Query 013281
Match_columns 446
No_of_seqs 534 out of 3155
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_I 26S protease regulatory 100.0 1.5E-92 5.3E-97 717.9 35.8 437 1-446 1-437 (437)
2 4b4t_J 26S protease regulatory 100.0 1.3E-69 4.6E-74 548.6 37.4 382 58-439 11-396 (405)
3 4b4t_K 26S protease regulatory 100.0 7.6E-68 2.6E-72 542.6 37.5 384 48-435 33-417 (428)
4 4b4t_L 26S protease subunit RP 100.0 1.1E-66 3.9E-71 534.7 37.5 369 63-437 59-427 (437)
5 4b4t_M 26S protease regulatory 100.0 1.7E-65 5.9E-70 525.5 33.7 354 91-446 55-434 (434)
6 4b4t_H 26S protease regulatory 100.0 9.3E-63 3.2E-67 504.3 32.9 315 123-437 141-455 (467)
7 3cf2_A TER ATPase, transitiona 100.0 2.3E-46 7.7E-51 408.6 11.7 253 184-436 470-747 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.2E-43 4.1E-48 387.2 21.0 249 183-434 196-461 (806)
9 3h4m_A Proteasome-activating n 100.0 1.8E-39 6.3E-44 316.2 27.5 261 179-439 5-265 (285)
10 3cf0_A Transitional endoplasmi 100.0 5.3E-40 1.8E-44 323.9 22.3 251 183-433 7-282 (301)
11 1lv7_A FTSH; alpha/beta domain 100.0 3.4E-38 1.2E-42 303.2 28.2 253 181-434 2-254 (257)
12 2ce7_A Cell division protein F 100.0 1E-38 3.6E-43 331.7 26.4 249 185-434 10-258 (476)
13 2x8a_A Nuclear valosin-contain 100.0 2.5E-39 8.5E-44 315.1 19.7 247 185-434 4-266 (274)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.6E-38 2.9E-42 311.1 25.2 227 183-415 4-233 (322)
15 3eie_A Vacuolar protein sortin 100.0 1.2E-37 4.2E-42 309.7 22.0 247 182-434 9-300 (322)
16 2qp9_X Vacuolar protein sortin 100.0 1.3E-36 4.5E-41 306.4 23.5 228 182-415 42-271 (355)
17 2dhr_A FTSH; AAA+ protein, hex 100.0 1.7E-36 5.7E-41 316.9 23.2 249 186-435 26-274 (499)
18 3hu3_A Transitional endoplasmi 100.0 3.2E-36 1.1E-40 315.0 24.9 249 185-436 198-463 (489)
19 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.6E-36 5.5E-41 291.1 19.4 250 186-436 1-253 (262)
20 1ixz_A ATP-dependent metallopr 100.0 6E-35 2E-39 280.1 26.3 246 183-429 8-253 (254)
21 2zan_A Vacuolar protein sortin 100.0 2.1E-35 7.2E-40 306.1 21.3 228 182-415 125-355 (444)
22 1iy2_A ATP-dependent metallopr 100.0 1.4E-33 4.7E-38 274.5 27.4 245 184-429 33-277 (278)
23 3b9p_A CG5977-PA, isoform A; A 100.0 7.2E-34 2.4E-38 278.4 21.7 249 181-432 11-272 (297)
24 3d8b_A Fidgetin-like protein 1 100.0 2.8E-33 9.7E-38 282.3 23.5 250 181-436 74-338 (357)
25 3vfd_A Spastin; ATPase, microt 100.0 7.3E-33 2.5E-37 282.3 24.8 248 180-433 104-366 (389)
26 2r62_A Cell division protease 100.0 2.8E-36 9.6E-41 291.2 -0.7 251 184-435 4-256 (268)
27 1ypw_A Transitional endoplasmi 100.0 8E-36 2.8E-40 329.5 -4.2 233 184-416 470-702 (806)
28 1ypw_A Transitional endoplasmi 100.0 1.4E-29 4.9E-34 279.6 23.0 247 184-433 197-460 (806)
29 3t15_A Ribulose bisphosphate c 99.9 8E-27 2.7E-31 228.9 13.5 177 221-403 32-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 4.3E-24 1.5E-28 221.9 10.1 110 185-303 31-145 (456)
31 3syl_A Protein CBBX; photosynt 99.9 6.9E-23 2.3E-27 201.1 17.9 222 192-426 32-280 (309)
32 3pfi_A Holliday junction ATP-d 99.9 7.6E-22 2.6E-26 196.4 24.4 222 181-432 19-254 (338)
33 3uk6_A RUVB-like 2; hexameric 99.9 5.3E-22 1.8E-26 199.5 20.5 220 186-432 39-330 (368)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 3.3E-21 1.1E-25 190.2 20.4 222 182-432 3-238 (324)
35 3m6a_A ATP-dependent protease 99.9 6.3E-23 2.2E-27 217.4 3.2 226 189-432 79-341 (543)
36 2chg_A Replication factor C sm 99.8 1.6E-19 5.5E-24 166.5 22.4 206 181-430 7-224 (226)
37 1ofh_A ATP-dependent HSL prote 99.8 1.1E-20 3.8E-25 184.7 14.8 237 192-432 16-299 (310)
38 2v1u_A Cell division control p 99.8 1.3E-19 4.5E-24 182.1 22.1 225 189-434 17-278 (387)
39 3pvs_A Replication-associated 99.8 1.3E-19 4.5E-24 187.4 18.0 208 182-431 17-243 (447)
40 3hws_A ATP-dependent CLP prote 99.8 2E-19 6.7E-24 181.2 17.7 234 193-428 17-345 (363)
41 1g8p_A Magnesium-chelatase 38 99.8 4E-19 1.4E-23 177.0 19.7 227 183-438 16-328 (350)
42 1d2n_A N-ethylmaleimide-sensit 99.8 2.3E-19 7.8E-24 173.3 15.2 221 191-431 33-263 (272)
43 3u61_B DNA polymerase accessor 99.8 3.7E-19 1.3E-23 175.9 17.1 208 179-430 14-235 (324)
44 2r44_A Uncharacterized protein 99.8 6.3E-19 2.2E-23 174.9 18.3 217 187-436 23-301 (331)
45 1njg_A DNA polymerase III subu 99.8 3.1E-18 1.1E-22 159.6 20.8 207 181-429 13-248 (250)
46 1sxj_D Activator 1 41 kDa subu 99.8 1.6E-18 5.3E-23 172.7 19.9 213 179-430 25-261 (353)
47 1g41_A Heat shock protein HSLU 99.8 1.3E-20 4.5E-25 193.4 4.9 170 191-372 15-189 (444)
48 2z4s_A Chromosomal replication 99.8 1.3E-18 4.3E-23 179.9 18.3 219 186-433 100-333 (440)
49 1l8q_A Chromosomal replication 99.8 2E-18 7E-23 170.8 18.3 218 186-432 6-240 (324)
50 3bos_A Putative DNA replicatio 99.8 3.3E-18 1.1E-22 160.4 17.8 205 187-430 24-241 (242)
51 2qby_B CDC6 homolog 3, cell di 99.8 3.8E-18 1.3E-22 171.8 19.4 211 191-433 20-271 (384)
52 1sxj_A Activator 1 95 kDa subu 99.8 7E-19 2.4E-23 185.4 14.4 227 179-430 27-272 (516)
53 1in4_A RUVB, holliday junction 99.8 4.6E-17 1.6E-21 162.2 24.9 221 183-433 17-251 (334)
54 4fcw_A Chaperone protein CLPB; 99.8 2.8E-18 9.5E-23 168.2 15.0 206 192-414 18-280 (311)
55 2chq_A Replication factor C sm 99.8 5E-18 1.7E-22 166.4 16.4 209 180-428 6-222 (319)
56 2qby_A CDC6 homolog 1, cell di 99.8 2.3E-17 8E-22 165.4 21.7 223 188-433 17-273 (386)
57 3pxg_A Negative regulator of g 99.8 2.5E-18 8.6E-23 179.1 14.9 210 183-433 172-407 (468)
58 1r6b_X CLPA protein; AAA+, N-t 99.8 1.1E-17 3.7E-22 184.1 19.9 224 185-433 180-434 (758)
59 1jbk_A CLPB protein; beta barr 99.8 1.9E-18 6.6E-23 155.6 11.4 161 185-371 16-194 (195)
60 1um8_A ATP-dependent CLP prote 99.8 5.3E-18 1.8E-22 171.4 15.3 238 192-431 22-364 (376)
61 3te6_A Regulatory protein SIR3 99.8 2E-18 6.7E-23 170.4 11.2 214 193-433 22-316 (318)
62 1iqp_A RFCS; clamp loader, ext 99.8 5.4E-17 1.8E-21 159.5 21.1 196 179-409 13-216 (327)
63 1sxj_B Activator 1 37 kDa subu 99.8 5E-17 1.7E-21 159.5 20.4 207 180-430 10-229 (323)
64 1fnn_A CDC6P, cell division co 99.7 4.5E-17 1.5E-21 164.0 20.3 221 190-433 16-275 (389)
65 3pxi_A Negative regulator of g 99.7 2E-17 6.9E-22 182.0 19.1 199 191-414 491-726 (758)
66 1jr3_A DNA polymerase III subu 99.7 4.8E-17 1.6E-21 163.1 19.3 206 181-428 6-240 (373)
67 3pxi_A Negative regulator of g 99.7 2.3E-17 7.9E-22 181.5 16.0 192 183-415 172-388 (758)
68 2bjv_A PSP operon transcriptio 99.7 4.1E-17 1.4E-21 156.8 13.9 208 188-425 3-250 (265)
69 1r6b_X CLPA protein; AAA+, N-t 99.7 6.3E-17 2.2E-21 178.0 15.9 202 192-414 459-717 (758)
70 2p65_A Hypothetical protein PF 99.7 3.4E-17 1.2E-21 147.1 11.4 153 186-363 17-187 (187)
71 1sxj_E Activator 1 40 kDa subu 99.7 3.8E-16 1.3E-20 155.8 20.0 196 180-412 3-244 (354)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 2E-17 6.7E-22 173.0 10.6 205 192-426 23-280 (500)
73 1ojl_A Transcriptional regulat 99.7 3.1E-17 1E-21 161.5 10.7 205 191-425 2-245 (304)
74 1qvr_A CLPB protein; coiled co 99.7 8.6E-17 2.9E-21 179.1 15.6 206 184-415 163-395 (854)
75 1sxj_C Activator 1 40 kDa subu 99.7 7.6E-16 2.6E-20 153.5 18.1 211 179-428 13-235 (340)
76 1qvr_A CLPB protein; coiled co 99.7 2.4E-16 8.1E-21 175.6 12.9 205 190-415 557-822 (854)
77 3f9v_A Minichromosome maintena 99.7 9.4E-17 3.2E-21 171.7 8.8 225 192-436 296-591 (595)
78 3co5_A Putative two-component 99.6 2.5E-16 8.5E-21 137.6 5.4 112 192-340 5-116 (143)
79 3n70_A Transport activator; si 99.6 4.1E-16 1.4E-20 136.4 6.5 112 192-340 2-116 (145)
80 3k1j_A LON protease, ATP-depen 99.6 8.4E-15 2.9E-19 157.1 14.9 221 183-431 33-374 (604)
81 1w5s_A Origin recognition comp 99.6 2.5E-13 8.4E-18 137.7 21.2 228 190-433 21-294 (412)
82 1a5t_A Delta prime, HOLB; zinc 99.5 6.7E-13 2.3E-17 132.0 18.9 174 195-407 6-207 (334)
83 3kw6_A 26S protease regulatory 99.5 9.9E-14 3.4E-18 108.4 9.3 77 360-436 1-77 (78)
84 1ny5_A Transcriptional regulat 99.5 1.8E-13 6.3E-18 138.9 13.0 208 190-429 136-384 (387)
85 2krk_A 26S protease regulatory 99.4 2.3E-13 7.9E-18 108.3 8.4 77 359-435 8-84 (86)
86 3cmw_A Protein RECA, recombina 99.4 6.3E-14 2.2E-18 162.7 6.8 155 185-340 1014-1218(1706)
87 2wg5_A General control protein 99.4 1.7E-13 5.9E-18 113.6 6.9 96 88-183 13-108 (109)
88 2gno_A DNA polymerase III, gam 99.4 3.2E-12 1.1E-16 125.6 15.0 142 195-375 1-152 (305)
89 3vlf_B 26S protease regulatory 99.4 1.4E-12 4.7E-17 104.3 8.6 76 363-438 2-77 (88)
90 3dzd_A Transcriptional regulat 99.3 4.3E-12 1.5E-16 128.0 9.0 193 191-412 129-361 (368)
91 3ec2_A DNA replication protein 99.3 9.3E-12 3.2E-16 112.1 9.1 128 185-341 4-144 (180)
92 3f8t_A Predicted ATPase involv 99.2 1.1E-10 3.9E-15 119.4 16.2 218 193-438 215-489 (506)
93 4akg_A Glutathione S-transfera 99.2 9E-11 3.1E-15 141.9 18.0 138 225-377 1267-1433(2695)
94 3aji_B S6C, proteasome (prosom 99.2 2.4E-11 8.1E-16 95.9 7.8 75 363-437 2-76 (83)
95 3h43_A Proteasome-activating n 99.2 2.7E-11 9.3E-16 95.6 6.6 75 97-171 3-77 (85)
96 2qen_A Walker-type ATPase; unk 99.2 3.4E-09 1.1E-13 104.4 22.7 191 186-406 7-247 (350)
97 2dzn_B 26S protease regulatory 99.2 6.6E-12 2.3E-16 99.0 2.4 71 365-435 1-71 (82)
98 2fna_A Conserved hypothetical 99.1 2.3E-09 7.7E-14 105.8 20.1 188 186-407 8-252 (357)
99 2w58_A DNAI, primosome compone 99.0 3.1E-10 1.1E-14 103.8 6.6 99 187-296 21-127 (202)
100 2kjq_A DNAA-related protein; s 99.0 8E-10 2.7E-14 97.0 7.8 102 225-357 36-143 (149)
101 2vhj_A Ntpase P4, P4; non- hyd 98.9 3.2E-10 1.1E-14 111.2 3.4 122 221-347 119-242 (331)
102 4akg_A Glutathione S-transfera 98.9 3E-08 1E-12 120.2 19.7 166 225-412 645-840 (2695)
103 2qgz_A Helicase loader, putati 98.9 2.2E-09 7.5E-14 105.5 6.7 97 188-296 121-226 (308)
104 2r2a_A Uncharacterized protein 98.8 1.1E-08 3.7E-13 94.2 8.5 129 225-365 5-156 (199)
105 1svm_A Large T antigen; AAA+ f 98.6 2.8E-08 9.4E-13 100.2 6.1 119 221-361 165-284 (377)
106 1tue_A Replication protein E1; 98.6 7E-08 2.4E-12 88.6 7.8 110 223-362 56-179 (212)
107 1jr3_D DNA polymerase III, del 98.6 5.7E-07 1.9E-11 89.1 13.8 175 225-431 18-208 (343)
108 3cmu_A Protein RECA, recombina 98.6 1.4E-07 4.9E-12 111.2 10.8 123 214-336 1413-1560(2050)
109 3m9b_A Proteasome-associated A 98.5 3.8E-07 1.3E-11 84.8 9.0 84 88-173 74-157 (251)
110 3vkg_A Dynein heavy chain, cyt 98.5 4.8E-07 1.6E-11 110.6 12.1 138 225-376 1304-1470(3245)
111 1ye8_A Protein THEP1, hypothet 98.4 9.8E-07 3.3E-11 79.5 10.0 27 227-253 2-28 (178)
112 1u0j_A DNA replication protein 98.4 9.4E-07 3.2E-11 84.5 10.1 120 225-374 104-250 (267)
113 3vkg_A Dynein heavy chain, cyt 98.4 4.6E-06 1.6E-10 102.2 17.5 163 225-411 604-799 (3245)
114 1z6t_A APAF-1, apoptotic prote 98.1 9.3E-05 3.2E-09 78.3 19.5 176 188-404 121-327 (591)
115 2w0m_A SSO2452; RECA, SSPF, un 98.1 7.9E-06 2.7E-10 75.2 9.7 109 221-340 19-168 (235)
116 3hr8_A Protein RECA; alpha and 98.1 6E-06 2E-10 82.4 8.4 117 221-337 57-195 (356)
117 1xp8_A RECA protein, recombina 98.1 1.3E-05 4.3E-10 80.4 10.2 78 221-298 70-166 (366)
118 2ehv_A Hypothetical protein PH 98.0 1.9E-05 6.4E-10 73.7 10.3 114 221-343 26-185 (251)
119 2zr9_A Protein RECA, recombina 98.0 5.6E-06 1.9E-10 82.5 6.9 78 221-298 57-153 (349)
120 1n0w_A DNA repair protein RAD5 98.0 1.2E-05 4.3E-10 74.7 8.6 78 221-298 20-133 (243)
121 3sfz_A APAF-1, apoptotic pepti 98.0 9.8E-05 3.4E-09 84.3 17.7 171 187-397 120-321 (1249)
122 2cvh_A DNA repair and recombin 98.0 7.8E-06 2.7E-10 74.9 6.6 40 221-260 16-55 (220)
123 2z43_A DNA repair and recombin 98.0 1.3E-05 4.6E-10 78.8 8.2 116 221-337 103-255 (324)
124 3cmu_A Protein RECA, recombina 97.9 7.1E-06 2.4E-10 97.0 5.5 128 211-338 715-867 (2050)
125 1v5w_A DMC1, meiotic recombina 97.9 1.6E-05 5.4E-10 79.0 7.1 117 221-338 118-272 (343)
126 1u94_A RECA protein, recombina 97.9 1.7E-05 5.9E-10 79.2 7.3 78 221-298 59-155 (356)
127 3upu_A ATP-dependent DNA helic 97.9 5.6E-05 1.9E-09 77.9 11.1 57 179-249 12-69 (459)
128 4a74_A DNA repair and recombin 97.9 2.6E-05 8.8E-10 71.8 7.5 29 221-249 21-49 (231)
129 2orw_A Thymidine kinase; TMTK, 97.8 1E-05 3.5E-10 73.1 4.0 31 226-256 4-37 (184)
130 3lda_A DNA repair protein RAD5 97.8 4.5E-05 1.5E-09 77.3 9.0 118 221-339 174-327 (400)
131 3io5_A Recombination and repai 97.8 5.4E-05 1.9E-09 74.0 8.4 77 221-298 25-125 (333)
132 1g41_A Heat shock protein HSLU 97.8 0.00013 4.3E-09 74.8 11.5 158 269-433 237-434 (444)
133 1pzn_A RAD51, DNA repair and r 97.7 3.9E-05 1.3E-09 76.4 7.1 40 221-260 127-175 (349)
134 2a5y_B CED-4; apoptosis; HET: 97.7 0.00036 1.2E-08 73.5 15.0 166 194-397 131-330 (549)
135 2b8t_A Thymidine kinase; deoxy 97.7 0.0001 3.5E-09 68.7 9.2 71 226-296 13-101 (223)
136 2i1q_A DNA repair and recombin 97.7 5.1E-05 1.7E-09 74.4 7.3 116 221-337 94-256 (322)
137 2dr3_A UPF0273 protein PH0284; 97.7 0.00019 6.5E-09 66.6 10.9 38 221-258 19-59 (247)
138 1qhx_A CPT, protein (chloramph 97.7 3.7E-05 1.3E-09 68.0 5.7 38 225-262 3-40 (178)
139 2r8r_A Sensor protein; KDPD, P 97.6 0.0023 8E-08 59.4 16.1 161 226-412 7-208 (228)
140 3jvv_A Twitching mobility prot 97.6 0.00028 9.6E-09 70.3 10.6 70 225-294 123-206 (356)
141 3cmw_A Protein RECA, recombina 97.6 6.7E-05 2.3E-09 87.8 6.9 78 221-298 728-824 (1706)
142 3vaa_A Shikimate kinase, SK; s 97.5 6.9E-05 2.4E-09 68.0 4.9 40 223-264 23-62 (199)
143 3trf_A Shikimate kinase, SK; a 97.5 8.3E-05 2.8E-09 66.2 4.7 41 225-267 5-45 (185)
144 1nlf_A Regulatory protein REPA 97.5 0.00011 3.8E-09 70.3 5.7 28 221-248 26-53 (279)
145 2eyu_A Twitching motility prot 97.4 0.00013 4.3E-09 69.6 5.6 72 223-294 23-108 (261)
146 2rhm_A Putative kinase; P-loop 97.4 0.00012 4.2E-09 65.4 5.1 33 223-255 3-35 (193)
147 2p5t_B PEZT; postsegregational 97.4 0.00053 1.8E-08 64.7 9.8 39 223-261 30-68 (253)
148 2iut_A DNA translocase FTSK; n 97.4 0.0018 6.2E-08 68.1 14.3 74 286-372 345-420 (574)
149 1zp6_A Hypothetical protein AT 97.4 0.0001 3.6E-09 65.9 4.3 40 222-261 6-45 (191)
150 2ewv_A Twitching motility prot 97.4 0.00047 1.6E-08 69.1 9.5 78 217-294 128-219 (372)
151 2zts_A Putative uncharacterize 97.3 0.00087 3E-08 62.1 10.0 38 221-258 26-67 (251)
152 3kb2_A SPBC2 prophage-derived 97.3 0.00018 6.2E-09 62.9 4.4 31 227-257 3-33 (173)
153 3iij_A Coilin-interacting nucl 97.3 0.00023 8E-09 63.1 5.0 32 224-255 10-41 (180)
154 1kag_A SKI, shikimate kinase I 97.3 0.00019 6.6E-09 63.0 4.4 35 226-262 5-39 (173)
155 2r6a_A DNAB helicase, replicat 97.3 0.0005 1.7E-08 70.7 8.2 38 221-258 199-240 (454)
156 1via_A Shikimate kinase; struc 97.2 0.00019 6.4E-09 63.5 4.2 29 227-255 6-34 (175)
157 1y63_A LMAJ004144AAA protein; 97.2 0.00023 7.8E-09 63.7 4.6 31 225-255 10-41 (184)
158 1gvn_B Zeta; postsegregational 97.2 0.00036 1.2E-08 67.3 5.9 38 224-261 32-69 (287)
159 1zuh_A Shikimate kinase; alpha 97.2 0.00027 9.3E-09 61.9 4.5 37 226-264 8-44 (168)
160 2iyv_A Shikimate kinase, SK; t 97.2 0.00025 8.4E-09 63.1 4.2 35 227-263 4-38 (184)
161 2i3b_A HCR-ntpase, human cance 97.2 0.00033 1.1E-08 63.4 5.0 23 227-249 3-25 (189)
162 2ius_A DNA translocase FTSK; n 97.2 0.0018 6.1E-08 67.4 11.0 76 285-373 297-375 (512)
163 3e1s_A Exodeoxyribonuclease V, 97.1 0.00066 2.2E-08 72.0 7.4 71 226-296 205-291 (574)
164 2cdn_A Adenylate kinase; phosp 97.1 0.00043 1.5E-08 62.6 5.2 31 225-255 20-50 (201)
165 1tev_A UMP-CMP kinase; ploop, 97.1 0.00038 1.3E-08 62.0 4.8 36 225-262 3-38 (196)
166 1qf9_A UMP/CMP kinase, protein 97.1 0.0004 1.4E-08 61.7 4.9 37 225-263 6-42 (194)
167 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00095 3.3E-08 63.2 7.7 38 225-262 4-44 (260)
168 1aky_A Adenylate kinase; ATP:A 97.1 0.00042 1.4E-08 63.6 5.1 31 225-255 4-34 (220)
169 2c95_A Adenylate kinase 1; tra 97.1 0.00039 1.3E-08 62.2 4.7 31 225-255 9-39 (196)
170 2ze6_A Isopentenyl transferase 97.1 0.00031 1E-08 66.5 4.1 32 227-258 3-34 (253)
171 3cm0_A Adenylate kinase; ATP-b 97.1 0.00035 1.2E-08 62.1 4.2 29 226-254 5-33 (186)
172 3lw7_A Adenylate kinase relate 97.1 0.00038 1.3E-08 60.6 4.3 28 227-255 3-30 (179)
173 1e6c_A Shikimate kinase; phosp 97.1 0.00037 1.3E-08 61.1 4.2 29 227-255 4-32 (173)
174 1ly1_A Polynucleotide kinase; 97.1 0.0003 1E-08 61.9 3.6 34 225-260 2-36 (181)
175 4gp7_A Metallophosphoesterase; 97.1 0.00032 1.1E-08 62.1 3.7 22 223-244 7-28 (171)
176 3dm5_A SRP54, signal recogniti 97.0 0.0053 1.8E-07 62.7 13.1 73 224-296 99-194 (443)
177 3t61_A Gluconokinase; PSI-biol 97.0 0.00048 1.6E-08 62.3 4.8 31 225-255 18-48 (202)
178 2vli_A Antibiotic resistance p 97.0 0.00033 1.1E-08 62.0 3.7 30 225-254 5-34 (183)
179 3umf_A Adenylate kinase; rossm 97.0 0.0005 1.7E-08 63.6 5.0 41 223-265 27-67 (217)
180 2fz4_A DNA repair protein RAD2 97.0 0.0015 5.3E-08 60.9 8.4 33 227-259 110-142 (237)
181 1zd8_A GTP:AMP phosphotransfer 97.0 0.00046 1.6E-08 63.7 4.6 32 224-255 6-37 (227)
182 4eun_A Thermoresistant glucoki 97.0 0.00053 1.8E-08 62.1 4.9 36 224-261 28-63 (200)
183 2q6t_A DNAB replication FORK h 97.0 0.001 3.4E-08 68.2 7.5 38 221-258 196-237 (444)
184 1knq_A Gluconate kinase; ALFA/ 97.0 0.00052 1.8E-08 60.4 4.7 35 225-261 8-42 (175)
185 1kht_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 61.5 4.0 25 226-250 4-28 (192)
186 4g1u_C Hemin import ATP-bindin 97.0 0.0003 1E-08 67.2 3.0 28 222-249 34-61 (266)
187 2bwj_A Adenylate kinase 5; pho 97.0 0.00051 1.8E-08 61.5 4.4 36 225-262 12-47 (199)
188 2pez_A Bifunctional 3'-phospho 97.0 0.00079 2.7E-08 59.6 5.5 37 225-261 5-44 (179)
189 3tui_C Methionine import ATP-b 97.0 0.0029 9.8E-08 63.1 10.1 51 278-341 175-225 (366)
190 1vma_A Cell division protein F 97.0 0.01 3.5E-07 57.7 13.8 73 223-295 102-197 (306)
191 1ak2_A Adenylate kinase isoenz 97.0 0.00069 2.4E-08 62.9 5.2 31 225-255 16-46 (233)
192 1g5t_A COB(I)alamin adenosyltr 97.0 0.0038 1.3E-07 56.6 9.9 115 227-359 30-177 (196)
193 2pt5_A Shikimate kinase, SK; a 96.9 0.00057 1.9E-08 59.6 4.3 29 227-255 2-30 (168)
194 3dl0_A Adenylate kinase; phosp 96.9 0.00057 1.9E-08 62.4 4.4 30 227-256 2-31 (216)
195 3tlx_A Adenylate kinase 2; str 96.9 0.00069 2.4E-08 63.5 5.1 38 224-263 28-65 (243)
196 3fb4_A Adenylate kinase; psych 96.9 0.0006 2E-08 62.2 4.5 29 227-255 2-30 (216)
197 3uie_A Adenylyl-sulfate kinase 96.9 0.0009 3.1E-08 60.5 5.5 38 224-261 24-64 (200)
198 1zak_A Adenylate kinase; ATP:A 96.9 0.0005 1.7E-08 63.2 3.9 31 225-255 5-35 (222)
199 1w4r_A Thymidine kinase; type 96.9 0.0038 1.3E-07 56.6 9.5 69 225-296 20-103 (195)
200 3be4_A Adenylate kinase; malar 96.9 0.00061 2.1E-08 62.6 4.3 31 226-256 6-36 (217)
201 1ukz_A Uridylate kinase; trans 96.9 0.00077 2.6E-08 60.8 4.9 37 225-263 15-51 (203)
202 3bh0_A DNAB-like replicative h 96.9 0.0023 8E-08 62.4 8.7 38 221-258 64-104 (315)
203 2bbw_A Adenylate kinase 4, AK4 96.9 0.00069 2.4E-08 63.4 4.7 30 225-254 27-56 (246)
204 3kl4_A SRP54, signal recogniti 96.9 0.0051 1.7E-07 62.7 11.3 195 224-434 96-342 (433)
205 1nks_A Adenylate kinase; therm 96.8 0.00073 2.5E-08 60.0 4.2 35 227-261 3-40 (194)
206 3rlf_A Maltose/maltodextrin im 96.8 0.0025 8.6E-08 63.9 8.5 28 222-249 26-53 (381)
207 2ixe_A Antigen peptide transpo 96.8 0.0028 9.5E-08 60.6 8.5 29 221-249 41-69 (271)
208 1tf7_A KAIC; homohexamer, hexa 96.8 0.0038 1.3E-07 65.2 10.0 110 221-340 277-417 (525)
209 3sr0_A Adenylate kinase; phosp 96.8 0.00087 3E-08 61.5 4.5 35 227-263 2-36 (206)
210 1tf7_A KAIC; homohexamer, hexa 96.8 0.0033 1.1E-07 65.8 9.5 113 222-343 36-188 (525)
211 3thx_B DNA mismatch repair pro 96.8 0.0027 9.2E-08 70.6 9.0 106 224-342 672-798 (918)
212 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.0025 8.6E-08 62.7 7.9 71 224-294 170-250 (330)
213 2jaq_A Deoxyguanosine kinase; 96.8 0.00093 3.2E-08 59.9 4.3 29 227-255 2-30 (205)
214 3crm_A TRNA delta(2)-isopenten 96.7 0.001 3.6E-08 65.2 4.7 34 225-258 5-38 (323)
215 2pbr_A DTMP kinase, thymidylat 96.7 0.0012 4.2E-08 58.6 4.9 31 227-257 2-35 (195)
216 1cke_A CK, MSSA, protein (cyti 96.7 0.0012 4.1E-08 60.6 4.9 30 226-255 6-35 (227)
217 1e4v_A Adenylate kinase; trans 96.7 0.001 3.4E-08 60.8 4.3 30 227-256 2-31 (214)
218 1jjv_A Dephospho-COA kinase; P 96.7 0.0019 6.4E-08 58.4 5.9 33 227-262 4-36 (206)
219 1vt4_I APAF-1 related killer D 96.7 0.0039 1.3E-07 69.9 9.3 43 194-248 131-173 (1221)
220 1q57_A DNA primase/helicase; d 96.7 0.0031 1E-07 65.6 8.1 38 221-258 238-279 (503)
221 3nwj_A ATSK2; P loop, shikimat 96.7 0.00084 2.9E-08 63.5 3.5 31 225-255 48-78 (250)
222 2v54_A DTMP kinase, thymidylat 96.7 0.0015 5E-08 58.8 4.9 33 225-257 4-37 (204)
223 2if2_A Dephospho-COA kinase; a 96.7 0.0026 9E-08 57.3 6.5 35 227-264 3-37 (204)
224 2xb4_A Adenylate kinase; ATP-b 96.7 0.0013 4.4E-08 60.7 4.5 34 227-262 2-35 (223)
225 1xx6_A Thymidine kinase; NESG, 96.7 0.006 2.1E-07 55.1 8.8 71 225-296 8-93 (191)
226 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0011 3.6E-08 65.8 3.9 53 194-255 2-54 (359)
227 2xau_A PRE-mRNA-splicing facto 96.6 0.0044 1.5E-07 67.9 9.2 64 183-248 67-132 (773)
228 2z0h_A DTMP kinase, thymidylat 96.6 0.0017 5.7E-08 58.0 4.9 30 228-257 3-35 (197)
229 2yyz_A Sugar ABC transporter, 96.6 0.0051 1.7E-07 61.2 8.7 28 222-249 26-53 (359)
230 1z47_A CYSA, putative ABC-tran 96.6 0.0045 1.5E-07 61.5 7.9 28 222-249 38-65 (355)
231 3r20_A Cytidylate kinase; stru 96.6 0.0019 6.6E-08 60.3 4.9 31 225-255 9-39 (233)
232 2plr_A DTMP kinase, probable t 96.5 0.0016 5.5E-08 58.7 4.2 28 225-252 4-31 (213)
233 3ake_A Cytidylate kinase; CMP 96.5 0.0017 5.6E-08 58.6 4.2 29 227-255 4-32 (208)
234 3bgw_A DNAB-like replicative h 96.5 0.012 4E-07 60.3 10.8 38 221-258 193-233 (444)
235 1uf9_A TT1252 protein; P-loop, 96.5 0.002 6.8E-08 57.8 4.3 35 225-262 8-42 (203)
236 3nh6_A ATP-binding cassette SU 96.5 0.0086 2.9E-07 58.2 9.1 29 221-249 76-104 (306)
237 1nn5_A Similar to deoxythymidy 96.5 0.00094 3.2E-08 60.6 2.1 28 224-251 8-35 (215)
238 2wwf_A Thymidilate kinase, put 96.5 0.00086 3E-08 60.7 1.9 28 225-252 10-37 (212)
239 2j41_A Guanylate kinase; GMP, 96.4 0.0019 6.5E-08 58.1 4.0 27 223-249 4-30 (207)
240 2qor_A Guanylate kinase; phosp 96.4 0.002 6.8E-08 58.4 4.0 28 223-250 10-37 (204)
241 2grj_A Dephospho-COA kinase; T 96.4 0.0022 7.7E-08 58.0 4.2 35 227-263 14-48 (192)
242 4a1f_A DNAB helicase, replicat 96.4 0.02 7E-07 56.3 11.4 38 221-258 42-82 (338)
243 2yvu_A Probable adenylyl-sulfa 96.4 0.004 1.4E-07 55.3 5.7 38 224-261 12-52 (186)
244 4e22_A Cytidylate kinase; P-lo 96.4 0.0027 9.4E-08 59.7 4.9 30 225-254 27-56 (252)
245 1kgd_A CASK, peripheral plasma 96.4 0.0023 7.9E-08 56.9 4.1 26 225-250 5-30 (180)
246 1uj2_A Uridine-cytidine kinase 96.4 0.0035 1.2E-07 58.8 5.6 38 225-262 22-67 (252)
247 1rz3_A Hypothetical protein rb 96.4 0.0088 3E-07 54.0 8.1 35 224-258 21-58 (201)
248 3thx_A DNA mismatch repair pro 96.4 0.0072 2.5E-07 67.4 8.8 22 226-247 663-684 (934)
249 1m7g_A Adenylylsulfate kinase; 96.3 0.0029 9.9E-08 57.6 4.6 39 223-261 23-65 (211)
250 3c8u_A Fructokinase; YP_612366 96.3 0.0042 1.4E-07 56.5 5.6 27 224-250 21-47 (208)
251 1vht_A Dephospho-COA kinase; s 96.3 0.0034 1.2E-07 57.3 4.7 35 225-262 4-38 (218)
252 2qt1_A Nicotinamide riboside k 96.2 0.0022 7.6E-08 58.1 3.3 30 224-253 20-50 (207)
253 1w36_D RECD, exodeoxyribonucle 96.2 0.013 4.3E-07 62.5 9.7 24 226-249 165-188 (608)
254 1q3t_A Cytidylate kinase; nucl 96.2 0.0038 1.3E-07 57.9 4.9 33 223-255 14-46 (236)
255 3foz_A TRNA delta(2)-isopenten 96.2 0.003 1E-07 61.5 4.3 34 225-258 10-43 (316)
256 3a8t_A Adenylate isopentenyltr 96.2 0.0022 7.4E-08 63.2 3.3 35 225-259 40-74 (339)
257 4b3f_X DNA-binding protein smu 96.2 0.021 7.1E-07 61.2 11.3 49 196-259 191-242 (646)
258 3tr0_A Guanylate kinase, GMP k 96.2 0.0031 1E-07 56.7 4.0 27 224-250 6-32 (205)
259 1p9r_A General secretion pathw 96.2 0.012 4.2E-07 59.7 8.9 25 226-250 168-192 (418)
260 3tau_A Guanylate kinase, GMP k 96.2 0.0029 1E-07 57.6 3.9 27 224-250 7-33 (208)
261 3b6e_A Interferon-induced heli 96.2 0.021 7.1E-07 51.3 9.6 23 226-248 49-71 (216)
262 2bdt_A BH3686; alpha-beta prot 96.2 0.0035 1.2E-07 55.8 4.3 34 227-261 4-37 (189)
263 2h92_A Cytidylate kinase; ross 96.2 0.0037 1.3E-07 57.0 4.4 30 226-255 4-33 (219)
264 1htw_A HI0065; nucleotide-bind 96.2 0.0039 1.3E-07 54.6 4.3 29 221-249 29-57 (158)
265 2px0_A Flagellar biosynthesis 96.2 0.039 1.3E-06 53.2 11.8 35 224-258 104-142 (296)
266 2oap_1 GSPE-2, type II secreti 96.1 0.0063 2.1E-07 63.5 6.5 70 225-294 260-343 (511)
267 3llm_A ATP-dependent RNA helic 96.1 0.028 9.7E-07 51.9 10.3 22 225-246 76-97 (235)
268 2gxq_A Heat resistant RNA depe 96.1 0.023 7.9E-07 50.8 9.3 23 226-248 39-62 (207)
269 3asz_A Uridine kinase; cytidin 96.1 0.0033 1.1E-07 57.0 3.6 27 224-250 5-31 (211)
270 1ltq_A Polynucleotide kinase; 96.1 0.0036 1.2E-07 60.1 4.0 34 226-261 3-37 (301)
271 1ex7_A Guanylate kinase; subst 96.0 0.005 1.7E-07 55.5 4.5 27 227-253 3-29 (186)
272 2axn_A 6-phosphofructo-2-kinas 96.0 0.02 6.8E-07 59.8 9.5 39 225-263 35-76 (520)
273 1wb9_A DNA mismatch repair pro 96.0 0.026 8.9E-07 62.0 10.6 24 225-248 607-630 (800)
274 1lvg_A Guanylate kinase, GMP k 96.0 0.0039 1.3E-07 56.4 3.5 26 225-250 4-29 (198)
275 2j9r_A Thymidine kinase; TK1, 96.0 0.02 6.7E-07 52.7 8.2 31 227-257 30-63 (214)
276 2f6r_A COA synthase, bifunctio 96.0 0.0055 1.9E-07 58.7 4.7 35 225-262 75-109 (281)
277 2yhs_A FTSY, cell division pro 96.0 0.055 1.9E-06 55.9 12.4 28 222-249 290-317 (503)
278 3a00_A Guanylate kinase, GMP k 95.9 0.004 1.4E-07 55.5 3.5 25 226-250 2-26 (186)
279 3exa_A TRNA delta(2)-isopenten 95.9 0.0046 1.6E-07 60.3 4.1 33 226-258 4-36 (322)
280 4aby_A DNA repair protein RECN 95.9 0.032 1.1E-06 55.9 10.5 44 282-340 311-356 (415)
281 3ney_A 55 kDa erythrocyte memb 95.9 0.0071 2.4E-07 55.0 5.0 27 224-250 18-44 (197)
282 1z6g_A Guanylate kinase; struc 95.9 0.0042 1.5E-07 57.1 3.5 28 222-249 20-47 (218)
283 2j37_W Signal recognition part 95.9 0.017 5.8E-07 60.0 8.3 35 224-258 100-137 (504)
284 3d3q_A TRNA delta(2)-isopenten 95.9 0.0043 1.5E-07 61.2 3.6 32 226-257 8-39 (340)
285 3zvl_A Bifunctional polynucleo 95.9 0.0038 1.3E-07 63.4 3.3 31 224-254 257-287 (416)
286 1znw_A Guanylate kinase, GMP k 95.8 0.0058 2E-07 55.5 4.0 28 223-250 18-45 (207)
287 1qde_A EIF4A, translation init 95.8 0.062 2.1E-06 48.7 11.0 23 225-247 51-74 (224)
288 3qf4_B Uncharacterized ABC tra 95.8 0.036 1.2E-06 58.8 10.7 29 221-249 377-405 (598)
289 3j16_B RLI1P; ribosome recycli 95.8 0.019 6.6E-07 61.0 8.4 27 223-249 101-127 (608)
290 2v9p_A Replication protein E1; 95.8 0.0065 2.2E-07 59.0 4.4 30 221-250 122-151 (305)
291 3fdi_A Uncharacterized protein 95.8 0.0066 2.3E-07 55.2 4.1 28 227-254 8-35 (201)
292 2jeo_A Uridine-cytidine kinase 95.7 0.0065 2.2E-07 56.7 4.1 30 223-252 23-52 (245)
293 3ozx_A RNAse L inhibitor; ATP 95.7 0.013 4.3E-07 61.6 6.7 49 277-340 149-197 (538)
294 2qmh_A HPR kinase/phosphorylas 95.7 0.0061 2.1E-07 55.5 3.6 26 225-250 34-59 (205)
295 4a82_A Cystic fibrosis transme 95.7 0.019 6.4E-07 60.7 8.0 29 222-250 364-392 (578)
296 3e2i_A Thymidine kinase; Zn-bi 95.7 0.0067 2.3E-07 55.9 3.8 21 227-247 30-51 (219)
297 3e70_C DPA, signal recognition 95.7 0.04 1.4E-06 54.0 9.7 27 223-249 127-153 (328)
298 1cr0_A DNA primase/helicase; R 95.7 0.0068 2.3E-07 58.1 3.9 37 221-257 31-71 (296)
299 3b9q_A Chloroplast SRP recepto 95.6 0.0087 3E-07 58.0 4.7 28 222-249 97-124 (302)
300 1ewq_A DNA mismatch repair pro 95.6 0.035 1.2E-06 60.6 9.9 24 225-248 576-599 (765)
301 3b5x_A Lipid A export ATP-bind 95.6 0.037 1.3E-06 58.5 9.9 28 222-249 366-393 (582)
302 3eph_A TRNA isopentenyltransfe 95.6 0.0066 2.3E-07 61.2 3.8 32 225-256 2-33 (409)
303 1t6n_A Probable ATP-dependent 95.6 0.16 5.4E-06 45.9 12.8 23 226-248 52-74 (220)
304 3qf4_A ABC transporter, ATP-bi 95.6 0.036 1.2E-06 58.7 9.6 29 222-250 366-394 (587)
305 2v3c_C SRP54, signal recogniti 95.5 0.021 7.2E-07 58.2 7.2 35 224-258 98-135 (432)
306 1j8m_F SRP54, signal recogniti 95.5 0.038 1.3E-06 53.3 8.7 72 225-296 98-192 (297)
307 2og2_A Putative signal recogni 95.5 0.01 3.5E-07 59.0 4.7 28 222-249 154-181 (359)
308 1x6v_B Bifunctional 3'-phospho 95.4 0.012 4E-07 62.8 5.1 37 225-261 52-91 (630)
309 4f4c_A Multidrug resistance pr 95.4 0.016 5.6E-07 67.1 6.7 28 223-250 442-469 (1321)
310 3lnc_A Guanylate kinase, GMP k 95.4 0.0048 1.7E-07 56.9 1.8 27 223-249 25-52 (231)
311 1s96_A Guanylate kinase, GMP k 95.4 0.01 3.5E-07 54.7 4.0 28 223-250 14-41 (219)
312 1odf_A YGR205W, hypothetical 3 95.4 0.02 7E-07 55.1 6.1 28 223-250 29-56 (290)
313 1gtv_A TMK, thymidylate kinase 95.3 0.0047 1.6E-07 55.8 1.5 25 227-251 2-26 (214)
314 1hv8_A Putative ATP-dependent 95.3 0.13 4.6E-06 49.6 12.0 24 225-248 44-67 (367)
315 2pl3_A Probable ATP-dependent 95.3 0.043 1.5E-06 50.4 7.9 19 225-243 62-80 (236)
316 3iuy_A Probable ATP-dependent 95.3 0.072 2.5E-06 48.5 9.4 19 225-243 57-75 (228)
317 3gmt_A Adenylate kinase; ssgci 95.2 0.013 4.6E-07 54.4 4.3 35 227-263 10-44 (230)
318 2xxa_A Signal recognition part 95.2 0.035 1.2E-06 56.6 7.8 73 224-296 99-195 (433)
319 2orv_A Thymidine kinase; TP4A 95.2 0.081 2.8E-06 49.1 9.5 22 226-247 20-41 (234)
320 4eaq_A DTMP kinase, thymidylat 95.2 0.014 4.7E-07 54.1 4.4 32 224-255 25-58 (229)
321 3bor_A Human initiation factor 95.2 0.077 2.6E-06 48.8 9.5 19 225-243 67-85 (237)
322 2gza_A Type IV secretion syste 95.1 0.011 3.8E-07 58.7 3.6 73 222-294 172-262 (361)
323 3tif_A Uncharacterized ABC tra 95.1 0.0081 2.8E-07 56.0 2.4 28 222-249 28-55 (235)
324 3ozx_A RNAse L inhibitor; ATP 95.0 0.029 1E-06 58.8 6.6 27 223-249 292-318 (538)
325 3hdt_A Putative kinase; struct 95.0 0.015 5.3E-07 53.7 4.1 30 226-255 15-44 (223)
326 2o8b_B DNA mismatch repair pro 95.0 0.085 2.9E-06 59.4 10.7 22 225-246 789-810 (1022)
327 2cbz_A Multidrug resistance-as 95.0 0.0092 3.1E-07 55.7 2.4 28 222-249 28-55 (237)
328 1c9k_A COBU, adenosylcobinamid 95.0 0.014 4.9E-07 52.1 3.5 32 228-260 2-33 (180)
329 3aez_A Pantothenate kinase; tr 94.9 0.017 6E-07 56.2 4.3 28 223-250 88-115 (312)
330 1ls1_A Signal recognition part 94.9 0.061 2.1E-06 51.8 8.2 73 224-296 97-192 (295)
331 2pcj_A ABC transporter, lipopr 94.9 0.0079 2.7E-07 55.7 1.7 28 222-249 27-54 (224)
332 2qm8_A GTPase/ATPase; G protei 94.9 0.046 1.6E-06 53.7 7.4 27 223-249 53-79 (337)
333 2iw3_A Elongation factor 3A; a 94.9 0.033 1.1E-06 62.2 6.9 25 223-247 459-483 (986)
334 1a7j_A Phosphoribulokinase; tr 94.9 0.015 5.3E-07 55.9 3.7 36 226-261 6-44 (290)
335 2onk_A Molybdate/tungstate ABC 94.9 0.012 4.1E-07 55.1 2.8 28 221-249 21-48 (240)
336 4f4c_A Multidrug resistance pr 94.9 0.033 1.1E-06 64.5 7.0 28 222-249 1102-1129(1321)
337 2ffh_A Protein (FFH); SRP54, s 94.8 0.11 3.7E-06 52.8 10.0 73 224-296 97-192 (425)
338 1b0u_A Histidine permease; ABC 94.8 0.011 3.7E-07 56.1 2.4 29 222-250 29-57 (262)
339 1mv5_A LMRA, multidrug resista 94.8 0.011 3.8E-07 55.3 2.3 28 222-249 25-52 (243)
340 2va8_A SSO2462, SKI2-type heli 94.8 0.13 4.3E-06 55.6 11.0 22 223-244 44-65 (715)
341 1m8p_A Sulfate adenylyltransfe 94.7 0.022 7.6E-07 60.2 4.8 37 225-261 396-436 (573)
342 2zu0_C Probable ATP-dependent 94.7 0.014 4.9E-07 55.5 2.9 27 222-248 43-69 (267)
343 3kta_A Chromosome segregation 94.7 0.021 7.1E-07 50.3 3.8 24 227-250 28-51 (182)
344 3p32_A Probable GTPase RV1496/ 94.7 0.1 3.5E-06 51.5 9.2 25 225-249 79-103 (355)
345 2olj_A Amino acid ABC transpor 94.7 0.013 4.3E-07 55.7 2.4 28 222-249 47-74 (263)
346 1g6h_A High-affinity branched- 94.6 0.011 3.8E-07 55.8 2.0 27 223-249 31-57 (257)
347 3cr8_A Sulfate adenylyltranfer 94.6 0.022 7.7E-07 59.8 4.5 39 224-262 368-410 (552)
348 2ghi_A Transport protein; mult 94.6 0.013 4.5E-07 55.5 2.4 28 222-249 43-70 (260)
349 2d2e_A SUFC protein; ABC-ATPas 94.6 0.013 4.5E-07 55.1 2.4 27 222-248 26-52 (250)
350 3tbk_A RIG-I helicase domain; 94.6 0.26 8.9E-06 50.6 12.5 23 226-248 20-42 (555)
351 1sgw_A Putative ABC transporte 94.6 0.011 3.6E-07 54.5 1.6 28 222-249 32-59 (214)
352 2pze_A Cystic fibrosis transme 94.5 0.012 4.1E-07 54.6 1.9 28 222-249 31-58 (229)
