Query 013282
Match_columns 446
No_of_seqs 645 out of 3808
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:16:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 8.1E-43 1.8E-47 311.1 20.5 265 141-430 187-457 (459)
2 KOG0286 G-protein beta subunit 100.0 3.3E-39 7.1E-44 275.5 32.3 267 141-430 67-342 (343)
3 KOG0272 U4/U6 small nuclear ri 100.0 5.7E-41 1.2E-45 299.3 18.6 235 191-431 177-416 (459)
4 KOG0271 Notchless-like WD40 re 100.0 6.6E-40 1.4E-44 289.0 23.7 281 125-430 151-478 (480)
5 KOG0271 Notchless-like WD40 re 100.0 1.3E-39 2.8E-44 287.1 24.2 274 140-435 126-441 (480)
6 KOG0291 WD40-repeat-containing 100.0 7.1E-37 1.5E-41 290.6 32.6 300 122-428 266-607 (893)
7 KOG0263 Transcription initiati 100.0 6.7E-37 1.5E-41 293.2 22.1 237 191-431 380-647 (707)
8 KOG0296 Angio-associated migra 100.0 2.9E-35 6.3E-40 258.4 29.6 282 113-430 56-395 (399)
9 KOG0315 G-protein beta subunit 100.0 6.8E-35 1.5E-39 243.8 28.0 254 136-412 46-309 (311)
10 KOG0315 G-protein beta subunit 100.0 1.7E-34 3.7E-39 241.4 28.2 259 150-431 19-286 (311)
11 KOG0279 G protein beta subunit 100.0 3.5E-34 7.6E-39 243.3 30.2 283 117-431 11-311 (315)
12 KOG0263 Transcription initiati 100.0 1.4E-34 3.1E-39 277.3 30.0 268 111-394 368-652 (707)
13 KOG0286 G-protein beta subunit 100.0 8.6E-34 1.9E-38 242.4 29.7 236 191-434 57-304 (343)
14 KOG0279 G protein beta subunit 100.0 6.4E-34 1.4E-38 241.8 27.6 234 191-430 17-259 (315)
15 KOG0284 Polyadenylation factor 100.0 1.3E-35 2.9E-40 263.9 18.0 268 142-434 109-381 (464)
16 KOG0295 WD40 repeat-containing 100.0 3.8E-34 8.2E-39 251.3 24.7 280 120-431 107-404 (406)
17 KOG0273 Beta-transducin family 100.0 3.2E-33 7E-38 252.9 26.0 234 188-430 234-479 (524)
18 KOG0265 U5 snRNP-specific prot 100.0 7.1E-33 1.5E-37 237.7 26.3 281 117-427 43-332 (338)
19 KOG0273 Beta-transducin family 100.0 6.2E-32 1.4E-36 244.6 29.7 269 134-430 239-520 (524)
20 KOG0319 WD40-repeat-containing 100.0 1E-32 2.2E-37 262.1 24.2 237 191-430 367-616 (775)
21 KOG0282 mRNA splicing factor [ 100.0 1.2E-33 2.7E-38 256.6 16.2 235 191-430 216-502 (503)
22 cd00200 WD40 WD40 domain, foun 100.0 2E-30 4.3E-35 239.1 35.8 281 117-430 5-288 (289)
23 KOG0284 Polyadenylation factor 100.0 1.3E-33 2.8E-38 251.3 13.2 236 191-433 98-337 (464)
24 KOG0266 WD40 repeat-containing 100.0 5.1E-31 1.1E-35 258.4 31.3 268 141-430 171-451 (456)
25 KOG0276 Vesicle coat complex C 100.0 2.1E-31 4.6E-36 248.6 24.9 275 120-427 12-293 (794)
26 KOG0285 Pleiotropic regulator 100.0 1.5E-31 3.2E-36 234.5 22.3 242 191-442 153-397 (460)
27 KOG0266 WD40 repeat-containing 100.0 2.1E-30 4.5E-35 254.2 29.5 236 190-430 160-406 (456)
28 KOG0277 Peroxisomal targeting 100.0 5E-31 1.1E-35 221.3 21.0 235 191-430 62-306 (311)
29 KOG0285 Pleiotropic regulator 100.0 3.5E-30 7.6E-35 225.8 25.5 260 148-434 170-440 (460)
30 PLN00181 protein SPA1-RELATED; 100.0 5E-29 1.1E-33 261.9 38.4 234 191-430 534-790 (793)
31 KOG0295 WD40 repeat-containing 100.0 8.5E-31 1.8E-35 230.3 19.8 234 191-431 110-362 (406)
32 KOG0306 WD40-repeat-containing 100.0 5.8E-30 1.3E-34 243.7 27.0 274 133-433 376-664 (888)
33 KOG0281 Beta-TrCP (transducin 100.0 2E-31 4.3E-36 232.8 14.0 257 140-431 206-475 (499)
34 KOG0291 WD40-repeat-containing 100.0 8.1E-29 1.7E-33 236.0 31.4 234 190-430 308-547 (893)
35 KOG0313 Microtubule binding pr 100.0 2.5E-29 5.5E-34 222.2 25.6 281 125-430 99-415 (423)
36 KOG0310 Conserved WD40 repeat- 100.0 2E-29 4.4E-34 229.6 25.5 231 191-429 70-305 (487)
37 KOG0281 Beta-TrCP (transducin 100.0 1.8E-31 3.8E-36 233.1 10.4 224 191-431 199-426 (499)
38 KOG0276 Vesicle coat complex C 100.0 1.2E-29 2.5E-34 237.0 22.9 235 191-432 15-256 (794)
39 PLN00181 protein SPA1-RELATED; 100.0 1.3E-28 2.9E-33 258.7 33.8 236 191-431 485-736 (793)
40 KOG1407 WD40 repeat protein [F 100.0 3.2E-29 7E-34 211.3 23.0 232 191-427 22-296 (313)
41 PTZ00421 coronin; Provisional 100.0 5.6E-28 1.2E-32 236.3 35.0 222 191-414 77-314 (493)
42 KOG0318 WD40 repeat stress pro 100.0 8.6E-28 1.9E-32 220.6 33.0 234 191-430 149-557 (603)
43 KOG0643 Translation initiation 100.0 1.1E-28 2.3E-33 208.7 24.4 234 191-430 12-314 (327)
44 cd00200 WD40 WD40 domain, foun 100.0 7.6E-28 1.6E-32 221.8 31.9 233 191-430 11-246 (289)
45 KOG0318 WD40 repeat stress pro 100.0 1.3E-27 2.8E-32 219.4 32.2 231 191-431 105-348 (603)
46 KOG0299 U3 snoRNP-associated p 100.0 3.8E-28 8.2E-33 219.7 27.3 304 114-439 135-462 (479)
47 KOG0265 U5 snRNP-specific prot 100.0 2.8E-28 6E-33 209.5 24.9 233 191-430 49-293 (338)
48 KOG0305 Anaphase promoting com 100.0 3.4E-28 7.5E-33 229.7 26.6 275 131-434 178-462 (484)
49 KOG0645 WD40 repeat protein [G 100.0 2.5E-27 5.4E-32 201.0 29.0 234 191-433 16-261 (312)
50 KOG0645 WD40 repeat protein [G 100.0 5.7E-27 1.2E-31 198.7 30.8 285 115-431 8-309 (312)
51 KOG0316 Conserved WD40 repeat- 100.0 1.6E-28 3.5E-33 204.0 20.5 229 191-430 19-254 (307)
52 PTZ00420 coronin; Provisional 100.0 6.9E-27 1.5E-31 229.7 34.9 221 191-414 76-317 (568)
53 PTZ00421 coronin; Provisional 100.0 4.6E-27 9.9E-32 229.9 31.6 236 191-430 24-287 (493)
54 KOG0319 WD40-repeat-containing 100.0 7.2E-28 1.6E-32 229.3 24.9 264 141-430 293-574 (775)
55 KOG0772 Uncharacterized conser 100.0 1.1E-27 2.4E-32 219.3 25.2 276 143-433 181-487 (641)
56 KOG0274 Cdc4 and related F-box 100.0 1.9E-27 4.2E-32 232.8 28.7 256 142-430 219-479 (537)
57 KOG0292 Vesicle coat complex C 100.0 2.5E-28 5.4E-33 236.1 21.4 234 191-430 11-277 (1202)
58 KOG0316 Conserved WD40 repeat- 100.0 5.6E-27 1.2E-31 194.9 24.8 255 141-424 29-291 (307)
59 KOG0292 Vesicle coat complex C 100.0 1.8E-27 3.9E-32 230.2 25.1 274 120-426 8-314 (1202)
60 KOG0640 mRNA cleavage stimulat 100.0 1.1E-27 2.3E-32 206.7 21.0 206 191-400 114-344 (430)
61 KOG0282 mRNA splicing factor [ 100.0 7.3E-28 1.6E-32 219.1 19.5 250 109-389 202-503 (503)
62 KOG0288 WD40 repeat protein Ti 100.0 4.3E-28 9.3E-33 216.5 17.4 267 138-430 183-458 (459)
63 KOG0289 mRNA splicing factor [ 100.0 4.8E-27 1E-31 211.0 23.2 236 184-426 214-455 (506)
64 KOG1446 Histone H3 (Lys4) meth 100.0 1.6E-25 3.5E-30 194.3 30.9 271 120-422 13-294 (311)
65 PTZ00420 coronin; Provisional 100.0 9.6E-26 2.1E-30 221.6 33.0 220 205-431 50-291 (568)
66 KOG0277 Peroxisomal targeting 100.0 6.1E-27 1.3E-31 196.8 20.8 219 208-430 37-262 (311)
67 KOG0264 Nucleosome remodeling 100.0 5.5E-27 1.2E-31 212.2 21.7 230 198-429 136-399 (422)
68 KOG0293 WD40 repeat-containing 100.0 5.9E-27 1.3E-31 209.1 21.5 265 143-431 238-511 (519)
69 KOG0269 WD40 repeat-containing 100.0 2.7E-27 5.9E-32 226.4 20.1 228 198-428 99-335 (839)
70 KOG0275 Conserved WD40 repeat- 100.0 4E-28 8.6E-33 210.4 12.4 235 192-430 218-506 (508)
71 KOG0313 Microtubule binding pr 100.0 1.8E-26 3.8E-31 204.2 23.0 233 191-430 107-373 (423)
72 KOG0308 Conserved WD40 repeat- 100.0 1.7E-27 3.7E-32 223.7 17.2 227 198-428 36-280 (735)
73 KOG0289 mRNA splicing factor [ 100.0 5.1E-26 1.1E-30 204.4 25.2 260 142-426 232-499 (506)
74 KOG4283 Transcription-coupled 100.0 2E-26 4.2E-31 197.6 21.0 202 191-394 45-279 (397)
75 KOG0310 Conserved WD40 repeat- 99.9 1.2E-26 2.6E-31 211.6 19.9 231 191-431 28-266 (487)
76 KOG1332 Vesicle coat complex C 99.9 2.3E-26 4.9E-31 192.4 18.9 239 196-435 20-288 (299)
77 KOG0283 WD40 repeat-containing 99.9 2.7E-26 5.8E-31 222.4 22.3 234 191-430 269-573 (712)
78 KOG0294 WD40 repeat-containing 99.9 1.1E-25 2.3E-30 194.9 23.2 232 191-431 45-279 (362)
79 KOG0308 Conserved WD40 repeat- 99.9 2.1E-26 4.5E-31 216.4 18.5 236 191-430 75-324 (735)
80 KOG0278 Serine/threonine kinas 99.9 1.2E-26 2.7E-31 194.5 14.8 220 148-394 78-300 (334)
81 KOG0973 Histone transcription 99.9 3.7E-25 8.1E-30 219.8 27.3 268 150-430 36-352 (942)
82 KOG1036 Mitotic spindle checkp 99.9 8.2E-25 1.8E-29 189.1 25.7 254 142-423 26-294 (323)
83 KOG0278 Serine/threonine kinas 99.9 9.7E-27 2.1E-31 195.1 13.3 235 191-432 16-296 (334)
84 KOG0296 Angio-associated migra 99.9 8.5E-25 1.8E-29 192.8 26.1 244 191-443 66-373 (399)
85 KOG1446 Histone H3 (Lys4) meth 99.9 2.9E-24 6.4E-29 186.5 28.9 232 191-430 16-259 (311)
86 KOG0268 Sof1-like rRNA process 99.9 2E-26 4.3E-31 202.7 15.3 279 118-432 63-344 (433)
87 KOG0306 WD40-repeat-containing 99.9 8E-25 1.7E-29 208.9 27.2 247 175-430 359-619 (888)
88 KOG0274 Cdc4 and related F-box 99.9 2E-25 4.3E-30 218.7 23.6 230 188-430 207-438 (537)
89 KOG0641 WD40 repeat protein [G 99.9 4.3E-24 9.4E-29 176.7 26.5 234 191-429 34-299 (350)
90 KOG0772 Uncharacterized conser 99.9 2.9E-25 6.4E-30 203.5 20.7 230 191-423 169-429 (641)
91 KOG0264 Nucleosome remodeling 99.9 7.8E-25 1.7E-29 198.3 22.0 199 192-392 180-405 (422)
92 KOG0647 mRNA export protein (c 99.9 1.7E-24 3.6E-29 186.5 22.3 234 191-428 29-319 (347)
93 KOG0267 Microtubule severing p 99.9 1.9E-26 4.2E-31 219.0 10.3 226 192-424 31-259 (825)
94 KOG2055 WD40 repeat protein [G 99.9 1.8E-23 4E-28 189.5 28.5 282 120-430 212-509 (514)
95 KOG1407 WD40 repeat protein [F 99.9 5.3E-25 1.1E-29 185.9 16.2 198 227-428 15-256 (313)
96 KOG0646 WD40 repeat protein [G 99.9 3.9E-24 8.5E-29 194.2 22.7 224 190-420 82-336 (476)
97 KOG0270 WD40 repeat-containing 99.9 1.5E-23 3.3E-28 189.3 25.8 225 198-425 191-441 (463)
98 KOG0641 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 167.5 29.0 238 191-430 91-346 (350)
99 KOG0275 Conserved WD40 repeat- 99.9 1.1E-25 2.4E-30 195.3 10.6 188 230-421 211-411 (508)
100 KOG0639 Transducin-like enhanc 99.9 2.1E-24 4.5E-29 197.3 19.4 268 140-427 429-698 (705)
101 KOG0643 Translation initiation 99.9 4.2E-23 9E-28 175.0 25.6 221 149-393 30-319 (327)
102 KOG0293 WD40 repeat-containing 99.9 2.3E-24 4.9E-29 192.7 18.1 234 135-392 274-514 (519)
103 KOG0301 Phospholipase A2-activ 99.9 1.5E-23 3.3E-28 198.7 24.6 256 144-433 28-288 (745)
104 KOG0300 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 182.6 21.1 260 148-431 167-474 (481)
105 KOG1274 WD40 repeat protein [G 99.9 6.3E-23 1.4E-27 200.2 28.1 262 140-430 24-297 (933)
106 KOG0973 Histone transcription 99.9 1.9E-23 4.1E-28 207.8 24.8 238 191-432 15-311 (942)
107 KOG0305 Anaphase promoting com 99.9 4.3E-23 9.3E-28 195.3 25.5 260 110-393 195-463 (484)
108 KOG2096 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 179.9 21.9 180 245-427 197-396 (420)
109 KOG1332 Vesicle coat complex C 99.9 1.7E-23 3.6E-28 175.3 19.0 233 141-391 23-286 (299)
110 KOG0300 WD40 repeat-containing 99.9 1.9E-23 4E-28 181.1 19.3 231 191-428 150-423 (481)
111 KOG0283 WD40 repeat-containing 99.9 8.1E-23 1.8E-27 198.4 25.9 195 190-392 370-577 (712)
112 KOG1539 WD repeat protein [Gen 99.9 8.3E-22 1.8E-26 190.5 31.6 286 108-425 189-639 (910)
113 KOG0268 Sof1-like rRNA process 99.9 2.4E-24 5.1E-29 189.7 12.8 227 191-430 68-299 (433)
114 KOG0288 WD40 repeat protein Ti 99.9 2.7E-24 5.8E-29 192.4 13.1 235 191-434 177-418 (459)
115 KOG0294 WD40 repeat-containing 99.9 3.1E-22 6.7E-27 173.5 24.9 261 113-412 35-306 (362)
116 KOG2048 WD40 repeat protein [G 99.9 3.3E-22 7.1E-27 189.3 27.2 234 191-431 27-273 (691)
117 KOG1408 WD40 repeat protein [F 99.9 5.1E-23 1.1E-27 195.4 20.4 236 191-430 461-710 (1080)
118 KOG0301 Phospholipase A2-activ 99.9 4.4E-23 9.5E-28 195.6 19.7 228 191-430 16-246 (745)
119 KOG0639 Transducin-like enhanc 99.9 2.4E-23 5.3E-28 190.4 16.9 235 189-430 419-660 (705)
120 KOG1274 WD40 repeat protein [G 99.9 3E-22 6.5E-27 195.5 25.1 232 192-431 16-260 (933)
121 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.4E-21 2E-25 177.0 34.6 254 148-429 8-275 (300)
122 KOG0640 mRNA cleavage stimulat 99.9 3E-23 6.5E-28 179.3 15.6 205 223-431 103-333 (430)
123 KOG2445 Nuclear pore complex c 99.9 1.2E-21 2.5E-26 169.5 25.0 238 191-430 15-315 (361)
124 KOG0269 WD40 repeat-containing 99.9 3.7E-23 8E-28 198.3 17.3 229 192-421 42-282 (839)
125 KOG2106 Uncharacterized conser 99.9 8.5E-21 1.9E-25 174.0 31.6 272 121-427 200-515 (626)
126 KOG0299 U3 snoRNP-associated p 99.9 2.6E-22 5.6E-27 182.1 21.1 235 191-431 144-408 (479)
127 KOG2919 Guanine nucleotide-bin 99.9 4.2E-22 9.2E-27 173.2 21.4 226 198-425 122-362 (406)
128 KOG0267 Microtubule severing p 99.9 2.4E-24 5.2E-29 204.9 7.0 214 204-430 9-223 (825)
129 KOG1539 WD repeat protein [Gen 99.9 8.7E-21 1.9E-25 183.5 31.3 300 111-430 94-603 (910)
130 KOG1036 Mitotic spindle checkp 99.9 1.2E-21 2.6E-26 169.6 22.2 236 191-437 15-266 (323)
131 KOG0647 mRNA export protein (c 99.9 5.4E-22 1.2E-26 171.1 19.9 200 227-430 22-278 (347)
132 KOG0307 Vesicle coat complex C 99.9 4.5E-23 9.8E-28 206.0 14.2 240 191-432 66-326 (1049)
133 KOG0270 WD40 repeat-containing 99.9 2.6E-21 5.6E-26 175.0 21.5 201 191-396 245-454 (463)
134 KOG0302 Ribosome Assembly prot 99.9 2E-21 4.4E-26 172.2 20.4 233 191-425 156-431 (440)
135 KOG1408 WD40 repeat protein [F 99.9 7.4E-21 1.6E-25 180.9 25.4 236 192-429 327-667 (1080)
136 KOG0646 WD40 repeat protein [G 99.9 2.1E-21 4.6E-26 176.6 20.0 223 149-391 101-350 (476)
137 KOG0302 Ribosome Assembly prot 99.9 2.2E-21 4.8E-26 171.9 19.4 195 192-389 214-436 (440)
138 KOG4378 Nuclear protein COP1 [ 99.9 2.4E-21 5.3E-26 177.2 20.3 210 198-415 90-305 (673)
139 KOG2106 Uncharacterized conser 99.9 9.7E-20 2.1E-24 167.1 30.4 299 117-427 100-471 (626)
140 KOG4328 WD40 protein [Function 99.9 2.9E-21 6.3E-26 175.2 20.3 231 191-423 188-440 (498)
141 KOG2055 WD40 repeat protein [G 99.9 2.3E-21 5E-26 176.0 19.6 227 191-423 215-455 (514)
142 KOG1273 WD40 repeat protein [G 99.9 8.1E-21 1.8E-25 164.7 21.0 238 192-438 26-292 (405)
143 KOG4283 Transcription-coupled 99.9 6.5E-21 1.4E-25 163.9 18.3 200 227-430 38-273 (397)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-18 3.1E-23 162.2 35.8 252 135-413 35-300 (300)
145 KOG2048 WD40 repeat protein [G 99.9 3.4E-19 7.3E-24 169.1 29.0 284 110-429 16-315 (691)
146 KOG1034 Transcriptional repres 99.8 8.9E-20 1.9E-24 159.2 18.9 227 199-432 105-382 (385)
147 KOG0650 WD40 repeat nucleolar 99.8 2.5E-19 5.5E-24 167.6 20.9 302 111-430 390-732 (733)
148 KOG2445 Nuclear pore complex c 99.8 1E-18 2.2E-23 151.4 23.2 244 124-391 16-318 (361)
149 KOG2096 WD40 repeat protein [G 99.8 4.1E-19 8.8E-24 154.5 19.5 193 226-422 80-350 (420)
150 KOG1009 Chromatin assembly com 99.8 6E-19 1.3E-23 158.1 21.0 154 191-347 15-194 (434)
151 KOG0322 G-protein beta subunit 99.8 2.6E-19 5.6E-24 151.9 17.3 253 111-390 4-322 (323)
152 KOG1063 RNA polymerase II elon 99.8 1.1E-18 2.4E-23 165.9 23.5 307 112-444 45-412 (764)
153 KOG4378 Nuclear protein COP1 [ 99.8 3.9E-19 8.4E-24 162.9 18.4 203 148-373 98-305 (673)
154 KOG0303 Actin-binding protein 99.8 1.1E-18 2.3E-23 155.9 20.6 231 209-443 57-304 (472)
155 KOG0307 Vesicle coat complex C 99.8 6.1E-20 1.3E-24 183.8 13.5 244 132-394 66-330 (1049)
156 KOG1188 WD40 repeat protein [G 99.8 5.4E-19 1.2E-23 155.2 15.5 190 200-393 41-244 (376)
157 KOG2110 Uncharacterized conser 99.8 3E-17 6.6E-22 145.7 26.5 226 191-429 7-244 (391)
158 KOG4328 WD40 protein [Function 99.8 7.9E-18 1.7E-22 153.1 23.2 277 118-422 183-483 (498)
159 KOG0303 Actin-binding protein 99.8 1.3E-17 2.8E-22 149.1 24.0 221 191-414 83-320 (472)
160 KOG1007 WD repeat protein TSSC 99.8 1.1E-18 2.4E-23 149.8 16.6 225 199-427 26-283 (370)
161 KOG1007 WD repeat protein TSSC 99.8 2.6E-18 5.7E-23 147.6 18.4 232 191-427 65-355 (370)
162 KOG1273 WD40 repeat protein [G 99.8 2.9E-18 6.2E-23 149.0 18.5 189 235-430 26-223 (405)
163 KOG0321 WD40 repeat-containing 99.8 9.1E-18 2E-22 158.4 21.8 239 191-432 102-390 (720)
164 KOG1524 WD40 repeat-containing 99.8 3.1E-18 6.8E-23 158.4 17.9 260 136-427 20-280 (737)
165 KOG1517 Guanine nucleotide bin 99.8 2.1E-17 4.5E-22 164.0 24.4 261 151-429 1086-1377(1387)
166 KOG0650 WD40 repeat nucleolar 99.8 8.1E-18 1.8E-22 157.6 20.3 233 190-430 401-677 (733)
167 KOG0649 WD40 repeat protein [G 99.8 2.8E-17 6.1E-22 138.0 21.2 216 194-422 17-263 (325)
168 KOG1587 Cytoplasmic dynein int 99.8 5.8E-17 1.3E-21 158.1 26.6 266 145-430 216-513 (555)
169 KOG1538 Uncharacterized conser 99.8 2.3E-17 4.9E-22 156.3 22.6 265 133-429 15-289 (1081)
170 PRK11028 6-phosphogluconolacto 99.8 4.9E-16 1.1E-20 147.4 32.3 233 194-430 41-301 (330)
171 KOG0290 Conserved WD40 repeat- 99.8 3.5E-17 7.6E-22 140.8 21.7 229 191-423 98-356 (364)
172 KOG0321 WD40 repeat-containing 99.8 8.7E-18 1.9E-22 158.5 18.8 251 126-393 95-393 (720)
173 KOG1063 RNA polymerase II elon 99.8 3.1E-17 6.8E-22 156.1 22.7 280 138-434 275-649 (764)
174 COG2319 FOG: WD40 repeat [Gene 99.8 5.8E-16 1.3E-20 150.6 32.4 235 191-430 67-311 (466)
175 KOG0322 G-protein beta subunit 99.8 4.2E-18 9.1E-23 144.6 13.5 235 191-431 16-321 (323)
176 KOG1445 Tumor-specific antigen 99.8 3.3E-18 7.1E-23 161.1 14.0 199 194-393 586-800 (1012)
177 COG2319 FOG: WD40 repeat [Gene 99.8 3.6E-15 7.8E-20 145.0 36.3 258 149-428 85-354 (466)
178 KOG0642 Cell-cycle nuclear pro 99.8 1.4E-17 3E-22 155.2 16.6 233 150-403 315-573 (577)
179 KOG2919 Guanine nucleotide-bin 99.8 2.5E-17 5.4E-22 143.7 16.2 218 150-383 132-362 (406)
180 KOG0771 Prolactin regulatory e 99.7 3.2E-17 6.8E-22 148.1 15.2 188 241-430 151-351 (398)
181 KOG0290 Conserved WD40 repeat- 99.7 2.4E-16 5.1E-21 135.8 19.5 225 144-382 114-357 (364)
182 PRK01742 tolB translocation pr 99.7 5.1E-16 1.1E-20 152.0 24.5 212 208-432 183-400 (429)
183 KOG1445 Tumor-specific antigen 99.7 1.4E-17 3E-22 156.9 12.4 176 253-429 599-790 (1012)
184 KOG1523 Actin-related protein 99.7 3.6E-16 7.8E-21 136.5 19.2 222 191-415 12-261 (361)
185 PRK01742 tolB translocation pr 99.7 8.4E-16 1.8E-20 150.5 24.0 210 192-414 206-426 (429)
186 KOG0649 WD40 repeat protein [G 99.7 8.9E-15 1.9E-19 123.1 26.3 225 191-427 64-310 (325)
187 KOG3881 Uncharacterized conser 99.7 4.9E-16 1.1E-20 139.0 19.4 222 190-414 106-342 (412)
188 KOG1009 Chromatin assembly com 99.7 7.7E-17 1.7E-21 144.7 14.2 189 230-421 11-248 (434)
189 KOG4227 WD40 repeat protein [G 99.7 6.5E-16 1.4E-20 138.1 20.0 240 191-434 58-388 (609)
190 KOG1034 Transcriptional repres 99.7 4.4E-16 9.6E-21 136.3 16.2 230 198-430 54-334 (385)
191 KOG1272 WD40-repeat-containing 99.7 4.1E-17 9E-22 148.7 9.8 225 193-430 133-359 (545)
192 KOG2110 Uncharacterized conser 99.7 1.3E-14 2.8E-19 129.2 24.6 191 191-392 48-249 (391)
193 PRK11028 6-phosphogluconolacto 99.7 4.8E-14 1E-18 133.8 30.7 217 202-423 5-247 (330)
194 KOG0642 Cell-cycle nuclear pro 99.7 1.9E-16 4E-21 147.9 13.6 235 191-430 296-558 (577)
195 KOG0771 Prolactin regulatory e 99.7 4.2E-16 9E-21 140.9 14.7 195 191-392 148-355 (398)
196 PF08662 eIF2A: Eukaryotic tra 99.7 5.8E-15 1.3E-19 127.7 21.4 157 235-398 6-185 (194)
197 KOG1188 WD40 repeat protein [G 99.7 9E-16 1.9E-20 135.1 15.5 180 248-427 41-236 (376)
198 KOG1587 Cytoplasmic dynein int 99.7 4.2E-15 9E-20 145.3 21.7 233 148-392 262-517 (555)
199 KOG2111 Uncharacterized conser 99.7 3E-14 6.5E-19 124.5 24.4 230 192-430 8-253 (346)
200 PRK02889 tolB translocation pr 99.7 2.2E-14 4.9E-19 140.3 26.8 214 209-431 176-398 (427)
201 KOG4532 WD40-like repeat conta 99.7 1.7E-14 3.7E-19 123.2 21.7 281 124-424 24-323 (344)
202 KOG2394 WD40 protein DMR-N9 [G 99.7 1.7E-15 3.8E-20 140.6 16.4 193 144-371 188-384 (636)
203 KOG0644 Uncharacterized conser 99.7 1.2E-16 2.6E-21 155.0 9.2 233 191-437 192-469 (1113)
204 PRK03629 tolB translocation pr 99.7 7.2E-14 1.6E-18 136.6 28.7 211 192-413 201-427 (429)
205 KOG1524 WD40 repeat-containing 99.7 2.1E-15 4.6E-20 139.9 16.1 171 248-424 76-247 (737)
206 PRK03629 tolB translocation pr 99.7 9.2E-14 2E-18 135.9 28.8 214 209-431 179-401 (429)
207 PRK05137 tolB translocation pr 99.7 1.3E-13 2.9E-18 135.4 28.4 206 209-425 182-398 (435)
208 KOG2394 WD40 protein DMR-N9 [G 99.7 1.1E-14 2.4E-19 135.3 19.3 200 198-413 184-384 (636)
209 PRK04922 tolB translocation pr 99.6 1E-13 2.2E-18 136.0 27.1 211 192-413 206-432 (433)
210 PRK04922 tolB translocation pr 99.6 8.6E-14 1.9E-18 136.6 26.1 214 209-433 184-408 (433)
211 KOG1538 Uncharacterized conser 99.6 9.5E-15 2.1E-19 138.8 17.6 223 191-427 14-246 (1081)
212 KOG1272 WD40-repeat-containing 99.6 5.2E-16 1.1E-20 141.6 8.6 282 110-423 98-399 (545)
213 KOG2111 Uncharacterized conser 99.6 5.1E-13 1.1E-17 116.9 26.7 177 150-349 74-257 (346)
214 KOG3881 Uncharacterized conser 99.6 4.5E-14 9.8E-19 126.6 19.8 236 191-431 57-318 (412)
215 KOG1517 Guanine nucleotide bin 99.6 6.3E-14 1.4E-18 139.7 22.8 237 192-430 1069-1330(1387)
216 KOG1963 WD40 repeat protein [G 99.6 4.9E-13 1.1E-17 131.4 27.9 277 135-427 165-532 (792)
217 KOG2139 WD40 repeat protein [G 99.6 1.3E-12 2.8E-17 116.2 26.9 237 188-430 139-428 (445)
218 KOG1523 Actin-related protein 99.6 2.8E-14 6.1E-19 124.8 16.2 195 232-429 10-232 (361)
219 KOG1310 WD40 repeat protein [G 99.6 1.4E-14 3E-19 134.9 14.6 206 191-399 52-311 (758)
220 PF08662 eIF2A: Eukaryotic tra 99.6 1.5E-13 3.3E-18 118.8 19.6 139 280-424 9-164 (194)
221 KOG1963 WD40 repeat protein [G 99.6 3.3E-13 7.1E-18 132.7 24.0 227 198-430 27-319 (792)
222 PRK02889 tolB translocation pr 99.6 1.1E-12 2.3E-17 128.5 27.7 212 192-414 198-425 (427)
223 KOG2139 WD40 repeat protein [G 99.6 9.3E-14 2E-18 123.4 18.1 181 236-423 102-300 (445)
224 PRK05137 tolB translocation pr 99.6 2.3E-12 4.9E-17 126.7 29.9 212 191-414 203-433 (435)
225 KOG1240 Protein kinase contain 99.6 7.4E-13 1.6E-17 134.1 24.9 237 191-431 1050-1332(1431)
226 KOG0644 Uncharacterized conser 99.6 7.5E-15 1.6E-19 142.8 10.0 224 140-394 201-471 (1113)
227 KOG4227 WD40 repeat protein [G 99.6 7.3E-14 1.6E-18 125.1 15.0 196 222-420 46-261 (609)
228 PF02239 Cytochrom_D1: Cytochr 99.6 2.2E-11 4.7E-16 115.9 32.8 255 148-426 13-338 (369)
229 KOG1310 WD40 repeat protein [G 99.6 5E-14 1.1E-18 131.2 13.3 162 226-390 44-230 (758)
230 TIGR02800 propeller_TolB tol-p 99.6 4.8E-12 1E-16 124.2 28.0 212 209-431 170-392 (417)
231 KOG2321 WD40 repeat protein [G 99.5 1.6E-12 3.6E-17 122.0 21.1 179 250-430 148-340 (703)
232 TIGR02800 propeller_TolB tol-p 99.5 1.4E-11 2.9E-16 121.0 28.7 209 192-411 192-416 (417)
233 PRK01029 tolB translocation pr 99.5 1.4E-11 3.1E-16 120.1 28.4 210 209-425 165-392 (428)
234 KOG4497 Uncharacterized conser 99.5 1E-13 2.3E-18 121.6 11.8 225 191-434 12-241 (447)
235 KOG1334 WD40 repeat protein [G 99.5 1.3E-13 2.8E-18 126.9 12.5 251 191-445 144-442 (559)
236 KOG0280 Uncharacterized conser 99.5 2.2E-12 4.9E-17 111.8 19.0 223 191-414 16-264 (339)
237 PF10282 Lactonase: Lactonase, 99.5 4.7E-10 1E-14 106.7 37.0 234 192-427 41-315 (345)
238 KOG0280 Uncharacterized conser 99.5 2.8E-12 6.1E-17 111.2 19.3 232 198-432 83-332 (339)
239 PRK00178 tolB translocation pr 99.5 2.4E-11 5.3E-16 119.5 28.5 210 210-430 180-400 (430)
240 PRK04792 tolB translocation pr 99.5 2.8E-11 6.1E-16 118.9 28.5 211 210-431 199-420 (448)
241 KOG4547 WD40 repeat-containing 99.5 5.4E-12 1.2E-16 119.2 22.1 173 246-421 4-207 (541)
242 PRK00178 tolB translocation pr 99.5 4.8E-11 1E-15 117.5 29.3 213 191-414 200-428 (430)
243 PRK04792 tolB translocation pr 99.5 2.5E-11 5.4E-16 119.3 27.1 212 192-414 220-447 (448)
244 KOG1240 Protein kinase contain 99.5 1.1E-11 2.5E-16 125.7 24.3 237 143-392 1063-1335(1431)
245 COG2706 3-carboxymuconate cycl 99.5 5.4E-10 1.2E-14 100.3 32.1 233 192-427 44-314 (346)
246 KOG4547 WD40 repeat-containing 99.5 7.1E-12 1.5E-16 118.5 21.0 191 199-392 5-221 (541)
247 KOG1334 WD40 repeat protein [G 99.5 7.2E-13 1.6E-17 122.1 12.4 266 150-432 163-465 (559)
248 KOG1354 Serine/threonine prote 99.4 2.1E-11 4.6E-16 107.9 19.1 235 191-428 27-354 (433)
249 KOG2321 WD40 repeat protein [G 99.4 2.2E-11 4.7E-16 114.6 20.1 186 231-420 50-290 (703)
250 KOG0974 WD-repeat protein WDR6 99.4 5.7E-12 1.2E-16 126.2 17.2 191 195-392 95-289 (967)
251 KOG4497 Uncharacterized conser 99.4 2.4E-10 5.3E-15 100.7 24.6 266 135-427 53-426 (447)
252 PF10282 Lactonase: Lactonase, 99.4 7.2E-09 1.6E-13 98.6 36.8 260 134-411 40-345 (345)
253 KOG0974 WD-repeat protein WDR6 99.4 1.1E-11 2.3E-16 124.2 17.5 228 198-438 60-293 (967)
254 KOG1064 RAVE (regulator of V-A 99.4 3.4E-12 7.4E-17 133.6 12.5 214 192-426 2211-2439(2439)
255 PF02239 Cytochrom_D1: Cytochr 99.4 1.1E-09 2.4E-14 104.3 28.0 192 202-399 9-210 (369)
256 PRK01029 tolB translocation pr 99.3 1.5E-09 3.2E-14 106.0 28.3 211 196-415 193-426 (428)
257 TIGR02658 TTQ_MADH_Hv methylam 99.3 6.8E-09 1.5E-13 96.8 29.6 206 209-423 27-319 (352)
258 PRK04043 tolB translocation pr 99.3 5.5E-09 1.2E-13 101.4 29.5 188 239-433 192-397 (419)
259 COG4946 Uncharacterized protei 99.2 9.6E-09 2.1E-13 95.0 25.0 144 275-421 358-506 (668)
260 COG2706 3-carboxymuconate cycl 99.2 2.9E-07 6.2E-12 83.1 33.1 217 194-412 95-345 (346)
261 COG5170 CDC55 Serine/threonine 99.2 4.2E-10 9.2E-15 98.5 14.8 235 191-429 28-363 (460)
262 KOG1409 Uncharacterized conser 99.2 2.6E-09 5.7E-14 94.9 19.7 201 187-392 66-271 (404)
263 KOG2315 Predicted translation 99.2 2.7E-09 5.8E-14 100.6 19.7 197 205-413 190-410 (566)
264 KOG2315 Predicted translation 99.2 1.9E-08 4.1E-13 95.0 25.0 120 298-424 251-375 (566)
265 KOG1064 RAVE (regulator of V-A 99.2 1.3E-10 2.8E-15 122.2 11.2 179 240-432 2214-2397(2439)
266 KOG2041 WD40 repeat protein [G 99.2 8.6E-10 1.9E-14 106.5 15.3 230 191-426 16-281 (1189)
267 COG4946 Uncharacterized protei 99.2 3.5E-08 7.5E-13 91.4 25.0 225 140-380 276-507 (668)
268 KOG2314 Translation initiation 99.1 9.3E-09 2E-13 96.8 20.8 232 191-428 253-562 (698)
269 PLN02919 haloacid dehalogenase 99.1 9.1E-08 2E-12 103.0 30.3 226 198-430 579-885 (1057)
270 TIGR03300 assembly_YfgL outer 99.1 6.4E-08 1.4E-12 93.6 26.6 216 198-427 144-373 (377)
271 PF08450 SGL: SMP-30/Gluconola 99.1 6.9E-07 1.5E-11 80.9 31.3 212 198-423 11-245 (246)
272 PRK04043 tolB translocation pr 99.1 2.1E-07 4.5E-12 90.5 29.2 199 198-409 198-417 (419)
273 KOG1354 Serine/threonine prote 99.1 6.2E-09 1.3E-13 92.6 16.6 159 187-349 162-360 (433)
274 TIGR02658 TTQ_MADH_Hv methylam 99.1 6.6E-07 1.4E-11 83.7 30.7 262 113-400 28-339 (352)
275 KOG3914 WD repeat protein WDR4 99.1 5.5E-09 1.2E-13 94.8 15.5 156 198-358 73-232 (390)
276 KOG4714 Nucleoporin [Nuclear s 99.0 1.8E-09 3.9E-14 92.5 10.6 196 191-392 38-255 (319)
277 KOG2066 Vacuolar assembly/sort 99.0 1.4E-08 3.1E-13 99.7 18.1 180 191-391 41-233 (846)
278 PLN02919 haloacid dehalogenase 99.0 8E-07 1.7E-11 95.8 33.0 199 193-395 627-892 (1057)
279 KOG4190 Uncharacterized conser 99.0 1.5E-09 3.2E-14 102.1 9.7 203 191-400 737-957 (1034)
280 KOG0309 Conserved WD40 repeat- 99.0 7.3E-09 1.6E-13 100.6 14.6 228 200-430 83-336 (1081)
281 COG5354 Uncharacterized protei 99.0 9.9E-07 2.2E-11 82.7 26.4 248 150-422 107-378 (561)
282 PF04762 IKI3: IKI3 family; I 99.0 7.9E-07 1.7E-11 94.1 29.3 186 233-425 76-326 (928)
283 KOG3914 WD repeat protein WDR4 99.0 1.4E-08 3E-13 92.3 13.7 153 243-399 71-231 (390)
284 TIGR03300 assembly_YfgL outer 99.0 8.6E-07 1.9E-11 85.8 27.0 216 196-427 102-332 (377)
285 KOG1409 Uncharacterized conser 98.9 3.9E-08 8.5E-13 87.6 15.3 200 227-430 19-267 (404)
286 KOG1832 HIV-1 Vpr-binding prot 98.9 5.5E-10 1.2E-14 110.2 3.8 209 191-421 1103-1319(1516)
287 KOG1275 PAB-dependent poly(A) 98.9 3.1E-08 6.8E-13 98.5 15.6 181 198-389 146-340 (1118)
288 PF13360 PQQ_2: PQQ-like domai 98.9 3.7E-06 7.9E-11 75.7 27.3 186 198-397 35-236 (238)
289 KOG2695 WD40 repeat protein [G 98.9 1.1E-08 2.4E-13 91.1 9.6 147 251-400 228-385 (425)
290 KOG4532 WD40-like repeat conta 98.9 4.1E-07 8.8E-12 78.6 18.3 168 249-416 86-263 (344)
291 COG5354 Uncharacterized protei 98.9 1.5E-06 3.2E-11 81.6 23.4 236 192-437 74-349 (561)
292 PF11768 DUF3312: Protein of u 98.8 2.2E-05 4.7E-10 75.8 31.2 116 275-393 204-331 (545)
293 PF07433 DUF1513: Protein of u 98.8 6.3E-06 1.4E-10 74.5 25.8 213 199-421 17-274 (305)
294 PF08450 SGL: SMP-30/Gluconola 98.8 3.8E-05 8.2E-10 69.5 31.4 216 137-380 6-244 (246)
295 KOG2041 WD40 repeat protein [G 98.8 9E-07 2E-11 86.2 21.3 224 191-422 73-327 (1189)
296 KOG0309 Conserved WD40 repeat- 98.8 8.7E-08 1.9E-12 93.3 13.8 219 194-417 31-259 (1081)
297 KOG2114 Vacuolar assembly/sort 98.8 2.2E-06 4.7E-11 85.4 23.4 206 191-404 27-257 (933)
298 KOG0882 Cyclophilin-related pe 98.8 4.5E-08 9.8E-13 90.1 10.9 202 191-396 11-236 (558)
299 PF04762 IKI3: IKI3 family; I 98.8 6E-06 1.3E-10 87.6 28.4 227 191-428 77-374 (928)
300 PF00400 WD40: WD domain, G-be 98.8 2.1E-08 4.6E-13 62.1 5.9 39 308-346 1-39 (39)
301 KOG4714 Nucleoporin [Nuclear s 98.8 5E-08 1.1E-12 83.8 10.0 153 191-348 93-254 (319)
302 PF13360 PQQ_2: PQQ-like domai 98.8 3.3E-06 7.1E-11 76.0 22.7 207 208-426 2-223 (238)
303 KOG1275 PAB-dependent poly(A) 98.8 2.4E-07 5.2E-12 92.4 15.2 177 249-431 149-340 (1118)
304 KOG4190 Uncharacterized conser 98.7 1E-07 2.3E-12 89.9 11.4 262 143-428 749-1031(1034)
305 KOG2066 Vacuolar assembly/sort 98.7 5.3E-07 1.1E-11 89.0 16.5 170 248-431 50-231 (846)
306 COG0823 TolB Periplasmic compo 98.7 8.2E-07 1.8E-11 85.8 17.2 181 242-424 200-390 (425)
307 KOG1912 WD40 repeat protein [G 98.7 4.6E-06 9.9E-11 82.2 21.9 229 142-392 26-305 (1062)
308 PF00400 WD40: WD domain, G-be 98.7 8.9E-08 1.9E-12 59.3 6.0 38 352-389 2-39 (39)
309 KOG1912 WD40 repeat protein [G 98.6 1E-05 2.3E-10 79.7 22.2 238 191-432 17-303 (1062)
310 KOG2314 Translation initiation 98.6 1.2E-06 2.5E-11 83.1 15.0 178 240-422 216-412 (698)
311 KOG2695 WD40 repeat protein [G 98.6 2.1E-07 4.5E-12 83.1 9.3 152 198-359 224-386 (425)
312 PRK11138 outer membrane biogen 98.6 2.3E-05 5E-10 76.2 24.5 216 198-427 159-388 (394)
313 COG5170 CDC55 Serine/threonine 98.6 8.2E-07 1.8E-11 78.3 12.4 195 191-390 87-366 (460)
314 PF11768 DUF3312: Protein of u 98.6 8.2E-06 1.8E-10 78.6 19.8 88 260-349 239-330 (545)
315 PF15492 Nbas_N: Neuroblastoma 98.6 0.00017 3.8E-09 63.6 25.4 195 191-400 45-268 (282)
316 PF07433 DUF1513: Protein of u 98.5 0.00011 2.3E-09 66.7 24.2 190 243-433 13-254 (305)
317 PF08553 VID27: VID27 cytoplas 98.5 1.6E-05 3.6E-10 81.3 20.7 153 124-305 483-646 (794)
318 PRK02888 nitrous-oxide reducta 98.5 1.5E-05 3.1E-10 78.8 19.2 148 243-392 201-405 (635)
319 PF15492 Nbas_N: Neuroblastoma 98.4 0.00057 1.2E-08 60.4 25.6 216 198-430 8-256 (282)
320 KOG1008 Uncharacterized conser 98.4 6E-08 1.3E-12 93.2 1.1 194 192-391 59-275 (783)
321 PRK11138 outer membrane biogen 98.4 0.00023 4.9E-09 69.3 25.7 190 196-398 117-319 (394)
322 PF03178 CPSF_A: CPSF A subuni 98.4 0.00015 3.3E-09 68.4 23.2 218 210-434 3-266 (321)
323 KOG0882 Cyclophilin-related pe 98.4 2.8E-06 6E-11 78.7 10.2 195 231-430 8-228 (558)
324 COG3391 Uncharacterized conser 98.4 0.0011 2.3E-08 64.1 28.7 184 236-424 77-273 (381)
325 PF08553 VID27: VID27 cytoplas 98.4 6.7E-05 1.4E-09 76.9 20.8 139 249-390 496-646 (794)
326 KOG1920 IkappaB kinase complex 98.3 0.00012 2.5E-09 76.2 21.9 205 233-443 69-329 (1265)
