BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013282
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Query: 285 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344
SPDG+ + D+ L + G+ + +L GH + A+ P+G T A+ + DKT ++
Sbjct: 25 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 83
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 404
W+ RN + + L G+ ++R + ++ DG+ +A+A V +++ ++G +
Sbjct: 84 WN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 140
Query: 405 EISGISFSPDTESLF-------IGVWDRTYGSLLE 432
+ G++FSPD +++ + +W+R G LL+
Sbjct: 141 SVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 174
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 285 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344
SPDG+ + D+ L + G+ + +L GH + A+ P+G T A+ + DKT ++
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 404
W+ RN + + L G+ ++ + ++ DG+ +A+A V +++ ++G +
Sbjct: 166 WN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 222
Query: 405 EISGISFSPDTESLF-------IGVWDRTYGSLLE 432
+ G++FSPD +++ + +W+R G LL+
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 256
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 286 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345
PDG+ + D+ L + G+ + +L GH + A+ P+G T A+ + DKT ++W
Sbjct: 272 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 346 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 405
+ RN + + L G+ ++ + ++ DG+ +A+A V +++ ++G +
Sbjct: 331 N-RN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 387
Query: 406 ISGISFSPDTESLF-------IGVWDRTYGSLLE 432
+ G++FSPD +++ + +W+R G LL+
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 420
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 285 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344
SPDG+ + D+ L + G+ + +L GH A+ P+G T A+ + DKT ++
Sbjct: 230 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 404
W+ RN + + L G+ ++ + ++ DG+ +A+A V +++ ++G +
Sbjct: 289 WN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSS 345
Query: 405 EISGISFSPDTESLF-------IGVWDRTYGSLLE 432
+ G++FSPD +++ + +W+R G LL+
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 379
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 7/159 (4%)
Query: 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 328
L+ H W V S PD + + D+ L + G+ + +L GH A+ P
Sbjct: 422 LTGHSSSVWGVAFS---PDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 477
Query: 329 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 388
+G T A+ + DKT ++W+ RN + + L G+ ++R + ++ DG+ +A+A V ++
Sbjct: 478 DGQTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Query: 389 DVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427
+ ++G + + G++FSPD +++ D+T
Sbjct: 536 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 328
L+ H W V S PDG+ + D+ L + G+ + +L GH A+ P
Sbjct: 176 LTGHSSSVWGVAFS---PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 329 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 388
+G T A+ + DKT ++W+ RN + + L G+ ++ + + DG+ +A+A V ++
Sbjct: 232 DGQTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 389 DVKSGYEKEQEIDFFGEISGISFSPDTESLF-------IGVWDR 425
+ ++G + + G++FSPD +++ + +W+R
Sbjct: 290 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 15/171 (8%)
Query: 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 328
L+ H W V S PDG+ + D+ L + G+ + +L GH A+ P
Sbjct: 340 LTGHSSSVWGVAFS---PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 395
Query: 329 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 388
+G T A+ + DKT ++W+ RN + + L G+ ++ + ++ D + +A+A V ++
Sbjct: 396 DGQTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Query: 389 DVKSGYEKEQEIDFFGEISGISFSPDTESLF-------IGVWDRTYGSLLE 432
+ ++G + + G++FSPD +++ + +W+R G LL+
Sbjct: 454 N-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 502
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 11/115 (9%)
Query: 325 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 384
A+ P+G T A+ + DKT ++W+ RN + + L G+ ++ + ++ DG+ +A+A
Sbjct: 23 AFSPDGQTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 80
Query: 385 VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF-------IGVWDRTYGSLLE 432
V +++ ++G + + G++FSPD +++ + +W+R G LL+
Sbjct: 81 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 133
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 285 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344
SPDG+ + D+ L + G+ + +L GH + A+ P+G T A+ + DKT ++
Sbjct: 517 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Query: 345 WD 346
W+
Sbjct: 576 WN 577
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 64 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 103
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 104 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 162
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 222
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 223 YILAATLDNTL-KLWDYSKGKC 243
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + + G+ I + ++SD
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD 93
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 426 TYGSLLE 432
G L+
Sbjct: 154 KTGKCLK 160
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 180 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 235
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 236 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 294 GHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 244 PSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKLLII 293
P AVHF +S+ D R +D Q K P PV+ SP+GK ++
Sbjct: 168 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILA 226
Query: 294 VGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDLRNL 350
+ L D GK + + GH + FA+ G +G++D IW+L+
Sbjct: 227 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT- 285
Query: 351 SESVAVLKGNLGAIRSIRYTSDGRYMATA 379
E V L+G+ + S +A+A
Sbjct: 286 KEIVQKLQGHTDVVISTACHPTENIIASA 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 48 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 87
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 88 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 146
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 206
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 207 YILAATLDNTL-KLWDYSKGKC 227
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 77
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 426 TYGSLLE 432
G L+
Sbjct: 138 KTGKCLK 144
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 164 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 219
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 278 GHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 241 YGSPSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKL 290
+ P AVHF +S+ D R +D Q K P PV+ SP+GK
Sbjct: 149 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKY 207
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDL 347
++ + L D GK + + GH + FA+ G +G++D IW+L
Sbjct: 208 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Query: 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379
+ E V L+G+ + S +A+A
Sbjct: 268 QT-KEIVQKLQGHTDVVISTACHPTENIIASA 298
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 89
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 90 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 148
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 209 YILAATLDNTL-KLWDYSKGKC 229
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 79
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 426 TYGSLLE 432
G L+
Sbjct: 140 KTGKCLK 146
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 244 PSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKLLII 293
P AVHF +S+ D R +D Q K P PV+ SP+GK ++
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILA 212
Query: 294 VGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDLRNL 350
+ L D GK + + GH + FA+ G +G++D IW+L+
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT- 271
Query: 351 SESVAVLKGNLGAIRSIRYTSDGRYMATA 379
E V L+G+ + S +A+A
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASA 300
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 47 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 86
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 145
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 206 YILAATLDNTL-KLWDYSKGKC 226
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 76
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 426 TYGSLLE 432
G L+
Sbjct: 137 KTGKCLK 143
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 163 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 218
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 277 GHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 241 YGSPSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKL 290
+ P AVHF +S+ D R +D Q K P PV+ SP+GK
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKY 206
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLD---FSFASAWHPNGVTFATGNQDKTCRIWDL 347
++ + L D GK + + GH + FA+ G +G++D IW+L
Sbjct: 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379
+ E V L+G+ + S +A+A
Sbjct: 267 QT-KEIVQKLQGHTDVVISTACHPTENIIASA 297
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 92
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 93 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 151
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 212 YILAATLDNTL-KLWDYSKGKC 232
