~~~i~~~~P~~ 364 (446)
.+...+..|..+++... ..+..+|+|||... . ++..+.+ |+ ...|.+..+|.
T Consensus 192 ---------~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 13455677888887542 13345888888742 2 4556665 64 34577777765
No 220
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.97 E-value=8.5e-10 Score=115.59 Aligned_cols=171 Identities=23% Similarity=0.352 Sum_probs=109.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEechhhhhhh-----c--------CCchHHHHHHHHHHhhcCCeEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELIQKY-----L--------GDGPKLVRELFRVADDLSPSIVF 289 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~--~~~i~v~~s~l~~~~-----~--------g~~~~~v~~lf~~a~~~~p~IL~ 289 (446)
.-.+++.|.|||||-.+|++|+...+ .+|+.++|..+.... + |...+..+..++.|.. +.+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccH
Confidence 44699999999999999999998765 499999997665421 1 1222223333444433 7999
Q ss_pred EcCcccccccccCCCCCCcHHHHHHHHHHHHHh-----cCCCCCCCeEEEEEeCCCCCCChhhcCCCceee-------EE
Q 013281 290 IDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL-----DGFDSRGDVKVILATNRIESLDPALLRPGRIDR-------KI 357 (446)
Q Consensus 290 IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~l-----d~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~-------~i 357 (446)
+|||..+ ....|..|+++|.+- .+....-+|.||+||++.-. .+.+.|||.+ .+
T Consensus 413 ldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhcCe
Confidence 9999998 678999999999863 33333347999999987421 4555666643 55
Q ss_pred EcCCCCHHHHHH---HHHHHHccCC-CCCcc---CHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 013281 358 EFPLPDIKTRRR---IFQIHTSRMT-LADDV---NLEEFVMTKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 358 ~~~~P~~~er~~---Il~~~~~~~~-~~~~~---~l~~la~~t~g~s~~di~~l~~~A~~~A 412 (446)
.|.+|...+|.+ .+..++.+.+ ..-.+ .+..|..+..-.+.+++.+++..+...+
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 666777777755 3333332221 11112 2334444433336777888877766554
No 221
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.96 E-value=1.7e-08 Score=106.56 Aligned_cols=210 Identities=15% Similarity=0.240 Sum_probs=128.0
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.+|++++.+.+.+||.-...-+++++.++...+. +....+-+||+||||||||++++.+|++++..+.+-..
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~n 78 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWIN 78 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecC
Confidence 4588999999999999999999999999986322 22334568889999999999999999999876665422
Q ss_pred hhh-------hhhhcCCch------H---HHHHH-HHHHhh-----------cCCeEEEEcCcccccccccCCCCCCcHH
Q 013281 259 SEL-------IQKYLGDGP------K---LVREL-FRVADD-----------LSPSIVFIDEIDAVGTKRYDAHSGGERE 310 (446)
Q Consensus 259 s~l-------~~~~~g~~~------~---~v~~l-f~~a~~-----------~~p~IL~IDEid~l~~~r~~~~~~~~~~ 310 (446)
+.. ...|.+... . ....+ +..++. ....||+|+|+-.++... ...
T Consensus 79 p~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~ 151 (519)
T PF03215_consen 79 PVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSR 151 (519)
T ss_pred CCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHH
Confidence 211 011111100 0 01111 111111 235699999998765221 245
Q ss_pred HHHHHHHHHHHhcCCCCCC-CeEEEEEe-------CCC--------CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHH
Q 013281 311 IQRTMLELLNQLDGFDSRG-DVKVILAT-------NRI--------ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (446)
Q Consensus 311 ~~~~l~~lL~~ld~~~~~~-~v~vI~at-------n~~--------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~ 374 (446)
+...|.+++..- .. ++++|++- |.. ..+++.++...++ ..|.|-+-...-....|...
T Consensus 152 f~~~L~~~l~~~-----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI 225 (519)
T PF03215_consen 152 FREALRQYLRSS-----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRI 225 (519)
T ss_pred HHHHHHHHHHcC-----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHH
Confidence 566666666531 22 67777761 111 1356666654455 37888876666665655554
Q ss_pred HccC--------CCCCccC-HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 013281 375 TSRM--------TLADDVN-LEEFVMTKDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 375 ~~~~--------~~~~~~~-l~~la~~t~g~s~~di~~l~~~A~~~Al 413 (446)
+... ....... ++.|+..+. +||+..+..-.+++.
T Consensus 226 ~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 226 LKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 4322 1111122 566766554 499998887777776
No 222
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=6.2e-09 Score=104.46 Aligned_cols=133 Identities=20% Similarity=0.275 Sum_probs=92.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-------------------------EEEechhhh---------------
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATF-------------------------LRVVGSELI--------------- 262 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~-------------------------i~v~~s~l~--------------- 262 (446)
+.+.++||+||+|+||+++|+++|+.+.+.. ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4577899999999999999999998764421 111111000
Q ss_pred ---hh----h-cCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Q 013281 263 ---QK----Y-LGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (446)
Q Consensus 263 ---~~----~-~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 330 (446)
++ . -.-.-..++.+...+.. ....|++||++|.+ +.+....|+..|+ .+..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE-----EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE-----EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc-----CCCcC
Confidence 00 0 00122345555554432 23459999999999 5555666666665 34678
Q ss_pred eEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHH
Q 013281 331 VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (446)
Q Consensus 331 v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~ 374 (446)
+++|++|+.++.|.|.+++ |+ ..+.|++|+.++..++|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999998 98 58999999999988888654
No 223
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=2.5e-08 Score=99.28 Aligned_cols=147 Identities=20% Similarity=0.257 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE----EEEechhhhhh-------
Q 013281 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF----LRVVGSELIQK------- 264 (446)
Q Consensus 196 l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~----i~v~~s~l~~~------- 264 (446)
+..+.+.+...+..- +.+..+||+||+|+||+++|.++|+.+-+.- -...+..++..
T Consensus 9 ~~~~~~~l~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDAG------------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 566777777777652 4467899999999999999999998763310 00011111100
Q ss_pred hc-------C------CchHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC
Q 013281 265 YL-------G------DGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (446)
Q Consensus 265 ~~-------g------~~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 327 (446)
++ | -.-..++++.+.+... ...|++||++|.+ +...+..|+..|++ +
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 140 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----P 140 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----C
Confidence 00 1 1233455555544332 2369999999999 55666667766664 3
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHH
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 373 (446)
..++.+|++|+.++.+.|.+++ |+. .+.|+.|+.++....+..
T Consensus 141 p~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 141 SPGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CCCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHH
Confidence 5678899999999999999998 985 889999999888877764
No 224
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=2e-08 Score=100.86 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------------
Q 013281 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA------------------------ 251 (446)
Q Consensus 196 l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~------------------------ 251 (446)
+....+++...+.. -+.+..+||+||+|+||+++|.++|..+-+
T Consensus 7 l~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (334)
T PRK07993 7 LRPDYEQLVGSYQA------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_pred ChHHHHHHHHHHHc------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 45566666666654 145678999999999999999999997632
Q ss_pred cEEEEechhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC
Q 013281 252 TFLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (446)
Q Consensus 252 ~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 327 (446)
.|..+.... ....-.-..++++.+.+. .....|++||++|.+ +.+....|+..|++ +
T Consensus 75 D~~~i~p~~---~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 135 (334)
T PRK07993 75 DYYTLTPEK---GKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----P 135 (334)
T ss_pred CEEEEeccc---ccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----C
Confidence 112221100 000112334555544433 334569999999999 55666666666653 4
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHH
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 373 (446)
..++++|+.|+.++.+.|.+++ |+. .+.|++|+.++....+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 136 PENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred CCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 6789999999999999999998 986 789999998888877764
No 225
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=4.4e-08 Score=99.31 Aligned_cols=221 Identities=22% Similarity=0.247 Sum_probs=146.7
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----C-cEEEEechhhhh--
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----A-TFLRVVGSELIQ-- 263 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~----~-~~i~v~~s~l~~-- 263 (446)
..+.|.+.....+++++..++. ...+.++++.|-||||||.+...+..... . ..++++|..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 4578999999999999988643 35677899999999999999987766543 2 457888875321
Q ss_pred --------hh----cCCch-HHHHHHHHHHh-hc-CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCC
Q 013281 264 --------KY----LGDGP-KLVRELFRVAD-DL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR 328 (446)
Q Consensus 264 --------~~----~g~~~-~~v~~lf~~a~-~~-~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 328 (446)
.+ .+.+. ......|.... .. .+-+|++||+|.|+... +.+|..+.. +... ..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFe-wp~l-p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFE-WPKL-PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehh-cccC-Cc
Confidence 11 22221 12223343322 22 36699999999997432 233333332 2221 24
Q ss_pred CCeEEEEEeCCCCCCChhhcC----CCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCcc--CHHHHHHhCCCCcHHHHH
Q 013281 329 GDVKVILATNRIESLDPALLR----PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV--NLEEFVMTKDEFSGADIK 402 (446)
Q Consensus 329 ~~v~vI~atn~~~~ld~al~r----~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~--~l~~la~~t~g~s~~di~ 402 (446)
..+++|+.+|..+.-|..|-+ -+--...+.|++|+.++..+||+..+......... .++..|....+.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 578888899988765544432 12234589999999999999999998876654333 46677788888775 566
Q ss_pred ---HHHHHHHHHHHHhCC----------------CCccHHHHHHHHHHHHh
Q 013281 403 ---AICTEAGLLALRERR----------------MKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 403 ---~l~~~A~~~Al~~~~----------------~~It~~d~~~A~~~v~~ 434 (446)
.+|+.|.-+|-.+.+ ..|..+++..++.++..
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 457888777766543 33557888888877654
No 226
>PRK12377 putative replication protein; Provisional
Probab=98.88 E-value=1.3e-08 Score=97.79 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=67.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcC---CchHHHHHHHHHHhhcCCeEEEEcCcccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLG---DGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g---~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~ 298 (446)
..+++|+||||||||+||.|+|+.+ +..++.++..++...... ... ....++... ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~-~~~~~l~~l--~~~dLLiIDDlg~~~- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQ-SGEKFLQEL--CKVDLLVLDEIGIQR- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccc-hHHHHHHHh--cCCCEEEEcCCCCCC-
Confidence 3589999999999999999999976 567788888887764311 110 112233332 245799999997652
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 299 ~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
.+...+..|..+++.-.. ....+|+|||..
T Consensus 177 --------~s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 177 --------ETKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred --------CCHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 133456788888876432 234578889863
No 227
>PRK08181 transposase; Validated
Probab=98.88 E-value=1.2e-08 Score=99.20 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=68.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCC-chHHHHHHHHHHhhcCCeEEEEcCcccccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGD-GPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~-~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r 300 (446)
..+++|+||||||||+||.++++++ +..+++++..+++...... ........+... ..+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC--
Confidence 4679999999999999999999754 6678888888887754211 011122333332 2457999999987732
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+...+..|.++++...+ . -.+|+|||.+
T Consensus 182 -------~~~~~~~Lf~lin~R~~---~--~s~IiTSN~~ 209 (269)
T PRK08181 182 -------DQAETSVLFELISARYE---R--RSILITANQP 209 (269)
T ss_pred -------CHHHHHHHHHHHHHHHh---C--CCEEEEcCCC
Confidence 34456788888886532 1 2488888874
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=4.6e-08 Score=97.33 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=101.2
Q ss_pred cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------c
Q 013281 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-----------------------T 252 (446)
Q Consensus 196 l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~-----------------------~ 252 (446)
+....+.+...+..- +.+..+||+||.|+||+++|+++|+.+-+ .
T Consensus 8 l~~~~~~l~~~~~~~------------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDAG------------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 566777777777652 45678999999999999999999986532 1
Q ss_pred EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCC
Q 013281 253 FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR 328 (446)
Q Consensus 253 ~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 328 (446)
|+.+.... .++. -.-..++.+...+.. ....|++||++|.+ +...+..|+..|++ +.
T Consensus 76 ~~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp 136 (319)
T PRK06090 76 LHVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----PA 136 (319)
T ss_pred EEEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----CC
Confidence 22222110 0000 122345555444332 23469999999999 55566666666653 45
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHH
Q 013281 329 GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (446)
Q Consensus 329 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 373 (446)
.++.+|+.|+.++.+-|.+++ |+. .+.|+.|+.++..+.+..
T Consensus 137 ~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 137 PNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 689999999999999999998 985 899999999988887764
No 229
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.85 E-value=3.2e-08 Score=105.93 Aligned_cols=196 Identities=16% Similarity=0.129 Sum_probs=131.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhhhhhcCCch--HH--------HHHHHHHHhhcCCeEEEEcCc
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQKYLGDGP--KL--------VRELFRVADDLSPSIVFIDEI 293 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~~~~~g~~~--~~--------v~~lf~~a~~~~p~IL~IDEi 293 (446)
.||+|.|++|||||+++++++..+.. +|..+..+.-....+|... .. -..++..|. .+|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 58999999999999999999998764 8877655443344444331 10 112233332 279999999
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHHh------cCCC--CCCCeEEEEEeCCC---CCCChhhcCCCceeeEEEcCCC
Q 013281 294 DAVGTKRYDAHSGGEREIQRTMLELLNQL------DGFD--SRGDVKVILATNRI---ESLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 294 d~l~~~r~~~~~~~~~~~~~~l~~lL~~l------d~~~--~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~~~P 362 (446)
..+ ...++..|++-+.+- ++.. ...++.+|++-|.. ..|+++++. ||+..+.+..|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 888 667888888887642 2211 12357777764432 348899999 99999999988
Q ss_pred CHHHHH-------HHHHHH--HccCCCCCccCHHHHHHh--CCCC-cHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013281 363 DIKTRR-------RIFQIH--TSRMTLADDVNLEEFVMT--KDEF-SGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 363 ~~~er~-------~Il~~~--~~~~~~~~~~~l~~la~~--t~g~-s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
+..+.. .|.... +....+ .+..+..++.. ..|. |.+-...+++-|..+|..+++..|+.+|+..|..
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 765432 233222 222222 22223333322 2344 6677778889999999999999999999999999
Q ss_pred HHHhhhcc
Q 013281 431 KVMFKKKE 438 (446)
Q Consensus 431 ~v~~~~~~ 438 (446)
-++.+...
T Consensus 249 lvL~hR~~ 256 (584)
T PRK13406 249 LVLAPRAT 256 (584)
T ss_pred HHHHhhcc
Confidence 99987653
No 230
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.84 E-value=3.3e-08 Score=94.89 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=67.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCC---chHHHHHHHHHHhhcCCeEEEEcCccccccc
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGD---GPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~---~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~ 299 (446)
.+++|+|+||||||+|+.++|+++ +..++.++.+++....... .......++.... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 489999999999999999999987 6688888888887643211 1111223344332 45799999998763
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
.+......+.++++.-. .....+|++||..
T Consensus 176 -------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 176 -------ESRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred -------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 12334457777877532 2245688899863
No 231
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.7e-08 Score=109.30 Aligned_cols=127 Identities=27% Similarity=0.402 Sum_probs=97.2
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCC---CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh--
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGI---KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ-- 263 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~---~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~-- 263 (446)
.|+|+++++..|-++|...-. |. ++.-.++|.||.|+|||-||+++|..+ .-.|++++++++.+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~--------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA--------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc--------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 489999999999999987421 22 245569999999999999999999976 34899999997543
Q ss_pred -------hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCC------CC
Q 013281 264 -------KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR------GD 330 (446)
Q Consensus 264 -------~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~------~~ 330 (446)
.|+|..+ ...+.+..+....+||+|||||.. +..++..|++++..-.-.++. .+
T Consensus 635 kligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred hccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 2444332 346777777777899999999988 778888888888754322222 47
Q ss_pred eEEEEEeCC
Q 013281 331 VKVILATNR 339 (446)
Q Consensus 331 v~vI~atn~ 339 (446)
++||||+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 999999876
No 232
>PF13173 AAA_14: AAA domain
Probab=98.83 E-value=3.4e-08 Score=85.38 Aligned_cols=118 Identities=26% Similarity=0.333 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCC
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~--~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~ 303 (446)
+.++|+||.|||||++++.+++.+. ..++++++.+.......... +...+.........+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4689999999999999999998876 77888887765543211111 2222222222256899999999882
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----ChhhcCCCceeeEEEcCCCCHHH
Q 013281 304 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL----DPALLRPGRIDRKIEFPLPDIKT 366 (446)
Q Consensus 304 ~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l----d~al~r~gRf~~~i~~~~P~~~e 366 (446)
.....+..+.+. ..++.||+|+.....+ ...+ +||+. .+++.+.+..|
T Consensus 75 ------~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 234444555442 1356677776543333 2233 46875 78888887765
No 233
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.8e-08 Score=100.84 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=92.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh-cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY-LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~-~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~ 303 (446)
-.+|||+||||+|||+||-.+|...+.||+.+..++-.-.+ -.+.-..+..+|+.|+...-+||++|+|+.|..-- ..
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v-pI 616 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV-PI 616 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc-cc
Confidence 34699999999999999999999999999998766533221 11112457889999999888999999999985221 01
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCCC-hhhcCCCceeeEEEcCCCCH-HHHHHHHHH
Q 013281 304 HSGGEREIQRTMLELLNQLDGFDSRG-DVKVILATNRIESLD-PALLRPGRIDRKIEFPLPDI-KTRRRIFQI 373 (446)
Q Consensus 304 ~~~~~~~~~~~l~~lL~~ld~~~~~~-~v~vI~atn~~~~ld-~al~r~gRf~~~i~~~~P~~-~er~~Il~~ 373 (446)
+...+.-+.++|+-+|. ...+.+ +..|++||.+.+.|. -.++. .|+..+.+|..+. ++..+++..
T Consensus 617 GPRfSN~vlQaL~VllK---~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 617 GPRFSNLVLQALLVLLK---KQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred CchhhHHHHHHHHHHhc---cCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 11122333444444443 333344 455666665543322 13444 7888888887655 555555543
No 234
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.81 E-value=3.8e-08 Score=98.52 Aligned_cols=123 Identities=22% Similarity=0.338 Sum_probs=77.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcC---CchHHHHHHHHHHhhcCCeEEEEcCcccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLG---DGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g---~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~ 298 (446)
..+++|+||+|||||+||.++|+++ +..+++++..+++..... .........+.... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC-
Confidence 3689999999999999999999976 678888988888764421 11111111123322 34799999997662
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-C----CCChhhcCCCcee---eEEEcCCCCH
Q 013281 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI-E----SLDPALLRPGRID---RKIEFPLPDI 364 (446)
Q Consensus 299 ~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~-~----~ld~al~r~gRf~---~~i~~~~P~~ 364 (446)
.+...+..|..+++..-. .+-.+|+|||.. . .+++.+.+ |+. ..+.|...|.
T Consensus 260 --------~t~~~~~~Lf~iin~R~~----~~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 260 --------ITEFSKSELFNLINKRLL----RQKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGEDI 319 (329)
T ss_pred --------CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcCh
Confidence 234556778888876432 123478888863 2 23455555 542 2455554443
No 235
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.81 E-value=1.4e-08 Score=95.56 Aligned_cols=185 Identities=19% Similarity=0.302 Sum_probs=101.3
Q ss_pred cCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEec-h--------hh
Q 013281 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVG-S--------EL 261 (446)
Q Consensus 194 ~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v~~-s--------~l 261 (446)
+|.+..++.|.+.+.. .+...++|+||.|+|||+|++.+.+.... ..+++.. . .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 6888888999887765 23567999999999999999999998732 1111111 0 00
Q ss_pred -------------hhhhc-------------CCchHHHHHHHHHHhhcC-CeEEEEcCcccccccccCCCCCCcHHHHHH
Q 013281 262 -------------IQKYL-------------GDGPKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSGGEREIQRT 314 (446)
Q Consensus 262 -------------~~~~~-------------g~~~~~v~~lf~~a~~~~-p~IL~IDEid~l~~~r~~~~~~~~~~~~~~ 314 (446)
..... ......+..++....... ..||+|||++.+. .. ..........
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~~----~~~~~~~~~~ 143 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-IA----SEEDKDFLKS 143 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-BC----TTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-hc----ccchHHHHHH
Confidence 00000 112334555665555432 3899999999996 10 1123445555
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCC------CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC-C-CCccCH
Q 013281 315 MLELLNQLDGFDSRGDVKVILATNRIE------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT-L-ADDVNL 386 (446)
Q Consensus 315 l~~lL~~ld~~~~~~~v~vI~atn~~~------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~-~-~~~~~l 386 (446)
+..++... ....++.+|+++.... .-...+.. |+.. +.+++.+.++..+++........ + .++.++
T Consensus 144 l~~~~~~~---~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 144 LRSLLDSL---LSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHhhc---cccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 55555542 2245565555553311 11223433 7876 99999999999999999876651 1 245667
Q ss_pred HHHHHhCCCCcHHHHHH
Q 013281 387 EEFVMTKDEFSGADIKA 403 (446)
Q Consensus 387 ~~la~~t~g~s~~di~~ 403 (446)
+.+...+.| .|+.|..
T Consensus 218 ~~i~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 218 EEIYSLTGG-NPRYLQE 233 (234)
T ss_dssp HHHHHHHTT--HHHHHH
T ss_pred HHHHHHhCC-CHHHHhc
Confidence 888888887 5555543
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.6e-08 Score=99.67 Aligned_cols=132 Identities=18% Similarity=0.279 Sum_probs=93.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEEechhh---hhhh-cCCchHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA-------------------------TFLRVVGSEL---IQKY-LGDGPKLV 273 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~-------------------------~~i~v~~s~l---~~~~-~g~~~~~v 273 (446)
+.+..+||+||+|+|||++|+++|+.+.+ .|+.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45778999999999999999999997632 1333332110 0000 00123456
Q ss_pred HHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcC
Q 013281 274 RELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLR 349 (446)
Q Consensus 274 ~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r 349 (446)
+++.+.+.. ....|++||+++.+ +.+.+..++..|++.. .++.+|++|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~-----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP-----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc-----CCCEEEEEeCChHhChHHHHH
Confidence 766666543 23469999999999 6777888888887642 357788899988899999988
Q ss_pred CCceeeEEEcCCCCHHHHHHHHHH
Q 013281 350 PGRIDRKIEFPLPDIKTRRRIFQI 373 (446)
Q Consensus 350 ~gRf~~~i~~~~P~~~er~~Il~~ 373 (446)
|+ ..+.|++|+.++....+..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 88 4889999999888877754
No 237
>PRK06526 transposase; Provisional
Probab=98.73 E-value=2.3e-08 Score=96.62 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=64.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCC-chHHHHHHHHHHhhcCCeEEEEcCcccccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGD-GPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~-~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r 300 (446)
..+++|+||||||||+||.+++.++ +..++.++.++++...... ........+... ..+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~-- 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF-- 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC--
Confidence 5689999999999999999998864 5566667777666543211 001112222222 2467999999988731
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+...+..+.++++.... +..+|++||.+
T Consensus 174 -------~~~~~~~L~~li~~r~~-----~~s~IitSn~~ 201 (254)
T PRK06526 174 -------EPEAANLFFQLVSSRYE-----RASLIVTSNKP 201 (254)
T ss_pred -------CHHHHHHHHHHHHHHHh-----cCCEEEEcCCC
Confidence 34556677888875432 12378888874
No 238
>PRK06921 hypothetical protein; Provisional
Probab=98.67 E-value=2.1e-07 Score=90.67 Aligned_cols=103 Identities=22% Similarity=0.247 Sum_probs=62.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCccc-cccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDA-VGTK 299 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~-l~~~ 299 (446)
..+++|+||||||||+|+.+||+++ +..++++...+++....... ......+... ....+|+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCCC
Confidence 5689999999999999999999975 56777887777655321110 1111222222 2457999999954 2111
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
...+...+..|..+++.... .+-.+|+|||.
T Consensus 194 -----e~~t~~~~~~lf~iin~R~~----~~k~tIitsn~ 224 (266)
T PRK06921 194 -----PRATEWQIEQMYSVLNYRYL----NHKPILISSEL 224 (266)
T ss_pred -----ccCCHHHHHHHHHHHHHHHH----CCCCEEEECCC
Confidence 11123344567777775421 12336788886
No 239
>PRK09183 transposase/IS protein; Provisional
Probab=98.65 E-value=1.1e-07 Score=92.42 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=66.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCC-chHHHHHHHHHHhhcCCeEEEEcCcccccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGD-GPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~-~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r 300 (446)
..+++|+||||||||+||.+++... +..+..+++.++...+... ....+...+... ...+.+++|||++.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~-- 178 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF-- 178 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC--
Confidence 5679999999999999999997653 6677778877776543211 011133344432 23567999999987632
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+.+....|.++++.... .+ .+|+|||.+
T Consensus 179 -------~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 179 -------SQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred -------ChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 33445677888876432 12 378888874
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.64 E-value=6.6e-08 Score=88.57 Aligned_cols=101 Identities=24% Similarity=0.346 Sum_probs=63.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCccccccc
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~~-~~~v~~lf~~a~~~~p~IL~IDEid~l~~~ 299 (446)
...+++|+||||||||+||.++++++ +.++..++.++++...-... .......+.... ...+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee--
Confidence 46789999999999999999999865 67888899998887542210 111223333333 34799999996541
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
.+......+.++++...+ +-.+|+|||..