327 COG0823 TolB Periplasmic compo 98.3 3E-05 6.5E-10 75.1 15.3 161 259-424 175-346 (425)
328 COG3386 Gluconolactonase [Carb 98.3 0.0014 3E-08 60.7 25.5 213 201-425 39-277 (307)
329 PRK02888 nitrous-oxide reducta 98.2 0.00056 1.2E-08 67.9 23.7 144 284-430 200-401 (635)
330 PF06977 SdiA-regulated: SdiA- 98.2 0.0012 2.6E-08 59.0 23.7 191 228-423 17-240 (248)
331 KOG1920 IkappaB kinase complex 98.2 0.00076 1.6E-08 70.4 24.7 195 191-393 70-324 (1265)
332 KOG2114 Vacuolar assembly/sort 98.2 9.8E-05 2.1E-09 74.0 17.7 177 243-421 32-232 (933)
333 PF08596 Lgl_C: Lethal giant l 98.2 0.00055 1.2E-08 65.8 22.0 225 191-421 3-324 (395)
334 KOG3621 WD40 repeat-containing 98.2 0.00055 1.2E-08 67.5 21.6 112 191-307 37-155 (726)
335 KOG1832 HIV-1 Vpr-binding prot 98.2 1.3E-06 2.8E-11 87.1 3.8 158 267-428 1091-1257(1516)
336 cd00216 PQQ_DH Dehydrogenases 98.2 0.0027 6E-08 63.5 27.5 159 258-426 257-459 (488)
337 KOG1008 Uncharacterized conser 98.1 5.3E-07 1.1E-11 86.9 0.5 186 235-424 59-265 (783)
338 PF04053 Coatomer_WDAD: Coatom 98.1 0.0012 2.6E-08 64.4 23.0 208 193-428 38-257 (443)
339 KOG1645 RING-finger-containing 98.1 1.8E-05 3.9E-10 72.4 9.7 158 259-419 175-346 (463)
340 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.00055 1.2E-08 59.6 17.6 145 244-390 20-164 (354)
341 PF06433 Me-amine-dh_H: Methyl 98.0 0.01 2.3E-07 54.7 26.7 268 113-401 18-330 (342)
342 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0074 1.6E-07 52.7 25.0 112 191-308 54-167 (354)
343 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0072 1.6E-07 57.8 26.5 229 192-424 47-348 (353)
344 KOG3621 WD40 repeat-containing 98.0 6.1E-05 1.3E-09 73.9 11.5 139 275-413 32-180 (726)
345 KOG2395 Protein involved in va 97.9 0.00024 5.1E-09 67.7 13.9 145 244-391 343-500 (644)
346 KOG1645 RING-finger-containing 97.9 0.0019 4.1E-08 59.6 18.9 223 189-421 193-450 (463)
347 COG3391 Uncharacterized conser 97.9 0.012 2.7E-07 56.7 26.0 211 198-416 84-311 (381)
348 cd00216 PQQ_DH Dehydrogenases 97.9 0.014 3.1E-07 58.4 27.2 190 200-400 111-383 (488)
349 KOG3617 WD40 and TPR repeat-co 97.9 0.00016 3.5E-09 72.3 12.5 105 242-348 23-131 (1416)
350 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0012 2.7E-08 63.1 18.3 163 256-427 22-207 (353)
351 COG3386 Gluconolactonase [Carb 97.9 0.011 2.4E-07 54.7 23.4 176 198-380 76-274 (307)
352 KOG4640 Anaphase-promoting com 97.8 0.0001 2.3E-09 71.5 9.7 96 275-371 19-115 (665)
353 PF03178 CPSF_A: CPSF A subuni 97.8 0.03 6.5E-07 52.8 26.4 182 199-388 42-262 (321)
354 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0023 5E-08 48.7 14.8 100 279-386 2-109 (111)
355 PF14583 Pectate_lyase22: Olig 97.8 0.036 7.8E-07 52.2 29.8 250 150-423 59-370 (386)
356 PF04841 Vps16_N: Vps16, N-ter 97.8 0.022 4.9E-07 55.4 25.0 189 210-414 62-270 (410)
357 PF02897 Peptidase_S9_N: Proly 97.8 0.026 5.7E-07 55.3 26.0 193 241-434 130-355 (414)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.058 1.3E-06 54.4 28.7 143 258-402 272-501 (527)
359 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0049 1.1E-07 46.9 15.4 103 235-343 2-109 (111)
360 PF04053 Coatomer_WDAD: Coatom 97.7 0.0026 5.5E-08 62.1 17.7 163 234-414 34-207 (443)
361 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.8E-09 43.7 5.5 39 308-346 2-40 (40)
362 PF04841 Vps16_N: Vps16, N-ter 97.7 0.069 1.5E-06 52.1 29.7 175 191-374 82-272 (410)
363 KOG2395 Protein involved in va 97.7 0.00081 1.7E-08 64.2 12.4 133 287-422 344-490 (644)
364 KOG4640 Anaphase-promoting com 97.6 0.0003 6.4E-09 68.4 9.5 94 318-413 20-115 (665)
365 KOG3617 WD40 and TPR repeat-co 97.6 0.00012 2.6E-09 73.2 7.0 110 279-391 18-131 (1416)
366 PF06977 SdiA-regulated: SdiA- 97.6 0.057 1.2E-06 48.4 23.7 189 191-388 23-247 (248)
367 PF02897 Peptidase_S9_N: Proly 97.5 0.12 2.6E-06 50.6 26.7 225 193-424 129-391 (414)
368 PRK13616 lipoprotein LpqB; Pro 97.5 0.011 2.5E-07 59.9 19.0 180 234-425 351-560 (591)
369 COG3490 Uncharacterized protei 97.5 0.011 2.4E-07 52.5 16.1 161 266-426 57-248 (366)
370 PF00780 CNH: CNH domain; Int 97.5 0.085 1.8E-06 48.4 26.5 227 197-443 5-272 (275)
371 smart00320 WD40 WD40 repeats. 97.5 0.00041 8.9E-09 41.4 5.4 38 352-389 3-40 (40)
372 PRK13616 lipoprotein LpqB; Pro 97.4 0.01 2.2E-07 60.3 18.0 143 277-425 350-517 (591)
373 PF05694 SBP56: 56kDa selenium 97.4 0.12 2.6E-06 49.3 24.2 223 198-421 86-391 (461)
374 PHA02713 hypothetical protein; 97.4 0.0085 1.8E-07 60.9 17.0 189 197-396 302-538 (557)
375 COG5167 VID27 Protein involved 97.4 0.014 3E-07 55.9 16.6 144 244-391 477-632 (776)
376 PF08596 Lgl_C: Lethal giant l 97.3 0.032 7E-07 53.8 19.2 193 189-382 86-327 (395)
377 PF05096 Glu_cyclase_2: Glutam 97.3 0.12 2.5E-06 46.3 22.8 185 230-423 42-250 (264)
378 PF00780 CNH: CNH domain; Int 97.2 0.16 3.5E-06 46.6 27.9 197 191-401 37-265 (275)
379 TIGR03074 PQQ_membr_DH membran 97.2 0.22 4.8E-06 52.2 24.7 198 199-398 194-484 (764)
380 PF14583 Pectate_lyase22: Olig 97.1 0.24 5.2E-06 46.8 24.5 218 198-424 46-303 (386)
381 PF06433 Me-amine-dh_H: Methyl 97.1 0.22 4.8E-06 46.2 26.5 221 195-420 43-306 (342)
382 PF10647 Gmad1: Lipoprotein Lp 97.1 0.053 1.2E-06 49.1 17.4 145 278-425 25-187 (253)
383 TIGR02604 Piru_Ver_Nterm putat 97.0 0.061 1.3E-06 51.7 18.0 144 278-424 15-204 (367)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 0.28 6.1E-06 49.5 23.1 192 199-396 69-338 (527)
385 PF05694 SBP56: 56kDa selenium 97.0 0.24 5.2E-06 47.4 20.7 180 198-380 140-392 (461)
386 KOG2079 Vacuolar assembly/sort 97.0 0.0036 7.8E-08 64.8 8.9 100 287-389 98-201 (1206)
387 PF14870 PSII_BNR: Photosynthe 96.9 0.36 7.8E-06 44.6 23.8 180 198-388 113-301 (302)
388 KOG2444 WD40 repeat protein [G 96.9 0.0024 5.2E-08 54.8 5.9 140 249-392 32-178 (238)
389 KOG1897 Damage-specific DNA bi 96.8 0.79 1.7E-05 47.9 28.6 151 273-427 711-892 (1096)
390 KOG3630 Nuclear pore complex, 96.8 0.013 2.8E-07 61.3 11.3 143 276-420 100-260 (1405)
391 KOG4499 Ca2+-binding protein R 96.8 0.31 6.8E-06 42.3 21.6 207 199-413 27-263 (310)
392 PF10313 DUF2415: Uncharacteri 96.8 0.0068 1.5E-07 37.3 5.6 37 362-398 1-40 (43)
393 PF14870 PSII_BNR: Photosynthe 96.7 0.48 1E-05 43.8 22.9 147 275-425 143-296 (302)
394 PHA02713 hypothetical protein; 96.7 0.19 4.2E-06 51.1 19.1 172 248-425 305-523 (557)
395 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0086 1.9E-07 38.1 5.7 35 275-310 10-44 (47)
396 PF10647 Gmad1: Lipoprotein Lp 96.6 0.52 1.1E-05 42.7 21.4 148 234-383 25-187 (253)
397 KOG4441 Proteins containing BT 96.6 0.17 3.6E-06 51.6 17.5 218 198-426 284-534 (571)
398 KOG2079 Vacuolar assembly/sort 96.6 0.0062 1.3E-07 63.2 7.2 97 329-425 98-197 (1206)
399 PHA03098 kelch-like protein; P 96.5 0.2 4.4E-06 50.9 18.3 189 194-394 290-514 (534)
400 PF15390 DUF4613: Domain of un 96.5 0.41 8.9E-06 47.2 18.4 149 234-391 21-186 (671)
401 KOG4499 Ca2+-binding protein R 96.5 0.14 3E-06 44.4 13.6 114 208-328 138-263 (310)
402 COG3204 Uncharacterized protei 96.5 0.32 6.9E-06 43.8 16.3 146 276-422 85-251 (316)
403 KOG2444 WD40 repeat protein [G 96.4 0.012 2.7E-07 50.5 7.1 101 249-349 72-178 (238)
404 PRK10115 protease 2; Provision 96.3 1.7 3.8E-05 45.5 25.2 182 242-427 134-337 (686)
405 KOG4441 Proteins containing BT 96.3 0.47 1E-05 48.4 18.7 190 195-394 329-549 (571)
406 PF05096 Glu_cyclase_2: Glutam 96.0 1.1 2.3E-05 40.3 23.6 178 193-380 48-249 (264)
407 PF12894 Apc4_WD40: Anaphase-p 96.0 0.027 5.9E-07 35.8 5.5 34 361-395 11-44 (47)
408 PF12234 Rav1p_C: RAVE protein 96.0 0.38 8.2E-06 48.8 16.2 102 243-347 38-155 (631)
409 KOG3630 Nuclear pore complex, 95.9 0.085 1.9E-06 55.5 11.5 102 233-335 154-260 (1405)
410 COG3490 Uncharacterized protei 95.7 0.36 7.7E-06 43.2 13.0 103 319-422 68-180 (366)
411 PF10168 Nup88: Nuclear pore c 95.6 0.27 5.8E-06 51.2 13.7 81 277-358 85-189 (717)
412 PF15390 DUF4613: Domain of un 95.5 0.51 1.1E-05 46.6 14.3 139 277-423 20-175 (671)
413 PF14655 RAB3GAP2_N: Rab3 GTPa 95.4 2.8 6E-05 40.7 21.9 80 320-400 309-407 (415)
414 PF03022 MRJP: Major royal jel 95.4 2.3 4.9E-05 39.3 20.2 163 258-421 35-253 (287)
415 PHA03098 kelch-like protein; P 95.3 0.38 8.2E-06 48.9 14.0 141 249-394 297-467 (534)
416 KOG2247 WD40 repeat-containing 95.3 0.0028 6E-08 60.2 -1.5 140 232-377 32-175 (615)
417 COG3823 Glutamine cyclotransfe 95.3 0.95 2.1E-05 38.7 13.4 173 198-379 55-247 (262)
418 KOG1916 Nuclear protein, conta 95.2 0.038 8.2E-07 56.5 5.8 140 256-396 152-328 (1283)
419 PHA02790 Kelch-like protein; P 95.2 1.5 3.3E-05 43.8 17.4 183 197-393 270-472 (480)
420 PF12234 Rav1p_C: RAVE protein 94.8 1.3 2.9E-05 45.0 15.5 102 199-305 41-155 (631)
421 PF08728 CRT10: CRT10; InterP 94.7 2 4.3E-05 44.3 16.6 147 199-347 49-245 (717)
422 PF07995 GSDH: Glucose / Sorbo 94.7 3.2 7E-05 39.2 17.4 101 278-380 3-132 (331)
423 PF11635 Med16: Mediator compl 94.6 5.7 0.00012 42.2 20.5 74 362-435 260-352 (753)
424 KOG2377 Uncharacterized conser 94.5 1.2 2.6E-05 42.7 13.4 136 255-392 41-186 (657)
425 PLN02153 epithiospecifier prot 94.5 4.4 9.5E-05 38.5 21.8 114 194-309 28-170 (341)
426 COG5167 VID27 Protein involved 94.5 0.67 1.4E-05 44.9 11.9 134 287-423 478-623 (776)
427 COG5276 Uncharacterized conser 94.4 3.8 8.1E-05 37.2 28.6 227 191-427 130-363 (370)
428 TIGR03547 muta_rot_YjhT mutatr 94.4 4.9 0.00011 38.2 21.4 40 258-297 86-128 (346)
429 PRK13684 Ycf48-like protein; P 94.3 5 0.00011 38.0 20.6 148 232-389 172-329 (334)
430 PF10313 DUF2415: Uncharacteri 94.2 0.24 5.2E-06 30.6 5.5 32 277-308 1-35 (43)
431 TIGR03074 PQQ_membr_DH membran 94.2 9 0.0002 40.6 21.7 107 249-357 196-352 (764)
432 PF08728 CRT10: CRT10; InterP 94.2 3.6 7.9E-05 42.5 17.0 169 133-305 39-245 (717)
433 PF10168 Nup88: Nuclear pore c 94.1 1.8 4E-05 45.2 15.2 76 319-395 85-183 (717)
434 TIGR02604 Piru_Ver_Nterm putat 93.8 6.5 0.00014 37.8 24.8 142 192-339 16-204 (367)
435 PHA02790 Kelch-like protein; P 93.5 2.5 5.5E-05 42.3 14.8 165 248-424 273-456 (480)
436 COG3204 Uncharacterized protei 93.5 5.7 0.00012 36.1 21.2 185 231-419 84-299 (316)
437 KOG2377 Uncharacterized conser 93.4 2.5 5.4E-05 40.6 13.1 104 317-422 65-172 (657)
438 PF07250 Glyoxal_oxid_N: Glyox 93.2 3.2 6.9E-05 37.1 13.2 144 259-405 48-211 (243)
439 KOG2247 WD40 repeat-containing 93.1 0.013 2.8E-07 55.9 -2.0 141 281-426 39-181 (615)
440 KOG1897 Damage-specific DNA bi 93.0 14 0.00031 39.2 24.5 221 192-420 492-731 (1096)
441 PLN02193 nitrile-specifier pro 92.8 11 0.00025 37.5 19.7 188 195-394 172-413 (470)
442 PF13449 Phytase-like: Esteras 92.8 8.9 0.00019 36.2 17.9 142 277-420 20-231 (326)
443 PF12657 TFIIIC_delta: Transcr 92.5 0.99 2.1E-05 38.2 8.8 31 362-392 86-122 (173)
444 PF14655 RAB3GAP2_N: Rab3 GTPa 92.3 2.2 4.8E-05 41.3 11.7 81 275-358 306-407 (415)
445 PF07995 GSDH: Glucose / Sorbo 92.1 11 0.00024 35.6 24.9 73 354-427 246-329 (331)
446 TIGR02276 beta_rpt_yvtn 40-res 92.0 0.96 2.1E-05 27.6 6.2 41 244-284 1-41 (42)
447 COG5276 Uncharacterized conser 92.0 9.4 0.0002 34.7 24.3 140 249-394 98-244 (370)
448 PLN00033 photosystem II stabil 91.8 11 0.00024 36.5 15.9 108 275-388 279-396 (398)
449 KOG4460 Nuclear pore complex, 91.6 3 6.4E-05 40.8 11.5 78 320-397 105-204 (741)
450 PF04931 DNA_pol_phi: DNA poly 91.6 0.13 2.9E-06 54.6 3.0 6 129-134 770-775 (784)
451 COG3823 Glutamine cyclotransfe 91.3 8.8 0.00019 33.1 14.5 171 248-422 57-247 (262)
452 KOG1916 Nuclear protein, conta 91.0 0.11 2.4E-06 53.4 1.5 125 275-403 131-282 (1283)
453 PF07569 Hira: TUP1-like enhan 91.0 1.6 3.5E-05 38.4 8.7 73 273-348 9-95 (219)
454 TIGR03606 non_repeat_PQQ dehyd 90.8 18 0.00039 35.7 19.1 53 278-330 31-90 (454)
455 PF07569 Hira: TUP1-like enhan 90.7 1.5 3.3E-05 38.6 8.3 67 326-393 18-97 (219)
456 TIGR02276 beta_rpt_yvtn 40-res 90.5 1.9 4.1E-05 26.2 6.5 41 371-412 1-42 (42)
457 PF02333 Phytase: Phytase; In 90.4 17 0.00037 34.8 24.9 148 209-357 127-299 (381)
458 PF11715 Nup160: Nucleoporin N 90.3 1.8 3.8E-05 44.3 9.6 75 198-274 157-257 (547)
459 KOG4460 Nuclear pore complex, 90.2 4.8 0.0001 39.4 11.5 72 278-349 105-199 (741)
460 KOG1898 Splicing factor 3b, su 90.1 22 0.00048 38.2 16.7 121 190-310 540-677 (1205)
461 PRK10115 protease 2; Provision 90.1 28 0.0006 36.7 29.2 187 196-392 135-347 (686)
462 TIGR03548 mutarot_permut cycli 90.0 17 0.00037 34.1 18.0 141 194-339 68-233 (323)
463 PF13449 Phytase-like: Esteras 89.9 18 0.00038 34.2 16.7 98 279-377 87-230 (326)
464 PRK13684 Ycf48-like protein; P 89.5 19 0.00042 34.0 28.3 145 276-426 172-324 (334)
465 PF05935 Arylsulfotrans: Aryls 89.1 26 0.00056 35.1 16.6 142 255-400 126-310 (477)
466 TIGR03548 mutarot_permut cycli 88.8 21 0.00045 33.6 21.4 100 248-349 74-195 (323)
467 PF14761 HPS3_N: Hermansky-Pud 88.8 15 0.00033 31.9 12.5 103 289-393 29-165 (215)
468 TIGR03606 non_repeat_PQQ dehyd 88.2 28 0.00062 34.3 15.7 57 317-373 28-90 (454)
469 PF09026 CENP-B_dimeris: Centr 87.7 0.17 3.6E-06 36.9 0.0 14 67-80 40-53 (101)
470 TIGR03547 muta_rot_YjhT mutatr 87.6 26 0.00056 33.2 18.1 27 194-220 59-96 (346)
471 PF12768 Rax2: Cortical protei 87.6 12 0.00026 34.4 11.9 94 297-392 15-124 (281)
472 COG1520 FOG: WD40-like repeat 87.3 29 0.00062 33.4 22.5 196 198-401 67-278 (370)
473 PF11715 Nup160: Nucleoporin N 86.9 4.2 9.1E-05 41.5 9.7 37 363-399 216-256 (547)
474 PF14781 BBS2_N: Ciliary BBSom 86.4 15 0.00033 29.3 12.4 120 235-359 1-135 (136)
475 TIGR03118 PEPCTERM_chp_1 conse 86.3 27 0.00059 32.1 19.5 170 200-371 101-307 (336)
476 PLN00033 photosystem II stabil 86.1 35 0.00076 33.2 25.5 140 279-426 241-392 (398)
477 PF07676 PD40: WD40-like Beta 86.0 3.6 7.8E-05 24.6 5.4 32 314-345 4-38 (39)
478 PF07676 PD40: WD40-like Beta 85.7 3.4 7.5E-05 24.7 5.2 31 358-388 5-38 (39)
479 PRK14131 N-acetylneuraminic ac 85.6 35 0.00077 32.8 20.7 23 196-218 36-59 (376)
480 PRK14131 N-acetylneuraminic ac 85.5 36 0.00078 32.8 17.9 27 194-220 80-117 (376)
481 COG4590 ABC-type uncharacteriz 85.4 3.3 7E-05 39.8 7.1 145 275-421 219-375 (733)
482 PF03022 MRJP: Major royal jel 85.2 31 0.00067 31.8 19.7 170 210-379 35-253 (287)
483 PLN02193 nitrile-specifier pro 85.2 43 0.00094 33.4 16.1 140 194-339 224-387 (470)
484 PF05935 Arylsulfotrans: Aryls 85.1 44 0.00095 33.5 20.5 112 243-360 156-312 (477)
485 TIGR02171 Fb_sc_TIGR02171 Fibr 84.8 7.7 0.00017 41.0 10.1 86 291-376 321-413 (912)
486 COG5290 IkappaB kinase complex 84.5 33 0.00071 35.8 13.9 92 322-416 250-349 (1243)
487 KOG1900 Nuclear pore complex, 84.2 11 0.00023 41.4 10.9 136 254-392 96-273 (1311)
488 PF03088 Str_synth: Strictosid 84.1 9.1 0.0002 28.2 7.6 43 379-422 33-75 (89)
489 KOG2280 Vacuolar assembly/sort 84.0 57 0.0012 33.9 17.1 160 191-358 85-255 (829)
490 COG4257 Vgb Streptogramin lyas 83.9 33 0.00072 31.1 20.4 185 198-393 72-264 (353)
491 PRK13615 lipoprotein LpqB; Pro 83.8 53 0.0011 33.4 15.3 138 280-421 337-487 (557)
492 PF10433 MMS1_N: Mono-function 83.7 52 0.0011 33.2 19.7 211 198-413 221-503 (504)
493 PF14269 Arylsulfotran_2: Aryl 83.5 38 0.00082 31.5 16.4 70 279-348 146-220 (299)
494 KOG2280 Vacuolar assembly/sort 83.4 44 0.00095 34.7 14.3 172 237-414 86-270 (829)
495 PF14761 HPS3_N: Hermansky-Pud 83.2 30 0.00065 30.1 13.4 57 331-388 29-92 (215)
496 PF10214 Rrn6: RNA polymerase 83.2 70 0.0015 34.3 22.9 208 214-422 1-267 (765)
497 TIGR03032 conserved hypothetic 83.0 38 0.00082 31.4 12.6 106 212-329 188-315 (335)
498 TIGR02171 Fb_sc_TIGR02171 Fibr 82.9 9.8 0.00021 40.3 10.0 88 248-335 320-415 (912)
499 PF10395 Utp8: Utp8 family; I 82.4 65 0.0014 33.3 21.5 205 194-400 34-268 (670)
500 TIGR03118 PEPCTERM_chp_1 conse 82.3 41 0.0009 31.0 23.5 233 193-431 28-331 (336)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.1e-43 Score=311.06 Aligned_cols=265 Identities=23% Similarity=0.322 Sum_probs=239.8
Q ss_pred ccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe----CCcEEEEeccCCcEEEEEc
Q 013282 141 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQGELICKHL 216 (446)
Q Consensus 141 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~----~~~~l~tg~~dg~i~vw~~ 216 (446)
++..+..+-+|.+.+|+..+. ..+..+.||.. .|.++.| ++..||||+.||++++|++
T Consensus 187 s~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~----------------~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTS----------------RVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CCeEEEeecCCceeEeecCCc--ceeEEEecccc----------------ceeeEEEccCCCccceeeeccCCceeeecc
Confidence 555666667888999998777 55666777754 4777777 3679999999999999999
Q ss_pred CCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEe
Q 013282 217 DRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVG 295 (446)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~ 295 (446)
++.... ..+.+|...|..++| +|+|+ +|.+++.|.+-++||+.++..+.... |...|.+++|+|||.++++||
T Consensus 249 ~~e~~l---~~l~gH~~RVs~Vaf--HPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 249 SQETPL---QDLEGHLARVSRVAF--HPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred CCCcch---hhhhcchhhheeeee--cCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence 876433 556688888888887 99998 79999999999999999988877766 999999999999999999999
Q ss_pred cCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEcc-CCC
Q 013282 296 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGR 374 (446)
Q Consensus 296 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~-dg~ 374 (446)
.|..-+|||+++|+++..|.+|...|.+++|+|+|..|||||.|++++|||+|. .+.+.++.+|..-|+.++|+| .|.
T Consensus 323 lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-cccceecccccchhhheEecccCCe
Confidence 999999999999999999999999999999999999999999999999999987 777999999999999999999 789
Q ss_pred EEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 375 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 375 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+|++++.|++++||...++.+++.+.+|.+.|.++.++|++++++++++|++++-|
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 99999999999999999999999999999999999999999999999999999866
No 2
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-39 Score=275.50 Aligned_cols=267 Identities=23% Similarity=0.323 Sum_probs=237.3
Q ss_pred ccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCC
Q 013282 141 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR 218 (446)
Q Consensus 141 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~ 218 (446)
+++.|..+.|+.+++||..+.+....+.+.-. -|.+.++ .|+++|+||.|....||++.+
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~haipl~s~------------------WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS------------------WVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccceeEEecCce------------------eEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 34455566788899999999988777766533 3666666 999999999999999999985
Q ss_pred CC---eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECC-CCCEEEE
Q 013282 219 PG---VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSP-DGKLLII 293 (446)
Q Consensus 219 ~~---~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~ 293 (446)
.. .....+.+.+|.+.+.++.| -+++ .|+++|.|.+..+||+++++.+..|. |.+.|.++.++| +++.+++
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f--~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRF--LDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred ccccccceeeeeecCccceeEEEEE--cCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 52 33445678899999999998 4555 59999999999999999999999998 999999999999 9999999
Q ss_pred EecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEec--CCCceEEEEEcc
Q 013282 294 VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSIRYTS 371 (446)
Q Consensus 294 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~s~ 371 (446)
|+-|+..+|||++.+.+++.|.+|...|++++|.|+|.-|++|+.|+++|+||+|. .+.+..+.. ...+|++++||.
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeeccCcccCCceeEEEcc
Confidence 99999999999999999999999999999999999999999999999999999987 566666653 345899999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 372 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 372 dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.|++|.+|..|..+.+||.-.++.+..+.+|...|+++..+|||..|++|+||.+++.|
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 99999999999999999999999999999999999999999999999999999998876
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.7e-41 Score=299.30 Aligned_cols=235 Identities=21% Similarity=0.282 Sum_probs=218.9
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCC-CCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~-~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
+|+...+ ++..||||+.+|.++||+..... ...++.+|.+.+.++.| +|. ....+++|+.||+|++|++.+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~---~~~~l~gH~~~v~~~~f--hP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---LLQTLRGHTSRVGAAVF--HPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcc---eeEEEeccccceeeEEE--ccCCCccceeeeccCCceeeeccCCC
Confidence 4555555 99999999999999999987763 35778899999999988 787 3557999999999999999998
Q ss_pred eeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 268 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 268 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
.++..+. |...|..++|+|+|++|++++.|.+.++||+++++.+....||...|++++|+|+|.+++||+.|..-||||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 8888888 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcC-CCCcEEEEEecC
Q 013282 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP-DTESLFIGVWDR 425 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~D~ 425 (446)
+|+ +.++-.+.+|..+|.+++|+|+|..||+|+.|++++|||++....+.++.+|..-|+.+.|+| .|.+|++++.|+
T Consensus 332 lRt-gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 332 LRT-GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred ccc-CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCc
Confidence 998 899999999999999999999999999999999999999999999999999999999999999 789999999999
Q ss_pred CcceEE
Q 013282 426 TYGSLL 431 (446)
Q Consensus 426 ~~~~~l 431 (446)
+++.|.
T Consensus 411 t~kiWs 416 (459)
T KOG0272|consen 411 TVKIWS 416 (459)
T ss_pred ceeeec
Confidence 998764
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-40 Score=288.96 Aligned_cols=281 Identities=20% Similarity=0.267 Sum_probs=239.6
Q ss_pred cceeeccceeeeE-Eec-ccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe-----
Q 013282 125 KSTILHFQLRNLV-WAT-SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----- 197 (446)
Q Consensus 125 ~~~~~h~~~~~l~-~~~-~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~----- 197 (446)
..+..|.+.-..+ |++ ++..+....+++|++|+..++... .-.+.||.. .|++|+|
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~-g~~l~gH~K----------------~It~Lawep~hl 213 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI-GRALRGHKK----------------WITALAWEPLHL 213 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc-cccccCccc----------------ceeEEeeccccc
Confidence 3344444443333 554 556666677999999999888431 123455533 5889988
Q ss_pred --CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-
Q 013282 198 --KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR- 274 (446)
Q Consensus 198 --~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 274 (446)
..++||+++.||.|+|||+... .|.....+|...|+++.+ -- ..++++||.|++|++|+...|.+.+.++
T Consensus 214 ~p~~r~las~skDg~vrIWd~~~~---~~~~~lsgHT~~VTCvrw--GG--~gliySgS~DrtIkvw~a~dG~~~r~lkG 286 (480)
T KOG0271|consen 214 VPPCRRLASSSKDGSVRIWDTKLG---TCVRTLSGHTASVTCVRW--GG--EGLIYSGSQDRTIKVWRALDGKLCRELKG 286 (480)
T ss_pred CCCccceecccCCCCEEEEEccCc---eEEEEeccCccceEEEEE--cC--CceEEecCCCceEEEEEccchhHHHhhcc
Confidence 5689999999999999999766 556788899999999987 33 3489999999999999999999999998
Q ss_pred CCCCeeEEEEC-----------CCC-------------------------CEEEEEecCCcEEEEECC-CCceEEEecCC
Q 013282 275 FPWPVNHSSQS-----------PDG-------------------------KLLIIVGDNPDGLLVDSM-TGKTIASLCGH 317 (446)
Q Consensus 275 ~~~~v~~~~~s-----------p~~-------------------------~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~ 317 (446)
|...|+.++++ |.+ ..|++|++|.++.+|+.. +.+++..+.+|
T Consensus 287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH 366 (480)
T KOG0271|consen 287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH 366 (480)
T ss_pred cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence 88889998877 223 359999999999999986 56689999999
Q ss_pred CCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEe
Q 013282 318 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 397 (446)
Q Consensus 318 ~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~ 397 (446)
..-|+.+.|+||++++|++|.|+.|++||.++ ++.+.+|.+|.++|..++|+.|.++|++|+.|.++++|++++.+...
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence 99999999999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred EeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 398 QEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 398 ~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.+.+|..+|.++.|+|||..+++|+.|+.++.|
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 999999999999999999999999999776654
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=287.06 Aligned_cols=274 Identities=18% Similarity=0.205 Sum_probs=239.9
Q ss_pred cccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcC
Q 013282 140 TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLD 217 (446)
Q Consensus 140 ~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~ 217 (446)
++...+..+.|.++++||..+. ......+||.. -|.|++| ||..||+|+.||+|++|+..
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~----------------WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKN----------------WVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred CCceEEecCCCceEEeeccCCC--CcceeecCCcc----------------EEEEEEECCCcchhhccccCCeEEEecCC
Confidence 3555666677888999999888 44555666643 4888888 99999999999999999998
Q ss_pred CCCeeeEEEEeecCCCceeeEEEEe---CCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEE
Q 013282 218 RPGVSFCSRTTYDDNAITNAVEIYG---SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLII 293 (446)
Q Consensus 218 ~~~~~~~~~~~~~~~~~v~~i~~~~---s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~ 293 (446)
+++.. ...+.+|...|++++|.. .|... +|++++.||+|+|||+..++++..+. |..+|+|+.|--+ .++++
T Consensus 188 tg~~~--g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliyS 263 (480)
T KOG0271|consen 188 TGQQI--GRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYS 263 (480)
T ss_pred CCCcc--cccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEe
Confidence 87754 577889999999998731 23444 79999999999999999999998888 9999999999654 47999
Q ss_pred EecCCcEEEEECCCCceEEEecCCCCceeEEEEC-----------CCCC-------------------------EEEEEe
Q 013282 294 VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH-----------PNGV-------------------------TFATGN 337 (446)
Q Consensus 294 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-----------p~~~-------------------------~l~sgs 337 (446)
|+.|++|++|+...|++.+.|++|..+|+.++.+ |.++ .|++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999999999999999998887 3333 499999
Q ss_pred CCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCc
Q 013282 338 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTES 417 (446)
Q Consensus 338 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 417 (446)
.|.++.+|+.....+++..+.+|..-|+.+.||||++++|+|+.|..|++|+.++|+.+..+.+|-+.|..++|+.|.++
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 99999999998878899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcceEEEEec
Q 013282 418 LFIGVWDRTYGSLLEYGR 435 (446)
Q Consensus 418 l~~~~~D~~~~~~l~~~~ 435 (446)
|++|+.|.+++.|-.-.+
T Consensus 424 lVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred EEEcCCCceEEEEEeeee
Confidence 999999999988754443
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.1e-37 Score=290.62 Aligned_cols=300 Identities=22% Similarity=0.344 Sum_probs=251.6
Q ss_pred ccccceeeccceeeeEEe--cccCeEEEecCCeEEEEecCCCCc--eEEEecCCCCCC-CCCCCCCcc------------
Q 013282 122 RSVKSTILHFQLRNLVWA--TSKHDVYLMSHFSVIHWSSLTSSR--SQVLNVSGHVAP-SEKHPGSLL------------ 184 (446)
Q Consensus 122 ~~v~~~~~h~~~~~l~~~--~~~~~v~~~~~~~i~~w~~~~~~~--~~~~~~~g~~~~-~~~~~g~~~------------ 184 (446)
.+|+|+.+|+.++.|+.+ ++.+.+|..++..++|-.+.+... ...+|.+|.+.+ .+...|.++
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK 345 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee
Confidence 589999999999998855 677889999999999999888765 455666788655 444555553
Q ss_pred ccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEE
Q 013282 185 EGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (446)
Q Consensus 185 ~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iw 262 (446)
+.-+-..+.|+++ ||+++|||+.||+|+|||...+ +|..++..|.+.|+++.| +..|. .+++++.||+|+.|
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---fC~vTFteHts~Vt~v~f--~~~g~-~llssSLDGtVRAw 419 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---FCFVTFTEHTSGVTAVQF--TARGN-VLLSSSLDGTVRAW 419 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---eEEEEeccCCCceEEEEE--EecCC-EEEEeecCCeEEee
Confidence 1112346888887 9999999999999999998877 999999999999999998 77777 69999999999999
Q ss_pred ecCcceeeEeeeCCCC--eeEEEECCCCCEEEEEecC-CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCC
Q 013282 263 DMGKYQLSKHFRFPWP--VNHSSQSPDGKLLIIVGDN-PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 339 (446)
Q Consensus 263 d~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d 339 (446)
|+..+++.++|..+.+ ..|++..|.|.++.+|+.| -.|++|++++|+.+-.+.||.++|.+++|+|.+..||+||+|
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 9999999999996555 5678888889988888765 579999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec------------------
Q 013282 340 KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID------------------ 401 (446)
Q Consensus 340 ~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------ 401 (446)
+|||+||+-.....+.++.. ...+..++|+|+|+.||+++.||.|.+||+..+.....+.+
T Consensus 500 kTVRiW~if~s~~~vEtl~i-~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLEI-RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred ceEEEEEeeccCceeeeEee-ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 99999999765567777764 55789999999999999999999999999987654422221
Q ss_pred --cccCeEEEEEcCCCCcEEEEEecCCcc
Q 013282 402 --FFGEISGISFSPDTESLFIGVWDRTYG 428 (446)
Q Consensus 402 --~~~~v~~~~~spdg~~l~~~~~D~~~~ 428 (446)
.....+.+++|+||..|++|+....+.