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 82
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 426 TYGSLLE 432
G L+
Sbjct: 143 KTGKCLK 149
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 169 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 224
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 283 GHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 244 PSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKLLII 293
P AVHF +S+ D R +D Q K P PV+ SP+GK ++
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILA 215
Query: 294 VGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDLRNL 350
+ L D GK + + GH + FA+ G +G++D IW+L+
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT- 274
Query: 351 SESVAVLKGNLGAIRSIRYTSDGRYMATA 379
E V L+G+ + S +A+A
Sbjct: 275 KEIVQKLQGHTDVVISTACHPTENIIASA 303
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 43 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 82
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 83 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 141
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 202 YILAATLDNTL-KLWDYSKGKC 222
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + + G+ I + ++SD
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD 72
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 426 TYGSLLE 432
G L+
Sbjct: 133 KTGKCLK 139
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 159 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 214
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 273 GHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 241 YGSPSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKL 290
+ P AVHF +S+ D R +D Q K P PV+ SP+GK
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKY 202
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLD---FSFASAWHPNGVTFATGNQDKTCRIWDL 347
++ + L D GK + + GH + FA+ G +G++D IW+L
Sbjct: 203 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Query: 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379
+ E V L+G+ + S +A+A
Sbjct: 263 QT-KEIVQKLQGHTDVVISTACHPTENIIASA 293
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 89
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 90 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 148
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 209 YILAATLDNTL-KLWDYSKGKC 229
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + + G+ I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD 79
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 426 TYGSLLE 432
G L+
Sbjct: 140 KTGKCLK 146
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 244 PSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKLLII 293
P AVHF +S+ D R +D Q K P PV+ SP+GK ++
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILA 212
Query: 294 VGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDLRNL 350
+ L D GK + + GH + FA+ G +G++D IW+L+
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT- 271
Query: 351 SESVAVLKGNLGAIRSIRYTSDGRYMATA 379
E V L+G+ + S +A+A
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASA 300
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 47 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 86
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 145
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 206 YILAATLDNTL-KLWDYSKGKC 226
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + + G+ I + ++SD
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD 76
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 426 TYGSLLE 432
G L+
Sbjct: 137 KTGKCLK 143
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 163 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 218
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 277 GHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 241 YGSPSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKL 290
+ P AVHF +S+ D R +D Q K P PV+ SP+GK
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKY 206
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLD---FSFASAWHPNGVTFATGNQDKTCRIWDL 347
++ + L D GK + + GH + FA+ G +G++D IW+L
Sbjct: 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Query: 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379
+ E V L+G+ + S +A+A
Sbjct: 267 QT-KEIVQKLQGHTDVVISTACHPTENIIASA 297
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 92
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 93 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 151
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 212 YILAATLDNTL-KLWDYSKGKC 232
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 82
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 426 TYGSLLE 432
G L+
Sbjct: 143 KTGKCLK 149
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 169 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 224
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 283 GHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 244 PSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKLLII 293
P AVHF +S+ D R +D Q K P PV+ SP+GK ++
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILA 215
Query: 294 VGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDLRNL 350
+ L D GK + + GH + FA+ G +G++D IW+L+
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT- 274
Query: 351 SESVAVLKGNLGAIRSIRYTSDGRYMATA 379
E V L+G+ + S +A+A
Sbjct: 275 KEIVQKLQGHTDVVISTACHPTENIIASA 303
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 89
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 90 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 148
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 209 YILAATLDNTL-KLWDYSKGKC 229
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A + DK +IW + + + G+ I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD 79
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 426 TYGSLLE 432
G L+
Sbjct: 140 KTGKCLK 146
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 166 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 221
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 280 GHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 244 PSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKLLII 293
P AVHF +S+ D R +D Q K P PV+ SP+GK ++
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILA 212
Query: 294 VGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDLRNL 350
+ L D GK + + GH + FA+ G +G++D IW+L+
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT- 271
Query: 351 SESVAVLKGNLGAIRSIRYTSDGRYMATA 379
E V L+G+ + S +A+A
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASA 300
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 52 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 91
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 92 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 150
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 210
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 211 YILAATLDNTL-KLWDYSKGKC 231
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 81
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 426 TYGSLLE 432
G L+
Sbjct: 142 KTGKCLK 148
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 168 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 223
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 282 GHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 244 PSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKLLII 293
P AVHF +S+ D R +D Q K P PV+ SP+GK ++
Sbjct: 156 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILA 214
Query: 294 VGDNPDGLLVDSMTGKTIASLCGHLD---FSFASAWHPNGVTFATGNQDKTCRIWDLRNL 350
+ L D GK + + GH + FA+ G +G++D IW+L+
Sbjct: 215 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT- 273
Query: 351 SESVAVLKGNLGAIRSIRYTSDGRYMATA 379
E V L+G+ + S +A+A
Sbjct: 274 KEIVQKLQGHTDVVISTACHPTENIIASA 302
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 92
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 93 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 151
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 212 YILAATLDNTL-KLWDYSKGKC 232
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + + G+ I + ++SD
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD 82
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 426 TYGSLLE 432
G L+
Sbjct: 143 KTGKCLK 149
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 169 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 224
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 283 GHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 241 YGSPSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKL 290
+ P AVHF +S+ D R +D Q K P PV+ SP+GK
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKY 212
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDL 347
++ + L D GK + + GH + FA+ G +G++D IW+L
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379
+ E V L+G+ + S +A+A
Sbjct: 273 QT-KEIVQKLQGHTDVVISTACHPTENIIASA 303
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 71 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 110
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 111 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 169
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 230 YILAATLDNTL-KLWDYSKGKC 250
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 100
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 426 TYGSLLE 432
G L+
Sbjct: 161 KTGKCLK 167