T Consensus 122 -------~~~~~~~~l~~ii~~R~~-----~~~tIiTSN~~ 150 (178)
T PF01695_consen 122 -------LSEWEAELLFEIIDERYE-----RKPTIITSNLS 150 (178)
T ss_dssp ---------HHHHHCTHHHHHHHHH-----T-EEEEEESS-
T ss_pred -------ecccccccchhhhhHhhc-----ccCeEeeCCCc
Confidence 134456677888876532 12577799863
No 241
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.62 E-value=1.4e-07 Score=93.68 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=64.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCccccccc
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~~-~~~v~~lf~~a~~~~p~IL~IDEid~l~~~ 299 (446)
..+|++|+||+|||||+||.|+|+++ +.++..+..++++....... ...+...+.... ...+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-
Confidence 35789999999999999999999987 67788888887765432110 011223333332 357999999976521
Q ss_pred ccCCCCCCcHHHH-HHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 300 RYDAHSGGEREIQ-RTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 300 r~~~~~~~~~~~~-~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+.... ..+..+++.-- .....+|+|||..
T Consensus 232 --------s~~~~~~ll~~Il~~R~----~~~~~ti~TSNl~ 261 (306)
T PRK08939 232 --------SSWVRDEVLGVILQYRM----QEELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHHHHHHHHHH----HCCCeEEEECCCC
Confidence 22222 33344544320 1345689999863
No 242
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.61 E-value=2.3e-07 Score=79.70 Aligned_cols=98 Identities=24% Similarity=0.321 Sum_probs=59.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEechhhhh----------hh----cC--CchHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST--------SATFLRVVGSELIQ----------KY----LG--DGPKLVRELFRVA 280 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~--------~~~~i~v~~s~l~~----------~~----~g--~~~~~v~~lf~~a 280 (446)
.+.++++||||+|||++++.+++.. ..+++.++++.... .. .. ........+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4569999999999999999999987 67888888765431 00 11 1233334444444
Q ss_pred hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 281 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
......+|+|||+|.+. ...+++.|..+.. ..++.||+++..
T Consensus 84 ~~~~~~~lviDe~~~l~--------------~~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF--------------SDEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH--------------THHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC--------------CHHHHHHHHHHHh---CCCCeEEEEECh
Confidence 54444599999999983 1223333333322 456777777654
No 243
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.61 E-value=2.7e-07 Score=89.33 Aligned_cols=118 Identities=21% Similarity=0.303 Sum_probs=72.7
Q ss_pred CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCCchH
Q 013281 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPK 271 (446)
Q Consensus 195 Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~~~~ 271 (446)
+...+...+...+... ....+++|+||||||||+||-|+++++ +..++.+..++++...-.....
T Consensus 87 ~~~~~l~~~~~~~~~~------------~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 87 IDKKALEDLASLVEFF------------ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred hhHHHHHHHHHHHHHh------------ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 3445555666655431 146789999999999999999999976 6788899999988753211110
Q ss_pred -HH-HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 272 -LV-RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 272 -~v-~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
.. ..+.... ....+|+|||+...- .+......+.+++...-. .... |+|||.+
T Consensus 155 ~~~~~~l~~~l--~~~dlLIiDDlG~~~---------~~~~~~~~~~q~I~~r~~---~~~~--~~tsN~~ 209 (254)
T COG1484 155 GRLEEKLLREL--KKVDLLIIDDIGYEP---------FSQEEADLLFQLISRRYE---SRSL--IITSNLS 209 (254)
T ss_pred CchHHHHHHHh--hcCCEEEEecccCcc---------CCHHHHHHHHHHHHHHHh---hccc--eeecCCC
Confidence 11 1122212 234799999997762 123334555555554322 1222 8899874
No 244
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.58 E-value=1.9e-06 Score=82.04 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=94.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~ 304 (446)
..+..++||+|||||..++.+|+.+|.+++.++|++..+ ...+..+|.-+... .+.+++||++.|
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 457789999999999999999999999999999998544 34566666555543 479999999999
Q ss_pred CCCcHHHHHHHHHHHHHhc----C-----------CCCCCCeEEEEEeCC----CCCCChhhcCCCceeeEEEcCCCCHH
Q 013281 305 SGGEREIQRTMLELLNQLD----G-----------FDSRGDVKVILATNR----IESLDPALLRPGRIDRKIEFPLPDIK 365 (446)
Q Consensus 305 ~~~~~~~~~~l~~lL~~ld----~-----------~~~~~~v~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P~~~ 365 (446)
+.++...+.+.+..+. . +.-..++.+++|.|. ...+|+.++. -| |.+.+..||..
T Consensus 97 ---~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 97 ---SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred ---hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 5666666655555431 1 011124556666663 3468888865 55 78999999875
Q ss_pred HHHHHHHHHHccCCCCCccCH-------HHHH-Hh-----CCCCcHHHHHHHHHHHHHH
Q 013281 366 TRRRIFQIHTSRMTLADDVNL-------EEFV-MT-----KDEFSGADIKAICTEAGLL 411 (446)
Q Consensus 366 er~~Il~~~~~~~~~~~~~~l-------~~la-~~-----t~g~s~~di~~l~~~A~~~ 411 (446)
. |.+..+....+.....+ -.++ .. ...|.-+.|+.++..|+..
T Consensus 171 ~---I~ei~L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~ 226 (231)
T PF12774_consen 171 L---IAEILLLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSL 226 (231)
T ss_dssp H---HHHHHHHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHH
Confidence 5 44444444443221111 1111 11 1236667788887777643
No 245
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.58 E-value=3.8e-07 Score=89.10 Aligned_cols=139 Identities=20% Similarity=0.335 Sum_probs=77.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-c--EEEEechhhhhhhcCCchHHHHHHHHHHh-----------hcCCeEEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSA-T--FLRVVGSELIQKYLGDGPKLVRELFRVAD-----------DLSPSIVFI 290 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~-~--~i~v~~s~l~~~~~g~~~~~v~~lf~~a~-----------~~~p~IL~I 290 (446)
.++|||+||+|||||++++.+-+.+.. . ...++++.... ...+..+.+..- .....|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 668999999999999999988776543 2 23444443211 112222111110 112349999
Q ss_pred cCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC-------CCCeEEEEEeCCCC---CCChhhcCCCceeeEEEcC
Q 013281 291 DEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS-------RGDVKVILATNRIE---SLDPALLRPGRIDRKIEFP 360 (446)
Q Consensus 291 DEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-------~~~v~vI~atn~~~---~ld~al~r~gRf~~~i~~~ 360 (446)
||+..-....+ +.....+.|-++++.-..++. -.++.+|+|++... .+++.++| .| ..+.++
T Consensus 107 DDlN~p~~d~y-----gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~ 178 (272)
T PF12775_consen 107 DDLNMPQPDKY-----GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIP 178 (272)
T ss_dssp ETTT-S---TT-----S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE--
T ss_pred cccCCCCCCCC-----CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEec
Confidence 99976543322 122233444444443211221 13688899887632 47788887 77 489999
Q ss_pred CCCHHHHHHHHHHHHcc
Q 013281 361 LPDIKTRRRIFQIHTSR 377 (446)
Q Consensus 361 ~P~~~er~~Il~~~~~~ 377 (446)
.|+.+....|+...+..
T Consensus 179 ~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQS 195 (272)
T ss_dssp --TCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhh
Confidence 99999999988776653
No 246
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.58 E-value=4.4e-06 Score=79.27 Aligned_cols=184 Identities=21% Similarity=0.228 Sum_probs=114.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEechh-----hhhhhc----CCc--------hHHHHHHHHHH-hhcCC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSE-----LIQKYL----GDG--------PKLVRELFRVA-DDLSP 285 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~---~~i~v~~s~-----l~~~~~----g~~--------~~~v~~lf~~a-~~~~p 285 (446)
-+.++|+-|||||+++|++...++- ..+.++... +...++ +.. +..-+.+.... +...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4778999999999999977776642 223333322 222111 111 11112222222 23456
Q ss_pred eEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCC------CceeeEEEc
Q 013281 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRP------GRIDRKIEF 359 (446)
Q Consensus 286 ~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~------gRf~~~i~~ 359 (446)
-++++||++.+. ......+.-+.+.-... .....++..... .|.+.++.+ -|++..|++
T Consensus 133 v~l~vdEah~L~-----------~~~le~Lrll~nl~~~~--~~~l~ivL~Gqp--~L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLN-----------DSALEALRLLTNLEEDS--SKLLSIVLIGQP--KLRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhC-----------hhHHHHHHHHHhhcccc--cCceeeeecCCc--ccchhhchHHHHhhhheEEEEEec
Confidence 899999999993 22233333333322222 233444444432 233322211 288877999
Q ss_pred CCCCHHHHHHHHHHHHccCCCC----CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 013281 360 PLPDIKTRRRIFQIHTSRMTLA----DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFK 426 (446)
Q Consensus 360 ~~P~~~er~~Il~~~~~~~~~~----~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~ 426 (446)
++.+.++-..++++++..-... .+..+..++..+.| .|+-|.++|..|...|...+...|+...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999998999999988765433 44457788888888 688999999999999999999999876653
No 247
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.52 E-value=2.7e-07 Score=93.53 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=61.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEechhhhhh-------hcCCchHHHHHHHHHHhhcCCeEEEEcCc
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA-TFLRVVGSELIQK-------YLGDGPKLVRELFRVADDLSPSIVFIDEI 293 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~-~~i~v~~s~l~~~-------~~g~~~~~v~~lf~~a~~~~p~IL~IDEi 293 (446)
..+++|++|||++|+|||+|+-.+.+.+.. .-.+++..+++.. +.+.. ..+..+...... ...+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 457899999999999999999999998765 3333443343321 11111 112222222222 2249999998
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 294 DAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 294 d~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+.- +..-...|..|+..+- ..++++|+|+|++
T Consensus 137 ~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 754 2222333444555442 3578999999983
No 248
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.49 E-value=1.2e-06 Score=94.41 Aligned_cols=227 Identities=23% Similarity=0.231 Sum_probs=129.7
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE-echhhhhhhcCCch
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV-VGSELIQKYLGDGP 270 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v-~~s~l~~~~~g~~~ 270 (446)
.|.|.+.+++.|.=.+-..... .+-....++..-+|||.|.||||||.|.+.+++.+...++.- .++.- +|-+.
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k-~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLTA 361 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKK-NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLTA 361 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcc-cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCcee
Confidence 5788888776654333221110 000000122334799999999999999999999776544321 11111 11111
Q ss_pred HHHHHHH--H---HH---hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc------CCC--CCCCeEEE
Q 013281 271 KLVRELF--R---VA---DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GFD--SRGDVKVI 334 (446)
Q Consensus 271 ~~v~~lf--~---~a---~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~vI 334 (446)
..+++-+ + .| -...++|++|||+|.+ +..-...+.+.+++=. |+. -.....|+
T Consensus 362 av~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm-----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvL 430 (682)
T COG1241 362 AVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM-----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVL 430 (682)
T ss_pred EEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC-----------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhh
Confidence 1111111 0 00 1124589999999998 4444556666665411 111 12346678
Q ss_pred EEeCCCC-------------CCChhhcCCCceeeEEEcC-CCCHHHHHH----HHHHHHccC------------------
Q 013281 335 LATNRIE-------------SLDPALLRPGRIDRKIEFP-LPDIKTRRR----IFQIHTSRM------------------ 378 (446)
Q Consensus 335 ~atn~~~-------------~ld~al~r~gRf~~~i~~~-~P~~~er~~----Il~~~~~~~------------------ 378 (446)
+|+|... .+++.|++ |||..+.+. .|+.+.-.. ++..|....
T Consensus 431 AAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~ 508 (682)
T COG1241 431 AAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDF 508 (682)
T ss_pred hhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcH
Confidence 8888753 47888999 999766654 355543333 444442110
Q ss_pred ---------------CCCCccCHHHHH-----HhC----------CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 379 ---------------TLADDVNLEEFV-----MTK----------DEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 379 ---------------~~~~~~~l~~la-----~~t----------~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
+...+...+.|. .+. --.+.++|.++++-|...|-.+.+..|+.+|...|
T Consensus 509 ~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eA 588 (682)
T COG1241 509 ELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEA 588 (682)
T ss_pred HHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 011111111111 111 12568999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 013281 429 KEKVMFKK 436 (446)
Q Consensus 429 ~~~v~~~~ 436 (446)
++-+....
T Consensus 589 i~lv~~~l 596 (682)
T COG1241 589 IRLVDFSL 596 (682)
T ss_pred HHHHHHHH
Confidence 99877544
No 249
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.49 E-value=3.1e-06 Score=98.53 Aligned_cols=178 Identities=20% Similarity=0.323 Sum_probs=103.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEech--
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF---LRVVGS-- 259 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~---i~v~~s-- 259 (446)
.+...+.+++|.+..++++.+.+.. .....+-|.|+|++|+||||||+++++.....| +.+...
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v 246 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFI 246 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccc
Confidence 4556788999999999999988764 223456689999999999999999998765433 111110
Q ss_pred -hhhhhhcC----C---c----hHHHHH-------------HHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHH
Q 013281 260 -ELIQKYLG----D---G----PKLVRE-------------LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRT 314 (446)
Q Consensus 260 -~l~~~~~g----~---~----~~~v~~-------------lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~ 314 (446)
.....+.. . . ...+.. .....-...+.+|+||+++.. ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------~~ 310 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------DV 310 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------HH
Confidence 00000000 0 0 000011 111112234578999998654 11
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCH----HHHH
Q 013281 315 MLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNL----EEFV 390 (446)
Q Consensus 315 l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l----~~la 390 (446)
+..+....+.+ ..+..||+||.... +++...+++.++++.|+.++..++|..++...... ..++ .+++
T Consensus 311 l~~L~~~~~~~--~~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv 382 (1153)
T PLN03210 311 LDALAGQTQWF--GSGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVA 382 (1153)
T ss_pred HHHHHhhCccC--CCCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHH
Confidence 22222222222 23456777877543 33223456789999999999999999887543322 2222 3456
Q ss_pred HhCCCCc
Q 013281 391 MTKDEFS 397 (446)
Q Consensus 391 ~~t~g~s 397 (446)
..+.|+.
T Consensus 383 ~~c~GLP 389 (1153)
T PLN03210 383 LRAGNLP 389 (1153)
T ss_pred HHhCCCc
Confidence 6677754
No 250
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=1.5e-06 Score=85.22 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------EEEEechhh
Q 013281 198 AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT----------------FLRVVGSEL 261 (446)
Q Consensus 198 ~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~----------------~i~v~~s~l 261 (446)
...+.+...+..- +.+..+||+||+|+||+.+|.++|..+-+. +..+....
T Consensus 4 ~~~~~L~~~i~~~------------rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~- 70 (290)
T PRK05917 4 AAWEALIQRVRDQ------------KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG- 70 (290)
T ss_pred HHHHHHHHHHHcC------------CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-
Confidence 3455666666651 446789999999999999999999976431 11111000
Q ss_pred hhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 262 IQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
.+. .-.-..++++...+.. ....|++||++|.+ +.+.+..|+..|++ +..++++|+.|
T Consensus 71 ~~~--~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~ 132 (290)
T PRK05917 71 KGR--LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTS 132 (290)
T ss_pred CCC--cCcHHHHHHHHHHHhhCccCCCceEEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEe
Confidence 000 0123344555444432 23469999999999 66677777777764 35789999999
Q ss_pred CCCCCCChhhcCCCceeeEEEcCCC
Q 013281 338 NRIESLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 338 n~~~~ld~al~r~gRf~~~i~~~~P 362 (446)
+.++.+.|.+++ |+. .+.|+++
T Consensus 133 ~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 133 AKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CChhhCcHHHHh--cce-EEEccch
Confidence 999999999998 885 6777754
No 251
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.48 E-value=4.5e-06 Score=86.45 Aligned_cols=214 Identities=15% Similarity=0.205 Sum_probs=117.0
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
..|++++.+.+.+++.=...-+.++++++... .++-.. -..+-+||+||+||||||.++.++.+++..++.-..
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~---~~~~~~---l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQV---AEFTPK---LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHH---HHhccC---CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 45788889999999988888888888888710 000001 123458899999999999999999999987765441
Q ss_pred hh-------------hhh-hhcCCchHHHHHHHHHHhh------------cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 259 SE-------------LIQ-KYLGDGPKLVRELFRVADD------------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 259 s~-------------l~~-~~~g~~~~~v~~lf~~a~~------------~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
+- ... .|.... .........+.. ..+.+|+|||+-..+.. . ..+.+
T Consensus 144 pi~~~~~~~~h~~t~~~~~~~~s~L-~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~------d-~~~~f 215 (634)
T KOG1970|consen 144 PINLKEPENLHNETSFLMFPYQSQL-AVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR------D-DSETF 215 (634)
T ss_pred CccccccccccccchhcccchhhHH-HHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh------h-hHHHH
Confidence 11 001 111111 111112222211 13559999999776522 1 23333
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCC--CCCCChhhcC------CCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-C-
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNR--IESLDPALLR------PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-D- 382 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~--~~~ld~al~r------~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~- 382 (446)
+.+++++.... .-.+ ||+.|+. .+..++..+. ..|+. .|.|.+-...-.+..|+..+...... .
T Consensus 216 ~evL~~y~s~g----~~Pl-If~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~ 289 (634)
T KOG1970|consen 216 REVLRLYVSIG----RCPL-IFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSG 289 (634)
T ss_pred HHHHHHHHhcC----CCcE-EEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccC
Confidence 43444443322 1233 3344432 2333322221 22554 77887766666666777666543322 1
Q ss_pred -cc-CHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 013281 383 -DV-NLEEFVMTKDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 383 -~~-~l~~la~~t~g~s~~di~~l~~~A~~~Al 413 (446)
.+ +...+-..+.+ +++||+..++...+.+.
T Consensus 290 ~k~~~~~~v~~i~~~-s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 290 IKVPDTAEVELICQG-SGGDIRSAINSLQLSSS 321 (634)
T ss_pred CcCchhHHHHHHHHh-cCccHHHHHhHhhhhcc
Confidence 11 12233333333 45699998887777753
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.48 E-value=9.5e-07 Score=78.13 Aligned_cols=110 Identities=23% Similarity=0.359 Sum_probs=64.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh----------------------cCC--chHHHHHHHHHH
Q 013281 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY----------------------LGD--GPKLVRELFRVA 280 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~----------------------~g~--~~~~v~~lf~~a 280 (446)
++|+||||+|||+++..++... +.+++.++........ ... ........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 4566666554322100 000 111112234555
Q ss_pred hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 281 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
....|.+|+|||+..+.........+......+.+..++.... ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6667899999999988643211001122334455555555443 24677777776543
No 253
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.47 E-value=2.3e-06 Score=89.76 Aligned_cols=223 Identities=20% Similarity=0.187 Sum_probs=131.2
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech----------
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS---------- 259 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s---------- 259 (446)
|-.|.|.+.++.-|.=.+-.-...... ....++..-+|+|+|.|||||+-+.++++.-+...++. ++.
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaSSaAGLTaa 421 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKASSAAGLTAA 421 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcccccccceEE
Confidence 445788888877765444321111110 22234444579999999999999999999877654432 111
Q ss_pred ----hhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc------CCC--C
Q 013281 260 ----ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GFD--S 327 (446)
Q Consensus 260 ----~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~ 327 (446)
+-.+.|.-+.- .+-.| ..+|-+|||+|.+. ..-|..+.+.+++=- |.. -
T Consensus 422 VvkD~esgdf~iEAG-----ALmLA---DnGICCIDEFDKMd-----------~~dqvAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 422 VVKDEESGDFTIEAG-----ALMLA---DNGICCIDEFDKMD-----------VKDQVAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred EEecCCCCceeeecC-----cEEEc---cCceEEechhcccC-----------hHhHHHHHHHHHhheehheecceEEee
Confidence 11111110000 01111 23799999999993 223556666665411 110 1
Q ss_pred CCCeEEEEEeCCCC-------------CCChhhcCCCceee-EEEcCCCCHHHHHHHHHHHHccCCC-CC------ccCH
Q 013281 328 RGDVKVILATNRIE-------------SLDPALLRPGRIDR-KIEFPLPDIKTRRRIFQIHTSRMTL-AD------DVNL 386 (446)
Q Consensus 328 ~~~v~vI~atn~~~-------------~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~~~~~~~-~~------~~~l 386 (446)
..+..||+|+|... .+++++++ |||. .|-+..|++..-+.|-++.+..... .. ....
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~ 560 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTL 560 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccH
Confidence 12355788888642 47788988 9996 3445667776666655544332110 00 0000
Q ss_pred ----------------------HHHH---------------HhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 387 ----------------------EEFV---------------MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 387 ----------------------~~la---------------~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
+.|. ..+...+.++|.++++.+...|..+.+..||.+|..+|+
T Consensus 561 e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~ 640 (764)
T KOG0480|consen 561 EQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAV 640 (764)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHH
Confidence 1111 012256789999999999989988889999999999999
Q ss_pred HHHHhh
Q 013281 430 EKVMFK 435 (446)
Q Consensus 430 ~~v~~~ 435 (446)
+-+...
T Consensus 641 eLlk~S 646 (764)
T KOG0480|consen 641 ELLKKS 646 (764)
T ss_pred HHHHhh
Confidence 876554
No 254
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.45 E-value=1.7e-07 Score=94.31 Aligned_cols=193 Identities=22% Similarity=0.231 Sum_probs=105.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-----hhc---CCchHHH-HHHHHHHhhcCCeEEEEcCccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-----KYL---GDGPKLV-RELFRVADDLSPSIVFIDEIDA 295 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-----~~~---g~~~~~v-~~lf~~a~~~~p~IL~IDEid~ 295 (446)
.-++||+|.||||||.|.+.+++-....+ ++++..... ... ..+.-.+ ...+-.|. .+|++|||+|.
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad---~GiccIDe~dk 132 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLAD---GGICCIDEFDK 132 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCT---TSEEEECTTTT
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCCchhccc---Cceeeeccccc
Confidence 34799999999999999998876554433 333322110 000 0000000 11233333 38999999999
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-------------CCChhhcCCCcee
Q 013281 296 VGTKRYDAHSGGEREIQRTMLELLNQLD------GF--DSRGDVKVILATNRIE-------------SLDPALLRPGRID 354 (446)
Q Consensus 296 l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~--~~~~~v~vI~atn~~~-------------~ld~al~r~gRf~ 354 (446)
+ .......|.+.+++-. |. .-..+..|++|+|... .+++.|++ |||
T Consensus 133 ~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFD 199 (331)
T PF00493_consen 133 M-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFD 199 (331)
T ss_dssp -------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-S
T ss_pred c-----------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcC
Confidence 9 3445667777776411 10 0123578999998754 47788988 999
Q ss_pred eEEEc-CCCCHHHHHHHHHHHHccCCCCC------------ccC------H-----------------HHHHHhC-----
Q 013281 355 RKIEF-PLPDIKTRRRIFQIHTSRMTLAD------------DVN------L-----------------EEFVMTK----- 393 (446)
Q Consensus 355 ~~i~~-~~P~~~er~~Il~~~~~~~~~~~------------~~~------l-----------------~~la~~t----- 393 (446)
..+.+ ..|+.+.-..+.+..+....... ..+ + +.|....
T Consensus 200 Lif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~ 279 (331)
T PF00493_consen 200 LIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRK 279 (331)
T ss_dssp EEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCH
T ss_pred EEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcc
Confidence 77665 45665555555544333221110 011 1 1111110
Q ss_pred --------CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 013281 394 --------DEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 394 --------~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~ 434 (446)
...+.+.|..+++-|...|..+.+..|+.+|+..|+.-+..
T Consensus 280 ~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 280 ESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp CHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 12455678889999999998889999999999999986544
No 255
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.43 E-value=2.1e-06 Score=82.63 Aligned_cols=199 Identities=21% Similarity=0.278 Sum_probs=109.5
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHH------HhCCcEEEEechhhhhhhc-CCchHHHHHHHHHH--------hhcC
Q 013281 220 IGIKPPKGVILYGEPGTGKTLLAKAVAN------STSATFLRVVGSELIQKYL-GDGPKLVRELFRVA--------DDLS 284 (446)
Q Consensus 220 ~g~~~~~~vLL~GppGtGKT~Laraia~------~~~~~~i~v~~s~l~~~~~-g~~~~~v~~lf~~a--------~~~~ 284 (446)
..+.....+||.||.|.||++||+.|.. ++..+|+.|+|..+.+... ...-..+...|.-| +...
T Consensus 203 va~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsad 282 (531)
T COG4650 203 VAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSAD 282 (531)
T ss_pred HHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCC
Confidence 3455666799999999999999999875 5677999999987754210 00001111112111 2223
Q ss_pred CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCC-------CCCChhhcCCC
Q 013281 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRGDVKVILATNRI-------ESLDPALLRPG 351 (446)
Q Consensus 285 p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~~~~v~vI~atn~~-------~~ld~al~r~g 351 (446)
.+++|+|||..|+. +-|..|+..+++-.-+. ...++.+|+.|-+- ..+...|.-
T Consensus 283 ggmlfldeigelga-----------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~a-- 349 (531)
T COG4650 283 GGMLFLDEIGELGA-----------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA-- 349 (531)
T ss_pred CceEehHhhhhcCc-----------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHH--
Confidence 57999999999953 23566666666533221 12356667766431 122233333
Q ss_pred ceeeEEEcCCCCHHHHHHH--------HHHHHccCCCCCccCH----HHHHHhC-----CCCcHHHHHHHHHHHHHHHHH
Q 013281 352 RIDRKIEFPLPDIKTRRRI--------FQIHTSRMTLADDVNL----EEFVMTK-----DEFSGADIKAICTEAGLLALR 414 (446)
Q Consensus 352 Rf~~~i~~~~P~~~er~~I--------l~~~~~~~~~~~~~~l----~~la~~t-----~g~s~~di~~l~~~A~~~Al~ 414 (446)
|+. ...|.+|...+|.+= +..|.....-....+. ..|+-.+ ...+-+++.+-+++.+.+|
T Consensus 350 rin-lwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatla-- 426 (531)
T COG4650 350 RIN-LWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLA-- 426 (531)
T ss_pred hhh-eeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHh--
Confidence 553 567778877777652 2333332222111111 1222111 1124466666666655554
Q ss_pred hCCCCccHHHHHHHHHHHHhh
Q 013281 415 ERRMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 415 ~~~~~It~~d~~~A~~~v~~~ 435 (446)
....||.+-++.-+.+.-+.