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iC 607 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSIC 607 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEE
Confidence 124688999999999999987776654
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.7e-37 Score=293.22 Aligned_cols=237 Identities=23% Similarity=0.358 Sum_probs=218.7
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCC----------------------------eeeEEEEeecCCCceeeEEE
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----------------------------VSFCSRTTYDDNAITNAVEI 240 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~----------------------------~~~~~~~~~~~~~~v~~i~~ 240 (446)
.++|..+ ++..||.|-.|..|++|.+.... .....+...+|.++|..+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 4777777 77888999999999999987311 01123556799999999998
Q ss_pred EeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCC
Q 013282 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD 319 (446)
Q Consensus 241 ~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 319 (446)
+|+.+ +|+++|.|++||+|.+.+..++-.++ |..||.++.|+|-|-+||+++.|++.++|.....++++.+.+|.+
T Consensus 460 --sPd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghls 536 (707)
T KOG0263|consen 460 --SPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS 536 (707)
T ss_pred --ccccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccc
Confidence 99987 79999999999999999999998888 999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEe
Q 013282 320 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 399 (446)
Q Consensus 320 ~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~ 399 (446)
.|.|++|||+.+++|+||.|.+||+||+.+ +..++.|.||.++|.+++|||+|++|++|+.||.|++||+.++..+.++
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred ccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 999999999999999999999999999966 8899999999999999999999999999999999999999999999999
Q ss_pred eccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 400 IDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 400 ~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
.+|.+.|.++.||.+|..|++|+.|.++..|-
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred hcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 99999999999999999999999999998773
No 8
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.9e-35 Score=258.43 Aligned_cols=282 Identities=18% Similarity=0.220 Sum_probs=226.0
Q ss_pred ceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceE
Q 013282 113 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV 192 (446)
Q Consensus 113 ~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v 192 (446)
...+|.+|+..|.++..||..+.++.+.+... -.+|+..++. .+..+.||.. .|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~--------AflW~~~~ge--~~~eltgHKD----------------SV 109 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDL--------AFLWDISTGE--FAGELTGHKD----------------SV 109 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCce--------EEEEEccCCc--ceeEecCCCC----------------ce
Confidence 45678899999999999995554444444333 4679998885 6777788755 48
Q ss_pred EEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEE-EEeCCCCCeEEEEEeCCCcEEEEecCccee
Q 013282 193 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVE-IYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (446)
Q Consensus 193 ~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~-~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~ 269 (446)
+|++| +|.+||||+.+|.|+||...++.... .+... +..+. +.|+|.+. +|++|+.||.|.+|.+..+..
T Consensus 110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~~e----~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~ 182 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLDQE----VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQAL 182 (399)
T ss_pred EEEEEccCceEEEecCCCccEEEEEcccCceEE--Eeecc----cCceEEEEeccccc-EEEeecCCCcEEEEECCCcce
Confidence 88888 99999999999999999998886542 22212 22222 34588776 899999999999999998776
Q ss_pred eEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecC--------------------------------
Q 013282 270 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-------------------------------- 316 (446)
Q Consensus 270 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------------- 316 (446)
.+.+. |..++++-.|.|+|++++++..||+|++|++.++++++.+.+
T Consensus 183 ~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 183 CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence 67776 999999999999999999999999999999999998877631
Q ss_pred -------------------CCCceeEEEE---CCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCC
Q 013282 317 -------------------HLDFSFASAW---HPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 374 (446)
Q Consensus 317 -------------------~~~~v~~~~~---~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 374 (446)
+...+.++.+ +..-.++|+|+.||+|.|||+.. ..++..-.|..+|..+.|-+ ..
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~--~~~R~~c~he~~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA--STLRHICEHEDGVTKLKWLN-TD 339 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc--chhheeccCCCceEEEEEcC-cc
Confidence 1111122222 22345788999999999999954 44555556888999999999 68
Q ss_pred EEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 375 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 375 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+|++++.+|.|++||.++|.++..+.+|..+|.+++++|+++++++++.|++.+.+
T Consensus 340 ~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999876544
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.8e-35 Score=243.79 Aligned_cols=254 Identities=18% Similarity=0.301 Sum_probs=217.6
Q ss_pred eEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEE
Q 013282 136 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELIC 213 (446)
Q Consensus 136 l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~v 213 (446)
|-..+.+..+.......|+++|+.+++...++++.||.. .|.++.| +|+.+++||.||+++|
T Consensus 46 LeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k----------------NVtaVgF~~dgrWMyTgseDgt~kI 109 (311)
T KOG0315|consen 46 LEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK----------------NVTAVGFQCDGRWMYTGSEDGTVKI 109 (311)
T ss_pred EEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC----------------ceEEEEEeecCeEEEecCCCceEEE
Confidence 334445555666666778999999998888888887643 4888888 9999999999999999
Q ss_pred EEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee--CCCCeeEEEECCCCCEE
Q 013282 214 KHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSPDGKLL 291 (446)
Q Consensus 214 w~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l 291 (446)
||++.. .|.+.+ .+.++|+.+.+ +|+.. -|++|..+|.|++||+....+...+. ...+|.++.+.|||+++
T Consensus 110 WdlR~~---~~qR~~-~~~spVn~vvl--hpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml 182 (311)
T KOG0315|consen 110 WDLRSL---SCQRNY-QHNSPVNTVVL--HPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSML 182 (311)
T ss_pred EeccCc---ccchhc-cCCCCcceEEe--cCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEE
Confidence 999884 333443 45689999988 89877 59999999999999998877666655 45689999999999999
Q ss_pred EEEecCCcEEEEECCCC------ceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceE
Q 013282 292 IIVGDNPDGLLVDSMTG------KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 365 (446)
Q Consensus 292 ~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~ 365 (446)
+++...|..++|++-+. .++.+++.|.+.+..+.++|++++||++|.|.+++||+....-+.-..+.+|...+.
T Consensus 183 ~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvW 262 (311)
T KOG0315|consen 183 AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVW 262 (311)
T ss_pred EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEE
Confidence 99999999999998754 356678899999999999999999999999999999999765466678889999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEc
Q 013282 366 SIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFS 412 (446)
Q Consensus 366 ~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 412 (446)
.++||.||+||++|+.|+.+++|++..++.+.+..+|.....+++..
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999999999999999999999998887777653
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=241.36 Aligned_cols=259 Identities=20% Similarity=0.212 Sum_probs=223.4
Q ss_pred CCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEE
Q 013282 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (446)
Q Consensus 150 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~ 227 (446)
|.+|+.|...+|.....+.... .+|..|.. +++.||+|+.. .|++||+++..... ...
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~d------------------sqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~P-v~t 78 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPD------------------SQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNP-VAT 78 (311)
T ss_pred cceeeeeehhcCeEEEEEecCc------------------cceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCc-eeE
Confidence 6689999999997665554332 26777777 88888888765 59999999877542 467
Q ss_pred eecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCC
Q 013282 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT 307 (446)
Q Consensus 228 ~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 307 (446)
+.+|...|.++.| ..+|+ .+++|+.||+++|||++...+.+.+.++.+|+++..+|+...|++|..+|.|++||+..
T Consensus 79 ~e~h~kNVtaVgF--~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 79 FEGHTKNVTAVGF--QCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred EeccCCceEEEEE--eecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 7788888999988 78887 69999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEecC-CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCC-----CcceEEEecCCCceEEEEEccCCCEEEEEeC
Q 013282 308 GKTIASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-----SESVAVLKGNLGAIRSIRYTSDGRYMATAEP 381 (446)
Q Consensus 308 ~~~~~~~~~-~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~-----~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 381 (446)
..+.+.+.. -...|.+++..|+|.+++.+...|.+.+|++-.. -.++..++.|.+-+..+.+|||+++||+++.
T Consensus 156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 877776653 3468999999999999999999999999998541 2467788999999999999999999999999
Q ss_pred CCeEEEEEcCCC-eeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 382 ADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 382 dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
|.+++||+..+. +...++.+|...+..++||.||+||++|+.|...+.|-
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 999999999887 55567778999999999999999999999998876653
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-34 Score=243.35 Aligned_cols=283 Identities=14% Similarity=0.210 Sum_probs=219.9
Q ss_pred eeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCc---eEEEecCCCCCCCCCCCCCccccCccceEE
Q 013282 117 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSR---SQVLNVSGHVAPSEKHPGSLLEGFTQTQVS 193 (446)
Q Consensus 117 f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~---~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~ 193 (446)
+.+++..|+........+.++.+. ..|..++.|+..+... ..+..+.||-. .|.
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sa-------srDk~ii~W~L~~dd~~~G~~~r~~~GHsH----------------~v~ 67 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSA-------SRDKTIIVWKLTSDDIKYGVPVRRLTGHSH----------------FVS 67 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEc-------ccceEEEEEEeccCccccCceeeeeeccce----------------Eec
Confidence 344455555544444433333222 2356788998766532 23444555422 355
Q ss_pred EEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeE
Q 013282 194 TLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK 271 (446)
Q Consensus 194 ~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~ 271 (446)
.+.. +|++.++|+.||++++||+.++. +.+.+.+|...|.+++| ++++. .+++|+.|.+|++|++.......
T Consensus 68 dv~~s~dg~~alS~swD~~lrlWDl~~g~---~t~~f~GH~~dVlsva~--s~dn~-qivSGSrDkTiklwnt~g~ck~t 141 (315)
T KOG0279|consen 68 DVVLSSDGNFALSASWDGTLRLWDLATGE---STRRFVGHTKDVLSVAF--STDNR-QIVSGSRDKTIKLWNTLGVCKYT 141 (315)
T ss_pred ceEEccCCceEEeccccceEEEEEecCCc---EEEEEEecCCceEEEEe--cCCCc-eeecCCCcceeeeeeecccEEEE
Confidence 5554 99999999999999999998873 34677799999999998 99987 69999999999999987655544
Q ss_pred eee--CCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 272 HFR--FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 272 ~~~--~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
... +...|+|+.|+|. ...|++++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.||.+.+||+
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 444 2678999999997 678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec----c-----ccCeEEEEEcCCCCcE
Q 013282 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----F-----FGEISGISFSPDTESL 418 (446)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~-----~~~v~~~~~spdg~~l 418 (446)
+. ++.+..+. |...|.+++|+|+..+|+.+. +..|+|||+.++..+..+.. . .-.-.+++|+++|+.|
T Consensus 222 ~~-~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 222 NE-GKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred cC-CceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 76 67777765 577899999999976666555 44599999999876655442 1 1124568999999999
Q ss_pred EEEEecCCcceEE
Q 013282 419 FIGVWDRTYGSLL 431 (446)
Q Consensus 419 ~~~~~D~~~~~~l 431 (446)
+.|-.|+.+..+-
T Consensus 299 f~g~td~~irv~q 311 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQ 311 (315)
T ss_pred EeeecCCcEEEEE
Confidence 9999999887653
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-34 Score=277.25 Aligned_cols=268 Identities=21% Similarity=0.276 Sum_probs=219.6
Q ss_pred ccceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEE------EecC--------CCCCCC
Q 013282 111 GASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQV------LNVS--------GHVAPS 176 (446)
Q Consensus 111 ~~~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~------~~~~--------g~~~~~ 176 (446)
.-.+|+|......+.|+.+......++.+. .+..|++|...+.+...+ -++. ......
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf--------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~ 439 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSSMLACGF--------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDD 439 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcchhhccc--------cccEEEEEecchhhhccccchhhhccccccccchhhhhcccc
Confidence 457899999999999999888877544333 345567787654321110 0000 000000
Q ss_pred CCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEe
Q 013282 177 EKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN 254 (446)
Q Consensus 177 ~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s 254 (446)
.......+-+ +..+|...+| +.++|++++.|++|++|.+.+. .|.....+|..+|..+.| +|.|- +|+++|
T Consensus 440 ~~~~~~~L~G-H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F--~P~Gy-YFatas 512 (707)
T KOG0263|consen 440 SSGTSRTLYG-HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQF--APRGY-YFATAS 512 (707)
T ss_pred CCceeEEeec-CCCceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEe--cCCce-EEEecC
Confidence 0000000001 1226777777 8999999999999999999887 566788899999999998 89986 799999
Q ss_pred CCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEE
Q 013282 255 NDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 333 (446)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 333 (446)
.|++.++|......+.+.+. |-..|.|+.|+|+.+++++|+.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 99999999999999999888 88999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 013282 334 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 394 (446)
Q Consensus 334 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~ 394 (446)
++|+.||.|.|||+.+ ++.+..+.+|.+.|.++.|+.+|..||+|+.|.+|++||+....
T Consensus 593 aSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred eecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999976 88999999999999999999999999999999999999987643
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.6e-34 Score=242.41 Aligned_cols=236 Identities=19% Similarity=0.270 Sum_probs=207.0
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc-
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY- 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~- 267 (446)
.|.++.| +.++|++++.||.+.|||.-+..... ...-....|..+++ +|+|+ ++++|+.|....||++.+.
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~--sPSg~-~VAcGGLdN~Csiy~ls~~d 130 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAY--SPSGN-FVACGGLDNKCSIYPLSTRD 130 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEE--CCCCC-eEEecCcCceeEEEeccccc
Confidence 6999999 99999999999999999998776543 33344556666666 99998 7999999999999999754
Q ss_pred -----eeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC-CCCEEEEEeCCC
Q 013282 268 -----QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDK 340 (446)
Q Consensus 268 -----~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~ 340 (446)
+..+.+. |.+-+.|+.|-+ ...|++++.|.++.+||+++|+.+..|.+|.+.|.+++++| +++.+++|+-|+
T Consensus 131 ~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~ 209 (343)
T KOG0286|consen 131 AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK 209 (343)
T ss_pred ccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccc
Confidence 3444555 899999999976 56799999999999999999999999999999999999999 999999999999
Q ss_pred cEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec--cccCeEEEEEcCCCCcE
Q 013282 341 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID--FFGEISGISFSPDTESL 418 (446)
Q Consensus 341 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~spdg~~l 418 (446)
+.+|||+|. +.++++|.+|...|++++|.|+|.-+++|+.|++.++||++....+..+.. -..+|++++||..|++|
T Consensus 210 ~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 210 SAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL 288 (343)
T ss_pred ceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence 999999998 799999999999999999999999999999999999999999877766653 23589999999999999
Q ss_pred EEEEecCCcceEEEEe
Q 013282 419 FIGVWDRTYGSLLEYG 434 (446)
Q Consensus 419 ~~~~~D~~~~~~l~~~ 434 (446)
++|..|.++..|-..+
T Consensus 289 fagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 289 FAGYDDFTCNVWDTLK 304 (343)
T ss_pred EeeecCCceeEeeccc
Confidence 9998888887775444
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-34 Score=241.78 Aligned_cols=234 Identities=18% Similarity=0.269 Sum_probs=201.3
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeee--EEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSF--CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~ 265 (446)
.|..++. +.+.|++++.|.++.+|++......+ ..+.+.+|+..|+.+.+ +++|+ ++++++.|+++++||+.
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~--s~dg~-~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL--SSDGN-FALSASWDGTLRLWDLA 93 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE--ccCCc-eEEeccccceEEEEEec
Confidence 5777776 67899999999999999997654322 24566789999999998 89998 79999999999999999
Q ss_pred cceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecC-CCCceeEEEECCC--CCEEEEEeCCCc
Q 013282 266 KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSFASAWHPN--GVTFATGNQDKT 341 (446)
Q Consensus 266 ~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~p~--~~~l~sgs~d~~ 341 (446)
+++..+.|. |...|.+++|+||.+.+++|+.|.+|.+|++........... +.+.|.|++|+|+ ..+|+++++|++
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt 173 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT 173 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence 999888888 999999999999999999999999999999876544433333 3899999999997 789999999999
Q ss_pred EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEE
Q 013282 342 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
|++||+++ .+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++.++. ..|...|.+++|+|+.-.|+.+
T Consensus 174 vKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-l~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 174 VKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-LEAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred EEEEccCC-cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-ccCCCeEeeEEecCCceeEeec
Confidence 99999976 788899999999999999999999999999999999999999988655 4588899999999986666654
Q ss_pred EecCCcceE
Q 013282 422 VWDRTYGSL 430 (446)
Q Consensus 422 ~~D~~~~~~ 430 (446)
.+..|++|
T Consensus 252 -t~~sIkIw 259 (315)
T KOG0279|consen 252 -TATSIKIW 259 (315)
T ss_pred -cCCceEEE
Confidence 33445544
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=263.90 Aligned_cols=268 Identities=18% Similarity=0.249 Sum_probs=224.4
Q ss_pred cCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCC
Q 013282 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP 219 (446)
Q Consensus 142 ~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~ 219 (446)
...+..+..|-+.+|+..+-+...++ .-+..+|.++.| ++.++++|..+|.|++|+.+-+
T Consensus 109 RRLltgs~SGEFtLWNg~~fnFEtil------------------QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSFNFETIL------------------QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ceeEeecccccEEEecCceeeHHHHh------------------hhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 44455555566678886433222211 112337999999 9999999999999999998765
Q ss_pred CeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCC
Q 013282 220 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNP 298 (446)
Q Consensus 220 ~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~ 298 (446)
... ....+|...|.+++| +|+.. .|+++|.||+|+|||....+..+.+. |...|.++.|+|...++++|+.|.
T Consensus 171 nVk---~~~ahh~eaIRdlaf--SpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn 244 (464)
T KOG0284|consen 171 NVK---IIQAHHAEAIRDLAF--SPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN 244 (464)
T ss_pred hhH---HhhHhhhhhhheecc--CCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc
Confidence 433 233456688999988 89777 59999999999999998888877777 999999999999999999999999
Q ss_pred cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCC-CEEE
Q 013282 299 DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMA 377 (446)
Q Consensus 299 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~ 377 (446)
.|++||.++|+++.++.+|...|.++.|+|++++|+|+|.|..++++|+|. -+.+.++++|...|+++.|+|-. .+|.
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHHHhhcchhhheeecccccccccee
Confidence 999999999999999999999999999999999999999999999999985 67889999999999999999954 5888
Q ss_pred EEeCCCeEEEEEcCCCeeEeEe-eccccCeEEEEEcCCCCcEEEEEecCCcceEEEEe
Q 013282 378 TAEPADFVHVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 434 (446)
Q Consensus 378 ~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~~ 434 (446)
+|+.||.|..|.+...+++..+ .+|.+.|.+++|+|-|..|++|+.|.+++-|-+-.
T Consensus 324 sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 9999999999998854444433 35889999999999999999999999987665443
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=251.30 Aligned_cols=280 Identities=18% Similarity=0.228 Sum_probs=245.0
Q ss_pred ccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--
Q 013282 120 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-- 197 (446)
Q Consensus 120 ~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~-- 197 (446)
+...+...++||..-.++.|+ .+.+|++||..+++. .-.+.||.. .|..+++
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as--------~d~tikv~D~~tg~~--e~~LrGHt~----------------sv~di~~~a 160 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSAS--------EDATIKVFDTETGEL--ERSLRGHTD----------------SVFDISFDA 160 (406)
T ss_pred cccceeeeeeccCceEEEEec--------CCceEEEEEccchhh--hhhhhcccc----------------ceeEEEEec
Confidence 344666667777655444332 367889999999865 444566543 3778888
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 276 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (446)
.|++||+++.|=.+++|+..+. ..|.+...+|...|.++.| -|.|. ++++++.|.+|++|++.++-++.++. |+
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f--~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ 235 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFF--LPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHS 235 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEE--EecCC-eeeecccccceeEEecccceeEEeccCch
Confidence 7899999999999999998764 3456777788899999988 68886 79999999999999999999999999 88
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCC---------------CCEEEEEeCCCc
Q 013282 277 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN---------------GVTFATGNQDKT 341 (446)
Q Consensus 277 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~---------------~~~l~sgs~d~~ 341 (446)
..|..++.+.||.++++++.|.++++|-+.++++...+..|+-+|.+++|.|. +.++.++++|++
T Consensus 236 ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 236 EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 89999999999999999999999999999999999999999999999999873 258999999999
Q ss_pred EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEE
Q 013282 342 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
|++||+.. +.++.++.+|..+|+.++|+|.|+||+++..|+++++||++++++...+..|..-++++.|+.+-.++++|
T Consensus 316 Ik~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 316 IKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred EEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEec
Confidence 99999965 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcceEE
Q 013282 422 VWDRTYGSLL 431 (446)
Q Consensus 422 ~~D~~~~~~l 431 (446)
+-|.+++.|.
T Consensus 395 sVdqt~KvwE 404 (406)
T KOG0295|consen 395 SVDQTVKVWE 404 (406)
T ss_pred cccceeeeee
Confidence 9999888764
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-33 Score=252.93 Aligned_cols=234 Identities=19% Similarity=0.243 Sum_probs=211.1
Q ss_pred ccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC
Q 013282 188 TQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (446)
Q Consensus 188 ~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~ 265 (446)
....|++|+| +|.+||+|..+|.+++|+..... ..++..|.++|.++.+ +..|. +|++++-|+++.+||..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----~~tl~~HkgPI~slKW--nk~G~-yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----ISTLGQHKGPIFSLKW--NKKGT-YILSGGVDGTTILWDAH 306 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCchh----hhhhhccCCceEEEEE--cCCCC-EEEeccCCccEEEEecc
Confidence 3447999999 69999999999999999985432 3567789999999988 88887 79999999999999999
Q ss_pred cceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEE
Q 013282 266 KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344 (446)
Q Consensus 266 ~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~i 344 (446)
++.....+. |..+-..+.|-. ...|++++.++.|+++-+....++.++.+|.+.|.++.|+|.|.+|+++|.|+|++|
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKI 385 (524)
T ss_pred CceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEe
Confidence 999999998 666657788864 456899999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcceEEEecCCCceEEEEEccCC---------CEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCC
Q 013282 345 WDLRNLSESVAVLKGNLGAIRSIRYTSDG---------RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT 415 (446)
Q Consensus 345 wd~~~~~~~~~~~~~~~~~v~~l~~s~dg---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg 415 (446)
|.+.. ..+...+.+|+..|..+.|+|+| ..|++++.|++|++||+..+.+++.+..|..+|.+++|+|+|
T Consensus 386 Ws~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 386 WSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG 464 (524)
T ss_pred eecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence 99955 78889999999999999999975 478999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCcceE
Q 013282 416 ESLFIGVWDRTYGSL 430 (446)
Q Consensus 416 ~~l~~~~~D~~~~~~ 430 (446)
++||+|+.|+.+-.|
T Consensus 465 ~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIW 479 (524)
T ss_pred cEEEecCCCCeeEec
Confidence 999999999887544
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.1e-33 Score=237.68 Aligned_cols=281 Identities=16% Similarity=0.249 Sum_probs=238.3
Q ss_pred eeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEE
Q 013282 117 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA 196 (446)
Q Consensus 117 f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~ 196 (446)
..++.+.+..+.|||...-++.+.. |..|.+|+.. +.......++||.. +|..+.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~--------Dr~I~LWnv~-gdceN~~~lkgHsg----------------AVM~l~ 97 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGS--------DRAIVLWNVY-GDCENFWVLKGHSG----------------AVMELH 97 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCC--------cceEEEEecc-ccccceeeeccccc----------------eeEeee
Confidence 3445667778888885443433333 4456789853 33444455556533 688898
Q ss_pred e--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee
Q 013282 197 V--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 197 ~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (446)
+ +++.|+++|.|.+|+.||..+++. .+-...|...|+++.. +.-|..++.+++.||++++||+++...++++.
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~---~rk~k~h~~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKR---IRKHKGHTSFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred eccCCCEEEEecCCceEEEEeccccee---eehhccccceeeecCc--cccCCeEEEecCCCceEEEEeecccchhhccc
Confidence 8 999999999999999999998854 4566789999999975 67778789999999999999999999999998
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCC---C
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL---S 351 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~---~ 351 (446)
.+.+++++.|..++..+.+|+-|+.|++||++.+..++.+.||.++|+.+..+|+|.++.+-+.|.++++||+|.. .
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999752 2
Q ss_pred cceEEEecCCC----ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 352 ESVAVLKGNLG----AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 352 ~~~~~~~~~~~----~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
+++..+.+|.- ....++|+|+++.+.+|+.|..+++||..+...+..+.+|.+.|++++|+|...+|.+++.|.++
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 45677776542 34567999999999999999999999999888999999999999999999999999999999875
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.2e-32 Score=244.62 Aligned_cols=269 Identities=20% Similarity=0.286 Sum_probs=224.3
Q ss_pred eeeEEec-ccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCc
Q 013282 134 RNLVWAT-SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (446)
Q Consensus 134 ~~l~~~~-~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~ 210 (446)
--|.|.. +...++..-++.+++|+....... .+.. |.| +|.++.| +|++|++|+.||+
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~---tl~~-------Hkg---------PI~slKWnk~G~yilS~~vD~t 299 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGNLIS---TLGQ-------HKG---------PIFSLKWNKKGTYILSGGVDGT 299 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCchhhh---hhhc-------cCC---------ceEEEEEcCCCCEEEeccCCcc
Confidence 3455664 556677777999999986443221 1221 222 7999999 8899999999999
Q ss_pred EEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCC
Q 013282 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGK 289 (446)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~ 289 (446)
+.+||..++... +.+.-|..+.-.+.| -.+. -|++++.|+.|+++.+....++.++. |..+|+++.|+|.|.
T Consensus 300 tilwd~~~g~~~---q~f~~~s~~~lDVdW--~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~ 372 (524)
T KOG0273|consen 300 TILWDAHTGTVK---QQFEFHSAPALDVDW--QSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS 372 (524)
T ss_pred EEEEeccCceEE---EeeeeccCCccceEE--ecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc
Confidence 999999777433 444445554333444 4444 49999999999999999888988888 999999999999999
Q ss_pred EEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCC---------CEEEEEeCCCcEEEEEccCCCcceEEEecC
Q 013282 290 LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG---------VTFATGNQDKTCRIWDLRNLSESVAVLKGN 360 (446)
Q Consensus 290 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~ 360 (446)
+|+++++|++++||........+.|.+|...|+.+.|+|.| ..+++++.|++|++||+.. +.++++|..|
T Consensus 373 LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH 451 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKH 451 (524)
T ss_pred eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccC
Confidence 99999999999999999999999999999999999999964 4799999999999999965 8999999999
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 361 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 361 ~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
..+|.+++|+|+|+++|+|+.||.|+||++++++..+...+ .+.|..++|+.+|.+|.++..|+.+..+
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEE
Confidence 99999999999999999999999999999999987776664 4569999999999999999999877654
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=262.14 Aligned_cols=237 Identities=19% Similarity=0.276 Sum_probs=213.3
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCC-eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.|.+++. +|.+|+||+.|.++++|.++.+. ...|.....+|...|.++.+ +..+..+|+++|.|+++++|++...
T Consensus 367 ~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 367 AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred heeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee--cccCccEEEEecCCceEEEecCCCc
Confidence 4788884 77799999999999999995443 34455666789999999998 8888889999999999999999762
Q ss_pred ee---eEee-------eCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEe
Q 013282 268 QL---SKHF-------RFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN 337 (446)
Q Consensus 268 ~~---~~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 337 (446)
+. ...+ .|...|+|++++|+.+++++|+.|.+.+||++.....+.+|.||...|.++.|+|..+.+||+|
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc
Confidence 21 1111 2888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCc
Q 013282 338 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTES 417 (446)
Q Consensus 338 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 417 (446)
.|+||+||.+.+ ..++.++.||..+|..+.|-.+|..|++++.||.|++|+++++.+...+-.|...|.+++-+|.+..
T Consensus 525 gD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~ 603 (775)
T KOG0319|consen 525 GDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDM 603 (775)
T ss_pred CCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccce
Confidence 999999999966 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcceE
Q 013282 418 LFIGVWDRTYGSL 430 (446)
Q Consensus 418 l~~~~~D~~~~~~ 430 (446)
+++|+.|+.+-.|
T Consensus 604 ~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 604 FVTGGGDGRIIFW 616 (775)
T ss_pred eEecCCCeEEEEe
Confidence 9999999877555
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=256.55 Aligned_cols=235 Identities=19% Similarity=0.278 Sum_probs=207.8
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.|+++.| .+.+|++|+.|+.|+||++...+ .|.+++.+|..+|..+.| ++.|. .|++++.|+.|++||+++|
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~--s~~g~-~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASF--NNCGT-SFLSASFDRFLKLWDTETG 290 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhc--cccCC-eeeeeecceeeeeeccccc
Confidence 4777777 78999999999999999998744 567899999999999988 89988 5999999999999999999
Q ss_pred eeeEeeeCCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 268 QLSKHFRFPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 268 ~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
+++..+.....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|.+.|..+.|-|+|+.+++.+.|++++||+
T Consensus 291 ~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 291 QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence 999999999999999999988 8889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc-------------------------------ce--------------EEEecCC--CceEEEEEccCCCEEEEE
Q 013282 347 LRNLSE-------------------------------SV--------------AVLKGNL--GAIRSIRYTSDGRYMATA 379 (446)
Q Consensus 347 ~~~~~~-------------------------------~~--------------~~~~~~~--~~v~~l~~s~dg~~l~~~ 379 (446)
.+.... .+ ..+.+|. |--..+.|||||++|++|
T Consensus 371 ~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 371 NRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred cCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 764210 00 1123443 234578999999999999
Q ss_pred eCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCC-CCcEEEEEecCCcceE
Q 013282 380 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-TESLFIGVWDRTYGSL 430 (446)
Q Consensus 380 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~D~~~~~~ 430 (446)
+.+|.+.+||.++-+.+..+..|.+++.++.|+|. ...+|+|+|||.|+.|
T Consensus 451 dsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 451 DSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred cCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 99999999999999999999999999999999995 4579999999999876
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2e-30 Score=239.09 Aligned_cols=281 Identities=21% Similarity=0.334 Sum_probs=230.7
Q ss_pred eeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEE
Q 013282 117 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLA 196 (446)
Q Consensus 117 f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~ 196 (446)
|+.+...+.++.++++.+.++.+. .++.+.+|+..+++... .+.++.. .+..+.
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~--------~~g~i~i~~~~~~~~~~--~~~~~~~----------------~i~~~~ 58 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGS--------GDGTIKVWDLETGELLR--TLKGHTG----------------PVRDVA 58 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEee--------cCcEEEEEEeeCCCcEE--EEecCCc----------------ceeEEE
Confidence 445566777777776644444333 36778999987664322 2222211 466677
Q ss_pred e--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee
Q 013282 197 V--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 197 ~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (446)
+ ++++|++++.+|.|++|++...... ..+..|...+.++.+ ++++. ++++++.++.|++|++.+++....+.
T Consensus 59 ~~~~~~~l~~~~~~~~i~i~~~~~~~~~---~~~~~~~~~i~~~~~--~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 59 ASADGTYLASGSSDKTIRLWDLETGECV---RTLTGHTSYVSSVAF--SPDGR-ILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCcccce---EEEeccCCcEEEEEE--cCCCC-EEEEecCCCeEEEEECCCcEEEEEec
Confidence 7 6679999999999999999875433 334466767888877 78765 67777779999999999888888887
Q ss_pred -CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013282 275 -FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 353 (446)
Q Consensus 275 -~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~ 353 (446)
+...+.++.|+|++.++++++.++.|++||+++++.+..+..|...+.+++|+|+++.+++++.++.|++||++. .+.
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~ 211 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKC 211 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC-Cce
Confidence 888899999999988888888899999999999999999999999999999999999999999999999999976 677
Q ss_pred eEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 354 VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 354 ~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+..+..|...+.+++|+|++.++++++.+|.|++|++.++.....+..|...|.+++|+|++++|++++.|+.+..|
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 78887888899999999999999988889999999999988888888898999999999999999999999876543
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=251.28 Aligned_cols=236 Identities=15% Similarity=0.216 Sum_probs=209.2
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|..+.| +|+.|++|+..|.+.+|+...-.. ..+.+.|..+|.++.+ ++++. .+++|..+|.|++|+.....
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF---EtilQaHDs~Vr~m~w--s~~g~-wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF---ETILQAHDSPVRTMKW--SHNGT-WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeH---HHHhhhhcccceeEEE--ccCCC-EEEEcCCCceEEecccchhh
Confidence 4667777 899999999999999999744322 2345689999999988 89988 69999999999999986555
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
...... |...|++++|+|....|+++++||+|+|||....+.-..+.+|.--|.+++|||...++|+|+.|..|++||.
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 444444 5589999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred cCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCC-CCcEEEEEecCC
Q 013282 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-TESLFIGVWDRT 426 (446)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~D~~ 426 (446)
|+ +.++.++.+|...|..+.|+|++.+|++++.|..+++||+++-+.++.+.+|...|+++.|+|- ..+|.+|++|+.
T Consensus 252 rS-g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 252 RS-GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CC-cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 87 8999999999999999999999999999999999999999988899999999999999999994 456778899998
Q ss_pred cceEEEE
Q 013282 427 YGSLLEY 433 (446)
Q Consensus 427 ~~~~l~~ 433 (446)
+..+...
T Consensus 331 vvh~~v~ 337 (464)
T KOG0284|consen 331 VVHWVVG 337 (464)
T ss_pred eEEEecc
Confidence 8765443
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.1e-31 Score=258.43 Aligned_cols=268 Identities=21% Similarity=0.262 Sum_probs=224.8
Q ss_pred ccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCC
Q 013282 141 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR 218 (446)
Q Consensus 141 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~ 218 (446)
+...++...+..+++|...+.+.....++.||.. .|..++| ++.++++|+.|++|++|++..
T Consensus 171 g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~----------------~v~~~~fs~d~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 171 GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR----------------GVSDVAFSPDGSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred CCeEEEccCCCcEEEeecccccchhhcccccccc----------------ceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence 3333444456677889885554323333344432 5888888 899999999999999999944
Q ss_pred CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecC
Q 013282 219 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDN 297 (446)
Q Consensus 219 ~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 297 (446)
.. .+.+++.+|...|++++| +|.| .++++|+.|++|+|||+++++++..+. |..+|++++|++++++|++++.|
T Consensus 235 ~~--~~~~~l~gH~~~v~~~~f--~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 235 DG--RNLKTLKGHSTYVTSVAF--SPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred CC--eEEEEecCCCCceEEEEe--cCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 43 446788899999999988 9999 589999999999999999999999999 99999999999999999999999
Q ss_pred CcEEEEECCCCc--eEEEecCCCCc--eeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCce---EEEEEc
Q 013282 298 PDGLLVDSMTGK--TIASLCGHLDF--SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI---RSIRYT 370 (446)
Q Consensus 298 ~~i~i~d~~~~~--~~~~~~~~~~~--v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v---~~l~~s 370 (446)
+.|++||+.++. ++..+.++... +++++|+|++.++++++.|+++++||++. ...+..+.+|...+ .+...+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC-CcceeeecccCCcceeEeccccc
Confidence 999999999999 56777776655 99999999999999999999999999976 78888888887753 334557
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCeeEeEeecc-ccCeEEEEEcCCCCcEEEEEe--cCCcceE
Q 013282 371 SDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-FGEISGISFSPDTESLFIGVW--DRTYGSL 430 (446)
Q Consensus 371 ~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~--D~~~~~~ 430 (446)
+.|+++++|+.|+.|++||+.++..+..+.+| ...+..+.++|...+++++++ |+.+..|
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 78999999999999999999999889999999 889999999999999999984 5545443
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-31 Score=248.59 Aligned_cols=275 Identities=14% Similarity=0.148 Sum_probs=238.6
Q ss_pred ccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--
Q 013282 120 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-- 197 (446)
Q Consensus 120 ~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~-- 197 (446)
...+||+..+||.-..++.+-- +|.+.+|+..++.....+.+.. .+|.+..|
T Consensus 12 rSdRVKsVd~HPtePw~la~Ly--------nG~V~IWnyetqtmVksfeV~~------------------~PvRa~kfia 65 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALY--------NGDVQIWNYETQTMVKSFEVSE------------------VPVRAAKFIA 65 (794)
T ss_pred cCCceeeeecCCCCceEEEeee--------cCeeEEEecccceeeeeeeecc------------------cchhhheeee
Confidence 3458999999998777765532 4567899998886655555442 25666666
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-ceeeEeee-C
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFR-F 275 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~ 275 (446)
..+++++|+.|..|+||+.++.... ..+..|...+.++.+ +|... +++++|.|-+|++||.+. ..+.++|. |
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV---~~FeAH~DyIR~iav--HPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH 139 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKV---KTFEAHSDYIRSIAV--HPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGH 139 (794)
T ss_pred ccceEEEecCCceEEEEecccceee---EEeeccccceeeeee--cCCCC-eEEecCCccEEEEeeccCceeeeeEEcCc
Confidence 7799999999999999999988654 677889999999999 89987 799999999999999975 67788888 8
Q ss_pred CCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC--CCCEEEEEeCCCcEEEEEccCCCc
Q 013282 276 PWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP--NGVTFATGNQDKTCRIWDLRNLSE 352 (446)
Q Consensus 276 ~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~sgs~d~~v~iwd~~~~~~ 352 (446)
..-|++++|+| |.+.+++++-|++|++|.+.+..+..++++|...|+|+.+-| +..+|++|+.|.+|+|||.++ ..
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~ 218 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KS 218 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-HH
Confidence 88999999999 788999999999999999999999999999999999999988 447999999999999999976 89
Q ss_pred ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 353 SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 353 ~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
+++++.||...|+.+.|+|.-..+++|+.||+|+||+..+-+....+.-...++.+++-.+.+..+++|...|.+
T Consensus 219 CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 219 CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence 999999999999999999999999999999999999988876666666666789999999988888888777654
No 26
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=234.46 Aligned_cols=242 Identities=18% Similarity=0.247 Sum_probs=214.5
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
-|.|+++ ...++++|+.|++|+|||+.++... .++.+|-..|..+++ |+.-. ++++++.|+.|+.||++..+
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vav--S~rHp-YlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAV--SKRHP-YLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---Eeecchhheeeeeee--cccCc-eEEEecCCCeeEEEechhhh
Confidence 7889988 6789999999999999999888543 566789999999998 77766 79999999999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
.++.+. |-..|.|++.+|.-..|++|+.|.++++||+++...+..+.||..+|.++.+.|-...+++||.|++|++||+
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL 306 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence 999887 8889999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred cCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
+. ++.+.++..|...|++++.+|....+|+++.|. |+-|++..|..+..+.+|.+.|++++...|| ++++|+.+|.+
T Consensus 307 ~a-gkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~ 383 (460)
T KOG0285|consen 307 RA-GKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSI 383 (460)
T ss_pred cc-CceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEE
Confidence 87 888899999999999999999999999999887 9999999999998899999999999999886 55666655443
Q ss_pred ceEEEEecccCceec
Q 013282 428 GSLLEYGRCRNYSYL 442 (446)
Q Consensus 428 ~~~l~~~~~~~~~~l 442 (446)
-+..+..+++++.+
T Consensus 384 -~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 384 -MFWDWKSGHNYQRG 397 (460)
T ss_pred -EEEecCcCcccccc
Confidence 34455556666554
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-30 Score=254.16 Aligned_cols=236 Identities=22% Similarity=0.312 Sum_probs=207.5
Q ss_pred ceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec-Cc
Q 013282 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GK 266 (446)
Q Consensus 190 ~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~-~~ 266 (446)
..|.++.+ +|++|++++.++.+++|++..... .....+.+|...|..++| +|++. ++++++.|++|+|||+ ..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~f--s~d~~-~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAF--SPDGS-YLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEE--CCCCc-EEEEecCCceEEEeeccCC
Confidence 35777777 999999999999999999955541 123444788889999988 99998 7999999999999999 56
Q ss_pred ceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 267 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 267 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
+..++++. |...|++++|+|+++++++|+.|++|+|||+++++++..+.+|.+.|.+++|++++++|++++.|+.|+||
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence 68888887 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCc--ceEEEecCCCc--eEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccC---eEEEEEcCCCCcE
Q 013282 346 DLRNLSE--SVAVLKGNLGA--IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE---ISGISFSPDTESL 418 (446)
Q Consensus 346 d~~~~~~--~~~~~~~~~~~--v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~spdg~~l 418 (446)
|+.+ +. ++..+.++... +++++|+|++.+|+++..|+.+++||+..+..+....+|... +.+..+++.+.++
T Consensus 316 d~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (456)
T KOG0266|consen 316 DLET-GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI 394 (456)
T ss_pred ECCC-CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence 9976 55 46677766555 999999999999999999999999999999999999988764 4445567899999
Q ss_pred EEEEecCCcceE
Q 013282 419 FIGVWDRTYGSL 430 (446)
Q Consensus 419 ~~~~~D~~~~~~ 430 (446)
++|+.|+.+..|
T Consensus 395 ~sg~~d~~v~~~ 406 (456)
T KOG0266|consen 395 YSGSEDGSVYVW 406 (456)
T ss_pred EEEeCCceEEEE
Confidence 999999887655
No 28
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5e-31 Score=221.29 Aligned_cols=235 Identities=20% Similarity=0.234 Sum_probs=204.7
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.+..++| ..+.+++++-||++++||+..+... ...+.+|...|.++++ ++.....++++|.|++|++|+...+
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P--i~~~kEH~~EV~Svdw--n~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP--IHKFKEHKREVYSVDW--NTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcc--hhHHHhhhhheEEecc--ccccceeEEeeccCCceEeecCCCC
Confidence 4777888 6688999999999999997655443 5677889999999988 7777778999999999999999999
Q ss_pred eeeEeee-CCCCeeEEEECC-CCCEEEEEecCCcEEEEECCC-CceEEEecCCCCceeEEEECC-CCCEEEEEeCCCcEE
Q 013282 268 QLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCR 343 (446)
Q Consensus 268 ~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~ 343 (446)
+.+.++. |...|...+|+| .++++++++.|+.+++||++. |+.+. +..|...+.++.|+. +.++++||+.|+.||
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEE
Confidence 9999998 889999999999 788999999999999999985 45444 888999999999998 778999999999999
Q ss_pred EEEccCCCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCCe-eEeEeeccccCeEEEEEcC-CCCcEEE
Q 013282 344 IWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSP-DTESLFI 420 (446)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp-dg~~l~~ 420 (446)
+||+|+...++..+.+|.-+|+.++|||.. ..||+++.|-+++|||...+. .+.+...|..-+.++.||+ ++.++|+
T Consensus 217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS 296 (311)
T ss_pred EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeee
Confidence 999999999999999999999999999976 588999999999999988543 4444556777899999998 5678999
Q ss_pred EEecCCcceE
Q 013282 421 GVWDRTYGSL 430 (446)
Q Consensus 421 ~~~D~~~~~~ 430 (446)
++||..+..+
T Consensus 297 ~gWDe~l~Vw 306 (311)
T KOG0277|consen 297 TGWDELLYVW 306 (311)
T ss_pred cccccceeee
Confidence 9999887655
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=3.5e-30 Score=225.82 Aligned_cols=260 Identities=21% Similarity=0.278 Sum_probs=228.1
Q ss_pred ecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEE
Q 013282 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 225 (446)
Q Consensus 148 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~ 225 (446)
+.|+.|.+||+.++ ...+.+.||+. .|..+++ ...||.+++.|+.|++||+..++..