353 3fvq_A Fe(3+) IONS import ATP- 94.5 0.015 5.1E-07 57.8 2.7 28 222-249 27-54 (359)
354 1vpl_A ABC transporter, ATP-bi 94.5 0.014 4.8E-07 55.2 2.4 28 222-249 38-65 (256)
355 2zj8_A DNA helicase, putative 94.5 0.13 4.6E-06 55.5 10.4 20 224-243 38-57 (720)
356 3tqf_A HPR(Ser) kinase; transf 94.5 0.021 7.1E-07 50.8 3.3 24 225-248 16-39 (181)
357 2fwr_A DNA repair protein RAD2 94.5 0.057 2E-06 55.0 7.1 37 226-262 109-146 (472)
358 1ji0_A ABC transporter; ATP bi 94.5 0.012 4.1E-07 55.0 1.9 28 222-249 29-56 (240)
359 1np6_A Molybdopterin-guanine d 94.5 0.027 9.2E-07 50.0 4.1 25 225-249 6-30 (174)
360 1rj9_A FTSY, signal recognitio 94.5 0.024 8.2E-07 55.0 4.1 26 224-249 101-126 (304)
361 3gfo_A Cobalt import ATP-bindi 94.5 0.012 4.2E-07 56.2 1.9 28 222-249 31-58 (275)
362 2z0m_A 337AA long hypothetical 94.5 0.14 4.8E-06 48.9 9.5 33 226-258 32-64 (337)
363 2ff7_A Alpha-hemolysin translo 94.5 0.012 4.2E-07 55.2 1.9 28 222-249 32-59 (247)
364 3ux8_A Excinuclease ABC, A sub 94.5 0.053 1.8E-06 58.3 7.1 43 285-341 565-607 (670)
365 1s2m_A Putative ATP-dependent 94.5 0.13 4.5E-06 50.7 9.5 21 226-246 59-79 (400)
366 2yz2_A Putative ABC transporte 94.5 0.015 5E-07 55.3 2.4 28 222-249 30-57 (266)
367 3pey_A ATP-dependent RNA helic 94.5 0.22 7.4E-06 48.7 11.0 22 225-246 44-65 (395)
368 3b85_A Phosphate starvation-in 94.4 0.02 6.9E-07 52.3 3.2 24 225-248 22-45 (208)
369 3tqc_A Pantothenate kinase; bi 94.4 0.03 1E-06 54.7 4.6 27 224-250 91-117 (321)
370 3fe2_A Probable ATP-dependent 94.4 0.086 3E-06 48.6 7.6 19 225-243 66-84 (242)
371 2gk6_A Regulator of nonsense t 94.4 0.039 1.3E-06 58.9 5.8 22 227-248 197-218 (624)
372 2qi9_C Vitamin B12 import ATP- 94.4 0.013 4.6E-07 55.1 1.9 29 222-250 23-51 (249)
373 3q72_A GTP-binding protein RAD 94.4 0.036 1.2E-06 47.3 4.5 21 227-247 4-24 (166)
374 1sq5_A Pantothenate kinase; P- 94.4 0.027 9.3E-07 54.5 4.2 27 224-250 79-105 (308)
375 2ged_A SR-beta, signal recogni 94.4 0.051 1.7E-06 47.8 5.6 25 225-249 48-72 (193)
376 1bif_A 6-phosphofructo-2-kinas 94.3 0.11 3.8E-06 53.3 8.9 36 225-260 39-77 (469)
377 2it1_A 362AA long hypothetical 94.3 0.019 6.6E-07 57.1 2.9 28 222-249 26-53 (362)
378 2ihy_A ABC transporter, ATP-bi 94.3 0.014 4.9E-07 55.9 1.9 28 222-249 44-71 (279)
379 2ocp_A DGK, deoxyguanosine kin 94.3 0.032 1.1E-06 51.7 4.2 26 225-250 2-27 (241)
380 2nq2_C Hypothetical ABC transp 94.3 0.014 4.9E-07 54.9 1.9 28 222-249 28-55 (253)
381 1v43_A Sugar-binding transport 94.3 0.02 6.9E-07 57.2 2.9 28 222-249 34-61 (372)
382 3vkw_A Replicase large subunit 94.2 0.055 1.9E-06 55.1 6.1 25 224-248 160-184 (446)
383 4i1u_A Dephospho-COA kinase; s 94.2 0.061 2.1E-06 49.2 5.8 35 227-264 11-45 (210)
384 3d31_A Sulfate/molybdate ABC t 94.1 0.017 5.7E-07 57.2 2.1 28 222-249 23-50 (348)
385 2j0s_A ATP-dependent RNA helic 94.1 0.18 6.1E-06 50.0 9.7 22 225-246 74-95 (410)
386 1g8f_A Sulfate adenylyltransfe 94.1 0.043 1.5E-06 57.0 5.2 27 225-251 395-421 (511)
387 3t1o_A Gliding protein MGLA; G 94.0 0.17 5.8E-06 44.1 8.4 23 227-249 16-38 (198)
388 1xjc_A MOBB protein homolog; s 94.0 0.037 1.3E-06 48.9 3.9 24 226-249 5-28 (169)
389 2p67_A LAO/AO transport system 94.0 0.23 7.8E-06 48.6 10.0 26 224-249 55-80 (341)
390 1g29_1 MALK, maltose transport 94.0 0.02 7E-07 57.1 2.4 27 223-249 27-53 (372)
391 1p5z_B DCK, deoxycytidine kina 94.0 0.016 5.4E-07 54.6 1.5 26 225-250 24-49 (263)
392 1lw7_A Transcriptional regulat 93.9 0.033 1.1E-06 55.2 3.7 28 225-252 170-197 (365)
393 1zu4_A FTSY; GTPase, signal re 93.9 0.034 1.1E-06 54.3 3.7 36 223-258 103-141 (320)
394 1oix_A RAS-related protein RAB 93.9 0.031 1.1E-06 49.6 3.1 23 227-249 31-53 (191)
395 2f9l_A RAB11B, member RAS onco 93.9 0.032 1.1E-06 49.7 3.2 22 227-248 7-28 (199)
396 3sop_A Neuronal-specific septi 93.9 0.032 1.1E-06 53.1 3.4 23 227-249 4-26 (270)
397 3eiq_A Eukaryotic initiation f 93.8 0.16 5.5E-06 50.2 8.6 20 225-244 77-96 (414)
398 3gd7_A Fusion complex of cysti 93.8 0.026 8.8E-07 56.7 2.7 27 222-248 44-70 (390)
399 3l9o_A ATP-dependent RNA helic 93.8 0.2 6.8E-06 57.0 10.3 34 225-258 199-235 (1108)
400 2pjz_A Hypothetical protein ST 93.8 0.024 8.1E-07 53.8 2.3 27 222-249 28-54 (263)
401 1oxx_K GLCV, glucose, ABC tran 93.7 0.017 5.9E-07 57.2 1.3 28 222-249 28-55 (353)
402 2bbs_A Cystic fibrosis transme 93.7 0.023 8E-07 54.7 2.2 28 222-249 61-88 (290)
403 2f1r_A Molybdopterin-guanine d 93.6 0.025 8.5E-07 50.1 1.9 24 227-250 4-27 (171)
404 1sky_E F1-ATPase, F1-ATP synth 93.6 0.034 1.2E-06 57.0 3.2 25 225-249 151-175 (473)
405 2wjy_A Regulator of nonsense t 93.6 0.069 2.4E-06 58.6 5.8 22 227-248 373-394 (800)
406 3g5u_A MCG1178, multidrug resi 93.5 0.14 4.8E-06 59.2 8.5 28 223-250 414-441 (1284)
407 4edh_A DTMP kinase, thymidylat 93.5 0.05 1.7E-06 49.8 3.9 26 225-250 6-31 (213)
408 3h1t_A Type I site-specific re 93.5 0.21 7.3E-06 52.4 9.3 25 225-249 198-222 (590)
409 2dyk_A GTP-binding protein; GT 93.4 0.045 1.5E-06 46.3 3.3 22 227-248 3-24 (161)
410 2f7s_A C25KG, RAS-related prot 93.4 0.41 1.4E-05 42.7 10.0 22 227-248 27-48 (217)
411 1nrj_B SR-beta, signal recogni 93.4 0.054 1.8E-06 48.7 4.0 25 225-249 12-36 (218)
412 3ly5_A ATP-dependent RNA helic 93.4 0.17 5.7E-06 47.5 7.5 18 226-243 92-109 (262)
413 2npi_A Protein CLP1; CLP1-PCF1 93.4 0.037 1.3E-06 56.8 3.1 29 221-249 134-162 (460)
414 2wsm_A Hydrogenase expression/ 93.4 0.057 2E-06 48.8 4.1 26 225-250 30-55 (221)
415 1wp9_A ATP-dependent RNA helic 93.4 0.33 1.1E-05 48.4 10.2 33 227-259 25-61 (494)
416 1fuu_A Yeast initiation factor 93.3 0.25 8.4E-06 48.4 9.0 18 226-243 59-76 (394)
417 3lxw_A GTPase IMAP family memb 93.3 0.26 8.8E-06 45.8 8.6 23 226-248 22-44 (247)
418 2v6i_A RNA helicase; membrane, 93.3 0.26 8.7E-06 49.9 9.2 22 225-246 2-24 (431)
419 1z2a_A RAS-related protein RAB 93.3 0.048 1.6E-06 46.4 3.2 22 227-248 7-28 (168)
420 3tmk_A Thymidylate kinase; pho 93.2 0.091 3.1E-06 48.3 5.2 29 225-253 5-33 (216)
421 1f2t_A RAD50 ABC-ATPase; DNA d 93.2 0.052 1.8E-06 46.7 3.4 24 226-249 24-47 (149)
422 2dpy_A FLII, flagellum-specifi 93.2 0.086 3E-06 53.7 5.4 30 223-252 155-184 (438)
423 2p5s_A RAS and EF-hand domain 93.2 0.055 1.9E-06 48.1 3.5 24 225-248 28-51 (199)
424 1kao_A RAP2A; GTP-binding prot 93.2 0.053 1.8E-06 45.9 3.3 22 227-248 5-26 (167)
425 1pui_A ENGB, probable GTP-bind 93.1 0.03 1E-06 50.1 1.8 28 221-248 22-49 (210)
426 3ux8_A Excinuclease ABC, A sub 93.1 0.15 5.1E-06 54.8 7.5 21 222-242 41-61 (670)
427 2wji_A Ferrous iron transport 93.1 0.049 1.7E-06 46.9 3.1 21 227-247 5-25 (165)
428 2gks_A Bifunctional SAT/APS ki 93.1 0.16 5.4E-06 53.3 7.4 38 225-262 372-412 (546)
429 2ce2_X GTPase HRAS; signaling 93.1 0.05 1.7E-06 45.9 3.1 22 227-248 5-26 (166)
430 2zej_A Dardarin, leucine-rich 93.1 0.042 1.4E-06 48.3 2.6 21 227-247 4-24 (184)
431 4a2p_A RIG-I, retinoic acid in 93.1 0.46 1.6E-05 48.9 10.9 23 226-248 23-45 (556)
432 2e87_A Hypothetical protein PH 93.0 0.47 1.6E-05 46.6 10.5 24 225-248 167-190 (357)
433 3fmp_B ATP-dependent RNA helic 93.0 0.3 1E-05 49.7 9.3 19 225-243 131-149 (479)
434 3v9p_A DTMP kinase, thymidylat 93.0 0.046 1.6E-06 50.7 2.8 24 226-249 26-49 (227)
435 2obl_A ESCN; ATPase, hydrolase 93.0 0.074 2.5E-06 52.5 4.4 29 224-252 70-98 (347)
436 1ek0_A Protein (GTP-binding pr 92.9 0.058 2E-06 45.9 3.2 22 227-248 5-26 (170)
437 1u8z_A RAS-related protein RAL 92.9 0.058 2E-06 45.7 3.2 23 226-248 5-27 (168)
438 3o8b_A HCV NS3 protease/helica 92.9 1.8 6.2E-05 46.3 15.3 35 224-258 231-265 (666)
439 2atv_A RERG, RAS-like estrogen 92.9 0.068 2.3E-06 47.2 3.7 24 225-248 28-51 (196)
440 2hf9_A Probable hydrogenase ni 92.9 0.12 4E-06 46.8 5.4 25 225-249 38-62 (226)
441 1z0j_A RAB-22, RAS-related pro 92.9 0.061 2.1E-06 45.8 3.3 23 227-249 8-30 (170)
442 2nzj_A GTP-binding protein REM 92.8 0.058 2E-06 46.3 3.1 22 226-247 5-26 (175)
443 2xzl_A ATP-dependent helicase 92.8 0.097 3.3E-06 57.5 5.6 21 227-247 377-397 (802)
444 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.062 2.1E-06 46.3 3.3 22 227-248 9-30 (177)
445 1z08_A RAS-related protein RAB 92.8 0.063 2.1E-06 45.8 3.3 22 227-248 8-29 (170)
446 2db3_A ATP-dependent RNA helic 92.8 0.42 1.5E-05 48.1 10.0 18 225-242 93-110 (434)
447 1ky3_A GTP-binding protein YPT 92.7 0.064 2.2E-06 46.2 3.3 23 226-248 9-31 (182)
448 1g16_A RAS-related protein SEC 92.7 0.06 2.1E-06 45.8 3.1 22 227-248 5-26 (170)
449 1upt_A ARL1, ADP-ribosylation 92.7 0.082 2.8E-06 45.1 3.9 24 225-248 7-30 (171)
450 3lv8_A DTMP kinase, thymidylat 92.7 0.076 2.6E-06 49.5 3.8 25 225-249 27-51 (236)
451 2qag_B Septin-6, protein NEDD5 92.7 0.065 2.2E-06 54.4 3.6 27 222-248 37-65 (427)
452 2p6r_A Afuhel308 helicase; pro 92.6 0.11 3.6E-06 56.1 5.4 19 225-243 40-58 (702)
453 1r2q_A RAS-related protein RAB 92.6 0.068 2.3E-06 45.4 3.2 22 227-248 8-29 (170)
454 1c1y_A RAS-related protein RAP 92.6 0.069 2.4E-06 45.3 3.2 22 227-248 5-26 (167)
455 2wjg_A FEOB, ferrous iron tran 92.5 0.065 2.2E-06 46.8 3.1 23 226-248 8-30 (188)
456 2lkc_A Translation initiation 92.5 0.088 3E-06 45.3 3.9 23 225-247 8-30 (178)
457 2b6h_A ADP-ribosylation factor 92.5 0.092 3.1E-06 46.5 4.1 24 224-247 28-51 (192)
458 1r8s_A ADP-ribosylation factor 92.5 0.072 2.5E-06 45.2 3.2 22 227-248 2-23 (164)
459 3q85_A GTP-binding protein REM 92.5 0.067 2.3E-06 45.6 3.1 21 227-247 4-24 (169)
460 3bc1_A RAS-related protein RAB 92.5 0.071 2.4E-06 46.4 3.2 23 226-248 12-34 (195)
461 3ld9_A DTMP kinase, thymidylat 92.5 0.09 3.1E-06 48.5 4.0 27 225-251 21-47 (223)
462 2erx_A GTP-binding protein DI- 92.5 0.07 2.4E-06 45.4 3.1 21 227-247 5-25 (172)
463 2y8e_A RAB-protein 6, GH09086P 92.3 0.072 2.5E-06 45.8 3.1 22 227-248 16-37 (179)
464 2gj8_A MNME, tRNA modification 92.3 0.075 2.6E-06 46.2 3.2 23 226-248 5-27 (172)
465 2vp4_A Deoxynucleoside kinase; 92.3 0.052 1.8E-06 50.0 2.2 24 225-248 20-43 (230)
466 4dsu_A GTPase KRAS, isoform 2B 92.3 0.079 2.7E-06 46.0 3.3 22 227-248 6-27 (189)
467 1z0f_A RAB14, member RAS oncog 92.3 0.079 2.7E-06 45.5 3.2 23 226-248 16-38 (179)
468 2hxs_A RAB-26, RAS-related pro 92.3 0.07 2.4E-06 46.0 2.9 22 226-247 7-28 (178)
469 1tq4_A IIGP1, interferon-induc 92.2 0.071 2.4E-06 53.9 3.2 22 226-247 70-91 (413)
470 2fn4_A P23, RAS-related protei 92.2 0.077 2.6E-06 45.7 3.1 23 226-248 10-32 (181)
471 3clv_A RAB5 protein, putative; 92.2 0.082 2.8E-06 46.3 3.3 24 225-248 7-30 (208)
472 1m7b_A RND3/RHOE small GTP-bin 92.2 0.076 2.6E-06 46.4 3.1 23 226-248 8-30 (184)
473 3con_A GTPase NRAS; structural 92.2 0.081 2.8E-06 46.3 3.2 22 227-248 23-44 (190)
474 2oil_A CATX-8, RAS-related pro 92.1 0.082 2.8E-06 46.4 3.2 22 227-248 27-48 (193)
475 2efe_B Small GTP-binding prote 92.1 0.085 2.9E-06 45.5 3.3 22 227-248 14-35 (181)
476 2a9k_A RAS-related protein RAL 92.1 0.084 2.9E-06 45.7 3.2 23 226-248 19-41 (187)
477 1svi_A GTP-binding protein YSX 92.1 0.11 3.7E-06 45.6 4.0 24 225-248 23-46 (195)
478 4tmk_A Protein (thymidylate ki 92.0 0.085 2.9E-06 48.3 3.3 24 226-249 4-27 (213)
479 1nij_A Hypothetical protein YJ 92.0 0.12 4.1E-06 50.2 4.5 23 227-249 6-28 (318)
480 2bme_A RAB4A, RAS-related prot 92.0 0.082 2.8E-06 45.9 3.1 23 226-248 11-33 (186)
481 3tw8_B RAS-related protein RAB 91.9 0.082 2.8E-06 45.5 2.9 22 226-247 10-31 (181)
482 3qks_A DNA double-strand break 91.9 0.094 3.2E-06 47.4 3.4 26 226-251 24-49 (203)
483 3kkq_A RAS-related protein M-R 91.8 0.094 3.2E-06 45.5 3.2 22 227-248 20-41 (183)
484 2g6b_A RAS-related protein RAB 91.8 0.095 3.2E-06 45.2 3.2 23 226-248 11-33 (180)
485 1mh1_A RAC1; GTP-binding, GTPa 91.8 0.096 3.3E-06 45.3 3.2 22 227-248 7-28 (186)
486 3oiy_A Reverse gyrase helicase 91.8 0.15 5.2E-06 50.8 5.1 21 226-246 37-57 (414)
487 3ice_A Transcription terminati 91.8 0.18 6.1E-06 50.5 5.4 27 223-249 172-198 (422)
488 1moz_A ARL1, ADP-ribosylation 91.7 0.093 3.2E-06 45.4 3.1 24 224-247 17-40 (183)
489 1m2o_B GTP-binding protein SAR 91.7 0.093 3.2E-06 46.3 3.1 22 226-247 24-45 (190)
490 2gf9_A RAS-related protein RAB 91.7 0.1 3.4E-06 45.8 3.2 22 227-248 24-45 (189)
491 1ko7_A HPR kinase/phosphatase; 91.7 0.13 4.3E-06 50.1 4.2 24 225-248 144-167 (314)
492 3fho_A ATP-dependent RNA helic 91.7 0.68 2.3E-05 47.7 10.0 24 225-248 158-182 (508)
493 3ihw_A Centg3; RAS, centaurin, 91.7 0.1 3.5E-06 45.9 3.3 22 227-248 22-43 (184)
494 1yqt_A RNAse L inhibitor; ATP- 91.6 0.11 3.8E-06 54.4 4.0 27 223-249 45-71 (538)
495 3tkl_A RAS-related protein RAB 91.6 0.1 3.5E-06 45.7 3.2 22 227-248 18-39 (196)
496 3c5c_A RAS-like protein 12; GD 91.6 0.1 3.6E-06 45.8 3.3 22 227-248 23-44 (187)
497 4ag6_A VIRB4 ATPase, type IV s 91.6 0.18 6.2E-06 50.2 5.4 34 224-257 34-70 (392)
498 1fzq_A ADP-ribosylation factor 91.6 0.12 4.3E-06 45.0 3.8 24 225-248 16-39 (181)
499 3bwd_D RAC-like GTP-binding pr 91.6 0.11 3.6E-06 45.0 3.2 24 225-248 8-31 (182)
500 2bov_A RAla, RAS-related prote 91.5 0.1 3.6E-06 46.1 3.2 23 226-248 15-37 (206)
No 1
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-92 Score=717.95 Aligned_cols=437 Identities=68% Similarity=1.119 Sum_probs=355.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCccccccccccCCCccccCCCccCCchHHHHHHHHHHHHHHHHHH
Q 013281 1 MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLM 80 (446)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (446)
|||++|+|.++ ++++++++++||||| +|+++|+|||+ +||++++|||+|+|+++|++|++++++++|+|.+
T Consensus 1 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 71 (437)
T 4b4t_I 1 MGQGVSSGQDK-------KKKKGSNQKPKYEPP-VQSKFGRKKRK-GGPATAEKLPNIYPSTRCKLKLLRMERIKDHLLL 71 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCcc-------cccccccccccCCCC-CccccccccCC-CCcchhhcCcccCCcchhhHHHHHHHHHHHHHHH
Confidence 89998854321 233556789999998 89999987655 7999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEec
Q 013281 81 EEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN 160 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~ 160 (446)
|++++++++.+++.+++.++++++++.++++|+.+|++.+.+|+++++|+++++++|++.+.++++++.+.||++|.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~ 151 (437)
T 4b4t_I 72 EEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHH 151 (437)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECT
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHhhcCCCceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHH
Q 013281 161 KVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240 (446)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~ 240 (446)
.++.++++++.+.|+.++.|.+++.|.++|+||+|+++++++|++.|.+|+.+|++|..+|+.+|+|||||||||||||+
T Consensus 152 ~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTl 231 (437)
T 4b4t_I 152 KTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 231 (437)
T ss_dssp TTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHH
T ss_pred cCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHH
Q 013281 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (446)
Q Consensus 241 Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (446)
+|+|+|++++++|+.++++++.++|+|++++.++.+|..|+.++||||||||+|.++.+|.+...+++.+..+++.++|+
T Consensus 232 LAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~ 311 (437)
T 4b4t_I 232 LAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 311 (437)
T ss_dssp HHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988878888889999999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHH
Q 013281 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (446)
Q Consensus 321 ~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~d 400 (446)
++|++....+|+||+|||+++.||||++|||||++.|+|++|+.++|.+||+.|+.++++..+++++.||..|+||||+|
T Consensus 312 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGAD 391 (437)
T 4b4t_I 312 QLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGAD 391 (437)
T ss_dssp HHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHH
T ss_pred HhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhccCCCCCCCC
Q 013281 401 IKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 446 (446)
Q Consensus 401 i~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~~~~~~~~ 446 (446)
|.++|++|++.|+++++..|+++||..|+++++..+.+...++||+
T Consensus 392 I~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~e~le~lYl 437 (437)
T 4b4t_I 392 IQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL 437 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCCCSSSSCCC
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCChhhHHhhcC
Confidence 9999999999999999999999999999999999999999999996
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-69 Score=548.56 Aligned_cols=382 Identities=44% Similarity=0.750 Sum_probs=344.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch----hHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEeccc
Q 013281 58 VTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKP----QEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSV 133 (446)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (446)
+.+..++.++.+..++|++.....++..++..+++. ..++....+++++.++..|..+|++.+.+++++++|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~~~iv~~~~ 90 (405)
T 4b4t_J 11 VLETHESGIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQP 90 (405)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTSCEEEEESS
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCeEEEEeCC
Confidence 455556666666666666666555555444444333 3344455677888999999999999999999999999999
Q ss_pred CCceeEEecccccccccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCC
Q 013281 134 GPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTH 213 (446)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~ 213 (446)
+++|++++.++++.+.++||++|.++.+++.++.+++...+|.+..|...+.|.++|+||+|+++++++|+++|.+|+.+
T Consensus 91 ~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~ 170 (405)
T 4b4t_J 91 EGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKH 170 (405)
T ss_dssp SCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHC
T ss_pred CCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCc
Q 013281 214 PELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEI 293 (446)
Q Consensus 214 ~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEi 293 (446)
|++|..+|+.+|+|||||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+.++|||||||||
T Consensus 171 pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEi 250 (405)
T 4b4t_J 171 PELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI 250 (405)
T ss_dssp HHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred HHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHH
Q 013281 294 DAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (446)
Q Consensus 294 d~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 373 (446)
|+++++|.+..++++.+..+++.++|+++|++....+|+||+|||+++.||||++|||||++.|+|++|+.++|.+||+.
T Consensus 251 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 251 DSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp SCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred hhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHH
Confidence 99999998877777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhccC
Q 013281 374 HTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEG 439 (446)
Q Consensus 374 ~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~ 439 (446)
|+.++++..++++..||..|+||||+||.++|++|++.|+++++..|+++||..|+++++.+..+.
T Consensus 331 ~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 331 HSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp HHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccccc
Confidence 999999999999999999999999999999999999999999999999999999999998876654
No 3
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-68 Score=542.58 Aligned_cols=384 Identities=47% Similarity=0.803 Sum_probs=353.5
Q ss_pred CCccccCCCccCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeE
Q 013281 48 GPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHA 127 (446)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 127 (446)
+...+..++... .+++.++.+++++.+++.+|+++++++.+ ...+++...+++++.++..|+.+|++.+.+|++++
T Consensus 33 ~~~~~~~l~~~~--~dl~~~lk~le~~~~~L~~e~e~l~~~~~--~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~~~ 108 (428)
T 4b4t_K 33 TVNNNSALSNVN--SDIYFKLKKLEKEYELLTLQEDYIKDEQR--HLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTG 108 (428)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETTEE
T ss_pred ccchhhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCceeeEEEEEccCCee
Confidence 445566665554 48888999999999999999999887653 34566667788899999999999999999999999
Q ss_pred EEecccCCceeEEecccccccccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHh
Q 013281 128 IVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAV 207 (446)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i 207 (446)
+|.++++++|++++.+.++++.+.+|+.|.++..++.++.+++.++++.+..|..++.|.++|+||+|+++++++|++.|
T Consensus 109 iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v 188 (428)
T 4b4t_K 109 IVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAV 188 (428)
T ss_dssp EEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHH
T ss_pred EEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeE
Q 013281 208 ELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSI 287 (446)
Q Consensus 208 ~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~I 287 (446)
..|+.+|++|..+|+.+|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+.++|||
T Consensus 189 ~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~I 268 (428)
T 4b4t_K 189 ELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSI 268 (428)
T ss_dssp HHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcC-CCCHHH
Q 013281 288 VFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDIKT 366 (446)
Q Consensus 288 L~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~-~P~~~e 366 (446)
|||||+|.++..|.+...+++.+..+++.+||+++|++....+|+||+|||+++.||||++|||||++.|+|| +|+.++
T Consensus 269 ifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~ 348 (428)
T 4b4t_K 269 IFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE 348 (428)
T ss_dssp EEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHH
T ss_pred eechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHH
Confidence 9999999999999887777788889999999999999998899999999999999999999999999999997 899999
Q ss_pred HHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhh
Q 013281 367 RRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 367 r~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~ 435 (446)
|..||+.|+.++++..+++++.||..|+||||+||.++|++|++.|+++++..|+++||..|+.+++..
T Consensus 349 R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 349 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKT 417 (428)
T ss_dssp HHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999999999999999999999999999999987654
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-66 Score=534.66 Aligned_cols=369 Identities=41% Similarity=0.731 Sum_probs=337.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEec
Q 013281 63 KCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGIL 142 (446)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (446)
+++.++.+.++++..+...++ .++.++++....+++++.|+..|..+|++.+.+++++++|+++.|+.|++++.
T Consensus 59 ~~~~~l~~~~~~e~~~~~~~~------~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~ 132 (437)
T 4b4t_L 59 QFKRKLLEHRRYDDQLKQRRQ------NIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVR 132 (437)
T ss_dssp --------CHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEECBC
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEecc
Confidence 445555544454444433333 33334445555667799999999999999999999999999999999999999
Q ss_pred ccccccccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCC
Q 013281 143 SFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI 222 (446)
Q Consensus 143 ~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~ 222 (446)
+.++...+.+|+.|.++..++.++++++.+.+|.+..|.+++.|.++|+||+|+++++++|++.|.+|+.+|++|..+|+
T Consensus 133 ~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~ 212 (437)
T 4b4t_L 133 NSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI 212 (437)
T ss_dssp SSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_pred cccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD 302 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~ 302 (446)
.+|+|||||||||||||++|+|||++++++|+.++++++.++|+|++++.++.+|..|+.++||||||||+|.++.+|.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~ 292 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFS 292 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSS
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeeccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC
Q 013281 303 AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (446)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~ 382 (446)
.....+.+..+++.++|++++++....+|+||+|||+++.||||++|||||++.|+|++|+.++|.+||+.|+.++.+..
T Consensus 293 ~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~ 372 (437)
T 4b4t_L 293 EGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG 372 (437)
T ss_dssp SCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCS
T ss_pred CCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCc
Confidence 77777888999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhc
Q 013281 383 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 383 ~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~ 437 (446)
++|+..||..|+||||+||.++|++|++.|+++++..|+++||..|++++...++
T Consensus 373 d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 373 EFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp CCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred ccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999987554
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-65 Score=525.52 Aligned_cols=354 Identities=46% Similarity=0.799 Sum_probs=332.5
Q ss_pred cchhHHHHHHHHHHHHHhhCCCcccccccccccCC--------------------------eEEEecccCCceeEEeccc
Q 013281 91 LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN--------------------------HAIVSSSVGPEYYVGILSF 144 (446)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 144 (446)
.....+++.+.+++++.++..|+.++++.+.++.+ +++++++++..|++.+.++
T Consensus 55 ~~~~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_M 55 NNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGL 134 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCEEEECCC---------------------------CCSEEEEEETTSCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhhhhhhcccCceEEEEcCCCCeEEEecccc
Confidence 33445566667888999999999999999888753 6889999999999999999
Q ss_pred ccccccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCC
Q 013281 145 VDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKP 224 (446)
Q Consensus 145 ~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~ 224 (446)
++++.++||+.|.++.+++.++++++.++|+.+..|..+..|.++|+||+|+++++++|++.|.+|+.+|++|.++|+.+
T Consensus 135 ~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~ 214 (434)
T 4b4t_M 135 VDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA 214 (434)
T ss_dssp SCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC
T ss_pred cCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~ 304 (446)
|+|||||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+.++||||||||+|.++++|.+..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~ 294 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE 294 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCcc
Q 013281 305 SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV 384 (446)
Q Consensus 305 ~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~ 384 (446)
.++..+..+++.++|+.++++....+|+||+|||+++.||||++|||||++.|+|++|+.++|.+||+.|+.++.+..++
T Consensus 295 ~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv 374 (434)
T 4b4t_M 295 KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI 374 (434)
T ss_dssp GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC
T ss_pred CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC
Confidence 77788899999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhccCCCCCCCC
Q 013281 385 NLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 446 (446)
Q Consensus 385 ~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~~~~~~~~~ 446 (446)
+++.||..|+||||+||+++|++|++.|+++++..|+++||..|++++..+++..+ .+|.
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~~~i--~~Ya 434 (434)
T 4b4t_M 375 NWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKSV--SFYA 434 (434)
T ss_dssp CHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCCCCC--CCCC
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCCcCc--cccC
Confidence 99999999999999999999999999999999999999999999999988776654 5663
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-63 Score=504.28 Aligned_cols=315 Identities=47% Similarity=0.819 Sum_probs=305.4
Q ss_pred cCCeEEEecccCCceeEEecccccccccCCcceEEEecchhhhhhccccccchhhhhhhcccCCCCCcccccCcHHHHHH
Q 013281 123 DENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQE 202 (446)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~i~~ 202 (446)
++..+++..+.+.+|+|++.+.++++.++||++|.+++.++.++.+++.+.||++..|.+++.|.++|+||+|+++++++
T Consensus 141 ~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~ 220 (467)
T 4b4t_H 141 EDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEK 220 (467)
T ss_dssp CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHH
T ss_pred CCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhh
Q 013281 203 IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 282 (446)
Q Consensus 203 l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~ 282 (446)
|++.|.+|+.+|++|..+|+.+|+|||||||||||||++|+|||++++++|+.++++++.++|+|++++.++.+|..|+.
T Consensus 221 L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 221 LREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMART 300 (467)
T ss_dssp HHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCC
Q 013281 283 LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 283 ~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P 362 (446)
++||||||||+|.++.+|.+..++......++++++|++++++....+|+||+|||+++.||+|++|||||++.|+|++|
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP 380 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc
Confidence 99999999999999999988877878889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhc
Q 013281 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 363 ~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~ 437 (446)
+.++|.+||+.|+.++.+..+++++.||..|+||||+||+++|++|++.|+++++..|+++||..|+++++...+
T Consensus 381 d~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 381 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp CHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.3e-46 Score=408.64 Aligned_cols=253 Identities=38% Similarity=0.675 Sum_probs=196.1
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
..|.++|+||+|+++++++|++.|.+|+.+|++|.++|+.+++++|||||||||||++|+++|++++.+|+.++++++++
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l 343 (446)
+|+|++++.++.+|..|+.++||||||||||.+++.|.....+++....+++.+||.+||++....+|+||+|||+++.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999886544444455668899999999999888899999999999999
Q ss_pred ChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-------
Q 013281 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER------- 416 (446)
Q Consensus 344 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~------- 416 (446)
|++++|||||++.|+|++|+.++|.+||+.+++++++..+++++.||..|+||||+||.++|++|++.|+++.