T Consensus 427 -d~grit~~~ve~ei~rlr~~ 446 (531)
T COG4650 427 -DSGRITLDVVEDEINRLRYN 446 (531)
T ss_pred -cCCceeHHHHHHHHHHHHHH
Confidence 45667777766666655544
No 256
>PF05729 NACHT: NACHT domain
Probab=98.41 E-value=3.8e-06 Score=74.68 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=76.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---------cEEEEechhhhhh------------hcCCchHHHHH-HHHHHhhcC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSA---------TFLRVVGSELIQK------------YLGDGPKLVRE-LFRVADDLS 284 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~---------~~i~v~~s~l~~~------------~~g~~~~~v~~-lf~~a~~~~ 284 (446)
-++|+|+||+|||++++.++..+.. .++.+.+...... ........+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4889999999999999999976521 1223333322211 11111111111 122333445
Q ss_pred CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CChhhcCCCceeeEEEcCCC
Q 013281 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES--LDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 285 p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~--ld~al~r~gRf~~~i~~~~P 362 (446)
..+|+||.+|.+...... .........+..++.. ....++.+|.++..... +...+.. ...+.++..
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 679999999999532210 0111223334444443 12345667777654222 2222211 146889999
Q ss_pred CHHHHHHHHHHHHcc
Q 013281 363 DIKTRRRIFQIHTSR 377 (446)
Q Consensus 363 ~~~er~~Il~~~~~~ 377 (446)
+.++..++++.++..
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999888753
No 257
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.41 E-value=8.8e-06 Score=79.62 Aligned_cols=173 Identities=21% Similarity=0.227 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHH--hCCcE---EEEechh------hhh--
Q 013281 197 DAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS--TSATF---LRVVGSE------LIQ-- 263 (446)
Q Consensus 197 ~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~--~~~~~---i~v~~s~------l~~-- 263 (446)
+..+++|.+.+... ....+.|.|+|++|+|||+||..+++. ....| +.++.+. +..
T Consensus 2 e~~~~~l~~~L~~~-----------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN-----------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT-----------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-----------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 45667777766652 134566999999999999999999987 33322 2222221 111
Q ss_pred -hhcC----------CchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 264 -KYLG----------DGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 264 -~~~g----------~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
..++ ........+.+.. ...+++|+||+++... .+..+...+.. ...+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~~k 131 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEE----------------DLEELREPLPS--FSSGSK 131 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHH----------------HH-------HC--HHSS-E
T ss_pred cccccccccccccccccccccccchhhh-ccccceeeeeeecccc----------------ccccccccccc--cccccc
Confidence 0111 1122233333333 3458999999997651 12122211111 123577
Q ss_pred EEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC----CCCccCHHHHHHhCCCCcHHHHHHH
Q 013281 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LADDVNLEEFVMTKDEFSGADIKAI 404 (446)
Q Consensus 333 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~----~~~~~~l~~la~~t~g~s~~di~~l 404 (446)
||.||...... ...- .-...+++...+.++..++|..+..... -..+.....|+..+.| .|--|+.+
T Consensus 132 ilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 132 ILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp EEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccc-cccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 88888654321 1111 1146899999999999999998876543 1112235688888887 44445444
No 258
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.7e-05 Score=77.98 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=91.5
Q ss_pred cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-------EEE-echhhhhh---
Q 013281 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF-------LRV-VGSELIQK--- 264 (446)
Q Consensus 196 l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~-------i~v-~~s~l~~~--- 264 (446)
+..+++.+..++..- +.+..+||+|| +||+++|+++|..+-+.- -.. +|..+...
T Consensus 7 q~~~~~~L~~~~~~~------------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQD------------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHcC------------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 456777777777652 45678999996 689999999998653311 000 01111100
Q ss_pred ---hc---C--CchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 265 ---YL---G--DGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 265 ---~~---g--~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
++ | -.-..++++...+.. ....|++||++|.+ +......|+..|++ +..+++
T Consensus 73 D~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE-----Pp~~t~ 136 (290)
T PRK07276 73 DVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE-----PQSEIY 136 (290)
T ss_pred CeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC-----CCCCeE
Confidence 00 1 123455655554432 23469999999999 55556666666553 356789
Q ss_pred EEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHH
Q 013281 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372 (446)
Q Consensus 333 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~ 372 (446)
+|+.|+.++.+-|.+++ |+. .+.|+. +.++..+++.
T Consensus 137 ~iL~t~~~~~lLpTI~S--Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 137 IFLLTNDENKVLPTIKS--RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEECChhhCchHHHH--cce-eeeCCC-cHHHHHHHHH
Confidence 99999999999999998 984 788876 5555555554
No 259
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.32 E-value=2.1e-05 Score=83.31 Aligned_cols=133 Identities=27% Similarity=0.362 Sum_probs=77.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe-chhhhh--hhc---CCchHHHHHHHHHHhhcCCeEEEEcCccccccc
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQ--KYL---GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~-~s~l~~--~~~---g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~ 299 (446)
-+|||+|.||||||.+.+.+++-+..-.+.-. ++.-.+ .|+ +++.+.+-+-=.. -....+|-+|||+|.+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGAL-VLSD~GiCCIDEFDKM--- 538 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGAL-VLSDNGICCIDEFDKM--- 538 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcE-EEcCCceEEchhhhhh---
Confidence 46999999999999999999997765433211 111100 011 1111111000000 0113479999999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHh------cCCC--CCCCeEEEEEeCCCC-------------CCChhhcCCCceeeEEE
Q 013281 300 RYDAHSGGEREIQRTMLELLNQL------DGFD--SRGDVKVILATNRIE-------------SLDPALLRPGRIDRKIE 358 (446)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l------d~~~--~~~~v~vI~atn~~~-------------~ld~al~r~gRf~~~i~ 358 (446)
+......|.+.+++= .|+- -....-||+++|... +|+|.|++ |||.++-
T Consensus 539 --------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyl 608 (804)
T KOG0478|consen 539 --------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFL 608 (804)
T ss_pred --------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEE
Confidence 444567777777641 1211 123567899998532 58899999 9996554
Q ss_pred -cCCCCHHHHHHHHH
Q 013281 359 -FPLPDIKTRRRIFQ 372 (446)
Q Consensus 359 -~~~P~~~er~~Il~ 372 (446)
+..||+..-+.|..
T Consensus 609 llD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 609 LLDKPDERSDRRLAD 623 (804)
T ss_pred EecCcchhHHHHHHH
Confidence 45566654444443
No 260
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=1.9e-05 Score=76.00 Aligned_cols=121 Identities=11% Similarity=0.087 Sum_probs=79.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-----EEE-echhhhhh------hc-----CCchHHHHHHHHHHhh---
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATF-----LRV-VGSELIQK------YL-----GDGPKLVRELFRVADD--- 282 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~-----i~v-~~s~l~~~------~~-----g~~~~~v~~lf~~a~~--- 282 (446)
.++..+||+||+|+||..+|.++|..+-+.- -.. +|..+... ++ .-....++++......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3577899999999999999999998653210 000 00001000 00 1123344444443321
Q ss_pred --cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcC
Q 013281 283 --LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360 (446)
Q Consensus 283 --~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~ 360 (446)
....|++|+++|.+ +.+....|+.+|++ +..++.+|+.|+.++.+.|.+++ |+. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 23579999999999 55566666666653 46789999999999999999998 885 56677
Q ss_pred CC
Q 013281 361 LP 362 (446)
Q Consensus 361 ~P 362 (446)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 66
No 261
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.27 E-value=2.7e-06 Score=79.63 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=51.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh----cC-------------------CchHHHH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY----LG-------------------DGPKLVR 274 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~----~g-------------------~~~~~v~ 274 (446)
|+....-++|+||||||||+++..++... +...++++..++.... .. +....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 66777789999999999999999988643 5567777775421100 00 0011233
Q ss_pred HHHHHHhhcCCeEEEEcCcccccc
Q 013281 275 ELFRVADDLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 275 ~lf~~a~~~~p~IL~IDEid~l~~ 298 (446)
.+...+....+++|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 344445555789999999998853
No 262
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=3.4e-05 Score=76.35 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------cEEEEechhhhhh
Q 013281 198 AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-------------TFLRVVGSELIQK 264 (446)
Q Consensus 198 ~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~-------------~~i~v~~s~l~~~ 264 (446)
.+++.++..+..- +.+...||+|+.|+||+.+|+++++.+-+ .+..++... .
T Consensus 3 ~~~~~l~~~i~~~------------~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~ 67 (299)
T PRK07132 3 NWIKFLDNSATQN------------KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---K 67 (299)
T ss_pred hHHHHHHHHHHhC------------CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---C
Confidence 4556666666541 23456889999999999999999998622 122232000 0
Q ss_pred hcCCchHHHHHHHHHHhh-----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 265 YLGDGPKLVRELFRVADD-----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~-----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
......++.+.+.... ....|++||++|.+ +...+..|+..|++ +..++.+|+.|+.
T Consensus 68 --~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~ 129 (299)
T PRK07132 68 --DLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKN 129 (299)
T ss_pred --cCCHHHHHHHHHHhccCCcccCCceEEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCC
Confidence 0122345555444422 24569999999988 44455666666654 3567888888888
Q ss_pred CCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHH
Q 013281 340 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (446)
Q Consensus 340 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 373 (446)
++.+-+.+++ |+. .++|.+++.++....+..
T Consensus 130 ~~kll~TI~S--Rc~-~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 130 INKVLPTIVS--RCQ-VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred hHhChHHHHh--CeE-EEECCCCCHHHHHHHHHH
Confidence 8889899988 884 899999998888777664
No 263
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.22 E-value=1.1e-05 Score=79.76 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=61.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-EEEechhhhh-------hhcCCchHHHHHHHHHHhhcCCeEEEEcCc
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATF-LRVVGSELIQ-------KYLGDGPKLVRELFRVADDLSPSIVFIDEI 293 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~~~-i~v~~s~l~~-------~~~g~~~~~v~~lf~~a~~~~p~IL~IDEi 293 (446)
..+++|++|||+-|.|||+|.-.....+...- .++....+.. ...|+..-.-...-+.+. ...||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~--~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA--ETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh--cCCEEEeeee
Confidence 45789999999999999999999998876532 3343333332 112332111111111111 2359999998
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCC
Q 013281 294 DAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IESL 343 (446)
Q Consensus 294 d~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~-~~~l 343 (446)
.-- +..-...|..|++.|- ..+|.+++|+|. |+.|
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNL 175 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHh
Confidence 643 2222344455665553 247999999997 4443
No 264
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.19 E-value=1.3e-05 Score=83.78 Aligned_cols=80 Identities=28% Similarity=0.446 Sum_probs=57.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh------cCC--------chHHHHHHHHHHhhc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY------LGD--------GPKLVRELFRVADDL 283 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~------~g~--------~~~~v~~lf~~a~~~ 283 (446)
|+.+...++|+|+||+|||+|+..++... +..+++++..+-.... +|. .+..+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67777789999999999999999998765 5677888775533211 111 112245566666777
Q ss_pred CCeEEEEcCcccccccc
Q 013281 284 SPSIVFIDEIDAVGTKR 300 (446)
Q Consensus 284 ~p~IL~IDEid~l~~~r 300 (446)
.|.+|+||.+..+....
T Consensus 156 ~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPE 172 (446)
T ss_pred CCCEEEEechhhhcccc
Confidence 89999999999886543
No 265
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.18 E-value=7.2e-06 Score=91.05 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=130.3
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCC-CchhhhhhCCCCCc--eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLT-HPELYEDIGIKPPK--GVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~-~~~~~~~~g~~~~~--~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
.+.+++.+.+..++.|.......+.+++...-. .+..|...+..... .++++||||+|||+.+.++|.+++..++.+
T Consensus 309 ~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~ 388 (871)
T KOG1968|consen 309 GWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEK 388 (871)
T ss_pred ccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeec
Confidence 456666667777777777777777776665311 11122221111111 268999999999999999999999999999
Q ss_pred echhhhhhh-----cCC--chHHHHHHHH---H--HhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC
Q 013281 257 VGSELIQKY-----LGD--GPKLVRELFR---V--ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG 324 (446)
Q Consensus 257 ~~s~l~~~~-----~g~--~~~~v~~lf~---~--a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 324 (446)
+.+...+++ ++. ....+...|. . .....-.||++||+|.+.. .++.....+..+...
T Consensus 389 Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~k--- 457 (871)
T KOG1968|consen 389 NASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCKK--- 457 (871)
T ss_pred CccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHHh---
Confidence 988655432 111 1222333330 0 0011123999999999853 244445555566552
Q ss_pred CCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCC-CCccCHHHHHHhCCCCcHHHHHH
Q 013281 325 FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL-ADDVNLEEFVMTKDEFSGADIKA 403 (446)
Q Consensus 325 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~-~~~~~l~~la~~t~g~s~~di~~ 403 (446)
....+|+++|.........+. |....++|+.|+....+.-+...+....+ -.+..++++...+ ++||++
T Consensus 458 ----s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~ 527 (871)
T KOG1968|consen 458 ----SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQ 527 (871)
T ss_pred ----ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHH
Confidence 235588999876655443433 54457999999999988877666544332 2344567777665 568888
Q ss_pred HHHHHHHH
Q 013281 404 ICTEAGLL 411 (446)
Q Consensus 404 l~~~A~~~ 411 (446)
++..-.++
T Consensus 528 ~i~~lq~~ 535 (871)
T KOG1968|consen 528 IIMQLQFW 535 (871)
T ss_pred HHHHHhhh
Confidence 77665555
No 266
>PF14516 AAA_35: AAA-like domain
Probab=98.17 E-value=0.00033 Score=70.53 Aligned_cols=186 Identities=18% Similarity=0.131 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh-------
Q 013281 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK------- 264 (446)
Q Consensus 195 Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~------- 264 (446)
....+-+++.+.+..| +.-+.|+||..+|||+|...+.+.+ +...+.+++..+-..
T Consensus 15 ~R~~~e~~~~~~i~~~--------------G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 15 ERPPAEQECYQEIVQP--------------GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CchHHHHHHHHHHhcC--------------CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHH
Confidence 3444566666666542 5569999999999999999887655 566677766543210
Q ss_pred -----------hcCC-------------chHHHHHHHHH---HhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHH
Q 013281 265 -----------YLGD-------------GPKLVRELFRV---ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLE 317 (446)
Q Consensus 265 -----------~~g~-------------~~~~v~~lf~~---a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~ 317 (446)
.++- ........|+. .....|-||+|||||.++... .....++.
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~---------~~~~dF~~ 151 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP---------QIADDFFG 151 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc---------chHHHHHH
Confidence 0100 11111222332 112357899999999996321 22233344
Q ss_pred HHHHhcC----CCCCCCeEEEEEeCCCCCCChhh-cCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHh
Q 013281 318 LLNQLDG----FDSRGDVKVILATNRIESLDPAL-LRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMT 392 (446)
Q Consensus 318 lL~~ld~----~~~~~~v~vI~atn~~~~ld~al-~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~ 392 (446)
+|..... ...-..+.+|++......+.... .+|-.+...+.++..+.++...+++.|-... ... .++.|...
T Consensus 152 ~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~~~-~~~~l~~~ 228 (331)
T PF14516_consen 152 LLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--SQE-QLEQLMDW 228 (331)
T ss_pred HHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--CHH-HHHHHHHH
Confidence 4433321 11123455555544322222121 2333455678889899999999988875432 222 27888888
Q ss_pred CCCCcHHHHHHHHHH
Q 013281 393 KDEFSGADIKAICTE 407 (446)
Q Consensus 393 t~g~s~~di~~l~~~ 407 (446)
+.|. |.-+..+|..
T Consensus 229 tgGh-P~Lv~~~~~~ 242 (331)
T PF14516_consen 229 TGGH-PYLVQKACYL 242 (331)
T ss_pred HCCC-HHHHHHHHHH
Confidence 8873 4444444443
No 267
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.13 E-value=8.2e-06 Score=68.25 Aligned_cols=23 Identities=43% Similarity=0.772 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 013281 228 VILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~ 250 (446)
|+||||||+|||++|+.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998664
No 268
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.11 E-value=2e-05 Score=72.06 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=59.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh------cCC-----------------------ch-----
Q 013281 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY------LGD-----------------------GP----- 270 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~------~g~-----------------------~~----- 270 (446)
++++||||||||+++..++... +.++++++..+-.... .|. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887643 5566666543211100 000 00
Q ss_pred HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 271 KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 271 ~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
.....+...+....|.+|+||++..+... ........+..++..+.. .++.+|++++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 11233444455567899999999887521 112233444555555432 255677776543
No 269
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.10 E-value=2.4e-05 Score=79.81 Aligned_cols=79 Identities=29% Similarity=0.494 Sum_probs=55.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh------hcCC--------chHHHHHHHHHHhhc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK------YLGD--------GPKLVRELFRVADDL 283 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~------~~g~--------~~~~v~~lf~~a~~~ 283 (446)
|+.+..-++|+|+||+|||+|+..+|... +.+++++++.+-... .++. .+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56777789999999999999999998754 346777766542221 1111 112345566666777
Q ss_pred CCeEEEEcCccccccc
Q 013281 284 SPSIVFIDEIDAVGTK 299 (446)
Q Consensus 284 ~p~IL~IDEid~l~~~ 299 (446)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 270
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=8.2e-06 Score=77.41 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
....-|.|.||+|||||||.+.||..
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445999999999999999999974
No 271
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.06 E-value=7.5e-05 Score=74.56 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=94.3
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh--------
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-------- 263 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-------- 263 (446)
.+.+.+.++..+...+-.- .-..|..|.|||-.|||||.+++.+.+.++.+++.++|-+...
T Consensus 7 ~v~~Re~qi~~L~~Llg~~----------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN----------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhCCC----------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 4578899999999877541 1145778999999999999999999999999999988865432
Q ss_pred --hh-----cCCch----HHH---HHHHHH--Hhhc--CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC
Q 013281 264 --KY-----LGDGP----KLV---RELFRV--ADDL--SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF 325 (446)
Q Consensus 264 --~~-----~g~~~----~~v---~~lf~~--a~~~--~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 325 (446)
+. .|..- ..+ ..+|.. +... ..-.|++|.+|.+- ..+..+...+..+-.-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--------D~~a~ll~~l~~L~el---- 144 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--------DMDAILLQCLFRLYEL---- 144 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--------ccchHHHHHHHHHHHH----
Confidence 11 11111 111 122222 1111 23488999999993 1122233333333222
Q ss_pred CCCCCeEEEEEeCCCCCCChhhcCCCce-eeEEEcCCCCHHHHHHHHHHH
Q 013281 326 DSRGDVKVILATNRIESLDPALLRPGRI-DRKIEFPLPDIKTRRRIFQIH 374 (446)
Q Consensus 326 ~~~~~v~vI~atn~~~~ld~al~r~gRf-~~~i~~~~P~~~er~~Il~~~ 374 (446)
.....+.+|++.-..+.. -+.+-|-+ ...++||.|+.++...|+..-
T Consensus 145 ~~~~~i~iils~~~~e~~--y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 145 LNEPTIVIILSAPSCEKQ--YLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred hCCCceEEEEeccccHHH--hhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 223344455444322211 11111222 247899999999999988653
No 272
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.06 E-value=4.9e-05 Score=76.23 Aligned_cols=158 Identities=22% Similarity=0.317 Sum_probs=90.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--EEEechhhhh-----------hhc----C-------CchHHHHHHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATF--LRVVGSELIQ-----------KYL----G-------DGPKLVRELFR 278 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~--i~v~~s~l~~-----------~~~----g-------~~~~~v~~lf~ 278 (446)
.+|+|++|||.-|||||+|.-.+...+.... -+|+..++.. ++. + +.-..+.+-
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~e-- 189 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADE-- 189 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHH--
Confidence 4699999999999999999999886553211 1222333222 110 1 111111111
Q ss_pred HHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCCChhhcCCCceeeEE
Q 013281 279 VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IESLDPALLRPGRIDRKI 357 (446)
Q Consensus 279 ~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~-~~~ld~al~r~gRf~~~i 357 (446)
.|. .-++|++||+... +-.-.-.|.+|+..+- ..+|++++|+|+ |+.|...= +.+..
T Consensus 190 Ia~--ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknG-----lQR~~ 247 (467)
T KOG2383|consen 190 IAE--EAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNG-----LQREN 247 (467)
T ss_pred Hhh--hceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcc-----hhhhh
Confidence 111 1379999999654 2222334445555442 348999999998 44443222 22233
Q ss_pred EcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCC-C--C-cHHHHHHHHHHHHH
Q 013281 358 EFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKD-E--F-SGADIKAICTEAGL 410 (446)
Q Consensus 358 ~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~-g--~-s~~di~~l~~~A~~ 410 (446)
.+| -..+|+.++.-..+.+.+|+...+...+ + | +..|+..++.+-..
T Consensus 248 F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 248 FIP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred hhh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 343 3567888888888888899983333222 1 2 23478888777654
No 273
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.05 E-value=0.00015 Score=70.42 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=79.5
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEE-----ec--hh
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-----TFLRV-----VG--SE 260 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~-----~~i~v-----~~--s~ 260 (446)
|.|+.-+++.+..++...+.++. -+.|--+-|+|++||||.++++.||+.+-. +|+.. ++ ..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 68888888887777776544431 123344668999999999999999997632 22211 11 11
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHH---hcCCCCCCCeEEEEEe
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ---LDGFDSRGDVKVILAT 337 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~---ld~~~~~~~v~vI~at 337 (446)
-++.|- .+....+-..+..+..++.++||+|.+ .+.+..++--+|+. .+|.+ ..+.++|+-+
T Consensus 158 ~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~-frkaIFIfLS 222 (344)
T KOG2170|consen 158 KIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVD-FRKAIFIFLS 222 (344)
T ss_pred HHHHHH---HHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhcccccccccc-ccceEEEEEc
Confidence 112221 122334455556677789999999999 55666666666653 23322 2356778888
Q ss_pred CCCC
Q 013281 338 NRIE 341 (446)
Q Consensus 338 n~~~ 341 (446)
|.-.
T Consensus 223 N~gg 226 (344)
T KOG2170|consen 223 NAGG 226 (344)
T ss_pred CCcc
Confidence 7643
No 274
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.05 E-value=2.5e-05 Score=74.05 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s 259 (446)
|+....-++|+||||+|||++|..+|.+. +..++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 66667779999999999999999998744 5677777766
No 275
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.03 E-value=6.9e-05 Score=66.48 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
....++++|+||+||||++.-++..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 345699999999999999999998663
No 276
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.02 E-value=3.2e-05 Score=77.13 Aligned_cols=118 Identities=18% Similarity=0.258 Sum_probs=67.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh----------------hcCCchHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK----------------YLGDGPKLVRELFRVAD 281 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~----------------~~g~~~~~v~~lf~~a~ 281 (446)
|+...+.+.+|||||||||+||..++... +..+++++..+-... .....+..+..+...++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56667779999999999999999877543 566777766432110 11122233333333345
Q ss_pred hcCCeEEEEcCcccccccc-cCCCCCC-cHHH-HHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 282 DLSPSIVFIDEIDAVGTKR-YDAHSGG-EREI-QRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~~r-~~~~~~~-~~~~-~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
...+++|+||-+.++.+.. .+...+. .... .+.+.+.|..+.......++.+|++..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 5678999999999987532 1111111 1111 233344444443333455777777653
No 277
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.01 E-value=3e-05 Score=77.19 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=67.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh----------------hcCCchHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK----------------YLGDGPKLVRELFRVAD 281 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~----------------~~g~~~~~v~~lf~~a~ 281 (446)
|+...+.++|+||||||||+||..++.+. +..++++++.+.... .....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56667789999999999999988776543 556677765442220 11122233333333445
Q ss_pred hcCCeEEEEcCcccccccc-cCCCCCC-cHHHH-HHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 282 DLSPSIVFIDEIDAVGTKR-YDAHSGG-EREIQ-RTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~~r-~~~~~~~-~~~~~-~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
...+.+|+||-+.++.+.. .+...+. ....+ +.+.+.|..+.......++.+|++..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5678999999999987532 1111111 11122 22334444444433456777777754
No 278
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.94 E-value=9.7e-05 Score=70.48 Aligned_cols=110 Identities=16% Similarity=0.316 Sum_probs=62.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh----hhh--cC-----------------------C
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI----QKY--LG-----------------------D 268 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~----~~~--~g-----------------------~ 268 (446)
|+.....++|+||||||||+++..++... +...++++..+-. ... .| .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 45566779999999999999976554432 4456666543211 100 00 0
Q ss_pred --chHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 269 --GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 269 --~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
....+..+........|.+++|||+-.+... ..+....+.+.+++..+.. . +..+|++++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~~---~-g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRISS---L-NKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHHh---C-CCEEEEEeccc
Confidence 0223334455555557899999999876421 1122233556666665532 2 34566676643
No 279
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00014 Score=80.52 Aligned_cols=162 Identities=25% Similarity=0.352 Sum_probs=111.1
Q ss_pred cccccCc-HHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEec
Q 013281 190 YADIGGL-DAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFLRVVG 258 (446)
Q Consensus 190 ~~di~Gl-~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~i~v~~ 258 (446)
++-++|. ++.++.+.+.+.. +..++-+|.|.||+|||.++.-+|+.. ...++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 4455666 8888888887765 334689999999999999999999864 235555665
Q ss_pred hhhhh--hhcCCchHHHHHHHHHHhhc-CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 013281 259 SELIQ--KYLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL 335 (446)
Q Consensus 259 s~l~~--~~~g~~~~~v~~lf~~a~~~-~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~ 335 (446)
..+.. ++.|+.+..+..+...+... ..-||||||++.+.....+ .+..+. ..+|..+- .++.+.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~----~nlLkp~L---~rg~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDA----ANLLKPLL---ARGGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHH----HHhhHHHH---hcCCeEEEe
Confidence 54443 56788888999998887743 4569999999999754422 111122 22332221 245599999
Q ss_pred EeCC-----CCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc
Q 013281 336 ATNR-----IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (446)
Q Consensus 336 atn~-----~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~ 377 (446)
||.. .-.-+|++-+ ||+ .+.++.|+......||......