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 187 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 242
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 243 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 301 GHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 241 YGSPSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKL 290
+ P AVHF +S+ D R +D Q K P PV+ SP+GK
Sbjct: 172 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKY 230
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDL 347
++ + L D GK + + GH + FA+ G +G++D IW+L
Sbjct: 231 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Query: 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379
+ E V L+G+ + S +A+A
Sbjct: 291 QT-KEIVQKLQGHTDVVISTACHPTENIIASA 321
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 69 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 108
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 109 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 167
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 228 YILAATLDNTL-KLWDYSKGKC 248
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + LG I + ++SD
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD 98
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 426 TYGSLLE 432
G L+
Sbjct: 159 KTGKCLK 165
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 185 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 240
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 299 GHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 241 YGSPSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKL 290
+ P AVHF +S+ D R +D Q K P PV+ SP+GK
Sbjct: 170 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKY 228
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFS---FASAWHPNGVTFATGNQDKTCRIWDL 347
++ + L D GK + + GH + FA+ G +G++D IW+L
Sbjct: 229 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Query: 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379
+ E V L+G+ + S +A+A
Sbjct: 289 QT-KEIVQKLQGHTDVVISTACHPTENIIASA 319
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 46 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 85
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + + L
Sbjct: 86 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTL 144
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 204
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 205 YILAATLDNTL-KLWDYSKGKC 225
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + + G+ I + ++SD
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD 75
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 426 TYGSLLE 432
G L+
Sbjct: 136 KTGKCLK 142
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 162 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 217
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 276 GHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 244 PSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKLLII 293
P AVHF +S+ D R +D Q K P PV+ SP+GK ++
Sbjct: 150 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILA 208
Query: 294 VGDNPDGLLVDSMTGKTIASLCGHLD---FSFASAWHPNGVTFATGNQDKTCRIWDLRNL 350
+ L D GK + + GH + FA+ G +G++D IW+L+
Sbjct: 209 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT- 267
Query: 351 SESVAVLKGNLGAIRSIRYTSDGRYMATA 379
E V L+G+ + S +A+A
Sbjct: 268 KEIVQKLQGHTDVVISTACHPTENIIASA 296
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 25/202 (12%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 89
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + L
Sbjct: 90 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GMCLKTL 148
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 417 SLFIGVWDRTYGSLLEY--GRC 436
+ D T L +Y G+C
Sbjct: 209 YILAATLDNTL-KLWDYSKGKC 229
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + + G+ I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD 79
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 426 TYGSLLE 432
G L+
Sbjct: 140 KTGMCLK 146
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +N +
Sbjct: 166 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKL 221
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 280 GHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 241 YGSPSGAVHF-------TASNNDCGVRDFDMGKYQLSKHF---RFPWPVNHSSQSPDGKL 290
+ P AVHF +S+ D R +D Q K P PV+ SP+GK
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKY 209
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLD---FSFASAWHPNGVTFATGNQDKTCRIWDL 347
++ + L D GK + + GH + FA+ G +G++D IW+L
Sbjct: 210 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Query: 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379
+ E V L+G+ + S +A+A
Sbjct: 270 QT-KEIVQKLQGHTDVVISTACHPTENIIASA 300
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 86/203 (42%), Gaps = 29/203 (14%)
Query: 238 VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN 297
++I+G+ G T S + G+ D + S D LL+ D+
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDV--------------------AWSSDSNLLVSASDD 89
Query: 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357
+ D +GK + +L GH ++ F ++P +G+ D++ RIWD++ + L
Sbjct: 90 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GMCLKTL 148
Query: 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTE 416
+ + ++ + DG + ++ ++D SG + ID +S + FSP+ +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 417 SLF-------IGVWDRTYGSLLE 432
+ + +WD + G L+
Sbjct: 209 YILAATLDNDLKLWDYSKGKCLK 231
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH + + PNG A+ + DK +IW + + + G+ I + ++SD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD 79
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-------VWDR 425
+ +A + ++DV SG + + +F+P + + G +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 426 TYGSLLE 432
G L+
Sbjct: 140 KTGMCLK 146
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Query: 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGV 259
L+V+ + G +C+ D DDN + V+ SP+G A+ +ND +
Sbjct: 166 LIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNDLKL 221
Query: 260 RDFDMGK----YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC 315
D+ GK Y K+ ++ N S GK ++ ++ + + T + + L
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Query: 316 GHLDFSFASAWHP--NGVTFATGNQDKTCRIW 345
GH D ++A HP N + A DKT ++W
Sbjct: 280 GHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 285 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344
SPDGK L ++ + D K + L GH ++ + P+G +G+ D+T RI
Sbjct: 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-------EKE 397
WDLR + L G DG+Y+A V V+D ++G+ E E
Sbjct: 192 WDLRT-GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 398 QEIDFFGEISGISFSPDTESLFIGVWDRT 426
+ + F+ D +S+ G DR+
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 22/170 (12%)
Query: 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP-DGKLL--------IIV 294
PSG + + D VR +D+ Q S V + SP DGK + + V
Sbjct: 175 PSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 295 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 354
D+ G LV+ + + S GH D ++ + +G + +G+ D++ ++W+L+N +
Sbjct: 234 WDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292
Query: 355 AVLKGNLGA-----------IRSIRYTSDGRYMATAEPADFVHVYDVKSG 393
N G + S+ T + Y+ + V +D KSG
Sbjct: 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 364 IRSIRYTSDGRYMATAEPADFVHVYDVKS--------GYEKEQEIDFFGEISGISFSPDT 415
IRS+ ++ DG+++AT + ++D+++ G+E+ +I + + P
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ--------DIYSLDYFPSG 177
Query: 416 ESLFIGVWDRT 426
+ L G DRT
Sbjct: 178 DKLVSGSGDRT 188
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 286 PDGKLLIIVGD-NPDGLLVDSMTGKTIASL-----CGH----LDFSFASAWHPNGVTFAT 335
PD + +I G + +L D TG+ I+ GH L S S N F +
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL---NANMFIS 223
Query: 336 GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY- 394
G+ D T R+WDLR S +V G+ G I S+++ DG+ T ++D+++G+
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 395 ------EKEQEIDFFGEISGISFSPDTESLFIG-------VWDRTYGSL-LEYGRCRN 438
E ++ + ++ ++FS LF G VWD + L G +N
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 293 IVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 350
IV + DG L+ +++T + ++ H + A+ PNG + A G D C I++L +
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140
Query: 351 SESVA------VLKGNLGAIRSIRYTSDGRYMATAEPADFVHV-YDVKSGYEKEQEIDFF 403
++ VL G+ G S +Y D D V +DV +G Q I F
Sbjct: 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG----QRISIF 196
Query: 404 GEISGISFSPDTESLFI 420
G + D SL I
Sbjct: 197 GSEFPSGHTADVLSLSI 213
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 283 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 343 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 401
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 402 FFGEISGISFSPDTESLFIGVWD 424
+S + + D ++ G WD
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWD 333
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 268 QLSKHFRFPWPVNHS---SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 324
L+K + W + S S DGKL+I DS T + ++ +
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIW----------DSYTTNKVHAIPLRSSWVMTC 103
Query: 325 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEP 381
A+ P+G A G D C I++L+ +V V L G+ G + R+ D + + T+
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG 162
Query: 382 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424
++D+++G + G++ +S +PDT G D