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~ 709 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 709 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ------------------CCCccHHHHHHHHHHHHhhh
Q 013281 417 ------------------RMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 417 ------------------~~~It~~d~~~A~~~v~~~~ 436 (446)
...|+++||.+|++++..+-
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 710 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp ------------------CCC----CCTTTC-------
T ss_pred hhhhccCccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 12589999999999886553
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-43 Score=387.20 Aligned_cols=249 Identities=46% Similarity=0.751 Sum_probs=230.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
...|.++|+||+|+++++++|++.|.+|+.+|++|..+|+.+|+|||||||||||||+||++||++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 263 ~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
++|+|+++..++.+|..|+.++||||||||||.|++++.+...... .+.+.+||..++++....+|+||+|||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~---~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE---RRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTH---HHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHH---HHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999988865443333 4567778888888887889999999999999
Q ss_pred CChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------
Q 013281 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER------ 416 (446)
Q Consensus 343 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~------ 416 (446)
+|++++|||||++.|+|+.|+..+|.+||+.|+.++.+..++++..||..|.||+++||.++|++|++.|+++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred -----------CCCccHHHHHHHHHHHHh
Q 013281 417 -----------RMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 417 -----------~~~It~~d~~~A~~~v~~ 434 (446)
...|+.+||..|+..+..
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCC
Confidence 235788999999877654
No 9
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.8e-39 Score=316.15 Aligned_cols=261 Identities=61% Similarity=0.994 Sum_probs=245.1
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.+.....|..+|++|+|++++++.|.+.+..++.++++|..+|+.++.++||+||||||||++|+++|+.++.+|+.+++
T Consensus 5 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 5 AMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred cccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
+++...+.+.....+..+|..+....|+||||||+|.++.++.+...+...+.+..+..+++.++++....+++||+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999988877777778889999999999998887778999999999
Q ss_pred CCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 013281 339 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRM 418 (446)
Q Consensus 339 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~ 418 (446)
.++.+++++++++||+..+.|+.|+.++|.+|++.++....+..+.++..++..+.|+++++|+++|+.|...|+.+...
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~ 244 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhhccC
Q 013281 419 KVTHTDFKKAKEKVMFKKKEG 439 (446)
Q Consensus 419 ~It~~d~~~A~~~v~~~~~~~ 439 (446)
.|+.+||..|++.+...+...
T Consensus 245 ~I~~~d~~~al~~~~~~~~~~ 265 (285)
T 3h4m_A 245 YVTMDDFRKAVEKIMEKKKVK 265 (285)
T ss_dssp SBCHHHHHHHHHHHHHHHCCC
T ss_pred cCCHHHHHHHHHHHHhccccc
Confidence 999999999999998766543
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=5.3e-40 Score=323.85 Aligned_cols=251 Identities=38% Similarity=0.684 Sum_probs=222.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
...|..+|+||+|++.+++.|++.+..|+.+|+.|..+++.+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 263 ~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
..++|.....++.+|..+....|+||||||+|.+...+............+.+.++|..++++....+++||+|||+++.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 99999999999999999999999999999999998765432211111122445666777777666778999999999999
Q ss_pred CChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------
Q 013281 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER------ 416 (446)
Q Consensus 343 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~------ 416 (446)
++++++|+|||+..++|+.|+.++|.+|++.++....+..+++++.++..+.||+|+||+++|++|.+.|+++.
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~ 246 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999998888888999999999999999999999999999988652
Q ss_pred -------------------CCCccHHHHHHHHHHHH
Q 013281 417 -------------------RMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 417 -------------------~~~It~~d~~~A~~~v~ 433 (446)
...|+.+||..|++.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 247 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp -------------------CCCBCHHHHHHHHTTCC
T ss_pred hhhhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 13689999999988653
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.4e-38 Score=303.25 Aligned_cols=253 Identities=41% Similarity=0.715 Sum_probs=226.8
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~ 260 (446)
+.+..+..+|++|+|++.+++++.+.+.. +.+++.|..++...+++++|+||||||||++|+++|+.++.+|+.++++.
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 44567889999999999999999998876 78889999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+...+.+.....++.+|..+....|+++||||+|.++..+.....++..+..+.+..+|..++++....+++||++||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 99999999999999999999988899999999999987765444444555667788888888888777889999999999
Q ss_pred CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCc
Q 013281 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420 (446)
Q Consensus 341 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~I 420 (446)
+.+++++++++||++.++++.|+.++|.+|++.++....+..+.++..++..+.||+++||.++|++|...|..++...|
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i 240 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 240 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999988888888999999999999999999999999999999998999
Q ss_pred cHHHHHHHHHHHHh
Q 013281 421 THTDFKKAKEKVMF 434 (446)
Q Consensus 421 t~~d~~~A~~~v~~ 434 (446)
+.+||..|++.++.
T Consensus 241 ~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 241 SMVEFEKAKDKIMM 254 (257)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhc
Confidence 99999999998864
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1e-38 Score=331.73 Aligned_cols=249 Identities=46% Similarity=0.759 Sum_probs=226.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
.+..+|+||+|.+++++++++.+.. +.+++.|..+|...|+++||+||||||||+||+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5678999999999999999999886 788999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
++|.+...++.+|..|....|+||||||+|.++.++.....+.+.+..+++.++|..++++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99988899999999999999999999999999887755444556666788899999998887777899999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHH
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 424 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d 424 (446)
++++|||||++.+.|+.|+.++|.+|++.++...++..++++..++..+.|++++||.++|++|++.|.+++...|+.+|
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~d 248 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 99999999999999999999999999999999988888899999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHh
Q 013281 425 FKKAKEKVMF 434 (446)
Q Consensus 425 ~~~A~~~v~~ 434 (446)
|..|+.+++.
T Consensus 249 l~~al~~v~~ 258 (476)
T 2ce7_A 249 FEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=315.07 Aligned_cols=247 Identities=39% Similarity=0.668 Sum_probs=209.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
.|.++|+||+|+++++++|++.+..|+.+++.|..+++..++|++|+||||||||+|++++|..++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
+.++..+.++.+|..+....|+++|+||+|.++..+.... .....+.+.+++.++++...+..++++++||+++.+|
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 8888888999999999888999999999999876543211 1122356678888899887778899999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc---CCCCCccCHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHhC---
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR---MTLADDVNLEEFVMTK--DEFSGADIKAICTEAGLLALRER--- 416 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~---~~~~~~~~l~~la~~t--~g~s~~di~~l~~~A~~~Al~~~--- 416 (446)
++++|||||++.|+++.|+.++|.+||+.++.. ..+..++++..+|..+ +||||+||.++|++|++.|+++.
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 4456789999999875 59999999999999999998752
Q ss_pred --------CCCccHHHHHHHHHHHHh
Q 013281 417 --------RMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 417 --------~~~It~~d~~~A~~~v~~ 434 (446)
...|+++||..|++++..
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcC
Confidence 347999999999987654
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.6e-38 Score=311.05 Aligned_cols=227 Identities=36% Similarity=0.624 Sum_probs=204.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEechhh
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSEL 261 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-~~~~i~v~~s~l 261 (446)
...|.++|+||+|++++++.|++.+..|+.+|++|.. +..+++++|||||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3567899999999999999999999999999999975 35778999999999999999999999999 889999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCC
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS-RGDVKVILATNRI 340 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-~~~v~vI~atn~~ 340 (446)
...|.|+.++.++.+|..+....|+||||||+|.++..+.... .....+.+.+++..++++.. ..+++||+|||++
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999987764432 23345667788888888753 5789999999999
Q ss_pred CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 341 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
+.++++++| ||+..+++++|+.++|.+||+.++...... .+.++..|+..+.||+|+||.++|++|.+.|+++
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999887654 6778999999999999999999999999999876
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.2e-37 Score=309.73 Aligned_cols=247 Identities=36% Similarity=0.606 Sum_probs=214.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
....|..+|++|+|++.+++.|++++..|+.+|++|.. +..+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 45778899999999999999999999999999999987 56778999999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCC
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRI 340 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~-~~~~v~vI~atn~~ 340 (446)
...|+|+.+..++.+|..+....|+||||||||.+...+.+....... +...+++..++++. ...+++||+|||.+
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTH---HHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHH---HHHHHHHHHhccccccCCceEEEEecCCh
Confidence 999999999999999999999999999999999998776544333333 34455566666553 45689999999999
Q ss_pred CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC--
Q 013281 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR-- 417 (446)
Q Consensus 341 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~-- 417 (446)
+.+++++++ ||+..+++++|+.++|.+||+.++...... .+.++..|+..+.||+++||.++|++|.+.|+++..
T Consensus 165 ~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 165 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp GGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred hhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999999887654 667899999999999999999999999999988631
Q ss_pred -----------------------------------------CCccHHHHHHHHHHHHh
Q 013281 418 -----------------------------------------MKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 418 -----------------------------------------~~It~~d~~~A~~~v~~ 434 (446)
..|+++||..|++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 300 (322)
T 3eie_A 243 THFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP 300 (322)
T ss_dssp EEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCC
T ss_pred hhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCC
Confidence 34999999999987644
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.3e-36 Score=306.42 Aligned_cols=228 Identities=36% Similarity=0.635 Sum_probs=192.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
....|..+|++|+|++.+++.|++++..|+.+|++|.. +..+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 44678899999999999999999999999999999987 66788999999999999999999999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCC
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS-RGDVKVILATNRI 340 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-~~~v~vI~atn~~ 340 (446)
...|.|.....++.+|..+....|+||||||+|.+...+...... ...+...++|..++++.. ..+++||++||++
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~---~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CT---HHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcch---HHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 999999999999999999999999999999999998766433222 233445556666665543 4679999999999
Q ss_pred CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 341 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
+.+++++++ ||+..+++++|+.++|..||+.++...... .+.++..|+..+.||+++||.++|++|.+.|+++
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999887653 5778999999999999999999999999999986
No 17
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-36 Score=316.89 Aligned_cols=249 Identities=43% Similarity=0.737 Sum_probs=229.4
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
+..+|+||+|+++++.++++.+.. +.++..|..+++..+++++|+||||||||+||++||..++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 678999999999999999998876 7788999999999999999999999999999999999999999999999999888
Q ss_pred cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCh
Q 013281 266 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDP 345 (446)
Q Consensus 266 ~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~ 345 (446)
++.....++.+|+.+....|+++||||||.++..+.....+...+..+++.++|..++++.....+++|++||+++.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888889999999988889999999999998766543334466777889999999999887788999999999999999
Q ss_pred hhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 013281 346 ALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425 (446)
Q Consensus 346 al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~ 425 (446)
+++|+|||++.+.|+.|+.++|.+||+.++....+..++++..++..+.|++++||.++|++|++.|.+++...|+++||
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl 264 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 264 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Confidence 99999999999999999999999999999988888889999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhh
Q 013281 426 KKAKEKVMFK 435 (446)
Q Consensus 426 ~~A~~~v~~~ 435 (446)
..|+.+++..
T Consensus 265 ~~al~~v~~~ 274 (499)
T 2dhr_A 265 EEAADRVMML 274 (499)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhcc
Confidence 9999998754
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3.2e-36 Score=314.98 Aligned_cols=249 Identities=46% Similarity=0.739 Sum_probs=223.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
.+..+|++|+|++.++++|++.+..++.++++|..+|+.++.++|||||||||||++|+++|++++.+|+.++|+++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
+.|+....++.+|..|....|+||||||||.++.++..........++. .|+..+++.....+++||+|||+++.++
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~---~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVS---QLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHH---HHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHH---HHHHHhhccccCCceEEEEecCCccccC
Confidence 9999999999999999999999999999999988764433333334444 4444455555667899999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC------
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRM------ 418 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~------ 418 (446)
++++++|||+..++|+.|+.++|.+||+.++..+.+..+.++..++..+.||+++||.++|++|++.|+++...
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~ 434 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999888899999999999999999999999999999987532
Q ss_pred -----------CccHHHHHHHHHHHHhhh
Q 013281 419 -----------KVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 419 -----------~It~~d~~~A~~~v~~~~ 436 (446)
.|+++||..|++.+....
T Consensus 435 ~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp SSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred cccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 489999999999876543
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=291.12 Aligned_cols=250 Identities=41% Similarity=0.647 Sum_probs=199.8
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
|..+|++|+|++.+++.|++.+.. +.+++.|..+|+..+.++|||||||||||++|+++|++++.+|+.++++.+...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999999887 7888999999999999999999999999999999999999999999999998888
Q ss_pred cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCC-CcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 266 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 266 ~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~-~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
.+.....++.+|..+....|+||||||+|.++..+.....+ ...+.+..+..++..+++.....+++||++||.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 88888889999999998889999999999998665332211 13445677888888888876677899999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccC--HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccH
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVN--LEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH 422 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~--l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~ 422 (446)
++++++|||+..++|+.|+.++|.+|++.++....+..+.+ +..++..+.|+++++|.++|++|...|.+++...|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999998877654433 4789999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHhhh
Q 013281 423 TDFKKAKEKVMFKK 436 (446)
Q Consensus 423 ~d~~~A~~~v~~~~ 436 (446)
+||..|++++....
T Consensus 240 ~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 240 LNFEYAVERVLAGT 253 (262)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCh
Confidence 99999999987643
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=6e-35 Score=280.08 Aligned_cols=246 Identities=43% Similarity=0.733 Sum_probs=216.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
...|..+|++++|++.++.++++.+.. +.++..+..+++..++|++|+||||||||+|++++++.++.+++.+++..+.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 456788999999999999999998776 6778889999999999999999999999999999999999999999999988
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 263 ~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
..+.+.....+..+|+.+....|+++||||+|.++..+.........+..+.+.+++..+++......++++++||.++.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 87777777788899999987789999999999998665432223345667778889999988777777899999999999
Q ss_pred CChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccH
Q 013281 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH 422 (446)
Q Consensus 343 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~ 422 (446)
+|++++|++||++.++|+.|+.++|.+||+.++....+..++++..++..+.|++++||.++|++|...|.+++...|+.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~ 246 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 246 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999988889999
Q ss_pred HHHHHHH
Q 013281 423 TDFKKAK 429 (446)
Q Consensus 423 ~d~~~A~ 429 (446)
+||.+|+
T Consensus 247 ~dl~~a~ 253 (254)
T 1ixz_A 247 KDLEEAA 253 (254)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999885
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.1e-35 Score=306.12 Aligned_cols=228 Identities=36% Similarity=0.632 Sum_probs=194.8
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEechh
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSE 260 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-~~~~i~v~~s~ 260 (446)
....|..+|+||+|++.+++.|++.+..|+.+|++|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 44578899999999999999999999999999999875 35678999999999999999999999999 88999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCC
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS-RGDVKVILATNR 339 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-~~~v~vI~atn~ 339 (446)
+.+.|+|..+..++.+|..+....|+||||||||.+++.+...... ...+.+.++|..++++.. ..+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE---AARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCG---GGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcccc---HHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998776544332 234566778888887653 578999999999
Q ss_pred CCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 013281 340 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 340 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~ 415 (446)
++.++++++| ||+..+++++|+.++|..||+.++...... .+.++..|+..+.||+|+||.++|++|.+.|+++
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999877653 5678999999999999999999999999999876
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.4e-33 Score=274.54 Aligned_cols=245 Identities=44% Similarity=0.736 Sum_probs=216.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
..|..+|++|+|.+++++++++.+.. +.++..+..+++..+++++|+||||||||+|+++++..+..+++.+++..+..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34778999999999999999998776 66788899999999999999999999999999999999999999999999888
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l 343 (446)
.+.+.....+..+|+.+....|+++||||+|.++..+.........+..+.+.+++.++++......++++++||.++.+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 77777777888999999877899999999999976553322223456678888999999987766778999999999999
Q ss_pred ChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHH
Q 013281 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 423 (446)
Q Consensus 344 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~ 423 (446)
|++++|++||++.++|+.|+.++|.+||+.++....+..++++..++..+.|++++||+++|++|...|.+++...|+.+
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~ 271 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 271 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHH
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999888888888999999999999999999999999999998888899999
Q ss_pred HHHHHH
Q 013281 424 DFKKAK 429 (446)
Q Consensus 424 d~~~A~ 429 (446)
||.+|+
T Consensus 272 dl~~a~ 277 (278)
T 1iy2_A 272 DLEEAA 277 (278)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999885
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=7.2e-34 Score=278.42 Aligned_cols=249 Identities=37% Similarity=0.609 Sum_probs=207.7
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~ 260 (446)
.+.+.+..+|++|+|.+.+++.+.+.+..|+.+|++|..++ .++.++||+||||||||++|+++|++++.+|+.+++++
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 45567889999999999999999999999999999988765 56789999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+...+.+.....++.+|..+....|+||||||+|.+...+...........+..++..+..........+++||++||.+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 99999999999999999999999999999999999987664433333344444444444433222223579999999999
Q ss_pred CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC---
Q 013281 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER--- 416 (446)
Q Consensus 341 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~--- 416 (446)
+.+++++++ ||+..++++.|+.++|..|++.++...... .+.++..++..+.|+++++|.++|++|...|+++.
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999998876543 45568899999999999999999999999999874
Q ss_pred ---------CCCccHHHHHHHHHHH
Q 013281 417 ---------RMKVTHTDFKKAKEKV 432 (446)
Q Consensus 417 ---------~~~It~~d~~~A~~~v 432 (446)
...|+.+||..|+..+
T Consensus 248 ~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 248 QVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp ------CCCCCCCCHHHHHHHTTSC
T ss_pred hcccccccccCCcCHHHHHHHHHHc
Confidence 2579999999998754
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=282.27 Aligned_cols=250 Identities=36% Similarity=0.607 Sum_probs=213.2
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~ 260 (446)
-....+..+|++|+|++.+++.|++.+..|+.++++|...+ .+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 34567889999999999999999999999999999887765 67889999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC--CCCCeEEEEEeC
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--SRGDVKVILATN 338 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~--~~~~v~vI~atn 338 (446)
+...+.|+....++.+|..+....|+||||||||.++..+.... .....+.+.++|..+++.. ...+++||+|||
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE---HESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc---chHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 99999999999999999999998999999999999987653222 2233455566677776653 246899999999
Q ss_pred CCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-
Q 013281 339 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER- 416 (446)
Q Consensus 339 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~- 416 (446)
.++.+++++++ ||+..++++.|+.++|.+|+..++...... .+.++..++..+.||+++||..+|++|...++++.
T Consensus 230 ~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 230 RPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp CGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred ChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 999999999999999999999998765543 45678899999999999999999999999998853
Q ss_pred -----------CCCccHHHHHHHHHHHHhhh
Q 013281 417 -----------RMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 417 -----------~~~It~~d~~~A~~~v~~~~ 436 (446)
...|+.+||..|+..+....
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGGGC
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 35799999999999886543
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=7.3e-33 Score=282.26 Aligned_cols=248 Identities=35% Similarity=0.605 Sum_probs=201.2
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s 259 (446)
..+...+..+|++|+|++.+++.|.+++..++.++++|..++ .++.++|||||||||||++|++||++++.+|+.++|+
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA 182 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH
Confidence 355677889999999999999999999999999999998876 4578999999999999999999999999999999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC--CCCeEEEEEe
Q 013281 260 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS--RGDVKVILAT 337 (446)
Q Consensus 260 ~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~vI~at 337 (446)
++...|.|.....++.+|..+....|+||||||||.++..+..........++ ..++..++++.. ..+++||+||
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~---~~ll~~l~~~~~~~~~~v~vI~at 259 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLK---TEFLIEFDGVQSAGDDRVLVMGAT 259 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHH---HHHHHHHHHHC-----CEEEEEEE
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHH---HHHHHHhhcccccCCCCEEEEEec
Confidence 99999999999999999999999999999999999998765433333333333 444554544332 4579999999
Q ss_pred CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh-
Q 013281 338 NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE- 415 (446)
Q Consensus 338 n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~- 415 (446)
|.++.+++++++ ||...++|+.|+.++|..||+.++...... .+.++..|+..+.|+++++|..+|..|...++++
T Consensus 260 n~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 260 NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp SCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred CCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 999999999999999999999998775543 4457889999999999999999999999999987
Q ss_pred -----------CCCCccHHHHHHHHHHHH
Q 013281 416 -----------RRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 416 -----------~~~~It~~d~~~A~~~v~ 433 (446)
....|+.+||..|++.+.
T Consensus 338 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 338 KPEQVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp CCC---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhhhhhccchhhcCCcCHHHHHHHHHHcC
Confidence 235799999999988643
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=2.8e-36 Score=291.25 Aligned_cols=251 Identities=43% Similarity=0.681 Sum_probs=214.6
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
+.+..+|++|+|.+++++.+.+.+.. +.+++.|..++...++++||+||||||||++|+++|++++.+|+.++++.+..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45678999999999999999998886 88899999999999999999999999999999999999999999999999998
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCC-CCCcHHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH-SGGEREIQRTMLELLNQLDGFDS-RGDVKVILATNRIE 341 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~-~~~v~vI~atn~~~ 341 (446)
.+.+.....++.+|..+....|+||||||+|.+...+.... ...+....+.+..++..++++.. ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 88888877788899999888999999999999976542111 01111122345667777776543 34599999999999
Q ss_pred CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCcc
Q 013281 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 421 (446)
Q Consensus 342 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It 421 (446)
.+++++++++||+..++|+.|+.++|.++|+.++....+..+.++..++..+.|++++||+++|++|...|..++...|+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999999888878888999999999999999999999999999887788999
Q ss_pred HHHHHHHHHHHHhh
Q 013281 422 HTDFKKAKEKVMFK 435 (446)
Q Consensus 422 ~~d~~~A~~~v~~~ 435 (446)
.+||..|+..+...
T Consensus 243 ~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 243 QQHLKEAVERGIAG 256 (268)
T ss_dssp HHHHHTSCTTCCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999988776543
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=8e-36 Score=329.53 Aligned_cols=233 Identities=40% Similarity=0.730 Sum_probs=208.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
..+..+|++++|++.+++.|.+++..|+.+++.|..+++.++.++||+||||||||+||+++|+.++.+|+.++++++.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l 343 (446)
.|+|+.+..++.+|..++...|+||||||||.++..+............+.+.++|..++++....+++||+|||+++.+
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999987775443333445678888999999998878899999999999999
Q ss_pred ChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 013281 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 416 (446)
Q Consensus 344 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~ 416 (446)
|++++|||||+..|+|+.|+.++|..||+.++....+..++++..++..+.|||++||.++|++|.+.|+++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888889999999999999999999999999999998864
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.4e-29 Score=279.62 Aligned_cols=247 Identities=45% Similarity=0.748 Sum_probs=220.1
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
..+.++|+||+|++.+++.|++.+..|+.+|++|..+++.++.+|||+||||||||+||+++|+.++.+|+.++++++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~l 343 (446)
.+.++....++.+|..+....|+++||||+|.++..+.... .....+.+..++..++++....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC---SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc---chHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 99999999999999999999999999999999987654322 222344555666667777777889999999999999
Q ss_pred ChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC------
Q 013281 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR------ 417 (446)
Q Consensus 344 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~------ 417 (446)
++++.+++||++.+.++.|+.++|.+|++.++..+.+..+.++..++..+.||+++++..+|.+|.+.++++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 99999999999999999999999999999999999988889999999999999999999999999999887642
Q ss_pred -----------CCccHHHHHHHHHHHH
Q 013281 418 -----------MKVTHTDFKKAKEKVM 433 (446)
Q Consensus 418 -----------~~It~~d~~~A~~~v~ 433 (446)
..++.+||..++....
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~ 460 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSC
T ss_pred hhccchhhhhhhhhhhhhhhccccccC
Confidence 3466778888776653
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.94 E-value=8e-27 Score=228.88 Aligned_cols=177 Identities=21% Similarity=0.311 Sum_probs=135.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHH----hhcCCeEEEEcCcccc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----DDLSPSIVFIDEIDAV 296 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a----~~~~p~IL~IDEid~l 296 (446)
+.++|.++|||||||||||++|+++|++++.+|++++++++.+.|+|..+..++.+|..| +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 667889999999999999999999999999999999999999999999999999999998 5678999999999999
Q ss_pred cccccCCC--CCCcHHHHHHHHHHHHHhc--------CCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHH
Q 013281 297 GTKRYDAH--SGGEREIQRTMLELLNQLD--------GFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKT 366 (446)
Q Consensus 297 ~~~r~~~~--~~~~~~~~~~l~~lL~~ld--------~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~e 366 (446)
++.+.... ......++..|+++|+... ......+++||+|||+++.+|++++|+|||++.++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 87543211 1234456677777765221 22245679999999999999999999999998887 469999
Q ss_pred HHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHH
Q 013281 367 RRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKA 403 (446)
Q Consensus 367 r~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~ 403 (446)
|.+|++.++... +++++.++..+.+|++++|..
T Consensus 190 r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 999999887643 566889999999999888763
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=4.3e-24 Score=221.94 Aligned_cols=110 Identities=25% Similarity=0.286 Sum_probs=94.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEechhhh
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELI 262 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~--~~~i~v~~s~l~ 262 (446)
.|...|++|+|++.+++.+.+.+... ..+..+++++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 34567899999999999988877642 22566788999999999999999999999999 899999999999
Q ss_pred hhhcCCchHHHHHHHHHH---hhcCCeEEEEcCcccccccccCC
Q 013281 263 QKYLGDGPKLVRELFRVA---DDLSPSIVFIDEIDAVGTKRYDA 303 (446)
Q Consensus 263 ~~~~g~~~~~v~~lf~~a---~~~~p~IL~IDEid~l~~~r~~~ 303 (446)
.+++|+.+. ++.+|..| +...|+||||||+|.++.++...
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCC
Confidence 999999887 89999999 77889999999999999887544
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=6.9e-23 Score=201.10 Aligned_cols=222 Identities=20% Similarity=0.248 Sum_probs=169.5
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCC---CceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEechhh
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKP---PKGVILYGEPGTGKTLLAKAVANST-------SATFLRVVGSEL 261 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~---~~~vLL~GppGtGKT~Laraia~~~-------~~~~i~v~~s~l 261 (446)
+|+|++.+++.|.+.+..+. .+..+.++|+.. +.++||+||||||||++|+++|+.+ ..+|+.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999998743 466666777654 3469999999999999999999987 348999999999
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
...+.|.....+..+|..+. ++||||||+|.++..+.+ .......+..|+.+++.. ..+++||++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN-----RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC-----TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC-----CCCEEEEEeCChHH
Confidence 99999998888888888873 589999999999754422 233556667777777642 45789999998643
Q ss_pred -----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHh-------CCCCcHHHHHHHHHHH
Q 013281 342 -----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMT-------KDEFSGADIKAICTEA 408 (446)
Q Consensus 342 -----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~-------t~g~s~~di~~l~~~A 408 (446)
.++|++++ ||+..++|+.|+.+++..|++.++...... .+..+..++.. ....+++++.++|..|
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 25789988 999999999999999999999999876543 22234555554 3334689999999999
Q ss_pred HHHHHHh----CCCCccHHHHH
Q 013281 409 GLLALRE----RRMKVTHTDFK 426 (446)
Q Consensus 409 ~~~Al~~----~~~~It~~d~~ 426 (446)
...+..+ ....++.+|+.
T Consensus 259 ~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 259 RLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHh
Confidence 8766554 33556666654
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=7.6e-22 Score=196.36 Aligned_cols=222 Identities=14% Similarity=0.100 Sum_probs=172.3
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~ 260 (446)
+.++..+.+|++++|.+.+++.+..++..... ...++.++||+||||||||++|+++|+.++.+|+.++|+.
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 45667778999999999999999998876311 1234568999999999999999999999999999999976
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC-------------CC
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------------DS 327 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~-------------~~ 327 (446)
+. ....+...+.. ...+++|||||||.+ ....+..|+.+++..... ..
T Consensus 91 ~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 91 IE------KSGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp CC------SHHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred cc------chhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 53 22333444432 235789999999999 456777888877653210 00
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHH
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICT 406 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~ 406 (446)
..++++|++||....+++++++ ||+..+.|+.|+.+++..++..++...... .+..+..++..+.| +++++.+++.
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~ 228 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLK 228 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHH
Confidence 1248999999999999999998 998999999999999999999998776543 33446777775555 7899999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHH
Q 013281 407 EAGLLALRERRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 407 ~A~~~Al~~~~~~It~~d~~~A~~~v 432 (446)
.|...|.......|+.+++..++...
T Consensus 229 ~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 229 RVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 99888887778889999998887653
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.89 E-value=5.3e-22 Score=199.48 Aligned_cols=220 Identities=20% Similarity=0.244 Sum_probs=160.8
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhhh
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQ 263 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~~ 263 (446)
|..+|++++|.+.+++.+...+... ..+..++.++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4455999999999988865544331 114445689999999999999999999999975 888888876433
Q ss_pred hhc-------------------------------------------------CCchHHHHHHHHHHhhc---------CC
Q 013281 264 KYL-------------------------------------------------GDGPKLVRELFRVADDL---------SP 285 (446)
Q Consensus 264 ~~~-------------------------------------------------g~~~~~v~~lf~~a~~~---------~p 285 (446)
.+. +.....++..|..+... .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 221 22233444555443321 26
Q ss_pred eEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe-----------CCCCCCChhhcCCCcee
Q 013281 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT-----------NRIESLDPALLRPGRID 354 (446)
Q Consensus 286 ~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at-----------n~~~~ld~al~r~gRf~ 354 (446)
+||||||+|.+ ..+.+..|+.+++. . ...++++++. |.+..+++++++ ||.
T Consensus 191 ~vl~IDEi~~l-----------~~~~~~~L~~~le~---~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHML-----------DIESFSFLNRALES---D--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGS-----------BHHHHHHHHHHTTC---T--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhcccc-----------ChHHHHHHHHHhhC---c--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 89999999999 44555655555532 1 2344444433 246789999999 997
Q ss_pred eEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013281 355 RKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 355 ~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v 432 (446)
. +.|++|+.+++..|++.++...... .+..++.++..+.+.+++++.++|..|...|..++...|+.+|+..|+..+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5 8999999999999999888764443 334577888888845999999999999999999999999999999998864
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=3.3e-21 Score=190.22 Aligned_cols=222 Identities=16% Similarity=0.143 Sum_probs=169.2
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
..+..+.+|++++|.+.+++.+.+.+.... . ....+.++||+||||||||++|+++|+.++.+|+.++|+.+
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 345667799999999999999999887521 0 11345689999999999999999999999999999998765
Q ss_pred hhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC-----CC--------CC
Q 013281 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG-----FD--------SR 328 (446)
Q Consensus 262 ~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~-----~~--------~~ 328 (446)
.. ...+...|..+ ...+++|||||+|.+ ....+..++.+++.... .. ..
T Consensus 75 ~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 75 EK------PGDLAAILANS-LEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp CS------HHHHHHHHTTT-CCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred CC------hHHHHHHHHHh-ccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 22 22222222221 145789999999998 45567778888775320 00 11
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHH
Q 013281 329 GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTE 407 (446)
Q Consensus 329 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~ 407 (446)
.++++|++||....+++++++ ||+..+.|+.|+.+++..++..++...... .+..+..++..+.| +++++.+++..
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 213 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRR 213 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 368899999999999999988 998899999999999999999988765543 23446788888866 78999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHH
Q 013281 408 AGLLALRERRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 408 A~~~Al~~~~~~It~~d~~~A~~~v 432 (446)
+...|.......|+.+++..++...
T Consensus 214 ~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 214 VRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 8877766667789999998877654
No 35
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.86 E-value=6.3e-23 Score=217.43 Aligned_cols=226 Identities=23% Similarity=0.330 Sum_probs=148.8
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-----
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ----- 263 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~----- 263 (446)
-..+++|++.+++.+.+.+....... .. ++.+++|+||||||||++|+++|..++.+|..++++.+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 34678999999999988776532111 11 4567999999999999999999999999999999876543
Q ss_pred ----hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc--CCC--------CCC
Q 013281 264 ----KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD--GFD--------SRG 329 (446)
Q Consensus 264 ----~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld--~~~--------~~~ 329 (446)
.|+|..+..+...|..+....| ||||||||.+...+ ....+..|+++|.... .+. ...
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~-------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF-------RGDPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh-------ccCHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 5677777777888888766565 99999999996443 1123344444443211 011 115
Q ss_pred CeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHc-----cCCCC------CccCHHHHHH-hCCCCc
Q 013281 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS-----RMTLA------DDVNLEEFVM-TKDEFS 397 (446)
Q Consensus 330 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~-----~~~~~------~~~~l~~la~-~t~g~s 397 (446)
+++||+|||.++.++++|++ ||. .|+|+.|+.+++..|++.++. ...+. .+..+..++. ++...+
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~ 300 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAG 300 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSS
T ss_pred ceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhc
Confidence 78999999999999999999 995 799999999999999998762 22221 1223455554 333344
Q ss_pred HHHHH----HHHHHHHHHHHHh--CCCCccHHHHHHHHHHH
Q 013281 398 GADIK----AICTEAGLLALRE--RRMKVTHTDFKKAKEKV 432 (446)
Q Consensus 398 ~~di~----~l~~~A~~~Al~~--~~~~It~~d~~~A~~~v 432 (446)
.++++ .+|..|...++.. ....|+.+|+.+++...
T Consensus 301 vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 301 VRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 45554 5555555555544 34579999999887643
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.84 E-value=1.6e-19 Score=166.54 Aligned_cols=206 Identities=19% Similarity=0.223 Sum_probs=155.4
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEE
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLR 255 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i~ 255 (446)
+.++.++.+|++++|.+..++.+.+++... ...+++|+||||||||++|+++++.+ ...++.
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 456678889999999999999999998762 22349999999999999999999975 356888
Q ss_pred EechhhhhhhcCCchHHHHHHHHHHh------hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCC
Q 013281 256 VVGSELIQKYLGDGPKLVRELFRVAD------DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329 (446)
Q Consensus 256 v~~s~l~~~~~g~~~~~v~~lf~~a~------~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 329 (446)
++++.... ...+...+.... ...+.+|||||+|.+ ....+..+..+++.. ..
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~-----~~ 131 (226)
T 2chg_A 74 MNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY-----SK 131 (226)
T ss_dssp EETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TT
T ss_pred eccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----CC
Confidence 88765322 122222222221 245789999999998 344566677777653 35
Q ss_pred CeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHH
Q 013281 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEA 408 (446)
Q Consensus 330 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A 408 (446)
++.+|++||.+..+++++.+ ||. .+.|++|+.++...++..++...... .+..+..++..+.| +++.+.+++..+
T Consensus 132 ~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~ 207 (226)
T 2chg_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (226)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 78899999999899999998 887 89999999999999999887654433 23346777777765 777777777776
Q ss_pred HHHHHHhCCCCccHHHHHHHHH
Q 013281 409 GLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 409 ~~~Al~~~~~~It~~d~~~A~~ 430 (446)
...+ ..|+.+|+..++.
T Consensus 208 ~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 208 AAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHTC-----SCBCHHHHHHHHH
T ss_pred HhcC-----ceecHHHHHHHhc
Confidence 6544 6899999998874
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=1.1e-20 Score=184.71 Aligned_cols=237 Identities=20% Similarity=0.275 Sum_probs=160.6
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhh-CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcCCc
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDI-GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDG 269 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~-g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-~~~g~~ 269 (446)
+|+|.+.+++.+..++..++....+...+ ....+.++||+||||||||++|+++|+.++.+++.++|+.+.. .|++..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 48999999999999887633222211111 1134678999999999999999999999999999999998875 455432
Q ss_pred -hHHHHHHHHHH-----hhcCCeEEEEcCcccccccccCCCCCCcH---HHHHHHHHHHHHhc-----CCCCCCCeEEEE
Q 013281 270 -PKLVRELFRVA-----DDLSPSIVFIDEIDAVGTKRYDAHSGGER---EIQRTMLELLNQLD-----GFDSRGDVKVIL 335 (446)
Q Consensus 270 -~~~v~~lf~~a-----~~~~p~IL~IDEid~l~~~r~~~~~~~~~---~~~~~l~~lL~~ld-----~~~~~~~v~vI~ 335 (446)
...+..++..+ ....++||||||+|.+....... +.+. .++..|+.+++... +.....+++||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 34566666532 11235899999999997554221 1111 22555555555310 001234788998
Q ss_pred Ee----CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHH-----------ccCCC---CCccCHHHHHHhCC---
Q 013281 336 AT----NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT-----------SRMTL---ADDVNLEEFVMTKD--- 394 (446)
Q Consensus 336 at----n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~-----------~~~~~---~~~~~l~~la~~t~--- 394 (446)
++ +.+..+++++++ ||+..+.|++|+.+++..|++.+. ..... -++..++.|+....
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 85 466789999998 999889999999999999998311 11221 12334666776652
Q ss_pred ----CCcHHHHHHHHHHHHHHHHHhCC------CCccHHHHHHHHHHH
Q 013281 395 ----EFSGADIKAICTEAGLLALRERR------MKVTHTDFKKAKEKV 432 (446)
Q Consensus 395 ----g~s~~di~~l~~~A~~~Al~~~~------~~It~~d~~~A~~~v 432 (446)
+.+.+.+.++|..+...+..+.. ..|+.+|+..|+...
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 45889999999987755443221 149999999987754
No 38
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.84 E-value=1.3e-19 Score=182.10 Aligned_cols=225 Identities=19% Similarity=0.220 Sum_probs=164.9
Q ss_pred CcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEech
Q 013281 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGS 259 (446)
Q Consensus 189 ~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s 259 (446)
..++++|.+..++.+..++...+. ...+.+++|+||||||||++|+++++.+ +..|+.++|.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 347899999999999998865322 1346689999999999999999999988 7889999987
Q ss_pred hhhhh----------------hcCCch-HHHHHHHHHHhhc-CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHH
Q 013281 260 ELIQK----------------YLGDGP-KLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ 321 (446)
Q Consensus 260 ~l~~~----------------~~g~~~-~~v~~lf~~a~~~-~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ 321 (446)
..... ..+... .....++...... .|.+|||||+|.+...+ ..+..+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 53211 112222 2344455544433 37899999999994221 145677777776
Q ss_pred hcCCCCCCCeEEEEEeCCC---CCCChhhcCCCceee-EEEcCCCCHHHHHHHHHHHHcc--CCC-CCccCHHHHHHhCC
Q 013281 322 LDGFDSRGDVKVILATNRI---ESLDPALLRPGRIDR-KIEFPLPDIKTRRRIFQIHTSR--MTL-ADDVNLEEFVMTKD 394 (446)
Q Consensus 322 ld~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~~~~--~~~-~~~~~l~~la~~t~ 394 (446)
+.......++.+|++||.+ +.+++.+.+ ||.. .+.|++|+.++...|+..++.. ... ..+..++.++..+.
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 6543224678999999987 678899988 8864 8999999999999999988764 111 12334667777766
Q ss_pred ---CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 013281 395 ---EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMF 434 (446)
Q Consensus 395 ---g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~ 434 (446)
| +++.+.++|..|...|..++...|+.+|+..|+..+..
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 5 78889999999999998888889999999999987643
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.82 E-value=1.3e-19 Score=187.42 Aligned_cols=208 Identities=21% Similarity=0.245 Sum_probs=156.2
Q ss_pred cccCCCCCcccccCcHHHH---HHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 182 VEKAPLESYADIGGLDAQI---QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~i---~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.+...+.+|++++|.+..+ ..|...+... ...++|||||||||||++|++||+.++.+|+.+++
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 3455678999999999999 7888888762 12579999999999999999999999999999987
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 013281 259 SELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVI 334 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI 334 (446)
.. .+...++.+|..+.. ..++||||||||.+. ...+..|+..++. +.+++|
T Consensus 84 ~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~-----------~~~q~~LL~~le~-------~~v~lI 138 (447)
T 3pvs_A 84 VT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFN-----------KSQQDAFLPHIED-------GTITFI 138 (447)
T ss_dssp TT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCEEE
T ss_pred cc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC-----------HHHHHHHHHHHhc-------CceEEE
Confidence 54 233455666665543 357899999999993 3345556666653 457888
Q ss_pred EEe--CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC-------C-CCccCHHHHHHhCCCCcHHHHHHH
Q 013281 335 LAT--NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT-------L-ADDVNLEEFVMTKDEFSGADIKAI 404 (446)
Q Consensus 335 ~at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~-------~-~~~~~l~~la~~t~g~s~~di~~l 404 (446)
++| |....+++++++ |+. .+.|+.|+.++...++..++.... + -++..++.|+..+.| +.+.+.++
T Consensus 139 ~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~ 214 (447)
T 3pvs_A 139 GATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNT 214 (447)
T ss_dssp EEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHH
T ss_pred ecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHH
Confidence 887 445679999999 986 788999999999999999887622 1 123346778888665 78899999
Q ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHH
Q 013281 405 CTEAGLLALRE--RRMKVTHTDFKKAKEK 431 (446)
Q Consensus 405 ~~~A~~~Al~~--~~~~It~~d~~~A~~~ 431 (446)
|..|...+... +...||.+++..++..