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 8742 2246889988 997 7788999887766666654443
No 280
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.93 E-value=0.00013 Score=74.71 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=48.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSA-TFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD 302 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~-~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~ 302 (446)
...++++.||+|||||+++.+++....+ .-..++.+.|+..... ..+.. -....+|+|||+..+.-.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~-------~~lg~--v~~~DlLI~DEvgylp~~--- 275 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIST-------RQIGL--VGRWDVVAFDEVATLKFA--- 275 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHH-------HHHhh--hccCCEEEEEcCCCCcCC---
Confidence 4568999999999999999998876210 0023344444432211 11111 123579999999886422
Q ss_pred CCCCCcHHHHHHHHHHHH
Q 013281 303 AHSGGEREIQRTMLELLN 320 (446)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~ 320 (446)
...+....|...+.
T Consensus 276 ----~~~~~v~imK~yMe 289 (449)
T TIGR02688 276 ----KPKELIGILKNYME 289 (449)
T ss_pred ----chHHHHHHHHHHHH
Confidence 24455566655554
No 281
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.92 E-value=9.4e-05 Score=76.05 Aligned_cols=227 Identities=18% Similarity=0.205 Sum_probs=129.5
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchH
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPK 271 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~ 271 (446)
+|.|.+++++.|.-.+...... ..-..+.++..-+|+|.|.||+.||-|.+.|.+-..+..+...-.. ..+|-++.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~-~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDK-SPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCC-CCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccchh
Confidence 5899999999877665442211 0001222333446999999999999999999987655544331110 11222222
Q ss_pred HHHH-----------HHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHH----h--cCCCC--CCCeE
Q 013281 272 LVRE-----------LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ----L--DGFDS--RGDVK 332 (446)
Q Consensus 272 ~v~~-----------lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~----l--d~~~~--~~~v~ 332 (446)
.+++ .+-.| ..+|-+|||+|.+... ++ ..+-+.+++ + .|+.. +..+.
T Consensus 419 VmkDpvTgEM~LEGGALVLA---D~GICCIDEfDKM~e~--------DR---tAIHEVMEQQTISIaKAGI~TtLNAR~s 484 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLA---DGGICCIDEFDKMDES--------DR---TAIHEVMEQQTISIAKAGINTTLNARTS 484 (721)
T ss_pred hhcCCCCCeeEeccceEEEc---cCceEeehhhhhhhhh--------hh---HHHHHHHHhhhhhhhhhccccchhhhHH
Confidence 2111 01111 2379999999999421 22 122222221 1 12211 23567
Q ss_pred EEEEeCCCC-------------CCChhhcCCCceeeEEEc-CCCCHHHHHHHHHHHHc--cCCCCC-----ccCHHHH--
Q 013281 333 VILATNRIE-------------SLDPALLRPGRIDRKIEF-PLPDIKTRRRIFQIHTS--RMTLAD-----DVNLEEF-- 389 (446)
Q Consensus 333 vI~atn~~~-------------~ld~al~r~gRf~~~i~~-~~P~~~er~~Il~~~~~--~~~~~~-----~~~l~~l-- 389 (446)
|++|+|... .|++||++ |||..+-+ ..|+.+.-..+.++.+- ...-.+ .++++.+
T Consensus 485 ILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~ 562 (721)
T KOG0482|consen 485 ILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRR 562 (721)
T ss_pred hhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHH
Confidence 888887632 58899999 99965444 45766555554443221 111111 1221100
Q ss_pred ----HHh--------------------------C---CCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 013281 390 ----VMT--------------------------K---DEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 390 ----a~~--------------------------t---~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~ 436 (446)
++. . .-.|++-|-.+++.+..+|..+-...|..+|+.+|++-+-..|
T Consensus 563 yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK 642 (721)
T KOG0482|consen 563 YISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSK 642 (721)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhh
Confidence 000 0 0235788888888888888888889999999999999877666
Q ss_pred cc
Q 013281 437 KE 438 (446)
Q Consensus 437 ~~ 438 (446)
..
T Consensus 643 ~s 644 (721)
T KOG0482|consen 643 DS 644 (721)
T ss_pred cc
Confidence 54
No 282
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.92 E-value=5.7e-05 Score=71.15 Aligned_cols=117 Identities=23% Similarity=0.260 Sum_probs=63.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh----hhcC----------------Cc---hHHHH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----KYLG----------------DG---PKLVR 274 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~----~~~g----------------~~---~~~v~ 274 (446)
|+....-++|+|+||||||+++..+|.+. +.++++++...... ...+ .. ...+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 66777779999999999999999998765 45666665532111 0000 00 11122
Q ss_pred HHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 275 ~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
.+..... ..+++|+||-+..+........ .........+..++..+..+....++.||++...
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 2332222 2478999999998853211111 1112223334444433333333457778887654
No 283
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.91 E-value=0.00075 Score=67.31 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=50.4
Q ss_pred CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---CCC------------hhhc
Q 013281 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE---SLD------------PALL 348 (446)
Q Consensus 284 ~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~---~ld------------~al~ 348 (446)
.+-||||||+|++ +.+....+++.++.+- ...++++|.+.+... .+. ...+
T Consensus 172 ~~iViiIDdLDR~-----------~~~~i~~~l~~ik~~~---~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 172 KRIVIIIDDLDRC-----------SPEEIVELLEAIKLLL---DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred ceEEEEEcchhcC-----------CcHHHHHHHHHHHHhc---CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 3569999999999 3333444555555443 347899999986421 111 1112
Q ss_pred CCCceeeEEEcCCCCHHHHHHHHHHHHcc
Q 013281 349 RPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (446)
Q Consensus 349 r~gRf~~~i~~~~P~~~er~~Il~~~~~~ 377 (446)
. --|+..+.+|.|+..+...++...+..
T Consensus 238 e-Kiiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 238 E-KIIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred H-hhcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 146778999999998888888776543
No 284
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.90 E-value=6.3e-05 Score=71.07 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=55.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh--hhhh----h----cCCchHHHHHHHHHHh--hcCCeEEEEcC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE--LIQK----Y----LGDGPKLVRELFRVAD--DLSPSIVFIDE 292 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~--l~~~----~----~g~~~~~v~~lf~~a~--~~~p~IL~IDE 292 (446)
|..+||||+||+|||++|+.++.. ..++..+++. +... . .......+.+.+..+. .+.+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 566999999999999999998632 2233333211 0000 0 0111122333333332 23467999999
Q ss_pred cccccc------cccC-C---CCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 013281 293 IDAVGT------KRYD-A---HSGGEREIQRTMLELLNQLDGFDSRGDVKVIL 335 (446)
Q Consensus 293 id~l~~------~r~~-~---~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~ 335 (446)
|+.+.. .+.. + ...+-......++.+|..+... ..+|++++
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~--g~nII~tA 140 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKES--NKNIYATA 140 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 998754 1111 1 1122334556667777666542 23444444
No 285
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.90 E-value=5.6e-05 Score=79.30 Aligned_cols=188 Identities=18% Similarity=0.261 Sum_probs=105.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh-------------hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcC
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE-------------LIQKYLGDGPKLVRELFRVADDLSPSIVFIDE 292 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~-------------l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDE 292 (446)
-+|||+|.|||||+-+.+.+++-..+.++...-.. +...|.-+.- .+-.| ..+|.+|||
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaG-----ALVLA---DkGvClIDE 554 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAG-----ALVLA---DKGVCLIDE 554 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccC-----eEEEc---cCceEEeeh
Confidence 36999999999999999999997766555432110 0011110000 01111 237899999
Q ss_pred cccccccccCCCCCCcHHHHHHHHH---------HHHHhcCCCCCCCeEEEEEeCCCC-------------CCChhhcCC
Q 013281 293 IDAVGTKRYDAHSGGEREIQRTMLE---------LLNQLDGFDSRGDVKVILATNRIE-------------SLDPALLRP 350 (446)
Q Consensus 293 id~l~~~r~~~~~~~~~~~~~~l~~---------lL~~ld~~~~~~~v~vI~atn~~~-------------~ld~al~r~ 350 (446)
+|.+-... .-.+..++-+ +...| ...+.||+|+|... .+...+++
T Consensus 555 FDKMndqD-------RtSIHEAMEQQSISISKAGIVtsL-----qArctvIAAanPigGRY~~s~tFaqNV~ltePIlS- 621 (854)
T KOG0477|consen 555 FDKMNDQD-------RTSIHEAMEQQSISISKAGIVTSL-----QARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS- 621 (854)
T ss_pred hhhhcccc-------cchHHHHHHhcchhhhhhhHHHHH-----HhhhhhheecCCCCCccCCccchhhccccccchhh-
Confidence 99994221 1111111111 11111 24577999998731 34456777
Q ss_pred CceeeEEEcCC---CCHHHHHH--HHHHHHccCCCC--------------------------------------CccCHH
Q 013281 351 GRIDRKIEFPL---PDIKTRRR--IFQIHTSRMTLA--------------------------------------DDVNLE 387 (446)
Q Consensus 351 gRf~~~i~~~~---P~~~er~~--Il~~~~~~~~~~--------------------------------------~~~~l~ 387 (446)
|||..+.+.. |-.+++.. ++..|.+..+-. ...|.+
T Consensus 622 -RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~ 700 (854)
T KOG0477|consen 622 -RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMD 700 (854)
T ss_pred -hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHH
Confidence 9997666653 44444443 455555432221 011112
Q ss_pred HHHHh---------CCC---CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhh
Q 013281 388 EFVMT---------KDE---FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 388 ~la~~---------t~g---~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~ 435 (446)
.++.. ..| .+.+-|..+++-+...|...-+..|+.+|+..|+.-++.+
T Consensus 701 K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 701 KISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 22211 011 2457788888877777777778889999999998876653
No 286
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.88 E-value=0.00072 Score=69.76 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=70.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG 306 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~ 306 (446)
.++|+||.+|||||+++.+.......+++++..++......- ....+ .+..+.......||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~-~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLR-AYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHH-HHHHhhccCCceEEEecccCc----------
Confidence 799999999999999999888876657777766654433211 11111 122222113369999999988
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHH
Q 013281 307 GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (446)
Q Consensus 307 ~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~ 369 (446)
++....+..+.... . .++.+.+++........+-.-+||. ..+.+.+.+..+...
T Consensus 107 --~~W~~~lk~l~d~~---~--~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRG---N--LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHccc---c--ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 23445555554321 0 1333333332221112222226896 578888888888865
No 287
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.88 E-value=8.2e-05 Score=85.00 Aligned_cols=137 Identities=25% Similarity=0.293 Sum_probs=92.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh------hhh-cCC--chHHH-HHHHHHHhhcCCeEEEEcCcc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI------QKY-LGD--GPKLV-RELFRVADDLSPSIVFIDEID 294 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~------~~~-~g~--~~~~v-~~lf~~a~~~~p~IL~IDEid 294 (446)
.+++||-|.||+|||+|..|+|+.+|..+++++.++-. +.+ .++ ++-.. ..-|-.|.. ....|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhh
Confidence 56799999999999999999999999999999987632 222 111 11111 223444444 33689999996
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHH--------hc-CCCCCCCeEEEEEeCCCC------CCChhhcCCCceeeEEEc
Q 013281 295 AVGTKRYDAHSGGEREIQRTMLELLNQ--------LD-GFDSRGDVKVILATNRIE------SLDPALLRPGRIDRKIEF 359 (446)
Q Consensus 295 ~l~~~r~~~~~~~~~~~~~~l~~lL~~--------ld-~~~~~~~v~vI~atn~~~------~ld~al~r~gRf~~~i~~ 359 (446)
.. +..+..-|+..|.. +| .|....+.+|++|-|..+ .|+..++. ||. ++.+
T Consensus 1622 La-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~~ 1687 (4600)
T COG5271 1622 LA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVKM 1687 (4600)
T ss_pred hh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEEe
Confidence 54 33344444555542 11 133346788888888754 58888988 996 7888
Q ss_pred CCCCHHHHHHHHHHHHc
Q 013281 360 PLPDIKTRRRIFQIHTS 376 (446)
Q Consensus 360 ~~P~~~er~~Il~~~~~ 376 (446)
...+.++...|......
T Consensus 1688 d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1688 DGLTTDDITHIANKMYP 1704 (4600)
T ss_pred cccccchHHHHHHhhCC
Confidence 88888888877765544
No 288
>PHA00729 NTP-binding motif containing protein
Probab=97.87 E-value=3.7e-05 Score=72.60 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.+++|+|+||||||+||.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 289
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.86 E-value=0.00017 Score=74.31 Aligned_cols=230 Identities=21% Similarity=0.253 Sum_probs=120.4
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe-chhhhhhhcCCch
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSELIQKYLGDGP 270 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~-~s~l~~~~~g~~~ 270 (446)
.|.|.+++++.|-=.+-.- ...-+-..+-.+..-+|||.|.|||.|+-|.+.+-.-....++.-. +|.- .|-++
T Consensus 332 SIfG~~DiKkAiaClLFgG-srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSA----AGLTA 406 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGG-SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSA----AGLTA 406 (729)
T ss_pred hhcCchhHHHHHHHHhhcC-ccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCccc----cccee
Confidence 4788888877764433211 0000111111222336999999999999999998775544333210 1100 00000
Q ss_pred HHHHHH----HHH---H-hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHh--cCCC--CCCCeEEEEEeC
Q 013281 271 KLVREL----FRV---A-DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL--DGFD--SRGDVKVILATN 338 (446)
Q Consensus 271 ~~v~~l----f~~---a-~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~l--d~~~--~~~~v~vI~atn 338 (446)
..+++- |-. | -....+|++|||+|.+- .++ .-.+.+.+-+---.+ .|+. -+....|++|+|
T Consensus 407 SV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr---e~D----RVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAAN 479 (729)
T KOG0481|consen 407 SVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR---EDD----RVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAAN 479 (729)
T ss_pred eEEecCCcceEEEecceEEEecCCEEEeehhhccC---chh----hhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcC
Confidence 000000 000 0 01134799999999992 111 112222222111111 1221 134566888888
Q ss_pred CCC-------------CCChhhcCCCceeeEEEcCCCCHHHH-----HHHHHHHHccCCCCC--------ccCHHHH---
Q 013281 339 RIE-------------SLDPALLRPGRIDRKIEFPLPDIKTR-----RRIFQIHTSRMTLAD--------DVNLEEF--- 389 (446)
Q Consensus 339 ~~~-------------~ld~al~r~gRf~~~i~~~~P~~~er-----~~Il~~~~~~~~~~~--------~~~l~~l--- 389 (446)
.+. ++-+.+++ |||..+-+..-..+++ ..++..|....+... .+.++.+
T Consensus 480 pvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~Kry 557 (729)
T KOG0481|consen 480 PVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRY 557 (729)
T ss_pred CccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHH
Confidence 631 23477888 9998777765433333 334555554222111 1112111
Q ss_pred --------------------HHh----------CC---------CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013281 390 --------------------VMT----------KD---------EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 390 --------------------a~~----------t~---------g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
... .+ -.+.++|.++++-+..+|-.+-....|.+|+++|++
T Consensus 558 I~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~R 637 (729)
T KOG0481|consen 558 IQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALR 637 (729)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHH
Confidence 000 00 145689999999999999888899999999999998
Q ss_pred HHHhh
Q 013281 431 KVMFK 435 (446)
Q Consensus 431 ~v~~~ 435 (446)
-...+
T Consensus 638 LF~vS 642 (729)
T KOG0481|consen 638 LFQVS 642 (729)
T ss_pred HHhHh
Confidence 65543
No 290
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.84 E-value=0.0001 Score=70.37 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEech
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVVGS 259 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~---~~~~~i~v~~s 259 (446)
|+..+..++++|+||||||+++.+++.. .+..+++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 6777888999999999999999999754 25566666553
No 291
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.80 E-value=0.00017 Score=70.97 Aligned_cols=164 Identities=19% Similarity=0.286 Sum_probs=97.9
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHH---HhCCcEEEEechhhhh--
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN---STSATFLRVVGSELIQ-- 263 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~---~~~~~~i~v~~s~l~~-- 263 (446)
....+.|....-+.+.+.+..-..+ .....|++.||.|+|||++...... +.+-+|+.+.......
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~d 92 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTD 92 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhh
Confidence 3445678888888888877764333 2356799999999999998775543 4566666554332211
Q ss_pred -------------------hhcCCchHHHHHHHHHHhhc-----CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHH
Q 013281 264 -------------------KYLGDGPKLVRELFRVADDL-----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (446)
Q Consensus 264 -------------------~~~g~~~~~v~~lf~~a~~~-----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL 319 (446)
+..|.....+..++...+.. .+-|.++||+|-.++. .-|-.+..++
T Consensus 93 k~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlf 162 (408)
T KOG2228|consen 93 KIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHH
Confidence 12233333333333332221 1224446789988632 2344455555
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCC---CChhhcCCCceeeE-EEcCC-CCHHHHHHHHHHHH
Q 013281 320 NQLDGFDSRGDVKVILATNRIES---LDPALLRPGRIDRK-IEFPL-PDIKTRRRIFQIHT 375 (446)
Q Consensus 320 ~~ld~~~~~~~v~vI~atn~~~~---ld~al~r~gRf~~~-i~~~~-P~~~er~~Il~~~~ 375 (446)
+... ..+.++.||+.|.+.+. |...+.+ ||... |++++ ....+...+++..+
T Consensus 163 Disq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 4333 23568999999877664 3455555 88754 55544 46778888887766
No 292
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=2.1e-05 Score=66.67 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
|+|.|+|||||||+|+.+|+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999987776553
No 293
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.79 E-value=0.00021 Score=74.94 Aligned_cols=78 Identities=28% Similarity=0.399 Sum_probs=54.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh------hcCCc--------hHHHHHHHHHHhhc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK------YLGDG--------PKLVRELFRVADDL 283 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~------~~g~~--------~~~v~~lf~~a~~~ 283 (446)
|+.+..-++|+|+||+|||+|+..++... +.+++++++.+-... .++.. +..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67777789999999999999999997754 346777776543221 11111 11234555666667
Q ss_pred CCeEEEEcCcccccc
Q 013281 284 SPSIVFIDEIDAVGT 298 (446)
Q Consensus 284 ~p~IL~IDEid~l~~ 298 (446)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998853
No 294
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.77 E-value=0.00018 Score=67.08 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=57.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH-----hCCcE-------------EEEechhhhhhhcCC---chHHHHHHHHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANS-----TSATF-------------LRVVGSELIQKYLGD---GPKLVRELFRVA 280 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~-----~~~~~-------------i~v~~s~l~~~~~g~---~~~~v~~lf~~a 280 (446)
+...+.++|+||+|+||||+++.++.. .+.++ ..+...+-+..-.+. ....+..+++.+
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~ 101 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKA 101 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhc
Confidence 344567899999999999999999853 33321 111111100000000 113345566655
Q ss_pred hhcCCeEEEEcCcccccccccCCCCCCcHHHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 281 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQR-TMLELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~-~l~~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
....|.+|++||.-.-. +..... .+..++..+. ..+..+|++|+..+.
T Consensus 102 ~~~~p~llllDEp~~gl----------D~~~~~~l~~~ll~~l~----~~~~tiiivTH~~~~ 150 (199)
T cd03283 102 KKGEPVLFLLDEIFKGT----------NSRERQAASAAVLKFLK----NKNTIGIISTHDLEL 150 (199)
T ss_pred cCCCCeEEEEecccCCC----------CHHHHHHHHHHHHHHHH----HCCCEEEEEcCcHHH
Confidence 54478999999974321 222222 2233454442 125678888876553
No 295
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.77 E-value=2.9e-05 Score=70.49 Aligned_cols=59 Identities=20% Similarity=0.438 Sum_probs=39.5
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEechhh
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---FLRVVGSEL 261 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~---~i~v~~s~l 261 (446)
++|.+++++++...+.. . ....++.++|+|++|+|||++++++...+... ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~~-~---------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A---------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T---------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H---------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57999999999998862 1 12346789999999999999999988766443 777766654
No 296
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.77 E-value=0.00015 Score=73.66 Aligned_cols=111 Identities=14% Similarity=0.259 Sum_probs=60.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC-----c-EEEEechh------hh---------hhhcCCchHHHH---HHHHHHhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSA-----T-FLRVVGSE------LI---------QKYLGDGPKLVR---ELFRVADD 282 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~-----~-~i~v~~s~------l~---------~~~~g~~~~~v~---~lf~~a~~ 282 (446)
..+|+||||+|||+|++.|++.... . |+.+.... +. +.+-......++ .+++.|..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999987643 2 22222211 11 111111122222 23333332
Q ss_pred ----cCCeEEEEcCcccccccccC-------CC-CCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 283 ----LSPSIVFIDEIDAVGTKRYD-------AH-SGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 283 ----~~p~IL~IDEid~l~~~r~~-------~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
....+||||||+++...... .. .+-+......+-.++.........+.+.+|+|.
T Consensus 251 ~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 251 LVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 24569999999998644321 11 222333444445566554444445677777764
No 297
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.76 E-value=0.00011 Score=71.75 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=43.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC----------cEEEEe-chhhhhhh-------cCC------chHHHHHHHHHHh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSA----------TFLRVV-GSELIQKY-------LGD------GPKLVRELFRVAD 281 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~----------~~i~v~-~s~l~~~~-------~g~------~~~~v~~lf~~a~ 281 (446)
.+++|.||||+||||+.++++..... .+..++ ..++...+ ++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987643 221111 12332211 111 1111335666777
Q ss_pred hcCCeEEEEcCc
Q 013281 282 DLSPSIVFIDEI 293 (446)
Q Consensus 282 ~~~p~IL~IDEi 293 (446)
.+.|.+|++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 298
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.76 E-value=3.7e-05 Score=71.25 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=58.6
Q ss_pred EEEEcCCCCcHHHHHHHH-HHH---hCCcEEEEechhhhhhhc----CCchH-------------HHHHHHHHHhhcCCe
Q 013281 228 VILYGEPGTGKTLLAKAV-ANS---TSATFLRVVGSELIQKYL----GDGPK-------------LVRELFRVADDLSPS 286 (446)
Q Consensus 228 vLL~GppGtGKT~Larai-a~~---~~~~~i~v~~s~l~~~~~----g~~~~-------------~v~~lf~~a~~~~p~ 286 (446)
.+++|.||+|||+.|-.. ... .+++++. +...|.-..+ +.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 678999999999988655 332 2444443 4332221110 00000 001111111111458
Q ss_pred EEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCC
Q 013281 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 287 IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P 362 (446)
+|+|||++.+++.+.... ......+ +++.+.. ..+.-||++|..+..+|+.++. .++..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~----~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG----KKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc----ccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 999999999987763311 1112233 5554433 2467899999999999999986 77777666543
No 299
>PRK04296 thymidine kinase; Provisional
Probab=97.75 E-value=0.00026 Score=65.48 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=40.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech----hhh---hhhcCCc-----hHHHHHHHHHH--hhcCCeEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANST---SATFLRVVGS----ELI---QKYLGDG-----PKLVRELFRVA--DDLSPSIVF 289 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s----~l~---~~~~g~~-----~~~v~~lf~~a--~~~~p~IL~ 289 (446)
-++++||||+|||+++..++..+ +..++.+..+ ... ....|.. ......++..+ ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888765 4444444321 100 0111110 01122333333 233567999
Q ss_pred EcCcccc
Q 013281 290 IDEIDAV 296 (446)
Q Consensus 290 IDEid~l 296 (446)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999776
No 300
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.75 E-value=2.1e-05 Score=71.28 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
+++|+|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 301
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.72 E-value=3e-05 Score=81.92 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=46.2
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEec
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-TFLRVVG 258 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~-~~i~v~~ 258 (446)
-|+|+.|+++++++|.+.+...... ++ .....++|.||||+|||+||++||+.+.. +++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~g------l~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQG------LE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHh------cC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 5778999999999999988432111 11 23346889999999999999999997643 5555544
No 302
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.72 E-value=0.00016 Score=68.29 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=64.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---C------CcEEEEechhhhhh--------hcC---------------C
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---S------ATFLRVVGSELIQK--------YLG---------------D 268 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~------~~~i~v~~s~l~~~--------~~g---------------~ 268 (446)
|+....-+.|+||||+|||+++..+|... + ..+++++...-... ..+ .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 66777789999999999999999998653 2 45566665431100 000 0
Q ss_pred chHHHHHHHHHH----hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 269 GPKLVRELFRVA----DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 269 ~~~~v~~lf~~a----~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
....+...+... ....+.+|+||-+..+........ +...+..+.+.+++..+..+....++.||++.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR-GMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC-chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111112222222 245678999999998864321111 00122234444555544444344567777665
No 303
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.72 E-value=0.00023 Score=64.02 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=65.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhh--------hhhcCC-----chHHHHHHHHHHhhcCC
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELI--------QKYLGD-----GPKLVRELFRVADDLSP 285 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~--------~~~~g~-----~~~~v~~lf~~a~~~~p 285 (446)
.+.+...+.|.||+|+|||+|.+.++..... --+.+++..+. ...++. .....+-.+..|-...|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999986532 12233322111 111111 11123344555666789
Q ss_pred eEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 286 ~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
.+|++||-..-. +......+.+++.++.. .+..+|++|+..+
T Consensus 102 ~illlDEP~~~L----------D~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 143 (163)
T cd03216 102 RLLILDEPTAAL----------TPAEVERLFKVIRRLRA----QGVAVIFISHRLD 143 (163)
T ss_pred CEEEEECCCcCC----------CHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 999999975432 56667778888876631 2456777777654
No 304
>PRK09354 recA recombinase A; Provisional
Probab=97.71 E-value=0.00015 Score=72.86 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=50.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEechhhhhh----------------hcCCchHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVVGSELIQK----------------YLGDGPKLVRELFRVAD 281 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~---~~~~~i~v~~s~l~~~----------------~~g~~~~~v~~lf~~a~ 281 (446)
|+...+.++|+||||||||+||..++.. .+...++++..+-... .....+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 5666777999999999999999987653 3556677665442210 01112222222223344
Q ss_pred hcCCeEEEEcCcccccc
Q 013281 282 DLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~ 298 (446)
...+.+|+||=+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 55788999999999875
No 305
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=9.3e-05 Score=67.04 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.|+++||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887764
No 306
>PHA02624 large T antigen; Provisional
Probab=97.70 E-value=0.00025 Score=75.43 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=72.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r 300 (446)
|++..+.++|+||||||||+++.+|++.++...+.++++.-... |...-.....+++||++-.-+-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 44455579999999999999999999999776777775542111 222211122588999986443211
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCCC-------CCC-----eEEEEEeCCCCCCChhhcCCCceeeEEEcCC
Q 013281 301 YDAHSGGEREIQRTMLELLNQLDGFDS-------RGD-----VKVILATNRIESLDPALLRPGRIDRKIEFPL 361 (446)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~ld~~~~-------~~~-----v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 361 (446)
.+-.+|.- ..-+..|=+.+||... ... -..|.|||. ..++..+.- ||...+.|..