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 393 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426
G ++ +I+ I F P+ + G D T
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 194 TLAVKDKLLVAGGFQGELICKHLD-RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTA 252
+LA +L V+G K D R G+ C +T + NA+ + P+G F
Sbjct: 191 SLAPDTRLFVSGACDASA--KLWDVREGM--CRQTFTGHESDINAICFF--PNGNA-FAT 243
Query: 253 SNNDCGVRDFDMGKYQ---LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 309
++D R FD+ Q H + S S G+LL+ D+ + + D++
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 310 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346
L GH + +G+ ATG+ D +IW+
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 283 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 343 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 401
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 402 FFGEISGISFSPDTESLFIGVWD 424
+S + + D ++ G WD
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWD 333
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 268 QLSKHFRFPWPVNHS---SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 324
L+K + W + S S DGKL+I DS T + ++ +
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIW----------DSYTTNKVHAIPLRSSWVMTC 103
Query: 325 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEP 381
A+ P+G A G D C I++L+ +V V L G+ G + R+ D + + T+
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG 162
Query: 382 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424
++D+++G + G++ +S +PDT G D
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 393 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426
G ++ +I+ I F P+ + G D T
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 309 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSI 367
+T +L GHL +A W + + +QD IWD ++ A+ L+ + + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTC 103
Query: 368 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 408
Y G Y+A + +Y++K+ +E + E++G
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAG 141
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 194 TLAVKDKLLVAGGFQGELICKHLD-RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTA 252
+LA +L V+G K D R G+ C +T + NA+ + P+G F
Sbjct: 191 SLAPDTRLFVSGACDASA--KLWDVREGM--CRQTFTGHESDINAICFF--PNGNA-FAT 243
Query: 253 SNNDCGVRDFDMGKYQ---LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 309
++D R FD+ Q H + S S G+LL+ D+ + + D++
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 310 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346
L GH + +G+ ATG+ D +IW+
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 283 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 343 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 401
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 402 FFGEISGISFSPDTESLFIGVWD 424
+S + + D ++ G WD
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWD 333
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 268 QLSKHFRFPWPVNHS---SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 324
L+K + W + S S DGKL+I DS T + ++ +
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIW----------DSYTTNKVHAIPLRSSWVMTC 103
Query: 325 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEP 381
A+ P+G A G D C I++L+ +V V L G+ G + R+ D + + T+
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG 162
Query: 382 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424
++D+++G + G++ +S +PDT G D
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 393 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426
G ++ +I+ I F P+ + G D T
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 309 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSI 367
+T +L GHL +A W + + +QD IWD ++ A+ L+ + + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTC 103
Query: 368 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 408
Y G Y+A + +Y++K+ +E + E++G
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAG 141
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 194 TLAVKDKLLVAGGFQGELICKHLD-RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTA 252
+LA +L V+G K D R G+ C +T + NA+ + P+G F
Sbjct: 191 SLAPDTRLFVSGACDASA--KLWDVREGM--CRQTFTGHESDINAICFF--PNGNA-FAT 243
Query: 253 SNNDCGVRDFDMGKYQ---LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 309
++D R FD+ Q H + S S G+LL+ D+ + + D++
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 310 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346
L GH + +G+ ATG+ D +IW+
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 283 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 343 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 401
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Query: 402 FFGEISGISFSPDTESLFIGVWD 424
+S + + D ++ G WD
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWD 333
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 268 QLSKHFRFPWPVNHS---SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 324
L+K + W + S S DGKL+I DS T + ++ +
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIW----------DSYTTNKVHAIPLRSSWVMTC 103
Query: 325 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEP 381
A+ P+G A G D C I++L+ +V V L G+ G + R+ D + + T+
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG 162
Query: 382 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424
++D+++G + G++ +S +PDT G D
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 393 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426
G ++ +I+ I F P+ + G D T
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 194 TLAVKDKLLVAGGFQGELICKHLD-RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTA 252
+LA +L V+G K D R G+ C +T + NA+ + P+G F
Sbjct: 191 SLAPDTRLFVSGACDASA--KLWDVREGM--CRQTFTGHESDINAICFF--PNGNA-FAT 243
Query: 253 SNNDCGVRDFDMGKYQ---LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 309
++D R FD+ Q H + S S G+LL+ D+ + + D++
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 310 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346
L GH + +G+ ATG+ D +IW+
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 283 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342
S +PD +L + + L D G + GH A + PNG FATG+ D TC
Sbjct: 202 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 261
Query: 343 RIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 401
R++DLR E + N + I S+ ++ GR + +V+D
Sbjct: 262 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 321
Query: 402 FFGEISGISFSPDTESLFIGVWD 424
+S + + D ++ G WD
Sbjct: 322 HDNRVSCLGVTDDGMAVATGSWD 344
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 268 QLSKHFRFPWPVNHS---SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 324
L+K + W + S S DGKL+I DS T + ++ +
Sbjct: 65 HLAKIYAMHWGTDSRLLVSASQDGKLIIW----------DSYTTNKVHAIPLRSSWVMTC 114
Query: 325 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAV---LKGNLGAIRSIRYTSDGRYMATAEP 381
A+ P+G A G D C I++L+ +V V L G+ G + R+ D + + T+
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG 173
Query: 382 ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424
++D+++G + G++ +S +PDT G D
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 216
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392
T + D TC +WD+ ++ + G + S+ D R + ++DV+
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 393 GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426
G ++ +I+ I F P+ + G D T
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 309 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSI 367
+T +L GHL +A W + + +QD IWD ++ A+ L+ + + +
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTC 114
Query: 368 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 408
Y G Y+A + +Y++K+ +E + E++G
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAG 152
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 194 TLAVKDKLLVAGGFQGELICKHLD-RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTA 252
+LA +L V+G K D R G+ C +T + NA+ + P+G F
Sbjct: 202 SLAPDTRLFVSGACDASA--KLWDVREGM--CRQTFTGHESDINAICFF--PNGNA-FAT 254
Query: 253 SNNDCGVRDFDMGKYQ---LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK 309
++D R FD+ Q H + S S G+LL+ D+ + + D++
Sbjct: 255 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 314
Query: 310 TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346
L GH + +G+ ATG+ D +IW+
Sbjct: 315 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 285 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344
S G + G + ++ D +G+ + + H + ++P+G FA+G+ D TCR+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 345 WDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 402
+DLR E K ++ GA S+ ++ GR + ++V+DV G
Sbjct: 267 YDLRADREVAIYSKESIIFGA-SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325
Query: 403 FGEISGISFSPDTESLFIGVWDRT 426
+S + SPD + G WD T
Sbjct: 326 ENRVSTLRVSPDGTAFCSGSWDHT 349
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 17/207 (8%)
Query: 150 HFSVIHWSSLTSSRSQVLNVSGH--VAPSEKHPGSLLEGFTQTQVSTLAV------KDKL 201
H + + S T+S Q+L SG A + G LL+ F L +
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261
V+GG + + + R G + T++ + N+V Y PSG F + ++D R
Sbjct: 213 FVSGGCDKKAMVWDM-RSGQCVQAFETHESD--VNSVRYY--PSGDA-FASGSDDATCRL 266
Query: 262 FDM-GKYQLSKHFRFPWPVNHSSQ--SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 318
+D+ +++ + + SS S G+LL ++ + D + G ++ L GH
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326
Query: 319 DFSFASAWHPNGVTFATGNQDKTCRIW 345