T Consensus 170 s~DrtikIwDlatg--~LkltltGhi~----------------~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI--- 228 (460)
T KOG0285|consen 170 SADRTIKIWDLATG--QLKLTLTGHIE----------------TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI--- 228 (460)
T ss_pred CCCceeEEEEcccC--eEEEeecchhh----------------eeeeeeecccCceEEEecCCCeeEEEechhhhhH---
Confidence 45889999999999 56677888865 4777777 6789999999999999999888654
Q ss_pred EEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEE
Q 013282 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVD 304 (446)
Q Consensus 226 ~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d 304 (446)
+-..+|-+.|.++++ +|.-. +|++|+.|.++|+||+++...+..+. |..+|..+.+.|-...+++|+.|++|++||
T Consensus 229 R~YhGHlS~V~~L~l--hPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 229 RHYHGHLSGVYCLDL--HPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred HHhccccceeEEEec--cccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 566789999999999 78776 79999999999999999999999998 999999999999888899999999999999
Q ss_pred CCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCe
Q 013282 305 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 384 (446)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~ 384 (446)
++.|+....+..|...|.+++.+|....||+++.|. |+-|++.. +..++.+.+|..-|++++...|| ++++|+.+|.
T Consensus 306 l~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~-g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~ 382 (460)
T KOG0285|consen 306 LRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPE-GEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGS 382 (460)
T ss_pred eccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCc-cchhhccccccceeeeeeeccCc-eEEEcCCceE
Confidence 999999999999999999999999999999999885 99999976 77888899999999999999887 6788999999
Q ss_pred EEEEEcCCCeeEeEee---c-----cccCeEEEEEcCCCCcEEEEEecCCcceEEEEe
Q 013282 385 VHVYDVKSGYEKEQEI---D-----FFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 434 (446)
Q Consensus 385 i~iwd~~~~~~~~~~~---~-----~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~~ 434 (446)
|.+||.++|...+... . ....|.+.+|...|..|++|..|.+|+.+-+-.
T Consensus 383 ~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 383 IMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 9999999986544431 1 224688899999999999999999998876543
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=5e-29 Score=261.87 Aligned_cols=234 Identities=13% Similarity=0.161 Sum_probs=199.0
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.|.+++| .+.+|++|+.||+|++||+.+... ...+.+|.+.|.++.| +|....+|++|+.||+|++||+.++
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~---~~~~~~H~~~V~~l~~--~p~~~~~L~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL---VTEMKEHEKRVWSIDY--SSADPTLLASGSDDGSVKLWSINQG 608 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE---EEEecCCCCCEEEEEE--cCCCCCEEEEEcCCCEEEEEECCCC
Confidence 5777787 478999999999999999987643 3556688899999988 7643347999999999999999999
Q ss_pred eeeEeeeCCCCeeEEEEC-CCCCEEEEEecCCcEEEEECCCCc-eEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 268 QLSKHFRFPWPVNHSSQS-PDGKLLIIVGDNPDGLLVDSMTGK-TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 268 ~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
..+..+.....+.++.|+ +++.+|++|+.|+.|++||+++++ ++..+.+|...|.+++|. ++.+|++++.|++|+||
T Consensus 609 ~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 609 VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred cEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEE
Confidence 988888876789999995 579999999999999999998765 577788999999999997 67899999999999999
Q ss_pred EccCC-----CcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEe-------------eccccCeE
Q 013282 346 DLRNL-----SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-------------IDFFGEIS 407 (446)
Q Consensus 346 d~~~~-----~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~ 407 (446)
|++.. ..++..+.+|...+.+++|+|++++|++|+.|+.|++|+......+..+ ..+...|.
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 99742 3567889999999999999999999999999999999998765433211 12345699
Q ss_pred EEEEcCCCCcEEEEEecCCcceE
Q 013282 408 GISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 408 ~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+++|+|++..|++|+.||++..|
T Consensus 768 ~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 768 SVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999999999999998866
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.5e-31 Score=230.29 Aligned_cols=234 Identities=15% Similarity=0.244 Sum_probs=209.4
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-c
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-Y 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~-~ 267 (446)
+|+.+-+ +-..+++++.|++|++||..++.. ...+.+|...+..+.+ +..|+ ++++++.|-.+++||..+ .
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~--~a~Gk-~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISF--DASGK-YLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEE--ecCcc-EEEecCCccchhheeHHHHH
Confidence 4666655 556778888999999999988864 4667788888888877 88886 799999999999999977 5
Q ss_pred eeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 268 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 268 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
++++... |...|.++.|-|.|.++++++.|.+|+.|++.+|-++.+|.+|...|..++.+.||.++|+++.|.+|++|-
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 5555544 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEecCCCceEEEEEccC---------------CCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEE
Q 013282 347 LRNLSESVAVLKGNLGAIRSIRYTSD---------------GRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF 411 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~~l~~s~d---------------g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 411 (446)
+.+ +.+...+..|..+|-+++|.|. ++++.+++.|++|++||+.++.++.++.+|...|.+++|
T Consensus 264 ~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 264 VAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred ecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence 965 7888899999999999999772 369999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEecCCcceEE
Q 013282 412 SPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 412 spdg~~l~~~~~D~~~~~~l 431 (446)
+|.|+||+++..|+++..|-
T Consensus 343 ~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred cCCCeEEEEEecCCcEEEEE
Confidence 99999999999999987663
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.8e-30 Score=243.66 Aligned_cols=274 Identities=19% Similarity=0.188 Sum_probs=235.6
Q ss_pred eeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCc
Q 013282 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (446)
Q Consensus 133 ~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~ 210 (446)
.|.+.++...-.+....++++++|+..+.+....+... .+.|..| .++++++|..+|.
T Consensus 376 VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--------------------y~l~~~Fvpgd~~Iv~G~k~Ge 435 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--------------------YILASKFVPGDRYIVLGTKNGE 435 (888)
T ss_pred eeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--------------------cEEEEEecCCCceEEEeccCCc
Confidence 34555666666666666899999999888655444322 2444444 8899999999999
Q ss_pred EEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-----cee--------eEeeeCCC
Q 013282 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-----YQL--------SKHFRFPW 277 (446)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~-----~~~--------~~~~~~~~ 277 (446)
+.+|++...... .+...|.+.+..++. +|++. -+++||.|.+|++||..- +.. .+++..+.
T Consensus 436 l~vfdlaS~~l~---Eti~AHdgaIWsi~~--~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 436 LQVFDLASASLV---ETIRAHDGAIWSISL--SPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred eEEEEeehhhhh---hhhhccccceeeeee--cCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 999999876543 455589999999999 89998 599999999999998642 111 13445678
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 013282 278 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL 357 (446)
Q Consensus 278 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~ 357 (446)
.|.|+++||||++|+++--|.++++|-+.+-+...++.||.-||.|+.++|+++.++|||.|+.|+||-+. -+.+...+
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHKS~ 588 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHKSF 588 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999995 48999999
Q ss_pred ecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEEE
Q 013282 358 KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 433 (446)
Q Consensus 358 ~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~ 433 (446)
.+|...|.++.|.|....+.+++.|+.|+-||-.+...++.+.+|...|.+++.+|+|.++++++.|.+++-|-+.
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877544
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2e-31 Score=232.82 Aligned_cols=257 Identities=15% Similarity=0.222 Sum_probs=213.9
Q ss_pred cccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEEeccCCcEEEEEcCCC
Q 013282 140 TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRP 219 (446)
Q Consensus 140 ~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~tg~~dg~i~vw~~~~~ 219 (446)
.....|....|.+|.+||..+. ..+..+.||.. .|.|+.++.+.|++|+.|.+|+|||++++
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtG----------------SVLCLqyd~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTG----------------SVLCLQYDERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cchhhhcccccCceEEeccccH--HHHHhhhcCCC----------------cEEeeeccceEEEecCCCceEEEEeccCC
Confidence 4455566677899999997655 33344555432 59999999999999999999999999988
Q ss_pred CeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee---Eeee-CCCCeeEEEECCCCCEEEEEe
Q 013282 220 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS---KHFR-FPWPVNHSSQSPDGKLLIIVG 295 (446)
Q Consensus 220 ~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~~~~sp~~~~l~~~~ 295 (446)
.. ..++-+|...|-.+.| + +| +++++|.|.++.+||+....-+ +.+. |...|+.+.|+ .+++++++
T Consensus 268 e~---l~tlihHceaVLhlrf--~-ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsAS 337 (499)
T KOG0281|consen 268 EP---LNTLIHHCEAVLHLRF--S-NG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS 337 (499)
T ss_pred ch---hhHHhhhcceeEEEEE--e-CC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEec
Confidence 54 3666688888888877 3 33 7999999999999999765532 2222 78889999986 57999999
Q ss_pred cCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCE
Q 013282 296 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 375 (446)
Q Consensus 296 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 375 (446)
.|.+|++|++.++..++++.+|...|.|+.+ .|+++++|+.|.+|++||+.. +.+++.+.||..-|+++.|. .+.
T Consensus 338 gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd--~kr 412 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFD--NKR 412 (499)
T ss_pred CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeec--Cce
Confidence 9999999999999999999999999998887 689999999999999999965 89999999999999999995 568
Q ss_pred EEEEeCCCeEEEEEcCCCee---------EeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 376 MATAEPADFVHVYDVKSGYE---------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 376 l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
+++|..||+|+|||+.++.. +..+..|.+.|..+.|. ...+++++.|.+|-.|-
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 99999999999999987643 34455688999999997 45788889998887663
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.1e-29 Score=236.03 Aligned_cols=234 Identities=15% Similarity=0.241 Sum_probs=208.7
Q ss_pred ceEEEEEe--CCcEEEEeccC-CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc
Q 013282 190 TQVSTLAV--KDKLLVAGGFQ-GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 190 ~~v~~l~~--~~~~l~tg~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
.+|.++++ .|.+||.|+.. |.+-||++...... .-.++|...+++++. +|+|+ ++++|+.||.|+|||..+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV---lKQQgH~~~i~~l~Y--SpDgq-~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV---LKQQGHSDRITSLAY--SPDGQ-LIATGAEDGKVKVWNTQS 381 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeecccee---eeccccccceeeEEE--CCCCc-EEEeccCCCcEEEEeccC
Confidence 37999999 49999999876 89999999877533 334578888999988 99998 799999999999999999
Q ss_pred ceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCC-CCceeEEEECCCCCEEEEEeCCC-cEE
Q 013282 267 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH-LDFSFASAWHPNGVTFATGNQDK-TCR 343 (446)
Q Consensus 267 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~sgs~d~-~v~ 343 (446)
+-|+.+|. |...|+.+.|+..|+.+++++-||+|+.||+...+..+++... .....|++..|.|.++.+|+.|. .|.
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 99999999 9999999999999999999999999999999999999998853 34567899999999999999986 699
Q ss_pred EEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEe
Q 013282 344 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 423 (446)
+|++++ ++.+..+.||.++|.+++|+|+|..||+|+.|.+|++||+-..........+...+..++|+|+|+-|+++..
T Consensus 462 vWS~qT-GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 462 VWSVQT-GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred EEEeec-CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEe
Confidence 999966 9999999999999999999999999999999999999999776555556667888999999999999999999
Q ss_pred cCCcceE
Q 013282 424 DRTYGSL 430 (446)
Q Consensus 424 D~~~~~~ 430 (446)
||.+..|
T Consensus 541 dgqItf~ 547 (893)
T KOG0291|consen 541 DGQITFF 547 (893)
T ss_pred cceEEEE
Confidence 9887544
No 35
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.5e-29 Score=222.16 Aligned_cols=281 Identities=15% Similarity=0.159 Sum_probs=229.0
Q ss_pred cceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe-----CC
Q 013282 125 KSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-----KD 199 (446)
Q Consensus 125 ~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~-----~~ 199 (446)
..+..|.+.-..+-+.+++.+...-|+.+++|+.. | ...+...||.. +|.++++ ..
T Consensus 99 l~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-G--k~~~~~~Ght~----------------~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLK-G--KSIKTIVGHTG----------------PIKSVAWVIKNSSS 159 (423)
T ss_pred cccccchhhhhhhcccCceEEEeecCCeeEEEecC-C--ceEEEEecCCc----------------ceeeeEEEecCCcc
Confidence 34556666666666668888988999999999863 3 44555566544 3665665 23
Q ss_pred cEEEEeccCCcEEEEEcCCCCee-eEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc------------
Q 013282 200 KLLVAGGFQGELICKHLDRPGVS-FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK------------ 266 (446)
Q Consensus 200 ~~l~tg~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~------------ 266 (446)
..+++++.|.++++|.++.+... .+.....+|...|.++.. .++|. .+++|+.|.+|.||+.++
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~ 236 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV--DSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNR 236 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEe--cCCCC-eEEeecccceeeecccCCCccccccccchh
Confidence 46999999999999999876532 222333489999999998 78887 699999999999999321
Q ss_pred -------------ceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCE
Q 013282 267 -------------YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 332 (446)
Q Consensus 267 -------------~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 332 (446)
+.++.++. |..+|.++.|++ ...+.+++.|.+|+.||+.+++.+..+.+ ...+++++.+|..++
T Consensus 237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKL 314 (423)
T ss_pred hhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccce
Confidence 12344555 899999999987 77899999999999999999999988874 467899999999999
Q ss_pred EEEEeCCCcEEEEEccCCCc--ceEEEecCCCceEEEEEccCCC-EEEEEeCCCeEEEEEcCCCe-eEeEeeccccCeEE
Q 013282 333 FATGNQDKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISG 408 (446)
Q Consensus 333 l~sgs~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~ 408 (446)
||+|+.|..+|+||.|+... ..+++.+|.+.|.++.|+|... .|++|+.|+++++||+++.+ ++..+.+|...|.+
T Consensus 315 l~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~ 394 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS 394 (423)
T ss_pred eeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE
Confidence 99999999999999987543 4577889999999999999764 67899999999999999987 88999999999999
Q ss_pred EEEcCCCCcEEEEEecCCcceE
Q 013282 409 ISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 409 ~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+.|.. +..|++|+.|.++.+.
T Consensus 395 vdW~~-~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 395 VDWNE-GGLIVSGGADNKLRIF 415 (423)
T ss_pred EeccC-CceEEeccCcceEEEe
Confidence 99986 5689999999887654
No 36
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=229.59 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=199.9
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|++++| ||++|++|+..|.|+|||+.+... .+.+..|..++..+.| +|.+..+|++|+.|+.+++||+.+..
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i---LR~~~ah~apv~~~~f--~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI---LRQLYAHQAPVHVTKF--SPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHH---HHHHhhccCceeEEEe--cccCCeEEEecCCCceEEEEEcCCcE
Confidence 4888888 899999999999999999644222 3667789999999988 89998899999999999999999888
Q ss_pred eeEeee-CCCCeeEEEECCC-CCEEEEEecCCcEEEEECCCC-ceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 269 LSKHFR-FPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
....+. |...|.|.+|+|. +..+++|+.||.|++||+++. ..+.++. |..+|..+.+-|.|..+|+++.. .|++|
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVW 222 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVW 222 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEE
Confidence 754555 9999999999994 557899999999999999976 6666665 89999999999999999998754 79999
Q ss_pred EccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecC
Q 013282 346 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 425 (446)
Q Consensus 346 d~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~ 425 (446)
|+-.+++.+..+..|...|+|+++..+++.|++|+.|+.|++||+.+.+.+... ...++|.+++.+|+++.+++|..||
T Consensus 223 Dl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 223 DLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEecccc
Confidence 997667777777779999999999999999999999999999997776655554 4788999999999999999999998
Q ss_pred Ccce
Q 013282 426 TYGS 429 (446)
Q Consensus 426 ~~~~ 429 (446)
.+..
T Consensus 302 lv~~ 305 (487)
T KOG0310|consen 302 LVSI 305 (487)
T ss_pred eeee
Confidence 6543
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-31 Score=233.12 Aligned_cols=224 Identities=15% Similarity=0.185 Sum_probs=202.1
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (446)
.|+|+.++...+++|..|.+|+|||.+.. .|...+.+|.+.|-++.+ + ..++++||.|.+|++||+++++++
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqy----d-~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQY----D-ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeec----c-ceEEEecCCCceEEEEeccCCchh
Confidence 69999999999999999999999998765 666888899999999987 2 338999999999999999999999
Q ss_pred Eeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc---eEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 271 KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK---TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 271 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
.++- |...|..+.|+ ..++++++.|.+|.+||+.+.. +.+.+.||...|+.+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 8876 88899999997 4789999999999999998664 335578999999999994 56999999999999999
Q ss_pred ccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCC
Q 013282 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
+.+ ...++++.+|...|.|+.+ .|+++++|+.|.+|++||+..|.++..+.+|..-|.++.|. .+.+++|..||+
T Consensus 347 ~st-~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk 421 (499)
T KOG0281|consen 347 TST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK 421 (499)
T ss_pred ccc-eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce
Confidence 955 8999999999999998877 48999999999999999999999999999999999999997 578999999999
Q ss_pred cceEE
Q 013282 427 YGSLL 431 (446)
Q Consensus 427 ~~~~l 431 (446)
++.|-
T Consensus 422 ikvWd 426 (499)
T KOG0281|consen 422 IKVWD 426 (499)
T ss_pred EEEEe
Confidence 99884
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=237.04 Aligned_cols=235 Identities=16% Similarity=0.239 Sum_probs=211.3
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
+|.++.+ ...+++++-.+|.|.||+.++.... +.+.-..-+|.+..| -+..+ .+++|+.|..|++|+..+++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmV---ksfeV~~~PvRa~kf--iaRkn-Wiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV---KSFEVSEVPVRAAKF--IARKN-WIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceee---eeeeecccchhhhee--eeccc-eEEEecCCceEEEEecccce
Confidence 5777777 6789999999999999999887543 444455667777777 34434 79999999999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-CceEEEecCCCCceeEEEECC-CCCEEEEEeCCCcEEEE
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIW 345 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~iw 345 (446)
.+..|. |+.-|.|++.||...+++++++|-.|++||... -.+.+++.||+..|++++|+| |.+.+|+++.|+||++|
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 999999 999999999999999999999999999999985 477889999999999999999 88999999999999999
Q ss_pred EccCCCcceEEEecCCCceEEEEEccCC--CEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEe
Q 013282 346 DLRNLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 346 d~~~~~~~~~~~~~~~~~v~~l~~s~dg--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 423 (446)
.+.. ..+..++.+|...|+++.+-+-| .+|++|+.|.+|+|||.++..+++++.+|...|+.+.|+|.=..+++|+.
T Consensus 169 slgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 169 SLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred EcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC
Confidence 9965 78889999999999999998865 69999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEE
Q 013282 424 DRTYGSLLE 432 (446)
Q Consensus 424 D~~~~~~l~ 432 (446)
||+++.|-.
T Consensus 248 DGTvriWhs 256 (794)
T KOG0276|consen 248 DGTVRIWNS 256 (794)
T ss_pred CccEEEecC
Confidence 999998853
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.3e-28 Score=258.67 Aligned_cols=236 Identities=13% Similarity=0.130 Sum_probs=198.4
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCC----e-eeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----V-SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~----~-~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd 263 (446)
.|++++| ++++||+|+.||.|+||++.... . ....... .+...+.++.+ ++....+|++++.||+|++||
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~--~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICW--NSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEe--ccCCCCEEEEEeCCCeEEEEE
Confidence 6889998 88999999999999999975321 0 0111112 22345666665 665444799999999999999
Q ss_pred cCcceeeEeee-CCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEEC-CCCCEEEEEeCCC
Q 013282 264 MGKYQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH-PNGVTFATGNQDK 340 (446)
Q Consensus 264 ~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~sgs~d~ 340 (446)
+.+++.+..+. |...|.+++|+| ++.+|++|+.|+.|++||++++..+..+..+ ..+.+++|+ ++|.+|++|+.|+
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg 640 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADH 640 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCC
Confidence 99998888887 889999999997 7899999999999999999999998888754 678999995 4799999999999
Q ss_pred cEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC------eeEeEeeccccCeEEEEEcCC
Q 013282 341 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG------YEKEQEIDFFGEISGISFSPD 414 (446)
Q Consensus 341 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~spd 414 (446)
+|++||++....++..+.+|...|++++|. ++.+|++++.|+.|++||+..+ ..+..+.+|...+..++|+|+
T Consensus 641 ~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 641 KVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 719 (793)
T ss_pred eEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence 999999987555678888999999999997 6789999999999999999743 466778889999999999999
Q ss_pred CCcEEEEEecCCcceEE
Q 013282 415 TESLFIGVWDRTYGSLL 431 (446)
Q Consensus 415 g~~l~~~~~D~~~~~~l 431 (446)
+.+|++|+.|+.+..|-
T Consensus 720 ~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 720 DGYIATGSETNEVFVYH 736 (793)
T ss_pred CCEEEEEeCCCEEEEEE
Confidence 99999999999887664
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=211.26 Aligned_cols=232 Identities=19% Similarity=0.269 Sum_probs=200.5
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
+|.+++| +|..|++|+.|+++.+|++....... .....+|.+.|..+.+ +|....+|++++.|.+|++||+.+++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w--~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCW--DPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhhee--CCCCCcceEEecCCceEEEEEeccCc
Confidence 6888999 99999999999999999998764332 2344567777766666 78777789999999999999999999
Q ss_pred eeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc---------------------------------------
Q 013282 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK--------------------------------------- 309 (446)
Q Consensus 269 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~--------------------------------------- 309 (446)
+...+.....-..+.|+|+|.++++++.+..|.+.|.++.+
T Consensus 99 ~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 99 CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 99999877777788999999999999988888887776543
Q ss_pred --eEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEE
Q 013282 310 --TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV 387 (446)
Q Consensus 310 --~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~i 387 (446)
++..+++|...+.|+.|+|+|++||+|+.|..+.+||+.. --+++.+.-+.-+|+.|.||.||++||+|+.|..|-|
T Consensus 179 Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 179 LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence 2334467999999999999999999999999999999965 6788899989999999999999999999999999999
Q ss_pred EEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 388 YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 388 wd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
=++.+|..+.++. +.++...++|+|...+||-++.|..-
T Consensus 258 A~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 258 AEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred EecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCC
Confidence 9999998887765 88999999999999999988887654
No 41
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.6e-28 Score=236.27 Aligned_cols=222 Identities=14% Similarity=0.165 Sum_probs=183.1
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCe----eeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd 263 (446)
.|.+++| ++++|++|+.||+|++|++...+. ......+.+|...|.++.| +|.+..+|++++.|++|+|||
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f--~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF--HPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe--CcCCCCEEEEEeCCCEEEEEE
Confidence 6899988 568999999999999999976532 1123456788899999888 898766899999999999999
Q ss_pred cCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCc-eeEEEECCCCCEEEEEe----
Q 013282 264 MGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF-SFASAWHPNGVTFATGN---- 337 (446)
Q Consensus 264 ~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~sgs---- 337 (446)
+.+++.+..+. |...|.+++|+|+|++|++++.|+.|++||+++++.+..+.+|.+. +..+.|.|++..+++++
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s 234 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKS 234 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCC
Confidence 99999888887 8889999999999999999999999999999999999999988765 45678999887777654
Q ss_pred CCCcEEEEEccCCCcceEEEecC-CCceEEEEEccCCCEEEEEe-CCCeEEEEEcCCCeeEeEeec-cccCeEEEEEcCC
Q 013282 338 QDKTCRIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEID-FFGEISGISFSPD 414 (446)
Q Consensus 338 ~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~spd 414 (446)
.|++|++||+++...++.....+ ...+....|++++++|++|+ .|+.|++||+.++........ +..++.+++|.|.
T Consensus 235 ~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 235 QQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 47899999998866666655433 34566678999999998887 599999999999876655432 3456788889884
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=8.6e-28 Score=220.58 Aligned_cols=234 Identities=20% Similarity=0.259 Sum_probs=193.8
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.|.++++ ..-+++||+.|+.|.+|.=. .. ........|...|+++.+ +|+|. +|++++.||+|.+||-.++
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGP--PF-KFk~s~r~HskFV~~VRy--sPDG~-~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGP--PF-KFKSSFREHSKFVNCVRY--SPDGS-RFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCC--Ce-eeeecccccccceeeEEE--CCCCC-eEEEecCCccEEEEcCCCc
Confidence 5888888 55789999999999998632 22 223556788999999998 99998 6999999999999999999
Q ss_pred eeeEeee----CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEe-----------------------------
Q 013282 268 QLSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL----------------------------- 314 (446)
Q Consensus 268 ~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~----------------------------- 314 (446)
+.+..+. |.+.|.+++|+||++.+++++.|.+++|||+.+++++.++
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 9998887 8999999999999999999999999999999887766544
Q ss_pred --------------cCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCC-----------------------------
Q 013282 315 --------------CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS----------------------------- 351 (446)
Q Consensus 315 --------------~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~----------------------------- 351 (446)
.||...|++++.+|++++|++|+.||.|.-|+.....
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence 5788999999999999999999999999999853110
Q ss_pred --------------------------------------------------------------------------------
Q 013282 352 -------------------------------------------------------------------------------- 351 (446)
Q Consensus 352 -------------------------------------------------------------------------------- 351 (446)
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG 462 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG 462 (603)
T ss_pred CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence
Q ss_pred ---------------cceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec-cccCeEEEEEcCCC
Q 013282 352 ---------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDT 415 (446)
Q Consensus 352 ---------------~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~spdg 415 (446)
.....+..|.++|+++++|||+.+||++...+.|.+||+.+.+.....-. |.+.|.+++|+|+.
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 00001134667899999999999999999999999999998765433333 88999999999999
Q ss_pred CcEEEEEecCCcceE
Q 013282 416 ESLFIGVWDRTYGSL 430 (446)
Q Consensus 416 ~~l~~~~~D~~~~~~ 430 (446)
.++|+|+-|.++-.+
T Consensus 543 ~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIY 557 (603)
T ss_pred eEEEeccccceEEEE
Confidence 999999999877544
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-28 Score=208.75 Aligned_cols=234 Identities=17% Similarity=0.167 Sum_probs=206.1
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
+++-+.+ +|.+|.+++.|.+..||-..+++. .-+..+|.+.|.++++ +.+.+ .+++|+.|.++++||+++|+
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---lGty~GHtGavW~~Di--d~~s~-~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---LGTYDGHTGAVWCCDI--DWDSK-HLITGSADQTAKLWDVETGK 85 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCce---eeeecCCCceEEEEEe--cCCcc-eeeeccccceeEEEEcCCCc
Confidence 5777777 899999999999999998766654 3677899999999999 55554 79999999999999999999
Q ss_pred eeEeeeCCCCeeEEEECCCCCEEEEEec-----CCcEEEEECC-------CCceEEEecCCCCceeEEEECCCCCEEEEE
Q 013282 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGD-----NPDGLLVDSM-------TGKTIASLCGHLDFSFASAWHPNGVTFATG 336 (446)
Q Consensus 269 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg 336 (446)
++..++.+.+|..+.|+++|++++++++ .+.|.++|++ ...++..+..+...++.+-|.|-+.+|++|
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 9999999999999999999999988754 5789999998 455688888888999999999999999999
Q ss_pred eCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee---------------------
Q 013282 337 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE--------------------- 395 (446)
Q Consensus 337 s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~--------------------- 395 (446)
..||.|.+||+++..+.+.....|...|+.++++||..++++++.|.+-++||+.+...
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccce
Confidence 99999999999986677777788999999999999999999999999999999875432
Q ss_pred ----------------------------------EeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 396 ----------------------------------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 396 ----------------------------------~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+..+.+|.++|++++|+|+|+..++|+.||.++..
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 23345799999999999999999999999988644
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=7.6e-28 Score=221.80 Aligned_cols=233 Identities=25% Similarity=0.386 Sum_probs=203.2
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
+|.++++ ++++|++|+.+|.|++|++...... .....|...+..+.+ +|++. .+++++.+|.|++|++.+++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---~~~~~~~~~i~~~~~--~~~~~-~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---RTLKGHTGPVRDVAA--SADGT-YLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE---EEEecCCcceeEEEE--CCCCC-EEEEEcCCCeEEEEEcCccc
Confidence 6899998 6799999999999999999876532 344566666766666 88886 68889899999999999877
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
....+. +...+.++.|+|+++++++++.++.|.+||+++++.+..+..|...+.+++|+|++.++++++.++.|++||+
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 777776 6778999999999888888888999999999999999999999999999999999999999988999999999
Q ss_pred cCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
+. .+.+..+..|...+.+++|+|+++.+++++.++.|++||++++..+..+..|...+.++.|+|++.++++++.|+.+
T Consensus 165 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 165 RT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred cc-cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 75 67788888888899999999999999999999999999999988888777888899999999998888877768776
Q ss_pred ceE
Q 013282 428 GSL 430 (446)
Q Consensus 428 ~~~ 430 (446)
..+
T Consensus 244 ~i~ 246 (289)
T cd00200 244 RVW 246 (289)
T ss_pred EEE
Confidence 544
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.3e-27 Score=219.42 Aligned_cols=231 Identities=20% Similarity=0.286 Sum_probs=200.9
Q ss_pred eEEEEEe--CCcEEEEeccC----CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec
Q 013282 191 QVSTLAV--KDKLLVAGGFQ----GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~ 264 (446)
+|..++| ++++|++.|.. |.+.+||.-+. .-.+.+|+..+++++| -|.....+++|+.|++|.+|.-
T Consensus 105 ~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S-----vGei~GhSr~ins~~~--KpsRPfRi~T~sdDn~v~ffeG 177 (603)
T KOG0318|consen 105 PIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS-----VGEITGHSRRINSVDF--KPSRPFRIATGSDDNTVAFFEG 177 (603)
T ss_pred ccccceeCCCCcEEEEEecCccceeEEEEecCCCc-----cceeeccceeEeeeec--cCCCceEEEeccCCCeEEEeeC
Confidence 6899999 77777776643 45666765433 2445689999999999 7888889999999999999999
Q ss_pred CcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEec---CCCCceeEEEECCCCCEEEEEeCCC
Q 013282 265 GKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNGVTFATGNQDK 340 (446)
Q Consensus 265 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~sgs~d~ 340 (446)
...+...+++ |..-|+|+.|+|||+++++++.||+|.+||-.+|..+..|. +|.+.|++++|+||+..|+|++.|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 8888888888 88889999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred cEEEEEccCCCcceEEEecCC---CceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCc
Q 013282 341 TCRIWDLRNLSESVAVLKGNL---GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTES 417 (446)
Q Consensus 341 ~v~iwd~~~~~~~~~~~~~~~---~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 417 (446)
+++|||+.. .++++++.... ..-..+-|. ...|++.+.+|+|.+++...+..+..+.+|...|+++..+|++++
T Consensus 258 t~KIWdVs~-~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 258 TIKIWDVST-NSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred eEEEEEeec-cceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 999999965 78888776432 223345565 558999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcceEE
Q 013282 418 LFIGVWDRTYGSLL 431 (446)
Q Consensus 418 l~~~~~D~~~~~~l 431 (446)
|++|+.||.|..|.
T Consensus 335 i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 335 IYSGSYDGHINSWD 348 (603)
T ss_pred EEeeccCceEEEEe
Confidence 99999999998875
No 46
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.8e-28 Score=219.74 Aligned_cols=304 Identities=14% Similarity=0.180 Sum_probs=223.8
Q ss_pred eeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCce-EEEec----CCCCCCCCCCCCCccccCc
Q 013282 114 YYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRS-QVLNV----SGHVAPSEKHPGSLLEGFT 188 (446)
Q Consensus 114 ~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~-~~~~~----~g~~~~~~~~~g~~~~~~~ 188 (446)
|-....|..++.++++.+. .+..+..+.+++|..|+..+++.. .++.- .-|..|...+. .-+
T Consensus 135 ~~~~~~H~~s~~~vals~d--------~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-----~~h 201 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD--------DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-----KGH 201 (479)
T ss_pred ceeeccccCcceEEEeecc--------ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-----ccc
Confidence 5555556556655544443 233344455778999999999754 22221 11222211111 012
Q ss_pred cceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc
Q 013282 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 189 ~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
...+.++++ +++|||+|+.|..|.||+..+.... +.+.+|.+.|.+++|. .|...+++++.|++|++|+++.
T Consensus 202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv---~~~~ghr~~V~~L~fr---~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV---KVFKGHRGAVSSLAFR---KGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cceeEEEEEcCCCcEEEecCCCceEEEecCcccchh---hcccccccceeeeeee---cCccceeeeecCCceEEEehhH
Confidence 236777777 9999999999999999999888654 4577999999999984 4444699999999999999988
Q ss_pred ceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 267 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 267 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
...+.++- |+..|..+....-++.+-+|+.|.++++|++.. .....+.+|.+.+-|++|-. ...|++||.+|.|.+|
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALW 353 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEe
Confidence 77776655 999999999887778777888999999999943 33445678899999999975 4579999999999999
Q ss_pred EccCCCcceEEEe-cC-----------CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee---EeEeeccccCeEEEE
Q 013282 346 DLRNLSESVAVLK-GN-----------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE---KEQEIDFFGEISGIS 410 (446)
Q Consensus 346 d~~~~~~~~~~~~-~~-----------~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~ 410 (446)
++.+ .+++.+.. +| ..+|++|+..|...++|+|+.+|.|++|-+..+.. +.......+-|++++
T Consensus 354 s~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 354 SLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLA 432 (479)
T ss_pred eecc-cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEE
Confidence 9966 66665543 22 12799999999999999999999999999988732 222223678899999
Q ss_pred EcCCCCcEEEE-EecCCcceEEEEecccCc
Q 013282 411 FSPDTESLFIG-VWDRTYGSLLEYGRCRNY 439 (446)
Q Consensus 411 ~spdg~~l~~~-~~D~~~~~~l~~~~~~~~ 439 (446)
|+++|++|++| +.....|.|.......+.
T Consensus 433 f~~sgk~ivagiGkEhRlGRW~~~k~~~~~ 462 (479)
T KOG0299|consen 433 FSNSGKRIVAGIGKEHRLGRWWCLKSGKNS 462 (479)
T ss_pred EccCCCEEEEecccccccceeeEeeccccc
Confidence 99999977766 556667777665554443
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.8e-28 Score=209.51 Aligned_cols=233 Identities=17% Similarity=0.203 Sum_probs=197.6
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|.++.| +|.+||+||.|..|.+|++...... .-...+|++.|..+.+ .++++ .+++++.|.+|+.||+++|+
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN--~~~lkgHsgAVM~l~~--~~d~s-~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN--FWVLKGHSGAVMELHG--MRDGS-HILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccccc--eeeeccccceeEeeee--ccCCC-EEEEecCCceEEEEecccce
Confidence 6888888 9999999999999999997655433 2445589999998888 89988 69999999999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 269 LSKHFR-FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
.++.++ |..-|+.+.-+.-| .++.++++|++++|||+++...++++. ..-.++++.|...+..+.+|+-|+.|++||
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd 202 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD 202 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence 999998 88878888744333 356778899999999999988888775 456799999999999999999999999999
Q ss_pred ccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC----eeEeEeeccc----cCeEEEEEcCCCCcE
Q 013282 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFF----GEISGISFSPDTESL 418 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~----~~v~~~~~spdg~~l 418 (446)
+|. .....++.||..+|+.+..+|+|.++.+-+.|.++++||++-. +++..+.+|. .....++|+|++.++
T Consensus 203 ~r~-~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i 281 (338)
T KOG0265|consen 203 LRK-NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKI 281 (338)
T ss_pred ccc-CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcc
Confidence 987 7889999999999999999999999999999999999998743 3455555543 245678999999999
Q ss_pred EEEEecCCcceE
Q 013282 419 FIGVWDRTYGSL 430 (446)
Q Consensus 419 ~~~~~D~~~~~~ 430 (446)
.+|+.|+.+-.|
T Consensus 282 ~ags~dr~vyvw 293 (338)
T KOG0265|consen 282 TAGSADRFVYVW 293 (338)
T ss_pred ccccccceEEEe
Confidence 988777665444
No 48
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-28 Score=229.71 Aligned_cols=275 Identities=17% Similarity=0.231 Sum_probs=232.1
Q ss_pred cceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccC
Q 013282 131 FQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQ 208 (446)
Q Consensus 131 ~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~d 208 (446)
|.+..+-|+ +.+.|..+....+++|+..++....+..+.. ..|+++.| +|++|++|..+
T Consensus 178 fY~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~------------------~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGE------------------ELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCC------------------CceEEEEECCCCCEEEEeecC
Confidence 334445566 6677777788899999999998666665531 15999999 89999999999
Q ss_pred CcEEEEEcCCCCeeeEEEEeec-CCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEe-ee-CCCCeeEEEEC
Q 013282 209 GELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH-FR-FPWPVNHSSQS 285 (446)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~-~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~~s 285 (446)
|.|.|||....... ..+.+ |...|.++++ . + ..+.+|+.++.|..+|++..+.... +. |...|..+.|+
T Consensus 239 g~v~iwD~~~~k~~---~~~~~~h~~rvg~laW--~--~-~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKT---RTLRGSHASRVGSLAW--N--S-SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CeEEEEehhhcccc---ccccCCcCceeEEEec--c--C-ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 99999999877543 34445 8889999987 4 2 3799999999999999987665444 54 88999999999
Q ss_pred CCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC-CCCEEEEEe--CCCcEEEEEccCCCcceEEEecCCC
Q 013282 286 PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGN--QDKTCRIWDLRNLSESVAVLKGNLG 362 (446)
Q Consensus 286 p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs--~d~~v~iwd~~~~~~~~~~~~~~~~ 362 (446)
+++++||+|+.|+.+.|||.....++..+..|.+.|.+++|+| ...+||+|+ .|++|++||... +..+..+.. ..
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdt-gs 388 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVDT-GS 388 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEeccccc-CC
Confidence 9999999999999999999988889999999999999999999 678899876 499999999965 777777665 56
Q ss_pred ceEEEEEccCCCEEEEEe--CCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEEEe
Q 013282 363 AIRSIRYTSDGRYMATAE--PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 434 (446)
Q Consensus 363 ~v~~l~~s~dg~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~~ 434 (446)
.|++|.|++..+.|+++. .++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.+++-|--|.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 799999999998777654 567899999999999999999999999999999999999999999998775554
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.5e-27 Score=200.97 Aligned_cols=234 Identities=15% Similarity=0.164 Sum_probs=198.6
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEE-EeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC-
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSR-TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG- 265 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~- 265 (446)
++..+++ .|..||+||.|..|++|++..+....|.. +-..|...|..+++ +|.|+ +|+++|.|+++.||.-.
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw--sp~g~-~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW--SPHGR-YLASASFDATVVIWKKED 92 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee--cCCCc-EEEEeeccceEEEeecCC
Confidence 5888888 25589999999999999998644444433 33568888999887 99998 79999999999999865
Q ss_pred -cceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC---ceEEEecCCCCceeEEEECCCCCEEEEEeCCC
Q 013282 266 -KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG---KTIASLCGHLDFSFASAWHPNGVTFATGNQDK 340 (446)
Q Consensus 266 -~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~ 340 (446)
.++++..+. |...|.|++|+++|++||+++.|..|-||.+..+ .++..|+.|...|..+.|||...+|+++|.|.
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 467788887 9999999999999999999999999999998744 46788999999999999999999999999999
Q ss_pred cEEEEEccC--CCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcE
Q 013282 341 TCRIWDLRN--LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESL 418 (446)
Q Consensus 341 ~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l 418 (446)
+|++|.-.. .-.+++++.+|...|.+++|+|.|..|++++.|++|+||-..+.- ..-|..++..+.|. ...|
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccce
Confidence 999998752 246889999999999999999999999999999999999866431 12367889999999 4579
Q ss_pred EEEEecCCcceEEEE
Q 013282 419 FIGVWDRTYGSLLEY 433 (446)
Q Consensus 419 ~~~~~D~~~~~~l~~ 433 (446)
++++.|+.+..+.+.