T Consensus 495 ~~Lp~G~~---~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQG---MNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcccc---cchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 11111111 1122344455666411 011 235778886 457777776 9988888864
No 307
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.70 E-value=0.00053 Score=65.63 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~---~~~~~i~v~~ 258 (446)
|+.+...+|++||||||||++|..++.+ .+-+.++++.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 7778888999999999999999876653 2445555544
No 308
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.68 E-value=0.00015 Score=63.12 Aligned_cols=36 Identities=33% Similarity=0.580 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
|+++|||||||||+|+.++..++ +..++...+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 78999999999999999999988 5556666655443
No 309
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.67 E-value=0.00028 Score=62.24 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=61.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhhhhh---cCCchHHHHHHHHHHhhcCCeEEEEcCccc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQKY---LGDGPKLVRELFRVADDLSPSIVFIDEIDA 295 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~~~~---~g~~~~~v~~lf~~a~~~~p~IL~IDEid~ 295 (446)
.+.+...+.|.||+|+|||||+++++..... --+.+++.. .-.| +..+. .-+-.+..+-...|.++++||-..
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~-~i~~~~~lS~G~-~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-KIGYFEQLSGGE-KMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE-EEEEEccCCHHH-HHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3456677999999999999999999986532 111111110 0001 11111 222334555556889999999754
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 296 VGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 296 l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
-. +......+.+++.++ +..+|++|+..+
T Consensus 100 ~L----------D~~~~~~l~~~l~~~-------~~til~~th~~~ 128 (144)
T cd03221 100 HL----------DLESIEALEEALKEY-------PGTVILVSHDRY 128 (144)
T ss_pred CC----------CHHHHHHHHHHHHHc-------CCEEEEEECCHH
Confidence 32 555566777777654 135777887654
No 310
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.67 E-value=0.00014 Score=69.19 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=63.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechhhhh-h---------------h------c--C
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSELIQ-K---------------Y------L--G 267 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~l~~-~---------------~------~--g 267 (446)
|+....-+.|+||||||||+++..++... +...++++...-.. . . . .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56777779999999999999999997542 24666776543110 0 0 0 0
Q ss_pred Cc---hHHHHHHHHHHhhc-CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 268 DG---PKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 268 ~~---~~~v~~lf~~a~~~-~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
.. ...+..+-...... .+.+|+||-+..+........ +...+..+.+.+++..+..+....++.||++.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 00 11112222333344 789999999998753211111 00122334445555544433334566677664
No 311
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.65 E-value=0.00012 Score=78.11 Aligned_cols=53 Identities=26% Similarity=0.288 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 274 ~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
+-.|....-++|.++||||+-.-. +++.+..+.+++..- -.++.||..+.++.
T Consensus 523 RlafARilL~kP~~v~LDEATsAL----------De~~e~~l~q~l~~~-----lp~~tvISV~Hr~t 575 (604)
T COG4178 523 RLAFARLLLHKPKWVFLDEATSAL----------DEETEDRLYQLLKEE-----LPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHcCCCEEEEecchhcc----------ChHHHHHHHHHHHhh-----CCCCEEEEeccchh
Confidence 345666677899999999986543 667788888888741 25677888887653
No 312
>PHA02774 E1; Provisional
Probab=97.65 E-value=0.00051 Score=72.83 Aligned_cols=128 Identities=20% Similarity=0.315 Sum_probs=71.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-EechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR-VVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~-v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~ 303 (446)
..+++||||||||||++|.+|++.++..++. ++... .+. +..+. .-.+++|||+-.-+
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw----------Lqpl~--d~ki~vlDD~t~~~------ 492 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW----------LQPLA--DAKIALLDDATHPC------ 492 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc----------cchhc--cCCEEEEecCcchH------
Confidence 3579999999999999999999998654433 44311 110 11221 22599999982111
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCCChh---hcCCCceeeEEEcCCC-------
Q 013281 304 HSGGEREIQRTMLELLNQLDGFD-----------SRGDVKVILATNRIESLDPA---LLRPGRIDRKIEFPLP------- 362 (446)
Q Consensus 304 ~~~~~~~~~~~l~~lL~~ld~~~-----------~~~~v~vI~atn~~~~ld~a---l~r~gRf~~~i~~~~P------- 362 (446)
...+...|.. .++|-. ......+|.|||..-.-++. |.+ |+. .++|+.|
T Consensus 493 ----w~y~d~~Lrn---~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~s--Ri~-~f~F~n~~P~d~~G 562 (613)
T PHA02774 493 ----WDYIDTYLRN---ALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHS--RIT-VFEFPNPFPLDENG 562 (613)
T ss_pred ----HHHHHHHHHH---HcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhh--hEE-EEECCCCCCcCCCC
Confidence 1222223222 334421 00124678899853333332 333 663 5666543
Q ss_pred ------CHHHHHHHHHHHHccCCCCCc
Q 013281 363 ------DIKTRRRIFQIHTSRMTLADD 383 (446)
Q Consensus 363 ------~~~er~~Il~~~~~~~~~~~~ 383 (446)
+...-+.+|+.+-..+.+.+.
T Consensus 563 ~P~f~ltd~~WKsFF~rlw~~LdL~d~ 589 (613)
T PHA02774 563 NPVFELTDANWKSFFERLWSQLDLSDQ 589 (613)
T ss_pred CEeeeeCchhHHHHHHHHHHHcCCCCc
Confidence 334556677777777766533
No 313
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.64 E-value=0.00069 Score=65.39 Aligned_cols=114 Identities=14% Similarity=0.302 Sum_probs=61.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc------EEEEech------hhhhhh--------cCCchHH----HHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSAT------FLRVVGS------ELIQKY--------LGDGPKL----VRELFRV 279 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~------~i~v~~s------~l~~~~--------~g~~~~~----v~~lf~~ 279 (446)
....++|.||+|+|||+|++.+++..... |+.+... ++.... .+..+.. ...+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 35569999999999999999999977542 3332221 122111 1222211 1222333
Q ss_pred Hh----hcCCeEEEEcCccccccccc-------CCCCCC-cHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 280 AD----DLSPSIVFIDEIDAVGTKRY-------DAHSGG-EREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 280 a~----~~~p~IL~IDEid~l~~~r~-------~~~~~~-~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
|. .....+|||||+.++..... ...+++ .......+-+++..-..+...+.+.++.|.
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 32 22456999999998853321 122322 344444455666543333345667666443
No 314
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.64 E-value=0.00065 Score=63.26 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
+.-++++|+||+|||++|+.+|..++..+ +..+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~ 37 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDY 37 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHH
Confidence 44689999999999999999999988754 344443
No 315
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.64 E-value=0.00032 Score=65.22 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=49.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh----hhcCCchHHHHHHHHHHh---------hcCCeEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----KYLGDGPKLVRELFRVAD---------DLSPSIV 288 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~----~~~g~~~~~v~~lf~~a~---------~~~p~IL 288 (446)
.+.++|.||||||||++++.+...+ +..++.+..+.-.. ...+.....+..++.... .....+|
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 3458889999999999999987654 44555554432111 111111122222221111 1233699
Q ss_pred EEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 289 FIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 289 ~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
+|||+..+. . ..+..++..... .+..+|+....
T Consensus 98 iVDEasmv~-----------~---~~~~~ll~~~~~----~~~klilvGD~ 130 (196)
T PF13604_consen 98 IVDEASMVD-----------S---RQLARLLRLAKK----SGAKLILVGDP 130 (196)
T ss_dssp EESSGGG-B-----------H---HHHHHHHHHS-T-----T-EEEEEE-T
T ss_pred EEecccccC-----------H---HHHHHHHHHHHh----cCCEEEEECCc
Confidence 999998882 2 345555554432 34566666654
No 316
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.62 E-value=0.0003 Score=64.26 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=61.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------cEEEEechhhhhh----------hcCCch--HHHHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA-------------TFLRVVGSELIQK----------YLGDGP--KLVREL 276 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~-------------~~i~v~~s~l~~~----------~~g~~~--~~v~~l 276 (446)
+.+..-+.|.||+|+|||||.+++....+. ++.++.-.+++.. ...... ...+-.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 455666999999999999999999743221 1112111111111 111111 122334
Q ss_pred HHHHhhcC--CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 277 FRVADDLS--PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 277 f~~a~~~~--p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
+..+.... |.++++||-..-. +......+.+++..+. ..+..||++|+..+
T Consensus 98 laral~~~~~p~llLlDEPt~~L----------D~~~~~~l~~~l~~~~----~~g~tvIivSH~~~ 150 (176)
T cd03238 98 LASELFSEPPGTLFILDEPSTGL----------HQQDINQLLEVIKGLI----DLGNTVILIEHNLD 150 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH----hCCCEEEEEeCCHH
Confidence 45555567 8999999985432 5556677777776652 12456788887654
No 317
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.62 E-value=0.00032 Score=65.31 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=42.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEec-hhhhh---------hhcCCchHHHHHHHHHHhhcCCeEEEEcC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSA----TFLRVVG-SELIQ---------KYLGDGPKLVRELFRVADDLSPSIVFIDE 292 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~----~~i~v~~-s~l~~---------~~~g~~~~~v~~lf~~a~~~~p~IL~IDE 292 (446)
-++|.||+|+||||++++++..... .++.+.. .++.. ..++.........+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3889999999999999999887742 2222211 11111 11222223344556666667899999999
Q ss_pred c
Q 013281 293 I 293 (446)
Q Consensus 293 i 293 (446)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 318
>PRK07261 topology modulation protein; Provisional
Probab=97.62 E-value=0.00013 Score=66.36 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.++|+|+||+||||||+.++..++.+++..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 38999999999999999999999888776654
No 319
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.61 E-value=0.00035 Score=63.92 Aligned_cols=106 Identities=21% Similarity=0.179 Sum_probs=62.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhh---hhhh-cCCchHHHHHHHHHHhhcCCeEEEEcCccc
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL---IQKY-LGDGPKLVRELFRVADDLSPSIVFIDEIDA 295 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l---~~~~-~g~~~~~v~~lf~~a~~~~p~IL~IDEid~ 295 (446)
+.+...+.|.||+|+|||||++.++..... --+.+++..+ .+.. +..+. ..+-.+..+-...|.++++||-..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHHHHHHHHHhcCCCEEEEECCcc
Confidence 345667999999999999999999986432 1122222110 1110 11111 223344455556799999999754
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 296 VGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 296 l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
-. +......+.+++.++.. .++..+|++|+..+
T Consensus 101 ~L----------D~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~ 133 (177)
T cd03222 101 YL----------DIEQRLNAARAIRRLSE---EGKKTALVVEHDLA 133 (177)
T ss_pred cC----------CHHHHHHHHHHHHHHHH---cCCCEEEEEECCHH
Confidence 32 55566677777765521 23356777777644
No 320
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.60 E-value=7.2e-05 Score=67.33 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
++..++|+|+||||||++|+++|+.++.+|+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45689999999999999999999999988874
No 321
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.59 E-value=0.00041 Score=65.67 Aligned_cols=108 Identities=27% Similarity=0.373 Sum_probs=63.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEechhhhh--------------hh-----------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELIQ--------------KY----------------- 265 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~s~l~~--------------~~----------------- 265 (446)
|+..+..+|+.||||||||+++..++... +.++++++..+-.. .+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 67778889999999999999999776432 67777766532111 00
Q ss_pred --cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 266 --LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 266 --~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
.......+..+.+......+.+|+||-+..+. .. .........+..+...+. ..++.+|+++.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~-----~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY-----DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS-----SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc-----CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 01223334555555666678999999999882 11 112223344444554442 23555666655
No 322
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.58 E-value=0.00036 Score=62.51 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...++|+||+|||||+|.+++|...
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34556679999999999999999999843
No 323
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.0006 Score=64.03 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=46.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--------cEEEEec-hhhhhhhcCC-------------chHHHHHHHHHHhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSA--------TFLRVVG-SELIQKYLGD-------------GPKLVRELFRVADD 282 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~--------~~i~v~~-s~l~~~~~g~-------------~~~~v~~lf~~a~~ 282 (446)
..+.|+.|||||||||+.|-+|+-+.. .+..++- +++.....|. ..-.-..+....+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 346899999999999999999986532 2333332 3332211111 11112345667788
Q ss_pred cCCeEEEEcCcccc
Q 013281 283 LSPSIVFIDEIDAV 296 (446)
Q Consensus 283 ~~p~IL~IDEid~l 296 (446)
+.|.|+++|||..-
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 89999999999544
No 324
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.57 E-value=0.00062 Score=62.04 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=64.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhh------hh---hcC----------------Cc--hH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELI------QK---YLG----------------DG--PK 271 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~------~~---~~g----------------~~--~~ 271 (446)
.+.+...+.|.||+|+|||+|++.++..... --+.+++..+. .. |+. .. -.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 3456677999999999999999999986431 11222222110 00 000 00 11
Q ss_pred HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 272 LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 272 ~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
..+-.+..|-...|.++++||-..-. +......+.+++..+. . +..+|++|+..+.
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~ 159 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL----K-DKTLIWITHHLTG 159 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc----C-CCEEEEEecCHHH
Confidence 22334455556689999999985432 5566777788887652 2 3567777776554
No 325
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.57 E-value=0.00026 Score=60.62 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=39.7
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.|.|+.-+.+.+..+|...+.++. -..|--+.|+|+||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 478999999888888887654421 1223345689999999999999999975
No 326
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00073 Score=61.18 Aligned_cols=108 Identities=26% Similarity=0.365 Sum_probs=64.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhh-------hh---hcCCc---------------hHHH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELI-------QK---YLGDG---------------PKLV 273 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~-------~~---~~g~~---------------~~~v 273 (446)
.+.+...+.|.||+|+|||+|++.++..... --+.+++..+. .. |+.+. -..-
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 3456677999999999999999999986531 11222221110 00 00000 0111
Q ss_pred HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 013281 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (446)
Q Consensus 274 ~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l 343 (446)
+-.+..+-...|.+|++||-..-. +......+.+++.++. . +..+|++|+..+.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 158 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSAL----------DPETEALILEALRALA----K-GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 223444555689999999975432 5556677777777653 1 36788888876543
No 327
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.54 E-value=0.0041 Score=70.71 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=88.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec--hh-----hhh----hh---c-CC---------------chHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG--SE-----LIQ----KY---L-GD---------------GPKLVR 274 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~--s~-----l~~----~~---~-g~---------------~~~~v~ 274 (446)
.+-++|+||+|.|||+++..++...+ ++.-++. .+ +.. .. . +. ....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34599999999999999999887665 4433333 21 100 00 0 00 011222
Q ss_pred HHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCh-hhcCCCc
Q 013281 275 ELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDP-ALLRPGR 352 (446)
Q Consensus 275 ~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~-al~r~gR 352 (446)
.++..... ..|.+|+|||++.+. +..+...+..++..+ ..++.+|+++.....++- .+...+.
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~~~ 175 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVRDQ 175 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhcCc
Confidence 33333222 568899999999882 234455666666543 345666666654222221 1111112
Q ss_pred eeeEEEcC----CCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHH
Q 013281 353 IDRKIEFP----LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKA 403 (446)
Q Consensus 353 f~~~i~~~----~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~ 403 (446)
.+++. ..+.++-..++...+.. .+ ...+...+...|.|+ +.-+..
T Consensus 176 ---~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gw-p~~l~l 224 (903)
T PRK04841 176 ---LLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGW-ATALQL 224 (903)
T ss_pred ---ceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCCh-HHHHHH
Confidence 33444 56888888888765432 12 344577888889884 444443
No 328
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.53 E-value=0.0013 Score=62.19 Aligned_cols=110 Identities=22% Similarity=0.312 Sum_probs=62.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh--------------hcCC-------c-------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK--------------YLGD-------G------- 269 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~--------------~~g~-------~------- 269 (446)
|+.+...+++.|+||+|||+++..++... +.+.++++..+-... +... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 66677789999999999999999887542 556666655332211 0000 0
Q ss_pred -hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 270 -PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 270 -~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
......+........+..++||-+..+-.. .+...+....+..++..+. ..++.++++++.
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~~ 153 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLR----ETGVTTILTSEA 153 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEcc
Confidence 011112223334456789999988876211 1123334455666666653 235666666653
No 329
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.53 E-value=0.0005 Score=68.60 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=64.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---------hCCcEEEEechhhh------h--hhcCC---------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---------TSATFLRVVGSELI------Q--KYLGD--------------- 268 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~---------~~~~~i~v~~s~l~------~--~~~g~--------------- 268 (446)
|+....-+.|+||||||||.|+..+|-. .+...++++..+-+ + ...+.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 6677777999999999999999987732 13466777654310 0 00011
Q ss_pred -chHH---HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 269 -GPKL---VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 269 -~~~~---v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
.+.. +..+........+.+|+||-+-.++...+.. .+...+.+..+.+++..+..+....++.||++.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 1111 1222222233467899999999887543322 111222334455555544444444567666664
No 330
>PRK06762 hypothetical protein; Provisional
Probab=97.52 E-value=0.00041 Score=62.31 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
|.-++|+|+|||||||+|+.+++.++..++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 456889999999999999999999876677777666554
No 331
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.52 E-value=0.00048 Score=67.01 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~ 258 (446)
|+.+..-++|.|+||+|||+++..++... +..+++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 56667779999999999999999887653 556666654
No 332
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.51 E-value=0.00022 Score=72.19 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=45.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEe-chhhh---------hhhcCCchHHHHHHHHHHhhcCCeEEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSA----TFLRVV-GSELI---------QKYLGDGPKLVRELFRVADDLSPSIVFI 290 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~----~~i~v~-~s~l~---------~~~~g~~~~~v~~lf~~a~~~~p~IL~I 290 (446)
...++|.||+|+||||+++++.+.... .++.+. ..++. +..+|.........+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 456899999999999999999987642 232221 11211 1112322223455666677789999999
Q ss_pred cCcc
Q 013281 291 DEID 294 (446)
Q Consensus 291 DEid 294 (446)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9983
No 333
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.50 E-value=0.0007 Score=63.01 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVA 246 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia 246 (446)
+.++|+||+|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 334
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.50 E-value=0.0005 Score=65.66 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~ 258 (446)
|+.+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 67777789999999999999999887643 667776664
No 335
>PRK10536 hypothetical protein; Provisional
Probab=97.50 E-value=0.0016 Score=62.69 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=32.3
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
+..|.+.......+..++.. ..-++++||+|||||+||.+++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~---------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES---------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhc---------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 33455666666666665543 236999999999999999999884
No 336
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.50 E-value=0.00062 Score=61.44 Aligned_cols=104 Identities=26% Similarity=0.309 Sum_probs=61.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---c--------EEEEech-hhh-----hh----hcCCch--HHHHHHH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSA---T--------FLRVVGS-ELI-----QK----YLGDGP--KLVRELF 277 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~---~--------~i~v~~s-~l~-----~~----~~g~~~--~~v~~lf 277 (446)
.+.+...+.|.||+|+|||||++.++..... . +.++... .+. .. ...... ...+-.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHH
Confidence 3456667999999999999999999986421 0 1111000 000 00 111111 1123344
Q ss_pred HHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 278 RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 278 ~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
..|-...|.++++||-..-. +......+.+++..+ +..+|++|+..+
T Consensus 103 aral~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSAL----------DEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHcCCCEEEEECCcccc----------CHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 45555689999999975432 556667777777754 246788887653
No 337
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.49 E-value=0.00077 Score=61.17 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=61.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-----h-----------h-cCCchHHHHHHHHHHhhcCCeEEEE
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-----K-----------Y-LGDGPKLVRELFRVADDLSPSIVFI 290 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-----~-----------~-~g~~~~~v~~lf~~a~~~~p~IL~I 290 (446)
+|++|++|+|||++|..++...+.+.+++....-.+ . + ..+.+..+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 689999999999999999988776776665432211 0 0 1222333444443222 4679999
Q ss_pred cCcccccccccCCCCC-CcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 291 DEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 291 DEid~l~~~r~~~~~~-~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
|-+..+...-...... ........+..++..+.. .++.+|+++|.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnE 125 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNE 125 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECC
Confidence 9998886544221111 012234555566666543 34456666774
No 338
>PRK13695 putative NTPase; Provisional
Probab=97.48 E-value=0.0019 Score=58.65 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
.++|+|++|+|||||++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988765
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00078 Score=59.99 Aligned_cols=106 Identities=27% Similarity=0.380 Sum_probs=63.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhhh-------h---h---cCCchHHHHHHHHHHhhcCCe
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQ-------K---Y---LGDGPKLVRELFRVADDLSPS 286 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~~-------~---~---~g~~~~~v~~lf~~a~~~~p~ 286 (446)
+.+...+.|.||+|+|||+|+++++..... --+.+++..+.. . | +..++ ..+-.+..+-...|.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~ 100 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPD 100 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCC
Confidence 445567999999999999999999986542 122333322110 1 1 11122 222334445555789
Q ss_pred EEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 287 IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
++++||...=. +......+.+++..+.. . +..+|++|+..+.
T Consensus 101 i~ilDEp~~~l----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~ 142 (157)
T cd00267 101 LLLLDEPTSGL----------DPASRERLLELLRELAE---E-GRTVIIVTHDPEL 142 (157)
T ss_pred EEEEeCCCcCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHH
Confidence 99999986432 44455666666665422 2 3567888776543
No 340
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.45 E-value=0.0013 Score=63.81 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=29.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
|+.....++++||||||||++|..++... +-+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 56677789999999999999999886642 445555554
No 341
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.45 E-value=0.00044 Score=67.38 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=59.9
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEe-chhhh-
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVV-GSELI- 262 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v~-~s~l~- 262 (446)
.++.+++-.+++++.+++++..+ ...++|.||+|+||||+++++...... .++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~~--------------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEKP--------------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcC--------------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 45667776677777777777542 335899999999999999999877642 333331 11211
Q ss_pred ----hhhcC-CchHHHHHHHHHHhhcCCeEEEEcCcc
Q 013281 263 ----QKYLG-DGPKLVRELFRVADDLSPSIVFIDEID 294 (446)
Q Consensus 263 ----~~~~g-~~~~~v~~lf~~a~~~~p~IL~IDEid 294 (446)
+-.+. .........+..+....|.+|+|+|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 10111 111234566677777899999999994
No 342
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.44 E-value=0.0013 Score=75.04 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=99.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHH-HHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhc---------------C
Q 013281 221 GIKPPKGVILYGEPGTGKTLLA-KAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDL---------------S 284 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~La-raia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~---------------~ 284 (446)
.+...++++++||||+|||+|. -++-+++-..++.++.+.-. .++..+.- ++.-..+ .
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~-Ler~t~yy~~tg~~~l~PK~~vK 1563 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSV-LERETEYYPNTGVVRLYPKPVVK 1563 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHH-HHhhceeeccCCeEEEccCcchh
Confidence 3456789999999999999974 47777777777777765421 11222222 2221111 0
Q ss_pred CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCC--------CCeEEEEEeCCCCCCC-----hhhcCCC
Q 013281 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR--------GDVKVILATNRIESLD-----PALLRPG 351 (446)
Q Consensus 285 p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--------~~v~vI~atn~~~~ld-----~al~r~g 351 (446)
-.|||.|||. |. ...+-.+... -.+++-|-+-.||... .++.+.+|+|.+.+.. ..++|
T Consensus 1564 ~lVLFcDeIn-Lp-~~~~y~~~~v----I~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1564 DLVLFCDEIN-LP-YGFEYYPPTV----IVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred heEEEeeccC-Cc-cccccCCCce----EEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 1399999998 42 2111111111 1112112233455432 4689999999876532 22332
Q ss_pred ceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-c------------cCH--------HHHHHhCCCCcHHHHHHHHHHHHH
Q 013281 352 RIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-D------------VNL--------EEFVMTKDEFSGADIKAICTEAGL 410 (446)
Q Consensus 352 Rf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-~------------~~l--------~~la~~t~g~s~~di~~l~~~A~~ 410 (446)
-...+.+..|.....+.|...++....+-. . +.+ ........+|+|+++-..++....