+ P+G F +G+ D T R+W
Sbjct: 327 NRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 293 IVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR-N 349
IV + DG ++ DS T ++ + A A+ P+G A G D C ++ L +
Sbjct: 79 IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138
Query: 350 LSESVAVLKGNLGA----IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE 405
+E++A K ++ + + +T+ + TA ++DV+SG + +
Sbjct: 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198
Query: 406 ISGISFSP-DTESLFIG--------VWDRTYGSLLE 432
+ + +P +T + F+ VWD G ++
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 334 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393
A+ + D R+WDL N + ++ G + A ++ ++ D +Y+AT V+++ V+SG
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDA-WTLAFSPDSQYLATGTHVGKVNIFGVESG 154
Query: 394 YEKEQEIDFFGE-ISGISFSPDTESL-------FIGVWDRTYGSLL 431
+KE +D G+ I I++SPD + L I ++D G LL
Sbjct: 155 -KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 307 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS 366
+GK SL F + A+ P+G A+G D I+D+ + + L+G+ IRS
Sbjct: 153 SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRS 211
Query: 367 IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG-------ISFSPD 414
+ ++ D + + TA ++ +YDV Q + G +SG ++F PD
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDV-------QHANLAGTLSGHASWVLNVAFCPD 259
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 278 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN 337
P+ + SPD +LL+ D+ + D +L GH + A+ P+ F + +
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267
Query: 338 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 389
DK+ ++WD+ + V + + ++Y +G + + +H+YD
Sbjct: 268 SDKSVKVWDVGTRT-CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 285 SPDGKLLIIVGDNPDGLL--VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342
SPDGK L DG++ D TGK + +L GH + + P+ T + D
Sbjct: 173 SPDGKYL--ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 230
Query: 343 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 390
+I+D+++ + L G+ + ++ + D + ++ V V+DV
Sbjct: 231 KIYDVQH-ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPV--NHSSQSPDGKLLIIVGDN-PDG 300
P FT+S+ D ++ +D Q + F F V +H S L+ VG P
Sbjct: 109 PHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV 168
Query: 301 LLVDSMTGKTIASLCGHLDFSFASAWHPN-GVTFATGNQDKTCRIWDLRNLS-------- 351
L D +G L GH A +W P AT + D ++WD+R S
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228
Query: 352 ----ESVAVLKGNL---GAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393
+S AV N G + + +TSDG ++ T + + +++ +G
Sbjct: 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 306 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 365
+TG+ H + A + F++ + DKT +IW LS + LKG+ G +R
Sbjct: 1080 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVR 1138
Query: 366 SIRYTSDGRYMATAEPADFVHVYDVKSGY---------EKEQEIDFFGEISGISFSPDTE 416
++ DG +AT + + +++V G +E G ++ + FSPD++
Sbjct: 1139 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSK 1198
Query: 417 SL 418
+L
Sbjct: 1199 TL 1200
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 311 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRY 369
+A GHL + + P+G +F T + D+T R+W+ + + + S VLK + +
Sbjct: 882 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV----- 936
Query: 370 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE--ISGISFSPDTESLFIG 421
+ M A D + + +G K +ID+ E +S SP E + G
Sbjct: 937 FQENETMVLA--VDNIRGLQLIAG--KTGQIDYLPEAQVSCCCLSPHLEYVAFG 986
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 279 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 338
V H+ S DG+ + G + + + TG+ + + H D A+ + AT +
Sbjct: 625 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 684
Query: 339 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEK 396
DK +IWD + V + + +T+ ++ A ++ F+ ++D+ +K
Sbjct: 685 DKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QK 740
Query: 397 EQEIDFFGEISGIS---FSPDTESL 418
E FG + ++ FSPD E L
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELL 765
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 22/159 (13%)
Query: 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLL 302
SP G+ TAS+ D +R ++ K + ++ Q + + +++ DN GL
Sbjct: 898 SPDGSSFLTASD-DQTIRVWETKKVCKNSAIVLKQEIDVVFQ--ENETMVLAVDNIRGLQ 954
Query: 303 VDSMTGKTIASLCGHLDF-----SFASAWHPNGVTFATGNQDKTCRIWDLRN---LSESV 354
+ + GKT G +D+ P+ A G++D +I +L N S V
Sbjct: 955 L--IAGKT-----GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1007
Query: 355 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393
G+ A+R I++T+DG+ + ++ + V++ ++G
Sbjct: 1008 ----GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 306 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 365
+TG+ H + A + F++ + DKT +IW LS + LKG+ G +R
Sbjct: 1073 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVR 1131
Query: 366 SIRYTSDGRYMATAEPADFVHVYDVKSGY---------EKEQEIDFFGEISGISFSPDTE 416
++ DG +AT + + +++V G +E G ++ + FSPD++
Sbjct: 1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSK 1191
Query: 417 SL 418
+L
Sbjct: 1192 TL 1193
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 311 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRY 369
+A GHL + + P+G +F T + D+T R+W+ + + + S VLK + +
Sbjct: 875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV----- 929
Query: 370 TSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE--ISGISFSPDTESLFIG 421
+ M A D + + +G K +ID+ E +S SP E + G
Sbjct: 930 FQENETMVLA--VDNIRGLQLIAG--KTGQIDYLPEAQVSCCCLSPHLEYVAFG 979
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 279 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 338
V H+ S DG+ + G + + + TG+ + + H D A+ + AT +
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 677
Query: 339 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--FVHVYDVKSGYEK 396
DK +IWD + V + + +T+ ++ A ++ F+ ++D+ +K
Sbjct: 678 DKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QK 733
Query: 397 EQEIDFFGEISGIS---FSPDTESL 418
E FG + ++ FSPD E L
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELL 758
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 240 IYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPD 299
+ SP G+ TAS+ D +R ++ K + ++ Q + + +++ DN
Sbjct: 888 VMFSPDGSSFLTASD-DQTIRVWETKKVCKNSAIVLKQEIDVVFQ--ENETMVLAVDNIR 944
Query: 300 GLLVDSMTGKTIASLCGHLDF-----SFASAWHPNGVTFATGNQDKTCRIWDLRN---LS 351
GL + + GKT G +D+ P+ A G++D +I +L N S
Sbjct: 945 GLQL--IAGKT-----GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997
Query: 352 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393
V G+ A+R I++T+DG+ + ++ + V++ ++G
Sbjct: 998 SGV----GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 316 GHLDFSFASAWHPNGV--TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 373
GH D+ + PN + T + + DKT ++W+L N + L G+ G + ++ + DG
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDG 573
Query: 374 RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF------IGVWDRTY 427
A+ V ++D+ G +K ++ I + FSP+ L I +WD
Sbjct: 574 SLCASGGKDGVVLLWDLAEG-KKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLES 632
Query: 428 GSLLE 432
S++E
Sbjct: 633 KSIVE 637
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 329 NGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATAEPADF 384
N + ++DK+ +W L ++ V L G+ + + +SDG++ +
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 385 VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 437
+ ++D+ +G + + ++ ++FS D + DRT G C+
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 309 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIR 368
K ++L GH + A P+G A+G +D +WDL + + L+ N I ++
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEAN-SVIHALC 609
Query: 369 YTSDGRYMATAEPADFVHVYDVKS 392
+ S RY A + ++D++S
Sbjct: 610 F-SPNRYWLCAATEHGIKIWDLES 632
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 285 SPDGKLLIIVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342
SP +IV D L+ D TG+ + L GH ++ + P+G A+ ++D
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 343 RIWDLRN---LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD-------VKS 392
R+WDL LSE A GA + S RY A + ++D V+
Sbjct: 221 RLWDLTKGEALSEMAA------GAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVEL 274
Query: 393 GYEKEQEIDFFGEISGISFSPDTESLFIG 421
E + E I++S D +L+ G
Sbjct: 275 APEHQGSKKIVPECVSIAWSADGSTLYSG 303
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 289 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 348
K L+ G NPD + G L GH F A NG + + D + R+W+L+
Sbjct: 38 KTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ 97
Query: 349 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS----GYEKEQEIDFFG 404
N L G+ + S+ ++ D R + + + + V++VK + D+
Sbjct: 98 NGQCQYKFL-GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW-- 154
Query: 405 EISGISFSPDTESLFI---------GVWDRTYGSLL 431
+S + FSP ++ I VWD G L+
Sbjct: 155 -VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 266 KYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 325
KY LS H PV P +++ ++ + D TG +L GH D +
Sbjct: 101 KYALSGHRS---PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 157
Query: 326 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFV 385
+ +G A+ + D T ++WD + E + + G+ + S+ +G ++ +A +
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 386 HVYDVKSGY 394
+++V++GY
Sbjct: 217 KMWEVQTGY 225
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 302 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 361
+ D TG + +L GH ++ +H G + DKT R+WD +N + L +