T Consensus 215 Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 215 LEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 99888776422 3457999999888764
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.82 E-value=2e-19 Score=181.21 Aligned_cols=234 Identities=18% Similarity=0.228 Sum_probs=157.5
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhh--hhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh-hcCCc
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYE--DIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK-YLGDG 269 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~--~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~-~~g~~ 269 (446)
|+|++.+++.+..++........... .....++.++||+||||||||++|+++|+.++.+|+.++|+.+... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 69999999999998853211110000 0011356789999999999999999999999999999999988753 66654
Q ss_pred -hHHHHHHHHHH----hhcCCeEEEEcCcccccccccCCCCCCcHH---HHHHHHHHHHHhc-------C---------C
Q 013281 270 -PKLVRELFRVA----DDLSPSIVFIDEIDAVGTKRYDAHSGGERE---IQRTMLELLNQLD-------G---------F 325 (446)
Q Consensus 270 -~~~v~~lf~~a----~~~~p~IL~IDEid~l~~~r~~~~~~~~~~---~~~~l~~lL~~ld-------~---------~ 325 (446)
...+..+|..+ ....++||||||+|.+...+.+...+.+.. ++..|+.+|+... + +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 45667777665 334578999999999987654433333322 5666666665100 0 1
Q ss_pred CCCCCeEEEEEeCCC----------CC-----------------------------------CChhhcCCCceeeEEEcC
Q 013281 326 DSRGDVKVILATNRI----------ES-----------------------------------LDPALLRPGRIDRKIEFP 360 (446)
Q Consensus 326 ~~~~~v~vI~atn~~----------~~-----------------------------------ld~al~r~gRf~~~i~~~ 360 (446)
-...++.+|+++|.. .. +.|+|+. ||+..+.|+
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 123466777777642 11 6888887 999999999
Q ss_pred CCCHHHHHHHHHH----HHc-------cCCCC---CccCHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHhCCC------
Q 013281 361 LPDIKTRRRIFQI----HTS-------RMTLA---DDVNLEEFVM--TKDEFSGADIKAICTEAGLLALRERRM------ 418 (446)
Q Consensus 361 ~P~~~er~~Il~~----~~~-------~~~~~---~~~~l~~la~--~t~g~s~~di~~l~~~A~~~Al~~~~~------ 418 (446)
+|+.+++.+|+.. ++. ..... .+..++.|+. ....+..++|+++++.+...++.+...
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~ 334 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEK 334 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCce
Confidence 9999999998875 211 11221 2233566664 345567799999999999888876421
Q ss_pred -CccHHHHHHH
Q 013281 419 -KVTHTDFKKA 428 (446)
Q Consensus 419 -~It~~d~~~A 428 (446)
.|+.+++.+.
T Consensus 335 ~~I~~~~v~~~ 345 (363)
T 3hws_A 335 VVIDESVIDGQ 345 (363)
T ss_dssp EECHHHHTTCC
T ss_pred eEEcHHHHhCc
Confidence 4666666544
No 41
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.82 E-value=4e-19 Score=176.98 Aligned_cols=227 Identities=17% Similarity=0.216 Sum_probs=151.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------c---
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-------T--- 252 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~-------~--- 252 (446)
...+..+|++++|.+..++.+...+..+ ...++||+||||||||++|+++|+.++. +
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~ 82 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSS 82 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccc
Confidence 3456789999999999877655444321 2346999999999999999999998863 1
Q ss_pred -----------------------EEEEechhhhhhhcCCchHHHHHHHHHH---------hhcCCeEEEEcCcccccccc
Q 013281 253 -----------------------FLRVVGSELIQKYLGDGPKLVRELFRVA---------DDLSPSIVFIDEIDAVGTKR 300 (446)
Q Consensus 253 -----------------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a---------~~~~p~IL~IDEid~l~~~r 300 (446)
++.+..........|... +...+..+ ....++||||||+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l---- 156 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLL---- 156 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS----
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhC----
Confidence 221111100111111100 01111111 0113689999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHh----cCCC----CCCCeEEEEEeCCCC-CCChhhcCCCceeeEEEcCCC-CHHHHHHH
Q 013281 301 YDAHSGGEREIQRTMLELLNQL----DGFD----SRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLP-DIKTRRRI 370 (446)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~l----d~~~----~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P-~~~er~~I 370 (446)
....+..|+.+++.- .... ...++++|+|||..+ .+++++++ ||+..+.++.| +.+++.+|
T Consensus 157 -------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 157 -------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp -------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred -------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 556778888888752 1110 013789999999754 89999999 99988999999 67777788
Q ss_pred HHHHHc-------------------------------cCCCCCccCHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHhC
Q 013281 371 FQIHTS-------------------------------RMTLADDVNLEEFVMTKDE---FSGADIKAICTEAGLLALRER 416 (446)
Q Consensus 371 l~~~~~-------------------------------~~~~~~~~~l~~la~~t~g---~s~~di~~l~~~A~~~Al~~~ 416 (446)
++.++. ...+ ++..++.|+....+ -+.+.+.++++.|...|..++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 865311 1122 22234455544432 267999999999999999989
Q ss_pred CCCccHHHHHHHHHHHHhhhcc
Q 013281 417 RMKVTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 417 ~~~It~~d~~~A~~~v~~~~~~ 438 (446)
+..|+.+|+..|+..++.+.-.
T Consensus 307 ~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 307 ATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp CSBCCHHHHHHHHHHHHGGGCC
T ss_pred CCcCCHHHHHHHHHHHHhhccc
Confidence 8899999999999998876544
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.81 E-value=2.3e-19 Score=173.32 Aligned_cols=221 Identities=15% Similarity=0.166 Sum_probs=145.5
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCch
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGP 270 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~ 270 (446)
..++|.+..++.+....... ...+...+..++.++||+||||||||++|+++|+.++.+|+.+++++. +.|...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCch
Confidence 45788888877776642110 011222245667899999999999999999999999999999988763 333332
Q ss_pred ----HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCh
Q 013281 271 ----KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRIESLDP 345 (446)
Q Consensus 271 ----~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~-~~~~v~vI~atn~~~~ld~ 345 (446)
..++.+|..+....+++|||||+|.++..+... ......+...|..+ +++.. ...+++||+|||.++.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~---~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVL---LKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHH---TTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHH---hcCccCCCCCEEEEEecCChhhcch
Confidence 456788888877778999999999997554211 22233344444443 33332 2346889999999887877
Q ss_pred -hhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCC----cHHHHHHHHHHHHHHHHHhCCCCc
Q 013281 346 -ALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEF----SGADIKAICTEAGLLALRERRMKV 420 (446)
Q Consensus 346 -al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~----s~~di~~l~~~A~~~Al~~~~~~I 420 (446)
.+.+ ||...+.+|.++. |.+|.........+ .+.++..++..+.|+ +.+++.+++..|...+ ...
T Consensus 183 ~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~ 252 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEY 252 (272)
T ss_dssp TTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGG
T ss_pred hhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHH
Confidence 4554 9998888877665 23333333322233 455688899998886 5677777777664322 334
Q ss_pred cHHHHHHHHHH
Q 013281 421 THTDFKKAKEK 431 (446)
Q Consensus 421 t~~d~~~A~~~ 431 (446)
..++|..+++.
T Consensus 253 ~~~~~~~~l~~ 263 (272)
T 1d2n_A 253 RVRKFLALLRE 263 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666665543
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.81 E-value=3.7e-19 Score=175.93 Aligned_cols=208 Identities=18% Similarity=0.188 Sum_probs=147.5
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
..+.+++.+.+|++++|.+.+++.+.+++... ..+..+|++||||||||++|+++|+.++.+++.+++
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 45778889999999999999999999999851 345678889999999999999999999999999998
Q ss_pred hhhhhhhcCCchHHHHHHHHHHhhc-----CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEE
Q 013281 259 SELIQKYLGDGPKLVRELFRVADDL-----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKV 333 (446)
Q Consensus 259 s~l~~~~~g~~~~~v~~lf~~a~~~-----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~v 333 (446)
+... ...++..+..+... .++||||||+|.+. ..+.+..|..+++.. ..++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~----------~~~~~~~L~~~le~~-----~~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG----------LAESQRHLRSFMEAY-----SSNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG----------GHHHHHHHHHHHHHH-----GGGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC----------cHHHHHHHHHHHHhC-----CCCcEE
Confidence 7632 33444444332222 46899999999993 155677888888754 246889
Q ss_pred EEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHH-------ccCCCC-Cc-cCHHHHHHhCCCCcHHHHHHH
Q 013281 334 ILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT-------SRMTLA-DD-VNLEEFVMTKDEFSGADIKAI 404 (446)
Q Consensus 334 I~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~-------~~~~~~-~~-~~l~~la~~t~g~s~~di~~l 404 (446)
|++||.+..+++++++ ||. .+.|+.|+.+++.+|++.+. ....+. .+ ..+..++..+.| +.+++.+.
T Consensus 140 I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHH
Confidence 9999999999999998 995 79999999999776655432 222222 23 446778887665 44555555
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHH
Q 013281 405 CTEAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 405 ~~~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
+..+. ....|+.+++..++.
T Consensus 216 L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 216 LDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHG------GGTCBCC--------
T ss_pred HHHHh------ccCCCCHHHHHHHhC
Confidence 55443 223477776665443
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.81 E-value=6.3e-19 Score=174.90 Aligned_cols=217 Identities=17% Similarity=0.176 Sum_probs=156.9
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh------
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE------ 260 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~------ 260 (446)
+..+.+++|.+.+++.+..++.. +.++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhh
Confidence 34567899999999998887764 357999999999999999999999999999998742
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcC---CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc----C--CCCCCCe
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLS---PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----G--FDSRGDV 331 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~---p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~--~~~~~~v 331 (446)
+.+....... ...|. .... .+||||||+|.+ ....+..|++.+++-. + .....++
T Consensus 88 l~g~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 88 LIGTMIYNQH---KGNFE--VKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp HHEEEEEETT---TTEEE--EEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSC
T ss_pred cCCceeecCC---CCceE--eccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCE
Confidence 2221110000 00000 0011 279999999998 5567788888887531 1 1123467
Q ss_pred EEEEEeCCCC-----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-----------------------Cc
Q 013281 332 KVILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-----------------------DD 383 (446)
Q Consensus 332 ~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-----------------------~~ 383 (446)
+||+|+|..+ .+++++++ ||...+.++.|+.+++.+|++.++...... ++
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~ 229 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISE 229 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCH
T ss_pred EEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCH
Confidence 8888888543 38999999 998889999999999999999887643211 11
Q ss_pred cCHHHHHHh-------------------CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 013281 384 VNLEEFVMT-------------------KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 384 ~~l~~la~~-------------------t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~ 436 (446)
..++.++.. ..|.|++.+.++++.|...|..+++..|+.+|+..|+..++.+.
T Consensus 230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 112333321 12568999999999999999999999999999999999887654
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.80 E-value=3.1e-18 Score=159.63 Aligned_cols=207 Identities=17% Similarity=0.234 Sum_probs=152.5
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
+.+++.+..|++++|.+..++.+.+.+... ..+..++|+||||||||++|+++++.+...
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456677888999999999999999988752 234579999999999999999999977432
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.+.... ......+..++..+. ...+.+|+|||+|.+ +...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~~ 143 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSF 143 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHHH
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHHH
Confidence 22222211 011233445555432 224789999999998 34455
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..++.++.. ...++.+|++||.+..+++++.+ |+ ..+++++|+.++..+++..++...... .+..+..++.
T Consensus 144 ~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 215 (250)
T 1njg_A 144 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 215 (250)
T ss_dssp HHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 666666542 24578999999998889999988 76 589999999999999999888654433 3344778888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
.+.| +++.+.++|..|... ....|+.+|+.+++
T Consensus 216 ~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 216 AAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 8877 889999999887533 23489999998875
No 46
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=1.6e-18 Score=172.73 Aligned_cols=213 Identities=18% Similarity=0.190 Sum_probs=157.0
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC------Cc
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS------AT 252 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~------~~ 252 (446)
..+.+++.+.+|++++|.+.+++.+..++... ...++||+||||||||++|+++|+.+. ..
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 45777888999999999999999999988752 123499999999999999999999864 35
Q ss_pred EEEEechhhhhhhcCCchHHHHHHHHHHh----------------hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHH
Q 013281 253 FLRVVGSELIQKYLGDGPKLVRELFRVAD----------------DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML 316 (446)
Q Consensus 253 ~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----------------~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~ 316 (446)
++.+++++... ...++..+.... ...+.||||||+|.+ ....+..|+
T Consensus 92 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~Ll 154 (353)
T 1sxj_D 92 ILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSALR 154 (353)
T ss_dssp EEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHHH
T ss_pred eEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHHH
Confidence 78887765321 112222111111 124569999999999 445677777
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCC
Q 013281 317 ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDE 395 (446)
Q Consensus 317 ~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g 395 (446)
.++++. ..++.+|++||.+..+.+++++ |+. .+.|++|+.++...++...+....+. ++..+..++..+.|
T Consensus 155 ~~le~~-----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 155 RTMETY-----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp HHHHHT-----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred HHHHhc-----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 777754 3467888899999999999998 886 89999999999999999887654433 33457788888886
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHH
Q 013281 396 FSGADIKAICTEAGLLALRERRM-KVTHTDFKKAKE 430 (446)
Q Consensus 396 ~s~~di~~l~~~A~~~Al~~~~~-~It~~d~~~A~~ 430 (446)
+.+.+.+++..+...+-..... .|+.+|+..++.
T Consensus 227 -~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 227 -DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp -CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 6777777777777666544333 799888876643
No 47
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=1.3e-20 Score=193.39 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=85.4
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCC-CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhcCC
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK-PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGD 268 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~-~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~-~~~g~ 268 (446)
.+|+|++++++.|..++..+..++.++..+... +++++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 358999999999999998876666666555443 5678999999999999999999999999999999999988 59995
Q ss_pred -chHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEE-eCCCCCCChh
Q 013281 269 -GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA-TNRIESLDPA 346 (446)
Q Consensus 269 -~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~a-tn~~~~ld~a 346 (446)
.+..++.+|..+.. ++++||++.+.... ......+.+..||..+|++.....+ +++ ||+++.+|++
T Consensus 95 d~e~~lr~lf~~a~~----~~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMK----LVRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHH----HHHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHh----cchhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 78999999999876 34689988874322 1122346778888889988665554 455 9999999999
Q ss_pred hcCCCceeeEEEcCCCCHH-HHHHHHH
Q 013281 347 LLRPGRIDRKIEFPLPDIK-TRRRIFQ 372 (446)
Q Consensus 347 l~r~gRf~~~i~~~~P~~~-er~~Il~ 372 (446)
|+|+||||+.|++++|+.. .+.+||.
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ---------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhc
Confidence 9999999999999999987 6777763
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.79 E-value=1.3e-18 Score=179.94 Aligned_cols=219 Identities=16% Similarity=0.232 Sum_probs=155.3
Q ss_pred CCCCccccc-Cc--HHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 013281 186 PLESYADIG-GL--DAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVV 257 (446)
Q Consensus 186 ~~~~~~di~-Gl--~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i~v~ 257 (446)
|..+|++++ |. ......+...+..+ + . +.+++||||||||||+||+++++.+ +.++++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 445888876 53 34455556555543 1 1 5679999999999999999999988 78899999
Q ss_pred chhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 258 GSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 258 ~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
+..+...+.+.........|.......++||||||++.+..+ ...+..++.+++.+.. .+.. +|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~l~~~l~~l~~---~~~~-iIitt 234 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTELFHTFNELHD---SGKQ-IVICS 234 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHHHHHHHHHHHT---TTCE-EEEEE
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHHHHHHHHHHHH---CCCe-EEEEE
Confidence 998766543222111112233333336789999999999532 2456667777765432 2334 45555
Q ss_pred CC-CCC---CChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 013281 338 NR-IES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGL 410 (446)
Q Consensus 338 n~-~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~ 410 (446)
+. +.. +++++++ ||. ..+.+++|+.+++..|++..+....+. ++..+..|+..+.| +.+++.+++..+..
T Consensus 235 ~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~ 311 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLV 311 (440)
T ss_dssp SSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 54 443 8899988 885 789999999999999999887644332 23337788888876 89999999999998
Q ss_pred HHHHhCCCCccHHHHHHHHHHHH
Q 013281 411 LALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 411 ~Al~~~~~~It~~d~~~A~~~v~ 433 (446)
.|...+. .|+.+++..++....
T Consensus 312 ~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 312 YKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHhCC-CCCHHHHHHHHHHHh
Confidence 8876654 699999999988765
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.79 E-value=2e-18 Score=170.83 Aligned_cols=218 Identities=18% Similarity=0.231 Sum_probs=151.4
Q ss_pred CCCCccccc---CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech
Q 013281 186 PLESYADIG---GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (446)
Q Consensus 186 ~~~~~~di~---Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s 259 (446)
|..+|++++ +.......++..+..+ + ..+.+++||||||||||+||+++++.+ +.+++++++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL----------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT----------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc----------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 456788876 3555666677777653 1 235679999999999999999999988 8899999999
Q ss_pred hhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 260 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 260 ~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
++...+.+.........|..... .+++|||||++.+.. ....+..+..+++.+.. .+..+||++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~~~---~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG---------KERTQIEFFHIFNTLYL---LEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT---------CHHHHHHHHHHHHHHHH---TTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC---------ChHHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 88665543222211122322222 478999999999842 12456666666665421 234555555555
Q ss_pred CC---CCChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHH--
Q 013281 340 IE---SLDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLL-- 411 (446)
Q Consensus 340 ~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~-- 411 (446)
+. .+++++++ ||. ..++|++ +.+++..|++.++....+. ++..++.|+..+ | +.+++.+++..+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~ 216 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGF 216 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCH
Confidence 54 68899988 885 6899999 9999999999998765443 233477888888 4 788999888887665
Q ss_pred -HHH-hCCCCc-cHHHHHHHHHHH
Q 013281 412 -ALR-ERRMKV-THTDFKKAKEKV 432 (446)
Q Consensus 412 -Al~-~~~~~I-t~~d~~~A~~~v 432 (446)
++. .....| +.+++.+++...
T Consensus 217 ~~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 217 EGLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCHHHHHHHHHHH
Confidence 111 223458 888988887764
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.78 E-value=3.3e-18 Score=160.40 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=147.4
Q ss_pred CCCcccccC---cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechh
Q 013281 187 LESYADIGG---LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSE 260 (446)
Q Consensus 187 ~~~~~di~G---l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~ 260 (446)
..+|++++| ...++..+..++..+ .+.+++|+||||||||++|+++++.+. .+++.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASGD-------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHTC-------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 467888876 356777777776642 356899999999999999999999764 6888999888
Q ss_pred hhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-
Q 013281 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR- 339 (446)
Q Consensus 261 l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~- 339 (446)
+...+.. . +.. ...+.+|||||+|.+.. ....+..+..+++.... .+.+.+|++||.
T Consensus 91 ~~~~~~~----~----~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~~---~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTA----L----LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVAE---QKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGG----G----GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHHH---HCSCEEEEEESSC
T ss_pred HHHHHHH----H----HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHHH---cCCCeEEEEcCCC
Confidence 7654311 1 111 13468999999999842 12235566666655421 233446666654
Q ss_pred CC---CCChhhcCCCcee--eEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 013281 340 IE---SLDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 413 (446)
Q Consensus 340 ~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al 413 (446)
+. .+++++.+ ||. ..++|+.|+.+++.+++..++...... .+..++.++..+.| +.+++.+++..|...|.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 32 45578887 885 799999999999999999988755443 23346778888766 88999999999998886
Q ss_pred HhCCCCccHHHHHHHHH
Q 013281 414 RERRMKVTHTDFKKAKE 430 (446)
Q Consensus 414 ~~~~~~It~~d~~~A~~ 430 (446)
.++ ..||.+++..++.
T Consensus 226 ~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHT-CCCCHHHHHHHHT
T ss_pred HhC-CCCcHHHHHHHhh
Confidence 655 4699999998864
No 51
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=3.8e-18 Score=171.84 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=155.3
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----------CCcEEEEech
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----------SATFLRVVGS 259 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----------~~~~i~v~~s 259 (446)
++++|.+..++.+.+++...+. -..+.+++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6789999999999988865322 1346689999999999999999999987 8899999987
Q ss_pred hhh-h----------hh-------cCCc-hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHH-HHHHH
Q 013281 260 ELI-Q----------KY-------LGDG-PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRT-MLELL 319 (446)
Q Consensus 260 ~l~-~----------~~-------~g~~-~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~-l~~lL 319 (446)
... . .. .+.. ...+..++..+.... .+|||||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC----------CCceeHHHHh
Confidence 643 1 11 1221 233455555554444 399999999995321 1233 33443
Q ss_pred HHhcCCCCCCCeEEEEEeCCC---CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHcc----CCCCCccCHHHHHHh
Q 013281 320 NQLDGFDSRGDVKVILATNRI---ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR----MTLADDVNLEEFVMT 392 (446)
Q Consensus 320 ~~ld~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~----~~~~~~~~l~~la~~ 392 (446)
... .++.||++||.. +.+++++.+ ||...+.|++|+.++..+|+..++.. ..+ .+..++.++..
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHH
Confidence 321 689999999987 678999988 88779999999999999999998763 222 23346677777
Q ss_pred CC---CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013281 393 KD---EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 393 t~---g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~ 433 (446)
+. | +.+.+.++|..|...|. +...|+.+|+..|+..+.
T Consensus 231 ~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 231 SAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 65 4 67788889999988775 557899999999998765
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=7e-19 Score=185.42 Aligned_cols=227 Identities=16% Similarity=0.218 Sum_probs=147.1
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCC-CchhhhhhCC---CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLT-HPELYEDIGI---KPPKGVILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~-~~~~~~~~g~---~~~~~vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
.+|++++.+.+|++|+|.+.+++.|.+++..... ++..|...|. .+++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 5688999999999999999999999999876311 1122333333 25678999999999999999999999999999
Q ss_pred EEechhhhhhhcCCc-------hHHHHHHHHHH-----hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHh
Q 013281 255 RVVGSELIQKYLGDG-------PKLVRELFRVA-----DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL 322 (446)
Q Consensus 255 ~v~~s~l~~~~~g~~-------~~~v~~lf~~a-----~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~l 322 (446)
.++++.+........ ...+..+|..+ ....++||||||+|.+... .......|..++...
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~--------~~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--------DRGGVGQLAQFCRKT 178 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--------STTHHHHHHHHHHHC
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh--------hHHHHHHHHHHHHhc
Confidence 999987644321000 00011223222 2245789999999999532 122345566666542
Q ss_pred cCCCCCCCeEEEEEeCCC--CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHH
Q 013281 323 DGFDSRGDVKVILATNRI--ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGA 399 (446)
Q Consensus 323 d~~~~~~~v~vI~atn~~--~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~ 399 (446)
++.||+++|.. ..+. .+.+ | ...+.|+.|+.+++.+++...+....+. .+..+..|+..+.| +.+
T Consensus 179 -------~~~iIli~~~~~~~~l~-~l~~--r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR 246 (516)
T 1sxj_A 179 -------STPLILICNERNLPKMR-PFDR--V-CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIR 246 (516)
T ss_dssp -------SSCEEEEESCTTSSTTG-GGTT--T-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHH
T ss_pred -------CCCEEEEEcCCCCccch-hhHh--c-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 23355555543 3343 3443 4 4589999999999999998776543322 23347888888765 444
Q ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013281 400 DIKAICTEAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 400 di~~l~~~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
.+.+++.. .+. ....|+.+++..++.
T Consensus 247 ~~i~~L~~---~~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 247 QVINLLST---IST--TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHTH---HHH--HSSCCCTTHHHHHHH
T ss_pred HHHHHHHH---HHh--cCCCCchHHHHHHHH
Confidence 44444433 333 335677777766655
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.77 E-value=4.6e-17 Score=162.19 Aligned_cols=221 Identities=17% Similarity=0.196 Sum_probs=162.8
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
....+.+|++++|.+.+++.+...+..... .-.++.+++|+|||||||||||+++|+.++.++...+++.+.
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 444567899999999999988887764100 013456799999999999999999999999988877765432
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc-------CCC------CCC
Q 013281 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-------GFD------SRG 329 (446)
Q Consensus 263 ~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld-------~~~------~~~ 329 (446)
. ...+..++.. .....|+||||++.+. ...+..+...+.... +.. ...
T Consensus 89 ~------~~~l~~~~~~--~~~~~v~~iDE~~~l~-----------~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 89 K------QGDMAAILTS--LERGDVLFIDEIHRLN-----------KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp S------HHHHHHHHHH--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCCCC---------------C
T ss_pred C------HHHHHHHHHH--ccCCCEEEEcchhhcC-----------HHHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 1 1223333322 1245799999999983 234455544443211 000 012
Q ss_pred CeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHH
Q 013281 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEA 408 (446)
Q Consensus 330 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A 408 (446)
.+.++++|+.+..+++.+++ ||...+.+++|+.++..+|++......... ++..+..|+..+.| +++.+.++|+.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46788899999999999998 998889999999999999999887665544 23346788888887 789999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHH
Q 013281 409 GLLALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 409 ~~~Al~~~~~~It~~d~~~A~~~v~ 433 (446)
...|..++...||.+++..|+..+.
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 9999888888899999999988754
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.77 E-value=2.8e-18 Score=168.19 Aligned_cols=206 Identities=19% Similarity=0.303 Sum_probs=144.1
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh----
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK---- 264 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~---- 264 (446)
+++|.+.+++.+...+....... .-.-.+..+++|+||||||||++|+++|+.+ +.+|+.++|+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 47899999999999887631000 0011233579999999999999999999987 457999999876432
Q ss_pred -hcCCchHH-----HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC------CCCeE
Q 013281 265 -YLGDGPKL-----VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS------RGDVK 332 (446)
Q Consensus 265 -~~g~~~~~-----v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~------~~~v~ 332 (446)
.+|..... ...+.........+||||||+|.+ ....+..|+.+|+....... ..+++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 22211100 012223333344589999999999 56788888888876421111 13678
Q ss_pred EEEEeCC--------------------------CCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC-------C
Q 013281 333 VILATNR--------------------------IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-------T 379 (446)
Q Consensus 333 vI~atn~--------------------------~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~-------~ 379 (446)
+|+|||. ...+++++++ ||+..+.|++|+.+++..|++.++... .
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998 4468889987 999999999999999999998876542 1
Q ss_pred CC---CccCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHH
Q 013281 380 LA---DDVNLEEFVMTKD--EFSGADIKAICTEAGLLALR 414 (446)
Q Consensus 380 ~~---~~~~l~~la~~t~--g~s~~di~~l~~~A~~~Al~ 414 (446)
.. .+..++.|+.... .++.++|++++..+...++.
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 11 2334667777665 56889999999988776654
No 55
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.77 E-value=5e-18 Score=166.38 Aligned_cols=209 Identities=20% Similarity=0.239 Sum_probs=146.4
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEE
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFL 254 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i 254 (446)
++.+++.+.+|++++|.+.+++.+...+.. + ..+ ++||+||||||||++|+++++.+ ..+++
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------K-NIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------T-CCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------C-CCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 466788889999999999999999988765 1 122 49999999999999999999986 34688
Q ss_pred EEechhhhhhhcCCchHHHHHHHHHHh--hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 255 RVVGSELIQKYLGDGPKLVRELFRVAD--DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 255 ~v~~s~l~~~~~g~~~~~v~~lf~~a~--~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
.++++.... .......+........ ...+.||+|||+|.+ ....+..|..++ +. ...++.
T Consensus 73 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~l---e~--~~~~~~ 134 (319)
T 2chq_A 73 EMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTM---EM--YSKSCR 134 (319)
T ss_dssp EEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-----------CHHHHHTTGGGT---SS--SSSSEE
T ss_pred EEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-----------CHHHHHHHHHHH---Hh--cCCCCe
Confidence 888876432 1122222222221111 134789999999999 333444444333 32 245789
Q ss_pred EEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 013281 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLL 411 (446)
Q Consensus 333 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~ 411 (446)
+|++||.+..+.+++.+ |+. .+.|++|+.++...++..++...++. ++..+..++..+.| +.+.+.+++..+...
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~ 210 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI 210 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 99999999999999998 886 89999999999999999988766543 33346677766655 666666666554431
Q ss_pred HHHhCCCCccHHHHHHH
Q 013281 412 ALRERRMKVTHTDFKKA 428 (446)
Q Consensus 412 Al~~~~~~It~~d~~~A 428 (446)
...|+.+++..+
T Consensus 211 -----~~~i~~~~v~~~ 222 (319)
T 2chq_A 211 -----GEVVDADTIYQI 222 (319)
T ss_dssp -----SSCBCHHHHHHH
T ss_pred -----CCCCCHHHHHHH
Confidence 235776666543
No 56
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.77 E-value=2.3e-17 Score=165.37 Aligned_cols=223 Identities=20% Similarity=0.252 Sum_probs=157.3
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEechhh
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST------SATFLRVVGSEL 261 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~------~~~~i~v~~s~l 261 (446)
...++++|.+..++.+.+++...+. ...+..++|+||||||||+|++++++.+ +..++.++|...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3447899999999999998875221 1345689999999999999999999988 889999998653
Q ss_pred hh------hh----------cCCc-hHHHHHHHHHHhhcC-CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc
Q 013281 262 IQ------KY----------LGDG-PKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD 323 (446)
Q Consensus 262 ~~------~~----------~g~~-~~~v~~lf~~a~~~~-p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 323 (446)
.. .. .+.. ......++....... |.+|+|||++.+.... .. ..+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~---~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------ND---DILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CS---THHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cC---HHHHHHhhchh
Confidence 21 10 1111 223444555444433 8899999999995321 11 23334444343
Q ss_pred CCCCCCCeEEEEEeCCC---CCCChhhcCCCcee-eEEEcCCCCHHHHHHHHHHHHccCC---CCCccCHHHHHHhCC--
Q 013281 324 GFDSRGDVKVILATNRI---ESLDPALLRPGRID-RKIEFPLPDIKTRRRIFQIHTSRMT---LADDVNLEEFVMTKD-- 394 (446)
Q Consensus 324 ~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~~~~~~---~~~~~~l~~la~~t~-- 394 (446)
.. ...++.+|++||.. ..+++.+.+ ||. +.+.|++++.++..+++..++.... ...+..+..++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 22 34578999999876 457788877 664 5899999999999999998765311 112333556666665
Q ss_pred -CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013281 395 -EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 395 -g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~ 433 (446)
| +++.+.++|..|...|..++...|+.+|+..|+..+.
T Consensus 235 ~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 235 HG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 5 6788888999999999888888999999999988765
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.77 E-value=2.5e-18 Score=179.05 Aligned_cols=210 Identities=23% Similarity=0.309 Sum_probs=144.9
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCc
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SAT 252 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~ 252 (446)
+.+.+.++++|+|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+
T Consensus 172 ~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 238 (468)
T 3pxg_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (468)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 445667899999999999999998875 234589999999999999999999986 778
Q ss_pred EEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 253 ~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
|+.++++ ..|.|+.+..++.+|..+....++||||| + ..+.+..|...| ..+.+.
T Consensus 239 ~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L-------~~g~v~ 293 (468)
T 3pxg_A 239 VMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGELQ 293 (468)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSSCE
T ss_pred EEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh-------cCCCEE
Confidence 9988887 67778888888999999988889999999 1 112233332222 256899
Q ss_pred EEEEeCCCC-----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC----CC-CccCHHHHHHhCC-----CCc
Q 013281 333 VILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LA-DDVNLEEFVMTKD-----EFS 397 (446)
Q Consensus 333 vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~----~~-~~~~l~~la~~t~-----g~s 397 (446)
+|++||..+ .+++++++ ||. .|.|+.|+.+++..||+.++.... +. .+..+..++..+. .+.
T Consensus 294 vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~l 370 (468)
T 3pxg_A 294 CIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFL 370 (468)
T ss_dssp EEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred EEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcC
Confidence 999999987 68999999 997 699999999999999998876532 21 2233455555443 344
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHH
Q 013281 398 GADIKAICTEAGLLALRER-RMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 398 ~~di~~l~~~A~~~Al~~~-~~~It~~d~~~A~~~v~ 433 (446)
+.....++.+|...+..+. ......+++...++.+.
T Consensus 371 p~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 371 PDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVR 407 (468)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 5677788888776554433 33344455555555443
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=1.1e-17 Score=184.07 Aligned_cols=224 Identities=24% Similarity=0.313 Sum_probs=165.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEE
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFL 254 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~i 254 (446)
+.+.+|++++|.+..++.+.+.+.. ..+.++||+||||||||++|+++|+.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 3456899999999999999998765 246689999999999999999999986 56788
Q ss_pred EEechhhh--hhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 255 RVVGSELI--QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 255 ~v~~s~l~--~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
.++++.+. ..+.|..+..++.+|..+....++||||||+|.+.+.... ..+..+.. .+| ..+-..+++.
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~--~~~~~~~~----~~L---~~~l~~~~~~ 317 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAA----NLI---KPLLSSGKIR 317 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS--SSCHHHHH----HHH---SSCSSSCCCE
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC--CcchHHHH----HHH---HHHHhCCCeE
Confidence 88877776 4678888889999999998878899999999999755421 11222222 222 2223457889
Q ss_pred EEEEeCCC-----CCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC----CCC-CccCHHHHHHhC-----CCCc
Q 013281 333 VILATNRI-----ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLA-DDVNLEEFVMTK-----DEFS 397 (446)
Q Consensus 333 vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~----~~~-~~~~l~~la~~t-----~g~s 397 (446)
+|++||.+ ..+|+++.+ ||. .+.|+.|+.+++.+||+.+...+ .+. .+..+..++..+ +.+.
T Consensus 318 ~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~l 394 (758)
T 1r6b_X 318 VIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_dssp EEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCT
T ss_pred EEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccC
Confidence 99999864 357899998 998 79999999999999998776531 221 222345555443 3456
Q ss_pred HHHHHHHHHHHHHHHHH----hCCCCccHHHHHHHHHHHH
Q 013281 398 GADIKAICTEAGLLALR----ERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 398 ~~di~~l~~~A~~~Al~----~~~~~It~~d~~~A~~~v~ 433 (446)
+..+..++.+|+..+.. .....|+.+|+..++....
T Consensus 395 p~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 395 PDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp THHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 77888999988776655 2356799999999987753
No 59
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=1.9e-18 Score=155.56 Aligned_cols=161 Identities=24% Similarity=0.344 Sum_probs=120.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEE
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFL 254 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~i 254 (446)
..+.+|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 3456899999999999999998765 235689999999999999999999986 67899
Q ss_pred EEechhhhh--hhcCCchHHHHHHHHHHh-hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCe
Q 013281 255 RVVGSELIQ--KYLGDGPKLVRELFRVAD-DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (446)
Q Consensus 255 ~v~~s~l~~--~~~g~~~~~v~~lf~~a~-~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 331 (446)
.+++..+.. .+.+.....+..++..+. ...+.||||||+|.+...+.. ......+..+..++. ..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~l~~~~~-------~~~~ 152 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALA-------RGEL 152 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TTSC
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHHHHHHHHHhhc-------cCCe
Confidence 999888763 334444556667776553 345789999999999644321 111223445555543 3467
Q ss_pred EEEEEeCCCC-----CCChhhcCCCceeeEEEcCCCCHHHHHHHH
Q 013281 332 KVILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIF 371 (446)
Q Consensus 332 ~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il 371 (446)
.+|++||.++ .+++++++ ||. .+.|+.|+.+++.+|+
T Consensus 153 ~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 153 HCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8999998865 78999998 998 7999999999998775
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.76 E-value=5.3e-18 Score=171.43 Aligned_cols=238 Identities=19% Similarity=0.221 Sum_probs=150.1
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhh-----------------hhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYE-----------------DIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~-----------------~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
.|+|++.+++.|..++..++....... .-...++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 479999999999988843222111100 011235668999999999999999999999999999
Q ss_pred EEechhhh-hhhcCCc-hHHHHHHHHHHh----hcCCeEEEEcCcccccccccCCCC---CCcHHHHHHHHHHHHHhcC-
Q 013281 255 RVVGSELI-QKYLGDG-PKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHS---GGEREIQRTMLELLNQLDG- 324 (446)
Q Consensus 255 ~v~~s~l~-~~~~g~~-~~~v~~lf~~a~----~~~p~IL~IDEid~l~~~r~~~~~---~~~~~~~~~l~~lL~~ld~- 324 (446)
.++++.+. ..|.|.. ...+..++..+. ...++||||||+|.+...+..... ......+..|+.+|+...-
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998876 3455543 445556655432 235789999999999765322111 1122367777777763210
Q ss_pred C---------------CCCCCeEEEEEeCC-----------------------------------------CCCCChhhc
Q 013281 325 F---------------DSRGDVKVILATNR-----------------------------------------IESLDPALL 348 (446)
Q Consensus 325 ~---------------~~~~~v~vI~atn~-----------------------------------------~~~ld~al~ 348 (446)
+ ....++++|++||. ...+.|+++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 11256788888872 113567777
Q ss_pred CCCceeeEEEcCCCCHHHHHHHHHH----HHc-------cCC--CC-CccCHHHHHHhCC--CCcHHHHHHHHHHHHHHH
Q 013281 349 RPGRIDRKIEFPLPDIKTRRRIFQI----HTS-------RMT--LA-DDVNLEEFVMTKD--EFSGADIKAICTEAGLLA 412 (446)
Q Consensus 349 r~gRf~~~i~~~~P~~~er~~Il~~----~~~-------~~~--~~-~~~~l~~la~~t~--g~s~~di~~l~~~A~~~A 412 (446)
+ ||+..+.|++++.++...|+.. ++. ... +. .+..+..|+.... ..+.+.+++++..+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 7 9988999999999999998862 111 111 11 2233566666643 347899999999998887
Q ss_pred HHhCC------CCccHHHHHHHHHH
Q 013281 413 LRERR------MKVTHTDFKKAKEK 431 (446)
Q Consensus 413 l~~~~------~~It~~d~~~A~~~ 431 (446)
+.+.. ..|+.+++..+.+.
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred HhhccCCCCCEEEEeHHHhcCCCCc
Confidence 76532 25888888765443
No 61
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2e-18 Score=170.41 Aligned_cols=214 Identities=8% Similarity=0.059 Sum_probs=149.1
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEechhhh
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFLRVVGSELI 262 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~i~v~~s~l~ 262 (446)
|.|.++++..|..++...+. -..+.+++||||||||||++++++++++ ...+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 57889999998888776332 2467889999999999999999999988 3478899987643
Q ss_pred hh----------h------cCCchHHHHHHHHHH--hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC
Q 013281 263 QK----------Y------LGDGPKLVRELFRVA--DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG 324 (446)
Q Consensus 263 ~~----------~------~g~~~~~v~~lf~~a--~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 324 (446)
+. . .+.....+..+|... ....+.||||||+|.+. .|..|..+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 31 2 233456677888764 34467899999999995 1345555654322
Q ss_pred CCCCCCeEEEEEeCCCCCC----ChhhcCCCcee-eEEEcCCCCHHHHHHHHHHHHccCCCC------------------
Q 013281 325 FDSRGDVKVILATNRIESL----DPALLRPGRID-RKIEFPLPDIKTRRRIFQIHTSRMTLA------------------ 381 (446)
Q Consensus 325 ~~~~~~v~vI~atn~~~~l----d~al~r~gRf~-~~i~~~~P~~~er~~Il~~~~~~~~~~------------------ 381 (446)
....++.||+++|..+.. ++++.+ ||. ..|.|++++.++..+|++.++....-.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~ 235 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIR 235 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 234679999999987643 444555 775 689999999999999999888653210
Q ss_pred ------------------CccCHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHh---------CCCCccHHHHHHHHHH
Q 013281 382 ------------------DDVNLEEFVMT---KDEFSGADIKAICTEAGLLALRE---------RRMKVTHTDFKKAKEK 431 (446)
Q Consensus 382 ------------------~~~~l~~la~~---t~g~s~~di~~l~~~A~~~Al~~---------~~~~It~~d~~~A~~~ 431 (446)
.+..++.+|.. ..| ..+-.-.+|+.|+..|-++ +...||.+.+.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 236 EGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp -------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHH
Confidence 12234555553 233 4455557899999888664 2245777777777666
Q ss_pred HH
Q 013281 432 VM 433 (446)
Q Consensus 432 v~ 433 (446)
++
T Consensus 315 ~~ 316 (318)
T 3te6_A 315 AI 316 (318)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 62
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=5.4e-17 Score=159.52 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=143.7
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcE
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-----ATF 253 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~-----~~~ 253 (446)
..+.+++.+.+|++++|.+.+++.+..++... ...++||+||||||||++|+++++.+. ..+
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 35677889999999999999999999988751 123599999999999999999999863 357
Q ss_pred EEEechhhhhhhcCCchHHHHHHHHHH--hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCe
Q 013281 254 LRVVGSELIQKYLGDGPKLVRELFRVA--DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (446)
Q Consensus 254 i~v~~s~l~~~~~g~~~~~v~~lf~~a--~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 331 (446)
+.+++++.... ......+....... ....+.+|+|||+|.+ ....+..|..+++.. ..++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~ 141 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEMF-----SSNV 141 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTE
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHhc-----CCCC
Confidence 88887654321 11111222211110 1134789999999999 445677777777653 3578
Q ss_pred EEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHH
Q 013281 332 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAG 409 (446)
Q Consensus 332 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~ 409 (446)
.+|++||.+..+.+++.+ |+. .+.|++|+.++...++..++...++. ++..+..++..+.| +.+.+.+++..+.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 899999998889999988 886 89999999999999999888765543 33346777877765 6777777776554
No 63
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=5e-17 Score=159.48 Aligned_cols=207 Identities=17% Similarity=0.167 Sum_probs=151.8
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEE
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFL 254 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i 254 (446)
.+.+++.+.+|++++|.+..++.+..++... ..+. ++|+||||||||++|+++++.+ ...++
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 76 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDG------------NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVL 76 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC------------CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHcC------------CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEE
Confidence 3566778889999999999999999998751 2233 9999999999999999999986 34677
Q ss_pred EEechhhhhhhcCCchHHHHHHHHHHh-------hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC
Q 013281 255 RVVGSELIQKYLGDGPKLVRELFRVAD-------DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (446)
Q Consensus 255 ~v~~s~l~~~~~g~~~~~v~~lf~~a~-------~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 327 (446)
.+++++.. ....++.++.... ...+.||+|||+|.+ ....+..|..+++..