T Consensus 247 aS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKES 261 (312)
T ss_pred EeccCCCEEEEEEec
Confidence 999999888765544
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.7e-27 Score=198.75 Aligned_cols=285 Identities=15% Similarity=0.175 Sum_probs=220.3
Q ss_pred eeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEE
Q 013282 115 YEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVST 194 (446)
Q Consensus 115 ~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~ 194 (446)
....+++.++...+.|+....++.+ ...+..|++|+..++..-..... +...+...|.+
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAs-------cg~Dk~vriw~~~~~~s~~ck~v--------------ld~~hkrsVRs 66 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILAS-------CGTDKAVRIWSTSSGDSWTCKTV--------------LDDGHKRSVRS 66 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEe-------ecCCceEEEEecCCCCcEEEEEe--------------ccccchheeee
Confidence 3444556667777777764332222 12356789999875433211111 11122236999
Q ss_pred EEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc---cee
Q 013282 195 LAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQL 269 (446)
Q Consensus 195 l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~---~~~ 269 (446)
++| .|++|++|++|+++.||.-.... ..|..++.+|...|.+++| +++|. +|++++.|++|.||.+.. .++
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaw--s~sG~-~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAW--SASGN-YLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEE--cCCCC-EEEEeeCCCeEEEEEecCCCcEEE
Confidence 999 99999999999999999876444 3567888899999999988 99998 799999999999999863 556
Q ss_pred eEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECC---CCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 270 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM---TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 270 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
...++ |...|..+.|+|...+|++++.|.+|++|.-. .-.+++++.+|...|.+++|+|.|..|++++.|++|+||
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 66777 88899999999999999999999999999876 336789999999999999999999999999999999999
Q ss_pred EccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe------e-EeEeeccccCeEEEEEcCC-CCc
Q 013282 346 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY------E-KEQEIDFFGEISGISFSPD-TES 417 (446)
Q Consensus 346 d~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~------~-~~~~~~~~~~v~~~~~spd-g~~ 417 (446)
-.... .-.-|+.++..+.|. + ..||+++.|+.|++|--...- . ......|...|+++.|.|. ..+
T Consensus 223 ~~~~~-----~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 223 RLYTD-----LSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred eeccC-----cchhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCc
Confidence 87521 112367889999998 4 479999999999999765421 1 1123357789999999994 678
Q ss_pred EEEEEecCCcceEE
Q 013282 418 LFIGVWDRTYGSLL 431 (446)
Q Consensus 418 l~~~~~D~~~~~~l 431 (446)
|++|+.||.++.|.
T Consensus 296 L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 296 LASGGDDGIVNFWE 309 (312)
T ss_pred eeecCCCceEEEEE
Confidence 99999999887664
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=204.04 Aligned_cols=229 Identities=15% Similarity=0.116 Sum_probs=200.8
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
+|.++.+ +|+|.+++|.|.+|++|+.-.+ .+.++..+|...|..++. +.++. .|++|+.|..|.+||+.+|+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~--s~Dns-kf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAAL--SSDNS-KFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccc--ccccc-ccccCCCCceEEEEEcccCe
Confidence 6888888 9999999999999999998766 556888899988888877 66666 59999999999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCC--CceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT--GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
..+.+. |...|+.++|+.+...+++|+.|.++++||.++ .++++.+....+.|.++..+ +..+++|+.||++|.|
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTY 170 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEE
Confidence 999999 999999999999999999999999999999985 46888888888999999884 6689999999999999
Q ss_pred EccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccC--eEEEEEcCCCCcEEEEEe
Q 013282 346 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE--ISGISFSPDTESLFIGVW 423 (446)
Q Consensus 346 d~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~spdg~~l~~~~~ 423 (446)
|+|. +....-..+| +|++++|+++|+.++.++.|++|++.|-.+|+.+..+.+|... -...+++.....+++|+.
T Consensus 171 diR~-G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSE 247 (307)
T KOG0316|consen 171 DIRK-GTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE 247 (307)
T ss_pred Eeec-ceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccC
Confidence 9987 6655555554 8999999999999999999999999999999999999998764 334567777788999999
Q ss_pred cCCcceE
Q 013282 424 DRTYGSL 430 (446)
Q Consensus 424 D~~~~~~ 430 (446)
||.+--|
T Consensus 248 DG~Vy~w 254 (307)
T KOG0316|consen 248 DGKVYFW 254 (307)
T ss_pred CceEEEE
Confidence 9886543
No 52
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=6.9e-27 Score=229.67 Aligned_cols=221 Identities=12% Similarity=0.086 Sum_probs=178.2
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCee-----eEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEE
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS-----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~-----~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iw 262 (446)
.|.+++| ++++|++|+.||+|+||++...... .....+.+|...|.++.| +|++..+|++++.|++|++|
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf--~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW--NPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE--CCCCCeEEEEEeCCCeEEEE
Confidence 5999999 3689999999999999999764321 112345678888999888 99988777899999999999
Q ss_pred ecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeE-----EEECCCCCEEEEEe
Q 013282 263 DMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA-----SAWHPNGVTFATGN 337 (446)
Q Consensus 263 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~-----~~~~p~~~~l~sgs 337 (446)
|+.+++....+.+...|.+++|+|+|++|++++.|+.|+|||+++++.+..+.+|.+.+.+ ..|++++.+|++++
T Consensus 154 Dl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 154 DIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred ECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE
Confidence 9999988877777788999999999999999999999999999999999999999876543 34568889999988
Q ss_pred CCC----cEEEEEccCCCcceEEEec--CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee--ccccCeEEE
Q 013282 338 QDK----TCRIWDLRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI--DFFGEISGI 409 (446)
Q Consensus 338 ~d~----~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~ 409 (446)
.++ +|+|||+++...++..+.. +.+.+......++|.++++|+.|+.|++|++..+. +..+. .+..++.++
T Consensus 234 ~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~ 312 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSF 312 (568)
T ss_pred cCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccce
Confidence 774 7999999976777766543 33444444445678999999999999999998774 22222 245678999
Q ss_pred EEcCC
Q 013282 410 SFSPD 414 (446)
Q Consensus 410 ~~spd 414 (446)
+|.|.
T Consensus 313 ~f~Pk 317 (568)
T PTZ00420 313 GFLPK 317 (568)
T ss_pred EEccc
Confidence 99996
No 53
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.6e-27 Score=229.85 Aligned_cols=236 Identities=15% Similarity=0.124 Sum_probs=182.4
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCe----------eeEEEEeecCCCceeeEEEEeCC-CCCeEEEEEeCCCcE
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGV----------SFCSRTTYDDNAITNAVEIYGSP-SGAVHFTASNNDCGV 259 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~----------~~~~~~~~~~~~~v~~i~~~~s~-~~~~~l~s~s~dg~v 259 (446)
.++..++++..+++++.+.....|+...+.. ......+.+|.+.|.++.| +| ++. +|++|+.|++|
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f--sP~d~~-~LaSgS~DgtI 100 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF--NPFDPQ-KLFTASEDGTI 100 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE--cCCCCC-EEEEEeCCCEE
Confidence 3445555655566666665555565432211 1111245688999999988 88 555 79999999999
Q ss_pred EEEecCcce-------eeEeee-CCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCC
Q 013282 260 RDFDMGKYQ-------LSKHFR-FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG 330 (446)
Q Consensus 260 ~iwd~~~~~-------~~~~~~-~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~ 330 (446)
++||+.++. ++..+. |...|.+++|+|++ ++|++++.|+.|+|||+.+++.+..+.+|...|.+++|+|+|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997642 344555 88999999999975 689999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEecCCCc-eEEEEEccCCCEEEEEe----CCCeEEEEEcCCCeeEeEeec--cc
Q 013282 331 VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA-IRSIRYTSDGRYMATAE----PADFVHVYDVKSGYEKEQEID--FF 403 (446)
Q Consensus 331 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~s~dg~~l~~~~----~dg~i~iwd~~~~~~~~~~~~--~~ 403 (446)
.+|++|+.|++|+|||+++ ++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+++......... ..
T Consensus 181 ~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~ 259 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259 (493)
T ss_pred CEEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence 9999999999999999987 6778888888764 45678999887777654 478999999987653333322 33
Q ss_pred cCeEEEEEcCCCCcEEEEEe-cCCcceE
Q 013282 404 GEISGISFSPDTESLFIGVW-DRTYGSL 430 (446)
Q Consensus 404 ~~v~~~~~spdg~~l~~~~~-D~~~~~~ 430 (446)
..+..+.|+|++.+|++++. |+.+..|
T Consensus 260 ~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 260 SALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred CceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 45666789999999998874 8877655
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=7.2e-28 Score=229.27 Aligned_cols=264 Identities=16% Similarity=0.182 Sum_probs=216.1
Q ss_pred ccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe---CCcEEEEeccCCcEEEEEcC
Q 013282 141 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLD 217 (446)
Q Consensus 141 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~---~~~~l~tg~~dg~i~vw~~~ 217 (446)
....+....+.++.+++..+.+. .-.+.|. ...|..|.+ +.++|+.++..+.+++|++.
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i--~k~ivG~----------------ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~ 354 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTI--VKQIVGY----------------NDEILDMKFLGPEESHLAVATNSPELRLYTLP 354 (775)
T ss_pred cCceEEEEccceEEEEEccccEE--ehhhcCC----------------chhheeeeecCCccceEEEEeCCCceEEEecC
Confidence 34445556677777886655432 1122221 115888888 56999999999999999877
Q ss_pred CCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee----eEeee-CCCCeeEEEECCCC-CEE
Q 013282 218 RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL----SKHFR-FPWPVNHSSQSPDG-KLL 291 (446)
Q Consensus 218 ~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~----~~~~~-~~~~v~~~~~sp~~-~~l 291 (446)
+. .| .+..+|...|.+++. ..+| .+|++|+.|.++++|.++.+.. +.... |...|.+++++..+ .+|
T Consensus 355 ~~---~c-~ii~GH~e~vlSL~~--~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 355 TS---YC-QIIPGHTEAVLSLDV--WSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred CC---ce-EEEeCchhheeeeee--cccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE
Confidence 65 33 378899999999985 4555 4899999999999998854332 22333 88899999997744 478
Q ss_pred EEEecCCcEEEEECCCCce-----EE----EecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCC
Q 013282 292 IIVGDNPDGLLVDSMTGKT-----IA----SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 362 (446)
Q Consensus 292 ~~~~~d~~i~i~d~~~~~~-----~~----~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~ 362 (446)
++++.|.++++|++...+. +. ....|...|++++++|+.+++||||+|++.+||++.. .....++.+|..
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTR 506 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCcc
Confidence 9999999999999975221 11 2236999999999999999999999999999999974 888999999999
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 363 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 363 ~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.|.++.|+|..+.||++|.|++|+||.+.+..++.++.+|...|..+.|-.+|..|++|+.||-++.|
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998766
No 55
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=219.31 Aligned_cols=276 Identities=16% Similarity=0.132 Sum_probs=208.3
Q ss_pred CeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCC
Q 013282 143 HDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG 220 (446)
Q Consensus 143 ~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~ 220 (446)
..+..+-|+.|+.||...-... +..--.+.|+. ..+|.++.+ .|..|++.+.....+|+|-....
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas--~~~fr~l~P~E-----------~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDAS--MRSFRQLQPCE-----------THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eeeeccccceEEEEeccccccc--chhhhccCccc-----------ccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 3444455788999997443211 11111222322 235777777 77777777777788888865544
Q ss_pred eeeEE---------EEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce-eeEeee------CCCCeeEEEE
Q 013282 221 VSFCS---------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR------FPWPVNHSSQ 284 (446)
Q Consensus 221 ~~~~~---------~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~------~~~~v~~~~~ 284 (446)
...|. ..+.+|...+++.+| +|..+..|++++.||++|||++...+ .+..+. ..-+++.++|
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 33222 234577777788777 99998899999999999999997533 333333 2346889999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCc--eE-EEecCCCC--ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEec
Q 013282 285 SPDGKLLIIVGDNPDGLLVDSMTGK--TI-ASLCGHLD--FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG 359 (446)
Q Consensus 285 sp~~~~l~~~~~d~~i~i~d~~~~~--~~-~~~~~~~~--~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~ 359 (446)
+|+|+++|+|+.||.|.+|+..+.. +. ..-.+|.. .|+|++|+++|++|++-+.|+++++||+|+..+++.+..+
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 9999999999999999999975432 22 23346877 8999999999999999999999999999998888887765
Q ss_pred C--CCceEEEEEccCCCEEEEEeC------CCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 360 N--LGAIRSIRYTSDGRYMATAEP------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 360 ~--~~~v~~l~~s~dg~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
- .-+-+.++|||+.++|++|+. .|.+.+||..+...++.+.-....|..+.|+|.=+.|++|+.||++..++
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 3 335678999999999999864 46899999999888887776778899999999988899999999987776
Q ss_pred EE
Q 013282 432 EY 433 (446)
Q Consensus 432 ~~ 433 (446)
.-
T Consensus 486 dp 487 (641)
T KOG0772|consen 486 DP 487 (641)
T ss_pred Cc
Confidence 43
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=232.81 Aligned_cols=256 Identities=18% Similarity=0.244 Sum_probs=221.6
Q ss_pred cCeEEEecCCeEEEEecCCCCceEEEe-cCCCCCCCCCCCCCccccCccceEEEEEeC--CcEEEEeccCCcEEEEEcCC
Q 013282 142 KHDVYLMSHFSVIHWSSLTSSRSQVLN-VSGHVAPSEKHPGSLLEGFTQTQVSTLAVK--DKLLVAGGFQGELICKHLDR 218 (446)
Q Consensus 142 ~~~v~~~~~~~i~~w~~~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~--~~~l~tg~~dg~i~vw~~~~ 218 (446)
.+.+....+..|.+|+..++ ..+.. +.||.. .|.++++. +.+|++|+.|.+++|||..+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g----------------~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFG----------------GVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred CeEEecCCCceeEEeecccc--eEEEeeccCCCC----------------CceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 34445556777889998777 44444 677644 58999995 99999999999999999888
Q ss_pred CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecC
Q 013282 219 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDN 297 (446)
Q Consensus 219 ~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 297 (446)
+ .|..++.+|...+.++.+ . ...+++|+.|.+|++|+++++.++..+. |..+|+++.++ +.++++|+.|
T Consensus 281 g---~C~~~l~gh~stv~~~~~--~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 281 G---ECTHSLQGHTSSVRCLTI--D---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred C---cEEEEecCCCceEEEEEc--c---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 7 677888899999999876 2 3368889999999999999999999999 99999999997 8899999999
Q ss_pred CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEE
Q 013282 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 377 (446)
Q Consensus 298 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 377 (446)
++|.+||+.++++++.+.+|...|+++.+.+. ..+++|+.|++|++||+++..+++.++.+|..-+..+.+ .+++|+
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lv 427 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLV 427 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeE
Confidence 99999999999999999999999999988765 899999999999999998733899999999998877655 577999
Q ss_pred EEeCCCeEEEEEcCCCeeEeEeec-cccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 378 TAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 378 ~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+++.|+.|++||..++.+++.+.+ |.+.|..+++. ...+++++.|++++.+
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLW 479 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEE
Confidence 999999999999999999999888 67888888887 4678888899988766
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.5e-28 Score=236.13 Aligned_cols=234 Identities=14% Similarity=0.227 Sum_probs=209.4
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
+|..++| ..-+++++-..|.|++||.+-+.. ...+.+|.++|..+.| +|.+. +|++|+.|-.|++|+..+.+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---i~rFdeHdGpVRgv~F--H~~qp-lFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---IDRFDEHDGPVRGVDF--HPTQP-LFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhH---HhhhhccCCccceeee--cCCCC-eEEecCCccEEEEEecccce
Confidence 6777888 678999999999999999977643 3566789999999998 89988 89999999999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
++.++. |-.-|..+.|++.-.+++++++|.+|+||+..+++++..+.||...|.|.+|+|....++++|.|.+||+||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 988887 8999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC-------C---------------------cceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC--eeEe
Q 013282 348 RNL-------S---------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG--YEKE 397 (446)
Q Consensus 348 ~~~-------~---------------------~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~--~~~~ 397 (446)
.-. + -..+.+.||...|+-++|+|.-..+++|+.|..|++|.+... ..+-
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence 421 1 012456789999999999999999999999999999988754 3566
Q ss_pred EeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 398 QEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 398 ~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+..+|.+.|+++-|+|....+++.+.|++++.|
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 778899999999999999999999999998876
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.6e-27 Score=194.95 Aligned_cols=255 Identities=13% Similarity=0.112 Sum_probs=209.3
Q ss_pred ccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCC
Q 013282 141 SKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR 218 (446)
Q Consensus 141 ~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~ 218 (446)
++..+...++..+++|+++.+.....+.-.|+ .|..++. +...+++||.|..|.+||+++
T Consensus 29 GnY~ltcGsdrtvrLWNp~rg~liktYsghG~------------------EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 29 GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH------------------EVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred CCEEEEcCCCceEEeecccccceeeeecCCCc------------------eeeeccccccccccccCCCCceEEEEEccc
Confidence 34445555677889999988854444433333 4666655 889999999999999999999
Q ss_pred CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc--ceeeEeee-CCCCeeEEEECCCCCEEEEEe
Q 013282 219 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--YQLSKHFR-FPWPVNHSSQSPDGKLLIIVG 295 (446)
Q Consensus 219 ~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~ 295 (446)
++.. +.+.+|.+.|+.+.| +.... ++++|+.|.++++||.++ .++++.+. ....|.++.++ +..+++|+
T Consensus 91 Gkv~---Rr~rgH~aqVNtV~f--NeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 91 GKVD---RRFRGHLAQVNTVRF--NEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred Ceee---eecccccceeeEEEe--cCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 8654 667899999999998 66655 899999999999999965 56777777 67789999885 57899999
Q ss_pred cCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceE--EEEEccCC
Q 013282 296 DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR--SIRYTSDG 373 (446)
Q Consensus 296 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~--~l~~s~dg 373 (446)
.||+++.||++.|+...-.-+| +|++++|+|+++..+.++.|+++++.|-.+ ++.+..+++|...-. ..+++...
T Consensus 163 ~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred cCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccch-hHHHHHhcccccceeeeeeeecccc
Confidence 9999999999999877666554 899999999999999999999999999855 899999999976443 34566667
Q ss_pred CEEEEEeCCCeEEEEEcCCCeeEeEeeccccC-eEEEEEcCCCCcEEEEEec
Q 013282 374 RYMATAEPADFVHVYDVKSGYEKEQEIDFFGE-ISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 374 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~spdg~~l~~~~~D 424 (446)
.++++|+.||.|++||+.....+..+..+... |.+++++|.-..++++..-
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 89999999999999999999888888777776 8999999988777777543
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-27 Score=230.24 Aligned_cols=274 Identities=14% Similarity=0.153 Sum_probs=227.6
Q ss_pred ccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--
Q 013282 120 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-- 197 (446)
Q Consensus 120 ~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~-- 197 (446)
....+|...+||.-..++.+- ..+.|..||-.-+.. +-.+.+| .| +|..++|
T Consensus 8 kSsRvKglsFHP~rPwILtsl--------HsG~IQlWDYRM~tl--i~rFdeH-------dG---------pVRgv~FH~ 61 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSL--------HSGVIQLWDYRMGTL--IDRFDEH-------DG---------PVRGVDFHP 61 (1202)
T ss_pred ccccccceecCCCCCEEEEee--------cCceeeeehhhhhhH--Hhhhhcc-------CC---------ccceeeecC
Confidence 356899999999876665543 346678999765532 2223332 22 6888888
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 276 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (446)
...++|+||.|-+|+||+..+. .|..++.+|-..|..+.| ++.-. .|+++|.|.+|+||+..+++++..+. |.
T Consensus 62 ~qplFVSGGDDykIkVWnYk~r---rclftL~GHlDYVRt~~F--HheyP-WIlSASDDQTIrIWNwqsr~~iavltGHn 135 (1202)
T KOG0292|consen 62 TQPLFVSGGDDYKIKVWNYKTR---RCLFTLLGHLDYVRTVFF--HHEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHN 135 (1202)
T ss_pred CCCeEEecCCccEEEEEecccc---eehhhhccccceeEEeec--cCCCc-eEEEccCCCeEEEEeccCCceEEEEecCc
Confidence 7899999999999999999876 556777899999999887 77776 69999999999999999999999998 99
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCC--------C-------------------c--eEEEecCCCCceeEEEEC
Q 013282 277 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT--------G-------------------K--TIASLCGHLDFSFASAWH 327 (446)
Q Consensus 277 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~--------~-------------------~--~~~~~~~~~~~v~~~~~~ 327 (446)
.-|.|..|+|...++++++-|.+|++||+.. + . ..+.+.||...|+-++|+
T Consensus 136 HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 136 HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 9999999999999999999999999999842 1 0 123467899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCc-ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCe
Q 013282 328 PNGVTFATGNQDKTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI 406 (446)
Q Consensus 328 p~~~~l~sgs~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 406 (446)
|.-.+|++|+.|..|++|-+..... .+.+..+|.+.|+++-|+|...++++.+.|++|+|||+...+.++++..-...-
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRF 295 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRF 295 (1202)
T ss_pred CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeE
Confidence 9999999999999999999954221 345678999999999999999999999999999999999998999988777889
Q ss_pred EEEEEcCCCCcEEEEEecCC
Q 013282 407 SGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 407 ~~~~~spdg~~l~~~~~D~~ 426 (446)
..++-+|..+++++ +.|+-
T Consensus 296 W~laahP~lNLfAA-gHDsG 314 (1202)
T KOG0292|consen 296 WILAAHPELNLFAA-GHDSG 314 (1202)
T ss_pred EEEEecCCcceeee-ecCCc
Confidence 99999999886654 45543
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=206.68 Aligned_cols=206 Identities=20% Similarity=0.325 Sum_probs=174.3
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCC---------------CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEE
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDR---------------PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS 253 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~---------------~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~ 253 (446)
++.+-+| ||.++++|+.|..|+|.++.. .......+++..|...|+.+.| +|... +|++|
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F--HPre~-ILiS~ 190 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF--HPRET-ILISG 190 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee--cchhh-eEEec
Confidence 4555555 999999999999999999861 1112346778899999999998 89877 89999
Q ss_pred eCCCcEEEEecCcceeeEe---eeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEe---cCCCCceeEEEEC
Q 013282 254 NNDCGVRDFDMGKYQLSKH---FRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL---CGHLDFSFASAWH 327 (446)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~ 327 (446)
+.|++|++||+......+. |+...+|.++.|+|.|.+|++|++...+++||+.+-++...- .+|.+.|+++.++
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys 270 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS 270 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEec
Confidence 9999999999976554443 446778999999999999999999999999999998876554 3699999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCcceEEEe-cCCC-ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee
Q 013282 328 PNGVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLG-AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 400 (446)
Q Consensus 328 p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~-~~~~-~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~ 400 (446)
+.|++.+||+.||.|+|||=-. .+++.++. +|.+ .|++..|..+|+||++.+.|..|++|.+.+++.+..+.
T Consensus 271 ~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 271 STGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred CCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 9999999999999999999855 77887775 4543 69999999999999999999999999999887655443
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=7.3e-28 Score=219.14 Aligned_cols=250 Identities=15% Similarity=0.220 Sum_probs=204.7
Q ss_pred ccccceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCc
Q 013282 109 KKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFT 188 (446)
Q Consensus 109 ~~~~~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~ 188 (446)
........|.+|+..|.+..+-+...+|+.+.+. |+.|++|++.. ....+-.+.||..
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gm-------D~~vklW~vy~-~~~~lrtf~gH~k-------------- 259 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGM-------DGLVKLWNVYD-DRRCLRTFKGHRK-------------- 259 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCC-------CceEEEEEEec-Ccceehhhhcchh--------------
Confidence 3345677888888888888777754455443322 56678999876 3455666777655
Q ss_pred cceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc
Q 013282 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 189 ~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
+|.+++| +|..+++++.|+.|++||++++....+. .....++++.+ +|++.+.|++|+.|+.|+.||+++
T Consensus 260 --~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f----~~~~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 260 --PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF----HLDKVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRS 331 (503)
T ss_pred --hhhhhhccccCCeeeeeecceeeeeeccccceEEEEE----ecCCCceeeec--CCCCCcEEEEecCCCcEEEEeccc
Confidence 4888888 8999999999999999999998654332 23456788888 999977999999999999999999
Q ss_pred ceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEE--------------------------------
Q 013282 267 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS-------------------------------- 313 (446)
Q Consensus 267 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~-------------------------------- 313 (446)
++.++.+. |-++|..+.|-++|+.+++++++++++||+.+.+-++..
T Consensus 332 ~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~i 411 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAI 411 (503)
T ss_pred hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEE
Confidence 99999988 888999999999999999999999999999876533211
Q ss_pred --------------ecCCC--CceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCC-CEE
Q 013282 314 --------------LCGHL--DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYM 376 (446)
Q Consensus 314 --------------~~~~~--~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l 376 (446)
++||. +....+.|||||.+|++|+.||.+.+||.++ .+.+..+++|.+++..+.|+|.. ..+
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSKV 490 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCccee
Confidence 13554 4566789999999999999999999999965 88999999999999999999975 589
Q ss_pred EEEeCCCeEEEEE
Q 013282 377 ATAEPADFVHVYD 389 (446)
Q Consensus 377 ~~~~~dg~i~iwd 389 (446)
|+++-+|.|++|+
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999996
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=4.3e-28 Score=216.51 Aligned_cols=267 Identities=15% Similarity=0.129 Sum_probs=218.9
Q ss_pred Eecc-cCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEE
Q 013282 138 WATS-KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICK 214 (446)
Q Consensus 138 ~~~~-~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw 214 (446)
|... ........|..|.+|+....+....-.+.|... .|.++.+ ++..+++++.|+.+++|
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g----------------~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG----------------NITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCC----------------CcceeeecCCCceEEeecCCCceeee
Confidence 4443 233334557789999988876444444554433 4888888 88999999999999999
Q ss_pred EcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEE
Q 013282 215 HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIV 294 (446)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 294 (446)
+++.... ..++.+|...|+++.+. .... .+++|+.|.+|++||+....+.+++-....++.++.+ ...+++|
T Consensus 247 nvd~~r~---~~TLsGHtdkVt~ak~~--~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~Sg 318 (459)
T KOG0288|consen 247 NVDSLRL---RHTLSGHTDKVTAAKFK--LSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISG 318 (459)
T ss_pred eccchhh---hhhhcccccceeeehhh--cccc-ceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeec
Confidence 9987744 35667899999999984 3333 4999999999999999999999888877888888887 5678889
Q ss_pred ecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecC----CCceEEEEEc
Q 013282 295 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN----LGAIRSIRYT 370 (446)
Q Consensus 295 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~l~~s 370 (446)
..|++|++||++++.++..+..+. .|+++..+++|..+.+++.|.++.+.|++. ....+++.+. ....+.+.||
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEEC
Confidence 999999999999999999988665 899999999999999999999999999987 6666666532 1247889999
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCeeEeEeecccc--CeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 371 SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG--EISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 371 ~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
|++.|+|+|+.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+..|
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999998887776444 59999999999999999887766544
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.8e-27 Score=211.00 Aligned_cols=236 Identities=19% Similarity=0.280 Sum_probs=200.9
Q ss_pred cccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEE
Q 013282 184 LEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (446)
Q Consensus 184 ~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~i 261 (446)
++..+-..++++.. ....+++||.|..+.++|...+.. ..++.+|...|+.+.+ +|+.. .+++++.|..|+|
T Consensus 214 LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---l~~~~Gh~kki~~v~~--~~~~~-~v~~aSad~~i~v 287 (506)
T KOG0289|consen 214 LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---LATLKGHTKKITSVKF--HKDLD-TVITASADEIIRV 287 (506)
T ss_pred eeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhh---hhhccCcceEEEEEEe--ccchh-heeecCCcceEEe
Confidence 33344446888887 348999999999999999877744 4677889888888887 88877 5889999999999
Q ss_pred EecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecC--CCCceeEEEECCCCCEEEEEeC
Q 013282 262 FDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQ 338 (446)
Q Consensus 262 wd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~sgs~ 338 (446)
|............ |..+|+.+..+|.|.+|++++.++++.+.|++++..+..... ..-.+++.+|||||.+|.+|..
T Consensus 288 ws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 288 WSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred eccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC
Confidence 9987766555444 999999999999999999999999999999999998877653 2245899999999999999999
Q ss_pred CCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec-cccCeEEEEEcCCCCc
Q 013282 339 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTES 417 (446)
Q Consensus 339 d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~spdg~~ 417 (446)
|+.|+|||+.+ ...+..|.+|.++|..|+|+.+|-|||+++.|+.|++||++..+....+.. ...++.++.|.+.|.+
T Consensus 368 d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 368 DGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred CceEEEEEcCC-ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe
Confidence 99999999976 668899999999999999999999999999999999999998876665553 2347999999999999
Q ss_pred EEEEEecCC
Q 013282 418 LFIGVWDRT 426 (446)
Q Consensus 418 l~~~~~D~~ 426 (446)
|++++.|-.
T Consensus 447 L~~~g~~l~ 455 (506)
T KOG0289|consen 447 LGIAGSDLQ 455 (506)
T ss_pred EEeecceeE
Confidence 999966543
No 64
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-25 Score=194.34 Aligned_cols=271 Identities=14% Similarity=0.159 Sum_probs=212.6
Q ss_pred ccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCC
Q 013282 120 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKD 199 (446)
Q Consensus 120 ~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~ 199 (446)
...++.+..++.....++.+ +.+.++.++|..+++....++.... | ..+.++....
T Consensus 13 ~~~~i~sl~fs~~G~~lits--------s~dDsl~LYd~~~g~~~~ti~skky--------G--------~~~~~Fth~~ 68 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITS--------SEDDSLRLYDSLSGKQVKTINSKKY--------G--------VDLACFTHHS 68 (311)
T ss_pred CCCceeEEEecCCCCEEEEe--------cCCCeEEEEEcCCCceeeEeecccc--------c--------ccEEEEecCC
Confidence 34456666666554444433 3455779999999977776665521 1 1233444466
Q ss_pred cEEEEecc--CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCC
Q 013282 200 KLLVAGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 277 (446)
Q Consensus 200 ~~l~tg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (446)
+.++.++. |.+|+.-++.+++ ..+.+.+|...|+.+.+ +|-+. .|++++.|++|++||++..++...+....
T Consensus 69 ~~~i~sStk~d~tIryLsl~dNk---ylRYF~GH~~~V~sL~~--sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~ 142 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHDNK---YLRYFPGHKKRVNSLSV--SPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSG 142 (311)
T ss_pred ceEEEccCCCCCceEEEEeecCc---eEEEcCCCCceEEEEEe--cCCCC-eEEecccCCeEEeeEecCCCCceEEecCC
Confidence 67777766 8899999998874 45889999999999999 89886 69999999999999999888877776333
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCC--CceEEEec---CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCc
Q 013282 278 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMT--GKTIASLC---GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 352 (446)
Q Consensus 278 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~---~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~ 352 (446)
-..++|.|+|-.+|++.....|+|||++. ..+...+. +-....+.+.|+|+|++|+.++..+.+++.|.-. +.
T Consensus 143 -~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~ 220 (311)
T KOG1446|consen 143 -RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GT 220 (311)
T ss_pred -CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-Cc
Confidence 34578999999999999888999999984 33444443 3456789999999999999999999999999966 77
Q ss_pred ceEEEecCCCce---EEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec-cccCeEEEEEcCCCCcEEEEE
Q 013282 353 SVAVLKGNLGAI---RSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 353 ~~~~~~~~~~~v---~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~ 422 (446)
.+.++..+...- -+.+|+|||+++++|+.||.|++|++.++..+..+.+ +.+++.++.|+|.--.+++++
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence 888887765432 5788999999999999999999999999999999988 689999999999755555544
No 65
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=9.6e-26 Score=221.61 Aligned_cols=220 Identities=12% Similarity=0.053 Sum_probs=173.5
Q ss_pred eccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce--------eeEeee-C
Q 013282 205 GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--------LSKHFR-F 275 (446)
Q Consensus 205 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~--------~~~~~~-~ 275 (446)
|+..|.|++|+..... ....+.+|.+.|.+++| +|+...+|++|+.||+|++||+.++. ++..+. |
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 7788999999986542 34566789999999988 88744489999999999999997542 223444 8
Q ss_pred CCCeeEEEECCCCCEE-EEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013282 276 PWPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 354 (446)
Q Consensus 276 ~~~v~~~~~sp~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~ 354 (446)
...|.+++|+|++..+ ++++.|+.|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|++|+|||++. +..+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i 202 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIA 202 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEE
Confidence 8899999999988764 788999999999999998887776 667899999999999999999999999999987 7778
Q ss_pred EEEecCCCceEE-----EEEccCCCEEEEEeCCC----eEEEEEcCC-CeeEeEeec--cccCeEEEEEcCCCCcEEEEE
Q 013282 355 AVLKGNLGAIRS-----IRYTSDGRYMATAEPAD----FVHVYDVKS-GYEKEQEID--FFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 355 ~~~~~~~~~v~~-----l~~s~dg~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~ 422 (446)
..+.+|.+.+.+ ..|++++.+|++++.++ .|+|||+++ +..+..... +.+.+......++|.++++|.
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 889999876543 34568999999888774 799999996 344433322 223344444456688889999
Q ss_pred ecCCcceEE
Q 013282 423 WDRTYGSLL 431 (446)
Q Consensus 423 ~D~~~~~~l 431 (446)
.|+++..+-
T Consensus 283 GD~tIr~~e 291 (568)
T PTZ00420 283 GDGNCRYYQ 291 (568)
T ss_pred CCCeEEEEE
Confidence 999887654
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.1e-27 Score=196.83 Aligned_cols=219 Identities=17% Similarity=0.212 Sum_probs=182.5
Q ss_pred CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC-cceeeEeee-CCCCeeEEEEC
Q 013282 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQLSKHFR-FPWPVNHSSQS 285 (446)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~-~~~~v~~~~~s 285 (446)
.|.+.|-++..++.......+ .-...+-.++ |+++...++++++.||++++||+. ...++..++ |...|.++.|+
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSY-DTEDGLFDVA--WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWN 113 (311)
T ss_pred CceEEEEecCCCCCeEEEEee-ecccceeEee--ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccc
Confidence 588888888644333222222 2223344444 488888899999999999999974 345777777 99999999999
Q ss_pred C-CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCc
Q 013282 286 P-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 363 (446)
Q Consensus 286 p-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~ 363 (446)
+ .+..+++++.|++|++|+..-++.+.++.+|...|+..+|+| .+++++++|.|+++++||+|..++.+. +..|...
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~E 192 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSE 192 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccce
Confidence 9 666788899999999999999999999999999999999999 789999999999999999998777666 8899999
Q ss_pred eEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCe-eEeEeeccccCeEEEEEcCC-CCcEEEEEecCCcceE
Q 013282 364 IRSIRYTS-DGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPD-TESLFIGVWDRTYGSL 430 (446)
Q Consensus 364 v~~l~~s~-dg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~spd-g~~l~~~~~D~~~~~~ 430 (446)
+.++.|+. +.+.|++|+.|+.|++||+++-+ ++..+.+|.-.|..+.|||. ...|++++.|-+++.|
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEec
Confidence 99999998 45688999999999999999854 56777889999999999995 4578899999998766
No 67
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=5.5e-27 Score=212.22 Aligned_cols=230 Identities=17% Similarity=0.201 Sum_probs=186.2
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEE-------EEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee-
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCS-------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL- 269 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~-------~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~- 269 (446)
+...+++++..+.|.|||..+....... ..+.+|...-..+. |++...-.+++++.|++|++||+.....
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~gls--Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLS--WNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccc--cccccceeEeeccCCCcEEEEeccccccC
Confidence 7888999999999999998765432211 13445555434444 4777777899999999999999965332
Q ss_pred ------eEeee-CCCCeeEEEECC-CCCEEEEEecCCcEEEEECC--CCceEEEecCCCCceeEEEECC-CCCEEEEEeC
Q 013282 270 ------SKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSM--TGKTIASLCGHLDFSFASAWHP-NGVTFATGNQ 338 (446)
Q Consensus 270 ------~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~ 338 (446)
...+. |...|..++|+| ...+|+++++|+.+.|||+| +.++.+..++|.+.|.|++|+| ++.+|||||.
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~ 293 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA 293 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC
Confidence 23344 899999999999 66688999999999999999 5667777889999999999999 7889999999
Q ss_pred CCcEEEEEccCCCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCC--------------eeEeEeeccc
Q 013282 339 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSG--------------YEKEQEIDFF 403 (446)
Q Consensus 339 d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~ 403 (446)
|++|++||+|+...++.++.+|...|..|.|+|+. ..||+++.|+.+.|||+..- +.++.-.+|.
T Consensus 294 D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 294 DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT 373 (422)
T ss_pred CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc
Confidence 99999999999999999999999999999999976 58899999999999998642 1234555788
Q ss_pred cCeEEEEEcCCCCcEEEEEecCCcce
Q 013282 404 GEISGISFSPDTESLFIGVWDRTYGS 429 (446)
Q Consensus 404 ~~v~~~~~spdg~~l~~~~~D~~~~~ 429 (446)
+.|+.+.|+|...+++++..+-.+..
T Consensus 374 ~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 374 AKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred cccccccCCCCCCeEEEEecCCceEE
Confidence 89999999999888665555444433
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.9e-27 Score=209.14 Aligned_cols=265 Identities=15% Similarity=0.136 Sum_probs=207.9
Q ss_pred CeEEEecCCeEEEEecCCCCc-eEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCC
Q 013282 143 HDVYLMSHFSVIHWSSLTSSR-SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP 219 (446)
Q Consensus 143 ~~v~~~~~~~i~~w~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~ 219 (446)
.....+.+.+.++|.+..... .....+.||.. +|.-+.| |.++|++++.+-.+.+||+.++
T Consensus 238 yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~----------------~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 238 YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ----------------PVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred eEeeccCCceEEEEEEecCcceeeeeeeecccC----------------ceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 334445567778898766654 33445666644 3777777 9999999999999999999988
Q ss_pred CeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee--CCCCeeEEEECCCCCEEEEEecC
Q 013282 220 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDN 297 (446)
Q Consensus 220 ~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d 297 (446)
.... ....++.-.+.++.| .|+|. .+++|+.|+++..||+.... ..... ....|.++++++||+++++.+.|
T Consensus 302 d~~~--~y~~~~~~S~~sc~W--~pDg~-~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 302 DLRH--LYPSGLGFSVSSCAW--CPDGF-RFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred hhhh--hcccCcCCCcceeEE--ccCCc-eeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 6442 222233445566655 89998 59999999999999996543 33332 33569999999999999999999
Q ss_pred CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceE--EEEEcc-CCC
Q 013282 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR--SIRYTS-DGR 374 (446)
Q Consensus 298 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~--~l~~s~-dg~ 374 (446)
..|++++..+......+. ...+|++++++.+++++++.-.+..+++||+.. ...++.+.||...-. .-+|.- +..
T Consensus 376 ~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhhcccccceEEEeccCCCCcc
Confidence 999999987665544343 456899999999999999999999999999975 778888888876422 223433 447
Q ss_pred EEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCC-CcEEEEEecCCcceEE
Q 013282 375 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGSLL 431 (446)
Q Consensus 375 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~D~~~~~~l 431 (446)
++|+|+.|+.|+||+..+|+++..+.+|...|++++|+|.. ..+|+|+.||++++|-
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 99999999999999999999999999999999999999955 5688999999999874
No 69
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-27 Score=226.41 Aligned_cols=228 Identities=19% Similarity=0.278 Sum_probs=191.3
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 276 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (446)
..++|||++.+|.|.+||+...........+..|...++.++| ++....+|++||.||+|++||++..+...++. ..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldf--h~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nS 176 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDF--HSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNS 176 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeee--ccCCccEEEecCCCceEEEEeeecccccccccccc
Confidence 7899999999999999999885433334567889999999998 78888899999999999999999888777777 67
Q ss_pred CCeeEEEECC-CCCEEEEEecCCcEEEEECCC-CceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCC-Ccc
Q 013282 277 WPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SES 353 (446)
Q Consensus 277 ~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~-~~~ 353 (446)
..|..+.|+| .+..|+++.++|.+++||++. .++...+.+|.++|.|+.|||++.+||||+.|++|+|||+... ..+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 7899999999 788999999999999999984 5677788899999999999999999999999999999999632 234
Q ss_pred eEEEecCCCceEEEEEccCCC-EEEEEe--CCCeEEEEEcCCCeeE-eEeeccccCeEEEEEcC-CCCcEEEEEecCCcc
Q 013282 354 VAVLKGNLGAIRSIRYTSDGR-YMATAE--PADFVHVYDVKSGYEK-EQEIDFFGEISGISFSP-DTESLFIGVWDRTYG 428 (446)
Q Consensus 354 ~~~~~~~~~~v~~l~~s~dg~-~l~~~~--~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~sp-dg~~l~~~~~D~~~~ 428 (446)
+.++.. ..+|.+++|-|..+ +||+++ .|-.|+|||++-.+.+ ..+..|...++.++|.. |-..|.+++.|+++-
T Consensus 257 ~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 257 KHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 455543 56899999999876 455555 3678999999987654 45567999999999976 455688999998864
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4e-28 Score=210.45 Aligned_cols=235 Identities=13% Similarity=0.168 Sum_probs=199.3
Q ss_pred EEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEE-----eecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc
Q 013282 192 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRT-----TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 192 v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~-----~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
+..++++|++|++|+.||-|.||+..+++...-.+. +--+...|.++.| +.+.. .+++|+.||.|++|.+.+
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F--SRDsE-MlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF--SRDSE-MLASGSQDGKIKVWRIET 294 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee--cccHH-HhhccCcCCcEEEEEEec
Confidence 444455999999999999999999987763321111 1124566777777 88876 799999999999999999
Q ss_pred ceeeEeee--CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEE
Q 013282 267 YQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344 (446)
Q Consensus 267 ~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~i 344 (446)
|.+++.|. |...|+|+.||.|+..+++++.|.++++.-+++|+++..++||...|+...|.++|+.+++++.||+|++
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEE
Confidence 99999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcceEEEec-----------------------------------------------CCCceEEEEEccCCCEEE
Q 013282 345 WDLRNLSESVAVLKG-----------------------------------------------NLGAIRSIRYTSDGRYMA 377 (446)
Q Consensus 345 wd~~~~~~~~~~~~~-----------------------------------------------~~~~v~~l~~s~dg~~l~ 377 (446)
|+..+ ..++.+++. ..+...+.+.+|.|.+++
T Consensus 375 W~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiY 453 (508)
T KOG0275|consen 375 WHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIY 453 (508)
T ss_pred ecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence 99854 333222210 112344667899999999
Q ss_pred EEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 378 TAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 378 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+.+.|+.++.|.+.+|+....+.-|...|.+++-+|..+.|++-+.||..+-|
T Consensus 454 cigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred EEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence 99999999999999999888888899999999999999999999999887654
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.8e-26 Score=204.25 Aligned_cols=233 Identities=17% Similarity=0.215 Sum_probs=196.2
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (446)
-|+++...++.|++|+.||.+++|+.... +..+..+|.+++..+.+.........|++++.|.++++|.++.++..