T Consensus 1636 -~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245 1636 -KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred -CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHh
Confidence 123677788999888888887665432211 0 000 011111257899999888876555
Q ss_pred HHHH
Q 013281 411 LALR 414 (446)
Q Consensus 411 ~Al~ 414 (446)
+|-.
T Consensus 1715 yaeT 1718 (3164)
T COG5245 1715 YAET 1718 (3164)
T ss_pred HHhc
Confidence 4433
No 343
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.43 E-value=0.00069 Score=57.33 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
+++++||+|+|||+++-.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999998887765
No 344
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.43 E-value=0.00097 Score=60.50 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=63.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhh--------hh--hhcC---------------CchHHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL--------IQ--KYLG---------------DGPKLVR 274 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l--------~~--~~~g---------------~~~~~v~ 274 (446)
+.+...+.|.||+|+|||+|++.++..... --+.+++..+ .. .|+. ..-...+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 345566999999999999999999986421 1122222111 00 0100 0011123
Q ss_pred HHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 275 ~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
-.+..|-...|.++++||--.-. +......+.++|..+.. .+..+|++|+..+
T Consensus 105 v~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 34555556689999999975432 55667777778776532 2456778887654
No 345
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.43 E-value=0.00051 Score=69.24 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=65.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechh------hhh--hhcCC---------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSE------LIQ--KYLGD--------------- 268 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~------l~~--~~~g~--------------- 268 (446)
|+....-+.|+||||||||.|+..+|-.. +..+++++... +.+ ...|.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 56677778999999999999999886322 24566666533 110 00111
Q ss_pred -ch---HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 269 -GP---KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 269 -~~---~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
.+ ..+..+........+.+|+||-|-.++...+... +...+.++.+.+++..|..+....++.||++.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01 1112222223345688999999998875433322 11223345555555555443334566666664
No 346
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00051 Score=66.15 Aligned_cols=106 Identities=22% Similarity=0.297 Sum_probs=65.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEechh-------------------------hhhhhcCCchHHH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--FLRVVGSE-------------------------LIQKYLGDGPKLV 273 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~~--~i~v~~s~-------------------------l~~~~~g~~~~~v 273 (446)
.+.....+-|.|++||||||+++.+..-.... -+.+.+.+ +..+|..+....-
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34556779999999999999999999865421 12222211 1112333322222
Q ss_pred HH--HHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 274 RE--LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 274 ~~--lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
++ .+..|....|.+|+.||..+.. +-.+|..++.+|..+.. .-++..++.|..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~---~~~lt~lFIsHD 169 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQE---ELGLTYLFISHD 169 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHH---HhCCeEEEEEEE
Confidence 33 3344455679999999987764 55677888888877643 234555666543
No 347
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.42 E-value=0.0002 Score=69.75 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=56.3
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEe-chhhhhh
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---FLRVV-GSELIQK 264 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~---~i~v~-~s~l~~~ 264 (446)
++++++-.....+.+.+++... +....++++.||+||||||+++++....... ++.+- ..++.-.
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~ 170 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP 170 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S
T ss_pred cHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec
Confidence 4555544444445555555441 1235689999999999999999999876433 22222 1122110
Q ss_pred ------h-cCCchHHHHHHHHHHhhcCCeEEEEcCccc
Q 013281 265 ------Y-LGDGPKLVRELFRVADDLSPSIVFIDEIDA 295 (446)
Q Consensus 265 ------~-~g~~~~~v~~lf~~a~~~~p~IL~IDEid~ 295 (446)
. .........+++..+....|.+|+|.|+-.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 171 GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 0 011223456677788888999999999953
No 348
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.002 Score=66.09 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.|..++|+||+|+||||.+..+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998754
No 349
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.40 E-value=0.00075 Score=62.89 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~ 247 (446)
....++|+||.|+|||++.+.|+.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 345699999999999999999993
No 350
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.40 E-value=0.00077 Score=77.52 Aligned_cols=134 Identities=17% Similarity=0.230 Sum_probs=91.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh------hhhhcCCchHH---HHHHHHHHhhcCCeEEEEcCccccc
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL------IQKYLGDGPKL---VRELFRVADDLSPSIVFIDEIDAVG 297 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l------~~~~~g~~~~~---v~~lf~~a~~~~p~IL~IDEid~l~ 297 (446)
.+||.||+.||||++...+|+.++..|++++-.+- ++.|+.+.... -..++-.|.+.+ ..|++||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 59999999999999999999999999999987543 33443332221 123333444323 57899999765
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHhcCC---------CCCCCeEEEEEeCCCC------CCChhhcCCCceeeEEEcCCC
Q 013281 298 TKRYDAHSGGEREIQRTMLELLNQLDGF---------DSRGDVKVILATNRIE------SLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~ld~~---------~~~~~v~vI~atn~~~------~ld~al~r~gRf~~~i~~~~P 362 (446)
..++..+|++||..-..+ .+..++.+++|-|.|. .|..|++. ||- .++|..-
T Consensus 968 ----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFddi 1034 (4600)
T COG5271 968 ----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDDI 1034 (4600)
T ss_pred ----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcccC
Confidence 345677888887632211 1234566677778664 46778877 984 7788877
Q ss_pred CHHHHHHHHHHHH
Q 013281 363 DIKTRRRIFQIHT 375 (446)
Q Consensus 363 ~~~er~~Il~~~~ 375 (446)
..++...||...+
T Consensus 1035 pedEle~ILh~rc 1047 (4600)
T COG5271 1035 PEDELEEILHGRC 1047 (4600)
T ss_pred cHHHHHHHHhccC
Confidence 7788888887544
No 351
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.40 E-value=0.001 Score=61.98 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=34.5
Q ss_pred HHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 276 lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
.+..|....|.++++||.-+.. +++.....+.++..+.. .+...|+.|..
T Consensus 146 AIARALaM~P~vmLFDEPTSAL----------DPElv~EVL~vm~~LA~----eGmTMivVTHE 195 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSAL----------DPELVGEVLDVMKDLAE----EGMTMIIVTHE 195 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccC----------CHHHHHHHHHHHHHHHH----cCCeEEEEech
Confidence 3445555679999999986654 77777777777777642 34566676654
No 352
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.39 E-value=0.00079 Score=74.23 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=63.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEechhhhh----hh------------cCCchHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVVGSELIQ----KY------------LGDGPKLVRELFRVAD 281 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~---~~~~~i~v~~s~l~~----~~------------~g~~~~~v~~lf~~a~ 281 (446)
|+.....++|+||||||||+|+..++.. .+...++++..+-.. .. ....+..+..+-....
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 5667778999999999999999765442 345566665544221 00 1111222222223334
Q ss_pred hcCCeEEEEcCcccccc-cccCCCCCC-cHHHH-HHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 282 DLSPSIVFIDEIDAVGT-KRYDAHSGG-EREIQ-RTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~-~r~~~~~~~-~~~~~-~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
...+.+|+||-+..+.+ ...+...+. ....+ +.+.+.|..|..+....++.+|++-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45789999999999985 222222111 12222 2233444444433334566666653
No 353
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.39 E-value=0.00096 Score=60.94 Aligned_cols=109 Identities=23% Similarity=0.273 Sum_probs=63.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhh---------------------------hhhhcCCchH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL---------------------------IQKYLGDGPK 271 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l---------------------------~~~~~g~~~~ 271 (446)
.+.+...+.|.||+|+|||||++.++..... --+.+++..+ ..........
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3456667999999999999999999986531 1222322111 0011111111
Q ss_pred --HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 272 --LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 272 --~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
..+-.+..+-...|.++++||-..-. +......+.+++..+.. ..+..+|++|+..+.
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 11223444455678999999975432 45556677777766531 114567888876553
No 354
>PRK04328 hypothetical protein; Provisional
Probab=97.39 E-value=0.0022 Score=61.90 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=28.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~---~~~~~i~v~~ 258 (446)
|+.+...+|++||||||||+|+..++.+ .+.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 6777778999999999999999876643 2345555544
No 355
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.013 Score=55.90 Aligned_cols=136 Identities=11% Similarity=0.075 Sum_probs=92.6
Q ss_pred CceEEEEcCCC-CcHHHHHHHHHHHhCC---------cEEEEechhhhhhh-cCCchHHHHHHHHHHh----hcCCeEEE
Q 013281 225 PKGVILYGEPG-TGKTLLAKAVANSTSA---------TFLRVVGSELIQKY-LGDGPKLVRELFRVAD----DLSPSIVF 289 (446)
Q Consensus 225 ~~~vLL~GppG-tGKT~Laraia~~~~~---------~~i~v~~s~l~~~~-~g~~~~~v~~lf~~a~----~~~p~IL~ 289 (446)
....||.|..+ +||..++..++..+-+ .|+.+....-..+. -.-.-..+|++...+. .....|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 45799999998 9999999988876532 23333211100000 0112344555544443 23456999
Q ss_pred EcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHH
Q 013281 290 IDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (446)
Q Consensus 290 IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~ 369 (446)
|+++|.+ +.+....|+..|++ +..++.+|+.|..+..+.|.+++ |+. .+.|+.|+...-.+
T Consensus 95 I~~ae~m-----------t~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELM-----------NLNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYNE 155 (263)
T ss_pred EechHHh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHHH
Confidence 9999999 55566666666653 45678899999889999999988 984 89999999888888
Q ss_pred HHHHHHccCC
Q 013281 370 IFQIHTSRMT 379 (446)
Q Consensus 370 Il~~~~~~~~ 379 (446)
+....+..+.
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 7777666554
No 356
>PRK13947 shikimate kinase; Provisional
Probab=97.38 E-value=0.00018 Score=64.95 Aligned_cols=31 Identities=39% Similarity=0.507 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
+++|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999986543
No 357
>PRK03839 putative kinase; Provisional
Probab=97.38 E-value=0.00016 Score=66.00 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
.|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999886643
No 358
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.37 E-value=0.00096 Score=66.75 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=64.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechhhh------h--hhcCCc--------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSELI------Q--KYLGDG-------------- 269 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~l~------~--~~~g~~-------------- 269 (446)
|+....-++|+||||||||+++..+|... +..+++++..+-+ + ...|..
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 56677789999999999999999998653 2356676654410 0 000110
Q ss_pred --h---HHHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 270 --P---KLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 270 --~---~~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
. ..+..+...... ..+.+|+||=|-.+........ +...+.++.+.+++..+..+....++.||++..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0 111222222333 4567999999998864322211 111222343444444443333345677777654
No 359
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.37 E-value=0.00079 Score=61.16 Aligned_cols=106 Identities=22% Similarity=0.274 Sum_probs=59.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh----------------h-cCCchHHHHHHHHHHhhcCCeEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK----------------Y-LGDGPKLVRELFRVADDLSPSIVF 289 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~----------------~-~g~~~~~v~~lf~~a~~~~p~IL~ 289 (446)
.+++.|+||||||++|..++..++.+++++........ | .-+.+..+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999998876666544322111 0 001111233333221 12356899
Q ss_pred EcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 290 IDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 290 IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
||-+..+......... .......+.+++..+.. .+..+|+++|.
T Consensus 82 ID~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~----~~~tvVlVs~E 125 (170)
T PRK05800 82 VDCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQ----LPAKIILVTNE 125 (170)
T ss_pred ehhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHc----CCCCEEEEEcC
Confidence 9999888643321100 12234445556665543 23345666664
No 360
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.37 E-value=0.0029 Score=60.50 Aligned_cols=132 Identities=15% Similarity=0.264 Sum_probs=74.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEechhhhhhh--------cCC---c---hHHHHH----HHHHHh--
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSAT--FLRVVGSELIQKY--------LGD---G---PKLVRE----LFRVAD-- 281 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~--~i~v~~s~l~~~~--------~g~---~---~~~v~~----lf~~a~-- 281 (446)
.+-.+++.|++|||||+++..+...+... .+.+.++...+.| +.. . +..+.. +-..+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 35579999999999999999998766432 2222222211111 100 0 111111 111111
Q ss_pred -h---cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEE
Q 013281 282 -D---LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKI 357 (446)
Q Consensus 282 -~---~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i 357 (446)
. ..+.+|+||++..- ..-+..+.+++.... .-++.+|..+.....+++.++. -++..+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~------------~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK------------KLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCCc------------hhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 1 23579999997321 112344666665432 2468899999888899999876 666666
Q ss_pred EcCCCCHHHHHHHHHHH
Q 013281 358 EFPLPDIKTRRRIFQIH 374 (446)
Q Consensus 358 ~~~~P~~~er~~Il~~~ 374 (446)
-+. .+..+...|++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 665 4555554444443
No 361
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.37 E-value=0.00057 Score=67.82 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=46.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEe-chhhhh-------hhcCCchHHHHHHHHHHhhcCCeEEEEc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS-----ATFLRVV-GSELIQ-------KYLGDGPKLVRELFRVADDLSPSIVFID 291 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~-----~~~i~v~-~s~l~~-------~~~g~~~~~v~~lf~~a~~~~p~IL~ID 291 (446)
..++++.||+|+||||++++++.... ..++.+- ..++.- -...........++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 56899999999999999999998762 2222221 112110 0011122245677888888899999999
Q ss_pred Ccc
Q 013281 292 EID 294 (446)
Q Consensus 292 Eid 294 (446)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 362
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.35 E-value=0.0017 Score=67.67 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=44.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh-------h--------hcCC-----chHHHHHHHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ-------K--------YLGD-----GPKLVRELFRV 279 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~-------~--------~~g~-----~~~~v~~lf~~ 279 (446)
..|..++|+|++|+||||++..+|..+ +..+..+++..+.. . +.+. ....+...+..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 356789999999999999999999866 34455554432211 0 1111 11223444444
Q ss_pred HhhcCCeEEEEcCcccc
Q 013281 280 ADDLSPSIVFIDEIDAV 296 (446)
Q Consensus 280 a~~~~p~IL~IDEid~l 296 (446)
+... .+|+||....+
T Consensus 173 ~~~~--DvVIIDTAGr~ 187 (437)
T PRK00771 173 FKKA--DVIIVDTAGRH 187 (437)
T ss_pred hhcC--CEEEEECCCcc
Confidence 4443 79999998665
No 363
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.34 E-value=0.00054 Score=68.46 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=64.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh------C---CcEEEEechhhhh--------hhcCCc--------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST------S---ATFLRVVGSELIQ--------KYLGDG-------------- 269 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~------~---~~~i~v~~s~l~~--------~~~g~~-------------- 269 (446)
|+.+..-+.++||||+|||+++..++... + ...++++..+.+. ...+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 66777779999999999999999887522 1 2556666544111 000111
Q ss_pred --hH---HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 270 --PK---LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 270 --~~---~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
.. .+..+........+.+|+||-|-.++...+... +.....+..|.+++..+..+....++.||++.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 11 112222223344678999999998864322211 11112344455666555444444567777664
No 364
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0022 Score=64.99 Aligned_cols=99 Identities=25% Similarity=0.445 Sum_probs=69.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEechhhhhh------hcCC--------chHHHHHHHHHHhhcC
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELIQK------YLGD--------GPKLVRELFRVADDLS 284 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~--~~~i~v~~s~l~~~------~~g~--------~~~~v~~lf~~a~~~~ 284 (446)
|+-+..-+||-|.||.|||||.-.++..+. .++++|++.+-.+. .++. .+-.+..++.......
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 456667799999999999999999888764 27999998775432 2221 2344677888888899
Q ss_pred CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHH
Q 013281 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (446)
Q Consensus 285 p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL 319 (446)
|.+++||-|..+....-++..++-..+...-.+|+
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~ 203 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELM 203 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHH
Confidence 99999999999987665554444333333333333
No 365
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.33 E-value=0.016 Score=59.56 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=50.6
Q ss_pred EEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC---CCCCChhhcCCCceeeEEEcCCCC
Q 013281 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR---IESLDPALLRPGRIDRKIEFPLPD 363 (446)
Q Consensus 287 IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~---~~~ld~al~r~gRf~~~i~~~~P~ 363 (446)
||+||.+..-. ..+..+...|.+|-..+-. .+---||+.|+. ...|..+| |.|.-+.|.+...+
T Consensus 151 VVVIdnF~~k~--------~~~~~iy~~laeWAa~Lv~---~nIAHVIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das 217 (431)
T PF10443_consen 151 VVVIDNFLHKA--------EENDFIYDKLAEWAASLVQ---NNIAHVIFLTDDVSYSKPLSKAL--PNRVFKTISLSDAS 217 (431)
T ss_pred EEEEcchhccC--------cccchHHHHHHHHHHHHHh---cCccEEEEECCCCchhhhHHHhC--CCCceeEEeecCCC
Confidence 99999995542 1134555666666554421 122235555543 23466666 66877899999999
Q ss_pred HHHHHHHHHHHHccC
Q 013281 364 IKTRRRIFQIHTSRM 378 (446)
Q Consensus 364 ~~er~~Il~~~~~~~ 378 (446)
.+.-+.++..++...
T Consensus 218 ~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 218 PESAKQYVLSQLDED 232 (431)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999888887653
No 366
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.33 E-value=0.0022 Score=60.46 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~ 247 (446)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6699999999999999999983
No 367
>PRK05973 replicative DNA helicase; Provisional
Probab=97.32 E-value=0.001 Score=63.68 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s 259 (446)
|+.+...++|.|+||+|||+++-.++... +.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 66677789999999999999999887644 5566666543
No 368
>PRK00625 shikimate kinase; Provisional
Probab=97.32 E-value=0.00022 Score=65.00 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
+|+|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999887664
No 369
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00018 Score=62.95 Aligned_cols=31 Identities=32% Similarity=0.688 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
.++|++|-||||||+++..||..++.+++.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 4699999999999999999999999888765
No 370
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.31 E-value=0.00022 Score=62.88 Aligned_cols=39 Identities=31% Similarity=0.577 Sum_probs=30.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g 267 (446)
+++|+|+||+|||++|+.+|..++.+++.. ..+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcC
Confidence 379999999999999999999999887744 344444333
No 371
>PTZ00035 Rad51 protein; Provisional
Probab=97.31 E-value=0.0011 Score=66.78 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=64.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechhh---------hhhhc---------------C
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSEL---------IQKYL---------------G 267 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~l---------~~~~~---------------g 267 (446)
|+....-+.|+||||||||+|+..++-.. +...++++...- ...+- -
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 67777779999999999999999887532 234556655431 11100 0
Q ss_pred CchHH---HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 268 DGPKL---VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 268 ~~~~~---v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
..+.. +..+........+.+|+||=|-.++...+... +...+.++.+.+++..+..+....++.||++-
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvtN 265 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVITN 265 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEec
Confidence 01111 11122222345678999999998865432211 11223344556666555443334567666553
No 372
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.31 E-value=0.0017 Score=65.80 Aligned_cols=112 Identities=13% Similarity=0.282 Sum_probs=59.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEec-------hhhhhhh---c-C----CchHH-H---HHHHHHHh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSA-----TFLRVVG-------SELIQKY---L-G----DGPKL-V---RELFRVAD 281 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~-----~~i~v~~-------s~l~~~~---~-g----~~~~~-v---~~lf~~a~ 281 (446)
..++|+||||||||+|++.+++.+.. .++.+-. .++.... + . +.... + ..+...|.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999987643 2222111 1222111 0 0 11111 1 11122222
Q ss_pred ----hcCCeEEEEcCcccccccccC-------C-CCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 282 ----DLSPSIVFIDEIDAVGTKRYD-------A-HSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 282 ----~~~p~IL~IDEid~l~~~r~~-------~-~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
....-+|++||+..++..... . ..+-+......+-.++..-......+.+.+|+|.
T Consensus 214 ~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~Tv 281 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGAARNIEEGGSLTIIATA 281 (380)
T ss_pred HHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHhcCCCCCCcchhheEEE
Confidence 223469999999988643221 1 1233445555566676655444334566666554
No 373
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.30 E-value=0.0014 Score=65.37 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=31.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSE 260 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~ 260 (446)
|+....-++|+||||||||+++..+|... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56667778999999999999999998653 23667776544
No 374
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00034 Score=63.23 Aligned_cols=49 Identities=27% Similarity=0.485 Sum_probs=37.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRV 279 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~ 279 (446)
.+++|.|++|+||||+.+++|+.++.+|+-. ..++.+..| ..+.++|+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~--D~~Ie~~~g---~sI~eIF~~ 51 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT--DQEIEKRTG---MSIAEIFEE 51 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc--hHHHHHHHC---cCHHHHHHH
Confidence 4699999999999999999999999999754 455555554 234555554
No 375
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.30 E-value=0.00023 Score=64.70 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
.+-++|.|+||+||||+|+.++..++.+++.++...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 3468999999999999999999999888776654433
No 376
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.29 E-value=0.0015 Score=66.72 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=59.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEechhhhhhhc-CCchHHHHHHHHH-------------------H
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSELIQKYL-GDGPKLVRELFRV-------------------A 280 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v~~s~l~~~~~-g~~~~~v~~lf~~-------------------a 280 (446)
.+..+++.||.|||||++.+++.+.+.. .++.+....+....+ |. ..++..|.. .
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G--~T~hs~f~i~~~~~~~~~~~~~~~~~~~~ 98 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGG--RTIHSFFGIPINNNEKSQCKISKNSRLRE 98 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCC--cchHHhcCccccccccccccccccchhhh
Confidence 4678999999999999999999887743 333333322222222 11 011111111 1
Q ss_pred hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC----CCCCCeEEEEEeCC
Q 013281 281 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF----DSRGDVKVILATNR 339 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~----~~~~~v~vI~atn~ 339 (446)
....-.+|+||||-.+ +......+...|..+.+- ..-+++.||+...-
T Consensus 99 ~l~~~~~lIiDEism~-----------~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GDf 150 (364)
T PF05970_consen 99 RLRKADVLIIDEISMV-----------SADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGDF 150 (364)
T ss_pred hhhhheeeecccccch-----------hHHHHHHHHHhhhhhhcccchhhhcCcceEEeehhh
Confidence 1112359999999777 444555555556555442 22367778877643
No 377
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.0015 Score=61.84 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=36.7
Q ss_pred HHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 276 lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
.+..|-...|.+|++||.-... +..+|..++.+|.++.. ..+..+|+.|...
T Consensus 151 aIARAL~~~PklLIlDEptSaL----------D~siQa~IlnlL~~l~~---~~~lt~l~IsHdl 202 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSAL----------DVSVQAQILNLLLELKK---ERGLTYLFISHDL 202 (252)
T ss_pred HHHHHhccCCCEEEecCchhhh----------cHHHHHHHHHHHHHHHH---hcCceEEEEeCcH
Confidence 3444555678999999986554 66788888888887743 3466777777653
No 378
>PRK14532 adenylate kinase; Provisional
Probab=97.26 E-value=0.00027 Score=64.93 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
.++|.|||||||||+|+.+|+.++..+ ++..+++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHHH
Confidence 489999999999999999999998655 4555555543
No 379
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.25 E-value=0.0011 Score=60.99 Aligned_cols=70 Identities=24% Similarity=0.452 Sum_probs=44.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEech-hhhh---hh----------cCCchHHHHHHHHHHhhcCCeE
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGS-ELIQ---KY----------LGDGPKLVRELFRVADDLSPSI 287 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s-~l~~---~~----------~g~~~~~v~~lf~~a~~~~p~I 287 (446)
....++|.||+|+||||++++++..... ..+.+... ++.. .+ .+.......+++..+....|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 3567999999999999999999987642 22222111 1100 00 0111223456677777778999
Q ss_pred EEEcCc
Q 013281 288 VFIDEI 293 (446)
Q Consensus 288 L~IDEi 293 (446)
++++|+
T Consensus 104 i~igEi 109 (186)
T cd01130 104 IIVGEV 109 (186)
T ss_pred EEEEcc
Confidence 999999
No 380
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.25 E-value=0.00026 Score=64.56 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
|+|+|||||||||+|+.+|..++. ..++.++++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHHH
Confidence 789999999999999999999975 445555555443
No 381
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.25 E-value=0.0023 Score=58.82 Aligned_cols=101 Identities=20% Similarity=0.173 Sum_probs=53.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH-----HhCCc--------------EEEEechhhhhhhcCCchHHHHHHHHHHhh-cCCeE
Q 013281 228 VILYGEPGTGKTLLAKAVAN-----STSAT--------------FLRVVGSELIQKYLGDGPKLVRELFRVADD-LSPSI 287 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~-----~~~~~--------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~-~~p~I 287 (446)
++|+||.|+|||++.+.++- +.|.+ +..+...+......+.....+.++...... ..|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 23321 112222222222222333333333333222 26899
Q ss_pred EEEcCcccccccccCCCCCCcHH-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 288 VFIDEIDAVGTKRYDAHSGGERE-IQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 288 L~IDEid~l~~~r~~~~~~~~~~-~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
+++||...-. +.. ....+..++..+.. ..+..+|++|+..+
T Consensus 82 lllDEp~~g~----------d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRGT----------STYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCCC----------CHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 9999985432 222 22223344444321 12456788887654
No 382
>PRK13949 shikimate kinase; Provisional
Probab=97.25 E-value=0.00028 Score=64.06 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
.++|+|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999887765
No 383
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.25 E-value=0.007 Score=57.32 Aligned_cols=38 Identities=34% Similarity=0.412 Sum_probs=28.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
|+.....++|+||||||||+++..++... +...++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67778889999999999999999876432 445555554
No 384
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.0013 Score=59.58 Aligned_cols=106 Identities=24% Similarity=0.316 Sum_probs=62.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhh--------------h---hhcC---------CchHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELI--------------Q---KYLG---------DGPKLV 273 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~--------------~---~~~g---------~~~~~v 273 (446)
+.+...+.|.||+|+|||||++.++..... --+.+++..+. + -+.+ .+-...