T Consensus 77 ~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~----- 134 (323)
T 1sxj_B 77 ELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMELY----- 134 (323)
T ss_dssp EECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHHT-----
T ss_pred EecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhcc-----
Confidence 88776521 2334455554433 223789999999998 344566677777652
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHH
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICT 406 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~ 406 (446)
..++.+|++||.+..+.+++.+ |+. .+.|++|+.++...++..++...++. ++..+..++..+.| +.+.+.+++.
T Consensus 135 ~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~ 210 (323)
T 1sxj_B 135 SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQ 210 (323)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3578899999998899999988 875 89999999999999999887654433 23446778888766 6666666665
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHH
Q 013281 407 EAGLLALRERRMKVTHTDFKKAKE 430 (446)
Q Consensus 407 ~A~~~Al~~~~~~It~~d~~~A~~ 430 (446)
.+... . ..|+.+++..++.
T Consensus 211 ~~~~~---~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 211 STVAG---H--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHH---H--SSBCHHHHHHHHT
T ss_pred HHHhc---C--CCcCHHHHHHHHC
Confidence 55422 1 3578887766553
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.75 E-value=4.5e-17 Score=163.99 Aligned_cols=221 Identities=16% Similarity=0.147 Sum_probs=157.8
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCc--eEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEechhhhh
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPK--GVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELIQ 263 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~--~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~s~l~~ 263 (446)
.++++|.+..++.+.+++...+.. ..+. +++|+||||||||++++++++.+ +..++.++|+....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 377999999999999988753211 2234 89999999999999999999988 56889999765321
Q ss_pred ------h---hc-------CCch-HHHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC
Q 013281 264 ------K---YL-------GDGP-KLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF 325 (446)
Q Consensus 264 ------~---~~-------g~~~-~~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 325 (446)
. .+ +... .....+...... ..|.||||||+|.+ +...+..|..++.....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~- 154 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADK- 154 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCC-
Confidence 1 01 1112 222222222222 34789999999998 34455555555533211
Q ss_pred CCCCCeEEEEEeCCC---CCCChhhcCCCceee-EEEcCCCCHHHHHHHHHHHHcc---CCCCCccCHHHHHHhCC----
Q 013281 326 DSRGDVKVILATNRI---ESLDPALLRPGRIDR-KIEFPLPDIKTRRRIFQIHTSR---MTLADDVNLEEFVMTKD---- 394 (446)
Q Consensus 326 ~~~~~v~vI~atn~~---~~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~~~~---~~~~~~~~l~~la~~t~---- 394 (446)
....++.||++||.+ +.+++.+.+ ||.. .+.|++++.++..+++...+.. ...-.+..+..++..+.
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 232 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSST
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccc
Confidence 001478999999987 568888877 7764 8999999999999999988754 11223445677888873
Q ss_pred ----CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013281 395 ----EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 395 ----g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~ 433 (446)
+.+++.+.++|..|...|..++...|+.+++..|+..+.
T Consensus 233 ~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 233 LDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 237888999999999999888888999999999987754
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=2e-17 Score=181.97 Aligned_cols=199 Identities=23% Similarity=0.309 Sum_probs=145.3
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCC----CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK----PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ 263 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~----~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~ 263 (446)
.+++|.+.+++.+.+++..... +.. +..++||+||||||||++|+++|+.+ +.+|++++|+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 4589999999999998876321 222 22369999999999999999999987 67999999999988
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC------CCCCeEEEEEe
Q 013281 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRGDVKVILAT 337 (446)
Q Consensus 264 ~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~~~~v~vI~at 337 (446)
.+... ...++...+...++||||||||.+ +.+++..|+++|+.-.-.. ...+++||+||
T Consensus 563 ~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 76554 122333444556789999999998 6788999999998632111 23478999999
Q ss_pred CCCCC------------CChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC-------CCC---CccCHHHHHHh--C
Q 013281 338 NRIES------------LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-------TLA---DDVNLEEFVMT--K 393 (446)
Q Consensus 338 n~~~~------------ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~-------~~~---~~~~l~~la~~--t 393 (446)
|.+.. +.|++++ ||+..|.|++|+.+++..|+..++..+ ... .+..++.|+.. .
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 705 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVD 705 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCC
Confidence 97543 7888988 999899999999999999998876542 111 22235566553 3
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 013281 394 DEFSGADIKAICTEAGLLALR 414 (446)
Q Consensus 394 ~g~s~~di~~l~~~A~~~Al~ 414 (446)
..++.++|+++++.+...++.
T Consensus 706 ~~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 706 LEYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp TTTTTTTHHHHHHHHTHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH
Confidence 456778899988877665554
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.74 E-value=4.8e-17 Score=163.14 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=150.5
Q ss_pred hcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------
Q 013281 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (446)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~-------- 252 (446)
..+++.+.+|++++|.+.+++.+...+... ..+..++|+||||||||++|+++++.+.+.
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 345677889999999999999999988652 335579999999999999999999987542
Q ss_pred ----------------EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHH
Q 013281 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (446)
Q Consensus 253 ----------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~ 312 (446)
++.+++.. ......++.++..+.. ..+.||+|||+|.+ +...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~ 136 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSF 136 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHHHH
T ss_pred cccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cHHHH
Confidence 23332221 0112235556665542 24689999999998 34455
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHH
Q 013281 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVM 391 (446)
Q Consensus 313 ~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~ 391 (446)
..|+.+++. ...++++|++|+.+..+.+.+++ |+ ..+.|++|+.++...++..++...++. .+..+..++.
T Consensus 137 ~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~ 208 (373)
T 1jr3_A 137 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 (373)
T ss_dssp HHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666653 24578999999988889999988 87 589999999999999999887654443 2334677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A 428 (446)
.+.| +++++.+++..+...+ ...|+.+++..+
T Consensus 209 ~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~ 240 (373)
T 1jr3_A 209 AAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAM 240 (373)
T ss_dssp HSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHH
Confidence 8876 7888888888775432 346787777654
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.73 E-value=2.3e-17 Score=181.50 Aligned_cols=192 Identities=25% Similarity=0.312 Sum_probs=138.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCc
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SAT 252 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~ 252 (446)
+.+...++++|+|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+
T Consensus 172 ~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~ 238 (758)
T 3pxi_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (758)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe
Confidence 445667899999999999999998875 235679999999999999999999997 778
Q ss_pred EEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 253 ~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
++.+++ ..+|.|+.+..++.+|..+....++||||| + ....+..|...+ ..+.+.
T Consensus 239 ~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l-------~~~~v~ 293 (758)
T 3pxi_A 239 VMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGELQ 293 (758)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSSCE
T ss_pred EEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHH-------hcCCEE
Confidence 888877 456788888899999999998889999999 1 112222222222 256899
Q ss_pred EEEEeCCCC-----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCC-----ccCHHHHHHh-----CCCCc
Q 013281 333 VILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-----DVNLEEFVMT-----KDEFS 397 (446)
Q Consensus 333 vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~-----~~~l~~la~~-----t~g~s 397 (446)
+|++||..+ .+++++++ ||. .|.|+.|+.+++..||+.+...+.... +..+..++.. ++++.
T Consensus 294 ~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~ 370 (758)
T 3pxi_A 294 CIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFL 370 (758)
T ss_dssp EEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred EEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcC
Confidence 999999988 79999999 995 799999999999999998776533222 2224444433 34567
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013281 398 GADIKAICTEAGLLALRE 415 (446)
Q Consensus 398 ~~di~~l~~~A~~~Al~~ 415 (446)
+.....++.+|+..+..+
T Consensus 371 p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 371 PDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhh
Confidence 788888888887666443
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.72 E-value=4.1e-17 Score=156.78 Aligned_cols=208 Identities=18% Similarity=0.203 Sum_probs=129.5
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhh
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK 264 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~ 264 (446)
.+|++++|.+..++.+.+.+.... ..+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 478899999999999988877531 2356899999999999999999999875 68999999876432
Q ss_pred h-----cCCchHH-------HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcC------CC
Q 013281 265 Y-----LGDGPKL-------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG------FD 326 (446)
Q Consensus 265 ~-----~g~~~~~-------v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~------~~ 326 (446)
. .|..... ....|..+ ..++|||||+|.+ ....+..|+.+++...- ..
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCccc
Confidence 1 1211100 01123333 3579999999999 45678888888875310 01
Q ss_pred CCCCeEEEEEeCCC-------CCCChhhcCCCcee-eEEEcCCCCH--HHHHHHHHHHHc----cCCCC-----CccCHH
Q 013281 327 SRGDVKVILATNRI-------ESLDPALLRPGRID-RKIEFPLPDI--KTRRRIFQIHTS----RMTLA-----DDVNLE 387 (446)
Q Consensus 327 ~~~~v~vI~atn~~-------~~ld~al~r~gRf~-~~i~~~~P~~--~er~~Il~~~~~----~~~~~-----~~~~l~ 387 (446)
...++.+|+|||.. ..+.++|++ ||. ..+.+|+.+. ++...+++.++. ..... .+..+.
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 12468999999984 247788887 885 3455555433 344444444432 23221 222345
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 013281 388 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425 (446)
Q Consensus 388 ~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~ 425 (446)
.|.......+.+++++++..+...+ ....|+.+|+
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 5555554457789999998887655 3345666655
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.71 E-value=6.3e-17 Score=177.99 Aligned_cols=202 Identities=17% Similarity=0.265 Sum_probs=144.8
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCC----CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh---
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIK----PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK--- 264 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~----~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~--- 264 (446)
+++|.+.+++.+..++... ..|+. +..++||+||||||||++|+++|+.++.+|++++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4789999999988887652 22332 33479999999999999999999999999999999988653
Q ss_pred --hcCCchHHH-----HHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC------CCCe
Q 013281 265 --YLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS------RGDV 331 (446)
Q Consensus 265 --~~g~~~~~v-----~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~------~~~v 331 (446)
.+|..+..+ ..+....+...++||||||||.+ ..+++..|+++++.-.-.+. -.++
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 222221111 12344444556799999999998 56788888888875311110 1468
Q ss_pred EEEEEeCCCC-------------------------CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC-------C
Q 013281 332 KVILATNRIE-------------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-------T 379 (446)
Q Consensus 332 ~vI~atn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~-------~ 379 (446)
+||+|||... .++|++++ ||+..|.|++|+.+++..|+..++... .
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~ 677 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKG 677 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8999999743 57888988 999899999999999999999887632 1
Q ss_pred --CC-CccCHHHHHHhC--CCCcHHHHHHHHHHHHHHHHH
Q 013281 380 --LA-DDVNLEEFVMTK--DEFSGADIKAICTEAGLLALR 414 (446)
Q Consensus 380 --~~-~~~~l~~la~~t--~g~s~~di~~l~~~A~~~Al~ 414 (446)
+. .+..++.|+... ..+..++++++++.+...++.
T Consensus 678 ~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~ 717 (758)
T 1r6b_X 678 VSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_dssp EEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHH
Confidence 11 223356666543 345578888888877765443
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.71 E-value=3.4e-17 Score=147.14 Aligned_cols=153 Identities=26% Similarity=0.379 Sum_probs=114.0
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEE
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFLR 255 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~i~ 255 (446)
.+.+|++++|.+..++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 356789999999999999988765 235689999999999999999999987 778888
Q ss_pred Eechhhhhh--hcCCchHHHHHHHHHHhhc-CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeE
Q 013281 256 VVGSELIQK--YLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (446)
Q Consensus 256 v~~s~l~~~--~~g~~~~~v~~lf~~a~~~-~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 332 (446)
+++..+... +.+.....+..++..+... .|.+|||||+|.+...+.. .....+....+..++. ..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~~~~~l~~~~~-------~~~~~ 154 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALDAGNILKPMLA-------RGELR 154 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCCTHHHHHHHHH-------TTCSC
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchHHHHHHHHHHh-------cCCee
Confidence 888877532 3344445566777766554 6789999999999644321 1112234455555553 35688
Q ss_pred EEEEeCCCC-----CCChhhcCCCceeeEEEcCCCC
Q 013281 333 VILATNRIE-----SLDPALLRPGRIDRKIEFPLPD 363 (446)
Q Consensus 333 vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~ 363 (446)
+|++||.+. .+++++++ ||. .++++.|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 999998764 68999999 998 59999886
No 71
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=3.8e-16 Score=155.83 Aligned_cols=196 Identities=15% Similarity=0.211 Sum_probs=141.0
Q ss_pred hhcccCCCCCcccccCcHHHHHHHHHHh-hcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------
Q 013281 180 MKVEKAPLESYADIGGLDAQIQEIKEAV-ELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA------- 251 (446)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~i~~l~e~i-~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~------- 251 (446)
+|++++.+.+|++++|.+.+++.++.++ .. + ..+. ++|+||+|||||++++++++.+..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 5788999999999999999999998887 43 1 2344 999999999999999999996421
Q ss_pred ----------------------cEEEEechhhhhhhcCCchHHHHHHHHHHh--------------hcCCeEEEEcCccc
Q 013281 252 ----------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAD--------------DLSPSIVFIDEIDA 295 (446)
Q Consensus 252 ----------------------~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~--------------~~~p~IL~IDEid~ 295 (446)
.++.++++... ......++..+..+. ...|.||+|||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS 145 (354)
T ss_dssp ----------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS
T ss_pred ecceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc
Confidence 12223222110 001112444444332 22567999999999
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHH
Q 013281 296 VGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (446)
Q Consensus 296 l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~ 375 (446)
+ +...+..+..++++. ..++.+|++||.++.+.+++++ |+ ..+.|++|+.++...+++..+
T Consensus 146 L-----------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 146 L-----------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp S-----------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred c-----------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 7 556677788888764 2468899999999999999988 88 689999999999999999887
Q ss_pred ccCCCC-C-ccCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 013281 376 SRMTLA-D-DVNLEEFVMTKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 376 ~~~~~~-~-~~~l~~la~~t~g~s~~di~~l~~~A~~~A 412 (446)
...++. + +..+..++..+.| +.+++.+++..+...+
T Consensus 207 ~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 207 TNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred HHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 654443 2 4457788888776 7777777777665543
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.71 E-value=2e-17 Score=172.97 Aligned_cols=205 Identities=20% Similarity=0.138 Sum_probs=136.3
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEech-----hhhhh
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGS-----ELIQK 264 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s-----~l~~~ 264 (446)
.|+|.+.+++.+..++.. ..+|||+||||||||++|+++|+.++. +|..+.+. ++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 478999999888777654 458999999999999999999998843 56665553 23222
Q ss_pred hcCCchHHHHHHHHHHhhc---CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc----CCCC-CCCeEEEEE
Q 013281 265 YLGDGPKLVRELFRVADDL---SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GFDS-RGDVKVILA 336 (446)
Q Consensus 265 ~~g~~~~~v~~lf~~a~~~---~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~~~~-~~~v~vI~a 336 (446)
+.+..... ...|..+... .++|||||||+.+ ....+..|++++++-. +... ....++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 21111110 1223222211 3679999999887 5678888888887421 1111 112246888
Q ss_pred eCCCCC---CChhhcCCCceeeEEEcCCCCH-HHHHHHHHHHHccC-------------------------CCCCccCHH
Q 013281 337 TNRIES---LDPALLRPGRIDRKIEFPLPDI-KTRRRIFQIHTSRM-------------------------TLADDVNLE 387 (446)
Q Consensus 337 tn~~~~---ld~al~r~gRf~~~i~~~~P~~-~er~~Il~~~~~~~-------------------------~~~~~~~l~ 387 (446)
||.... +.+++++ ||...+.++.|+. +++..|+..+.... .+. +.-++
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~v~e 232 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DHVFE 232 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HHHHH
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hHHHH
Confidence 886322 4458988 9999999999987 67888887654311 111 11123
Q ss_pred HHHHh---------CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Q 013281 388 EFVMT---------KDEFSGADIKAICTEAGLLALRERRMKVTHTDFK 426 (446)
Q Consensus 388 ~la~~---------t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~ 426 (446)
.++.. ..|.|++.+.++++.|...|..+++..|+.+|+.
T Consensus 233 ~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 233 LIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 33322 2478999999999999999999999999999887
No 73
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.70 E-value=3.1e-17 Score=161.47 Aligned_cols=205 Identities=18% Similarity=0.226 Sum_probs=132.8
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh--
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY-- 265 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~-- 265 (446)
++|+|.+..++.+.+.+... ...+.+|||+||||||||++|+++++.. +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 35789999999999988763 2346689999999999999999999976 5689999998764321
Q ss_pred ---cCCc----hH---HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCC------CCCC
Q 013281 266 ---LGDG----PK---LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DSRG 329 (446)
Q Consensus 266 ---~g~~----~~---~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------~~~~ 329 (446)
.|.. .. .....|..+. .++||||||+.+ ....|..|+.+|+...-. ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 1110 00 1123455554 379999999999 456788888888753210 1124
Q ss_pred CeEEEEEeCCC-------CCCChhhcCCCcee-eEEEcCCCC--HHHHHHHHHHHHcc----CCC----CCccCHHHHHH
Q 013281 330 DVKVILATNRI-------ESLDPALLRPGRID-RKIEFPLPD--IKTRRRIFQIHTSR----MTL----ADDVNLEEFVM 391 (446)
Q Consensus 330 ~v~vI~atn~~-------~~ld~al~r~gRf~-~~i~~~~P~--~~er~~Il~~~~~~----~~~----~~~~~l~~la~ 391 (446)
++.||+|||.. ..++++|.. ||. ..|.+|+.. .++...++..++.. ... -.+..+..|..
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 68999999985 235666766 774 234454443 23334455554432 221 12233566667
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHH
Q 013281 392 TKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425 (446)
Q Consensus 392 ~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~ 425 (446)
+....+.+++.+++..|...+ ....|+.+|+
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l 245 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISEREL 245 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGS
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhh
Confidence 664557889999999887665 2344555554
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=8.6e-17 Score=179.10 Aligned_cols=206 Identities=20% Similarity=0.266 Sum_probs=139.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcE
Q 013281 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (446)
Q Consensus 184 ~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----------~~~~ 253 (446)
.+.+.+|++++|.+..+..+.+.+.. ..+.+++|+||||||||++|+++|+.+ +.++
T Consensus 163 ~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 229 (854)
T 1qvr_A 163 LAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRI 229 (854)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEE
T ss_pred HHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeE
Confidence 44567899999999999999998765 235579999999999999999999987 7899
Q ss_pred EEEechhhh--hhhcCCchHHHHHHHHHHhhc-CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCC
Q 013281 254 LRVVGSELI--QKYLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (446)
Q Consensus 254 i~v~~s~l~--~~~~g~~~~~v~~lf~~a~~~-~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 330 (446)
+.++++.+. ..+.|+....+..+|..+... .|+||||||+|.+.+.... .+..+....+..++. .++
T Consensus 230 ~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~-------~~~ 299 (854)
T 1qvr_A 230 VSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALA-------RGE 299 (854)
T ss_dssp EEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH-------TTC
T ss_pred EEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHh-------CCC
Confidence 999999887 467888888899999988765 6899999999999654321 122334455555553 357
Q ss_pred eEEEEEeCCCC----CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC----CCC-CccCHHHHHHh-----CCCC
Q 013281 331 VKVILATNRIE----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLA-DDVNLEEFVMT-----KDEF 396 (446)
Q Consensus 331 v~vI~atn~~~----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~----~~~-~~~~l~~la~~-----t~g~ 396 (446)
+.+|++||..+ .+++++.+ ||.. +.|+.|+.+++..|++.++... .+. .+..+..++.. ++.+
T Consensus 300 i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~ 376 (854)
T 1qvr_A 300 LRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERR 376 (854)
T ss_dssp CCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSC
T ss_pred eEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhccccc
Confidence 88999998764 47899999 9984 9999999999999998766532 211 22234444443 3456
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 013281 397 SGADIKAICTEAGLLALRE 415 (446)
Q Consensus 397 s~~di~~l~~~A~~~Al~~ 415 (446)
.+.....++.+|+..+..+
T Consensus 377 lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 377 LPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 7888888888887666543
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=7.6e-16 Score=153.47 Aligned_cols=211 Identities=18% Similarity=0.244 Sum_probs=145.3
Q ss_pred hhhcccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cE
Q 013281 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-----TF 253 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~-----~~ 253 (446)
..+.+++.+.+|++++|.+.+++.|...+.. | ..+ +++|+||||||||++|+++|+.+.. .+
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 3477788999999999999999999998875 2 223 3999999999999999999998632 46
Q ss_pred EEEechhhhhhhcCCchHHHHHHHHHHh------hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC
Q 013281 254 LRVVGSELIQKYLGDGPKLVRELFRVAD------DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (446)
Q Consensus 254 i~v~~s~l~~~~~g~~~~~v~~lf~~a~------~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 327 (446)
+.++++... +...++..+.... ...+.|++|||+|.+ ....+..|..+++..
T Consensus 80 ~~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~----- 137 (340)
T 1sxj_C 80 LELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERY----- 137 (340)
T ss_dssp EEECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT-----
T ss_pred EEEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcC-----
Confidence 666665421 1233333333222 123689999999998 345677777777653
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHH
Q 013281 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICT 406 (446)
Q Consensus 328 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~ 406 (446)
...+.+|++||.+..+.+++++ |+. .+.|+.++.++...++...+....+. .+..+..++..+.| +.+.+.+++.
T Consensus 138 ~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~ 213 (340)
T 1sxj_C 138 TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQ 213 (340)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTT
T ss_pred CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3567889999999999999998 886 78999999999999998887543332 23345667766655 4455555544
Q ss_pred HHHHHHHHhCCCCccHHHHHHH
Q 013281 407 EAGLLALRERRMKVTHTDFKKA 428 (446)
Q Consensus 407 ~A~~~Al~~~~~~It~~d~~~A 428 (446)
.+...+...+...|+.+++..+
T Consensus 214 ~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 214 SCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp TTTTTTCSSSCCCBCHHHHHHH
T ss_pred HHHHhcCCcccccccHHHHHHH
Confidence 4332221111235777766543
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.66 E-value=2.4e-16 Score=175.56 Aligned_cols=205 Identities=21% Similarity=0.341 Sum_probs=145.0
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCC----CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGI----KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI 262 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~----~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~ 262 (446)
+.+|+|.+.+++.+...+... ..|+ .+..++||+||||||||++|+++|+.+ +.+|+.++|+++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 457899999999999988762 1122 223479999999999999999999998 7799999998775
Q ss_pred hhh-----cCCchHH-----HHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC-----
Q 013281 263 QKY-----LGDGPKL-----VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS----- 327 (446)
Q Consensus 263 ~~~-----~g~~~~~-----v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~----- 327 (446)
... +|..+.. ...+........++|||||||+.+ +.+++..|+++|+.-.-.+.
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCE
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEe
Confidence 431 2111111 122334444455689999999998 66788888888864321111
Q ss_pred -CCCeEEEEEeCC--------------------------CCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccC--
Q 013281 328 -RGDVKVILATNR--------------------------IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-- 378 (446)
Q Consensus 328 -~~~v~vI~atn~--------------------------~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~-- 378 (446)
-.+++||+|||. ...+.|+|+. ||+..+.|.+|+.++...|+..++...
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 136889999997 2346788887 999899999999999999998877532
Q ss_pred -----C--CC-CccCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHh
Q 013281 379 -----T--LA-DDVNLEEFVMTKD--EFSGADIKAICTEAGLLALRE 415 (446)
Q Consensus 379 -----~--~~-~~~~l~~la~~t~--g~s~~di~~l~~~A~~~Al~~ 415 (446)
. +. .+..++.|+.... .++.++|+++++.+...++.+
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 1 11 2334567777655 568899999999887776543
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=9.4e-17 Score=171.67 Aligned_cols=225 Identities=20% Similarity=0.183 Sum_probs=146.1
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----echhhhhhh--
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV----VGSELIQKY-- 265 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v----~~s~l~~~~-- 265 (446)
.|+|.+.+++.+.-++... .+.......+....+|||+||||||||+||+++|+.++..++.. ++..+....
T Consensus 296 ~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 5899998877664433321 00000001223344899999999999999999999987665442 122222111
Q ss_pred ---cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc------CC--CCCCCeEEE
Q 013281 266 ---LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GF--DSRGDVKVI 334 (446)
Q Consensus 266 ---~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~--~~~~~v~vI 334 (446)
.|... .....+..| ..+||||||||.+ ....+..|+++|++-. +. ....++.||
T Consensus 374 ~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLA---DGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCS-EEECHHHHH---SSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccc-ccCCeeEec---CCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 11110 001123333 2389999999998 4567788888887422 11 113468899
Q ss_pred EEeCCCC-------------CCChhhcCCCceee-EEEcCCCCHHHHHHHHHHHHccCC---------------------
Q 013281 335 LATNRIE-------------SLDPALLRPGRIDR-KIEFPLPDIKTRRRIFQIHTSRMT--------------------- 379 (446)
Q Consensus 335 ~atn~~~-------------~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~~~~~~--------------------- 379 (446)
+|||... .+++++++ ||+. .+..+.|+.+ ...|++..+....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999876 89999999 9974 5556667766 7777776654321
Q ss_pred -----CCCccCHHHHHHh--------------CCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 013281 380 -----LADDVNLEEFVMT--------------KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 380 -----~~~~~~l~~la~~--------------t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~ 436 (446)
.-.+...+.|+.. ..+.|.+.+.++++.|...|..+.+..|+.+|+..|+.-+....
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~sl 591 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFL 591 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHH
Confidence 1111223344433 34678999999999999999999999999999999998766543
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.62 E-value=2.5e-16 Score=137.60 Aligned_cols=112 Identities=24% Similarity=0.344 Sum_probs=88.2
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchH
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPK 271 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~ 271 (446)
+++|.+.+++++.+.+... ...+.+|||+||||||||++|+++++... +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 5789999999999988753 13356799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 272 LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 272 ~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
...+|..+. .++|||||+|.+ ..+.|..++.+++... ..++.+|+|||..
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 455666654 489999999999 5667888888887642 4578899999864
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.61 E-value=4.1e-16 Score=136.45 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=86.3
Q ss_pred cccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCC
Q 013281 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGD 268 (446)
Q Consensus 192 di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~ 268 (446)
+++|.+..++.+.+.+... ...+.+|||+||||||||++|+++++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5789999999999988752 2345679999999999999999999986 67899 999886544
Q ss_pred chHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 269 GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 269 ~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
......|..+.. ++|||||||.+ ....|..|+.++.. ...++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcC
Confidence 223455666643 89999999999 56678888888732 24568899999974
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.59 E-value=8.4e-15 Score=157.11 Aligned_cols=221 Identities=23% Similarity=0.322 Sum_probs=145.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEech
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---FLRVVGS 259 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~---~i~v~~s 259 (446)
.+.++.+|++++|.+.+++.+...+.. ..+++|+||||||||+||+++|..+... .+.+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 456778899999999999999888875 3579999999999999999999987532 1222111
Q ss_pred hhh--------------h------------------------------------------hhcCCchHHHHHHHHH----
Q 013281 260 ELI--------------Q------------------------------------------KYLGDGPKLVRELFRV---- 279 (446)
Q Consensus 260 ~l~--------------~------------------------------------------~~~g~~~~~v~~lf~~---- 279 (446)
... . .++.........+|..
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 000 0 0000000001111110
Q ss_pred -------------------HhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc----CC-----------
Q 013281 280 -------------------ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GF----------- 325 (446)
Q Consensus 280 -------------------a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld----~~----------- 325 (446)
.....+++|||||++.+ +...+..|+.+|+.-. +.
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~ 246 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRT 246 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBC
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCC
Confidence 11124579999999998 5678899999987432 10
Q ss_pred -CCCCCeEEEEEeCCC--CCCChhhcCCCcee---eEEEcCCC---CHHHHHHHHHHHHccC------CCCCccCHHHHH
Q 013281 326 -DSRGDVKVILATNRI--ESLDPALLRPGRID---RKIEFPLP---DIKTRRRIFQIHTSRM------TLADDVNLEEFV 390 (446)
Q Consensus 326 -~~~~~v~vI~atn~~--~~ld~al~r~gRf~---~~i~~~~P---~~~er~~Il~~~~~~~------~~~~~~~l~~la 390 (446)
....+++||+|||+. ..++++|++ ||. ..+.|+.. +.+....+++...... ..-.+..+..|+
T Consensus 247 ~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li 324 (604)
T 3k1j_A 247 EPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIV 324 (604)
T ss_dssp SCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHH
T ss_pred CccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHH
Confidence 112478999999986 579999999 986 46666532 3445555555443221 111223344554
Q ss_pred HhC---CC------CcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013281 391 MTK---DE------FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEK 431 (446)
Q Consensus 391 ~~t---~g------~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~ 431 (446)
... .| .+.+++.++++.|...|..+.+..|+.+|+..|+..
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 432 44 268999999999999998889999999999999864
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=2.5e-13 Score=137.74 Aligned_cols=228 Identities=15% Similarity=0.130 Sum_probs=149.6
Q ss_pred cccccCcHHHHHHHHHHh-hcCCCCchhhhhhCC-CCCceEEE--EcCCCCcHHHHHHHHHHHh---------CCcEEEE
Q 013281 190 YADIGGLDAQIQEIKEAV-ELPLTHPELYEDIGI-KPPKGVIL--YGEPGTGKTLLAKAVANST---------SATFLRV 256 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i-~~pl~~~~~~~~~g~-~~~~~vLL--~GppGtGKT~Laraia~~~---------~~~~i~v 256 (446)
..+++|.+..++.|.+.+ ..... +. ..+..++| +||||||||+|++++++.+ +..++++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 367899999999999988 53211 10 23567999 9999999999999999876 4567888
Q ss_pred echhh------hhh---hcC-------Cch-HHHHHHHHHHh-hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHH
Q 013281 257 VGSEL------IQK---YLG-------DGP-KLVRELFRVAD-DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLEL 318 (446)
Q Consensus 257 ~~s~l------~~~---~~g-------~~~-~~v~~lf~~a~-~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~l 318 (446)
+|... ... .++ ... .....+..... ...|.+|+|||+|.+...+ ....+....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~-----~~~~~~l~~l~~~ 167 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP-----RIAAEDLYTLLRV 167 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT-----TSCHHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc-----CcchHHHHHHHHH
Confidence 87431 111 111 111 22223332222 2357899999999995321 0123444445555
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCC---CCC---hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCC---CCCccCHHHH
Q 013281 319 LNQLDGFDSRGDVKVILATNRIE---SLD---PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT---LADDVNLEEF 389 (446)
Q Consensus 319 L~~ld~~~~~~~v~vI~atn~~~---~ld---~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~---~~~~~~l~~l 389 (446)
+..+..-....++.+|++|+.++ .++ +.+.+ ++...+.+++++.++..+++..++.... ...+..+..+
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 54432000025788998887654 233 55656 5555599999999999999987764211 1123346677
Q ss_pred HHhCC------CCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013281 390 VMTKD------EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 390 a~~t~------g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~ 433 (446)
+..+. | +++.+..+|..|...|..+....|+.+++..++....
T Consensus 246 ~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 246 SDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 77777 6 7888999999999888888888899999998886653
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.50 E-value=6.7e-13 Score=131.99 Aligned_cols=174 Identities=14% Similarity=0.152 Sum_probs=121.0
Q ss_pred CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------------
Q 013281 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---------------------- 252 (446)
Q Consensus 195 Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~---------------------- 252 (446)
-+++.++.+...+..- +.+..+||+||||||||++|+++|+.+.+.
T Consensus 6 w~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4577788888887651 346679999999999999999999987542
Q ss_pred --EEEEechhhhhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC
Q 013281 253 --FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD 326 (446)
Q Consensus 253 --~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 326 (446)
++.+...+ .........++.+++.+.. ....|++|||+|.+ +.+.+..|+..| +.
T Consensus 74 ~d~~~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~l---Ee-- 134 (334)
T 1a5t_A 74 PDYYTLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTL---EE-- 134 (334)
T ss_dssp TTEEEECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHH---TS--
T ss_pred CCEEEEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHh---cC--
Confidence 23332210 0001223456777776653 23579999999999 344455555444 42
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHH
Q 013281 327 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICT 406 (446)
Q Consensus 327 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~ 406 (446)
...++++|++||.++.+.+++++ |+. .+.|+.|+.++...++.... .+ ++..+..++..+.| +.+.+.+++.
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred CCCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 34678999999999999999998 885 79999999999999998775 22 33445677777766 5665555544
Q ss_pred H
Q 013281 407 E 407 (446)
Q Consensus 407 ~ 407 (446)
.
T Consensus 207 ~ 207 (334)
T 1a5t_A 207 G 207 (334)
T ss_dssp S
T ss_pred c
Confidence 3
No 83
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.49 E-value=9.9e-14 Score=108.42 Aligned_cols=77 Identities=44% Similarity=0.705 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhh
Q 013281 360 PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 436 (446)
Q Consensus 360 ~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~ 436 (446)
|+|+.++|.+||+.|+.++.+..++++..||..|+||||+||.++|++|++.|++++...|+++||..|+++++.++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Confidence 68999999999999999999888999999999999999999999999999999999999999999999999998654
No 84
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.48 E-value=1.8e-13 Score=138.89 Aligned_cols=208 Identities=18% Similarity=0.264 Sum_probs=137.6
Q ss_pred cccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhhh--
Q 013281 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK-- 264 (446)
Q Consensus 190 ~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~~-- 264 (446)
+..++|.+..++++.+.+... ......|+|+|++|||||++|++++.... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 457888898898888877762 23345699999999999999999998765 58999999876432
Q ss_pred -----------hcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhc-----CCC-C
Q 013281 265 -----------YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-----GFD-S 327 (446)
Q Consensus 265 -----------~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld-----~~~-~ 327 (446)
|.|.... ....|+.|.. ++||||||+.+ +.+.|..|+++|+.-. +.. .
T Consensus 205 ~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 1121111 2245666554 89999999999 7789999999998632 111 1
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCceeeEEEcCCCCHHHHHH----HHHHHHc----cCCCC----CccCHHH
Q 013281 328 RGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTS----RMTLA----DDVNLEE 388 (446)
Q Consensus 328 ~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~~~----~~~~~----~~~~l~~ 388 (446)
..++++|+|||.. ..+.+.|.. |+. .+.+..|...+|.+ ++..++. ..... .+..+..
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2478999999973 223444443 442 34455566555533 4444433 23322 2223455
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013281 389 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 429 (446)
Q Consensus 389 la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~ 429 (446)
|..+..-.+.+++++++++|...+ ....|+.+|+...+
T Consensus 347 l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 347 LLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 666655557789999999888765 44679999986543
No 85
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=108.33 Aligned_cols=77 Identities=43% Similarity=0.673 Sum_probs=73.0
Q ss_pred cCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhh
Q 013281 359 FPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 359 ~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~ 435 (446)
-.+||.++|.+||+.++.++++..++|++.||..|.||||+||.++|++|++.|+++....|+++||..|++++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999999988899999999999999999999999999999999999999999999999998764
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.43 E-value=6.3e-14 Score=162.75 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=110.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcCCCC----------chhhhh------hCCC----------CCce--EEEEcCCCC
Q 013281 185 APLESYADIGGLDAQIQEIKEAVELPLTH----------PELYED------IGIK----------PPKG--VILYGEPGT 236 (446)
Q Consensus 185 ~~~~~~~di~Gl~~~i~~l~e~i~~pl~~----------~~~~~~------~g~~----------~~~~--vLL~GppGt 236 (446)
.+.++|.+|+|++++++.+.+.+..|+.+ ++.|+. .|+. +|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34579999999999999999999999844 667776 4444 4455 999999999
Q ss_pred cHHHHHHHHHHHh---CCcEEEEechhhh------------hhhcCC----chHHHHHHHHHHhhcCCeEEEEcCccccc
Q 013281 237 GKTLLAKAVANST---SATFLRVVGSELI------------QKYLGD----GPKLVRELFRVADDLSPSIVFIDEIDAVG 297 (446)
Q Consensus 237 GKT~Laraia~~~---~~~~i~v~~s~l~------------~~~~g~----~~~~v~~lf~~a~~~~p~IL~IDEid~l~ 297 (446)
|||+||++++.+. +.+.+.|+..+.. ++++++ +++.++.+|..|+...|++||+|++|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 4556666665533 456666 78899999999999999999999999999
Q ss_pred cccc---CCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 298 TKRY---DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 298 ~~r~---~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+.+. +.......-..+.+.++|.++++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 8843 111111233455688999999886666778777 77763
No 87
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.42 E-value=1.7e-13 Score=113.65 Aligned_cols=96 Identities=26% Similarity=0.575 Sum_probs=76.4
Q ss_pred hhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEecchhhhhh
Q 013281 88 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 167 (446)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~ 167 (446)
+.+++...+++.+.+++++.|+++|+.+|++.+.++++++++++++|++|++.+.+++|++.|+||++|.|+.+++.+++
T Consensus 13 ~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~ 92 (109)
T 2wg5_A 13 EDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVN 92 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEE
Confidence 33444556677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhcc
Q 013281 168 LLQDEVDPMVSVMKVE 183 (446)
Q Consensus 168 ~l~~~~~~~~~~~~~~ 183 (446)
+|+.+.||+++.|.++
T Consensus 93 iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 93 VLPTSKDPMVYGFEVE 108 (109)
T ss_dssp EEC-------------
T ss_pred eCCCCcCccchheEec
Confidence 9999999999998765
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=3.2e-12 Score=125.57 Aligned_cols=142 Identities=14% Similarity=0.193 Sum_probs=106.9
Q ss_pred CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEechhhhhhhcCC
Q 013281 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST------SATFLRVVGSELIQKYLGD 268 (446)
Q Consensus 195 Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~------~~~~i~v~~s~l~~~~~g~ 268 (446)
|.+++++.|+..+.. +- ...+|||||||||||++|+++|+.+ ...|+.++++. . ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHC-----------CC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 567788889888876 22 4579999999999999999999864 34677776542 0 12
Q ss_pred chHHHHHHHHHHhhc----CCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 013281 269 GPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (446)
Q Consensus 269 ~~~~v~~lf~~a~~~----~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld 344 (446)
+-..++.+++.+... ...|+||||+|.+ +...+..|+..|++ ...++++|++|+.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 334577777777543 2469999999999 45556666666653 346789999999999999
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHH
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~ 375 (446)
+++++ | .+.|++|+.++...++...+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99998 7 78999999999999988776
No 89
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.37 E-value=1.4e-12 Score=104.32 Aligned_cols=76 Identities=36% Similarity=0.596 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhcc
Q 013281 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 363 ~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~ 438 (446)
|.++|.+||+.|+.++++..++|++.||..|+||||+||.++|++|++.|+++....|+++||..|++++......