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHE 380
Query: 362 GAIRSIRYTSDGRYMATAEPADFVHVYDVK 391
+ S+ + Y+ T V V++ +
Sbjct: 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 279 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 338
V+ S P+G ++ + + + TG + + GH ++ + +G A+ +
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 339 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE 380
D+T R+W + E A L+ + + I + + Y + +E
Sbjct: 255 DQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISE 295
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 288 GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347
GK ++ D+ + D + + +L H F + +H TG+ D+T ++W+
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Query: 348 R 348
R
Sbjct: 410 R 410
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 330 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 389
G +G++DKT ++WD+ + + L G+ +R + + S G+++ + + V+D
Sbjct: 308 GPFLLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 390 VKS 392
K+
Sbjct: 367 YKN 369
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 309 KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW--DLRNLSESVAVLKGNLGAIRS 366
+ + +L GH + + AW P+G AT ++DK+ +W D + E V+VL + ++
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 367 IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 403
+ + +A+A D V +Y +E+E D+
Sbjct: 156 VVWHPSQELLASASYDDTVKLY-------REEEDDWV 185
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 285 SPDGKLLIIVGDNPD----GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK 340
+P G LL G + G DS K++ S GH AW P G A+ + D
Sbjct: 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASASFDA 83
Query: 341 TCRIWDL-RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 397
T IW ++ E V L+G+ ++S+ + G +AT V V++V E E
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 325 AWHPNGVTFATGNQDKTCRIWDLRN---LSESVAVLKGNLGAIRSIRYTSDGRYMATAEP 381
AW+P G A+ D+ RIW + +SV + +G+ +R + ++ G Y+A+A
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-LSEGHQRTVRKVAWSPCGNYLASAS- 80
Query: 382 ADFVHVYDVKSGYEKEQEIDF---------FGEISGISFSP 413
+D + K+ + DF E+ ++++P
Sbjct: 81 ------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRN 349
+++ GDN +++ +M GK + +L H A +P F AT + D+T +IWDLR
Sbjct: 223 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Query: 350 LSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVY 388
+ + L + + + ++ DG + T + + VY
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRN 349
+++ GDN +++ +M GK + +L H A +P F AT + D+T +IWDLR
Sbjct: 223 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Query: 350 LSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVY 388
+ + L + + + ++ DG + T + + VY
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRN 349
+++ GDN +++ +M GK + +L H A +P F AT + D+T +IWDLR
Sbjct: 224 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 283
Query: 350 LSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVY 388
+ + L + + + ++ DG + T + + VY
Sbjct: 284 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 15/200 (7%)
Query: 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQ-SPDGKLLIIVGDNPDGLL 302
PS + ++D V F+ ++ F HS + +PDG L G + +L
Sbjct: 157 PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216
Query: 303 VDSMTGKTIASL-------CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 355
+ + G H F W P+G A+ + DKT +IW++ L
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276
Query: 356 VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 415
+ G + + + + + F++ + + G + I+ +S S D
Sbjct: 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336
Query: 416 ESLF-------IGVWDRTYG 428
++LF I WD + G
Sbjct: 337 KTLFSADAEGHINSWDISTG 356
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 325 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 359
+W P+ V ATG+ D + +W++ S+ ++KG
Sbjct: 543 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 329 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 388
+ F++ + DKT +IW +L + L+G+ G +R ++ D +AT + + ++
Sbjct: 1102 DATKFSSTSADKTAKIWSF-DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Query: 389 DVKSG--------YEKEQEIDFFGEISGISFSPDTESL-----FIGVWDRTYG 428
+V +G +E G ++ + FSPD + L +I W+ G
Sbjct: 1161 NVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTG 1213
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 279 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 338
+ + SP L ++ L ++ + +A GHL + + P+G +F T +
Sbjct: 849 IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSD 908
Query: 339 DKTCRIWDLRNLSESVAVL 357
D+T R+W+ + + ++ AV+
Sbjct: 909 DQTIRLWETKKVCKNSAVM 927
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 279 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 338
V H+ S DG+ + G + + + TG+ + + H D A+ + AT +
Sbjct: 624 VYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSV 683
Query: 339 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY--MATAEPADFVHVYDVKSGYEK 396
DK +IW+ E V + + +T+ + +AT F+ ++D+ +K
Sbjct: 684 DKKVKIWNSMT-GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN---QK 739
Query: 397 EQEIDFFGEISGIS---FSPDTESLF-------IGVWDRT 426
E FG + ++ FSPD + L + +WD T
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 316 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN---------LSESVAVLKGNLGAIRS 366
GH SA+ + ATG+ + RIW++ N LSE A G G +
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG--GWVTD 1188
Query: 367 IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 414
+ ++ DG+ + +A ++ ++V +G + + I SPD
Sbjct: 1189 LCFSPDGKMLISA--GGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPD 1234
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 325 AWHPNGVTFATGNQDKTCRIW------DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 378
AW P+ A G+ D T IW D + +A+++G+ ++ + +++DG Y+AT
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 379 AEPADFVHVYDV-KSGYEKE 397
V +++ +SG E E
Sbjct: 125 CSRDKSVWIWETDESGEEYE 144
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 326 WHPNGVTFATGNQDKTCRIW-DLRNLSESVAVLKGNLGAIRS 366
WHP+ A+ + D T RIW D + E VAVL G+ G + S
Sbjct: 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 316 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSD 372
GH F A++P + TFA+G D+T ++W L + + + G + + Y D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 412
YM TA + ++D ++ K G +S +SF+
Sbjct: 198 KPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFA 234
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 286 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRI 344
PD +I D+ + D T +A+L GH+ + SFA +HP +G++D T +I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 345 WD 346
W+
Sbjct: 255 WN 256
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 289 KLLIIVGDNPDGLLV-DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347
K IIVG + + V + TG+ + H D+ + A HP +G+ D T ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 348 RN 349
N
Sbjct: 127 EN 128
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 316 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSD 372
GH F A++P + TFA+G D+T ++W L + + + G + + Y D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 412
YM TA + ++D ++ K G +S +SF+
Sbjct: 198 KPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFA 234
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 286 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRI 344
PD +I D+ + D T +A+L GH+ + SFA +HP +G++D T +I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 345 WD 346
W+
Sbjct: 255 WN 256
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 289 KLLIIVGDNPDGLLV-DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347
K IIVG + + V + TG+ + H D+ + A HP +G+ D T ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 348 RN 349
N
Sbjct: 127 EN 128
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 390
ATG+ DKT +WDLRNL + + + I ++++ + + D +HV+D+
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 391 KSGYEKEQE 399
K G E+ E
Sbjct: 357 KIGEEQSTE 365
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 390
ATG+ DKT +WDLRNL + + + I ++++ + + D +HV+D+
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 391 KSGYEKEQE 399
K G E+ E
Sbjct: 355 KIGEEQSTE 363
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 390
ATG+ DKT +WDLRNL + + + I ++++ + + D +HV+D+
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 391 KSGYEKEQE 399
K G E+ E
Sbjct: 353 KIGEEQSTE 361
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 316 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSD 372
GH F A++P + TFA+G D+T ++W L + + + G + + Y D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 412
YM TA + ++D ++ K G +S +SF+
Sbjct: 198 KPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFA 234
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 286 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRI 344
PD +I D+ + D T +A+L GH+ + SFA +HP +G++D T +I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 345 WD 346
W+
Sbjct: 255 WN 256
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 289 KLLIIVGDNPDGLLV-DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347
K IIVG + + V + TG+ + H D+ + A HP +G+ D T ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 348 RN 349
N
Sbjct: 127 EN 128
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 286 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRI 344
PD +I D+ + D T +A+L GH+ + SFA +HP +G++D T +I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 345 WD 346