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 445567999999999999999999985421 11111111100 0 0000 001112
Q ss_pred HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 274 ~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
+-.+..|-...|.++++||-..-. +......+.++|..+.. . +..+|++|+..+
T Consensus 103 rv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 234555556689999999985543 55667777788876532 2 345777776544
No 385
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.24 E-value=0.00088 Score=67.39 Aligned_cols=70 Identities=23% Similarity=0.381 Sum_probs=46.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEE-echhhhh-----------hh--cCCchHHHHHHHHHHhhcCCeEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSA--TFLRV-VGSELIQ-----------KY--LGDGPKLVRELFRVADDLSPSIV 288 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v-~~s~l~~-----------~~--~g~~~~~v~~lf~~a~~~~p~IL 288 (446)
..++++.|++|+||||+++++...... .++.+ +..++.- .. .+...-...+++..+....|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 678999999999999999999987753 22221 1111110 00 11122235678888888899999
Q ss_pred EEcCcc
Q 013281 289 FIDEID 294 (446)
Q Consensus 289 ~IDEid 294 (446)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999984
No 386
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.23 E-value=0.0018 Score=68.71 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=54.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh------hcC----------------------Cc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK------YLG----------------------DG 269 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~------~~g----------------------~~ 269 (446)
|+.+...+|+.||||||||+|+-.++... +-+.++++..+-... .+| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67778889999999999999999888754 446666665442221 011 11
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCccccc
Q 013281 270 PKLVRELFRVADDLSPSIVFIDEIDAVG 297 (446)
Q Consensus 270 ~~~v~~lf~~a~~~~p~IL~IDEid~l~ 297 (446)
...+..+.+......|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3455666677777789999999998774
No 387
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00057 Score=62.70 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...|.+.||+|||||||...+|...
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 45566679999999999999999999743
No 388
>PRK13948 shikimate kinase; Provisional
Probab=97.22 E-value=0.00076 Score=61.99 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=34.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g 267 (446)
++..++|.|.+|||||++++.+|+.++.+|+..+ .++....|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 4678999999999999999999999999998554 44444444
No 389
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.22 E-value=0.0014 Score=66.07 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=66.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechh------hhhh--hcCC---------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSE------LIQK--YLGD--------------- 268 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~------l~~~--~~g~--------------- 268 (446)
|+.+..-+.++|+||+|||+++..+|-.. +...++++... +.+. ..+.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 56667778999999999999999887432 12567776654 1110 0010
Q ss_pred -chH---HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 269 -GPK---LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 269 -~~~---~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
... .+..+........+.+|+||=|-.++...+... +.....+..|.+++..+..+....++.||++..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 111 111122223445688999999998865432221 112233445666766665544456777777643
No 390
>PRK04040 adenylate kinase; Provisional
Probab=97.22 E-value=0.0014 Score=60.56 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--CCcEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST--SATFL 254 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~--~~~~i 254 (446)
+.-++|+|+|||||||+++.+++.+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4568999999999999999999998 45543
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0015 Score=66.48 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.....++|+||+|+||||++..+|..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999753
No 392
>PRK14974 cell division protein FtsY; Provisional
Probab=97.20 E-value=0.0034 Score=63.15 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=43.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh-------hhhh---cC---------Cc-hHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL-------IQKY---LG---------DG-PKLVRELFRVA 280 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l-------~~~~---~g---------~~-~~~v~~lf~~a 280 (446)
.|.-++|+||||+||||++..+|..+ +..+..+.+..+ ...+ .| .. ...+.+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35679999999999999888888754 334444444311 1111 11 11 12233444444
Q ss_pred hhcCCeEEEEcCcccc
Q 013281 281 DDLSPSIVFIDEIDAV 296 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l 296 (446)
......+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 4445579999998766
No 393
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.20 E-value=0.0016 Score=62.75 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 276 lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
++..|-...|.||++||=-... +-.-|-.+++++..+. ...+..+|+++..
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~L----------Di~~Q~evl~ll~~l~---~~~~~tvv~vlHD 198 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHL----------DIAHQIEVLELLRDLN---REKGLTVVMVLHD 198 (258)
T ss_pred HHHHHHhcCCCEEEeCCCcccc----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecC
Confidence 4455555678899999965443 4445666777777663 2346778888764
No 394
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.19 E-value=0.0037 Score=55.94 Aligned_cols=133 Identities=20% Similarity=0.244 Sum_probs=79.0
Q ss_pred EcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHH
Q 013281 231 YGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGERE 310 (446)
Q Consensus 231 ~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~ 310 (446)
.+.+||||||++.++++.++- +-.+...++.++ ...+.+..+.+........+||+|--..+. ++
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~-----------re 69 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQK-----------RE 69 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchH-----------HH
Confidence 588999999999999999873 333444444332 345566666666644445699999765552 22
Q ss_pred HHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCChh--------hcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC
Q 013281 311 IQRTMLELLNQLDG--FDSRGDVKVILATNRIESLDPA--------LLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (446)
Q Consensus 311 ~~~~l~~lL~~ld~--~~~~~~v~vI~atn~~~~ld~a--------l~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~ 379 (446)
-..|.+.+..+.. +....++.+|+-.-..+.-.+. ++.+|==...|.....+...-..|+..++.++.
T Consensus 70 -R~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 70 -RKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred -HHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 2344445444322 2234578888877554431222 223221223666666677777888888877643
No 395
>PRK14531 adenylate kinase; Provisional
Probab=97.19 E-value=0.0004 Score=63.70 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
..++++||||+||||+++.+|..++.+++. +.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHHH
Confidence 359999999999999999999999877654 444443
No 396
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0013 Score=63.28 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 274 ~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
|-++..|-...|.++++||-- .+-+...+..+.++|.++.. . +..|++.|.....
T Consensus 147 RV~lARAL~~~p~lllLDEP~----------~gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~~ 201 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPF----------TGVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHhccCCCEEEecCCc----------ccCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcHH
Confidence 345666667789999999962 23366678888999988753 3 6778888876553
No 397
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.18 E-value=0.0012 Score=67.33 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
....++|+||||||||+|++.+++...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 445599999999999999999999754
No 398
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.16 E-value=0.0027 Score=58.77 Aligned_cols=105 Identities=21% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh--CC--cEEEEechhhh------------hh---hcC--------------C
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST--SA--TFLRVVGSELI------------QK---YLG--------------D 268 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~--~~--~~i~v~~s~l~------------~~---~~g--------------~ 268 (446)
+.+...+.|.||+|+|||+|++.++... .. --+.+++..+. +. +.+ .
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~ 111 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG 111 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhcc
Confidence 4556679999999999999999999876 31 01111111000 00 000 0
Q ss_pred c--hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 269 G--PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 269 ~--~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
. -...+-.+..|-...|.++++||-..-. +......+.++|.++.. . +..+|++|+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~~---~-~~tiii~sh~~ 171 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGL----------DSSSALQVMSLLRRLAD---T-GRTIICSIHQP 171 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHHh---C-CCEEEEEecCc
Confidence 0 0111223344445578999999975432 55667777788876532 2 45677777654
No 399
>PRK06217 hypothetical protein; Validated
Probab=97.16 E-value=0.0004 Score=63.68 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
.|+|.|+||+||||+|+++++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876543
No 400
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.16 E-value=0.0004 Score=61.27 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
++|+|+||+||||+|+.++..++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999999877654
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.15 E-value=0.0024 Score=57.39 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~ 247 (446)
++..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 402
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.13 E-value=0.0038 Score=59.23 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~ 247 (446)
....++|.||+|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999987
No 403
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.13 E-value=0.0024 Score=63.53 Aligned_cols=137 Identities=23% Similarity=0.312 Sum_probs=79.8
Q ss_pred CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHH
Q 013281 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVR 274 (446)
Q Consensus 195 Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~ 274 (446)
|-.+.+.-+.+++...|... ....+-++|+|+.|+|||++++.|..-+|.....+..+..... .+..
T Consensus 53 ~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~-~~~~----- 119 (304)
T TIGR01613 53 GDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNE-FQEH----- 119 (304)
T ss_pred CCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhh-ccCC-----
Confidence 34456777888877755541 2345669999999999999999999888865544333333332 1111
Q ss_pred HHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC----------CCCCCCeEEEEEeCCCCCC-
Q 013281 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG----------FDSRGDVKVILATNRIESL- 343 (446)
Q Consensus 275 ~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~----------~~~~~~v~vI~atn~~~~l- 343 (446)
-|..+.-..-.++++||++.-. . .+ ...+-.+.. -|. +.-.....+|++||..-.+
T Consensus 120 -~f~~a~l~gk~l~~~~E~~~~~--~------~~---~~~lK~lt~-gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~ 186 (304)
T TIGR01613 120 -RFGLARLEGKRAVIGDEVQKGY--R------DD---ESTFKSLTG-GDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR 186 (304)
T ss_pred -CchhhhhcCCEEEEecCCCCCc--c------cc---HHhhhhhhc-CCeEEeecccCCcEEEEEeeEEEEEcCCCCccC
Confidence 1344444445799999986321 0 01 122333321 111 1112357789999985443
Q ss_pred --ChhhcCCCceeeEEEcC
Q 013281 344 --DPALLRPGRIDRKIEFP 360 (446)
Q Consensus 344 --d~al~r~gRf~~~i~~~ 360 (446)
+.++.| |+ ..|.|+
T Consensus 187 ~~~~a~~R--R~-~vi~f~ 202 (304)
T TIGR01613 187 GFDGGIKR--RL-RIIPFT 202 (304)
T ss_pred CCChhhee--eE-EEEecc
Confidence 467777 77 366654
No 404
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00071 Score=61.93 Aligned_cols=34 Identities=26% Similarity=0.577 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
.|+|.||||+||||+|+.||+.++ +..++-..+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHh
Confidence 489999999999999999999954 4455544443
No 405
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.12 E-value=0.0015 Score=60.47 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...+.|.||+|+|||||+++++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566679999999999999999999853
No 406
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.12 E-value=0.0016 Score=61.54 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~ 247 (446)
+....-+.|.||+|||||||...++.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44555699999999999999999986
No 407
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.12 E-value=0.0049 Score=65.34 Aligned_cols=110 Identities=22% Similarity=0.259 Sum_probs=63.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEechhhhhh--------------hc----------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS----TSATFLRVVGSELIQK--------------YL---------------- 266 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~----~~~~~i~v~~s~l~~~--------------~~---------------- 266 (446)
|+...+.+|++||||||||++|..++.+ .+-+.++++..+-... +.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~ 96 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEG 96 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhcc
Confidence 6777888999999999999999988543 2556666655421110 00
Q ss_pred ------CCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 267 ------GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 267 ------g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
-.....+..+........+..|+||=+..+.... .......+.+..++..+. ..++.+|+++..
T Consensus 97 ~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~-----~~~~~~r~~l~~Li~~L~----~~g~TvLLtsh~ 166 (484)
T TIGR02655 97 QDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQY-----DAVSVVRREIFRLVARLK----QIGVTTVMTTER 166 (484)
T ss_pred ccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhc-----CchHHHHHHHHHHHHHHH----HCCCEEEEEecC
Confidence 0112233444555556677889999776653221 111223344555665543 235566666654
No 408
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.11 E-value=0.0018 Score=64.80 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=45.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEe-chhhhhh------hcCCchHHHHHHHHHHhhcCCeEEEEcC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS-----ATFLRVV-GSELIQK------YLGDGPKLVRELFRVADDLSPSIVFIDE 292 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~-----~~~i~v~-~s~l~~~------~~g~~~~~v~~lf~~a~~~~p~IL~IDE 292 (446)
..++++.|++|+||||++++++.... ..++.+- ..++.-. ......-....++..+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 56899999999999999999998762 2222221 2222210 0011112356677788888999999999
Q ss_pred c
Q 013281 293 I 293 (446)
Q Consensus 293 i 293 (446)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 409
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.11 E-value=0.00044 Score=63.54 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
|+|+||||+|||++|+.+|..++..+ ++..+++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~~~~ 37 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLREE 37 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHHHHH
Confidence 79999999999999999999987665 4455555443
No 410
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.11 E-value=0.00056 Score=65.19 Aligned_cols=38 Identities=21% Similarity=0.618 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
+..++|.||||+||||+|+.+|+.++.+++.+ .+++..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr~ 43 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILRE 43 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHHH
Confidence 45699999999999999999999998766544 455443
No 411
>PRK14530 adenylate kinase; Provisional
Probab=97.11 E-value=0.00053 Score=64.56 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
.++|.||||+||||+|+.||+.++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998776543
No 412
>PTZ00202 tuzin; Provisional
Probab=97.11 E-value=0.015 Score=60.08 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=48.9
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s 259 (446)
-...+.+|.+....+|.+.+... ....+.-+.|+||+|||||+|++.+...++.+.+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~----------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL----------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc----------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34567899999999999988642 233455788999999999999999999888666665543
No 413
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.11 E-value=0.00094 Score=62.17 Aligned_cols=135 Identities=21% Similarity=0.273 Sum_probs=60.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh-cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCC
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY-LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG 306 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~-~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~ 306 (446)
++|+||+|||||.+|-++|+.++.+++..+.-...... +|.+.....++ .+-.=++|||-..- .
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el------~~~~RiyL~~r~l~---------~ 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSEL------KGTRRIYLDDRPLS---------D 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGG------TT-EEEES----GG---------G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHH------cccceeeecccccc---------C
Confidence 78999999999999999999999999998876554432 33221111111 11123778864322 1
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCh-----hhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCC
Q 013281 307 GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDP-----ALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (446)
Q Consensus 307 ~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~-----al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~ 380 (446)
+.-........|+..+......+. +|+-.-....+.. -.-.+.+. ....++.|+.+.-..-.+...++|-.
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~~~--~IlEGGSISLl~~m~~~~~w~~~f~w-~i~rl~l~d~~~f~~ra~~Rv~~ML~ 144 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAHGG--LILEGGSISLLNCMAQDPYWSLDFRW-HIRRLRLPDEEVFMARAKRRVRQMLR 144 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTSSE--EEEEE--HHHHHHHHH-TTTSSSSEE-EEEE-----HHHHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHHHhccccCc--eEEeCchHHHHHHHHhcccccCCCeE-EEEEEECCChHHHHHHHHHHHHHhcC
Confidence 122233344455555555444333 3333322211111 11011122 36677888888776666666665543
No 414
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.10 E-value=0.0024 Score=70.37 Aligned_cols=63 Identities=25% Similarity=0.324 Sum_probs=40.2
Q ss_pred HHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceee
Q 013281 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDR 355 (446)
Q Consensus 276 lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~ 355 (446)
.+..|--..|.||++||.-+-. +.+..+.+.+.|.++. .+..+|+.|++... ++ ++|+
T Consensus 619 alARaLl~~P~ILlLDEaTSaL----------D~~sE~~I~~~L~~~~-----~~~T~I~IaHRl~t-----i~--~adr 676 (709)
T COG2274 619 ALARALLSKPKILLLDEATSAL----------DPETEAIILQNLLQIL-----QGRTVIIIAHRLST-----IR--SADR 676 (709)
T ss_pred HHHHHhccCCCEEEEeCccccc----------CHhHHHHHHHHHHHHh-----cCCeEEEEEccchH-----hh--hccE
Confidence 3444455689999999985543 5566677777776653 24567777777553 33 5555
Q ss_pred EEEcC
Q 013281 356 KIEFP 360 (446)
Q Consensus 356 ~i~~~ 360 (446)
.+.+.
T Consensus 677 IiVl~ 681 (709)
T COG2274 677 IIVLD 681 (709)
T ss_pred EEEcc
Confidence 55554
No 415
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.10 E-value=0.00049 Score=60.01 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
++|.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987765
No 416
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.09 E-value=0.0013 Score=67.07 Aligned_cols=69 Identities=25% Similarity=0.310 Sum_probs=45.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEe-chhhh-----------hhhcCCchHHHHHHHHHHhhcCCeEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTS-----ATFLRVV-GSELI-----------QKYLGDGPKLVRELFRVADDLSPSIV 288 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~-----~~~i~v~-~s~l~-----------~~~~g~~~~~v~~lf~~a~~~~p~IL 288 (446)
..+|++||+|+||||+++++.+... ...+.+- ..++. +..+|.........+..+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3589999999999999999988762 2333332 11211 11223222234556677777899999
Q ss_pred EEcCcc
Q 013281 289 FIDEID 294 (446)
Q Consensus 289 ~IDEid 294 (446)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999984
No 417
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.09 E-value=0.0017 Score=68.76 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=60.7
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEec-hhh
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVG-SEL 261 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v~~-s~l 261 (446)
...++++++-.+++.+.++.++..+ ..-++++||+|+||||+..++.+.+.. .++.+-. .++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~~--------------~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRRP--------------HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhcC--------------CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 3457888877777888888877652 223789999999999999988876642 3333321 111
Q ss_pred h-----hhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCccc
Q 013281 262 I-----QKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDA 295 (446)
Q Consensus 262 ~-----~~~~g~~-~~~v~~lf~~a~~~~p~IL~IDEid~ 295 (446)
. +..+... ..........+....|.+|++.|+-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1 1111110 11233455566677999999999843
No 418
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.08 E-value=0.0021 Score=59.73 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=62.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh--C--CcEEEEechhhh-------------------------------hhh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST--S--ATFLRVVGSELI-------------------------------QKY 265 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~--~--~~~i~v~~s~l~-------------------------------~~~ 265 (446)
.+.+...+.|.||+|+|||||++.++... . .--+.+++..+. ..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 34566779999999999999999999862 1 111222221110 000
Q ss_pred cCCch--HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 266 LGDGP--KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 266 ~g~~~--~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
..... ...+-.+..+-...|.++++||--.-. +......+.++|..+.. .+..+|++|+.++
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~L~~~~~----~~~tiii~sh~~~ 165 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGL----------DIDALRLVAEVINKLRE----EGKSVLIITHYQR 165 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHHH----CCCEEEEEecCHH
Confidence 00111 111223444445578999999975332 55566777777776531 2356777877654
No 419
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.08 E-value=0.0021 Score=56.97 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh
Q 013281 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI 262 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~ 262 (446)
++|+|+||+|||++|+.++..+ +...+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 7899999999999999999987 5566667655443
No 420
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.0044 Score=57.21 Aligned_cols=106 Identities=23% Similarity=0.274 Sum_probs=60.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEechhhh-----------h---hhcC--------------Cc
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELI-----------Q---KYLG--------------DG 269 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~s~l~-----------~---~~~g--------------~~ 269 (446)
+.+...+.|.||+|+|||||++.++... ..--+.+++..+. + -+.+ ..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~L 109 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGL 109 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcC
Confidence 4556679999999999999999999632 1111112111100 0 0000 00
Q ss_pred --hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 270 --PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 270 --~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
-..-+-.+..|-...|.++++||-..-. +......+.+++.++.. .+..+|++|+.++
T Consensus 110 SgGe~qrv~la~al~~~p~vlllDEP~~~L----------D~~~~~~l~~~l~~~~~----~~~tiiivtH~~~ 169 (192)
T cd03232 110 SVEQRKRLTIGVELAAKPSILFLDEPTSGL----------DSQAAYNIVRFLKKLAD----SGQAILCTIHQPS 169 (192)
T ss_pred CHHHhHHHHHHHHHhcCCcEEEEeCCCcCC----------CHHHHHHHHHHHHHHHH----cCCEEEEEEcCCh
Confidence 0011122344445578999999975443 55667777778776532 2456777777654
No 421
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.06 E-value=0.0073 Score=54.57 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech
Q 013281 227 GVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s 259 (446)
.++++|+||+|||+++..++..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 37899999999999999998765 4556666654
No 422
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.06 E-value=0.00047 Score=61.72 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=24.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
++|.|||||||||+|+.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986654
No 423
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.05 E-value=0.0019 Score=64.58 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---C--CcEEEE-echhhhh------hhcCCchHHHHHHHHHHhhcCCeEEEEcC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---S--ATFLRV-VGSELIQ------KYLGDGPKLVRELFRVADDLSPSIVFIDE 292 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~--~~~i~v-~~s~l~~------~~~g~~~~~v~~lf~~a~~~~p~IL~IDE 292 (446)
..++++.|++|+|||+++++++... . ..++.+ +..++.- .+.....-...+++..+....|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5789999999999999999999863 1 122221 1122210 01111122356788888889999999999
Q ss_pred cc
Q 013281 293 ID 294 (446)
Q Consensus 293 id 294 (446)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 83
No 424
>PRK06547 hypothetical protein; Provisional
Probab=97.05 E-value=0.00067 Score=61.76 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
.+.-|++.|++|||||++|+.+++.++.+++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 455688999999999999999999988777654
No 425
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.04 E-value=0.0032 Score=57.59 Aligned_cols=107 Identities=16% Similarity=0.227 Sum_probs=61.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhh--------h---hhcC------------CchH----
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELI--------Q---KYLG------------DGPK---- 271 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~--------~---~~~g------------~~~~---- 271 (446)
.+.+...+.|.||+|+|||||++.++..... --+.+++..+. . .|+. ....
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 3455667999999999999999999985421 11111111000 0 0000 0000
Q ss_pred --------HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 272 --------LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 272 --------~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
..+-.+..|-...|.+|++||-..-. +......+.+++..+.. .+..+|++|+..+
T Consensus 102 ~~~LS~G~~qrl~la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 165 (182)
T cd03215 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGV----------DVGAKAEIYRLIRELAD----AGKAVLLISSELD 165 (182)
T ss_pred HhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCC----------CHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 01122444445578999999975432 55667777777776532 2456777777643
No 426
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.04 E-value=0.0013 Score=58.86 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=24.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
|.|+|+||||||||+++++.. +.+++.-.+..+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999998 7777654444444
No 427
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.04 E-value=0.002 Score=64.32 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=31.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
+.+...|+|+|+||||||++++.+|..++.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45677899999999999999999999999999843
No 428
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.03 E-value=0.0049 Score=57.67 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~ 247 (446)
..-++|+||+|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999874
No 429
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.03 E-value=0.0016 Score=67.81 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=62.3
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCce-EEEEcCCCCcHHHHHHHHHHHhCCcEEEE---------
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKG-VILYGEPGTGKTLLAKAVANSTSATFLRV--------- 256 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~-vLL~GppGtGKT~Laraia~~~~~~~i~v--------- 256 (446)
..+|++++......+.+.+.+.. |.| +|++||.|+||||...++.+.++.+...|
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 45788888888888889988877 344 77889999999999999999886543321
Q ss_pred echhhhhhhcCCch-HHHHHHHHHHhhcCCeEEEEcCcccc
Q 013281 257 VGSELIQKYLGDGP-KLVRELFRVADDLSPSIVFIDEIDAV 296 (446)
Q Consensus 257 ~~s~l~~~~~g~~~-~~v~~lf~~a~~~~p~IL~IDEid~l 296 (446)
..+.+.+-.+.... -.....++....+.|.||++.||-..
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 11122111111100 01123445555678999999999543
No 430
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.02 E-value=0.0011 Score=66.12 Aligned_cols=74 Identities=20% Similarity=0.411 Sum_probs=47.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEe-chhhhhh---h---------cCCchHHHHHHHHHHhhcCC
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVV-GSELIQK---Y---------LGDGPKLVRELFRVADDLSP 285 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~-~s~l~~~---~---------~g~~~~~v~~lf~~a~~~~p 285 (446)
-+....++++.||+|+||||++++++..... ..+.+. ..++.-. . .+...-...+++..+....|
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 3445678999999999999999999987642 122221 1111100 0 01112234567777778899
Q ss_pred eEEEEcCcc
Q 013281 286 SIVFIDEID 294 (446)
Q Consensus 286 ~IL~IDEid 294 (446)
.+|++||+-
T Consensus 220 d~ii~gE~r 228 (308)
T TIGR02788 220 DRIILGELR 228 (308)
T ss_pred CeEEEeccC
Confidence 999999984
No 431
>PRK06696 uridine kinase; Validated
Probab=97.02 E-value=0.0016 Score=61.75 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 013281 197 DAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (446)
Q Consensus 197 ~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l 261 (446)
..++++|-+.+... ....+.-|.+.|++|+||||+|+.|+..+ +.+++.++...+
T Consensus 4 ~~~~~~la~~~~~~----------~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 4 KQLIKELAEHILTL----------NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred HHHHHHHHHHHHHh----------CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 44566666655431 12235568899999999999999999988 566666655444
No 432
>PLN02200 adenylate kinase family protein
Probab=97.01 E-value=0.00082 Score=64.28 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=32.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
+.|..++|.|+|||||||+|+.+|+.++.. .++.++++...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~ 81 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRRE 81 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHH
Confidence 445678999999999999999999998764 56667776543
No 433
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0095 Score=60.89 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhh-------hhh
Q 013281 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELI-------QKY 265 (446)
Q Consensus 196 l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~-------~~~ 265 (446)
....++.+.+.+...+..+..+ ...++.++|.||+|+||||++..+|..+. ..+..+++.... ..|
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~y 291 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY 291 (436)
T ss_pred HHHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH
Confidence 3556666666655433332211 12356799999999999999999998652 344444442211 111
Q ss_pred ---------cCCchHHHHHHHHHHhh-cCCeEEEEcCcccc
Q 013281 266 ---------LGDGPKLVRELFRVADD-LSPSIVFIDEIDAV 296 (446)
Q Consensus 266 ---------~g~~~~~v~~lf~~a~~-~~p~IL~IDEid~l 296 (446)
....+..+...+..+.. ....+||||-....