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999876443
No 90
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.29 E-value=4.3e-12 Score=127.96 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=122.7
Q ss_pred ccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhhhhh---
Q 013281 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQKY--- 265 (446)
Q Consensus 191 ~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~~~~--- 265 (446)
..++|.+..+.++.+.+... ......|+++|++||||+++|++++...+. .|+.++|+.+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 46789998888888777642 123456999999999999999999998765 39999998754321
Q ss_pred ----------cCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCC------CCC
Q 013281 266 ----------LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRG 329 (446)
Q Consensus 266 ----------~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~~~ 329 (446)
.|.... ....|+.|.. ++||||||+.+ +...|..|+.+|+.-.-.. ...
T Consensus 198 ~lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTR-KKGKLELADQ---GTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHHEECSCSSSSCCCC-EECHHHHTTT---SEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred HhcCccccccCCcccc-cCChHhhcCC---CeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceee
Confidence 111111 1234555544 79999999999 7789999999998632111 123
Q ss_pred CeEEEEEeCCC-------CCCChhhcCCCceeeEEEcCCCCHHHH----HHHHHHHHcc----CCCC----CccCHHHHH
Q 013281 330 DVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTR----RRIFQIHTSR----MTLA----DDVNLEEFV 390 (446)
Q Consensus 330 ~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er----~~Il~~~~~~----~~~~----~~~~l~~la 390 (446)
++++|+|||.. ..+.+.|.. |+. .+.+..|...+| ..++..++.. .... .+..+..|.
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 339 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYY--RLS-VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLM 339 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHH--HhC-CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 68999999963 123334444 443 334444444443 3444444432 2211 222355566
Q ss_pred HhCCCCcHHHHHHHHHHHHHHH
Q 013281 391 MTKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 391 ~~t~g~s~~di~~l~~~A~~~A 412 (446)
.+.+-.+.++++++++.|...+
T Consensus 340 ~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 340 KQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp TCCCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC
Confidence 6654457788888888877654
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.27 E-value=9.3e-12 Score=112.13 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=83.3
Q ss_pred CCCCCcccccC----cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEE
Q 013281 185 APLESYADIGG----LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRV 256 (446)
Q Consensus 185 ~~~~~~~di~G----l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v 256 (446)
....+|+++++ ...+++.+++++... .+..+.+++|+||||||||+|++++++.+ +..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNF----------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSC----------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhc----------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 34567888765 444555555555542 33446789999999999999999999876 5577778
Q ss_pred echhhhhhhc-----CCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCe
Q 013281 257 VGSELIQKYL-----GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (446)
Q Consensus 257 ~~s~l~~~~~-----g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 331 (446)
++.++...+. +... .++... ..|.+|+|||++... .+...+..+..+++... ..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~ 134 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDT----KFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLK 134 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCS----HHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTC
T ss_pred EHHHHHHHHHHHhcCchHH----HHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCC
Confidence 8877765432 1111 112221 257899999998542 14455667777776542 1346
Q ss_pred EEEEEeCCCC
Q 013281 332 KVILATNRIE 341 (446)
Q Consensus 332 ~vI~atn~~~ 341 (446)
.+|++||.+.
T Consensus 135 ~ii~tsn~~~ 144 (180)
T 3ec2_A 135 STIITTNYSL 144 (180)
T ss_dssp EEEEECCCCS
T ss_pred CEEEEcCCCh
Confidence 7888998754
No 92
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.24 E-value=1.1e-10 Score=119.41 Aligned_cols=218 Identities=17% Similarity=0.108 Sum_probs=132.1
Q ss_pred ccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHH-HHHhCCcEEEEech-----hhhhhhc
Q 013281 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV-ANSTSATFLRVVGS-----ELIQKYL 266 (446)
Q Consensus 193 i~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Larai-a~~~~~~~i~v~~s-----~l~~~~~ 266 (446)
|.|.+.++..|.-++...-.. +...-+|||.|+||| ||+||+++ ++.+....+ +.+. .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEE
Confidence 777777666555544431000 122237999999999 99999999 776544332 2221 1111100
Q ss_pred CC-chHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHh----cCCCCCCCeEEEEEeCCCC
Q 013281 267 GD-GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL----DGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 267 g~-~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~l----d~~~~~~~v~vI~atn~~~ 341 (446)
+. +...-...+..|.. +|+|||||+.+ ....+..|++.|++- .|..-..++.||+|+|...
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 00 00001122334433 79999999998 677889999998852 2221234789999999865
Q ss_pred -----------CCChhhcCCCceeeEEE-cCCCCHHH-------------HHHHHHHHHc--c--CCCCCccCHHHHH--
Q 013281 342 -----------SLDPALLRPGRIDRKIE-FPLPDIKT-------------RRRIFQIHTS--R--MTLADDVNLEEFV-- 390 (446)
Q Consensus 342 -----------~ld~al~r~gRf~~~i~-~~~P~~~e-------------r~~Il~~~~~--~--~~~~~~~~l~~la-- 390 (446)
.|++++++ ||+..+. +..|+.+. .+.++. +++ . ..+..+ ..+.|.
T Consensus 351 ~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~e-a~~yI~~~ 426 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEE-ARKRLEHW 426 (506)
T ss_dssp --CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHH-HHHHHHHH
T ss_pred ccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHH-HHHHHHHH
Confidence 78899999 9986444 34454332 222222 222 1 111111 111111
Q ss_pred ---------H------hCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhcc
Q 013281 391 ---------M------TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 438 (446)
Q Consensus 391 ---------~------~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~~ 438 (446)
. ...+.|++.+.++++.|...|..+.+..|+.+|+..|+.-+....++
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~ 489 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLET 489 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHH
Confidence 0 24578999999999999999999999999999999999987766544
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.24 E-value=9e-11 Score=141.91 Aligned_cols=138 Identities=21% Similarity=0.364 Sum_probs=97.4
Q ss_pred CceEEEEcCCCCcHHHHHHH-HHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHh---------------hcCCeEE
Q 013281 225 PKGVILYGEPGTGKTLLAKA-VANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD---------------DLSPSIV 288 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Lara-ia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~---------------~~~p~IL 288 (446)
.++|||+||||||||++|+. +++..+..++.++++.... ...+...++... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 57899999999999999955 4444467888888776432 234444444321 1124699
Q ss_pred EEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCC--------CCeEEEEEeCCCC-----CCChhhcCCCceee
Q 013281 289 FIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR--------GDVKVILATNRIE-----SLDPALLRPGRIDR 355 (446)
Q Consensus 289 ~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--------~~v~vI~atn~~~-----~ld~al~r~gRf~~ 355 (446)
||||++.....++ +.....+.|.++++. .++... .++.+|+|+|++. .++++++| || .
T Consensus 1341 FiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 9999987543332 223455666666643 332211 2689999999984 79999999 99 6
Q ss_pred EEEcCCCCHHHHHHHHHHHHcc
Q 013281 356 KIEFPLPDIKTRRRIFQIHTSR 377 (446)
Q Consensus 356 ~i~~~~P~~~er~~Il~~~~~~ 377 (446)
.+.++.|+.+++..|+..++..
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999988754
No 94
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.22 E-value=2.4e-11 Score=95.94 Aligned_cols=75 Identities=45% Similarity=0.748 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhhhc
Q 013281 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 437 (446)
Q Consensus 363 ~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~~~ 437 (446)
|.++|.+||+.|+.++++..++++..||..|+||||+||.++|++|++.|+++....|+++||..|++++.....
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 678999999999999998889999999999999999999999999999999999999999999999999876544
No 95
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=99.18 E-value=2.7e-11 Score=95.59 Aligned_cols=75 Identities=32% Similarity=0.612 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEecchhhhhhcccc
Q 013281 97 KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQD 171 (446)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~ 171 (446)
++...+++++.|+++|+.+|++.+.+|+++++++++++++|++++.+++|++.|+||++|+|+.+++.++++|+.
T Consensus 3 ev~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 3 ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 455678889999999999999999999999999999999999999999999999999999999999999999875
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.17 E-value=3.4e-09 Score=104.36 Aligned_cols=191 Identities=21% Similarity=0.230 Sum_probs=119.3
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh---
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI--- 262 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~--- 262 (446)
|...-..++|.+..++.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 444556789999999999998864 1 5799999999999999999999875 6677765431
Q ss_pred ---------h---hhcC-------------------------CchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCC
Q 013281 263 ---------Q---KYLG-------------------------DGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305 (446)
Q Consensus 263 ---------~---~~~g-------------------------~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~ 305 (446)
. ..++ .....+..+...+....|.+|+|||++.+.... .
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~ 145 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----S 145 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----T
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----c
Confidence 0 0011 011122222222322348999999999984210 0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---------CCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHc
Q 013281 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE---------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (446)
Q Consensus 306 ~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~---------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~ 376 (446)
.........+..++... .++.+|+++.... .....+. +|+...+.+++.+.++..+++...+.
T Consensus 146 ~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 146 RGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp TTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHH
Confidence 01233444444444331 4677888775421 1112232 36667899999999999999988765
Q ss_pred cCCCC-CccCHHHHHHhCCCCcHHHHHHHHH
Q 013281 377 RMTLA-DDVNLEEFVMTKDEFSGADIKAICT 406 (446)
Q Consensus 377 ~~~~~-~~~~l~~la~~t~g~s~~di~~l~~ 406 (446)
..... .+..+..+...+.| .+.-+..++.
T Consensus 218 ~~~~~~~~~~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 218 EVNLDVPENEIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp TTTCCCCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 44332 23346677788887 4555666554
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.17 E-value=6.6e-12 Score=98.99 Aligned_cols=71 Identities=35% Similarity=0.530 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhh
Q 013281 365 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 435 (446)
Q Consensus 365 ~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~v~~~ 435 (446)
++|.+||+.|+.++++..++|+..||..|+||||+||.++|++|++.|+++....|+++||..|+.+++..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~ 71 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKT 71 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC-
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcC
Confidence 46899999999999888899999999999999999999999999999999999999999999999998644
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.15 E-value=2.3e-09 Score=105.78 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=118.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh---
Q 013281 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI--- 262 (446)
Q Consensus 186 ~~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~--- 262 (446)
+......++|.+..++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++.+++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 44455678999999999988 642 3799999999999999999999987777888776430
Q ss_pred --------hh-----------------hcCC------------------chHHHHHHHHHHhhc--CCeEEEEcCccccc
Q 013281 263 --------QK-----------------YLGD------------------GPKLVRELFRVADDL--SPSIVFIDEIDAVG 297 (446)
Q Consensus 263 --------~~-----------------~~g~------------------~~~~v~~lf~~a~~~--~p~IL~IDEid~l~ 297 (446)
.. ..+. ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 00 0000 011233444443332 38899999999985
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CChhhcCCCceeeEEEcCCCCHHHHH
Q 013281 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES---------LDPALLRPGRIDRKIEFPLPDIKTRR 368 (446)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~---------ld~al~r~gRf~~~i~~~~P~~~er~ 368 (446)
... ..+....+..+++. ..++.+|+++..... ....+ .+|+...+.+++.+.++..
T Consensus 151 ~~~-------~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 151 KLR-------GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp GCT-------TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHH
T ss_pred ccC-------chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHH
Confidence 310 11122333334332 136778888764321 11122 2366678999999999999
Q ss_pred HHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHH
Q 013281 369 RIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTE 407 (446)
Q Consensus 369 ~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~ 407 (446)
+++...+.......+ +...+...+.| ++.-+..++..
T Consensus 216 ~~l~~~~~~~~~~~~-~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 216 EFLRRGFQEADIDFK-DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHTCCCC-CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-cHHHHHHHhCC-CHHHHHHHHHH
Confidence 999887653332222 23778888887 45566666543
No 99
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.01 E-value=3.1e-10 Score=103.82 Aligned_cols=99 Identities=25% Similarity=0.241 Sum_probs=63.0
Q ss_pred CCCcccccCcHH----HHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech
Q 013281 187 LESYADIGGLDA----QIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (446)
Q Consensus 187 ~~~~~di~Gl~~----~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s 259 (446)
..+|+++++.+. +++.+..++...-. ...+.+++|+||||||||+||+++++.+ +.+++.++++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP---------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 457888776543 44455555554210 0123789999999999999999999987 5688889998
Q ss_pred hhhhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCcccc
Q 013281 260 ELIQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDAV 296 (446)
Q Consensus 260 ~l~~~~~g~~-~~~v~~lf~~a~~~~p~IL~IDEid~l 296 (446)
++........ ...+..++..... +.+|||||++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 8765432111 0001222333322 369999999775
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.98 E-value=8e-10 Score=96.96 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=69.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCccccccccc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~ 301 (446)
...++|+||+|+|||+|++++++.. +..++++++.++... +....|.+|+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~---- 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG---- 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC----
Confidence 5679999999999999999999987 666888888776433 112357899999998873
Q ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCCC--hhhcCCCceeeEE
Q 013281 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IESLD--PALLRPGRIDRKI 357 (446)
Q Consensus 302 ~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~-~~~ld--~al~r~gRf~~~i 357 (446)
...+..+..+++.+.. .+..++|+|||. +..+. +++.+ |+..-.
T Consensus 97 -------~~~~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~ 143 (149)
T 2kjq_A 97 -------NEEQALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYCL 143 (149)
T ss_dssp -------SHHHHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGSE
T ss_pred -------hHHHHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcCe
Confidence 1126677777776532 223336667764 43332 77776 765433
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.93 E-value=3.2e-10 Score=111.24 Aligned_cols=122 Identities=22% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~~--~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~ 298 (446)
|+.+.+.++|+||||||||+||.++|...+.+ |+.+...+.++.+.......+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 44555668999999999999999999875444 55542233333333444555556666665544 999999999964
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhh
Q 013281 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPAL 347 (446)
Q Consensus 299 ~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al 347 (446)
...+....+ ...+.+.+++..+.++....++.+|+++|. ...++++
T Consensus 197 ~~~~~s~~G--~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSG--GISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSSH
T ss_pred ccccccccc--hHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchhH
Confidence 432211100 112334444444443333446788898884 4555553
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.90 E-value=3e-08 Score=120.21 Aligned_cols=166 Identities=14% Similarity=0.186 Sum_probs=113.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~ 304 (446)
..++++.||+|||||.+++++|+.+|.+++.++|++-.. ...+..+|..+...+ +++++||++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc--------
Confidence 568999999999999999999999999999999987433 345566776666544 79999999998
Q ss_pred CCCcHHHHHHHHHHHHHhc-------------C--CCCCCCeEEEEEeCC----CCCCChhhcCCCceeeEEEcCCCCHH
Q 013281 305 SGGEREIQRTMLELLNQLD-------------G--FDSRGDVKVILATNR----IESLDPALLRPGRIDRKIEFPLPDIK 365 (446)
Q Consensus 305 ~~~~~~~~~~l~~lL~~ld-------------~--~~~~~~v~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P~~~ 365 (446)
..++...+.+.+..+. | +....++.|++|.|. ...|++++.+ || +.+.+..||.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 5666666644443221 1 112345778888884 4579999988 88 68999999998
Q ss_pred HHHHHHHHHHccCCCCCcc-----CH-HHHHHhC-----CCCcHHHHHHHHHHHHHHH
Q 013281 366 TRRRIFQIHTSRMTLADDV-----NL-EEFVMTK-----DEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 366 er~~Il~~~~~~~~~~~~~-----~l-~~la~~t-----~g~s~~di~~l~~~A~~~A 412 (446)
...+|+-... .+...... .+ ..+.... ..|.-+.++.++..|+...
T Consensus 784 ~i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 784 TIAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 8887753321 11111110 01 1111111 2367889999998877654
No 103
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.86 E-value=2.2e-09 Score=105.47 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=61.5
Q ss_pred CCcccccCcH----HHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEech
Q 013281 188 ESYADIGGLD----AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGS 259 (446)
Q Consensus 188 ~~~~di~Gl~----~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~----~~~i~v~~s 259 (446)
.+|+++.+.. .++..+.+++... .-....+++|+||||||||+||.++|+.+. .+++.++++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQY----------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHC----------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhc----------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 5788877533 2444455555542 111357899999999999999999998654 688889988
Q ss_pred hhhhhhcCCch-HHHHHHHHHHhhcCCeEEEEcCcccc
Q 013281 260 ELIQKYLGDGP-KLVRELFRVADDLSPSIVFIDEIDAV 296 (446)
Q Consensus 260 ~l~~~~~g~~~-~~v~~lf~~a~~~~p~IL~IDEid~l 296 (446)
++......... ......+.... .+.+|||||++..
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 87765433211 11111222222 3469999999765
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.79 E-value=1.1e-08 Score=94.16 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=80.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH--------hC-CcEEEEechhhhhhhc----------CCchH--HHHHHHHHH--h
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS--------TS-ATFLRVVGSELIQKYL----------GDGPK--LVRELFRVA--D 281 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~--------~~-~~~i~v~~s~l~~~~~----------g~~~~--~v~~lf~~a--~ 281 (446)
+..+|++|+||||||++|.+.+.. .+ .+++..++.++..... ..... ....+++.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 346899999999999999886543 34 6666666665543221 11100 012233321 1
Q ss_pred hcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCC
Q 013281 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 361 (446)
....+||+|||++.+.+.+.+.. . . ..++..+.. .....+-+|++|+.+..++.++++ |+...+++..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~-e-~-------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGS-K-I-------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTC-C-C-------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred ccCceEEEEEChhhhccCccccc-h-h-------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 23468999999999975542211 1 1 123333332 223467789999889999999987 9999999987
Q ss_pred CCHH
Q 013281 362 PDIK 365 (446)
Q Consensus 362 P~~~ 365 (446)
|...
T Consensus 153 ~~~~ 156 (199)
T 2r2a_A 153 NKMG 156 (199)
T ss_dssp CSSC
T ss_pred cccC
Confidence 6443
No 105
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.62 E-value=2.8e-08 Score=100.17 Aligned_cols=119 Identities=23% Similarity=0.274 Sum_probs=76.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccc-c
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT-K 299 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~-~ 299 (446)
++.++..++|+||||||||||+++++...+..++.+..+.- . . -|.........++++||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~-------~---~--~~~lg~~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD-------R---L--NFELGVAIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT-------T---H--HHHHGGGTTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch-------h---H--HHHHHHhcchhHHHHHHHHHHHHHH
Confidence 67778889999999999999999999988776655332210 0 0 01111112336789999999864 2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCC
Q 013281 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361 (446)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 361 (446)
+. ...+ . ... .+..+.+.++| .+.|+++||+++.+ +++++|+|++..+....
T Consensus 233 r~-l~~~-~-~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RD-LPSG-Q-GIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TT-CCCC-S-HHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hh-cccc-C-cch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 21 1111 1 111 22333444443 45688999999999 78999999987655543
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.61 E-value=7e-08 Score=88.62 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=62.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD 302 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~ 302 (446)
+..+++|||||||||||++|.++|+.+...++.+..+. ..+ .+..+. ...+|+|||+|.-+
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~--~~kIiiLDEad~~~----- 116 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLT--DTKVAMLDDATTTC----- 116 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGT--TCSSEEEEEECHHH-----
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccC--CCCEEEEECCCchh-----
Confidence 33467999999999999999999999865443221110 000 011111 23599999997431
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCC----C--C-----CCeEEEEEeCCC---CCCChhhcCCCceeeEEEcCCC
Q 013281 303 AHSGGEREIQRTMLELLNQLDGFD----S--R-----GDVKVILATNRI---ESLDPALLRPGRIDRKIEFPLP 362 (446)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~~ld~~~----~--~-----~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~~~P 362 (446)
.......+..+| ++.. . + ....+|.|||.. +..-+.|.+ |+. .+.|+.|
T Consensus 117 -----~~~~d~~lrn~l---dG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 117 -----WTYFDTYMRNAL---DGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp -----HHHHHHHCHHHH---HTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred -----HHHHHHHHHHHh---CCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 122223333333 3320 0 1 134789999973 223345766 884 7777743
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.56 E-value=5.7e-07 Score=89.08 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=109.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CC-cEEEEechhhhhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCccc-
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SA-TFLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDA- 295 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~-~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~----~~~p~IL~IDEid~- 295 (446)
+..+|||||+|+||++.++++++.+ +. ++..+... + ...++.+++.+. .....||+|||++.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 4579999999999999999998865 21 22222111 0 012333443332 23457999999998
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC------CCChhhcCCCceeeEEEcCCCCHHHHHH
Q 013281 296 VGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE------SLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (446)
Q Consensus 296 l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~------~ld~al~r~gRf~~~i~~~~P~~~er~~ 369 (446)
+. ...+..|...+++ ...++++|++++..+ .+.+++.+ |+ ..+.|..++..+...
T Consensus 89 l~-----------~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 89 PN-----------AAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CC-----------TTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CC-----------hHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 72 2344555555542 234666776665533 34566766 76 478999999999999
Q ss_pred HHHHHHccCCCC-CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013281 370 IFQIHTSRMTLA-DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEK 431 (446)
Q Consensus 370 Il~~~~~~~~~~-~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~~~~~It~~d~~~A~~~ 431 (446)
+++..+...++. ++..+..|+..+.| +.+++.+.+......+ ....||.+++...+..
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 999888776654 23345667776665 5555555555544332 3457888887766543
No 108
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.56 E-value=1.4e-07 Score=111.21 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=79.5
Q ss_pred chhhhhhC---CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh----hhhcC------------CchH
Q 013281 214 PELYEDIG---IKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI----QKYLG------------DGPK 271 (446)
Q Consensus 214 ~~~~~~~g---~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~----~~~~g------------~~~~ 271 (446)
+++...+| +.++++++||||||||||+||.+++.+. +.....++..+.. ....| ..+.
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~ 1492 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1492 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHH
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHH
Confidence 44555555 7888999999999999999999998764 4456666655332 22222 3456
Q ss_pred HHHHHHHHHhhcCCeEEEEcCcccccccc---cCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 013281 272 LVRELFRVADDLSPSIVFIDEIDAVGTKR---YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336 (446)
Q Consensus 272 ~v~~lf~~a~~~~p~IL~IDEid~l~~~r---~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~a 336 (446)
.++.++..++..+|++||||+++.+.+.. .+...+......+.+.++|.++.++....++.||++
T Consensus 1493 ~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1493 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 67777778888899999999999887642 111111111123455566666655544556655554
No 109
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=98.47 E-value=3.8e-07 Score=84.82 Aligned_cols=84 Identities=24% Similarity=0.251 Sum_probs=74.6
Q ss_pred hhhcchhHHHHHHHHHHHHHhhCCCcccccccccccCCeEEEecccCCceeEEecccccccccCCcceEEEecchhhhhh
Q 013281 88 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVG 167 (446)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~ 167 (446)
.+.++...+++...+++++.|+.+|+.+|+|.+.+++..++|.+ +|++|++.+.+++|.+.|+||..|.|+ .++.+++
T Consensus 74 ~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~s-~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVe 151 (251)
T 3m9b_A 74 METLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVFT-SGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVE 151 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEEC-SSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEe-CCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEE
Confidence 33555666778888999999999999999999999999999984 789999999999999999999999995 6899999
Q ss_pred cccccc
Q 013281 168 LLQDEV 173 (446)
Q Consensus 168 ~l~~~~ 173 (446)
+++.+.
T Consensus 152 vLp~E~ 157 (251)
T 3m9b_A 152 AGTFEA 157 (251)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 998764
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.46 E-value=4.8e-07 Score=110.61 Aligned_cols=138 Identities=19% Similarity=0.269 Sum_probs=92.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEechhhhhhhcCCchHHHHHHHHHH----h----h--------cCCeE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSELIQKYLGDGPKLVRELFRVA----D----D--------LSPSI 287 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~-~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a----~----~--------~~p~I 287 (446)
.++|||+||||||||+++..+...+ +.+++.++++.-. .+..+...++.. . . ....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 5679999999999998876554443 5567788877632 234444444421 0 0 11249
Q ss_pred EEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCC-------CCCeEEEEEeCCC-----CCCChhhcCCCceee
Q 013281 288 VFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS-------RGDVKVILATNRI-----ESLDPALLRPGRIDR 355 (446)
Q Consensus 288 L~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-------~~~v~vI~atn~~-----~~ld~al~r~gRf~~ 355 (446)
+||||++.-.... -+.......|.++++.-.-++. -.++.+|+|+|.+ ..++++++| ||.
T Consensus 1378 lFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~- 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP- 1449 (3245)
T ss_dssp EEETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-
T ss_pred EEecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-
Confidence 9999998643222 1233455666677764221111 2468899999987 369999999 996
Q ss_pred EEEcCCCCHHHHHHHHHHHHc
Q 013281 356 KIEFPLPDIKTRRRIFQIHTS 376 (446)
Q Consensus 356 ~i~~~~P~~~er~~Il~~~~~ 376 (446)
.+.++.|+.++...|+..++.
T Consensus 1450 vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 799999999999999876654
No 111
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.41 E-value=9.8e-07 Score=79.46 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATF 253 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~ 253 (446)
.+.|.||+|+|||||++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876544
No 112
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.40 E-value=9.4e-07 Score=84.47 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=68.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~ 304 (446)
.++++||||||||||++|++||+.+.. +-.++.+. ..+ .|.. .....|+++||.....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~--~~~k~i~l~Ee~~~~~------- 161 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFND--CVDKMVIWWEEGKMTA------- 161 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGG--GSSCSEEEECSCCEET-------
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------cccc--ccccEEEEeccccchh-------
Confidence 457999999999999999999997654 22222211 000 1111 1223567777776551
Q ss_pred CCCcHHHHHHHHHHHH----HhcCC----CCCCCeEEEEEeCC-C----------CCCChhhcCCCceeeEEEcC-----
Q 013281 305 SGGEREIQRTMLELLN----QLDGF----DSRGDVKVILATNR-I----------ESLDPALLRPGRIDRKIEFP----- 360 (446)
Q Consensus 305 ~~~~~~~~~~l~~lL~----~ld~~----~~~~~v~vI~atn~-~----------~~ld~al~r~gRf~~~i~~~----- 360 (446)
+.+..+-.++. .++.- .......+|++||. + +...++|.+ |+. .+.|+
T Consensus 162 -----d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~~-~f~F~~~~p~ 233 (267)
T 1u0j_A 162 -----KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RMF-KFELTRRLDH 233 (267)
T ss_dssp -----TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TEE-EEECCSCCCT
T ss_pred -----HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hEE-EEECCCcCCc
Confidence 12233333332 01100 01135678999986 1 234567877 874 77887
Q ss_pred ---CCCHHHHHHHHHHH
Q 013281 361 ---LPDIKTRRRIFQIH 374 (446)
Q Consensus 361 ---~P~~~er~~Il~~~ 374 (446)
..+.++....|+..
T Consensus 234 ~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 234 DFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp TSCCCCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 45666777777643
No 113
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.37 E-value=4.6e-06 Score=102.19 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=110.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcCCchHHHHHHHHHHhhcCCeEEEEcCcccccccccCCC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g~~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~ 304 (446)
..|..+.||+|||||.+++.+|+.+|.+++.++|++-.. ...+..+|.-+... .+..++|||+.+
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-------- 668 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-------- 668 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS--------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC--------
Confidence 446789999999999999999999999999999987432 33455566655553 378999999998
Q ss_pred CCCcHHHHHHHHHHHHHh-------------c-C--CCCCCCeEEEEEeCC----CCCCChhhcCCCceeeEEEcCCCCH
Q 013281 305 SGGEREIQRTMLELLNQL-------------D-G--FDSRGDVKVILATNR----IESLDPALLRPGRIDRKIEFPLPDI 364 (446)
Q Consensus 305 ~~~~~~~~~~l~~lL~~l-------------d-~--~~~~~~v~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P~~ 364 (446)
+.++...+.+.+..+ . | +.-..++.|++|.|. ...|+.+|.. || +.|.+..||.
T Consensus 669 ---~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 669 ---EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 666666666555421 1 1 112346778888884 3579999988 99 5799999999
Q ss_pred HHHHHHHHHHHccCCCCCccC-------HHHHHHh------CCCCcHHHHHHHHHHHHHH
Q 013281 365 KTRRRIFQIHTSRMTLADDVN-------LEEFVMT------KDEFSGADIKAICTEAGLL 411 (446)
Q Consensus 365 ~er~~Il~~~~~~~~~~~~~~-------l~~la~~------t~g~s~~di~~l~~~A~~~ 411 (446)
+...+|+-. ..++..... +-.++.. -..|--+.|++++..|+..
T Consensus 743 ~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 743 EMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 877776422 222221111 1111111 1235667888888877653
No 114
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.14 E-value=9.3e-05 Score=78.31 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=98.6
Q ss_pred CCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHH-------hC--CcEEEEec
Q 013281 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS-------TS--ATFLRVVG 258 (446)
Q Consensus 188 ~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~-------~~--~~~i~v~~ 258 (446)
.....++|.+..+..|.+.+... ....+.|+|+||+|+|||+||..+++. .. .-++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 34456899999999999988642 122456999999999999999998742 21 22333332
Q ss_pred h---hhhhh------hcC----------CchHHHHHHHHH-Hhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHH
Q 013281 259 S---ELIQK------YLG----------DGPKLVRELFRV-ADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLE 317 (446)
Q Consensus 259 s---~l~~~------~~g----------~~~~~v~~lf~~-a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~ 317 (446)
. .+... .++ .....+...+.. ... ..|.+|+||+++.. .
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~---- 249 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W---- 249 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H----
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H----
Confidence 1 11111 111 111122222222 222 25789999999753 0
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEE-cCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCC
Q 013281 318 LLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIE-FPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEF 396 (446)
Q Consensus 318 lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~-~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~ 396 (446)
.+.. + ..+..||+||....... ... +.. ..+. ....+.++-.++|..++.............|+..+.|.
T Consensus 250 ~l~~---l--~~~~~ilvTsR~~~~~~--~~~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 250 VLKA---F--DSQCQILLTTRDKSVTD--SVM-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS 320 (591)
T ss_dssp HHHT---T--CSSCEEEEEESCGGGGT--TCC-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC
T ss_pred HHHH---h--cCCCeEEEECCCcHHHH--hcC-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC
Confidence 1222 2 24567888886543211 111 122 1222 24678899999998887542111233467888999885
Q ss_pred cHHHHHHH
Q 013281 397 SGADIKAI 404 (446)
Q Consensus 397 s~~di~~l 404 (446)
+--|..+
T Consensus 321 -PLal~~~ 327 (591)
T 1z6t_A 321 -PLVVSLI 327 (591)
T ss_dssp -HHHHHHH
T ss_pred -cHHHHHH
Confidence 4444443
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.13 E-value=7.9e-06 Score=75.24 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=61.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh----hhh--hcC------------------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL----IQK--YLG------------------------ 267 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l----~~~--~~g------------------------ 267 (446)
|+.+...++|+||||+|||+|++.++... +..++.++.... ... ..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 45566779999999999999999998643 445555543211 110 000
Q ss_pred ------CchHHHHHHHHHHhhcCCe--EEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 268 ------DGPKLVRELFRVADDLSPS--IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 268 ------~~~~~v~~lf~~a~~~~p~--IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
........+...+....|. +|+|||+..+... +......+...|..+. ...++.||+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~--------d~~~~~~~~~~l~~~~---~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD--------KPAMARKISYYLKRVL---NKWNFTIYATSQY 167 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS--------CGGGHHHHHHHHHHHH---HHTTEEEEEEEC-
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC--------CHHHHHHHHHHHHHHH---HhCCCeEEEEecc
Confidence 1122233344445556788 9999999987421 1112233444443331 1235778888765
Q ss_pred C
Q 013281 340 I 340 (446)
Q Consensus 340 ~ 340 (446)
.
T Consensus 168 ~ 168 (235)
T 2w0m_A 168 A 168 (235)
T ss_dssp -
T ss_pred C
Confidence 4
No 116
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.09 E-value=6e-06 Score=82.39 Aligned_cols=117 Identities=17% Similarity=0.237 Sum_probs=66.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh----hhc------------CCchHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----KYL------------GDGPKLVRELFRVAD 281 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~----~~~------------g~~~~~v~~lf~~a~ 281 (446)
|+.+...++|+||||+|||+|+..++..+ +..+++++...... ..+ ...+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45667779999999999999999998764 55677777654221 001 111222222222333
Q ss_pred hcCCeEEEEcCcccccc-cccCCCCCCc--HHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 282 DLSPSIVFIDEIDAVGT-KRYDAHSGGE--REIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~-~r~~~~~~~~--~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
...+.+|+||.+..+.+ ...+...+.. ....+.+.+++..+..+....++.||++.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46789999999998875 2222211111 02234444444444333334456666654
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.07 E-value=1.3e-05 Score=80.44 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=50.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh----hcC------------CchHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK----YLG------------DGPKLVRELFRVAD 281 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~----~~g------------~~~~~v~~lf~~a~ 281 (446)
|+.+...++|+||||+|||+||..++... +.++++++...-... ..| ..+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45567789999999999999999988754 557777765432111 111 11222222223334
Q ss_pred hcCCeEEEEcCcccccc
Q 013281 282 DLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~ 298 (446)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45789999999999974
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.04 E-value=1.9e-05 Score=73.75 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=64.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHH--HH--hCCcEEEEechhhhh------hhcCC----------------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVA--NS--TSATFLRVVGSELIQ------KYLGD---------------------- 268 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia--~~--~~~~~i~v~~s~l~~------~~~g~---------------------- 268 (446)
|+.+...+.|.||+|+|||||++.++ .. .+...+.+....... ..++-
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 45667789999999999999999998 32 234444444321110 00010
Q ss_pred --------------chHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 013281 269 --------------GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVI 334 (446)
Q Consensus 269 --------------~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI 334 (446)
.......+........|.+|+|||...+..... ........+..++..+. ..++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEE
Confidence 112223333444556899999999987753210 12233444666666553 1256788
Q ss_pred EEeCCCCCC
Q 013281 335 LATNRIESL 343 (446)
Q Consensus 335 ~atn~~~~l 343 (446)
++|+..+..
T Consensus 177 ~vtH~~~~~ 185 (251)
T 2ehv_A 177 LTTEAPDPQ 185 (251)
T ss_dssp EEECCC---
T ss_pred EEECCCCCC
Confidence 888765543
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.04 E-value=5.6e-06 Score=82.52 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=50.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh----hhcC------------CchHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----KYLG------------DGPKLVRELFRVAD 281 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~----~~~g------------~~~~~v~~lf~~a~ 281 (446)
|+.+...++|+||||+|||+||..++... +..+++++...-.. ...| ..+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 55667779999999999999999998653 45666666543211 1111 11222222233344
Q ss_pred hcCCeEEEEcCcccccc
Q 013281 282 DLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~ 298 (446)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 120
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.02 E-value=1.2e-05 Score=74.65 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=51.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH--h-------CCcEEEEechhh------hh--hhcCCc--------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS--T-------SATFLRVVGSEL------IQ--KYLGDG-------------- 269 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~--~-------~~~~i~v~~s~l------~~--~~~g~~-------------- 269 (446)
|+.+...++|+||||+|||+|++.++.. . +...+++++... .. ..++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5666778999999999999999999984 2 346777766441 00 011111
Q ss_pred -hH----HHHHHHHHHhhcCCeEEEEcCcccccc
Q 013281 270 -PK----LVRELFRVADDLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 270 -~~----~v~~lf~~a~~~~p~IL~IDEid~l~~ 298 (446)
.. .+..+........|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 11 122233444456789999999998863
No 121
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.01 E-value=9.8e-05 Score=84.35 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=102.4
Q ss_pred CCCcccccCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---C----CcEEEEech
Q 013281 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---S----ATFLRVVGS 259 (446)
Q Consensus 187 ~~~~~di~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~---~----~~~i~v~~s 259 (446)
+.....++|.+..+++|.+.+... -...+-|.|+|+.|+|||+||+.+++.. . ..++.++.+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 344566899999999999988542 1234568899999999999999988752 2 223344432
Q ss_pred hh-----h-------hhh---------cCCchHHHHHHHHHHhhc--CCeEEEEcCcccccccccCCCCCCcHHHHHHHH
Q 013281 260 EL-----I-------QKY---------LGDGPKLVRELFRVADDL--SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML 316 (446)
Q Consensus 260 ~l-----~-------~~~---------~g~~~~~v~~lf~~a~~~--~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~ 316 (446)
.. . ... .......+...+...... .+.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 21 0 000 011122233333332222 36899999997541
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCC-CCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCC
Q 013281 317 ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL-PDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 395 (446)
Q Consensus 317 ~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~-P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g 395 (446)
.+..+ ..+..||+||........ +. .....+.++. .+.++-.++|..+.....-.......+|+..+.|
T Consensus 250 ----~~~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g 319 (1249)
T 3sfz_A 250 ----VLKAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKG 319 (1249)
T ss_dssp ----HHTTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTT
T ss_pred ----HHHhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCC
Confidence 11222 245678888876543211 11 2234577775 8899999999887754332223346788999988
Q ss_pred Cc
Q 013281 396 FS 397 (446)
Q Consensus 396 ~s 397 (446)
+.
T Consensus 320 lP 321 (1249)
T 3sfz_A 320 SP 321 (1249)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.99 E-value=7.8e-06 Score=74.87 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~ 260 (446)
|+.+..-++|+||||+|||+|++.++...+..+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666778999999999999999999986666777776543
No 123
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.97 E-value=1.3e-05 Score=78.79 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=66.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechhhh--h------hhcCC---------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSELI--Q------KYLGD--------------- 268 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~l~--~------~~~g~--------------- 268 (446)
|+.+...++|+||||+|||++|..+|... +..+++++...-. . ...|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56667789999999999999999999864 4567777765420 0 00111
Q ss_pred -ch---HHHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 013281 269 -GP---KLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (446)
Q Consensus 269 -~~---~~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~at 337 (446)
.. ..+..+...... ..+.+|+||.+..+.....+.. +...+.+..+.+++..+..+....++.||++.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 11 122334444444 6789999999999864322111 11112223344444444332223356666654
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.90 E-value=7.1e-06 Score=96.99 Aligned_cols=128 Identities=18% Similarity=0.254 Sum_probs=79.7
Q ss_pred CCCchhhhhh---CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh----cCC--------chHH
Q 013281 211 LTHPELYEDI---GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY----LGD--------GPKL 272 (446)
Q Consensus 211 l~~~~~~~~~---g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~~~----~g~--------~~~~ 272 (446)
...+++..-+ |+.+...++|+|+||+|||+||..+|..+ +.+++++++....... +|- .+..
T Consensus 715 TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~ 794 (2050)
T 3cmu_A 715 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 794 (2050)
T ss_dssp CSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSS
T ss_pred cCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCC
Confidence 3445666666 47888889999999999999999999866 3468888876544332 221 1122
Q ss_pred HHHHHHHHhh----cCCeEEEEcCcccccc-cccCCCCC--CcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 273 VRELFRVADD----LSPSIVFIDEIDAVGT-KRYDAHSG--GEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 273 v~~lf~~a~~----~~p~IL~IDEid~l~~-~r~~~~~~--~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
+..++..++. ..|++||||.++.+.. ...+...+ ...-..+.+.+++..|..+....++.||+++.