T Consensus 107 WVSsv~~~~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 107 WVSSVKGASKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred hhhhhcccCceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 57777667899999999999999998543 34667799999998777654444457999999999999998776543
Q ss_pred Eee-----eCCCCeeEEEECCCCCEEEEEecCCcEEEEECC-------------------------CCceEEEecCCCCc
Q 013282 271 KHF-----RFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-------------------------TGKTIASLCGHLDF 320 (446)
Q Consensus 271 ~~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-------------------------~~~~~~~~~~~~~~ 320 (446)
... .|...|.+++..++|..+++|+.|..|.||+.. ++.++..+.||..+
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~ 262 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP 262 (423)
T ss_pred hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc
Confidence 221 389999999999999999999999999999921 12356678899999
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe---eEe
Q 013282 321 SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY---EKE 397 (446)
Q Consensus 321 v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~---~~~ 397 (446)
|.++.|++ ...++++++|.+|+.||+.. +..+.++.+ ...+.++..+|..++||+|+.|..|++||.+++. ..+
T Consensus 263 Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-g~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 263 VSSVVWSD-ATVIYSVSWDHTIKVWDLET-GGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred eeeEEEcC-CCceEeecccceEEEEEeec-ccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 99999998 66899999999999999966 777777776 5679999999999999999999999999999863 567
Q ss_pred EeeccccCeEEEEEcCCCCc-EEEEEecCCcceE
Q 013282 398 QEIDFFGEISGISFSPDTES-LFIGVWDRTYGSL 430 (446)
Q Consensus 398 ~~~~~~~~v~~~~~spdg~~-l~~~~~D~~~~~~ 430 (446)
++.+|.+.|.++.|+|...+ |++++.|++++.|
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 88899999999999997665 6788999998766
No 72
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-27 Score=223.69 Aligned_cols=227 Identities=19% Similarity=0.247 Sum_probs=199.7
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCe---eeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc--eeeEe
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGV---SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--QLSKH 272 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~---~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~ 272 (446)
.+++|.|||.||.|++|+...... ..+...+..|...|+.+.+ ..+++ .|+++|.|-+|++|+...+ -+..+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL--~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL--CGNGK-TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh--hcCCC-ceEEecCCceEEEeecccCcchhHhh
Confidence 678999999999999999876543 2234567789999998887 56666 5999999999999999776 56667
Q ss_pred ee-CCCCeeEEEE-CCCCCEEEEEecCCcEEEEECCCC--ceEEE--------ec-CCCCceeEEEECCCCCEEEEEeCC
Q 013282 273 FR-FPWPVNHSSQ-SPDGKLLIIVGDNPDGLLVDSMTG--KTIAS--------LC-GHLDFSFASAWHPNGVTFATGNQD 339 (446)
Q Consensus 273 ~~-~~~~v~~~~~-sp~~~~l~~~~~d~~i~i~d~~~~--~~~~~--------~~-~~~~~v~~~~~~p~~~~l~sgs~d 339 (446)
+. |...|.|+++ .++..++|+||-|+.|.+||+.++ +.+.+ +. |+...|++++-+|.|..|++|+..
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 76 9999999999 778889999999999999999977 33332 33 788999999999999999999999
Q ss_pred CcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEE
Q 013282 340 KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLF 419 (446)
Q Consensus 340 ~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 419 (446)
+.+++||.|. .+.+..+.||...|+.+..++||+.+++|+.||+|++||+...+++.++..|...|.++..+|+=..++
T Consensus 193 k~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 193 KDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred cceEEecccc-ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999987 777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcc
Q 013282 420 IGVWDRTYG 428 (446)
Q Consensus 420 ~~~~D~~~~ 428 (446)
+|+.|+.+-
T Consensus 272 sG~rd~~i~ 280 (735)
T KOG0308|consen 272 SGGRDGNIY 280 (735)
T ss_pred ecCCCCcEE
Confidence 999998763
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.1e-26 Score=204.44 Aligned_cols=260 Identities=15% Similarity=0.172 Sum_probs=212.8
Q ss_pred cCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCC
Q 013282 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP 219 (446)
Q Consensus 142 ~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~ 219 (446)
...+....|..+.+++-.++ ..+..+.||.. .|+.+.+ +...+++++.|-.|+||.....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~k----------------ki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN--QILATLKGHTK----------------KITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CcceecCCCCceEEEecchh--hhhhhccCcce----------------EEEEEEeccchhheeecCCcceEEeeccccc
Confidence 33444444556677776555 23334455432 4666666 6788999999999999998765
Q ss_pred CeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCC---CCeeEEEECCCCCEEEEEec
Q 013282 220 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP---WPVNHSSQSPDGKLLIIVGD 296 (446)
Q Consensus 220 ~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~ 296 (446)
. +......|.++|+.+.. +|+|. +|+++++|++....|++++.++....+. -.+++.+|||||.+|.+|+.
T Consensus 294 s---~~~~~~~h~~~V~~ls~--h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 294 S---EPTSSRPHEEPVTGLSL--HPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred c---Cccccccccccceeeee--ccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC
Confidence 4 34566688999999998 99998 6999999999999999999988777753 34899999999999999999
Q ss_pred CCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEec-CCCceEEEEEccCCCE
Q 013282 297 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-NLGAIRSIRYTSDGRY 375 (446)
Q Consensus 297 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~s~dg~~ 375 (446)
|+.|+|||+.++..+..|.+|.++|.+++|+.+|-+||+++.|+.|++||+|+ .+...++.. ....+.++.|.+.|.+
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-LKNFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh-hcccceeeccccccceeEEEcCCCCe
Confidence 99999999999999999999999999999999999999999999999999998 445555543 2347999999999999
Q ss_pred EEEEeCCCeEEEEEcC--CCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCC
Q 013282 376 MATAEPADFVHVYDVK--SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 376 l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
|+.++.+=+|++++-. +..++..+..|.+..+++.|....+++++++.|..
T Consensus 447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred EEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh
Confidence 9999777677777633 45677777888899999999999999999999876
No 74
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2e-26 Score=197.61 Aligned_cols=202 Identities=26% Similarity=0.431 Sum_probs=168.1
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCe---------eeEEEE---eecCCCceeeEEEEeCCCCCeEEEEEeC
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGV---------SFCSRT---TYDDNAITNAVEIYGSPSGAVHFTASNN 255 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~---------~~~~~~---~~~~~~~v~~i~~~~s~~~~~~l~s~s~ 255 (446)
.|.+|.+ .|+++++|+.||.|.|||+.+... ..|... ...|.-.|..+.|+ |-..-.|.+++.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy--P~DtGmFtssSF 122 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY--PIDTGMFTSSSF 122 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe--eecCceeecccc
Confidence 6888877 799999999999999999976541 112111 12455567777775 433338999999
Q ss_pred CCcEEEEecCcceeeEeeeCCCCeeEEEECC---CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCC-C
Q 013282 256 DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP---DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNG-V 331 (446)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~-~ 331 (446)
|.++++||..+-+....|+.++.|..-++|| .-.++|+|..+-.|++.|+.+|...+.+.||.+.|.++.|+|.. -
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~ 202 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW 202 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCcee
Confidence 9999999999999999999999999999999 34577889999999999999999999999999999999999954 5
Q ss_pred EEEEEeCCCcEEEEEccCCCcceEEE--------------ecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 013282 332 TFATGNQDKTCRIWDLRNLSESVAVL--------------KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 394 (446)
Q Consensus 332 ~l~sgs~d~~v~iwd~~~~~~~~~~~--------------~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~ 394 (446)
.|++|+.||.||+||+|....+..++ .+|.+.|.+++|+.+|+++++.+.|..+++|+..+|+
T Consensus 203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 67899999999999998754444444 3466789999999999999999999999999998875
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=211.61 Aligned_cols=231 Identities=22% Similarity=0.294 Sum_probs=188.3
Q ss_pred eEEEEEeC---C-cEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc
Q 013282 191 QVSTLAVK---D-KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 191 ~v~~l~~~---~-~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
.|++++|. . .+.+|++ -.+.+|+..+.... +++.-....+.+++| ..+|. +|++|...|.|++||+.+
T Consensus 28 ~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~---k~~srFk~~v~s~~f--R~DG~-LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVR---KTFSRFKDVVYSVDF--RSDGR-LLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cceeEecCCCCCCceEEecc--cEEEEEecchhhhh---hhHHhhccceeEEEe--ecCCe-EEEccCCcCcEEEecccc
Confidence 58888883 3 4455544 34788887665433 333344556788888 78887 799999999999999777
Q ss_pred ceeeEeee-CCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC-CCCEEEEEeCCCcEE
Q 013282 267 YQLSKHFR-FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCR 343 (446)
Q Consensus 267 ~~~~~~~~-~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~ 343 (446)
...++.+. |..++..+.|+|++ ..|++|++|+.+++||+.+......+.+|+++|.|.+|+| ++.+++|||.||+||
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 66677777 99999999999954 5667888999999999999887668999999999999999 677999999999999
Q ss_pred EEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee-EeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 344 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE-KEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
+||+|.....+..+ .|..+|.++.+-|.|..+|+|+.+ .|+|||+.+|.. +.....|...|+|+.+..++..|++|+
T Consensus 180 l~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 180 LWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred EEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 99999855555555 478899999999999999998754 599999996654 444445999999999999999999999
Q ss_pred ecCCcceEE
Q 013282 423 WDRTYGSLL 431 (446)
Q Consensus 423 ~D~~~~~~l 431 (446)
-|+.++.+-
T Consensus 258 LD~~VKVfd 266 (487)
T KOG0310|consen 258 LDRHVKVFD 266 (487)
T ss_pred cccceEEEE
Confidence 999998764
No 76
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-26 Score=192.37 Aligned_cols=239 Identities=16% Similarity=0.149 Sum_probs=193.8
Q ss_pred EeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-
Q 013282 196 AVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR- 274 (446)
Q Consensus 196 ~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 274 (446)
.+-|.+|||++.|++|+|+....++.......+.+|.++|.-+.+. +|.-..+|++++.||.|.||.-++++-.+...
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPKFGTILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence 4478999999999999999999888756678889999999999986 55544589999999999999988876544333
Q ss_pred --CCCCeeEEEECC--CCCEEEEEecCCcEEEEECCCC-c--eEEEecCCCCceeEEEECCC---C-----------CEE
Q 013282 275 --FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTG-K--TIASLCGHLDFSFASAWHPN---G-----------VTF 333 (446)
Q Consensus 275 --~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~-~--~~~~~~~~~~~v~~~~~~p~---~-----------~~l 333 (446)
|...|++++|.| .|-.|++++.||.|.|.+.++. . .......|.-.|++++|.|. | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 889999999999 5678899999999999998744 1 23345679999999999995 5 579
Q ss_pred EEEeCCCcEEEEEccCCC-cceEEEecCCCceEEEEEccCC----CEEEEEeCCCeEEEEEcCCCe---eEeEeeccccC
Q 013282 334 ATGNQDKTCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDG----RYMATAEPADFVHVYDVKSGY---EKEQEIDFFGE 405 (446)
Q Consensus 334 ~sgs~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~s~dg----~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~ 405 (446)
++|+.|..|+||+..+.. ..-+++.+|.+.|+.++|.|.- .+||+++.||+|.||-..... ....+......
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~ 258 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDV 258 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcc
Confidence 999999999999996521 2345589999999999999964 489999999999999765321 12222335567
Q ss_pred eEEEEEcCCCCcEEEEEecCCcceEEEEec
Q 013282 406 ISGISFSPDTESLFIGVWDRTYGSLLEYGR 435 (446)
Q Consensus 406 v~~~~~spdg~~l~~~~~D~~~~~~l~~~~ 435 (446)
+..++||+.|+.|++++.|..+..|-+-..
T Consensus 259 ~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred eEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 999999999999999999998876655443
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=222.45 Aligned_cols=234 Identities=17% Similarity=0.113 Sum_probs=186.6
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCC----------------------------e---------------eeE-
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----------------------------V---------------SFC- 224 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~----------------------------~---------------~~~- 224 (446)
.|+++.| +|+|||+||.||.|+||.+.... . ..+
T Consensus 269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~ 348 (712)
T KOG0283|consen 269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV 348 (712)
T ss_pred cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence 7999999 99999999999999999876500 0 000
Q ss_pred -------------EEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECC-CCCE
Q 013282 225 -------------SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP-DGKL 290 (446)
Q Consensus 225 -------------~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~ 290 (446)
...+.+|.+.|-.+ .|+.++ +|++++.|.+||+|++....++..|.|+.-|+|++|+| |.++
T Consensus 349 ~~p~~~f~f~ekP~~ef~GHt~DILDl--SWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 349 LLPLKAFVFSEKPFCEFKGHTADILDL--SWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRY 424 (712)
T ss_pred cCCCccccccccchhhhhccchhheec--ccccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCc
Confidence 01123455555444 447776 79999999999999999999999999999999999999 8999
Q ss_pred EEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEe--cC------CC
Q 013282 291 LIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK--GN------LG 362 (446)
Q Consensus 291 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~--~~------~~ 362 (446)
|++|+-|+.|+||++...+.+.-... ..-|++++|.|+|+..++|+.+|.+++|++.. .+....+. .| ..
T Consensus 425 FiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred EeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccCccccCc
Confidence 99999999999999998876665543 38899999999999999999999999999965 33333221 11 22
Q ss_pred ceEEEEEccCC-CEEEEEeCCCeEEEEEcCCCeeEeEeeccc--cCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 363 AIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFF--GEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 363 ~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.|+.+.|.|.. ..|++.+.|..|+|||.+....+..+.++. ..-....|+.||++|++++.|.-+=.|
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 79999999854 357778899999999998777777777644 234567899999999999988766554
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=194.90 Aligned_cols=232 Identities=17% Similarity=0.255 Sum_probs=194.3
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (446)
.|+++++++.++|+|+.|-+|+|||+...... ..+..|.+.++++.|+ .|.....|++|+.||.|.+|+.....++
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~~ql---g~ll~HagsitaL~F~-~~~S~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKRKQL---GILLSHAGSITALKFY-PPLSKSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccchhhh---cceeccccceEEEEec-CCcchhheeeecCCCcEEEEEcCCeEEe
Confidence 79999999999999999999999999876433 4556789999999995 3333336999999999999999999999
Q ss_pred Eeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 013282 271 KHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 349 (446)
Q Consensus 271 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~ 349 (446)
..++ |...|+.++++|.+++.++.+.|+.+++||+..|+.-..+.- ......+.|+|.|.+++.++.++ |-||.+.+
T Consensus 121 ~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~ 198 (362)
T KOG0294|consen 121 KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDN 198 (362)
T ss_pred eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccE-EEEEeccc
Confidence 9999 899999999999999999999999999999998886655542 12234499999999999998875 99999965
Q ss_pred CCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEE--cCCCCcEEEEEecCCc
Q 013282 350 LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF--SPDTESLFIGVWDRTY 427 (446)
Q Consensus 350 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--spdg~~l~~~~~D~~~ 427 (446)
......+.. ...+.++.|. ++..|++|..++.|++||..+..+...+.+|..+|.++.+ .|++.+|++++.||.|
T Consensus 199 -A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 199 -ASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred -HhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceE
Confidence 444444432 3456677775 4568899999999999999999899999999999999984 5678999999999999
Q ss_pred ceEE
Q 013282 428 GSLL 431 (446)
Q Consensus 428 ~~~l 431 (446)
+.|-
T Consensus 276 ~vWd 279 (362)
T KOG0294|consen 276 KVWD 279 (362)
T ss_pred EEEE
Confidence 9874
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=216.42 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=201.7
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc-
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY- 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~- 267 (446)
-|..++. +++.|++++.|-+|++|+..... ..|..+...|...|.+++.. .++ ..++++|+.|+.|.+||+.++
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~-ak~-~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYI-AKN-NELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeec-ccC-ceeEEecCCCccEEEEEccCcc
Confidence 3555544 78899999999999999997776 67889999999999999873 233 448999999999999999976
Q ss_pred -eeeEee----------eCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEE
Q 013282 268 -QLSKHF----------RFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATG 336 (446)
Q Consensus 268 -~~~~~~----------~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg 336 (446)
+.+..+ .+..+|.+++.++.|..+++|+..+.+++||.++++.+..++||++.|.++-.+++|..++++
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~ 231 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA 231 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec
Confidence 222222 145679999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCC
Q 013282 337 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE 416 (446)
Q Consensus 337 s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~ 416 (446)
|.||+|++||+.. .+++.++..|...|+++..+|+-.++++|+.||.|..-|+++......+.....+|..+..+...+
T Consensus 232 sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~ 310 (735)
T KOG0308|consen 232 SSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDN 310 (735)
T ss_pred CCCceEEeeeccc-cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccC
Confidence 9999999999966 889999999999999999999999999999999999999998644444445566788888776555
Q ss_pred cEEEEEecCCcceE
Q 013282 417 SLFIGVWDRTYGSL 430 (446)
Q Consensus 417 ~l~~~~~D~~~~~~ 430 (446)
-+-++.+|+.|+.|
T Consensus 311 ~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 311 SVWVTTTDSSIKRW 324 (735)
T ss_pred Cceeeeccccceec
Confidence 56788888888765
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.2e-26 Score=194.48 Aligned_cols=220 Identities=20% Similarity=0.299 Sum_probs=183.9
Q ss_pred ecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEE
Q 013282 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 225 (446)
Q Consensus 148 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~ 225 (446)
+.|++-.+|+.+++ .++.++.. ..-|.+++| +.++|++|+.+..++||+++.+... .
T Consensus 78 aadftakvw~a~tg--delhsf~h-----------------khivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--p 136 (334)
T KOG0278|consen 78 AADFTAKVWDAVTG--DELHSFEH-----------------KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--P 136 (334)
T ss_pred cccchhhhhhhhhh--hhhhhhhh-----------------hheeeeEEecccchhhhccchHHHhhhhhccCCCCC--c
Confidence 34667789999888 33333331 114778888 8899999999999999999887644 4
Q ss_pred EEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEEC
Q 013282 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS 305 (446)
Q Consensus 226 ~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 305 (446)
..+.+|.+.|..+.|+ ...+ .|++++.|++||+||..++..++.+..+.+|+++.++++|++|.++. .+.|.+||.
T Consensus 137 ~E~~ghtg~Ir~v~wc--~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwda 212 (334)
T KOG0278|consen 137 KEISGHTGGIRTVLWC--HEDK-CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDA 212 (334)
T ss_pred hhhcCCCCcceeEEEe--ccCc-eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEecc
Confidence 5667888888887774 3434 57787999999999999999999999999999999999999776654 568999999
Q ss_pred CCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEE-ecCCCceEEEEEccCCCEEEEEeCCCe
Q 013282 306 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADF 384 (446)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~~~~~dg~ 384 (446)
.+-.+++.++ -...|.+.+++|+...+++|+.|..++.||..+ +..+..+ ++|.++|.|+.|+|+|...|+|+.||+
T Consensus 213 ksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 213 KSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 9988888876 456789999999999999999999999999966 6666665 899999999999999999999999999
Q ss_pred EEEEEcCCCe
Q 013282 385 VHVYDVKSGY 394 (446)
Q Consensus 385 i~iwd~~~~~ 394 (446)
|++|-+..++
T Consensus 291 irlWQt~~~~ 300 (334)
T KOG0278|consen 291 IRLWQTTPGK 300 (334)
T ss_pred EEEEEecCCC
Confidence 9999877654
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.7e-25 Score=219.78 Aligned_cols=268 Identities=19% Similarity=0.200 Sum_probs=214.3
Q ss_pred CCeEEEEecCCCC---ceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCC--C--
Q 013282 150 HFSVIHWSSLTSS---RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP--G-- 220 (446)
Q Consensus 150 ~~~i~~w~~~~~~---~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~--~-- 220 (446)
|+.+.+|+...-- .....++..++.....|.| .|.|+.| ||.+||+|+.|+.|.||..... +
T Consensus 36 d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~---------sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~ 106 (942)
T KOG0973|consen 36 DGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG---------SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTV 106 (942)
T ss_pred cccceeeccccccchhhhhhcccchhheeeccccC---------ceeEEEECCCCCeEeeccCcceEEEeeecccCCccc
Confidence 5566789863321 1122234455544445555 7889888 9999999999999999998730 0
Q ss_pred -----------eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCC
Q 013282 221 -----------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDG 288 (446)
Q Consensus 221 -----------~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~ 288 (446)
.-.+..++.+|.+.|..+.+ +|++. +|++++.|++|.||+..+++.+..+. |...|-.+.|.|-|
T Consensus 107 fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W--sp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G 183 (942)
T KOG0973|consen 107 FGSTGGAKNVESWKVVSILRGHDSDVLDVNW--SPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG 183 (942)
T ss_pred ccccccccccceeeEEEEEecCCCccceecc--CCCcc-EEEEecccceEEEEccccceeeeeeecccccccceEECCcc
Confidence 11245677789888887776 99987 79999999999999999999998888 99999999999999
Q ss_pred CEEEEEecCCcEEEEECCCCceEEEecCC------CCceeEEEECCCCCEEEEEeC----CCcEEEEEccCCCcceEEEe
Q 013282 289 KLLIIVGDNPDGLLVDSMTGKTIASLCGH------LDFSFASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAVLK 358 (446)
Q Consensus 289 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~p~~~~l~sgs~----d~~v~iwd~~~~~~~~~~~~ 358 (446)
++||+-++|++|++|.+.+-...+.+.++ ......+.|+|||++|++... -.++.|.+-. ..+.-..+.
T Consensus 184 ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-tWk~~~~Lv 262 (942)
T KOG0973|consen 184 KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-TWKVDKDLV 262 (942)
T ss_pred CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC-Cceeeeeee
Confidence 99999999999999998877777776543 346788999999999998754 3368888874 467778899
Q ss_pred cCCCceEEEEEccC--------C-----C----EEEEEeCCCeEEEEEcCCCeeEeEeec-cccCeEEEEEcCCCCcEEE
Q 013282 359 GNLGAIRSIRYTSD--------G-----R----YMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFI 420 (446)
Q Consensus 359 ~~~~~v~~l~~s~d--------g-----~----~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~ 420 (446)
||.+++.+++|+|- | . .+|+|+.|++|.||.....+++..... ....|..++|+|||..|++
T Consensus 263 GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 263 GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFA 342 (942)
T ss_pred cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEE
Confidence 99999999999981 1 1 678999999999999887777665554 3467999999999999999
Q ss_pred EEecCCcceE
Q 013282 421 GVWDRTYGSL 430 (446)
Q Consensus 421 ~~~D~~~~~~ 430 (446)
++.||++..+
T Consensus 343 cS~DGtV~~i 352 (942)
T KOG0973|consen 343 CSLDGTVALI 352 (942)
T ss_pred EecCCeEEEE
Confidence 9999998543
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.2e-25 Score=189.07 Aligned_cols=254 Identities=15% Similarity=0.089 Sum_probs=203.9
Q ss_pred cCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe-CCcEEEEeccCCcEEEEEcCCCC
Q 013282 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPG 220 (446)
Q Consensus 142 ~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~ 220 (446)
...+..+-|+++++++.........+... .++.+.+| +...+++|+.||.|+++|+++..
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~~~~-------------------~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKFKHG-------------------APLLDCAFADESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhheecC-------------------CceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence 33444456899999998666333333332 26899999 88999999999999999998875
Q ss_pred eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcE
Q 013282 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDG 300 (446)
Q Consensus 221 ~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 300 (446)
. .....|...+.++.. .+-.. .+++|++|++|++||.....+...+..+..|.++..+ |+.|++|+.+..+
T Consensus 87 ~----~~igth~~~i~ci~~--~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 87 E----DQIGTHDEGIRCIEY--SYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKV 157 (323)
T ss_pred c----eeeccCCCceEEEEe--eccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceE
Confidence 3 344578889999987 44444 6999999999999999887777777777789998875 7889999999999
Q ss_pred EEEECCCCceEEEec--CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCC---CcceEEEecCCC---------ceEE
Q 013282 301 LLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL---SESVAVLKGNLG---------AIRS 366 (446)
Q Consensus 301 ~i~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~---~~~~~~~~~~~~---------~v~~ 366 (446)
.+||+++.....+.. .-.-.+.|+++-|++.=++.+|-||.|.+=.+... .+....|+.|.. +|++
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 999999765443222 23457899999998888999999999888766432 133456677653 7999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEe
Q 013282 367 IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 367 l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 423 (446)
|+|+|-...||+|+.||.|.+||+.+.+.+.++......|..++|+.+|..||+|+.
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999999999989888877788999999999999999854
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=9.7e-27 Score=195.12 Aligned_cols=235 Identities=19% Similarity=0.197 Sum_probs=196.3
Q ss_pred eEEEEEe-----CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC
Q 013282 191 QVSTLAV-----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (446)
Q Consensus 191 ~v~~l~~-----~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~ 265 (446)
+|..+++ +|-+|++++.||.-.+-+=+++.. .-++.+|.+.|....+ ..+.. ..++++.|-+-++||.-
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw---igtfeghkgavw~~~l--~~na~-~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW---IGTFEGHKGAVWSATL--NKNAT-RAASAAADFTAKVWDAV 89 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc---EEeeeccCcceeeeec--Cchhh-hhhhhcccchhhhhhhh
Confidence 4666666 889999999999987766656543 4678899999999887 55544 68899999999999999
Q ss_pred cceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-ceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEE
Q 013282 266 KYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344 (446)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~i 344 (446)
+|..+..|.|..-|..++|+.|.+.|++|+.+..++|||++.. .+...+.+|++.|..+-|....+.|++.+.|++||+
T Consensus 90 tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL 169 (334)
T KOG0278|consen 90 TGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRL 169 (334)
T ss_pred hhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence 9999999999999999999999999999999999999999854 456778899999999999998899999999999999
Q ss_pred EEccCCCcceEEEecCC---------------------------------------CceEEEEEccCCCEEEEEeCCCeE
Q 013282 345 WDLRNLSESVAVLKGNL---------------------------------------GAIRSIRYTSDGRYMATAEPADFV 385 (446)
Q Consensus 345 wd~~~~~~~~~~~~~~~---------------------------------------~~v~~l~~s~dg~~l~~~~~dg~i 385 (446)
||.|+ +..++.+.-.. ..|.+..++|+...+++|+.|..+
T Consensus 170 WD~rT-gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 170 WDHRT-GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred EEecc-CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEE
Confidence 99987 55555443210 124555566766677778888888
Q ss_pred EEEEcCCCeeEeEe-eccccCeEEEEEcCCCCcEEEEEecCCcceEEE
Q 013282 386 HVYDVKSGYEKEQE-IDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 432 (446)
Q Consensus 386 ~iwd~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~ 432 (446)
+.||..++..+..+ .+|.++|.++.|+|+|..-++|+.||++..|..
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 88888888877775 789999999999999999999999999987643
No 84
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=8.5e-25 Score=192.76 Aligned_cols=244 Identities=12% Similarity=0.138 Sum_probs=198.3
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|.+++. +.++++|||.|..-.+|++.++... ....+|+..|.++.| +.+|. +|++|..+|.|+||...++.
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~F--shdgt-lLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSF--SHDGT-LLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEE--ccCce-EEEecCCCccEEEEEcccCc
Confidence 3555555 7899999999999999999888733 455689999999988 88987 79999999999999999998
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
....+. .-..|.=+.|+|-+..|++|+.||.+.+|.+.++...+.+.||..++++=.|.|+|+.+++|..||+|++|++
T Consensus 140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence 888876 5566888999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCCCcceEEEec---------------------------------------------------CCCceEEE---EEccCC
Q 013282 348 RNLSESVAVLKG---------------------------------------------------NLGAIRSI---RYTSDG 373 (446)
Q Consensus 348 ~~~~~~~~~~~~---------------------------------------------------~~~~v~~l---~~s~dg 373 (446)
.+ ++++..+.. +...+.++ .|+..-
T Consensus 220 kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 220 KT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL 298 (399)
T ss_pred CC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence 65 665554431 00012222 233334
Q ss_pred CEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc-------ceEEEEecccCceecc
Q 013282 374 RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY-------GSLLEYGRCRNYSYLD 443 (446)
Q Consensus 374 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~-------~~~l~~~~~~~~~~l~ 443 (446)
.+.|+|+.||+|.|||+.+.+.. ....|..+|..+.|-+ ..+|++++.||.+ |.++...++|....++
T Consensus 299 pL~A~G~vdG~i~iyD~a~~~~R-~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAASTLR-HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred chhhcccccceEEEEecccchhh-eeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 56789999999999999887544 4455888899999999 7889988776665 5667777888766554
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-24 Score=186.54 Aligned_cols=232 Identities=18% Similarity=0.187 Sum_probs=193.4
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeC--CCcEEEEecCc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMGK 266 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~--dg~v~iwd~~~ 266 (446)
.|.++.+ +|.+|++++.|-+|++|+...+... ++...+.--+..++|. ++.. .++.++. |.+||..++.+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~---~ti~skkyG~~~~~Ft-h~~~--~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV---KTINSKKYGVDLACFT-HHSN--TVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee---eEeecccccccEEEEe-cCCc--eEEEccCCCCCceEEEEeec
Confidence 7999999 8999999999999999999887544 4445555566777774 3333 2444444 88999999999
Q ss_pred ceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 267 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 267 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
.+.++.|. |...|+.++.+|-+..+++++.|++|++||++..++...+..... ..+||.|.|-++|++.....|+||
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEE
Confidence 99999999 999999999999889999999999999999998888777753333 357899999999999988899999
Q ss_pred EccCC-CcceEEEecC---CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccC---eEEEEEcCCCCcE
Q 013282 346 DLRNL-SESVAVLKGN---LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGE---ISGISFSPDTESL 418 (446)
Q Consensus 346 d~~~~-~~~~~~~~~~---~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~spdg~~l 418 (446)
|+|.. ..+..++.-. ....+.+.|||||++|+.++..+.+++.|.-+|..+..+..+... ..+..|+||++++
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 99975 4566666543 567889999999999999999999999999999988877766543 2578899999999
Q ss_pred EEEEecCCcceE
Q 013282 419 FIGVWDRTYGSL 430 (446)
Q Consensus 419 ~~~~~D~~~~~~ 430 (446)
++|+.||++-.|
T Consensus 248 l~gs~dg~i~vw 259 (311)
T KOG1446|consen 248 LSGSDDGTIHVW 259 (311)
T ss_pred EEecCCCcEEEE
Confidence 999999998665
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=202.73 Aligned_cols=279 Identities=14% Similarity=0.180 Sum_probs=216.2
Q ss_pred eeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe
Q 013282 118 RRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV 197 (446)
Q Consensus 118 ~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~ 197 (446)
.+|...|.|.+-|+..-..++ ..+.||.|++|+........ .+.. |.| .|..|++
T Consensus 63 ~gHrdGV~~lakhp~~ls~~a-------SGs~DG~VkiWnlsqR~~~~--~f~A-------H~G---------~V~Gi~v 117 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVA-------SGSCDGEVKIWNLSQRECIR--TFKA-------HEG---------LVRGICV 117 (433)
T ss_pred cccccccchhhcCcchhhhhh-------ccccCceEEEEehhhhhhhh--eeec-------ccC---------ceeeEEe
Confidence 445567778877776433322 23447888999987664333 3332 223 5888999
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 276 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (446)
+...++++|.|.+|+.|.+..+. ..+. ...+.+..++. +..+. .+++++. .|.|||.....++..+. ..
T Consensus 118 ~~~~~~tvgdDKtvK~wk~~~~p----~~ti-lg~s~~~gIdh--~~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 118 TQTSFFTVGDDKTVKQWKIDGPP----LHTI-LGKSVYLGIDH--HRKNS-VFATCGE--QIDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred cccceEEecCCcceeeeeccCCc----ceee-ecccccccccc--ccccc-cccccCc--eeeecccccCCccceeecCC
Confidence 77999999999999999987641 2222 23445566654 33333 5887764 58999999999999988 56
Q ss_pred CCeeEEEECCC-CCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceE
Q 013282 277 WPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 355 (446)
Q Consensus 277 ~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~ 355 (446)
..|.++.|+|- ...|++|+.|+.|.|||++++++++.+. -.-.-+.++|+|.+-.|++|+.|..+..+|+|....++.
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccch
Confidence 67999999994 4566778899999999999999988765 234557899999888899999999999999999999999
Q ss_pred EEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec-cccCeEEEEEcCCCCcEEEEEecCCcceEEE
Q 013282 356 VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FFGEISGISFSPDTESLFIGVWDRTYGSLLE 432 (446)
Q Consensus 356 ~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~ 432 (446)
...+|..+|.++.|||.|+-+++||.|.+|+||.+..+........ --..|.++.||.|.+++++|+.|++++-|-.
T Consensus 267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999999999999999999999999999999999987743322111 2256999999999999999999999987743
No 87
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=8e-25 Score=208.86 Aligned_cols=247 Identities=19% Similarity=0.219 Sum_probs=207.4
Q ss_pred CCCCCCCCccccCccceEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEE
Q 013282 175 PSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS 253 (446)
Q Consensus 175 ~~~~~~g~~~~~~~~~~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~ 253 (446)
|.....+++..+.++..|.++++ +.+.++..+..+.|++|+..+. .|.+++... .+-+..| -|.+. .+++|
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~---kciRTi~~~--y~l~~~F--vpgd~-~Iv~G 430 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTL---KCIRTITCG--YILASKF--VPGDR-YIVLG 430 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCc---ceeEEeccc--cEEEEEe--cCCCc-eEEEe
Confidence 44444455555666778999999 5666666667789999999877 455555432 4445555 78776 69999
Q ss_pred eCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECC---C--Cce--EEEec-----CCCCc
Q 013282 254 NNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM---T--GKT--IASLC-----GHLDF 320 (446)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~---~--~~~--~~~~~-----~~~~~ 320 (446)
...|.+.+||+.+...+.+++ |.+.|.+++.+||++.+++|+.|.+|++||.. . |.. +..++ .-++.
T Consensus 431 ~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd 510 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD 510 (888)
T ss_pred ccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc
Confidence 999999999999999888888 99999999999999999999999999999974 1 211 11121 13578
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee
Q 013282 321 SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 400 (446)
Q Consensus 321 v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~ 400 (446)
|.|+++||||++||.+-.|.+|+||-+.+ -+..-.+-||.-||.|+..|||++.+++|+.|..|+||-+.-|.+-+.+.
T Consensus 511 vL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f 589 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF 589 (888)
T ss_pred EEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh
Confidence 99999999999999999999999999965 67777888999999999999999999999999999999999999999999
Q ss_pred ccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 401 DFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 401 ~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+|...|.++.|-|....+++++.|+.++.|
T Consensus 590 AHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 590 AHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred cccCceeEEEEcccceeEEEecCcceEEee
Confidence 999999999999999999999999999988
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2e-25 Score=218.70 Aligned_cols=230 Identities=16% Similarity=0.168 Sum_probs=204.0
Q ss_pred ccceEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 188 TQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 188 ~~~~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
....+.++.+.++++++|+.+++|.+|+..+.... ...+.+|.+.|.++.+ +.+...+++|+.|.++++||+.++
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i--~~~l~GH~g~V~~l~~---~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLI--LTRLVGHFGGVWGLAF---PSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEE--EeeccCCCCCceeEEE---ecCCCEEEEEecCCcEEeEecCCC
Confidence 34468888888999999999999999998776432 3337899999999998 335558999999999999999999
Q ss_pred eeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 268 QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 268 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
++...+. |...|.++... ...+++|+.|.+|++|++.+++.+..+.+|.++|.++..+ +.++++|+.|++|++||
T Consensus 282 ~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 9999999 99999999875 4667888999999999999999999999999999999997 88999999999999999
Q ss_pred ccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC-eeEeEeeccccCeEEEEEcCCCCcEEEEEecC
Q 013282 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDR 425 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~ 425 (446)
+.. .++++.+.+|.++|.++.+.+. .++++|+.|+.|++||+.+. +++..+.+|.+-+.++.+. +++|++++.|+
T Consensus 358 ~~~-~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 358 PRT-GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADG 433 (537)
T ss_pred hhh-ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccc
Confidence 974 9999999999999999988765 79999999999999999999 8999999999888766654 67999999999
Q ss_pred CcceE
Q 013282 426 TYGSL 430 (446)
Q Consensus 426 ~~~~~ 430 (446)
+++.|
T Consensus 434 ~Ik~W 438 (537)
T KOG0274|consen 434 TIKLW 438 (537)
T ss_pred cEEEe
Confidence 88776
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.3e-24 Score=176.75 Aligned_cols=234 Identities=21% Similarity=0.304 Sum_probs=190.2
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCC------C------CeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDR------P------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~------~------~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d 256 (446)
.|.+++| .|.+.+.|+...+++|-.... . ......+...+|.+.|.+.+| +|.|. ++++|++|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w--s~~ge-liatgsnd 110 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW--SPCGE-LIATGSND 110 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe--cCccC-eEEecCCC
Confidence 5788888 899999999999988864321 1 011223455688999999887 99998 79999999
Q ss_pred CcEEEEecCccee-----eEeee-CCCCeeEEEECC----CCCEEEEEe-cCCcEEEEECCCCceEEEecCCCCceeEEE
Q 013282 257 CGVRDFDMGKYQL-----SKHFR-FPWPVNHSSQSP----DGKLLIIVG-DNPDGLLVDSMTGKTIASLCGHLDFSFASA 325 (446)
Q Consensus 257 g~v~iwd~~~~~~-----~~~~~-~~~~v~~~~~sp----~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 325 (446)
.+|++.-.+...+ -..+. |.+.|..++|-. .+.+|++++ .|..|++-|...|+..+.+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 9999986643221 12333 899999999953 345666654 47788888999999999999999999887
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCCcceEEEec-------CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeE
Q 013282 326 WHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG-------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 326 ~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 398 (446)
++-+|.++++|++|.+||+||+|- ..++.++.. .+.+|.+++..|.|++|++|-.|....+||++.++.++.
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence 233788999999999999999987 566666532 235799999999999999999999999999999999999
Q ss_pred eeccccCeEEEEEcCCCCcEEEEEecCCcce
Q 013282 399 EIDFFGEISGISFSPDTESLFIGVWDRTYGS 429 (446)
Q Consensus 399 ~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~ 429 (446)
+..|...|.++.|||...||++++.|..|+.
T Consensus 269 f~phsadir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 269 FHPHSADIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred eCCCccceeEEEeCCCceEEEEecccceEEE
Confidence 9999999999999999999999999998763
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.9e-25 Score=203.50 Aligned_cols=230 Identities=18% Similarity=0.224 Sum_probs=176.0
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCee--eEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
.|+++++ .|..|++|+.|-.|++||+...... ....+.......++++.+ ++.|.. |++.+.....+++|-..
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~-iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQ-ILVVSGSAQAKLLDRDG 245 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCe-EEEEecCcceeEEccCC
Confidence 6888888 8999999999999999999755421 112333445567888888 899885 66666778899999766
Q ss_pred ceeeEee-------------eCCCCeeEEEECCC-CCEEEEEecCCcEEEEECCCCc-eEEEec-----CCCCceeEEEE
Q 013282 267 YQLSKHF-------------RFPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGK-TIASLC-----GHLDFSFASAW 326 (446)
Q Consensus 267 ~~~~~~~-------------~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-----~~~~~v~~~~~ 326 (446)
.+..... .|...++|.+|+|. ...+++++.||+++|||+...+ .+..++ +..-++++++|
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 5543322 26677999999995 4578999999999999997543 333333 23457899999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCc--ceEEEecCCC--ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe-eEeEeec
Q 013282 327 HPNGVTFATGNQDKTCRIWDLRNLSE--SVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEID 401 (446)
Q Consensus 327 ~p~~~~l~sgs~d~~v~iwd~~~~~~--~~~~~~~~~~--~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~ 401 (446)
+|+|++||+|+.||.|.+|+.+.... ....-.+|.. .|+||+||+||++|++-+.|+++++||+++.+ ++....+
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 99999999999999999999865322 2334456776 89999999999999999999999999999864 3344333
Q ss_pred c--ccCeEEEEEcCCCCcEEEEEe
Q 013282 402 F--FGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 402 ~--~~~v~~~~~spdg~~l~~~~~ 423 (446)
. ..+-+.++|||+.++|++|..
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CCccCCCCccccCCCceEEEeccc
Confidence 2 245678999999999998843
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=7.8e-25 Score=198.33 Aligned_cols=199 Identities=16% Similarity=0.250 Sum_probs=165.8
Q ss_pred EEEEEe---CCcEEEEeccCCcEEEEEcCCCCe----eeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec
Q 013282 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (446)
Q Consensus 192 v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~ 264 (446)
-..|+| ....|++|+.|++|++|++..... ......+.+|...|..++| ++....+|++++.|+.+.|||+
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~--h~~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAW--HPLHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhc--cccchhhheeecCCCeEEEEEc
Confidence 345667 678899999999999999976553 3345677899999999988 6766668999999999999999
Q ss_pred Cc--ceeeEeee-CCCCeeEEEECC-CCCEEEEEecCCcEEEEECCC-CceEEEecCCCCceeEEEECC-CCCEEEEEeC
Q 013282 265 GK--YQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHP-NGVTFATGNQ 338 (446)
Q Consensus 265 ~~--~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~ 338 (446)
++ .++..... |..+|+|++|+| ++..||+|+.|++|.+||+|+ .++++++.+|.+.|+.+.|+| ....||+++.