T Consensus 292 ae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 292 VKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 12334445555555443 23579999987554
No 434
>PRK10436 hypothetical protein; Provisional
Probab=97.01 E-value=0.0017 Score=68.19 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=61.1
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEe-chhh-
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVV-GSEL- 261 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v~-~s~l- 261 (446)
..++++++-.+.+++.+++.+..+ ...+|++||+|+||||+..++.++... +++.+- ..++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~~--------------~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQP--------------QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHhc--------------CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 357888887777888888877652 345889999999999999887776643 333321 1111
Q ss_pred ----hhhhcCC-chHHHHHHHHHHhhcCCeEEEEcCcc
Q 013281 262 ----IQKYLGD-GPKLVRELFRVADDLSPSIVFIDEID 294 (446)
Q Consensus 262 ----~~~~~g~-~~~~v~~lf~~a~~~~p~IL~IDEid 294 (446)
.+..++. ........+..+....|.+|+|.||-
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1111111 11224556666777799999999984
No 435
>PLN02674 adenylate kinase
Probab=97.01 E-value=0.0015 Score=62.82 Aligned_cols=39 Identities=23% Similarity=0.493 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
++..++|.||||+||||+|+.+|+.++.+. ++..+++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 345799999999999999999999988554 455555543
No 436
>PRK13764 ATPase; Provisional
Probab=97.01 E-value=0.00086 Score=72.14 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=42.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEE-echhh-----hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcc
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRV-VGSEL-----IQKYLGDGPKLVRELFRVADDLSPSIVFIDEID 294 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v-~~s~l-----~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid 294 (446)
...++|++|||||||||++++++..+.. .+..+ +..++ ...|.. ...........+....|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 3568999999999999999999987642 22122 11111 112210 00111222333345689999999975
Q ss_pred c
Q 013281 295 A 295 (446)
Q Consensus 295 ~ 295 (446)
.
T Consensus 335 d 335 (602)
T PRK13764 335 K 335 (602)
T ss_pred C
Confidence 3
No 437
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.01 Score=61.25 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+..++|.||+|+||||++..+|...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999754
No 438
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.00 E-value=0.00076 Score=61.35 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
...|+|.|++|+|||++++.+|+.++.+|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999988876543
No 439
>PF13245 AAA_19: Part of AAA domain
Probab=97.00 E-value=0.0012 Score=51.60 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHh
Q 013281 226 KGVILYGEPGTGKT-LLAKAVANST 249 (446)
Q Consensus 226 ~~vLL~GppGtGKT-~Laraia~~~ 249 (446)
.-+++.|||||||| ++++.++...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34666999999999 6666666655
No 440
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.99 E-value=0.0015 Score=59.90 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=43.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-------------CCcEEEEechhhh----hhh---cC-----------------
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST-------------SATFLRVVGSELI----QKY---LG----------------- 267 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~-------------~~~~i~v~~s~l~----~~~---~g----------------- 267 (446)
..-++|+||||+|||+++..++... +..+++++...-. ..+ ..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~ 111 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWG 111 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccc
Confidence 3458999999999999999888754 2356666543211 100 00
Q ss_pred ------------CchHHHHHHHHHHhh-cCCeEEEEcCccccccc
Q 013281 268 ------------DGPKLVRELFRVADD-LSPSIVFIDEIDAVGTK 299 (446)
Q Consensus 268 ------------~~~~~v~~lf~~a~~-~~p~IL~IDEid~l~~~ 299 (446)
.....+..+.+.+.. ..+.+|+||-+..+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 112 CIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred cceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012334556666666 57899999999999754
No 441
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.99 E-value=0.00082 Score=60.66 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
..++|+|++|||||++++.+|+.++.+|+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3589999999999999999999999988754
No 442
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0015 Score=62.40 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
...-+.|.||+||||||+.+.|-+-.
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhccc
Confidence 33448889999999999999998743
No 443
>PRK13946 shikimate kinase; Provisional
Probab=96.97 E-value=0.00084 Score=61.65 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
++.|+|.|.+|||||++++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 457999999999999999999999999987655
No 444
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.96 E-value=0.0076 Score=64.31 Aligned_cols=110 Identities=22% Similarity=0.276 Sum_probs=64.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEechhhhhh--------------hc------------C---
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELIQK--------------YL------------G--- 267 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~s~l~~~--------------~~------------g--- 267 (446)
|+.....+||+|+||||||+++..++... +-+.++++..+-... +. .
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 56777889999999999999999876532 445666655432110 00 0
Q ss_pred -------CchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 268 -------DGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 268 -------~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
+....+..+........+..|+||-+..+...- .........+..++..+. ..++.+|++++.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-----d~~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~ 176 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF-----SNEAVVRRELRRLFAWLK----QKGVTAVITGER 176 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc-----cCHHHHHHHHHHHHHHHH----hCCCEEEEEECC
Confidence 012223344445556678999999998764211 111223445556655543 235566666654
No 445
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.00075 Score=59.99 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
+-+.|||||||||+|+.+|+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999875
No 446
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.96 E-value=0.0022 Score=61.74 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 013281 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l 261 (446)
|+|+|+||+||||+|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 355666655444
No 447
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.96 E-value=0.0084 Score=55.75 Aligned_cols=102 Identities=22% Similarity=0.351 Sum_probs=56.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh-------hhhh------------cC-CchHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL-------IQKY------------LG-DGPKLVRELFRVAD 281 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l-------~~~~------------~g-~~~~~v~~lf~~a~ 281 (446)
|+-++|.||+|+||||.+--+|..+ +..+.-+++..+ +..| .. +......+.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4668999999999999988888754 333333333211 1111 01 12233445555555
Q ss_pred hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
...-.+|+||-.... ..+.+....+..++..+. ...+.++++++.
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~~----~~~~~LVlsa~~ 125 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEALN----PDEVHLVLSATM 125 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHHS----SSEEEEEEEGGG
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhcC----CccceEEEeccc
Confidence 545579999987443 223444555666665542 334566665543
No 448
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.95 E-value=0.002 Score=69.44 Aligned_cols=95 Identities=19% Similarity=0.146 Sum_probs=61.6
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEe------
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVV------ 257 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v~------ 257 (446)
..++++++-.+.+.+.+.+++..+ ...||++||+|+||||+..++.+.++. +++.+-
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~~--------------~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHKP--------------QGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 356788877777888888877652 334889999999999999888887643 333221
Q ss_pred chhhhhhhcCC-chHHHHHHHHHHhhcCCeEEEEcCccc
Q 013281 258 GSELIQKYLGD-GPKLVRELFRVADDLSPSIVFIDEIDA 295 (446)
Q Consensus 258 ~s~l~~~~~g~-~~~~v~~lf~~a~~~~p~IL~IDEid~ 295 (446)
...+.+..+.. ........+..+....|.+|++.||-.
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 11111111111 112245566677778999999999953
No 449
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95 E-value=0.0019 Score=60.20 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...+.|.||+|+|||||++.++...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556679999999999999999999853
No 450
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.95 E-value=0.0031 Score=60.90 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...+.|.||+|+|||||++.++...
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566779999999999999999999753
No 451
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.94 E-value=0.00086 Score=61.20 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
-++|.|||||||||+++.++..++.. .++..+++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~~ 39 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLLR 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHHH
Confidence 58899999999999999999998754 455555443
No 452
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.94 E-value=0.0033 Score=56.56 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHh
Q 013281 226 KGVILYGEPGTGKTL-LAKAVANST 249 (446)
Q Consensus 226 ~~vLL~GppGtGKT~-Laraia~~~ 249 (446)
+.+++.||+|||||+ ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555544
No 453
>PRK14528 adenylate kinase; Provisional
Probab=96.93 E-value=0.00089 Score=61.67 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
.+++.||||+|||++|+.++..++.+++. ..+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 58999999999999999999999877654 44444
No 454
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.0045 Score=56.38 Aligned_cols=107 Identities=22% Similarity=0.393 Sum_probs=62.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhh---------hhh-----------hcC-----------C
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL---------IQK-----------YLG-----------D 268 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l---------~~~-----------~~g-----------~ 268 (446)
+.+...+.|.||+|+|||||+++++..... --+.+++..+ ... +.+ .
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 445567889999999999999999975431 1111111100 000 000 0
Q ss_pred chHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 269 GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 269 ~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
+-...+-.+..|-...|.++++||-..- -+......+.+++.++.. ..+..+|++|+..+
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~----------LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~ 162 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSA----------LDPITRREVRALLKSLQA---QLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 0112233445555668899999997543 256667777888876532 22356777776644
No 455
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.93 E-value=0.0025 Score=65.78 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.+.|.|.|++|||||||++++|+..+..++.--+.+...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 456999999999999999999999988776655555443
No 456
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.93 E-value=0.0017 Score=64.96 Aligned_cols=60 Identities=18% Similarity=0.369 Sum_probs=44.3
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCC-ceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEech
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP-KGVILYGEPGTGKTLLAKAVANSTSA-TFLRVVGS 259 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~-~~vLL~GppGtGKT~Laraia~~~~~-~~i~v~~s 259 (446)
++.|+++.+.++-+.+...-. |.... +-++|.||+|+|||+|++.+.+-+.. +++.+..+
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~--------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~ 123 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQ--------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGC 123 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHh--------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCC
Confidence 689999999999998876322 33333 35788999999999999999987753 44444333
No 457
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.92 E-value=0.0093 Score=55.45 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
-++|+||+|+|||+|+++++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
No 458
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0012 Score=61.11 Aligned_cols=23 Identities=48% Similarity=0.741 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 013281 228 VILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~ 250 (446)
++|+|+||+|||++|+.+|+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999874
No 459
>PRK14527 adenylate kinase; Provisional
Probab=96.92 E-value=0.00083 Score=61.99 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.+.-++++||||+||||+|+.+++.++...+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 45679999999999999999999998765443
No 460
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.91 E-value=0.00073 Score=57.31 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 013281 228 VILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~ 249 (446)
|+|.|+|||||||+|+.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 461
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.91 E-value=0.0011 Score=66.96 Aligned_cols=72 Identities=19% Similarity=0.355 Sum_probs=46.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEE-echhhhh------------hhcCCchHHHHHHHHHHhhcCCeE
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRV-VGSELIQ------------KYLGDGPKLVRELFRVADDLSPSI 287 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v-~~s~l~~------------~~~g~~~~~v~~lf~~a~~~~p~I 287 (446)
....++++.||+|+||||++++++..... .++.+ +..++.- ...+...-....++..+....|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 34678999999999999999999987643 22221 1111110 001111223456778888889999
Q ss_pred EEEcCcc
Q 013281 288 VFIDEID 294 (446)
Q Consensus 288 L~IDEid 294 (446)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999983
No 462
>PRK10867 signal recognition particle protein; Provisional
Probab=96.91 E-value=0.0091 Score=62.12 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEechhhhh----------h------hc----CCchHHHHHHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELIQ----------K------YL----GDGPKLVRELFR 278 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~s~l~~----------~------~~----g~~~~~v~~lf~ 278 (446)
.+|.-++++|++|+||||++-.+|..+ +..+..+++..+.. . +. ............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346779999999999999887777643 55566665542111 0 10 122333345555
Q ss_pred HHhhcCCeEEEEcCcccc
Q 013281 279 VADDLSPSIVFIDEIDAV 296 (446)
Q Consensus 279 ~a~~~~p~IL~IDEid~l 296 (446)
.+......+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666656789999988665
No 463
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.91 E-value=0.0014 Score=57.98 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=29.0
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhc
Q 013281 230 LYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (446)
Q Consensus 230 L~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~ 266 (446)
|.||||+|||++|+.||...+. ..++..+++...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999864 5677777776554
No 464
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.90 E-value=0.0024 Score=59.28 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999999853
No 465
>PRK02496 adk adenylate kinase; Provisional
Probab=96.89 E-value=0.00098 Score=61.01 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.++|.||||+|||++|+.++..++.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999876544
No 466
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.89 E-value=0.0025 Score=63.99 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=33.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
..++|.|+||||||||++.+++..+.+++.-.+.++....
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~ 202 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEK 202 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHh
Confidence 4699999999999999999999999988776666655543
No 467
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.89 E-value=0.0014 Score=61.32 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=17.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
-.++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38899999999997766666555
No 468
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.89 E-value=0.0051 Score=57.26 Aligned_cols=127 Identities=24% Similarity=0.349 Sum_probs=71.6
Q ss_pred CCCchhhhhhC--CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech----hhhh------------------
Q 013281 211 LTHPELYEDIG--IKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS----ELIQ------------------ 263 (446)
Q Consensus 211 l~~~~~~~~~g--~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s----~l~~------------------ 263 (446)
..+.|+-+++| ++.+.-+++.|+.|||||.|++.++.-. +....+++.. +++.
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 45666666775 4455558899999999999999888622 2222222111 0000
Q ss_pred -------hhc----CCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 264 -------KYL----GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 264 -------~~~----g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
..+ ......+..+.+..+.+...||+||-+..+.... -...++++++.+..+...+.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gKvI 161 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGKVI 161 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCCEE
Confidence 001 1122334455555555566899999999886321 1234555555555554445543
Q ss_pred EEEEeCCCCCCChhhcC
Q 013281 333 VILATNRIESLDPALLR 349 (446)
Q Consensus 333 vI~atn~~~~ld~al~r 349 (446)
|+ |-.|..++.+.+.
T Consensus 162 -il-Tvhp~~l~e~~~~ 176 (235)
T COG2874 162 -IL-TVHPSALDEDVLT 176 (235)
T ss_pred -EE-EeChhhcCHHHHH
Confidence 33 3345677777654
No 469
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.89 E-value=0.00092 Score=62.69 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
|+|+||||+||||+|+.+|..++.+.+. ..+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999998876554 445544
No 470
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.89 E-value=0.0015 Score=66.29 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
-+++.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999988
No 471
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.89 E-value=0.0027 Score=61.97 Aligned_cols=72 Identities=21% Similarity=0.417 Sum_probs=49.5
Q ss_pred Cce-EEEEcCCCCcHHHHHHHHHHHhCC----cEEEE---------echhh-hhhhcCCchHHHHHHHHHHhhcCCeEEE
Q 013281 225 PKG-VILYGEPGTGKTLLAKAVANSTSA----TFLRV---------VGSEL-IQKYLGDGPKLVRELFRVADDLSPSIVF 289 (446)
Q Consensus 225 ~~~-vLL~GppGtGKT~Laraia~~~~~----~~i~v---------~~s~l-~~~~~g~~~~~v~~lf~~a~~~~p~IL~ 289 (446)
++| ||++||+||||||..-++-...+. +.+.+ +-..+ .+..+|.-.......+..|....|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 344 888999999999998888877653 22222 22222 2345666655566667777777899999
Q ss_pred EcCcccc
Q 013281 290 IDEIDAV 296 (446)
Q Consensus 290 IDEid~l 296 (446)
+-|+-.+
T Consensus 204 vGEmRD~ 210 (353)
T COG2805 204 VGEMRDL 210 (353)
T ss_pred EeccccH
Confidence 9998544
No 472
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.87 E-value=0.0047 Score=58.04 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=24.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
.+.+...+.|.||+|+|||||++.++..
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3456667999999999999999999974
No 473
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.87 E-value=0.0032 Score=62.16 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
.-++|.|+|||||||+|+.+++.+. .++.++...+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 4588999999999999999999983 33444544443
No 474
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.86 E-value=0.0038 Score=59.28 Aligned_cols=55 Identities=33% Similarity=0.548 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 273 VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 273 v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
.|-.|..|....|.||+|||+=+.+ +..+++.-...++++- ..+..+|++|...+
T Consensus 154 aRLaFsia~~~~pdILllDEvlavG----------D~~F~~K~~~rl~e~~----~~~~tiv~VSHd~~ 208 (249)
T COG1134 154 ARLAFSVATHVEPDILLLDEVLAVG----------DAAFQEKCLERLNELV----EKNKTIVLVSHDLG 208 (249)
T ss_pred HHHHHhhhhhcCCCEEEEehhhhcC----------CHHHHHHHHHHHHHHH----HcCCEEEEEECCHH
Confidence 4567888888889999999996664 5566666666666542 12356777776544
No 475
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.86 E-value=0.012 Score=57.54 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=27.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s 259 (446)
..++.++|+||+|+||||++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345678899999999999999998765 4445445443
No 476
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.86 E-value=0.0023 Score=55.62 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=25.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSAT 252 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~ 252 (446)
.+...++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345579999999999999999999998753
No 477
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.85 E-value=0.0041 Score=58.14 Aligned_cols=23 Identities=52% Similarity=0.556 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
-+++.||.|||||+||-+.|-+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998654
No 478
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.85 E-value=0.0091 Score=54.73 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=35.3
Q ss_pred HHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 276 lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
.+..|--++|.+|+-||-- ..-+++....++.+++++.. .+..|++||...+
T Consensus 147 aIARAiV~~P~vLlADEPT----------GNLDp~~s~~im~lfeeinr----~GtTVl~ATHd~~ 198 (223)
T COG2884 147 AIARAIVNQPAVLLADEPT----------GNLDPDLSWEIMRLFEEINR----LGTTVLMATHDLE 198 (223)
T ss_pred HHHHHHccCCCeEeecCCC----------CCCChHHHHHHHHHHHHHhh----cCcEEEEEeccHH
Confidence 3445556789999999952 12266777788888887643 3567888886543
No 479
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.84 E-value=0.0025 Score=59.24 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.|++|+|||||.+.++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556679999999999999999999754
No 480
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.83 E-value=0.0011 Score=62.41 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.|+++||||+||||+|+.+|..++..++. ..+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 38999999999999999999999866554 444443
No 481
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.83 E-value=0.0045 Score=59.22 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 013281 228 VILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~ 248 (446)
.+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999988864
No 482
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.83 E-value=0.011 Score=55.94 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~ 247 (446)
..+-++|+||.|+|||++.+.++-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 344689999999999999998875
No 483
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.82 E-value=0.009 Score=66.33 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=41.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---C--CcEEEEechh----hhhhhcCCchHHHHHHHHHHh----------hcCCe
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST---S--ATFLRVVGSE----LIQKYLGDGPKLVRELFRVAD----------DLSPS 286 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~---~--~~~i~v~~s~----l~~~~~g~~~~~v~~lf~~a~----------~~~p~ 286 (446)
+-++|.|+||||||++++++...+ + .+++-+..+. -+....|.....+..++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 368999999999999999987754 3 2333322221 112223333334444443211 12346
Q ss_pred EEEEcCcccc
Q 013281 287 IVFIDEIDAV 296 (446)
Q Consensus 287 IL~IDEid~l 296 (446)
+|+|||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999888
No 484
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.81 E-value=0.0066 Score=65.76 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+++...+.|.|++|+|||||++.++...
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455669999999999999999999854
No 485
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.81 E-value=0.0034 Score=58.15 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...+.|.||+|+|||||++.++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556679999999999999999999853
No 486
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.80 E-value=0.0052 Score=65.59 Aligned_cols=108 Identities=22% Similarity=0.284 Sum_probs=63.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh------cC----------------------Cc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY------LG----------------------DG 269 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~------~g----------------------~~ 269 (446)
|+.....++|+|+||||||+++..++... +.+.++++..+-.... +| ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56777789999999999999999887643 5566666543211100 00 01
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 270 ~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
...+..+........+.+|+||-+..+.... ......+.+..++..+. ..++.+|++..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~------~~~~~~~~l~~l~~~~k----~~~~t~l~t~~ 407 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG------SLNEFRQFVIRLTDYLK----SEEITGLFTNL 407 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC------CHHHHHHHHHHHHHHHH----hCCCeEEEEec
Confidence 1223334444555678899999998875321 12233344444444433 34566666653
No 487
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.002 Score=65.49 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||.+.||...
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 4455668899999999999999999853
No 488
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.80 E-value=0.0087 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~ 250 (446)
-.+|+||.|+|||.+..||+-.++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 577999999999999999976543
No 489
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.059 Score=51.50 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=100.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-Eec-hhhhhhhcC--CchHHHHHHHHHHhhcCC----e-EE--EEc
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLR-VVG-SELIQKYLG--DGPKLVRELFRVADDLSP----S-IV--FID 291 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~-v~~-s~l~~~~~g--~~~~~v~~lf~~a~~~~p----~-IL--~ID 291 (446)
..|.-+||-|+||+|||++|.-+|+.++..-+. .+. -+++.+.++ ..+-.-...|..-+...+ . || |.|
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d 166 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED 166 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence 346678999999999999999999999975432 211 122222222 112222233333222110 0 11 223
Q ss_pred CcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHH
Q 013281 292 EIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT-NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRI 370 (446)
Q Consensus 292 Eid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at-n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~I 370 (446)
.+..+ ...+...+...+++- .++ ||=.. =-|..+++..+...-| .+.+-.+|++..+.=
T Consensus 167 qa~~V-----------~~GI~~VI~RAi~eG------~~l-IIEGvHlVPg~i~~~~~~~n~~--~~~l~i~dee~Hr~R 226 (299)
T COG2074 167 QASAV-----------MVGIEAVIERAIEEG------EDL-IIEGVHLVPGLIKEEALGNNVF--MFMLYIADEELHRER 226 (299)
T ss_pred HhHHH-----------HHHHHHHHHHHHhcC------cce-EEEeeeeccccccHhhhccceE--EEEEEeCCHHHHHHH
Confidence 33222 222333444444321 223 33333 3366777766632233 455666777777766
Q ss_pred HHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 013281 371 FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 371 l~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~ 436 (446)
|-........... ....+... .+++.+-......|-..+-+.|..+|+..++.+++.-.
T Consensus 227 F~~R~~~t~~~rp--~~Ryl~yf-----~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i 285 (299)
T COG2074 227 FYDRIRYTHASRP--GGRYLEYF-----KEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDI 285 (299)
T ss_pred HHHHHHHHhccCc--hhHHHHHH-----HHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHHHH
Confidence 6655544322222 22333322 35667766677777777888999999999998887643
No 490
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.79 E-value=0.029 Score=56.20 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
.+.-++|.||+|+||||++..+|..+ +..+..+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45678899999999999999999865 334444443
No 491
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.78 E-value=0.01 Score=54.19 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhc
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~ 266 (446)
+.|+|++|+||||+++.+++ ++.++ +++..+.....
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~--i~~D~~~~~~~ 37 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV--IDADKIAHEVY 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE--EecCHHHHhhh
Confidence 68999999999999999998 67655 55556655443
No 492
>PF13479 AAA_24: AAA domain
Probab=96.78 E-value=0.0028 Score=59.69 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=38.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc-EEEEechh--hhh----h-hcCCchHHHHHHHHHH--hhcCCeEEEEcCcc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSAT-FLRVVGSE--LIQ----K-YLGDGPKLVRELFRVA--DDLSPSIVFIDEID 294 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~-~i~v~~s~--l~~----~-~~g~~~~~v~~lf~~a--~~~~p~IL~IDEid 294 (446)
+-.++|||+||+|||++|..+ +.+ |+-+.... +.. . ..-.+...+.+.+..+ ......+|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 446999999999999999988 332 22222221 100 0 0001233344444332 23456799999887
Q ss_pred cc
Q 013281 295 AV 296 (446)
Q Consensus 295 ~l 296 (446)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 493
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.00093 Score=60.10 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
.++++|.|||||||+++.++ .++..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 8887776543
No 494
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.012 Score=55.87 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhc
Q 013281 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALL 348 (446)
Q Consensus 275 ~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~ 348 (446)
-+|..|--..|.+|++||--.= -+-.....+++.|.++.. ..+...+|+.|...+.++|-+-
T Consensus 180 vLiaRALv~~P~LLiLDEP~~G----------LDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQG----------LDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred HHHHHHHhcCCCEEEecCcccc----------CChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccc
Confidence 4566666678999999996321 133333456666655532 2345668888888888876653
No 495
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.0069 Score=59.32 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=22.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
++...-+-|+||+|+|||||.|.||.-
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGL 51 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGL 51 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhCc
Confidence 344556899999999999999999973
No 496
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.77 E-value=0.0056 Score=56.99 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=31.5
Q ss_pred cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 283 LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 283 ~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
..|.++++||...-. +......+.++|..+-. ...+...||++|+..+.+.
T Consensus 130 ~~p~illlDEP~~gl----------D~~~~~~~~~~l~~~~~-~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 130 MESPFRCLDEFDVFM----------DMVNRKISTDLLVKEAK-KQPGRQFIFITPQDISGLA 180 (198)
T ss_pred cCCCEEEecCccccc----------CHHHHHHHHHHHHHHHh-cCCCcEEEEEECCcccccc
Confidence 578999999986543 44455666666655421 0013456788887766543
No 497
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.76 E-value=0.0039 Score=57.96 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=31.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEechhhhh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSELIQ 263 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~-~~~~i~v~~s~l~~ 263 (446)
..|.-+++.|+||+|||+++..+...+ ...++.++..++..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 456779999999999999999999988 77888898877654
No 498
>PRK14526 adenylate kinase; Provisional
Probab=96.75 E-value=0.0019 Score=60.79 Aligned_cols=35 Identities=26% Similarity=0.529 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.++|+|||||||||+++.+|..++.++ ++..+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~llr 36 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLFR 36 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHHH
Confidence 388999999999999999999987655 44444443
No 499
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.75 E-value=0.092 Score=52.37 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=31.2
Q ss_pred EEEcCCCCHHHHHHHHHHHHccCCCCC---cc-CHHHHHHhCCCCcHHHHH
Q 013281 356 KIEFPLPDIKTRRRIFQIHTSRMTLAD---DV-NLEEFVMTKDEFSGADIK 402 (446)
Q Consensus 356 ~i~~~~P~~~er~~Il~~~~~~~~~~~---~~-~l~~la~~t~g~s~~di~ 402 (446)
.|+++..+.+|-+.+++.+....-+.. +. -.+.+...+. .+++++.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~-GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN-GNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-CCHHHhc
Confidence 688999999999999999987655442 11 2334444444 4777764
No 500
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.74 E-value=0.0075 Score=59.34 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----C-CcEEEEech
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST----S-ATFLRVVGS 259 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~----~-~~~i~v~~s 259 (446)
.+..++|+||+|+||||++..+|..+ + ..+..+++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45679999999999999999998754 3 455555544
Done!