T Consensus 795 i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 4444444443 6789999999999975 22111111 11111233555555555444456777877764
No 125
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.89 E-value=1.6e-05 Score=78.99 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=65.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechhhh------h--hhcCC---------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSELI------Q--KYLGD--------------- 268 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~l~------~--~~~g~--------------- 268 (446)
|+.+..-++|+||||+|||+||..+|... +..+++++..... . ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 56666779999999999999999999862 4567777664420 0 00111
Q ss_pred -ch---HHHHHHHHHHhh--cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 013281 269 -GP---KLVRELFRVADD--LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (446)
Q Consensus 269 -~~---~~v~~lf~~a~~--~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn 338 (446)
.. ..+..+...... ..+.+|+||.+..+.....+.. +...+.+..+.+++..+..+....++.||++..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 11 112223344444 5788999999999874321110 111112223344443333222234566666654
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.88 E-value=1.7e-05 Score=79.16 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=51.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh----hhcCC-----------chHHHHHHHH-HHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----KYLGD-----------GPKLVRELFR-VAD 281 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~----~~~g~-----------~~~~v~~lf~-~a~ 281 (446)
|+.+...++|+|+||+|||+||..++... +..+++++...-.. ...|. ....+..++. ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45667789999999999999999988754 55777777632111 11111 1122233332 233
Q ss_pred hcCCeEEEEcCcccccc
Q 013281 282 DLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~ 298 (446)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45789999999999864
No 127
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.87 E-value=5.6e-05 Score=77.90 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=36.4
Q ss_pred hhhcccCCCCCccccc-CcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 179 VMKVEKAPLESYADIG-GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 179 ~~~~~~~~~~~~~di~-Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
..+..++.+.+|+++- ++..++..+...+... ...++|.|+||||||+++.+++..+
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~--------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEK--------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHSS--------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhcC--------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4466777888898875 5555666665555541 2379999999999999999998865
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.85 E-value=2.6e-05 Score=71.81 Aligned_cols=29 Identities=38% Similarity=0.511 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
|+.+..-+.|+||+|+|||||++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 55666779999999999999999999843
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.82 E-value=1e-05 Score=73.06 Aligned_cols=31 Identities=16% Similarity=0.048 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRV 256 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~---~~~~i~v 256 (446)
.-++++||+|+|||+++..++... +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999996666543 4444443
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.81 E-value=4.5e-05 Score=77.26 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=63.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechhhh--------hhhcCCch-------------
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSELI--------QKYLGDGP------------- 270 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~l~--------~~~~g~~~------------- 270 (446)
|+.+..-++|+||||+|||+|++.++-.. +...++++..... ...+|-..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56677789999999999999999776432 2346777664421 01111111
Q ss_pred ------HHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 013281 271 ------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (446)
Q Consensus 271 ------~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~ 339 (446)
..+..+........|.+|+||++..+....... .+...+.++.+.+++..+..+....++.||+++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 112223333444678999999998886433221 11122233333333333332222345677777654
No 131
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.77 E-value=5.4e-05 Score=73.95 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=49.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhh----hhcCC-----------chHHH-HHHHHH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVVGSELIQ----KYLGD-----------GPKLV-RELFRV 279 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~-----~~~~i~v~~s~l~~----~~~g~-----------~~~~v-~~lf~~ 279 (446)
|+.+. .++|+||||+|||+|+..++... +..+++++..+-.. ..+|. ....+ ..+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 68999999999999988776543 56778887654221 11111 11111 222222
Q ss_pred ---HhhcCCeEEEEcCcccccc
Q 013281 280 ---ADDLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 280 ---a~~~~p~IL~IDEid~l~~ 298 (446)
.+...|.+|+||-|..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2455799999999999975
No 132
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.76 E-value=0.00013 Score=74.78 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCc---HHHHHHHHHHHHHhcC-----CCCCCCeEEEEEe---
Q 013281 269 GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE---REIQRTMLELLNQLDG-----FDSRGDVKVILAT--- 337 (446)
Q Consensus 269 ~~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~---~~~~~~l~~lL~~ld~-----~~~~~~v~vI~at--- 337 (446)
.....+..+..|..+ ++||+||||.++..... .+++ ..+|+.|+.+++--.. .....+|.+|+|+
T Consensus 237 ~~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~ 312 (444)
T 1g41_A 237 PEELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQ 312 (444)
T ss_dssp HHHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCS
T ss_pred HHHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccc
Confidence 345556666666332 69999999999865321 2222 2367778877763110 0135689999998
Q ss_pred --CCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHH--------HHHcc---CCCC---CccCHHHHHH-------hCC
Q 013281 338 --NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ--------IHTSR---MTLA---DDVNLEEFVM-------TKD 394 (446)
Q Consensus 338 --n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~--------~~~~~---~~~~---~~~~l~~la~-------~t~ 394 (446)
|.. .+.|.|+. ||+..+.|+.++.++..+|+. .+... .... .+..+..|+. ++.
T Consensus 313 ~~~~~-dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~ 389 (444)
T 1g41_A 313 VARPS-DLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 389 (444)
T ss_dssp SCCGG-GSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred cCChh-hcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCc
Confidence 444 45588877 999999999999999999983 11111 1111 2233555655 345
Q ss_pred CCcHHHHHHHHHHHHHHHHHh------CCCCccHHHHHHHHHHHH
Q 013281 395 EFSGADIKAICTEAGLLALRE------RRMKVTHTDFKKAKEKVM 433 (446)
Q Consensus 395 g~s~~di~~l~~~A~~~Al~~------~~~~It~~d~~~A~~~v~ 433 (446)
..-.+.|+.++..+...+..+ ..-.||.+++...+...+
T Consensus 390 ~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 390 NIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred cCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 555667666665554443333 123588888877665443
No 133
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.74 E-value=3.9e-05 Score=76.38 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=31.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEechh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSE 260 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------~~~~i~v~~s~ 260 (446)
|+.+..-+.|+||||+|||+|++.++... +...++++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 56667779999999999999999999876 13557776643
No 134
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.74 E-value=0.00036 Score=73.46 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=94.0
Q ss_pred cCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHH----HhCCcE---EEEechhh-----
Q 013281 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN----STSATF---LRVVGSEL----- 261 (446)
Q Consensus 194 ~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~----~~~~~~---i~v~~s~l----- 261 (446)
+|.+..+++|.+.+... +-...+.|.|+|+.|+|||+||+.+++ .....| +.++.+.-
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999988541 112345688999999999999999997 232222 22232221
Q ss_pred ---hhh---hcCC-------------chHHHHHHHHHHhhcC-CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHH
Q 013281 262 ---IQK---YLGD-------------GPKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ 321 (446)
Q Consensus 262 ---~~~---~~g~-------------~~~~v~~lf~~a~~~~-p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ 321 (446)
... .++. ....+...+...-... ..+|+||+++.. . .+ .+. .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~-----~~-~~~-~ 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------E-----TI-RWA-Q 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------H-----HH-HHH-H
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------h-----hh-ccc-c
Confidence 100 0111 0111222333332333 689999999765 1 11 121 1
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCc--cCHHHHHHhCCCCc
Q 013281 322 LDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD--VNLEEFVMTKDEFS 397 (446)
Q Consensus 322 ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~--~~l~~la~~t~g~s 397 (446)
. .+..||+||....... . . +.....+.++..+.++-.++|..+......... .....|+..+.|..
T Consensus 263 ~------~gs~ilvTTR~~~v~~-~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN-A-A--SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp H------TTCEEEEEESBGGGGG-G-C--CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred c------CCCEEEEEcCCHHHHH-H-c--CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 1 3567888887533211 1 1 113356899999999999999988533221011 12456777777743
No 135
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.72 E-value=0.0001 Score=68.67 Aligned_cols=71 Identities=17% Similarity=0.072 Sum_probs=42.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechh---h---hhhhcCCc-----hHHHHHHHHHHhh----cCCeE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE---L---IQKYLGDG-----PKLVRELFRVADD----LSPSI 287 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~---l---~~~~~g~~-----~~~v~~lf~~a~~----~~p~I 287 (446)
.-++++||+|+||||++..++..+ +..++.+.... . +....|.. .....+++..+.. ..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 347788999999999998887765 44555553221 0 01111110 0011345555544 24789
Q ss_pred EEEcCcccc
Q 013281 288 VFIDEIDAV 296 (446)
Q Consensus 288 L~IDEid~l 296 (446)
|+|||++.+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999887
No 136
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.71 E-value=5.1e-05 Score=74.36 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=64.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------------C----CcEEEEechhhh--h------hhcCC-----
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------------S----ATFLRVVGSELI--Q------KYLGD----- 268 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---------------~----~~~i~v~~s~l~--~------~~~g~----- 268 (446)
|+.+..-++|+||||+|||++|..+|... + ..+++++...-. . ...+.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 55666779999999999999999998752 2 466777654321 1 00111
Q ss_pred ----------chH----HHHHHHHHHhh-cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEE
Q 013281 269 ----------GPK----LVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKV 333 (446)
Q Consensus 269 ----------~~~----~v~~lf~~a~~-~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~v 333 (446)
... .+..+...... ..+.+|+||.+..+.....+.. +...+.+..+.+++..+..+....++.|
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 111 22233344444 5678999999999864322111 1111222334444444433333345666
Q ss_pred EEEe
Q 013281 334 ILAT 337 (446)
Q Consensus 334 I~at 337 (446)
|++.
T Consensus 253 i~~n 256 (322)
T 2i1q_A 253 LVTN 256 (322)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6654
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.70 E-value=0.00019 Score=66.59 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=29.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
|+.+...++|+||||+|||+++..++... +..+++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56667789999999999999998887642 455666554
No 138
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.70 E-value=3.7e-05 Score=68.03 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=32.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
+..|+|+|+||+||||++++++..++.+|+.++...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 35699999999999999999999999988887765543
No 139
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.58 E-value=0.0023 Score=59.39 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=82.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEech--------hhhhhhcC----------C--chHHHHHHHHHHhh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS--------ELIQKYLG----------D--GPKLVRELFRVADD 282 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s--------~l~~~~~g----------~--~~~~v~~lf~~a~~ 282 (446)
-.+++.|+||+|||+++-.+|..+ |..++.++.. .+...... . .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 359999999999999999888764 5555544442 22221100 0 1112233222
Q ss_pred cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC------------------CCCC
Q 013281 283 LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI------------------ESLD 344 (446)
Q Consensus 283 ~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~------------------~~ld 344 (446)
..|.+|+|||+-..... ........ +.+..++. ..+-|+.|+|.. +.++
T Consensus 83 ~~pdlvIVDElG~~~~~----~~r~~~~~-qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp 149 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAP----GSRHTKRW-QDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP 149 (228)
T ss_dssp HCCSEEEESCTTCBCCT----TCSSSBHH-HHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC
T ss_pred cCCCEEEEeCCCCCCcc----cchhHHHH-HHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCc
Confidence 36899999998764211 11112222 22333332 245577887732 3345
Q ss_pred hhhcCCCceeeEEEcCCCCHHHHHHHHHHHHccCCCCCccCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 013281 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 412 (446)
Q Consensus 345 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~~~~~~~~~~~~l~~la~~t~g~s~~di~~l~~~A~~~A 412 (446)
..++. +.+.+..+..|..+ +++..........+..-..+... |+...|.+|-.-|...+
T Consensus 150 d~~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~ 208 (228)
T 2r8r_A 150 DWVLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTA 208 (228)
T ss_dssp HHHHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred cHHHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHH
Confidence 55555 56666667766554 23333222222222222333333 56667776655444443
No 140
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.57 E-value=0.00028 Score=70.30 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=44.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEec-hhhh---------hhhcCCchHHHHHHHHHHhhcCCeEEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVG-SELI---------QKYLGDGPKLVRELFRVADDLSPSIVFI 290 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~----~~~i~v~~-s~l~---------~~~~g~~~~~v~~lf~~a~~~~p~IL~I 290 (446)
...++|.||+|+||||++++++.... ..++.+.- .++. +..++.........+..+-...|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 34589999999999999999988652 33332211 1110 1111211223445677777889999999
Q ss_pred cCcc
Q 013281 291 DEID 294 (446)
Q Consensus 291 DEid 294 (446)
||+-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9983
No 141
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.57 E-value=6.7e-05 Score=87.81 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=53.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh----hhhcCC--------chHHHHHHHHHHh----
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI----QKYLGD--------GPKLVRELFRVAD---- 281 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~----~~~~g~--------~~~~v~~lf~~a~---- 281 (446)
|+.+...++|+||||+|||+||..+|... +.++++++..... ....|. .+..+..++..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 47788889999999999999999998764 4467777765433 222221 1112234444443
Q ss_pred hcCCeEEEEcCcccccc
Q 013281 282 DLSPSIVFIDEIDAVGT 298 (446)
Q Consensus 282 ~~~p~IL~IDEid~l~~ 298 (446)
...|++|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 56899999999999864
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=6.9e-05 Score=67.98 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
.+...++|.|||||||||+++++|..++.+|+. ...+...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~--~d~~~~~ 62 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFID--LDWYIEE 62 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc--chHHHHH
Confidence 445679999999999999999999999988764 3444433
No 143
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.47 E-value=8.3e-05 Score=66.25 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhcC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~~g 267 (446)
++.++|+|+|||||||+++.+|..++.+|+.. ..+.....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~~g 45 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKRTG 45 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 45799999999999999999999999887643 444443333
No 144
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.46 E-value=0.00011 Score=70.30 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
|+....-++|+||||+|||+|+..++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4555677999999999999999999864
No 145
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.43 E-value=0.00013 Score=69.62 Aligned_cols=72 Identities=17% Similarity=0.361 Sum_probs=43.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEechhh---h--------hhhcCCchHHHHHHHHHHhhcCCeEE
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSEL---I--------QKYLGDGPKLVRELFRVADDLSPSIV 288 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~---~~i~v~~s~l---~--------~~~~g~~~~~v~~lf~~a~~~~p~IL 288 (446)
.+...++|.||+|+||||++++++..... --+.+....+ . +..++.....++..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 44556899999999999999999986421 1222222111 0 01111111233555666666689999
Q ss_pred EEcCcc
Q 013281 289 FIDEID 294 (446)
Q Consensus 289 ~IDEid 294 (446)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 146
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.42 E-value=0.00012 Score=65.37 Aligned_cols=33 Identities=36% Similarity=0.579 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
..+..|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345679999999999999999999999877654
No 147
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.42 E-value=0.00053 Score=64.67 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
..+..++|.|+||+||||+++.++..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 445679999999999999999999999876777777665
No 148
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.39 E-value=0.0018 Score=68.07 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=55.2
Q ss_pred eEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCChhhcCCCceeeEEEcCCCC
Q 013281 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE--SLDPALLRPGRIDRKIEFPLPD 363 (446)
Q Consensus 286 ~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~--~ld~al~r~gRf~~~i~~~~P~ 363 (446)
-+|+|||++.+.... ..++...+.++...- ..-+|.+|++|.++. .++..++. -|...|.|...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKA----RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHC----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHH----hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 489999999886321 234556666666543 245899999999987 78888876 777788899999
Q ss_pred HHHHHHHHH
Q 013281 364 IKTRRRIFQ 372 (446)
Q Consensus 364 ~~er~~Il~ 372 (446)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888887774
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.39 E-value=0.0001 Score=65.86 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=33.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
+..+..++|.||||+||||+++.++...+...+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4556679999999999999999999987777778876654
No 150
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.38 E-value=0.00047 Score=69.07 Aligned_cols=78 Identities=17% Similarity=0.319 Sum_probs=47.1
Q ss_pred hhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEech-hh---------hhhhcCCchHHHHHHHHHHhh
Q 013281 217 YEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGS-EL---------IQKYLGDGPKLVRELFRVADD 282 (446)
Q Consensus 217 ~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~----~~~i~v~~s-~l---------~~~~~g~~~~~v~~lf~~a~~ 282 (446)
+..+.+.+...++|.||+|+||||++++++.... ..++.+... ++ .+..+|.....+...+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3344445566799999999999999999998653 233232211 00 000111112233455566666
Q ss_pred cCCeEEEEcCcc
Q 013281 283 LSPSIVFIDEID 294 (446)
Q Consensus 283 ~~p~IL~IDEid 294 (446)
..|.+|++||+-
T Consensus 208 ~~pd~illdE~~ 219 (372)
T 2ewv_A 208 EDPDVIFVGEMR 219 (372)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEEECCCC
Confidence 789999999983
No 151
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.33 E-value=0.00087 Score=62.12 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS----TSATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~----~~~~~i~v~~ 258 (446)
|+.+..-++|+|+||+|||++|..+|.. .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5667778999999999999999877643 3556666654
No 152
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.28 E-value=0.00018 Score=62.87 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
.|+|.|+|||||||+++.++..++.+|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998876543
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.26 E-value=0.00023 Score=63.09 Aligned_cols=32 Identities=31% Similarity=0.592 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.+..|+|+|+||+||||+++.++..++..++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 34569999999999999999999999887754
No 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.26 E-value=0.00019 Score=63.00 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
..++|+|||||||||+++.++..++.+++ ++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~ 39 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEI 39 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHH
Confidence 46999999999999999999999987654 444443
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.26 E-value=0.0005 Score=70.69 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~ 258 (446)
|+.+..-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56777779999999999999999988743 446766654
No 156
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.00019 Score=63.47 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.++|.|+|||||||+++.+|..++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999987754
No 157
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.23 E-value=0.00023 Score=63.71 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-hCCcEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS-TSATFLR 255 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~-~~~~~i~ 255 (446)
+..++|+|+|||||||+++.++.. ++.+|+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 456999999999999999999998 6766543
No 158
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00036 Score=67.34 Aligned_cols=38 Identities=29% Similarity=0.537 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
.+..++|.||||+||||+|+.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45679999999999999999999988656677776444
No 159
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.18 E-value=0.00027 Score=61.91 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
..++|.|+|||||||+++.+|..++.+|+. ...+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id--~D~~~~~ 44 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD--TDMIISE 44 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 369999999999999999999999998864 3444433
No 160
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.18 E-value=0.00025 Score=63.12 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.|+|.|+|||||||+|+.++..++.+++. ...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~ 38 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIE 38 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHH
Confidence 48999999999999999999999988754 444433
No 161
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.17 E-value=0.00033 Score=63.41 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999875
No 162
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.15 E-value=0.0018 Score=67.43 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=51.8
Q ss_pred Ce-EEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCChhhcCCCceeeEEEcCC
Q 013281 285 PS-IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE--SLDPALLRPGRIDRKIEFPL 361 (446)
Q Consensus 285 p~-IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~--~ld~al~r~gRf~~~i~~~~ 361 (446)
|. +|+|||+..+.... ..+....+..+.... ..-++.+|++|.++. .++..++. -|...|.|..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998875211 123334444444332 234788999999976 57777766 7777888999
Q ss_pred CCHHHHHHHHHH
Q 013281 362 PDIKTRRRIFQI 373 (446)
Q Consensus 362 P~~~er~~Il~~ 373 (446)
.+..+.+.|+..
T Consensus 364 ~s~~dsr~ilg~ 375 (512)
T 2ius_A 364 SSKIDSRTILDQ 375 (512)
T ss_dssp SSHHHHHHHHSS
T ss_pred CCHHHHHHhcCC
Confidence 999888888753
No 163
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.11 E-value=0.00066 Score=71.96 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=41.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh----hhcCCchHHHHHHHHHH---------hhcCCeEEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----KYLGDGPKLVRELFRVA---------DDLSPSIVF 289 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~----~~~g~~~~~v~~lf~~a---------~~~~p~IL~ 289 (446)
..++|+||||||||+++.+++..+ +..++.+..+.-.. ...+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998754 45555443322111 11122222223332111 011347999
Q ss_pred EcCcccc
Q 013281 290 IDEIDAV 296 (446)
Q Consensus 290 IDEid~l 296 (446)
|||+..+
T Consensus 285 IDEasml 291 (574)
T 3e1s_A 285 VDEVSMM 291 (574)
T ss_dssp ECCGGGC
T ss_pred EcCccCC
Confidence 9999887
No 164
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.11 E-value=0.00043 Score=62.57 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
+..|+|.|+|||||||+|+.++..++.+++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 4469999999999999999999999887654
No 165
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.11 E-value=0.00038 Score=61.97 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
+..|+|.|+|||||||+|+.++..++.+++ +...+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 456899999999999999999999987654 444443
No 166
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.10 E-value=0.0004 Score=61.73 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
+..|+|.|+|||||||+++.++..++.+++ +...+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 42 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLLR 42 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHHH
Confidence 456999999999999999999999986654 4444433
No 167
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.10 E-value=0.00095 Score=63.22 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEechhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS---TSATFLRVVGSELI 262 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~---~~~~~i~v~~s~l~ 262 (446)
+.-|+|.|+||+||||+|+.++.. .+.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 346899999999999999999997 67787766665554
No 168
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.10 E-value=0.00042 Score=63.64 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
+..|+|.|+|||||||+++.+|..++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4569999999999999999999999876654
No 169
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.09 E-value=0.00039 Score=62.16 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
+..++|.|+|||||||+++.+++.++.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4569999999999999999999999877654
No 170
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.09 E-value=0.00031 Score=66.49 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.++|.|||||||||+|+++|..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988876654
No 171
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.08 E-value=0.00035 Score=62.12 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
..++|.|+|||||||+++.+++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 45899999999999999999999986554
No 172
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.07 E-value=0.00038 Score=60.57 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=24.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
-++|.|||||||||+|+.+ ..++.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 4889999999999999999 888887655
No 173
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.07 E-value=0.00037 Score=61.05 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.|+|.|+|||||||+++.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999987654
No 174
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.06 E-value=0.0003 Score=61.91 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH-HhCCcEEEEechh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVAN-STSATFLRVVGSE 260 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~-~~~~~~i~v~~s~ 260 (446)
|.-++|.|+||+||||+|+.++. ..+ +..++...
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDD 36 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHH
Confidence 34689999999999999999998 444 44444433
No 175
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.06 E-value=0.00032 Score=62.10 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=18.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKA 244 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Lara 244 (446)
..+.-+.|.||+|+|||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3455689999999999999994
No 176
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.05 E-value=0.0053 Score=62.67 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=48.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh----------h---------hc-CCchHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----------K---------YL-GDGPKLVRELFRVA 280 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~~----------~---------~~-g~~~~~v~~lf~~a 280 (446)
+|..+++.|++|+||||++..+|..+ +..+..+.+..+.. . .. ......+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36679999999999999999998765 45565555432100 0 11 12233445667777
Q ss_pred hhcCCeEEEEcCcccc
Q 013281 281 DDLSPSIVFIDEIDAV 296 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l 296 (446)
....+.+|+||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7767889999988554
No 177
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.05 E-value=0.00048 Score=62.33 Aligned_cols=31 Identities=26% Similarity=0.629 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
+..|+|.|+||+||||+|+.++..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4469999999999999999999999876654
No 178
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.04 E-value=0.00033 Score=62.00 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
+..|+|.|+|||||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999998876
No 179
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.04 E-value=0.0005 Score=63.65 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=32.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~~ 265 (446)
+.++.|+|.||||+||+|.|+.|++.++.+ .++..+++...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~~ 67 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRAE 67 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHHH
Confidence 456778999999999999999999999765 45556665443
No 180
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.03 E-value=0.0015 Score=60.92 Aligned_cols=33 Identities=33% Similarity=0.266 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s 259 (446)
.++++||+|+|||.++.+++...+..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999998887777666544
No 181
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.02 E-value=0.00046 Score=63.73 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.+..|+|.|+|||||||+++.++..++.+++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 34579999999999999999999999876654
No 182
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.02 E-value=0.00053 Score=62.11 Aligned_cols=36 Identities=33% Similarity=0.608 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
++..++|.||+|+||||+++.++..++..+ +++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 355699999999999999999999987544 445443
No 183
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.01 E-value=0.001 Score=68.23 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=30.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~ 258 (446)
|+.+..-++|.|+||+|||++|..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56777779999999999999999888643 456777655
No 184
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.00052 Score=60.42 Aligned_cols=35 Identities=37% Similarity=0.500 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
+..++|.||||+||||+++.++..++..++ ++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 446899999999999999999998876544 44443
No 185
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.99 E-value=0.00043 Score=61.49 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.-++|.|+|||||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 186
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.99 E-value=0.0003 Score=67.23 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||+++++...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455668999999999999999999743
No 187
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.98 E-value=0.00051 Score=61.53 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
+.-|+|.|+|||||||+|+.++..++.+++ +...+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 456999999999999999999999986554 444443
No 188
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.97 E-value=0.00079 Score=59.62 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l 261 (446)
+..+.|.|++||||||+++.++..+ +.+++.+++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4568899999999999999999987 888888876544
No 189
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.97 E-value=0.0029 Score=63.09 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=34.5
Q ss_pred HHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 278 RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 278 ~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
..|-...|.+|++||--.- -+...+..++++|..+.. ..++.||++|...+
T Consensus 175 ArAL~~~P~lLLlDEPTs~----------LD~~~~~~i~~lL~~l~~---~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSA----------LDPATTRSILELLKDINR---RLGLTILLITHEMD 225 (366)
T ss_dssp HHHTTTCCSEEEEESTTTT----------SCHHHHHHHHHHHHHHHH---HSCCEEEEEESCHH
T ss_pred HHHHhcCCCEEEEECCCcc----------CCHHHHHHHHHHHHHHHH---hCCCEEEEEecCHH
Confidence 3334457899999997443 266777888888877631 23567888887643
No 190
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.96 E-value=0.01 Score=57.66 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=45.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh-------hhh------------cC-CchHHHHHHHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI-------QKY------------LG-DGPKLVRELFRV 279 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~-------~~~------------~g-~~~~~v~~lf~~ 279 (446)
.++..++|.||+|+||||++..+|..+ +..+..+++.... ..| .+ .........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456678999999999999999999865 4455544442110 001 01 112222334555
Q ss_pred HhhcCCeEEEEcCccc
Q 013281 280 ADDLSPSIVFIDEIDA 295 (446)
Q Consensus 280 a~~~~p~IL~IDEid~ 295 (446)
+....+.+|+||+...
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5566788999998754
No 191
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.96 E-value=0.00069 Score=62.93 Aligned_cols=31 Identities=29% Similarity=0.406 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
+..|+|.|+|||||||+|+.+|+.++..++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3469999999999999999999999976654
No 192
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.96 E-value=0.0038 Score=56.64 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=65.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE---ech------hhhhhh-----------cCCc------hHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANST---SATFLRV---VGS------ELIQKY-----------LGDG------PKLVRELF 277 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~---~~~~i~v---~~s------~l~~~~-----------~g~~------~~~v~~lf 277 (446)
.|++|+++|.||||+|-.+|-.. |..+..+ .+. .++... .-.. .......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 59999999999999999988654 5555555 221 223222 0001 12334444
Q ss_pred HHHhh----cCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhhcCCCce
Q 013281 278 RVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRI 353 (446)
Q Consensus 278 ~~a~~----~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf 353 (446)
..+.. ....+|+|||+.....-..- + ...++++|.. ...+.-||+|+|.+ ++.|+. .-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-----~---~~ev~~~l~~-----Rp~~~~vIlTGr~a---p~~l~e--~A 171 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-----P---LEEVISALNA-----RPGHQTVIITGRGC---HRDILD--LA 171 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-----C---HHHHHHHHHT-----SCTTCEEEEECSSC---CHHHHH--HC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-----C---HHHHHHHHHh-----CcCCCEEEEECCCC---cHHHHH--hC
Confidence 44443 34689999999553211100 1 1335566652 23567899999864 456655 55
Q ss_pred eeEEEc
Q 013281 354 DRKIEF 359 (446)
Q Consensus 354 ~~~i~~ 359 (446)
|.+-++
T Consensus 172 D~VTem 177 (196)
T 1g5t_A 172 DTVSEL 177 (196)
T ss_dssp SEEEEC
T ss_pred cceeee
Confidence 544444
No 193
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.95 E-value=0.00057 Score=59.63 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.|+|.|+|||||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999987654
No 194
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.94 E-value=0.00057 Score=62.45 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
.|+|.|||||||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999998766543
No 195
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.94 E-value=0.00069 Score=63.54 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.+..|+|.||||+||||+|+.+++.++.+++ +..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r 65 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLR 65 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHH
Confidence 4667999999999999999999999876654 4444443
No 196
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.93 E-value=0.0006 Score=62.22 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.|+|.|||||||||+|+.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 37899999999999999999999877654
No 197
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.92 E-value=0.0009 Score=60.54 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l 261 (446)
++..+.|.||+|+||||++++++..+ +...+.+++..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 45668899999999999999999987 544446665544
No 198
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.92 E-value=0.0005 Score=63.19 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
+..|+|.||||+||||+++.+|..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4569999999999999999999999875543
No 199
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.91 E-value=0.0038 Score=56.62 Aligned_cols=69 Identities=17% Similarity=0.094 Sum_probs=41.2
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHHh--CCcEEEEechhhhhhhcCCchHH------------HHHHHHHHhhcCCeEEE
Q 013281 225 PKGVILYGEPGTGKT-LLAKAVANST--SATFLRVVGSELIQKYLGDGPKL------------VRELFRVADDLSPSIVF 289 (446)
Q Consensus 225 ~~~vLL~GppGtGKT-~Laraia~~~--~~~~i~v~~s~l~~~~~g~~~~~------------v~~lf~~a~~~~p~IL~ 289 (446)
.+-.++|||.|+||| .|.+++.+.. +..++.+... +-..|....... ..+++...+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEE
Confidence 345788999999999 8999988754 4566666533 111111000000 112233222 347999
Q ss_pred EcCcccc
Q 013281 290 IDEIDAV 296 (446)
Q Consensus 290 IDEid~l 296 (446)
|||++-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999988
No 200
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.91 E-value=0.00061 Score=62.57 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
..|+|.|+|||||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999998776543
No 201
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.90 E-value=0.00077 Score=60.85 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
+..|+|.|+|||||||+++.+++.++.+++. ...+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~--~d~~~~ 51 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS--AGDLLR 51 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE--HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe--HHHHHH
Confidence 4568999999999999999999999875544 444433
No 202
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.90 E-value=0.0023 Score=62.41 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
|+.+..-++|.|+||+|||++|..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56777789999999999999999998654 346666654
No 203
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.90 E-value=0.00069 Score=63.40 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
+..++|.||||+||||+++.+++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 567999999999999999999999887543
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.89 E-value=0.0051 Score=62.73 Aligned_cols=195 Identities=17% Similarity=0.145 Sum_probs=95.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh----------hhhc---------C-CchHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI----------QKYL---------G-DGPKLVRELFRVA 280 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l~----------~~~~---------g-~~~~~v~~lf~~a 280 (446)
++..++|.||+|+||||++..+|..+ +..+..+.+.... .... + .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678899999999999999998755 5555555543110 0111 1 1122234455566
Q ss_pred hhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC-CCCh--hhcCCCceeeEE
Q 013281 281 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE-SLDP--ALLRPGRIDRKI 357 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~-~ld~--al~r~gRf~~~i 357 (446)
....+.+|+||....+.. ..+......+..++..+. ...+++++.+.... .++- .+.....+ ..+
T Consensus 176 ~~~~~DvvIIDTaGr~~~-------~~d~~lm~el~~i~~~~~----pd~vlLVlDa~~gq~a~~~a~~f~~~~~~-~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGY-------GEETKLLEEMKEMYDVLK----PDDVILVIDASIGQKAYDLASRFHQASPI-GSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSS-------CCTTHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGGHHHHHHHHHHCSS-EEE
T ss_pred HhcCCCEEEEECCCCccc-------cCCHHHHHHHHHHHHhhC----CcceEEEEeCccchHHHHHHHHHhcccCC-cEE
Confidence 656789999998865420 012233344444444432 23455555443221 1110 11100011 123
Q ss_pred EcCCCCH----HHHHHHHHHHHccCC---------CC--CccCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh-------
Q 013281 358 EFPLPDI----KTRRRIFQIHTSRMT---------LA--DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE------- 415 (446)
Q Consensus 358 ~~~~P~~----~er~~Il~~~~~~~~---------~~--~~~~l~~la~~t~g~s~~di~~l~~~A~~~Al~~------- 415 (446)
-+.-.|. .....+.... ..+ +. ...+.+.++...-|+ +|+..++..|......+
T Consensus 244 IlTKlD~~a~~G~als~~~~~--g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~ 319 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVAT--GATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKKME 319 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHH--TCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC-----------
T ss_pred EEecccccccchHHHHHHHHH--CCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333332 2222333321 111 11 123456677665443 47888876664322111
Q ss_pred --CCC--CccHHHHHHHHHHHHh
Q 013281 416 --RRM--KVTHTDFKKAKEKVMF 434 (446)
Q Consensus 416 --~~~--~It~~d~~~A~~~v~~ 434 (446)
... ..|.+||...++++..
T Consensus 320 k~~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 320 DVMEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp --------CCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHh
Confidence 122 6899999998887753
No 205
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.85 E-value=0.00073 Score=60.02 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL 261 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l 261 (446)
-|+|.|+|||||||+++.+++.++ ..+..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 488999999999999999999876 23555554443
No 206
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.85 E-value=0.0025 Score=63.88 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+....-+.|.||+|||||||.+.|+...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3445568899999999999999999854
No 207
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.84 E-value=0.0028 Score=60.58 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...+.|.||+|+|||||++.|+...
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34556679999999999999999999754
No 208
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.81 E-value=0.0038 Score=65.25 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=65.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh----hhh--hcC----------------------Cc
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL----IQK--YLG----------------------DG 269 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l----~~~--~~g----------------------~~ 269 (446)
++.+...++|.||||+|||+|++.++... +...+++...+- ... ..+ ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 55667779999999999999999998754 334555543221 100 000 12
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 270 ~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
....+.++..+....|.+|+||=+..+... .. ..+....+..++..+.. .++.+|+++...
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~-----~~-~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG-----VS-NNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS-----SC-HHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh-----CC-hHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 234455666677778999999965555221 11 12355566666665532 245666666543
No 209
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.81 E-value=0.00087 Score=61.48 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.++|.||||+||+|.|+.||+.++.+. ++..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 378899999999999999999998765 45555543
No 210
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.81 E-value=0.0033 Score=65.75 Aligned_cols=113 Identities=20% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHH--HHHh--CCcEEEEechhhhh------hhcCCc----------------------
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAV--ANST--SATFLRVVGSELIQ------KYLGDG---------------------- 269 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Larai--a~~~--~~~~i~v~~s~l~~------~~~g~~---------------------- 269 (446)
+.+...++|.||+|+|||||++.+ +... +...+++++.+... ..+|-.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 455677999999999999999994 4432 34455555432100 001100
Q ss_pred --------hHHHHHHHHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 270 --------PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 270 --------~~~v~~lf~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
...............|.+|+|||+-.+.+. .+.+......+..++..+.. .++.||++|...+
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~ 186 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIE 186 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCC
Confidence 112223333444457889999999776422 22244566677777776632 2566788887665
Q ss_pred CC
Q 013281 342 SL 343 (446)
Q Consensus 342 ~l 343 (446)
.+
T Consensus 187 ~~ 188 (525)
T 1tf7_A 187 EY 188 (525)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 211
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.80 E-value=0.0027 Score=70.63 Aligned_cols=106 Identities=17% Similarity=0.099 Sum_probs=54.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH-----hCCc--------------EEEEechhhhhhhcCCchHHHHHHHHHHh-hc
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANS-----TSAT--------------FLRVVGSELIQKYLGDGPKLVRELFRVAD-DL 283 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~-----~~~~--------------~i~v~~s~l~~~~~g~~~~~v~~lf~~a~-~~ 283 (446)
....++|+||.|+||||+.+.++.- .+.. |-.+...+......+.......++...+. ..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 3456899999999999999998742 2211 11111122222222222222333333332 35
Q ss_pred CCeEEEEcCcccccccccCCCCCCcHHHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCC
Q 013281 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIES 342 (446)
Q Consensus 284 ~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~-~lL~~ld~~~~~~~v~vI~atn~~~~ 342 (446)
.|++|++||...= -+......+. .++..+.. ..+..+|++|+..+.
T Consensus 752 ~p~LlLLDEP~~G----------lD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el 798 (918)
T 3thx_B 752 SQSLVILDELGRG----------TSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPV 798 (918)
T ss_dssp TTCEEEEESTTTT----------SCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGG
T ss_pred CCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHH
Confidence 7899999998432 2332233332 55554421 235678899987553
No 212
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.79 E-value=0.0025 Score=62.69 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=47.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhhh-----h---hcCCchHHHHHHHHHHhhcCCeEEEEcCc
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQ-----K---YLGDGPKLVRELFRVADDLSPSIVFIDEI 293 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~l~~-----~---~~g~~~~~v~~lf~~a~~~~p~IL~IDEi 293 (446)
+...++|.||+|+|||||+++++..... ..+.+.+..... . ++.......+..+..|....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 3557999999999999999999987642 344444332110 0 12001223455666777788999999998
Q ss_pred c
Q 013281 294 D 294 (446)
Q Consensus 294 d 294 (446)
.
T Consensus 250 ~ 250 (330)
T 2pt7_A 250 R 250 (330)
T ss_dssp C
T ss_pred C
Confidence 4
No 213
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.76 E-value=0.00093 Score=59.94 Aligned_cols=29 Identities=14% Similarity=0.485 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.++|.|++||||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987654
No 214
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.75 E-value=0.001 Score=65.16 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
+..++|+||+|||||+|++.+|+.++..++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3469999999999999999999999988877754
No 215
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.74 E-value=0.0012 Score=58.63 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 013281 227 GVILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~---~~~~i~v~ 257 (446)
-+.|.|+|||||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 78877654
No 216
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.74 E-value=0.0012 Score=60.56 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
..+.|.||+||||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999876643
No 217
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.73 E-value=0.001 Score=60.83 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
.++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 488999999999999999999998766543
No 218
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.70 E-value=0.0019 Score=58.43 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
.+.|.||+||||||+++.++. ++.+++ +...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 578999999999999999998 777664 444443
No 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.70 E-value=0.0039 Score=69.87 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=35.8
Q ss_pred cCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 194 ~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
+|.+..+.+|.+.+... ...+-|.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999999987641 12456899999999999999999863
No 220
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.69 E-value=0.0031 Score=65.58 Aligned_cols=38 Identities=8% Similarity=0.005 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~ 258 (446)
|+.+..-++|.|+||+|||++|..+|... +.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 56777779999999999999999998754 446777665
No 221
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.68 E-value=0.00084 Score=63.48 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
...+.|.|++|+||||+++.+|..++.+|+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 4569999999999999999999999987765
No 222
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.67 E-value=0.0015 Score=58.78 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEe
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST-SATFLRVV 257 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~-~~~~i~v~ 257 (446)
+.-|.|.|++||||||+++.+++.+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 46676654
No 223
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.66 E-value=0.0026 Score=57.30 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=27.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
.|.|.|++||||||+++.++. ++.+++. ...+...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHHH
Confidence 488999999999999999999 8766544 4444443
No 224
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.66 E-value=0.0013 Score=60.73 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
.++|.|+|||||||+++.++..++.++ ++..+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHH
Confidence 378999999999999999999998654 4444443
No 225
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.65 E-value=0.006 Score=55.13 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=40.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh-------hhhhcCCc-----hHHHHHHHHHHhhcCCeEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL-------IQKYLGDG-----PKLVRELFRVADDLSPSIVF 289 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l-------~~~~~g~~-----~~~v~~lf~~a~~~~p~IL~ 289 (446)
..-.+++||+|+|||+.+-.++... +..++.+....- +....|.. .....++++.+.. ...+|+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 3457889999999999888887765 444444421100 00011100 0001245554432 357999
Q ss_pred EcCcccc
Q 013281 290 IDEIDAV 296 (446)
Q Consensus 290 IDEid~l 296 (446)
|||++.+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999887
No 226
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.64 E-value=0.0011 Score=65.85 Aligned_cols=53 Identities=17% Similarity=0.306 Sum_probs=37.5
Q ss_pred cCcHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 194 ~Gl~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
+.++...+.+.+.+...+.. | ...+++|+|+||+|||++++++|..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 34556666666666543221 1 12369999999999999999999998877744
No 227
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.63 E-value=0.0044 Score=67.94 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=37.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcCCCC--chhhhhhCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTH--PELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 183 ~~~~~~~~~di~Gl~~~i~~l~e~i~~pl~~--~~~~~~~g~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
...+..+|.++.-.+...+.+.+.-..|... ..+... +.....+++.||+|+|||+++..++..
T Consensus 67 ~~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 67 EDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445567777754444555555544444221 111111 123456999999999999977776543
No 228
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.63 E-value=0.0017 Score=58.02 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 013281 228 VILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~---~~~~i~v~ 257 (446)
|.|.|++||||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88877553
No 229
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.60 E-value=0.0051 Score=61.19 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+....-+.|.||+|||||||.+.|+...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3455568899999999999999999854
No 230
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.56 E-value=0.0045 Score=61.50 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+....-+.|.||+|||||||.+.|+...
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445568899999999999999999754
No 231
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.55 E-value=0.0019 Score=60.33 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
+..+.|.||||+||||+++.++..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4569999999999999999999999876643
No 232
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.53 E-value=0.0016 Score=58.72 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSAT 252 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~ 252 (446)
+.-|+|.|+|||||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468999999999999999999998763
No 233
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.53 E-value=0.0017 Score=58.57 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
.+.|.|++||||||+++.++..++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 58899999999999999999999977764
No 234
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.49 E-value=0.012 Score=60.31 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=30.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
|+.+..-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56777779999999999999999888754 556776654
No 235
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.47 E-value=0.002 Score=57.78 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
+..|.|.|++||||||+++.+++. +.+++ +...+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~ 42 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALA 42 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHH
Confidence 456899999999999999999998 66654 455444
No 236
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.47 E-value=0.0086 Score=58.24 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...+.|.||+|+|||||++.++...