T Consensus 258 R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 94 44444444 899999999999 667889999999999999995 457899999999999999999 5678999999
Q ss_pred CCcEEEEEccCCCc-------------ceEEEecCCCceEEEEEccCCC-EEEEEeCCCeEEEEEcCC
Q 013282 339 DKTCRIWDLRNLSE-------------SVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKS 392 (446)
Q Consensus 339 d~~v~iwd~~~~~~-------------~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~iwd~~~ 392 (446)
|+.+.+||+..-+. ++..-.||...|..+.|+|... .|++++.|+.+.||.+..
T Consensus 338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99999999954332 2345568999999999999886 567888999999999763
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.7e-24 Score=186.52 Aligned_cols=234 Identities=18% Similarity=0.162 Sum_probs=189.8
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.|++|+| ...+|++|+.||+|++|++...+... .+....|.++|-+++| +.+|. .+++|+.|+.+++||+.++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-~ka~~~~~~PvL~v~W--sddgs-kVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-PKAQQSHDGPVLDVCW--SDDGS-KVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCccc-chhhhccCCCeEEEEE--ccCCc-eEEeeccCCceEEEEccCC
Confidence 5888888 56788899999999999998764322 3566678888887777 89987 5889999999999999999
Q ss_pred eeeEeeeCCCCeeEEEECCCCC--EEEEEecCCcEEEEECCCCceEEEec------------------------------
Q 013282 268 QLSKHFRFPWPVNHSSQSPDGK--LLIIVGDNPDGLLVDSMTGKTIASLC------------------------------ 315 (446)
Q Consensus 268 ~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~------------------------------ 315 (446)
+....-.|..+|.++.|-+... .|++|+.|.+|+.||.+...++.++.
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 8877777999999999987555 89999999999999999877765541
Q ss_pred -------CC----CCceeEEEECCCCCEEEEEeCCCcEEEEEccCC-CcceEEEecCCC---------ceEEEEEccCCC
Q 013282 316 -------GH----LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-SESVAVLKGNLG---------AIRSIRYTSDGR 374 (446)
Q Consensus 316 -------~~----~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~-~~~~~~~~~~~~---------~v~~l~~s~dg~ 374 (446)
.+ .-.+.|++..++....|.|+-.|.+.|..+... .+.-.+|+.|.. +|++|+|+|...
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg 264 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG 264 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence 11 124677888888877899999999999888542 134456666652 588999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEE-EecCCcc
Q 013282 375 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG-VWDRTYG 428 (446)
Q Consensus 375 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~~D~~~~ 428 (446)
.|++++.||++.+||-.....+.....|..+|++.+|+.+|.+++-+ +.|-.-|
T Consensus 265 tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkG 319 (347)
T KOG0647|consen 265 TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKG 319 (347)
T ss_pred eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccc
Confidence 99999999999999988777788878899999999999999987754 5555444
No 93
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.9e-26 Score=218.99 Aligned_cols=226 Identities=15% Similarity=0.236 Sum_probs=203.2
Q ss_pred EEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee
Q 013282 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~ 269 (446)
|.|+.. .++.+++||.+-.+-+|.+...... ..+.+|..+|.++.| ++... +|++|+.+|+|++||++..+.
T Consensus 31 v~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i---~S~~~hespIeSl~f--~~~E~-LlaagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 31 VGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI---TSLTGHESPIESLTF--DTSER-LLAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred hceeeeeccceeeccCCCceeeccccccCCchh---heeeccCCcceeeec--Ccchh-hhcccccCCceeeeehhhhhh
Confidence 445443 6789999999999999998776433 346789999999998 67665 799999999999999999999
Q ss_pred eEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 013282 270 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 270 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~ 348 (446)
++++. |...+..+.|+|-+.+++.|+.|..+.+||++...+.+.+.+|...+..++|+|+|+++++|+.|.+++|||+.
T Consensus 105 vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence 88887 88899999999999999999999999999999888999999999999999999999999999999999999996
Q ss_pred CCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEec
Q 013282 349 NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 349 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D 424 (446)
. ++.+..|.+|.+.+.++.|+|..-.+++|+.|++|++||+++...+.........|.+..|+|+++.+++|...
T Consensus 185 a-gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 185 A-GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred c-cccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 5 89999999999999999999999999999999999999999988877777778899999999999988877443
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=189.50 Aligned_cols=282 Identities=15% Similarity=0.153 Sum_probs=213.2
Q ss_pred ccccccceeeccceeeeEEecccCeEEEecCCeEEEEec--CCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe
Q 013282 120 NSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSS--LTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV 197 (446)
Q Consensus 120 ~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~--~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~ 197 (446)
.++.+++.-+|+....++.|.-.+.+ .++.+ ........+.+.+ .+|-+.+|
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~l--------rifqvDGk~N~~lqS~~l~~------------------fPi~~a~f 265 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTL--------RIFQVDGKVNPKLQSIHLEK------------------FPIQKAEF 265 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcE--------EEEEecCccChhheeeeecc------------------Cccceeee
Confidence 35577788888877777666544333 33332 2222233333332 24555555
Q ss_pred --CCc-EEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee
Q 013282 198 --KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 198 --~~~-~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (446)
+|. .+++++....++.||+.+.+..............+....+ +|+++ +|+..+..|.|.+....+++.+..++
T Consensus 266 ~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV--Shd~~-fia~~G~~G~I~lLhakT~eli~s~K 342 (514)
T KOG2055|consen 266 APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV--SHDSN-FIAIAGNNGHIHLLHAKTKELITSFK 342 (514)
T ss_pred cCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEe--cCCCC-eEEEcccCceEEeehhhhhhhhheee
Confidence 777 8999999999999999877654322222222334555556 89988 68888899999999999999999999
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCC-CceeEEEECCCCCEEEEEeCCCcEEEEEccC----
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDLRN---- 349 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~---- 349 (446)
.++.|..+.|+.+++.|++++.+|.|++||++...+++.+.... -.-+++|.+++|.+||+||..|.|.|||..+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 99999999999999999999999999999999999999887321 2346778889999999999999999999642
Q ss_pred -CCcceEEEecCCCceEEEEEccCCCEEEEEeC--CCeEEEEEcCCCeeEeEeec---cccCeEEEEEcCCCCcEEEEEe
Q 013282 350 -LSESVAVLKGNLGAIRSIRYTSDGRYMATAEP--ADFVHVYDVKSGYEKEQEID---FFGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 350 -~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~--dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~ 423 (446)
..+++..+..-...|++++|+||++.||.+|. ...+++-.+.+......++. .-+.|+|++|||.|.+|++|..
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 23566666666778999999999999998875 56799999887655444443 2357999999999999999999
Q ss_pred cCCcceE
Q 013282 424 DRTYGSL 430 (446)
Q Consensus 424 D~~~~~~ 430 (446)
.|.+..|
T Consensus 503 ~grv~l~ 509 (514)
T KOG2055|consen 503 AGRVHLF 509 (514)
T ss_pred CCceeeE
Confidence 9887644
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=5.3e-25 Score=185.92 Aligned_cols=198 Identities=20% Similarity=0.245 Sum_probs=170.7
Q ss_pred EeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee---CCCCeeEEEECC-CCCEEEEEecCCcEEE
Q 013282 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNHSSQSP-DGKLLIIVGDNPDGLL 302 (446)
Q Consensus 227 ~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp-~~~~l~~~~~d~~i~i 302 (446)
.+.+|.+.+.++.+ +.+|. .+++|+.|+++.+|+++..+...... |...|-.++|+| ...+|++++.+.+|++
T Consensus 15 ~~~~~~~~v~Sv~w--n~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAW--NCDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEE--cccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 34567777888877 88888 59999999999999998876555443 777899999988 6778999999999999
Q ss_pred EECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCC-------------------------------
Q 013282 303 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS------------------------------- 351 (446)
Q Consensus 303 ~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~------------------------------- 351 (446)
||+++++++..+....+.+ -++|+|+|.+++.++.|..|.+.|.|+..
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 9999999999887555554 47899999999999999999999876422
Q ss_pred ---------cceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 352 ---------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 352 ---------~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
++++.+++|.....||.|+|+|+++|+|+.|..+.+||+...-+.+.+..+..+|..++||.+|++||+|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 34556678888888999999999999999999999999999888999999999999999999999999999
Q ss_pred ecCCcc
Q 013282 423 WDRTYG 428 (446)
Q Consensus 423 ~D~~~~ 428 (446)
.|.-|-
T Consensus 251 EDh~ID 256 (313)
T KOG1407|consen 251 EDHFID 256 (313)
T ss_pred ccceEE
Confidence 997764
No 96
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.9e-24 Score=194.23 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=190.1
Q ss_pred ceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC--
Q 013282 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-- 265 (446)
Q Consensus 190 ~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~-- 265 (446)
.+|.|++- .|.+|+.|+..|.|++|.+.++... .+...|-..|+++.| +-+|. +|++|++||.|.+|.+.
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---~v~~aHYQ~ITcL~f--s~dgs-~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILL---NVLSAHYQSITCLKF--SDDGS-HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHH---HHHHhhccceeEEEE--eCCCc-EEEecCCCccEEEEEEEee
Confidence 36888887 7888888889999999999988644 555788899999998 88887 79999999999999763
Q ss_pred -------cceeeEeee-CCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEE
Q 013282 266 -------KYQLSKHFR-FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 335 (446)
Q Consensus 266 -------~~~~~~~~~-~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s 335 (446)
+-+++..+. |.-+|+.+.+.+. ..+|++++.|.++++||+..|..+.++. ....+.+++..|.++.++.
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEe
Confidence 244666676 8899999998764 4589999999999999999999888876 6678999999999999999
Q ss_pred EeCCCcEEEEEccCCC---------------cceEEEecCCC--ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeE
Q 013282 336 GNQDKTCRIWDLRNLS---------------ESVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 336 gs~d~~v~iwd~~~~~---------------~~~~~~~~~~~--~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 398 (446)
|+.+|.|.+.++.... ..+..+.+|.+ +|+|++.+-||..|++|+.||.|+|||+.+.+++++
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 9999999998875432 23456788988 999999999999999999999999999999988888
Q ss_pred eeccccCeEEEEEcCCCCcEEE
Q 013282 399 EIDFFGEISGISFSPDTESLFI 420 (446)
Q Consensus 399 ~~~~~~~v~~~~~spdg~~l~~ 420 (446)
+....++|+.+.+.|-.+..+.
T Consensus 315 l~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 315 LQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred HhhhccccceeEeeccccceec
Confidence 8777899999999775444443
No 97
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-23 Score=189.28 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=175.2
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEe------------------ecCCCceeeEEEEeCCCCCeEEEEEeCCCcE
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTT------------------YDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~------------------~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v 259 (446)
.|+++|.|+.+-.|.|||+.-........++ .+|...|-++.+ +..-..+|++||.|.+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~--n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW--NRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh--ccccceeEEecCCCceE
Confidence 4789999999999999999744322111111 245555656655 66667799999999999
Q ss_pred EEEecCcceeeEeee-CCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC-CCCEEEEE
Q 013282 260 RDFDMGKYQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATG 336 (446)
Q Consensus 260 ~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sg 336 (446)
++||+.++++..++. |..+|+++.|+| ....|++|+.|++|.+.|+|........-...+.|..++|+| ....++++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999 899999999999 667889999999999999994322222222467899999999 55778888
Q ss_pred eCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCCeeEeEeecc---ccCeEEEEEc
Q 013282 337 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDF---FGEISGISFS 412 (446)
Q Consensus 337 s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s 412 (446)
+.||+|+-+|+|+.++++.++++|.++|++|++++.- .+|++++.++.|++|++...... ....| -+...|+++.
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-SVKEHSFKLGRLHCFALD 427 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-ccccccccccceeecccC
Confidence 8999999999999999999999999999999998865 47889999999999998753321 11112 2457788888
Q ss_pred CCCCcE-EEEEecC
Q 013282 413 PDTESL-FIGVWDR 425 (446)
Q Consensus 413 pdg~~l-~~~~~D~ 425 (446)
|+-.++ ++|+..+
T Consensus 428 ~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKA 441 (463)
T ss_pred CCcceEEEecCccc
Confidence 876654 4454444
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-22 Score=167.46 Aligned_cols=238 Identities=15% Similarity=0.184 Sum_probs=193.9
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCee--eEEEEeecCCCceeeEEEEeCCC-CCeEEEEE-eCCCcEEEEec
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPS-GAVHFTAS-NNDCGVRDFDM 264 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~i~~~~s~~-~~~~l~s~-s~dg~v~iwd~ 264 (446)
.|+|.+| .|.+|++|+.|.+|++..++..... -.-..+.-|.+.|..++|.-.|. +..+|+++ ..|..|++-|.
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 6888888 8999999999999999776543211 11123445788889888875554 33455554 46788888899
Q ss_pred CcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecC--C-----CCceeEEEECCCCCEEEEE
Q 013282 265 GKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--H-----LDFSFASAWHPNGVTFATG 336 (446)
Q Consensus 265 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~-----~~~v~~~~~~p~~~~l~sg 336 (446)
.+++..+.+. |.+.|.++- +-++-++++|+.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|
T Consensus 171 ~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 9999999888 888777653 34688999999999999999999888888752 2 3578999999999999999
Q ss_pred eCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC----eeEeEeeccccCeEEEEEc
Q 013282 337 NQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFFGEISGISFS 412 (446)
Q Consensus 337 s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s 412 (446)
-.|..+.+||+|. +++++.+..|+..|+++.|+|.-.||++++.|..|++-|++.. -.+.....|...+..+.|+
T Consensus 250 ~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 250 HADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred cCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 9999999999976 8999999999999999999999999999999999999998742 1334445688889999999
Q ss_pred CCCCcEEEEEecCCcceE
Q 013282 413 PDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 413 pdg~~l~~~~~D~~~~~~ 430 (446)
|..-.+++.+.|.+.--|
T Consensus 329 ~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLW 346 (350)
T ss_pred CccceeeeccCcceEEEe
Confidence 998888899999876544
No 99
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=195.35 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=165.4
Q ss_pred cCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee---------CCCCeeEEEECCCCCEEEEEecCCcE
Q 013282 230 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---------FPWPVNHSSQSPDGKLLIIVGDNPDG 300 (446)
Q Consensus 230 ~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~v~~~~~sp~~~~l~~~~~d~~i 300 (446)
+..+.+.+..| +|+|. +|++|+-||.|.+|+..+|+..+.++ +..+|.|+.||.|...+++|+.||.|
T Consensus 211 g~KSh~EcA~F--SPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARF--SPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred ccccchhheee--CCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 45556677777 99998 79999999999999999988765433 57789999999999999999999999
Q ss_pred EEEECCCCceEEEec-CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEE
Q 013282 301 LLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379 (446)
Q Consensus 301 ~i~d~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 379 (446)
++|.+++|++++.|. +|...|+|+.|+.++..+++++.|.++||.-+.. ++++..+.+|+.-|+.+.|+++|.+++++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999999999997 8999999999999999999999999999999965 99999999999999999999999999999
Q ss_pred eCCCeEEEEEcCCCeeEeEeec--cccCeEEEEEcCC-CCcEEEE
Q 013282 380 EPADFVHVYDVKSGYEKEQEID--FFGEISGISFSPD-TESLFIG 421 (446)
Q Consensus 380 ~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~spd-g~~l~~~ 421 (446)
+.||+|++|+.+++.++.++.. ...+|+++..-|. ...+++|
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 9999999999999988877764 3456777777664 3344444
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2.1e-24 Score=197.31 Aligned_cols=268 Identities=16% Similarity=0.189 Sum_probs=213.2
Q ss_pred cccCeEEEecCCeEEEEecCCCC-ceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEEeccCCcEEEEEcCC
Q 013282 140 TSKHDVYLMSHFSVIHWSSLTSS-RSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDR 218 (446)
Q Consensus 140 ~~~~~v~~~~~~~i~~w~~~~~~-~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~tg~~dg~i~vw~~~~ 218 (446)
.....||....+-|++||+.-.. ...+-.+. +-..++++ +-+-|..+|+.|++||.-.++.|||+..
T Consensus 429 ~~trhVyTgGkgcVKVWdis~pg~k~PvsqLd------cl~rdnyi------RSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 429 NPTRHVYTGGKGCVKVWDISQPGNKSPVSQLD------CLNRDNYI------RSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred CCcceeEecCCCeEEEeeccCCCCCCcccccc------ccCcccce------eeeEecCCCceEEeccccceeeeeeccC
Confidence 46678999999999999974331 11111111 11222222 2223334999999999999999999988
Q ss_pred CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecC
Q 013282 219 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDN 297 (446)
Q Consensus 219 ~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 297 (446)
+.......+. ...-...++++ +|+.+ +.+++..||.|.|||+.....++.|+ |+..+.|+.++++|..|.+|+-|
T Consensus 497 pTprikaelt-ssapaCyALa~--spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 497 PTPRIKAELT-SSAPACYALAI--SPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred CCcchhhhcC-Ccchhhhhhhc--CCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 7644222211 11123455666 99987 68888899999999999999999999 99999999999999999999999
Q ss_pred CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEE
Q 013282 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 377 (446)
Q Consensus 298 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 377 (446)
.+|+.||+++++.+.... ....|+++..+|++.+++.|-.++.+.|-... +.....+.-|..-|.++.|.+-|++++
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC--CccceeecccccEEEEEEecccCceee
Confidence 999999999987665433 46789999999999999999999999988874 455677778899999999999999999
Q ss_pred EEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 378 TAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 378 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
+.+.|+.+..|.+.-|..+++.. ..+.|.++.+|-|.+++++|+.|...
T Consensus 650 StGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred ecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcce
Confidence 99999999999998888777765 45789999999999999999988543
No 101
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=4.2e-23 Score=175.03 Aligned_cols=221 Identities=20% Similarity=0.282 Sum_probs=175.4
Q ss_pred cCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEE
Q 013282 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR 226 (446)
Q Consensus 149 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~ 226 (446)
.|....+|-+.++ ..+-...||. | .|.|+.. +.+.|++|+.|.++++||+.+++.....
T Consensus 30 KD~~~~vw~s~nG--erlGty~GHt-------G---------avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~- 90 (327)
T KOG0643|consen 30 KDSTPTVWYSLNG--ERLGTYDGHT-------G---------AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW- 90 (327)
T ss_pred CCCCceEEEecCC--ceeeeecCCC-------c---------eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe-
Confidence 3556788988777 4444556653 2 5888877 8899999999999999999998765433
Q ss_pred EeecCCCceeeEEEEeCCCCCeEEEEE----eCCCcEEEEecC-------cceeeEeee-CCCCeeEEEECCCCCEEEEE
Q 013282 227 TTYDDNAITNAVEIYGSPSGAVHFTAS----NNDCGVRDFDMG-------KYQLSKHFR-FPWPVNHSSQSPDGKLLIIV 294 (446)
Q Consensus 227 ~~~~~~~~v~~i~~~~s~~~~~~l~s~----s~dg~v~iwd~~-------~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~ 294 (446)
....+|..+.| ++.|...+++. +..+.|.++|++ ..++...+. +...++.+.|.|-++.|++|
T Consensus 91 ---k~~~~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 91 ---KTNSPVKRVDF--SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred ---ecCCeeEEEee--ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 34567888888 88887544443 345789999987 345555555 77889999999999999999
Q ss_pred ecCCcEEEEECCCCce-EEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCC----------------------
Q 013282 295 GDNPDGLLVDSMTGKT-IASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS---------------------- 351 (446)
Q Consensus 295 ~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~---------------------- 351 (446)
..+|.|.+||+++|+. +...+.|...|+.++++|+..+++|+|.|.+-++||.+...
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccce
Confidence 9999999999999854 55557799999999999999999999999999999985421
Q ss_pred --------------------------------cceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 013282 352 --------------------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 352 --------------------------------~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~ 393 (446)
+.+..+++|-++|++++|+|+|+..++|+.||.|++.-....
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 011224678899999999999999999999999999866543
No 102
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=192.72 Aligned_cols=234 Identities=18% Similarity=0.205 Sum_probs=184.2
Q ss_pred eeEEecccCeEEE-ecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcE
Q 013282 135 NLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGEL 211 (446)
Q Consensus 135 ~l~~~~~~~~v~~-~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i 211 (446)
.++|++....+.. ..+..+..||+.++.....+... + +..+.+.+| ||..+++|+.|+++
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~----------------~~S~~sc~W~pDg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-L----------------GFSVSSCAWCPDGFRFVTGSPDRTI 336 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-c----------------CCCcceeEEccCCceeEecCCCCcE
Confidence 3456665544433 44666899999888654443322 1 124666666 99999999999999
Q ss_pred EEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEE
Q 013282 212 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLL 291 (446)
Q Consensus 212 ~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l 291 (446)
..|+++.+... +-. ......|..+++ +++|+. +++...|..|++++.++......+....+|+++.+|.+++++
T Consensus 337 ~~wdlDgn~~~-~W~--gvr~~~v~dlai--t~Dgk~-vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~ 410 (519)
T KOG0293|consen 337 IMWDLDGNILG-NWE--GVRDPKVHDLAI--TYDGKY-VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLA 410 (519)
T ss_pred EEecCCcchhh-ccc--ccccceeEEEEE--cCCCcE-EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEE
Confidence 99999765321 111 112234677777 899995 555569999999999887777777777889999999999999
Q ss_pred EEEecCCcEEEEECCCCceEEEecCCCC--ceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEE
Q 013282 292 IIVGDNPDGLLVDSMTGKTIASLCGHLD--FSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIR 368 (446)
Q Consensus 292 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~ 368 (446)
++--.+..+++||+...+.++.+.||.. .+...+|.. +..++|+||.|+.|+||+.++ ++++.++.||...|++++
T Consensus 411 LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVS 489 (519)
T ss_pred EEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEe
Confidence 9999999999999999999999999875 455567766 558999999999999999976 899999999999999999
Q ss_pred EccCC-CEEEEEeCCCeEEEEEcCC
Q 013282 369 YTSDG-RYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 369 ~s~dg-~~l~~~~~dg~i~iwd~~~ 392 (446)
|+|.. ..+|+|+.||+|+||-...
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCc
Confidence 99966 5789999999999997653
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=198.72 Aligned_cols=256 Identities=14% Similarity=0.171 Sum_probs=203.8
Q ss_pred eEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEE-EEe---CCcEEEEeccCCcEEEEEcCCC
Q 013282 144 DVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVST-LAV---KDKLLVAGGFQGELICKHLDRP 219 (446)
Q Consensus 144 ~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~-l~~---~~~~l~tg~~dg~i~vw~~~~~ 219 (446)
.+..+.++++.+|.-....-.....+.|+.. .|.+ +++ ++..|++|+.|+.|.+|.+...
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g----------------~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKG----------------FIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcc----------------eeeccceeccccCcceEeecccceEEEEecCCC
Confidence 4444558899999875554333333333211 1222 444 6678999999999999999877
Q ss_pred CeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCC
Q 013282 220 GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNP 298 (446)
Q Consensus 220 ~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~ 298 (446)
.+. .++.+|.+.|.++.+ ..++ .+++||+|.++++|-+. ++...+. |+.+|.+++.-|++ .+++|+.|.
T Consensus 92 ~P~---~~LkgH~snVC~ls~--~~~~--~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 92 EPL---YTLKGHKSNVCSLSI--GEDG--TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred Cch---hhhhccccceeeeec--CCcC--ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 654 567799999999876 4444 48999999999999864 3334455 99999999999977 899999999
Q ss_pred cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEE
Q 013282 299 DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMAT 378 (446)
Q Consensus 299 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 378 (446)
+|++|.- ++.+++|.+|.+.|..+++-|++ .|++++.||.|++|++ . +.++..+.+|..-|.+++..+++..+++
T Consensus 162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~-ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-D-GEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred eeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-c-CceeeeeeccceEEEEEEecCCCCeEEE
Confidence 9999975 78899999999999999998875 5889999999999999 4 8899999999999999998888889999
Q ss_pred EeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEEE
Q 013282 379 AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 433 (446)
Q Consensus 379 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~ 433 (446)
++.|++++||+.. .+.+.+.-..-.|.++.+-++|. +++|+.||.+..+-+-
T Consensus 237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 9999999999866 45555554444899999998887 6789999988876544
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=182.57 Aligned_cols=260 Identities=15% Similarity=0.223 Sum_probs=211.7
Q ss_pred ecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEc------CCC
Q 013282 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHL------DRP 219 (446)
Q Consensus 148 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~------~~~ 219 (446)
+.|.+..+|...++ ..+....||.. .|.++.| .+.++++++-|++-.||.. ..+
T Consensus 167 SADhTA~iWs~Esg--~CL~~Y~GH~G----------------SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~ 228 (481)
T KOG0300|consen 167 SADHTARIWSLESG--ACLATYTGHTG----------------SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSN 228 (481)
T ss_pred ccccceeEEeeccc--cceeeeccccc----------------ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCC
Confidence 44788999999998 56667777654 5889988 7889999999999999972 110
Q ss_pred -------------------------------CeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 220 -------------------------------GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 220 -------------------------------~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
........+.+|.+.|.+..| -..|. .++++++|.+..+||+++++
T Consensus 229 ~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW--L~gg~-Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 229 NAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW--LAGGQ-QMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh--hcCcc-eeeeeeccccceeeeeccCc
Confidence 000111223567777877776 44555 69999999999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-CceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
++..+. |...++.++-+|..+++++++.|.+.++||.+. -..+..|+||.+.|+++.|.-+. .+++|+.|.+|++||
T Consensus 306 ~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 306 VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWD 384 (481)
T ss_pred eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEee
Confidence 999988 899999999999999999999999999999983 35678899999999999998754 689999999999999
Q ss_pred ccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEe-----eccccCeEEEEEcCCC--CcEE
Q 013282 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE-----IDFFGEISGISFSPDT--ESLF 419 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~spdg--~~l~ 419 (446)
++++..++.++.. ..+++.++.+..+..||.--.+..|++||+... .+..+ .+|..-|+|++|..+- .-|+
T Consensus 385 LrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf 462 (481)
T KOG0300|consen 385 LRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEEHPACNLF 462 (481)
T ss_pred eccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeeeeeeccccCcccccc
Confidence 9999999999986 568999999999899999888999999998754 33333 3577789999998643 3588
Q ss_pred EEEecCCcceEE
Q 013282 420 IGVWDRTYGSLL 431 (446)
Q Consensus 420 ~~~~D~~~~~~l 431 (446)
+++.|+.+-.|-
T Consensus 463 tcGFDR~v~gW~ 474 (481)
T KOG0300|consen 463 TCGFDRMVAGWK 474 (481)
T ss_pred cccccceeeeeE
Confidence 999998876663
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.3e-23 Score=200.24 Aligned_cols=262 Identities=18% Similarity=0.264 Sum_probs=205.6
Q ss_pred cccCeEEEecCCeEEEEecCCC-CceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEEeccCCcEEEEEcCC
Q 013282 140 TSKHDVYLMSHFSVIHWSSLTS-SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDR 218 (446)
Q Consensus 140 ~~~~~v~~~~~~~i~~w~~~~~-~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~tg~~dg~i~vw~~~~ 218 (446)
.+.+.+....++.|++|+..+. ..-..+...| ..|++++...++|++|+.+++|.+|.+..
T Consensus 24 ~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g------------------~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 24 DGEFICTCGSDGDIRKWKTNSDEEEPETIDISG------------------ELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred CCCEEEEecCCCceEEeecCCcccCCchhhccC------------------ceeEEEeecccceEEeeccceEEEeeCCC
Confidence 4556666677899999998666 3333333222 26889999889999999999999999987
Q ss_pred CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecC
Q 013282 219 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDN 297 (446)
Q Consensus 219 ~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 297 (446)
+.... ++.-..-++..+++ +.+|+ .++.||.|-.|++.++........+. |..+|.++.|+|++++||+.+-|
T Consensus 86 ~~~~~---iL~Rftlp~r~~~v--~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d 159 (933)
T KOG1274|consen 86 GEEDT---ILARFTLPIRDLAV--SGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD 159 (933)
T ss_pred CCccc---eeeeeeccceEEEE--ecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC
Confidence 65331 11112235677777 88887 69999999999999998887777777 99999999999999999999999
Q ss_pred CcEEEEECCCCceEEEecCC--------CCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEec--CCCceEEE
Q 013282 298 PDGLLVDSMTGKTIASLCGH--------LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSI 367 (446)
Q Consensus 298 ~~i~i~d~~~~~~~~~~~~~--------~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~l 367 (446)
|.|++||+.++.+...+.+- ...+..++|+|+|..|+..+.|+.|++|+... ......+.. +...++.+
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccccccceEEE
Confidence 99999999999887776531 34567899999988888888999999999965 565555543 34459999
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 368 RYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 368 ~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+|+|.|+|||+++.+|.|.|||..+... ......|.+++|.|++..|-.-.+-|+.+.+
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999999999998322 2234679999999999887666555555443
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.9e-23 Score=207.75 Aligned_cols=238 Identities=18% Similarity=0.280 Sum_probs=196.9
Q ss_pred eEEEEEe--CCcEEEEec--cCCcEEEEEcCCCC---------eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC
Q 013282 191 QVSTLAV--KDKLLVAGG--FQGELICKHLDRPG---------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC 257 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~--~dg~i~vw~~~~~~---------~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg 257 (446)
+|.+++. ++..++||| .||.+++|+...-. .....-....|.+.|+++.| +|+|. +|++|+.|+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~--S~dG~-~lAsGSDD~ 91 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF--SPDGS-YLASGSDDR 91 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE--CCCCC-eEeeccCcc
Confidence 5777777 999999999 99999999875211 11223345678899999988 99998 699999999
Q ss_pred cEEEEecCc------------------ceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCC
Q 013282 258 GVRDFDMGK------------------YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 318 (446)
Q Consensus 258 ~v~iwd~~~------------------~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 318 (446)
.|.||.... .+.+..+. |+..|..++|+|++.+|++++.|++|.||+.++.+.+..+.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 22445555 99999999999999999999999999999999999999999999
Q ss_pred CceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecC------CCceEEEEEccCCCEEEEEeC----CCeEEEE
Q 013282 319 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN------LGAIRSIRYTSDGRYMATAEP----ADFVHVY 388 (446)
Q Consensus 319 ~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~------~~~v~~l~~s~dg~~l~~~~~----dg~i~iw 388 (446)
+.|..+.|.|-|++||+-+.|++|+||.+.+ ....+.+.++ ..-++.+.|||||.+|+++.. -..+.|.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 9999999999999999999999999999855 4455555443 235788999999999987642 3468999
Q ss_pred EcCCCeeEeEeeccccCeEEEEEcCC------C-------C----cEEEEEecCCcceEEE
Q 013282 389 DVKSGYEKEQEIDFFGEISGISFSPD------T-------E----SLFIGVWDRTYGSLLE 432 (446)
Q Consensus 389 d~~~~~~~~~~~~~~~~v~~~~~spd------g-------~----~l~~~~~D~~~~~~l~ 432 (446)
+-.+.+.-..+.+|.+++.++.|+|. . . .+|+|+.|+++..|..
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 98777778889999999999999981 1 1 5788999999988865
No 107
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.3e-23 Score=195.30 Aligned_cols=260 Identities=18% Similarity=0.221 Sum_probs=205.7
Q ss_pred cccceeeeeeccccccceeec--cceeeeEEe-cccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCcccc
Q 013282 110 KGASYYEFRRNSRSVKSTILH--FQLRNLVWA-TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEG 186 (446)
Q Consensus 110 ~~~~~~~f~~~~~~v~~~~~h--~~~~~l~~~-~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~ 186 (446)
-+...|-+......+....-- ...-.+.|+ .+.+......++.+.+||..+.+....+...
T Consensus 195 lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~---------------- 258 (484)
T KOG0305|consen 195 LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS---------------- 258 (484)
T ss_pred ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC----------------
Confidence 344556666655553322211 111223344 3556666677899999998777544433321
Q ss_pred CccceEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc
Q 013282 187 FTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 187 ~~~~~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
+...|.+++|++..+.+|+.+|.|..+|++...... .+..+|...|..+.+ ++++. .+++|++|+.|.|||...
T Consensus 259 -h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~--~~~~~H~qeVCgLkw--s~d~~-~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 -HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVV--STLQGHRQEVCGLKW--SPDGN-QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred -cCceeEEEeccCceEEEecCCCcEEEEEEecchhhh--hhhhcccceeeeeEE--CCCCC-eeccCCCccceEeccCCC
Confidence 122799999999999999999999999998876443 247789999999888 99998 799999999999999977
Q ss_pred ceeeEeee-CCCCeeEEEECC-CCCEEEEEe--cCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEe--CCC
Q 013282 267 YQLSKHFR-FPWPVNHSSQSP-DGKLLIIVG--DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN--QDK 340 (446)
Q Consensus 267 ~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs--~d~ 340 (446)
..++..+. |...|..++|+| ...+||+|+ .|+.|++||..+|+.+..+. -...|.+|.|++..+-|+++. .++
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 77777766 999999999999 778888875 59999999999999988876 457899999999886666543 467
Q ss_pred cEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 013282 341 TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 341 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~ 393 (446)
.|.||+... .+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 412 ~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 412 QITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 899999965 7888999999999999999999999999999999999998764
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-23 Score=179.87 Aligned_cols=180 Identities=21% Similarity=0.242 Sum_probs=142.4
Q ss_pred CCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECC---CC-----ceEEEec
Q 013282 245 SGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM---TG-----KTIASLC 315 (446)
Q Consensus 245 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~---~~-----~~~~~~~ 315 (446)
++..+|++++.|..|.+|++. |+.+..+. ....-...++||+|+++++++....|++|.+- .| +.+..|+
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 455689999999999999998 88888887 44556678899999999999999999999873 33 2356788
Q ss_pred CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCC------CcceEEE----ecCCCceEEEEEccCCCEEEEEeCCCeE
Q 013282 316 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL------SESVAVL----KGNLGAIRSIRYTSDGRYMATAEPADFV 385 (446)
Q Consensus 316 ~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~------~~~~~~~----~~~~~~v~~l~~s~dg~~l~~~~~dg~i 385 (446)
||...|..++|+|+...++|.|.||++||||+.-. .+.+.+. ....+....|..+|.|+.||.+. ...+
T Consensus 276 GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l 354 (420)
T KOG2096|consen 276 GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDL 354 (420)
T ss_pred cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCce
Confidence 99999999999999999999999999999998421 1122222 11223344899999999888654 5569
Q ss_pred EEEEcCCCeeEeEee-ccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 386 HVYDVKSGYEKEQEI-DFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 386 ~iwd~~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
++|..++|+....+. .|...|++|+|+|+|+++++++ |+-+
T Consensus 355 ~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v 396 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYV 396 (420)
T ss_pred EEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence 999999987655544 3888999999999999999875 4433
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.7e-23 Score=175.27 Aligned_cols=233 Identities=19% Similarity=0.210 Sum_probs=183.8
Q ss_pred ccCeEEEecCCeEEEEecCCCCc-eEEEecCCCCCCCCCCCCCccccCccceEEEEEe----CCcEEEEeccCCcEEEEE
Q 013282 141 SKHDVYLMSHFSVIHWSSLTSSR-SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQGELICKH 215 (446)
Q Consensus 141 ~~~~v~~~~~~~i~~w~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~----~~~~l~tg~~dg~i~vw~ 215 (446)
++..+..++|++|+++...+... ..+..+.||-.| |.-++| -|.+||+++.||+|.||.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GP----------------Vwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGP----------------VWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCC----------------eeEEeecccccCcEeeEeecCceEEEEe
Confidence 45566677788999999877665 667788887654 777777 689999999999999999
Q ss_pred cCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc--eeeEe--eeCCCCeeEEEECCC---C
Q 013282 216 LDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--QLSKH--FRFPWPVNHSSQSPD---G 288 (446)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~--~~~~~~v~~~~~sp~---~ 288 (446)
-..+... .......|.+.|+++++.++..|- +|++++.||.|.|++.... -.... ..|.-.|++++|.|- |
T Consensus 87 e~~g~w~-k~~e~~~h~~SVNsV~wapheygl-~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 87 EENGRWT-KAYEHAAHSASVNSVAWAPHEYGL-LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred cCCCchh-hhhhhhhhcccceeecccccccce-EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 8766422 233456789999999996665664 7999999999999988653 22222 238889999999985 4
Q ss_pred -----------CEEEEEecCCcEEEEECCCCc--eEEEecCCCCceeEEEECCCC----CEEEEEeCCCcEEEEEccCCC
Q 013282 289 -----------KLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPNG----VTFATGNQDKTCRIWDLRNLS 351 (446)
Q Consensus 289 -----------~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~p~~----~~l~sgs~d~~v~iwd~~~~~ 351 (446)
+.|++|+-|..|+||+..+++ .-+.|.+|.+.|..++|.|.- .+||++++||+|.||-.+...
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 679999999999999988763 345588999999999999943 589999999999999886432
Q ss_pred cc--eEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 013282 352 ES--VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 391 (446)
Q Consensus 352 ~~--~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~ 391 (446)
.+ ...+......+..+.||+.|..|+.++.|+.|.+|--.
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 22 23344456789999999999999999999999999643
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=181.09 Aligned_cols=231 Identities=17% Similarity=0.198 Sum_probs=195.1
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe-----
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD----- 263 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd----- 263 (446)
.|..++. ....+.+++.|.+-+||.++++ .|...+.+|.+.|+++.| ++.+. ++++++.|++..||.
T Consensus 150 GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikf--h~s~~-L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 150 GIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKF--HNSGL-LLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred ceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEe--ccccc-eEEEccCCcchHHHHHhhcC
Confidence 4777777 4467889999999999999888 677888999999999999 78776 799999999999995
Q ss_pred -cCcc----------------------------------eeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCC
Q 013282 264 -MGKY----------------------------------QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT 307 (446)
Q Consensus 264 -~~~~----------------------------------~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 307 (446)
+... .++..+. |...|.+..|-..|+.+++++.|.+..+||+++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 2110 0222333 667788888888999999999999999999999
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEE
Q 013282 308 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV 387 (446)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~i 387 (446)
|.++..+.||....+.++-+|..+++++.+.|.+.++||.|..-..+..|.+|...|+++.|..+. .+++|+.|.+|+|
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKv 382 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKV 382 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEE
Confidence 999999999999999999999999999999999999999998778889999999999999998875 4889999999999
Q ss_pred EEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcc
Q 013282 388 YDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 428 (446)
Q Consensus 388 wd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~ 428 (446)
||+++-+.....+...++++.++.+..+..+++--.++.++
T Consensus 383 WdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvR 423 (481)
T KOG0300|consen 383 WDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVR 423 (481)
T ss_pred eeeccccCcceeeecCCccceeEeecCCceEEeccCCceEE
Confidence 99998765555555778899999998777777665554443
No 111
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.1e-23 Score=198.43 Aligned_cols=195 Identities=19% Similarity=0.236 Sum_probs=166.7
Q ss_pred ceEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 190 TQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 190 ~~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
..|..|+| ..++|++++.|.+|++|++... .|..++ .|+..|+|++| +|....+|++|+.||.||||++...+
T Consensus 370 ~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~---~CL~~F-~HndfVTcVaF--nPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSMDKTVRLWHPGRK---ECLKVF-SHNDFVTCVAF--NPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hhheecccccCCeeEeccccccEEeecCCCc---ceeeEE-ecCCeeEEEEe--cccCCCcEeecccccceEEeecCcCe
Confidence 37999999 8999999999999999999876 444544 68899999999 89888899999999999999999988
Q ss_pred eeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEec---------CCCCceeEEEECC-CCCEEEEEeC
Q 013282 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC---------GHLDFSFASAWHP-NGVTFATGNQ 338 (446)
Q Consensus 269 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~v~~~~~~p-~~~~l~sgs~ 338 (446)
++.-.....-|++++|.|+|+..++|+.+|.+++|+....+....+. .|. .|+.+.|.| +...+++.+.
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSN 522 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecC
Confidence 88777777889999999999999999999999999998877665542 133 799999998 4445777788
Q ss_pred CCcEEEEEccCCCcceEEEecCCC--ceEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 013282 339 DKTCRIWDLRNLSESVAVLKGNLG--AIRSIRYTSDGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 339 d~~v~iwd~~~~~~~~~~~~~~~~--~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~ 392 (446)
|..|||+|.+. ..++..++++.. .-....|+.||++|++|+.|..|+||++..