W+
Sbjct: 255 WN 256
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 316 GHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--TSD 372
GH F A++P + TFA+G D+T ++W L + + + G + + Y D
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 373 GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 412
YM TA + ++D ++ K G +S +SF+
Sbjct: 198 KPYMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFA 234
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 292 IIVGDNPDGLLV-DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 349
IIVG + + V + TG+ + H D+ + A HP +G+ D T ++W+ N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 292 IIVGDNPDGLLV-DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 350
+I G + + V DS+ K + L GH D + + +G +G+ D+T R+WD++
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGH-DGGVWALKYAHGGILVSGSTDRTVRVWDIKK- 192
Query: 351 SESVAVLKGNLGAIRSIRYTS--DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE--- 405
V +G+ +R + + +Y+ T + +HV+ + KE + GE
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL----PKESSVPDHGEEHD 248
Query: 406 ISGISFSPDTESLFIGV 422
+ +P+ F+GV
Sbjct: 249 YPLVFHTPEENPYFVGV 265
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 292 IIVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 349
I+V + D L+ D K + L GH D +++ + + + D T RIWDL N
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Query: 350 LSESVAVLKGNLGAIRSIRYTSDGRYMATAE 380
E L+G+ + +R + A A+
Sbjct: 342 -GELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 304 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 363
DS+ K + L GH D + + +G +G+ D+T R+WD++ V +G+
Sbjct: 148 DSINKKFLLQLSGH-DGGVWALKYAHGGILVSGSTDRTVRVWDIKK-GCCTHVFEGHNST 205
Query: 364 IRSIRYTS--DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE---ISGISFSPDTESL 418
+R + + +Y+ T + +HV+ + KE + GE + +P+
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKL----PKESSVPDHGEEHDYPLVFHTPEENPY 261
Query: 419 FIGV 422
F+GV
Sbjct: 262 FVGV 265
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 292 IIVGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 349
I+V + D L+ D K + L GH D +++ + + + D T RIWDL N
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Query: 350 LSESVAVLKGNLGAIRSIRYTSDGRYMATAE 380
E + L+G+ + +R + A A+
Sbjct: 342 -GELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 299 DGL--LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 356
DGL LVD TG + + GH F + PNG + G +D+T RIW N S +
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVI 262
Query: 357 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVY-DVKSGYEKEQEI 400
+ +I S+ S+G + + + V ++ KS + E EI
Sbjct: 263 TLPAI-SIWSVDCXSNGDIIVGSSD-NLVRIFSQEKSRWASEDEI 305
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 304 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---N 360
D TG I +L GH S S +GN D T +IWD++ + + L+G +
Sbjct: 305 DVETGNCIHTLTGHQ--SLTSGMELKDNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKH 361
Query: 361 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393
A+ +++ + ++ T+ V ++D+K+G
Sbjct: 362 QSAVTCLQFNKN--FVITSSDDGTVKLWDLKTG 392
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 344
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 404
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 181 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 238
Query: 405 EISGISFSPD 414
E+ ++FSP+
Sbjct: 239 EVFSLAFSPN 248
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 324 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 379
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 380 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 436
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 344
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 404
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 181 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 238
Query: 405 EISGISFSPD 414
E+ ++FSP+
Sbjct: 239 EVFSLAFSPN 248
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 324 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 379
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 380 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 436
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 344
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 404
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 175 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 232
Query: 405 EISGISFSPD 414
E+ ++FSP+
Sbjct: 233 EVFSLAFSPN 242
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 324 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 379
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 20 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 77
Query: 380 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 436
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 78 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 134
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 344
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 404
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 181 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 238
Query: 405 EISGISFSPD 414
E+ ++FSP+
Sbjct: 239 EVFSLAFSPN 248
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 324 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 379
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 380 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 436
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRI 344
+II G + V ++ G+ +A+L GH D+ PN VT + DK +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 404
W+L N + A G+ I ++ + DG +A+A + ++++ + + +
Sbjct: 181 WNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQD 238
Query: 405 EISGISFSPD 414
E+ ++FSP+
Sbjct: 239 EVFSLAFSPN 248
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 324 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 379
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 380 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 436
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 390
ATG+ DKT +WDLRNL + + + I + ++ + + D ++V+D+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 391 KSGYEKEQE 399
K G E+ E
Sbjct: 351 KIGEEQSAE 359
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 390
ATG+ DKT +WDLRNL + + + I + ++ + + D ++V+D+
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 391 KSGYEKEQE 399
K G E+ E
Sbjct: 351 KIGEEQSAE 359
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 292 IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN------GVTFATGNQDKTCRIW 345
II G + V ++ G+ +A+L GH D+ PN VT + DK + W
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 346 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV---KSGYEKEQEIDF 402
+L N + A G+ I ++ + DG +A+A + ++++ K+ Y + +
Sbjct: 182 NL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV 240
Query: 403 FGEISGISFSPD 414
F ++FSP+
Sbjct: 241 F----SLAFSPN 248
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 324 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV----LKGNLGAIRSIRYTSDGRYMATA 379
SA PN + ++DKT W L + V KG+ ++ T+DG Y +A
Sbjct: 26 SAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83
Query: 380 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRC 436
+ ++DV +G ++ + ++ + + G D+T G+C
Sbjct: 84 SWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC 140
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDV- 390
ATG+ DKT +WDLRNL + + + I ++++ + + D ++V+D+
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Query: 391 KSGYEKEQE 399
K G E+ E
Sbjct: 349 KIGEEQSPE 357
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 16/159 (10%)
Query: 287 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346
+G L + + + L D K + ++ H + +W N ++G++ D
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 226
Query: 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--- 403
+R VA L G+ + +R+ DGR++A+ + V+V+ G + F
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 286
Query: 404 -GEISGISFSP----------DTESLFIGVWDRTYGSLL 431
G + +++ P T I +W+ G+ L
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 307 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345
T +A L GH + P+G T A+ D+T R+W
Sbjct: 364 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 16/159 (10%)
Query: 287 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346
+G L + + + L D K + ++ H + +W N ++G++ D
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 215
Query: 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--- 403
+R VA L G+ + +R+ DGR++A+ + V+V+ G + F
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275
Query: 404 -GEISGISFSP----------DTESLFIGVWDRTYGSLL 431
G + +++ P T I +W+ G+ L
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 307 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345
T +A L GH + P+G T A+ D+T R+W
Sbjct: 353 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 311 IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 370
I +L GH AW +G+ A+G D +IWD R+ N A++++ +
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN-AAVKAVAWC 268
Query: 371 S-DGRYMATAEPA--DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 419
+AT +H ++ +G + +D +++ + +SP ++ +
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDAGSQVTSLIWSPHSKEIM 319
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 285 SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344
S DG L + N + D + + ++ GH +W N ++G++
Sbjct: 143 SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHH 200