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34556679999999999999999999854
No 237
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.46 E-value=0.00094 Score=60.57 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSA 251 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~ 251 (446)
.+.-|+|.|+|||||||+++.++..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3556999999999999999999997643
No 238
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.46 E-value=0.00086 Score=60.73 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSAT 252 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~ 252 (446)
+.-|+|.|+|||||||+++.+++.++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4569999999999999999999987543
No 239
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.43 E-value=0.0019 Score=58.09 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.++.-+.|.||+|+||||+++.++...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678999999999999999999876
No 240
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.41 E-value=0.002 Score=58.39 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
..+.-++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999999875
No 241
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.40 E-value=0.0022 Score=58.01 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.+.|+|++||||||+++.++..++.+++ ++..+..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~ 48 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGH 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHH
Confidence 4889999999999999999999887765 4444443
No 242
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.40 E-value=0.02 Score=56.34 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
|+.+..-++|.|+||+|||++|..+|... +.++++++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56677779999999999999999998753 556666544
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.38 E-value=0.004 Score=55.34 Aligned_cols=38 Identities=29% Similarity=0.247 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL 261 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l 261 (446)
.+..++|.|+||+||||+++.++..++ ..+..+++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 455688999999999999999998764 34555555443
No 244
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.38 E-value=0.0027 Score=59.74 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
...+.|.||+||||||+++.++..++..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 346889999999999999999999987654
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0023 Score=56.85 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
..-+.|.||+|+|||||++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999998764
No 246
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.37 E-value=0.0035 Score=58.82 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=30.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc--------EEEEechhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSAT--------FLRVVGSELI 262 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~--------~i~v~~s~l~ 262 (446)
+..|.|.|++||||||+|+.++..++.+ ++.++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4568999999999999999999998876 3356666554
No 247
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0088 Score=54.00 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
.+.-+.|.|++|+||||+++.++..+ +..++.++.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 34568899999999999999999875 455555433
No 248
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.35 E-value=0.0072 Score=67.37 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~ 247 (446)
.-++|+||+|+||||+.+.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999853
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.34 E-value=0.0029 Score=57.62 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEechhh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGSEL 261 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~----~~~i~v~~s~l 261 (446)
..+..++|.|++|+||||+++.++..++ .+++.+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3455688999999999999999998764 45777775544
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.32 E-value=0.0042 Score=56.47 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.+.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455688999999999999999999774
No 251
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.26 E-value=0.0034 Score=57.27 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
+..|.|.|++||||||+++.++. ++.+++ +...+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~i--d~D~~~ 38 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVI--DADIIA 38 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEE--EccHHH
Confidence 44689999999999999999998 776554 444443
No 252
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.24 E-value=0.0022 Score=58.07 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCcE
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST-SATF 253 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~-~~~~ 253 (446)
++.-+.|.|++|+||||+++.++..+ +..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 34568899999999999999999976 4433
No 253
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.24 E-value=0.013 Score=62.48 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.++++|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999988776543
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.23 E-value=0.0038 Score=57.92 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
..+..+.|.|++||||||+++.++..++.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 345568999999999999999999999976643
No 255
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.23 E-value=0.003 Score=61.48 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
+.-++|.||+|+|||+||..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999877666543
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.22 E-value=0.0022 Score=63.21 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s 259 (446)
++.++|.||+|||||+|+..+|+.++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999998877665543
No 257
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.22 E-value=0.021 Score=61.21 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHhhcCCCCchhhhhhCCCCCceEEEEcCCCCcHHHHHHHH-HHHh--CCcEEEEech
Q 013281 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV-ANST--SATFLRVVGS 259 (446)
Q Consensus 196 l~~~i~~l~e~i~~pl~~~~~~~~~g~~~~~~vLL~GppGtGKT~Larai-a~~~--~~~~i~v~~s 259 (446)
.++|++.+..++.. ..-.||+||||||||+++-.+ +... +..++.+..+
T Consensus 191 N~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 56677777776653 124789999999999755444 3322 4455554443
No 258
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.21 E-value=0.0031 Score=56.70 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
++.-+.|.||+|+|||||++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999863
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.21 E-value=0.012 Score=59.68 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
..++|.||+|+||||++++++....
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4588999999999999999999875
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.20 E-value=0.0029 Score=57.60 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
++.-+.|.||+|+||||+++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999874
No 261
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.19 E-value=0.021 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
+.+++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999877764
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.19 E-value=0.0035 Score=55.76 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l 261 (446)
.++|.||+|+||||+++.++...+. .+.+++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 245555544
No 263
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.17 E-value=0.0037 Score=56.99 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
..+.|.|++|||||++++.++..++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 458999999999999999999999877654
No 264
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.15 E-value=0.0039 Score=54.58 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...+.|.||.|+|||||+++++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34455668999999999999999999987
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.15 E-value=0.039 Score=53.21 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~ 258 (446)
.+..++|.||+|+||||++..+|..+ |..+..+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45679999999999999999998754 445555554
No 266
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.14 E-value=0.0063 Score=63.46 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=45.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechh-hhhh-----------hcCCchHHHHHHHHHHhhcCCeEEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSE-LIQK-----------YLGDGPKLVRELFRVADDLSPSIVFI 290 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s~-l~~~-----------~~g~~~~~v~~lf~~a~~~~p~IL~I 290 (446)
+.+++|.||+|+||||++++++..... ..+.+.... +... .++...-.+..++..+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 557999999999999999999987643 344544332 1100 00111112345555666678999999
Q ss_pred cCcc
Q 013281 291 DEID 294 (446)
Q Consensus 291 DEid 294 (446)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9973
No 267
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.11 E-value=0.028 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=18.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVA 246 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia 246 (446)
...+++.||+|||||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999998776554
No 268
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.09 E-value=0.023 Score=50.81 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=17.5
Q ss_pred ceEEEEcCCCCcHHHHHH-HHHHH
Q 013281 226 KGVILYGEPGTGKTLLAK-AVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Lar-aia~~ 248 (446)
+.+++.+|+|+|||+.+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 569999999999998744 34443
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.09 E-value=0.0033 Score=56.97 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
++..+.|.||+|+|||||++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999876
No 270
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.07 E-value=0.0036 Score=60.10 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEechhh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSEL 261 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~-~~~~i~v~~s~l 261 (446)
.-++|.|+||+||||+++.++... +. ..++...+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~~ 37 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDY 37 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccHH
Confidence 458999999999999999999864 44 44444443
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.04 E-value=0.005 Score=55.45 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATF 253 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~ 253 (446)
.|+|.||+|+|||||++.+.......|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 489999999999999999998765433
No 272
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.99 E-value=0.02 Score=59.81 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQ 263 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~~ 263 (446)
+.-|+|+|.||+||||+|+.+++.++ .....++..++..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 44688999999999999999999874 4455566555443
No 273
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.97 E-value=0.026 Score=61.96 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
...++|+||+|+||||+.+.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 346889999999999999999863
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.97 E-value=0.0039 Score=56.39 Aligned_cols=26 Identities=38% Similarity=0.627 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
++.+.|.||+|+|||||++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45699999999999999999998764
No 275
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.96 E-value=0.02 Score=52.66 Aligned_cols=31 Identities=13% Similarity=-0.011 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 013281 227 GVILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~---~~~~i~v~ 257 (446)
-.+++||.|+|||+.+-.++... +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999888777644 44555443
No 276
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.96 E-value=0.0055 Score=58.70 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~ 262 (446)
+..|.|.|++||||||+|+.++ .++.++ +++..+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHH
Confidence 4468999999999999999999 577655 4555543
No 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.95 E-value=0.055 Score=55.90 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+..+..++|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3455668899999999999999999865
No 278
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.95 E-value=0.004 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
+.+.|.||+|+|||||++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 279
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.95 E-value=0.0046 Score=60.26 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
.-++|.||+|+|||+|+..+|..++..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 357899999999999999999998766655443
No 280
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.93 E-value=0.032 Score=55.93 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=30.9
Q ss_pred hcCC--eEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 282 DLSP--SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 282 ~~~p--~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
...| .||+|||.+.=. +......+.++|..+. .+..||++|..+
T Consensus 311 ~~~~~~~~LlLDEpt~~L----------D~~~~~~l~~~L~~l~-----~~~~vi~itH~~ 356 (415)
T 4aby_A 311 VLGADTPSVVFDEVDAGI----------GGAAAIAVAEQLSRLA-----DTRQVLVVTHLA 356 (415)
T ss_dssp HHCCSSSEEEESSTTTTC----------CHHHHHHHHHHHHHHT-----TTSEEEEECSCH
T ss_pred HhCCCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHh-----CCCEEEEEeCcH
Confidence 3467 899999986543 6667788888888763 145677777654
No 281
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.92 E-value=0.0071 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.++-+.|.||+|+|||||+++++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455689999999999999999998765
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.91 E-value=0.0042 Score=57.07 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.++.-+.|.||+|+|||||++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445569999999999999999999976
No 283
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.89 E-value=0.017 Score=60.00 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
.+..|+|+|+||+||||++..+|..+ +..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999999765 556666655
No 284
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.88 E-value=0.0043 Score=61.22 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~ 257 (446)
.-|+|.||+|+|||+||+.+|..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999986555443
No 285
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.88 E-value=0.0038 Score=63.37 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
.+.-|+|+|+||+||||+|+.++..++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 3556889999999999999999998876543
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.81 E-value=0.0058 Score=55.46 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.+...+.|.||+|+|||||+++++....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4456688999999999999999999874
No 287
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.80 E-value=0.062 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=17.5
Q ss_pred CceEEEEcCCCCcHHHHH-HHHHH
Q 013281 225 PKGVILYGEPGTGKTLLA-KAVAN 247 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~La-raia~ 247 (446)
.+.+++.+|+|+|||..+ -.+..
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999873 33443
No 288
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.80 E-value=0.036 Score=58.80 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+...+.|.||+|+|||||++.++...
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34566679999999999999999999854
No 289
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.019 Score=61.03 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+..-+.|.||+|+|||||.+.++...
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345568999999999999999999743
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.78 E-value=0.0065 Score=59.04 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=26.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.+.+...+.|+||+|+|||||++.|+....
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 456677799999999999999999999873
No 291
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.76 E-value=0.0066 Score=55.17 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFL 254 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i 254 (446)
.|.|.|++|||||++++.+|..++.+|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 5889999999999999999999999987
No 292
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.74 E-value=0.0065 Score=56.70 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSAT 252 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~ 252 (446)
..+.-+.|.||+|+|||||++.++..++..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344558899999999999999999987643
No 293
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.73 E-value=0.013 Score=61.55 Aligned_cols=49 Identities=10% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHhhcCCeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 013281 277 FRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (446)
Q Consensus 277 f~~a~~~~p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~ 340 (446)
+..|-...|.+|++||--+-. +......+.++|..+.. +..||++|.+.
T Consensus 149 iA~aL~~~p~illlDEPts~L----------D~~~~~~l~~~l~~l~~-----g~tii~vsHdl 197 (538)
T 3ozx_A 149 VAASLLREADVYIFDQPSSYL----------DVRERMNMAKAIRELLK-----NKYVIVVDHDL 197 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTC----------CHHHHHHHHHHHHHHCT-----TSEEEEECSCH
T ss_pred HHHHHHcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHhC-----CCEEEEEEeCh
Confidence 334445578999999975432 55667778888887631 35677777654
No 294
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.72 E-value=0.0061 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.++++|.||+|+|||+||..++....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 56799999999999999999998765
No 295
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.71 E-value=0.019 Score=60.73 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
+.+...+.|.||+|+|||||++.++....
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 44556699999999999999999998553
No 296
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.69 E-value=0.0067 Score=55.86 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=16.6
Q ss_pred eEEEEcCCCCcHHH-HHHHHHH
Q 013281 227 GVILYGEPGTGKTL-LAKAVAN 247 (446)
Q Consensus 227 ~vLL~GppGtGKT~-Laraia~ 247 (446)
-.+++||.|+|||+ |.+.+.+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r 51 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRR 51 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999 6566544
No 297
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.68 E-value=0.04 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999999865
No 298
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.65 E-value=0.0068 Score=58.13 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEe
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVV 257 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~ 257 (446)
++.+..-++|.||||+|||+|++.++... +.+++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56667789999999999999999998754 33455543
No 299
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.65 E-value=0.0087 Score=58.05 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.++..+.|.||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999999865
No 300
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.64 E-value=0.035 Score=60.60 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
...++|+||+|+||||+.+.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 446889999999999999999863
No 301
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.63 E-value=0.037 Score=58.52 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455669999999999999999999754
No 302
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.62 E-value=0.0066 Score=61.16 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~i~v 256 (446)
+.-++|.||+|+|||+|+..+|..++..++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 34588999999999999999999988766544
No 303
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.57 E-value=0.16 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
+.+++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 56999999999999877655543
No 304
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.57 E-value=0.036 Score=58.67 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
+.+...+.|.||+|+|||||++.++....
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 44566699999999999999999998553
No 305
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.53 E-value=0.021 Score=58.21 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
.+..++|+|++|+||||++..+|..+ +..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34679999999999999999999865 345555554
No 306
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.50 E-value=0.038 Score=53.33 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=45.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh----h------hhh---------cCCc-hHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL----I------QKY---------LGDG-PKLVRELFRVAD 281 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l----~------~~~---------~g~~-~~~v~~lf~~a~ 281 (446)
+..+++.|++|+||||++..+|..+ +..+..+++.-. . ... .+.. ...+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5668889999999999999999765 455555554311 0 000 0111 223345566665
Q ss_pred hcCCeEEEEcCcccc
Q 013281 282 DLSPSIVFIDEIDAV 296 (446)
Q Consensus 282 ~~~p~IL~IDEid~l 296 (446)
.....+|+||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 456689999986544
No 307
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.49 E-value=0.01 Score=58.98 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.++..+.|.||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4456679999999999999999999865
No 308
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.44 E-value=0.012 Score=62.78 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l 261 (446)
+..|+|.|.||+||||+|++++..+ +.+++.+++..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4568999999999999999999998 889988875544
No 309
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.41 E-value=0.016 Score=67.14 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
++...+.|+||+|+|||||++.+.+...
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4555699999999999999999998764
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.40 E-value=0.0048 Score=56.90 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=17.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHH-HHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVA-NST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia-~~~ 249 (446)
.++.-+.|.||+|+|||||++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345568899999999999999999 765
No 311
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.38 E-value=0.01 Score=54.71 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
....-+.|.||+|+|||||+++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3455688999999999999999998764
No 312
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.35 E-value=0.02 Score=55.07 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
..+.-|.|.||+|+|||||++.++..+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455688999999999999999998775
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.33 E-value=0.0047 Score=55.83 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSA 251 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~ 251 (446)
-|.|.|++|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999998753
No 314
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.30 E-value=0.13 Score=49.64 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=19.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
.+.+++.+|+|+|||+.+-..+-.
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHH
Confidence 357999999999999987655443
No 315
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.29 E-value=0.043 Score=50.35 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=16.0
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAK 243 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Lar 243 (446)
.+.+++.+|+|+|||+.+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 4579999999999998644
No 316
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.28 E-value=0.072 Score=48.53 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=16.0
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAK 243 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Lar 243 (446)
.+.+++.+|+|+|||+.+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4579999999999998654
No 317
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.24 E-value=0.013 Score=54.45 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~ 263 (446)
.+-|.||||+||||+|+.++..++.+++ +..+++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 4778999999999999999999987765 4444443
No 318
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.24 E-value=0.035 Score=56.57 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEechhhhh----------hh-----cC----Cc-hHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELIQ----------KY-----LG----DG-PKLVRELFRV 279 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~s~l~~----------~~-----~g----~~-~~~v~~lf~~ 279 (446)
+++.++++|++|+||||++-.+|..+ +..+..+++..... .. +. .. ...+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 46678899999999999999998754 66677666642110 00 00 11 2233556666
Q ss_pred HhhcCCeEEEEcCcccc
Q 013281 280 ADDLSPSIVFIDEIDAV 296 (446)
Q Consensus 280 a~~~~p~IL~IDEid~l 296 (446)
+......+|+||=...+
T Consensus 179 ~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHTTCSEEEEECCCCC
T ss_pred HHhCCCCEEEEECCCcc
Confidence 65445689999976443
No 319
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.23 E-value=0.081 Score=49.11 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=16.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~ 247 (446)
.-.++|||.|+|||+.+-..+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~ 41 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVR 41 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3477899999999966655544
No 320
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.23 E-value=0.014 Score=54.14 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEE
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS--ATFLR 255 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~--~~~i~ 255 (446)
.+.-+.|.||||+||||+++.++..++ ..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 344588999999999999999999886 34443
No 321
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.22 E-value=0.077 Score=48.85 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=15.9
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAK 243 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Lar 243 (446)
.+.+++.+|+|+|||+.+-
T Consensus 67 ~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp TCCEEECCCSSHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3569999999999998744
No 322
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.13 E-value=0.011 Score=58.70 Aligned_cols=73 Identities=22% Similarity=0.409 Sum_probs=45.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEech-hhhh-------hhcC-C-------chHHHHHHHHHHhhc
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGS-ELIQ-------KYLG-D-------GPKLVRELFRVADDL 283 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~~--~~i~v~~s-~l~~-------~~~g-~-------~~~~v~~lf~~a~~~ 283 (446)
+.+...++|.||+|+|||||+++++..... ..+.+... ++.. .++. . ....++..+..+...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 344667999999999999999999987642 33444321 1100 0111 0 111245666667677
Q ss_pred CCeEEEEcCcc
Q 013281 284 SPSIVFIDEID 294 (446)
Q Consensus 284 ~p~IL~IDEid 294 (446)
.|..++++|+.
T Consensus 252 ~pd~~l~~e~r 262 (361)
T 2gza_A 252 KPTRILLAELR 262 (361)
T ss_dssp CCSEEEESCCC
T ss_pred CCCEEEEcCch
Confidence 88999999974
No 323
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.11 E-value=0.0081 Score=56.03 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4455669999999999999999999754
No 324
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.04 E-value=0.029 Score=58.78 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.....+.|.||+|+|||||+++++...
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999854
No 325
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.04 E-value=0.015 Score=53.72 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~ 255 (446)
..|.|.|++|||||++++.+|..++.+|+-
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358899999999999999999999998854
No 326
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.02 E-value=0.085 Score=59.41 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVA 246 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia 246 (446)
...++|+||+|+||||+.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568999999999999999984
No 327
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.99 E-value=0.0092 Score=55.71 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999999854
No 328
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.96 E-value=0.014 Score=52.14 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 013281 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (446)
Q Consensus 228 vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~ 260 (446)
+|++|++|+|||++|..++.. +.+.+++.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999987 77777776543
No 329
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.94 E-value=0.017 Score=56.17 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
..+.-+.|.||+|+|||||++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4455688999999999999999999764
No 330
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.94 E-value=0.061 Score=51.77 Aligned_cols=73 Identities=25% Similarity=0.266 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechh--------h---hhh----hc----CCch-HHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE--------L---IQK----YL----GDGP-KLVRELFRVA 280 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~--------l---~~~----~~----g~~~-~~v~~lf~~a 280 (446)
.+..+.++|++|+||||++..+|..+ +..+..+++.- + ... .+ +..+ ...+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45568888999999999999999754 34454444321 1 000 01 1122 2335566666
Q ss_pred hhcCCeEEEEcCcccc
Q 013281 281 DDLSPSIVFIDEIDAV 296 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l 296 (446)
....+.+|+||+.-.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5456789999997544
No 331
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.93 E-value=0.0079 Score=55.65 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999999754
No 332
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.92 E-value=0.046 Score=53.68 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.....+.|.||||+|||||.++++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 345568899999999999999999754
No 333
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.90 E-value=0.033 Score=62.15 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~ 247 (446)
.....+.|.||+|+|||||++.|+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455689999999999999999994
No 334
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.87 E-value=0.015 Score=55.89 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL 261 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l 261 (446)
.-|.|.||+|+||||+|+.++..++ ..+..++...+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3588999999999999999999765 33455554443
No 335
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.86 E-value=0.012 Score=55.08 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=23.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.+ ..+.|.||+|+|||||++.++...
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456 678899999999999999999854
No 336
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.85 E-value=0.033 Score=64.55 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+++...|-|+|++|+|||||++++.+..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 3455569999999999999999999854
No 337
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.83 E-value=0.11 Score=52.78 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=44.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh-------hhhh---------c-C--Cc-hHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL-------IQKY---------L-G--DG-PKLVRELFRVA 280 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~s~l-------~~~~---------~-g--~~-~~~v~~lf~~a 280 (446)
++..+++.|++|+||||++..+|..+ +..+..+++.-. +..+ . + .. .......+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999865 344555443211 0000 0 1 11 22335566666
Q ss_pred hhcCCeEEEEcCcccc
Q 013281 281 DDLSPSIVFIDEIDAV 296 (446)
Q Consensus 281 ~~~~p~IL~IDEid~l 296 (446)
+.....+|+||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5445679999865443
No 338
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.83 E-value=0.011 Score=56.12 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
+.+...+.|.||+|+|||||+++++....
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44556688999999999999999998543
No 339
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.76 E-value=0.011 Score=55.32 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999999743
No 340
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.75 E-value=0.13 Score=55.58 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHH
Q 013281 223 KPPKGVILYGEPGTGKTLLAKA 244 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Lara 244 (446)
....++++.||+|+|||+.+-.
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHH
Confidence 3467899999999999999853
No 341
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.75 E-value=0.022 Score=60.15 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEechhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGSEL 261 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~----~~~i~v~~s~l 261 (446)
+..|+|.|+||+||||+|++++..++ .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 34588999999999999999999876 67888776554
No 342
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.72 E-value=0.014 Score=55.45 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
+.+...+.|.||+|+|||||++.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445667999999999999999999985
No 343
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.70 E-value=0.021 Score=50.26 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~ 250 (446)
-.+|+||+|+|||+|++||+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998765
No 344
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.67 E-value=0.1 Score=51.46 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
...|.|.|+||+||||++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999998765
No 345
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.66 E-value=0.013 Score=55.73 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4455668999999999999999999854
No 346
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.64 E-value=0.011 Score=55.80 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+...+.|.||+|+|||||++.++...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445568899999999999999999754
No 347
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.64 E-value=0.022 Score=59.80 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEechhhh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGSELI 262 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~----~~~i~v~~s~l~ 262 (446)
.+..+.|.|++|||||||+++|+..+. ..+..+++..+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 455689999999999999999999875 245556666554
No 348
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.60 E-value=0.013 Score=55.47 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4556679999999999999999999754
No 349
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.59 E-value=0.013 Score=55.05 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
+.+...+.|.||+|+|||||++.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345566899999999999999999985
No 350
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.58 E-value=0.26 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
+.+++.+|+|+|||..+-..+-.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46999999999999987766543
No 351
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.57 E-value=0.011 Score=54.46 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+..-+.|.||+|+|||||+++++...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445568999999999999999999854
No 352
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.54 E-value=0.012 Score=54.60 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455679999999999999999999865
No 353
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.54 E-value=0.015 Score=57.78 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+....-+.|.||+|||||||.++|+...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3445568899999999999999999854
No 354
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.53 E-value=0.014 Score=55.16 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456678999999999999999999754
No 355
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.52 E-value=0.13 Score=55.51 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.4
Q ss_pred CCceEEEEcCCCCcHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAK 243 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Lar 243 (446)
...++++.||+|+|||+.+.
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35789999999999999884
No 356
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.52 E-value=0.021 Score=50.77 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
..+|||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 568999999999999999999874
No 357
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.51 E-value=0.057 Score=55.00 Aligned_cols=37 Identities=35% Similarity=0.295 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech-hhh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS-ELI 262 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s-~l~ 262 (446)
..++|.+|+|+|||.++-.++...+...+.+... .+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 3599999999999999998888888777777655 443
No 358
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.51 E-value=0.012 Score=54.98 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445568899999999999999999754
No 359
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.50 E-value=0.027 Score=49.98 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
..-+.|.|++|+|||||++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999998864
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.50 E-value=0.024 Score=54.96 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35568899999999999999999865
No 361
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.50 E-value=0.012 Score=56.22 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+..-+.|.||+|+|||||+++++...
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3445568999999999999999999754
No 362
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.49 E-value=0.14 Score=48.91 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
+.+++.+|+|+|||+.+-..+-..+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 469999999999999877766666655555544
No 363
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.48 E-value=0.012 Score=55.22 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455668999999999999999999854
No 364
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.48 E-value=0.053 Score=58.30 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=29.1
Q ss_pred CeEEEEcCcccccccccCCCCCCcHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 013281 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (446)
Q Consensus 285 p~IL~IDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~vI~atn~~~ 341 (446)
|.+|++||--.- -+......+.+++..+.. .+..||++|...+
T Consensus 565 p~llllDEPt~~----------LD~~~~~~i~~~l~~l~~----~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 565 RTLYILDEPTTG----------LHVDDIARLLDVLHRLVD----NGDTVLVIEHNLD 607 (670)
T ss_dssp CEEEEEESTTTT----------CCHHHHHHHHHHHHHHHH----TTCEEEEECCCHH
T ss_pred CcEEEEeCCCCC----------CCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 469999997433 256667777888777632 2567888887643
No 365
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.48 E-value=0.13 Score=50.72 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=17.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVA 246 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia 246 (446)
+.+++.+|+|+|||+.+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 569999999999998765443
No 366
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.47 E-value=0.015 Score=55.32 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4455668899999999999999999754
No 367
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.47 E-value=0.22 Score=48.69 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=17.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVA 246 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia 246 (446)
++++++.+|+|+|||+.+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4689999999999998765433
No 368
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.45 E-value=0.02 Score=52.31 Aligned_cols=24 Identities=42% Similarity=0.384 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
...+.|.||+|+|||||+++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999975
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.45 E-value=0.03 Score=54.70 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.|.-+.|.||+||||||+++.++..+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344688999999999999999999875
No 370
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.43 E-value=0.086 Score=48.61 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=16.1
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAK 243 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Lar 243 (446)
.+.+++.+|+|+|||+.+-
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 3579999999999998754
No 371
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.41 E-value=0.039 Score=58.89 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.+++.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999988777654
No 372
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.40 E-value=0.013 Score=55.09 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
+.+...+.|.||+|+|||||++.++....
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34556689999999999999999998653
No 373
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.40 E-value=0.036 Score=47.26 Aligned_cols=21 Identities=43% Similarity=0.782 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~ 247 (446)
.|+|.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
No 374
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.39 E-value=0.027 Score=54.50 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.+.-+.|.||+|+|||||++.++..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 375
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.051 Score=47.77 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
...|+|.|++|+|||+|+.+++...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4469999999999999999998753
No 376
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.34 E-value=0.11 Score=53.26 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSE 260 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~ 260 (446)
+..|+|.|.||+||||+++.++..++ .+...++...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 45699999999999999999999864 3444544433
No 377
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.32 E-value=0.019 Score=57.07 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+....-+.|.||+|||||||.+.||...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3445568899999999999999999854
No 378
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.31 E-value=0.014 Score=55.87 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455668999999999999999999754
No 379
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.28 E-value=0.032 Score=51.68 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
+.-+.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999999984
No 380
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.27 E-value=0.014 Score=54.95 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455668899999999999999999864
No 381
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.26 E-value=0.02 Score=57.15 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+....-+.|.||+|||||||.+.||...
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3455568899999999999999999743
No 382
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.21 E-value=0.055 Score=55.10 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3445789999999999999888753
No 383
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.18 E-value=0.061 Score=49.22 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~~~~i~v~~s~l~~~ 264 (446)
.|-|+|..||||||+++.++. +|.+++ ++..+...
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~ 45 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHR 45 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHH
Confidence 588999999999999999998 887765 55554443
No 384
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.13 E-value=0.017 Score=57.19 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+....-+.|.||+|||||||.+.||...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3455568899999999999999999854
No 385
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.11 E-value=0.18 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=17.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVA 246 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia 246 (446)
.+.+++.+|+|+|||+.+-..+
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHH
Confidence 3569999999999997765443
No 386
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.11 E-value=0.043 Score=57.04 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSA 251 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~ 251 (446)
+..++|.|.+||||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999999874
No 387
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.04 E-value=0.17 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
.|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999888754
No 388
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.03 E-value=0.037 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~ 249 (446)
..+.|.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999865
No 389
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.00 E-value=0.23 Score=48.65 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
....+.|.|+||+||||++.+++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999998754
No 390
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.00 E-value=0.02 Score=57.12 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
....-+.|.||+|||||||.+.||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 445568899999999999999999854
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.00 E-value=0.016 Score=54.59 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
+.-|+|.|++|+||||+++.+++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44588999999999999999999984
No 392
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.91 E-value=0.033 Score=55.19 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSAT 252 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~ 252 (446)
...+.|.||+|+|||||++.++......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4569999999999999999999987654
No 393
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.90 E-value=0.034 Score=54.34 Aligned_cols=36 Identities=28% Similarity=0.223 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
.++..++|+|++|+||||++..+|..+ +..++.+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456679999999999999999998754 445555544
No 394
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.86 E-value=0.031 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 395
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.86 E-value=0.032 Score=49.69 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.+.|.|++|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 396
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.86 E-value=0.032 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.|.||+|+|||||+++++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 397
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.82 E-value=0.16 Score=50.19 Aligned_cols=20 Identities=35% Similarity=0.316 Sum_probs=16.4
Q ss_pred CceEEEEcCCCCcHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKA 244 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Lara 244 (446)
.+.+++.+|+|+|||+.+-.
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHH
Confidence 45699999999999987543
No 398
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.80 E-value=0.026 Score=56.72 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=23.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
+.+..-+.|.||+|||||||.++|+..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 455667999999999999999999973
No 399
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.2 Score=57.02 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~~ 258 (446)
...+|++||+|+|||+.+-..+... +...+.+..
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 3579999999999999876444332 444444443
No 400
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.76 E-value=0.024 Score=53.81 Aligned_cols=27 Identities=33% Similarity=0.569 Sum_probs=23.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+. ...+.|.||+|+|||||++.++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 44 5568999999999999999999865
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.74 E-value=0.017 Score=57.21 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+....-+.|.||+|||||||.+.||...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455568899999999999999999854
No 402
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.74 E-value=0.023 Score=54.68 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.+...+.|.||+|+|||||++.++...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4455668999999999999999999854
No 403
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.59 E-value=0.025 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 227 GVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.+.|.|++|+|||||++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999998764
No 404
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.59 E-value=0.034 Score=57.04 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
...++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3459999999999999999887754
No 405
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.55 E-value=0.069 Score=58.63 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.+++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999988777654
No 406
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.49 E-value=0.14 Score=59.18 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
.+...+.|.||+|+|||||++.++....
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445689999999999999999998653
No 407
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.47 E-value=0.05 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
+.-|.|.|++|+||||+++.++..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578899999999999999998774
No 408
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.46 E-value=0.21 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
...+++++|+|+|||..+-.++..+
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHHH
Confidence 3568999999999999987777643
No 409
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.45 E-value=0.045 Score=46.30 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|++.|++|+|||+|++++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 410
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.44 E-value=0.41 Score=42.71 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 411
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.41 E-value=0.054 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
...|+|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999999854
No 412
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.41 E-value=0.17 Score=47.49 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.6
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAK 243 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Lar 243 (446)
+.+++.+|+|+|||+.+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998754
No 413
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.037 Score=56.84 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+.....+.|.||+|+|||||++.++...
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34455669999999999999999999853
No 414
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.38 E-value=0.057 Score=48.76 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~ 250 (446)
...++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34699999999999999999998764
No 415
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.36 E-value=0.33 Score=48.38 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEech
Q 013281 227 GVILYGEPGTGKTLLAKAVANST----SATFLRVVGS 259 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~----~~~~i~v~~s 259 (446)
++++.+|+|+|||+.+-+++... +..++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 69999999999999998886654 5556555543
No 416
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.35 E-value=0.25 Score=48.37 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAK 243 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Lar 243 (446)
+.+++.+|+|+|||+.+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998743
No 417
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.33 E-value=0.26 Score=45.84 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
-.|+|.|.||+|||+|+.++...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 35999999999999999999763
No 418
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.30 E-value=0.26 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.4
Q ss_pred CceEEEEcCCCCcHHHHH-HHHH
Q 013281 225 PKGVILYGEPGTGKTLLA-KAVA 246 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~La-raia 246 (446)
.+.+++.||+|+|||+.+ -++.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999986 4343
No 419
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.27 E-value=0.048 Score=46.36 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|++.|++|+|||+|++++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 420
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.24 E-value=0.091 Score=48.26 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSATF 253 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~~~ 253 (446)
+.-+.|.|++|+||||+++.+++.++...
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 34588999999999999999999998643
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.24 E-value=0.052 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.-.+|+||.|+|||++..||+-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999998654
No 422
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.16 E-value=0.086 Score=53.72 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANSTSAT 252 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~~~~ 252 (446)
....-+.|.||+|||||||++.|++.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 344568999999999999999999987653
No 423
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.16 E-value=0.055 Score=48.08 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
...|+|.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 446999999999999999999863
No 424
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.16 E-value=0.053 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 425
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.15 E-value=0.03 Score=50.09 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=22.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 013281 221 GIKPPKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 221 g~~~~~~vLL~GppGtGKT~Laraia~~ 248 (446)
.+.....+.|.|++|+|||+|+++++..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4445556999999999999999988753
No 426
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.13 E-value=0.15 Score=54.79 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=17.6
Q ss_pred CCCCceEEEEcCCCCcHHHHH
Q 013281 222 IKPPKGVILYGEPGTGKTLLA 242 (446)
Q Consensus 222 ~~~~~~vLL~GppGtGKT~La 242 (446)
+....-+.|.||+|+|||||+
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 344566999999999999996
No 427
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.11 E-value=0.049 Score=46.87 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~ 247 (446)
.+.|.|++|+|||+|+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 428
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.10 E-value=0.16 Score=53.29 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELI 262 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~---~~~i~v~~s~l~ 262 (446)
+..|+|+|++|+||||+|+.++..++ .++..+++..+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 45688999999999999999998764 466666665543
No 429
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.09 E-value=0.05 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 430
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.08 E-value=0.042 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~ 247 (446)
-|+|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 431
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.07 E-value=0.46 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
+.+++.+|+|+|||..+-..+-.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999987765543
No 432
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.05 E-value=0.47 Score=46.61 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
...++|.|+||+|||+|+.+++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446999999999999999999864
No 433
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.02 E-value=0.3 Score=49.74 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.4
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAK 243 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Lar 243 (446)
++.+++.||+|+|||+.+-
T Consensus 131 ~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCEEEEECCSSSSHHHHHH
T ss_pred CCcEEEEcCCCCchhHHHH
Confidence 5789999999999998743
No 434
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.99 E-value=0.046 Score=50.67 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.-|.|.|++|+||||+++.+++.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 348889999999999999999876
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.96 E-value=0.074 Score=52.49 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSAT 252 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~ 252 (446)
....+.|.||+|+|||||++.+++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 35569999999999999999999988654
No 436
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.94 E-value=0.058 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 437
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.93 E-value=0.058 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
..|++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 438
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=92.88 E-value=1.8 Score=46.27 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~~~~~i~v~~ 258 (446)
..+.+++.+|+|+|||+.+-...-+.+...+.+..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~P 265 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 265 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcc
Confidence 34569999999999997666544444544444443
No 439
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.88 E-value=0.068 Score=47.24 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
.-.|+|.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446999999999999999999874
No 440
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.86 E-value=0.12 Score=46.84 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
...++|.|.+|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468889999999999999999875
No 441
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.86 E-value=0.061 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
.|++.|++|+|||+|++++....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 442
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.84 E-value=0.058 Score=46.28 Aligned_cols=22 Identities=50% Similarity=0.747 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~ 247 (446)
-.|+|.|++|+|||+|++++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3599999999999999999975
No 443
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.83 E-value=0.097 Score=57.47 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=17.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~ 247 (446)
.+++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999988766544
No 444
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.82 E-value=0.062 Score=46.27 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 445
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.81 E-value=0.063 Score=45.81 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|++.|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 446
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.78 E-value=0.42 Score=48.14 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.5
Q ss_pred CceEEEEcCCCCcHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLA 242 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~La 242 (446)
.+.+++.+|+|+|||+.+
T Consensus 93 g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCchHHH
Confidence 467999999999999853
No 447
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.73 E-value=0.064 Score=46.22 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
..|++.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 448
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.72 E-value=0.06 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 449
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.69 E-value=0.082 Score=45.09 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
...|++.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999763
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.67 E-value=0.076 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
+.-|.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999999876
No 451
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.67 E-value=0.065 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCCCce--EEEEcCCCCcHHHHHHHHHHH
Q 013281 222 IKPPKG--VILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 222 ~~~~~~--vLL~GppGtGKT~Laraia~~ 248 (446)
+.++.. +.|.||+|+|||||+++++..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 344555 889999999999999999874
No 452
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.60 E-value=0.11 Score=56.12 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=17.1
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAK 243 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Lar 243 (446)
..++++.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5679999999999999884
No 453
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.60 E-value=0.068 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 454
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.59 E-value=0.069 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|++.|++|+|||+|++++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 455
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.53 E-value=0.065 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
..|+|.|++|+|||+|+++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999873
No 456
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.53 E-value=0.088 Score=45.31 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~ 247 (446)
...|+|.|++|+|||+|+.++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44699999999999999999976
No 457
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.51 E-value=0.092 Score=46.45 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~ 247 (446)
..-.|+|.|++|+|||+|+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999864
No 458
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.51 E-value=0.072 Score=45.20 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|++.|++|+|||+|+.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 459
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.50 E-value=0.067 Score=45.64 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~ 247 (446)
.|+|.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999963
No 460
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.48 E-value=0.071 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
-.|+|.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999873
No 461
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.46 E-value=0.09 Score=48.54 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANSTSA 251 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~~~~ 251 (446)
+.-|.|.|++|+||||+++.+++.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445788899999999999999987644
No 462
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.46 E-value=0.07 Score=45.43 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~ 247 (446)
.|++.|++|+|||+|+.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 463
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.33 E-value=0.072 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 464
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.32 E-value=0.075 Score=46.18 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
..|+|.|+||+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 465
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.32 E-value=0.052 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
+.-+.|.|+.|+||||+++.++..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 445889999999999999999987
No 466
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.27 E-value=0.079 Score=46.01 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999874
No 467
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.27 E-value=0.079 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
..|+|.|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999874
No 468
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.26 E-value=0.07 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~ 247 (446)
-.|+|.|++|+|||+|++++..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3599999999999999999975
No 469
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.22 E-value=0.071 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~ 247 (446)
..+.|.||+|+|||||.++++.
T Consensus 70 ~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3588999999999999999998
No 470
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.21 E-value=0.077 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
..|+|.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999875
No 471
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.19 E-value=0.082 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
.-.|+|.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 472
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.18 E-value=0.076 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
-.|+|.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 473
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.18 E-value=0.081 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|++.|++|+|||+|+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 474
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.13 E-value=0.082 Score=46.44 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 475
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.12 E-value=0.085 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 476
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.11 E-value=0.084 Score=45.69 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
..|+|.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35999999999999999999874
No 477
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.10 E-value=0.11 Score=45.58 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
...|+|.|++|+|||+|+.++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446999999999999999999753
No 478
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.04 E-value=0.085 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 226 KGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 348889999999999999999876
No 479
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.02 E-value=0.12 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 013281 227 GVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~~ 249 (446)
-++|.|+.|+|||||++.++...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999754
No 480
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.01 E-value=0.082 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
-.|+|.|++|+|||+|++++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 481
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.94 E-value=0.082 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~ 247 (446)
-.|+|.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999875
No 482
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.89 E-value=0.094 Score=47.43 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 013281 226 KGVILYGEPGTGKTLLAKAVANSTSA 251 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~~~~ 251 (446)
.-.+|+||.|+|||++..||.-.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 45789999999999999999876543
No 483
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.85 E-value=0.094 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 484
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.83 E-value=0.095 Score=45.18 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
-.|+|.|++|+|||+|+.++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999874
No 485
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.80 E-value=0.096 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|++++...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 486
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.76 E-value=0.15 Score=50.75 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVA 246 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia 246 (446)
+.+++.+|+|+|||+.+-..+
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~ 57 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTA 57 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHH
Confidence 479999999999999554443
No 487
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.76 E-value=0.18 Score=50.53 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.....++|.||+|+|||+|++.|++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345569999999999999999998864
No 488
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.71 E-value=0.093 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~ 247 (446)
....|++.|++|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998874
No 489
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.67 E-value=0.093 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVAN 247 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~ 247 (446)
..|++.|++|+|||+|++++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999987
No 490
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.67 E-value=0.1 Score=45.78 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+.++...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 491
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.66 E-value=0.13 Score=50.06 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
..+++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 568999999999999999999875
No 492
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.65 E-value=0.68 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=18.4
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAK-AVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Lar-aia~~ 248 (446)
.+.+++.+|+|+|||+.+- ++...
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHHHH
Confidence 4679999999999998754 34443
No 493
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.65 E-value=0.1 Score=45.85 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999888764
No 494
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.60 E-value=0.11 Score=54.37 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 013281 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (446)
Q Consensus 223 ~~~~~vLL~GppGtGKT~Laraia~~~ 249 (446)
.+...+.|.||+|+|||||+++++...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999999743
No 495
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.59 E-value=0.1 Score=45.72 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|++++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 496
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.59 E-value=0.1 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 013281 227 GVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 227 ~vLL~GppGtGKT~Laraia~~ 248 (446)
.|+|.|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4999999999999999999864
No 497
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.58 E-value=0.18 Score=50.19 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 013281 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (446)
Q Consensus 224 ~~~~vLL~GppGtGKT~Laraia~~~---~~~~i~v~ 257 (446)
...++++.||+|+|||++++.++... +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 35579999999999999999998754 44554444
No 498
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.58 E-value=0.12 Score=45.04 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
...|+|.|++|+|||+|++.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 499
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.57 E-value=0.11 Score=44.98 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 013281 225 PKGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 225 ~~~vLL~GppGtGKT~Laraia~~ 248 (446)
.-.|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 500
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.52 E-value=0.1 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 013281 226 KGVILYGEPGTGKTLLAKAVANS 248 (446)
Q Consensus 226 ~~vLL~GppGtGKT~Laraia~~ 248 (446)
..|+|.|++|+|||+|+.++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999864
Done!