Query: 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG 404
D+R + + L+G+ + + + SDG +A+ + V ++D +S K + +
Sbjct: 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA 260
Query: 405 EISGISFSPDTESLF 419
+ +++ P +L
Sbjct: 261 AVKAVAWCPWQSNLL 275
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 302 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 361
L D TG T GH + A+ + +G++DKT ++W+ + + + +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 148
Query: 362 GAIRSIRYT--SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 414
+ +R++ S + + V V+++ + K I G ++ ++ SPD
Sbjct: 149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 203
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 316 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 375
GH + P+G A+G +D +WDL N + + L G G I + S RY
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL-NEGKHLYTLDG--GDIINALCFSPNRY 246
Query: 376 MATAEPADFVHVYDVKSGY---EKEQEIDFFG------EISGISFSPDTESLFIG----- 421
A + ++D++ E +QE+ + + +++S D ++LF G
Sbjct: 247 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 306
Query: 422 --VWDRTYGS 429
VW T G+
Sbjct: 307 VRVWQVTIGT 316
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 335 TGNQDKTCRIWDLR----NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 390
+ ++DKT +W L N L+G+ + + +SDG++ + + ++D+
Sbjct: 33 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
Query: 391 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 437
+G + + ++ ++FS D + G D+T G C+
Sbjct: 93 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 139
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 302 LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL 361
L D TG T GH + A+ + +G++DKT ++W+ + + + +
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
Query: 362 GAIRSIRYT--SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 414
+ +R++ S + + V V+++ + K I G ++ ++ SPD
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 226
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 316 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 375
GH + P+G A+G +D +WDL N + + L G G I + S RY
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL-NEGKHLYTLDG--GDIINALCFSPNRY 269
Query: 376 MATAEPADFVHVYDVKSGY---EKEQEIDFFG------EISGISFSPDTESLFIG----- 421
A + ++D++ E +QE+ + + +++S D ++LF G
Sbjct: 270 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329
Query: 422 --VWDRTYGS 429
VW T G+
Sbjct: 330 VRVWQVTIGT 339
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 335 TGNQDKTCRIWDLR----NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 390
+ ++DKT +W L N L+G+ + + +SDG++ + + ++D+
Sbjct: 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
Query: 391 KSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 437
+G + + ++ ++FS D + G D+T G C+
Sbjct: 116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162
>pdb|3ZWU|A Chain A, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|3ZWU|B Chain B, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|4A9V|A Chain A, Pseudomonas Fluorescens Phox
pdb|4A9X|A Chain A, Pseudomonas Fluorescens Phox In Complex With The Substrate
Analogue Appcp
Length = 592
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 17/18 (94%)
Query: 405 EISGISFSPDTESLFIGV 422
E++GISFSPD ++LF+G+
Sbjct: 532 EVTGISFSPDQKTLFVGI 549
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 16/159 (10%)
Query: 287 DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346
+G L + + + L D K + ++ H + +W N ++G++ D
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135
Query: 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--- 403
+R VA L G+ + +R+ DGR++A+ + V+V+ G + F
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195
Query: 404 -GEISGISFSP----------DTESLFIGVWDRTYGSLL 431
G + +++ P T I +W+ G+ L
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 313 SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372
+L GH F A + + DKT R+WDLR + G+ + S+ ++ D
Sbjct: 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPD 129
Query: 373 GRYMATAEPADFVHVYDVK-----SGYEKEQEIDFFGEISGISFSPDTES 417
R + +A + ++++ S EKE D+ +S + +SP +S
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDW---VSCVRYSPIMKS 176
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 328 PNGVTFATGNQDKTCRIWDLRNLS 351
PNG ATG +DK IWD+ NL+
Sbjct: 223 PNGKYIATGGKDKKLLIWDILNLT 246
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 327 HPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 386
P FA+ D ++W+ + K + + + + +G+Y+AT +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 387 VYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 421
++D+ + ++E D I+ I+F+P + + +G
Sbjct: 239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG 273
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 295 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-TFATGNQDKTCRIWDLRNLSES 353
G+ P +L S+TG + C +D HPN ATG QD IWD+R +
Sbjct: 223 GNEPSQIL--SLTGDRVPLHC--VDR------HPNQQHVVATGGQDGMLSIWDVRQGTMP 272
Query: 354 VAVLKGNLGAIRSIRY 369
V++LK + + + +
Sbjct: 273 VSLLKAHEAEMWEVHF 288
>pdb|1HZO|A Chain A, Structure Of Class A Cephalosporinase From Proteus
Vulgaris K1
pdb|1HZO|B Chain B, Structure Of Class A Cephalosporinase From Proteus
Vulgaris K1
Length = 271
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 161 SSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA---VKDKLLVAGGFQGELICKHLD 217
+S S+V+ V+ + SEK G L + T + +A + +K L G EL L
Sbjct: 45 ASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLAELSAATLQ 104
Query: 218 RPGVSFCSRTTYDDNAITNAVEIY-GSPSGAVHFTASNNDCGVR 260
Y DN N + Y G P+ F S ND R
Sbjct: 105 -----------YSDNTAMNKILDYLGGPAKVTQFARSINDVTYR 137
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 325 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 384
AW +G + TG ++ R+W+ + VL + I S+++ DG ++ + + +
Sbjct: 115 AWSHDGNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV 172
Query: 385 VHVYDVKSG 393
+++V SG
Sbjct: 173 TILWNVISG 181
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 264 MGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 323
M +L+ H R P+ + +G LL + + S+ G+ + +L GH
Sbjct: 23 MKAIKLTGHER---PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT----G 75
Query: 324 SAWHPNGVTF----ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 376
+ W + F TG+ D + ++WD+ N + VA K + ++ + ++ G Y
Sbjct: 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSN-GQCVATWKSPV-PVKRVEFSPCGNYF 130
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 19/174 (10%)
Query: 185 EGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSP 244
EG V+ + K K ++AG G+ I K+ + + +I++ + SP
Sbjct: 173 EGLDAATVAGWSTKGKYIIAGHKDGK-ISKYDVSNNYEYVDSIDLHEKSISD---MQFSP 228
Query: 245 SGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG--DNPDGLL 302
+F S+ D D+ Q+ K + P+N + +P + +I+ G + D
Sbjct: 229 D-LTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTT 287
Query: 303 VDSMTGK------------TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344
+ GK I + GH A P G ++A+G +D R+
Sbjct: 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 304 DSMTGKTIASLCGHLDFSFASAWHPNGVT---FATGNQDKTCRIWDLRN 349
D+ T ++L GH D+ AW P + A+ +QD+TC IW N
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 314 LCGHLDFSFASA-----WHPNGVTFATGNQDKTCRI 344
+C H+ S WHPN V A G+ D CRI
Sbjct: 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 314 LCGHLDFSFASA-----WHPNGVTFATGNQDKTCRI 344
+C H+ S WHPN V A G+ D CRI
Sbjct: 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
>pdb|3DC7|A Chain A, Crystal Structure Of The Protein Q88sr8 From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr109.
pdb|3DC7|B Chain B, Crystal Structure Of The Protein Q88sr8 From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr109.
pdb|3DC7|C Chain C, Crystal Structure Of The Protein Q88sr8 From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr109
Length = 232
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 316 GHLDFSFASAWHPNGVTFATG-----NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 370
GH+ F AW + +T G D WD+ S+++ + +G+ RY
Sbjct: 17 GHVSFK-RPAWLGDSITANNGLATVHYHDILAADWDVER-SDNLGISGSTIGS----RYD 70
Query: 371 SDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 411
+ RY A E ADF+ V+ + Y ++Q + +G+ +F
Sbjct: 71 AXAVRYQAIPEDADFIAVFGGVNDYGRDQPLGQYGDCDXTTF 112
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 304 DSMTGKTIASLCGHLDFSFASAWHPNGVT---FATGNQDKTCRIWDLRN 349
D+ T ++L GH D+ AW P + A+ +QD+TC IW N
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 326 WHPNG---VTFATG-NQDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAE 380
WHP V ATG + D + IWDLRN + + L +G+ I S+ + ++ +
Sbjct: 222 WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS 281
Query: 381 PAD-FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 419
D V +++ +S + Q F+P+ LF
Sbjct: 282 GRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLF 321
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 304 DSMTGKTIASLCGHLDFSFASAWHPNGVT---FATGNQDKTCRIWDLRN 349
D+ T ++L GH D+ AW P + A+ +QD+TC IW N
Sbjct: 192 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 304 DSMTGKTIASLCGHLDFSFASAWHPNGVT---FATGNQDKTCRIWDLRN 349
D+ T ++L GH D+ AW P + A+ +QD+TC IW N
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,503,519
Number of Sequences: 62578
Number of extensions: 570384
Number of successful extensions: 1659
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 264
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)