T Consensus 523 DSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 523 DSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 99999999976 778888887543 234678999999999999999999999743
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=8.3e-22 Score=190.49 Aligned_cols=286 Identities=15% Similarity=0.185 Sum_probs=206.7
Q ss_pred cccccceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccC
Q 013282 108 TKKGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGF 187 (446)
Q Consensus 108 ~~~~~~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~ 187 (446)
+..+...|+|+.....++++-..|.+..+..+.. +|.|++++...+ ..++.+...+ |
T Consensus 189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~--------~G~ViifNlK~d--kil~sFk~d~-------g------ 245 (910)
T KOG1539|consen 189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE--------NGTVIIFNLKFD--KILMSFKQDW-------G------ 245 (910)
T ss_pred eccCcEEEEecccccceeEeccCCcceEEEEecc--------CceEEEEEcccC--cEEEEEEccc-------c------
Confidence 4566778999999888888877777776665554 456688888777 4445444222 1
Q ss_pred ccceEEEEEe--CCc-EEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEE--
Q 013282 188 TQTQVSTLAV--KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF-- 262 (446)
Q Consensus 188 ~~~~v~~l~~--~~~-~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iw-- 262 (446)
+|++++| ||+ .||+|+..|.+.+||++..... ..+...|.+.+....+ -|... ++++++.|..+++|
T Consensus 246 ---~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~--~v~~nah~~sv~~~~f--l~~ep-Vl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 246 ---RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI--NVTRNAHYGSVTGATF--LPGEP-VLVTAGADNSLKVWVF 317 (910)
T ss_pred ---ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee--eeeeccccCCccccee--cCCCc-eEeeccCCCceeEEEe
Confidence 6999999 664 5777888899999999866533 2233344333443333 22222 44444444444443
Q ss_pred ---------------------------------------------ecCc-------ce----------------------
Q 013282 263 ---------------------------------------------DMGK-------YQ---------------------- 268 (446)
Q Consensus 263 ---------------------------------------------d~~~-------~~---------------------- 268 (446)
++.. ++
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 2210 00
Q ss_pred ------------------------------------e-eEeeeCC------CCeeEEEECCCCCEEEEEecCCcEEEEEC
Q 013282 269 ------------------------------------L-SKHFRFP------WPVNHSSQSPDGKLLIIVGDNPDGLLVDS 305 (446)
Q Consensus 269 ------------------------------------~-~~~~~~~------~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 305 (446)
. ...+.+. ..+.+++.++-|++.+.|+..|.|-+|++
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 0 0000111 23667888888999999999999999999
Q ss_pred CCCceEEEe---cCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCC-------------------------------
Q 013282 306 MTGKTIASL---CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS------------------------------- 351 (446)
Q Consensus 306 ~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~------------------------------- 351 (446)
++|-...++ ..|..+|+.++...-++.+++++.+|.+++||..+..
T Consensus 478 QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~ 557 (910)
T KOG1539|consen 478 QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFS 557 (910)
T ss_pred ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCcee
Confidence 999888888 4799999999999888999999999999999985311
Q ss_pred ---------cceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 352 ---------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 352 ---------~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
+.++.+.+|.+.|++++|||||++|++++.|++|++||+.++.++-.+. ...+..++.|+|+|.+||++.
T Consensus 558 I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 558 IRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred EEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEE
Confidence 1223456899999999999999999999999999999999997765543 667899999999999999998
Q ss_pred ecC
Q 013282 423 WDR 425 (446)
Q Consensus 423 ~D~ 425 (446)
.|.
T Consensus 637 vd~ 639 (910)
T KOG1539|consen 637 VDQ 639 (910)
T ss_pred ecC
Confidence 774
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.4e-24 Score=189.74 Aligned_cols=227 Identities=15% Similarity=0.214 Sum_probs=191.1
Q ss_pred eEEEEEeCC---cEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAVKD---KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~~~---~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.|.||+-+. ..+++|+.||.|++||+... .|..++..|.+.|..|.+ .. . .+++++.|.+|+.|-++.
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v--~~--~-~~~tvgdDKtvK~wk~~~- 138 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICV--TQ--T-SFFTVGDDKTVKQWKIDG- 138 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEe--cc--c-ceEEecCCcceeeeeccC-
Confidence 478887733 56899999999999999776 456788899999999998 33 2 588899999999999866
Q ss_pred eeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCC-CCEEEEEeCCCcEEEEE
Q 013282 268 QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN-GVTFATGNQDKTCRIWD 346 (446)
Q Consensus 268 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~d~~v~iwd 346 (446)
.+++++.....+..+.-+..++.++++|.+ |.|||.+-..++..+.-..+.|.++.|+|. -.+|++|..|+.|.|||
T Consensus 139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 139 PPLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred CcceeeeccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 477777777778888877778889998865 999999988999999878889999999994 46778888999999999
Q ss_pred ccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe-eEeEeeccccCeEEEEEcCCCCcEEEEEecC
Q 013282 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDTESLFIGVWDR 425 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~ 425 (446)
+|. ..+++.+.- ...-+.|+|+|.+-.+++|+.|..++.||++... ++....+|.+.|.++.|||.|+-+++|+.|.
T Consensus 217 ~R~-~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 217 LRQ-ASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred ccc-CCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 988 666666543 3356789999988888899999999999999754 5566778999999999999999999999999
Q ss_pred CcceE
Q 013282 426 TYGSL 430 (446)
Q Consensus 426 ~~~~~ 430 (446)
+|+.+
T Consensus 295 sIRIf 299 (433)
T KOG0268|consen 295 SIRIF 299 (433)
T ss_pred eEEEe
Confidence 98764
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=2.7e-24 Score=192.36 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=197.2
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|..+.| +...|++||.|..|++|++...+. ....++.+..+.++.+++ .+++. .++++++|+.+++|++...+
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-~~~~tLaGs~g~it~~d~--d~~~~-~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-ELISTLAGSLGNITSIDF--DSDNK-HVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhcccchh-hhhhhhhccCCCcceeee--cCCCc-eEEeecCCCceeeeeccchh
Confidence 6777788 558999999999999999876652 224566778888999998 78887 68888899999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
...++. |...|+++.|......+++|+.|.+|++||+....+.+++- ....+..|+.+ +..+++|..|++||+||+
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEec
Confidence 999988 99999999998877779999999999999999988777654 23455666655 567899999999999999
Q ss_pred cCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeecc----ccCeEEEEEcCCCCcEEEEEe
Q 013282 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF----FGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~ 423 (446)
|. ..+......+ +.|+++..+++|..|.+++.|.++.+.|+++......+... ...++.+.|||++.|+++|+.
T Consensus 330 Rs-~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 330 RS-ADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred cC-CceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 87 6777777775 48999999999999999999999999999998766665542 235889999999999999999
Q ss_pred cCCcceEEEEe
Q 013282 424 DRTYGSLLEYG 434 (446)
Q Consensus 424 D~~~~~~l~~~ 434 (446)
||.+..|-.+.
T Consensus 408 dgsv~iW~v~t 418 (459)
T KOG0288|consen 408 DGSVYIWSVFT 418 (459)
T ss_pred CCcEEEEEccC
Confidence 99998775443
No 115
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.1e-22 Score=173.53 Aligned_cols=261 Identities=13% Similarity=0.195 Sum_probs=197.4
Q ss_pred ceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceE
Q 013282 113 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQV 192 (446)
Q Consensus 113 ~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v 192 (446)
+.|.|..|...+++.++ .+...+..++|.+|.+||..+...... +-. |.| .|
T Consensus 35 ~lF~~~aH~~sitavAV----------s~~~~aSGssDetI~IYDm~k~~qlg~--ll~-------Hag---------si 86 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV----------SGPYVASGSSDETIHIYDMRKRKQLGI--LLS-------HAG---------SI 86 (362)
T ss_pred ccccccccccceeEEEe----------cceeEeccCCCCcEEEEeccchhhhcc--eec-------ccc---------ce
Confidence 46777777666655543 344455556678899999866632211 111 222 69
Q ss_pred EEEEeC----CcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 193 STLAVK----DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 193 ~~l~~~----~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
+++.|. ...|++|+.||.|.+|+...= .+...+..|.+.|+.+++ +|.|+ +.++.+.|+.++.|++-+|+
T Consensus 87 taL~F~~~~S~shLlS~sdDG~i~iw~~~~W---~~~~slK~H~~~Vt~lsi--HPS~K-LALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 87 TALKFYPPLSKSHLLSGSDDGHIIIWRVGSW---ELLKSLKAHKGQVTDLSI--HPSGK-LALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred EEEEecCCcchhheeeecCCCcEEEEEcCCe---EEeeeecccccccceeEe--cCCCc-eEEEEcCCceeeeehhhcCc
Confidence 999992 237999999999999997543 456778899999999999 99998 68888899999999999988
Q ss_pred eeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 013282 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 269 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~ 348 (446)
.-...+.......+.|+|.|.+++.++.+ .|-+|.+.+.+....+.. ...+.++.|- ++..|++|..|+.|++||..
T Consensus 161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 161 VAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred cceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccC
Confidence 77766655555669999999999988877 588999887776665542 3445666654 67789999999999999996
Q ss_pred CCCcceEEEecCCCceEEEEE--ccCCCEEEEEeCCCeEEEEEcCCCe-----eEeEeeccccCeEEEEEc
Q 013282 349 NLSESVAVLKGNLGAIRSIRY--TSDGRYMATAEPADFVHVYDVKSGY-----EKEQEIDFFGEISGISFS 412 (446)
Q Consensus 349 ~~~~~~~~~~~~~~~v~~l~~--s~dg~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s 412 (446)
. ..+...+.+|...|..+.+ .|++.+|++++.||.|+|||+.... .+. ......+++|+...
T Consensus 238 s-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~-e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 238 S-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLA-ELNTNVRLTCLRVK 306 (362)
T ss_pred C-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeE-EeecCCccceeeeh
Confidence 5 8899999999999999984 5678999999999999999998752 222 22234556666543
No 116
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=189.33 Aligned_cols=234 Identities=15% Similarity=0.197 Sum_probs=195.2
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|.|||+ +.+.||.+-.+|.|.+|++...-.. ...+..+.+..|.+++| ++.+ .|++.+.+|+|.-||+.+++
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-~~vi~g~~drsIE~L~W--~e~~--RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-EPVIHGPEDRSIESLAW--AEGG--RLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCcee-eEEEecCCCCceeeEEE--ccCC--eEEeecCCceEEEEecccCc
Confidence 7999999 7788999999999999999875322 23444456778888887 6555 48888999999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEE--ecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS--LCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
++..+. ..++|.+++.+|.+..+++|++||.+++++...++.... |...++.|.+++|+|++..+++|+.||.|++|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 998888 788899999999999999999999888888877765443 44567899999999999999999999999999
Q ss_pred EccCCCcceEEEe-----c---CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCc
Q 013282 346 DLRNLSESVAVLK-----G---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTES 417 (446)
Q Consensus 346 d~~~~~~~~~~~~-----~---~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 417 (446)
|... +..+.... . ...-|+++.|-.++ .|++|...|+|++||...+..++....|.+.|.+++..+++.+
T Consensus 182 d~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 182 DVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR 259 (691)
T ss_pred EcCC-CceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence 9966 44444211 1 22347788888776 5899999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcceEE
Q 013282 418 LFIGVWDRTYGSLL 431 (446)
Q Consensus 418 l~~~~~D~~~~~~l 431 (446)
+++++.|+++-.+.
T Consensus 260 vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYS 273 (691)
T ss_pred EEEccCCCceEEEE
Confidence 99999998875443
No 117
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=5.1e-23 Score=195.45 Aligned_cols=236 Identities=18% Similarity=0.188 Sum_probs=196.3
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC-cc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KY 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~-~~ 267 (446)
.+.++++ +|++||+|..-|+|+||++..... ......|.+.|.++.+.+---+..+|++++.|.-|.+||+. ..
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 4555554 999999999999999999977643 24556788999999986544556689999999999999985 46
Q ss_pred eeeEeee-CCCCeeEEEECCCC--CEEEEEecCCcEEEEECCCCceEEEecCC-----CCceeEEEECCCCCEEEEEeCC
Q 013282 268 QLSKHFR-FPWPVNHSSQSPDG--KLLIIVGDNPDGLLVDSMTGKTIASLCGH-----LDFSFASAWHPNGVTFATGNQD 339 (446)
Q Consensus 268 ~~~~~~~-~~~~v~~~~~sp~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~l~sgs~d 339 (446)
.++.++. |...|+++.|...| ..+++++.|..|.+--.+.......+..| ...++.++..|..++++++++|
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 6777777 89999999998877 67889999987754333321112222222 3578999999999999999999
Q ss_pred CcEEEEEccCCCcceEEEec---CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCC
Q 013282 340 KTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE 416 (446)
Q Consensus 340 ~~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~ 416 (446)
..|+|||+.+ ++..+.|++ |.+....+...|.|-|||+.+.|.++.++|..+|+++.+..+|...|+++.|.+|.+
T Consensus 618 rnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 618 RNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred cceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence 9999999976 888888886 567777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCcceE
Q 013282 417 SLFIGVWDRTYGSL 430 (446)
Q Consensus 417 ~l~~~~~D~~~~~~ 430 (446)
.|++.+.||.|-.|
T Consensus 697 HlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVW 710 (1080)
T ss_pred hheeecCCceEEEE
Confidence 99999999998776
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=4.4e-23 Score=195.58 Aligned_cols=228 Identities=17% Similarity=0.190 Sum_probs=195.9
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceee-EEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA-VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|..+++ ++..+++|+.||++++|.-...+... ...+.++.+.+.. +++ .+..+..+++|+.|.+|.+|.+.+..
T Consensus 16 DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y--~e~~~~~l~~g~~D~~i~v~~~~~~~ 92 (745)
T KOG0301|consen 16 DVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICY--AESDKGRLVVGGMDTTIIVFKLSQAE 92 (745)
T ss_pred chheeEecCCeEEeecCCCCceeeeeccCccccc-ceecccCcceeecccee--ccccCcceEeecccceEEEEecCCCC
Confidence 4677777 77889999999999999975554332 3445566776666 655 33333469999999999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
++.++. |...|.|+....++. +++|+.|.++++|-. +++...+.+|+..|.+++.-|.+ .++|||.|++|++|.-
T Consensus 93 P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~ 168 (745)
T KOG0301|consen 93 PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG 168 (745)
T ss_pred chhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC
Confidence 999988 999999999887777 999999999999964 66777799999999999999987 8999999999999976
Q ss_pred cCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 348 RNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
++.++++.+|..-|+.+++-+++. +++++.||.|++|++ +|..+....+|..-|.+++..+++..+++++.|+++
T Consensus 169 ---~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 169 ---GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred ---CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceE
Confidence 688999999999999999998865 678899999999998 788999999999999999988888999999999998
Q ss_pred ceE
Q 013282 428 GSL 430 (446)
Q Consensus 428 ~~~ 430 (446)
+.|
T Consensus 244 riW 246 (745)
T KOG0301|consen 244 RIW 246 (745)
T ss_pred EEe
Confidence 766
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.4e-23 Score=190.38 Aligned_cols=235 Identities=17% Similarity=0.183 Sum_probs=188.2
Q ss_pred cceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEe--ecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec
Q 013282 189 QTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTT--YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (446)
Q Consensus 189 ~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~ 264 (446)
+.-|++++. ..+++.|||. |-|+|||+...+.......+ ......+..+.+ .|+|.. |++|+.-.+|.|||+
T Consensus 419 GEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL--~pdgrt-LivGGeastlsiWDL 494 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL--LPDGRT-LIVGGEASTLSIWDL 494 (705)
T ss_pred CcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEe--cCCCce-EEeccccceeeeeec
Confidence 334666666 5678888886 56999999876533211111 123455677777 899984 888888999999999
Q ss_pred CcceeeEe--ee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCc
Q 013282 265 GKYQLSKH--FR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 341 (446)
Q Consensus 265 ~~~~~~~~--~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~ 341 (446)
....+... +. ..-.+..++++||.+..+++..||.|.|||+.+...++.|+||.+.+.||.++++|..|.||+-|.+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 76554333 33 2335778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEE
Q 013282 342 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
||-||+|. +..++... ....|.++..+|++.+|+.|-.++.+.|-... +...+++..|.+-|.++.|.+-|+++++.
T Consensus 575 vRcWDlre-grqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 575 VRCWDLRE-GRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred eeehhhhh-hhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeec
Confidence 99999987 44333322 24579999999999999999999999998865 44667788899999999999999999999
Q ss_pred EecCCcceE
Q 013282 422 VWDRTYGSL 430 (446)
Q Consensus 422 ~~D~~~~~~ 430 (446)
+.|.-.+.|
T Consensus 652 GkDnlLnaw 660 (705)
T KOG0639|consen 652 GKDNLLNAW 660 (705)
T ss_pred Cchhhhhhc
Confidence 988776554
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3e-22 Score=195.54 Aligned_cols=232 Identities=16% Similarity=0.212 Sum_probs=191.0
Q ss_pred EEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee
Q 013282 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~ 269 (446)
.+.+++ +|.+|++++.||.|++|+....... ..+..-+...+.++.. .+. .|++|+.+++|.+|.+..++.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~--P~ti~~~g~~v~~ia~----~s~-~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE--PETIDISGELVSSIAC----YSN-HFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccC--CchhhccCceeEEEee----ccc-ceEEeeccceEEEeeCCCCCc
Confidence 444444 9999999999999999987665211 1222225556666654 333 699999999999999988876
Q ss_pred eEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 013282 270 SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 270 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~ 348 (446)
-..+. +.-++++++++.+|+++|.|++|-.|++.++.+......+++|.++|.++.|+|.+++||+.+-||.|++||+.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 65444 77889999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCcceEEEecC--------CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec--cccCeEEEEEcCCCCcE
Q 013282 349 NLSESVAVLKGN--------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID--FFGEISGISFSPDTESL 418 (446)
Q Consensus 349 ~~~~~~~~~~~~--------~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~spdg~~l 418 (446)
+ +....++.+- ...++.++|+|+|..++..+.++.|++|+..++.....+.. +...++.+.|+|.|+||
T Consensus 169 ~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 169 D-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred c-chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 5 5555554431 34567899999988888899999999999998887777765 34459999999999999
Q ss_pred EEEEecCCcceEE
Q 013282 419 FIGVWDRTYGSLL 431 (446)
Q Consensus 419 ~~~~~D~~~~~~l 431 (446)
|++..|+.+-.|=
T Consensus 248 AAs~~~g~I~vWn 260 (933)
T KOG1274|consen 248 AASTLDGQILVWN 260 (933)
T ss_pred eeeccCCcEEEEe
Confidence 9999999887664
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=9.4e-21 Score=177.03 Aligned_cols=254 Identities=16% Similarity=0.165 Sum_probs=180.4
Q ss_pred ecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEE-EEeccCCcEEEEEcCCCCeeeE
Q 013282 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLL-VAGGFQGELICKHLDRPGVSFC 224 (446)
Q Consensus 148 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l-~tg~~dg~i~vw~~~~~~~~~~ 224 (446)
..++.+.+|+..+++....+...+ .+.++++ +++.+ ++++.++.|++|++.+....
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~-------------------~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-- 66 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQ-------------------RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-- 66 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCC-------------------CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--
Confidence 347789999988775444433211 1234444 77765 67788999999999876433
Q ss_pred EEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCC-cEEEE
Q 013282 225 SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNP-DGLLV 303 (446)
Q Consensus 225 ~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~i~ 303 (446)
.....+.. +..+.+ +|+++.++++++.++.|++||+.+.+.+..+.....+.+++|+|++++++++..++ .+.+|
T Consensus 67 -~~~~~~~~-~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 67 -GTLPSGPD-PELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFI 142 (300)
T ss_pred -EeccCCCC-ccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence 22222222 334444 99998666666778999999999988888777556678999999999999888765 46778
Q ss_pred ECCCCceEEEecCCCCceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCcceEEEecCC-------CceEEEEEccCCCE
Q 013282 304 DSMTGKTIASLCGHLDFSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVLKGNL-------GAIRSIRYTSDGRY 375 (446)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg-s~d~~v~iwd~~~~~~~~~~~~~~~-------~~v~~l~~s~dg~~ 375 (446)
|..+++.+..+.. ...+.+++|+|+|++|+++ ..++.|++||++. .+.+..+..+. .....++|+|+|++
T Consensus 143 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 143 DTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred eCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCE
Confidence 9988877665542 2345779999999988655 4699999999975 55555554221 12346889999998
Q ss_pred EEEE-eCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEE-ecCCcce
Q 013282 376 MATA-EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV-WDRTYGS 429 (446)
Q Consensus 376 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~D~~~~~ 429 (446)
++++ ..++.|.+||+.+++....+ .+...+.+++|+|+|++|+++. .++.+..
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v 275 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSV 275 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEE
Confidence 6554 45678999999988766544 3455789999999999998874 3565543
No 122
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=3e-23 Score=179.32 Aligned_cols=205 Identities=17% Similarity=0.218 Sum_probs=170.0
Q ss_pred eEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-----------------c-eeeEeee-CCCCeeEEE
Q 013282 223 FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-----------------Y-QLSKHFR-FPWPVNHSS 283 (446)
Q Consensus 223 ~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~-----------------~-~~~~~~~-~~~~v~~~~ 283 (446)
+.......|++++.+-.| +++|. ++++|+.|.+|+|+|++. + -+++++. |..+|+++.
T Consensus 103 yEt~ylt~HK~~cR~aaf--s~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAF--SPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred cceEEEeecccceeeeee--CCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 335566788999998888 99998 799999999999999872 1 1344554 889999999
Q ss_pred ECCCCCEEEEEecCCcEEEEECCCCceEEEec--CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEE---e
Q 013282 284 QSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL---K 358 (446)
Q Consensus 284 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~---~ 358 (446)
|+|....|++|+.|++|+++|.......+.++ ....+|.++.|||.|.+|+.|..-.++++||+.+ .++...- .
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T-~QcfvsanPd~ 258 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT-YQCFVSANPDD 258 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc-eeEeeecCccc
Confidence 99999999999999999999997554333332 2456899999999999999999999999999965 4433222 3
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec-cc-cCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 359 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-FF-GEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 359 ~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~-~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
.|.++|+++.+++.|++.++|+.||.|++||--+++++..+.. |. ..|.+..|+.+|+++++++.|..++-|-
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 5889999999999999999999999999999888888877654 54 4799999999999999999998887653
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-21 Score=169.46 Aligned_cols=238 Identities=13% Similarity=0.111 Sum_probs=184.6
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCC-eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC--
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-- 265 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~-- 265 (446)
-|.++.| .|+.+|+|+.|++|+||+..... .-.|......|.+.|..+.+. +|.-..++++++.|+++.||.=.
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WA-hPEfGqvvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWA-HPEFGQVVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEec-CccccceEEEEecCCceeeeeeccc
Confidence 3777777 89999999999999999965443 444556667888989888887 44434489999999999999641
Q ss_pred ---c----ceeeEeee-CCCCeeEEEECC--CCCEEEEEecCCcEEEEECCCC------ceEEEec-------CCCCcee
Q 013282 266 ---K----YQLSKHFR-FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTG------KTIASLC-------GHLDFSF 322 (446)
Q Consensus 266 ---~----~~~~~~~~-~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~-------~~~~~v~ 322 (446)
. .....++. ....|..+.|.| -|-.||+++.||.++||+.... .+.+.++ .+..+..
T Consensus 94 ~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 94 SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 1 11222333 677899999999 5778999999999999987533 2233333 3667889
Q ss_pred EEEECC---CCCEEEEEeCC-----CcEEEEEccCCC---cceEEEecCCCceEEEEEccCC----CEEEEEeCCCeEEE
Q 013282 323 ASAWHP---NGVTFATGNQD-----KTCRIWDLRNLS---ESVAVLKGNLGAIRSIRYTSDG----RYMATAEPADFVHV 387 (446)
Q Consensus 323 ~~~~~p---~~~~l~sgs~d-----~~v~iwd~~~~~---~~~~~~~~~~~~v~~l~~s~dg----~~l~~~~~dg~i~i 387 (446)
|+.|+| ...+||.|+.+ +.+.||.....+ ..+..+.+|..+|+.|+|.|+- ..||+|+.|| |+|
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 999998 45788888876 479999875544 2456677999999999999963 5889999999 999
Q ss_pred EEcCCC--------------------eeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 388 YDVKSG--------------------YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 388 wd~~~~--------------------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
|.+... +.+..+.+|.++|..+.|+-.|..|++.+.||.++.|
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 998731 1234456799999999999999999999999998765
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.7e-23 Score=198.29 Aligned_cols=229 Identities=16% Similarity=0.234 Sum_probs=177.4
Q ss_pred EEEEEe--CCcEEEEeccCCcEEEEEcCCCCeee-E-EEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-
Q 013282 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSF-C-SRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 266 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~-~-~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~- 266 (446)
..+++. +-+.|+.+|. ..+.|+.++...... | .......+....+-++.|...-.++|++++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 334444 4445555554 346777665544221 1 111112222333444444655566899999999999999976
Q ss_pred --ceeeEeee-CCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC-CCCEEEEEeCCCc
Q 013282 267 --YQLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKT 341 (446)
Q Consensus 267 --~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~ 341 (446)
.+.+..|. |...++++.|++ ...+|++|+.||.|++||++..+...++.+....|..++|+| .+..|+++...|.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence 45555666 999999999998 667889999999999999999998989998899999999999 7889999999999
Q ss_pred EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeE-eeccccCeEEEEEcCCCCc-EE
Q 013282 342 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTES-LF 419 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~spdg~~-l~ 419 (446)
+++||+|.+.++...+.+|.++|.++.|+|++.+||+|+.|+.|+|||+.+++.... ......+|.++.|-|..++ |+
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA 280 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA 280 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh
Confidence 999999999999999999999999999999999999999999999999986643322 2334578999999998766 55
Q ss_pred EE
Q 013282 420 IG 421 (446)
Q Consensus 420 ~~ 421 (446)
++
T Consensus 281 tc 282 (839)
T KOG0269|consen 281 TC 282 (839)
T ss_pred hh
Confidence 44
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=8.5e-21 Score=174.00 Aligned_cols=272 Identities=15% Similarity=0.171 Sum_probs=201.5
Q ss_pred cccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe-CC
Q 013282 121 SRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV-KD 199 (446)
Q Consensus 121 ~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~-~~ 199 (446)
+..|..+.+||.-++++..-++..+|+ |....+...+...+ .+......|.|++| .+
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~F--------w~~~~~~l~k~~~~--------------fek~ekk~Vl~v~F~en 257 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYF--------WTLRGGSLVKRQGI--------------FEKREKKFVLCVTFLEN 257 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEE--------EEccCCceEEEeec--------------cccccceEEEEEEEcCC
Confidence 334566788888888887777777655 76555433222211 11122237999999 66
Q ss_pred cEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce-----------
Q 013282 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ----------- 268 (446)
Q Consensus 200 ~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~----------- 268 (446)
.-++||.++|.|.||+....... +....|.+.|.++.+ -.+|. |++|+.|..|..||-.-.+
T Consensus 258 gdviTgDS~G~i~Iw~~~~~~~~---k~~~aH~ggv~~L~~--lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 258 GDVITGDSGGNILIWSKGTNRIS---KQVHAHDGGVFSLCM--LRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred CCEEeecCCceEEEEeCCCceEE---eEeeecCCceEEEEE--ecCcc--EeecCccceEEeccccccccccccCchhcC
Confidence 67899999999999998665433 333388999999988 67775 7779999999999832100
Q ss_pred e------------------------------eEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCC
Q 013282 269 L------------------------------SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL 318 (446)
Q Consensus 269 ~------------------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 318 (446)
. +..+.|......++.+|+.+++++++.|+.++||+ ..+++.+.. -.
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~ 407 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IE 407 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ec
Confidence 0 01112455677889999999999999999999999 455554433 56
Q ss_pred CceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeE
Q 013282 319 DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 319 ~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 398 (446)
.++.|+.|+|.| .+|.|+..|...+.|+.+ ...+..-.. ..++++++|+|+|.+||.|+.|+.|+||-+........
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 788999999999 999999999999999965 444444444 78999999999999999999999999998875433322
Q ss_pred -ee-ccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 399 -EI-DFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 399 -~~-~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
.. .+..+|+.+.||+|+++|.+-+.|-.+
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ei 515 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEI 515 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEE
Confidence 22 244789999999999999988777544
No 126
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.6e-22 Score=182.14 Aligned_cols=235 Identities=14% Similarity=0.186 Sum_probs=198.3
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCee-e---E----------EEEe-ecCCCceeeEEEEeCCCCCeEEEEE
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS-F---C----------SRTT-YDDNAITNAVEIYGSPSGAVHFTAS 253 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~-~---~----------~~~~-~~~~~~v~~i~~~~s~~~~~~l~s~ 253 (446)
+|+|++. ++.+.++++.+|+|.-|++.++... . . .... ..|...+.++++ +++|+ +|++|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av--S~Dgk-ylatg 220 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV--SSDGK-YLATG 220 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE--cCCCc-EEEec
Confidence 4667766 8899999999999999998766522 0 0 0111 256666777777 99998 79999
Q ss_pred eCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCE
Q 013282 254 NNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 332 (446)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 332 (446)
+.|..|.||+..+.+.++.+. |...|.+++|-.....|++++.|..|++|++.....+.++.+|.+.|.++....-++.
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~ 300 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERC 300 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccce
Confidence 999999999999999999988 9999999999988889999999999999999988889999999999999988888888
Q ss_pred EEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec-c---------
Q 013282 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-F--------- 402 (446)
Q Consensus 333 l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~--------- 402 (446)
+-+|+.|+++++|++. ......+.++.+.+-|++|-.+ .++++|+.+|.|.+|++.+.++++.... |
T Consensus 301 vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 301 VTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred EEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcccc
Confidence 8888899999999994 4556677888889999999765 5788999999999999998877765542 2
Q ss_pred --ccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 403 --FGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 403 --~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
...|++++..|...++++|+++|.++-|-
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEE
Confidence 12789999999999999999999998764
No 127
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=4.2e-22 Score=173.21 Aligned_cols=226 Identities=19% Similarity=0.221 Sum_probs=185.1
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec-CcceeeE---ee
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GKYQLSK---HF 273 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~-~~~~~~~---~~ 273 (446)
+.+++++.+.+.-|.+||.-+++.....+...+......+..+.|+|+|. .|++| ....|++||+ +.|+... ++
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 56889999999999999998887665555555555555667777799998 47766 6678999999 4444221 22
Q ss_pred -----eCCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CCcEEEEE
Q 013282 274 -----RFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWD 346 (446)
Q Consensus 274 -----~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~~v~iwd 346 (446)
...+-|.|++|+| +.+.+++|+....+-||.-..+.++..+.+|.+.|+.++|+++|+.|.+|+. +..|..||
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 2366789999999 6678999999999999998889999999999999999999999999999987 77899999
Q ss_pred ccCCCcceEEEecCCC-ceEEE--EEccCCCEEEEEeCCCeEEEEEcCC-CeeEeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 347 LRNLSESVAVLKGNLG-AIRSI--RYTSDGRYMATAEPADFVHVYDVKS-GYEKEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~-~v~~l--~~s~dg~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
+|....++..+..|.+ .-..| ...|+|++|++|+.+|.|++||+++ +..+..+..+...+++++++|--..+++++
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 9998888888887765 22334 4578999999999999999999998 666777778888999999999988888876
Q ss_pred ecC
Q 013282 423 WDR 425 (446)
Q Consensus 423 ~D~ 425 (446)
..+
T Consensus 360 Gqr 362 (406)
T KOG2919|consen 360 GQR 362 (406)
T ss_pred Cce
Confidence 543
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.4e-24 Score=204.87 Aligned_cols=214 Identities=21% Similarity=0.291 Sum_probs=189.1
Q ss_pred EeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEE
Q 013282 204 AGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHS 282 (446)
Q Consensus 204 tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~ 282 (446)
.+-..-.+++|+.... ..|...++++.+ -..+. .+++|+.|..+-+|.+.....+..+. |..+|.++
T Consensus 9 ~~~~~t~Lr~~~~~~~---------~~hsaav~~lk~--~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 9 KTKRATKLRVWDTREF---------VAHSAAVGCLKI--RKSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred eeeeeeccccccchhh---------hhhhhhhceeee--eccce-eeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 3334445667765332 256777888877 34444 79999999999999998777766666 99999999
Q ss_pred EECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCC
Q 013282 283 SQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 362 (446)
Q Consensus 283 ~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~ 362 (446)
.|++...+|++|+.+|+|++||+..++.+++|.+|...+.++.|+|-+.++|+|+.|+.+++||+|. ..+.+.+.+|..
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTR 155 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 678899999999
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 363 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 363 ~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.|..+.|+|+|+++++|+.|..++|||+..|+....+..|.+.+..+.|+|..-+|+.|+.|+++.-|
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW 223 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999998744
No 129
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=8.7e-21 Score=183.52 Aligned_cols=300 Identities=18% Similarity=0.149 Sum_probs=215.6
Q ss_pred ccceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccc
Q 013282 111 GASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 190 (446)
Q Consensus 111 ~~~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~ 190 (446)
+..+|.|++..--......|-.--+++..-+.+.+....++.+.+|...+......+.+. +++ ....
T Consensus 94 g~~i~~~~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~------------~~~-~~~~ 160 (910)
T KOG1539|consen 94 GNKIYAYARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQST------------FLK-VEGD 160 (910)
T ss_pred CcEEEEEEccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccce------------eee-ccCC
Confidence 444455544432222223333222333444556666666777888877663111011000 000 1111
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.|+++.. -=+.++.|+.+|.+.+|++++++.. .++.++...|+++.- +|-=. +++.|..+|+|.++++..+
T Consensus 161 ~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v---~~f~~~~s~IT~ieq--sPaLD-VVaiG~~~G~ViifNlK~d 234 (910)
T KOG1539|consen 161 FITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVV---YTFQEFFSRITAIEQ--SPALD-VVAIGLENGTVIIFNLKFD 234 (910)
T ss_pred ceeeEecchhheeeEEEeecCCcEEEEEeccCcEE---EEecccccceeEecc--CCcce-EEEEeccCceEEEEEcccC
Confidence 2666655 2367899999999999999998765 455566778888865 67655 7999999999999999999
Q ss_pred eeeEeeeCC-CCeeEEEECCCCCEE-EEEecCCcEEEEECCCCceEEEe-------------------------------
Q 013282 268 QLSKHFRFP-WPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASL------------------------------- 314 (446)
Q Consensus 268 ~~~~~~~~~-~~v~~~~~sp~~~~l-~~~~~d~~i~i~d~~~~~~~~~~------------------------------- 314 (446)
+.+.+|+++ ++|+.++|..||+-+ ++|+..|.+.+||+...+.+..+
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~ 314 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKV 314 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeE
Confidence 999999986 899999999999855 66667799999999765543322
Q ss_pred --------------------------------------------------------------------------------
Q 013282 315 -------------------------------------------------------------------------------- 314 (446)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (446)
T Consensus 315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k 394 (910)
T KOG1539|consen 315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLK 394 (910)
T ss_pred EEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhc
Confidence
Q ss_pred ---------------------------------------c-----CC------CCceeEEEECCCCCEEEEEeCCCcEEE
Q 013282 315 ---------------------------------------C-----GH------LDFSFASAWHPNGVTFATGNQDKTCRI 344 (446)
Q Consensus 315 ---------------------------------------~-----~~------~~~v~~~~~~p~~~~l~sgs~d~~v~i 344 (446)
. .+ ...+++++.++.|++.+.|+..|+|-+
T Consensus 395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence 0 01 145677888888888888888888999
Q ss_pred EEccCCCcceEEE---ecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee--------------------------
Q 013282 345 WDLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE-------------------------- 395 (446)
Q Consensus 345 wd~~~~~~~~~~~---~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~-------------------------- 395 (446)
|+++. +-....+ ..|.++|++++...-++.+++++.+|.+++||..+...
T Consensus 475 fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 475 FNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EEccc-CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 98865 5555566 57999999999999999999999999999999876431
Q ss_pred ---------------EeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 396 ---------------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 396 ---------------~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
++.+.+|...|+.++|||||++|++++.|++|+.|
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 23344788999999999999999999999998776
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.2e-21 Score=169.64 Aligned_cols=236 Identities=14% Similarity=0.103 Sum_probs=190.9
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|+++.| .++.|+++++||++++|++..... +....|.+++..++| .+.. .+++|+.||.|+.+|+.++.
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----~~~~~~~~plL~c~F--~d~~--~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----KLKFKHGAPLLDCAF--ADES--TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----hhheecCCceeeeec--cCCc--eEEEeccCceEEEEEecCCc
Confidence 6899988 567788888999999999987632 333457778888887 4433 59999999999999999999
Q ss_pred eeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 013282 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 269 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~ 348 (446)
......|..+|.|+..++-...+++|+.|++|++||.+....+..+.. ...|+++.. .|+.|+.|+.+..|.+||+|
T Consensus 87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcc
Confidence 888888999999999999888999999999999999998665555553 348888876 57799999999999999999
Q ss_pred CCCcceEEEe-cCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC----eeEeEeeccc---------cCeEEEEEcCC
Q 013282 349 NLSESVAVLK-GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFF---------GEISGISFSPD 414 (446)
Q Consensus 349 ~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~~~~spd 414 (446)
+...+.+.-. .-.-.+++|++-|++.=.++++-+|.|.+=.+... .....+..|. .+|++|+|+|-
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 8766553322 23457999999998888888999999887666554 3445555554 37999999999
Q ss_pred CCcEEEEEecCCcceEEEEeccc
Q 013282 415 TESLFIGVWDRTYGSLLEYGRCR 437 (446)
Q Consensus 415 g~~l~~~~~D~~~~~~l~~~~~~ 437 (446)
-..|++|+.||-+..|--+.|++
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred cceEEecCCCceEEEccCcchhh
Confidence 89999999999998887666554
No 131
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=5.4e-22 Score=171.10 Aligned_cols=200 Identities=22% Similarity=0.212 Sum_probs=159.2
Q ss_pred EeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-ceeeEe--eeCCCCeeEEEECCCCCEEEEEecCCcEEEE
Q 013282 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKH--FRFPWPVNHSSQSPDGKLLIIVGDNPDGLLV 303 (446)
Q Consensus 227 ~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 303 (446)
+.......|.++.| ||....+++++|+|++||+|+++. +..+.. ..+.++|.+++|+.+|..+++|+-|+.+++|
T Consensus 22 v~~pP~DsIS~l~F--SP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 22 VPNPPEDSISALAF--SPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred cCCCcccchheeEe--ccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 33445667888888 886666788999999999999976 454443 3389999999999999999999999999999
Q ss_pred ECCCCceEEEecCCCCceeEEEECCCCC--EEEEEeCCCcEEEEEccCCCcceEEEe-----------------------
Q 013282 304 DSMTGKTIASLCGHLDFSFASAWHPNGV--TFATGNQDKTCRIWDLRNLSESVAVLK----------------------- 358 (446)
Q Consensus 304 d~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~sgs~d~~v~iwd~~~~~~~~~~~~----------------------- 358 (446)
|+.+++ +..+..|.++|.++.|-+... .|+|||+|++|+.||+|. ..++.++.
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~ 177 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQLPERVYAADVLYPMAVVATAERH 177 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC-CCeeeeeeccceeeehhccCceeEEEecCCc
Confidence 999996 556677999999999988665 899999999999999986 33332221
Q ss_pred --------------cC----CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC--eeEeEeeccc---------cCeEEE
Q 013282 359 --------------GN----LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG--YEKEQEIDFF---------GEISGI 409 (446)
Q Consensus 359 --------------~~----~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---------~~v~~~ 409 (446)
.+ .-.++||+..++..-.|.|+-.|.+-|..+..+ +.-..+..|. ..|++|
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 00 124788888888887799999999999888776 4444555555 258899
Q ss_pred EEcCCCCcEEEEEecCCcceE
Q 013282 410 SFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 410 ~~spdg~~l~~~~~D~~~~~~ 430 (446)
+|+|.-..|++++.||+..-|
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFW 278 (347)
T ss_pred EeecccceEEEecCCceEEEe
Confidence 999998999999999987544
No 132
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.5e-23 Score=205.96 Aligned_cols=240 Identities=15% Similarity=0.183 Sum_probs=198.3
Q ss_pred eEEEEEe--CC----cEEEEeccCCcEEEEEcCC---CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEE
Q 013282 191 QVSTLAV--KD----KLLVAGGFQGELICKHLDR---PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (446)
Q Consensus 191 ~v~~l~~--~~----~~l~tg~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~i 261 (446)
+...|+| .+ .+||.|+.||.|.+|+... +...........|.+.|..++| ++...+++++|+++|.|.|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDf--N~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDF--NPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeec--cccCCceeeccCCCCcEEE
Confidence 5777888 22 3699999999999999876 2222234556789999999998 8988889999999999999
Q ss_pred EecCcceeeEee---eCCCCeeEEEECCC-CCEEEEEecCCcEEEEECCCCceEEEecCCCC--ceeEEEECCCC-CEEE
Q 013282 262 FDMGKYQLSKHF---RFPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD--FSFASAWHPNG-VTFA 334 (446)
Q Consensus 262 wd~~~~~~~~~~---~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~p~~-~~l~ 334 (446)
||+...+.-.++ .....|.+++|+.. ...|++++.+|.+.|||++..+++..+..+.+ .+..++|||+. ..|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875443333 25678999999874 44668888999999999998888888775544 57889999965 5666
Q ss_pred EEeCCC---cEEEEEccCCCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEE
Q 013282 335 TGNQDK---TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGIS 410 (446)
Q Consensus 335 sgs~d~---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 410 (446)
+++.|. .|.+||+|....+++++.+|..+|.++.|++.+ ++|++++.|+.|.+|+..+++.+..+......+..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 666643 699999999899999999999999999999977 8999999999999999999999999888778899999
Q ss_pred EcCCCC-cEEEEEecCCcceEEE
Q 013282 411 FSPDTE-SLFIGVWDRTYGSLLE 432 (446)
Q Consensus 411 ~spdg~-~l~~~~~D~~~~~~l~ 432 (446)
|+|... .+++++.||.|.+.-.
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred ecCCCcchhhhheeccceeeeee
Confidence 999766 7788899999886543
No 133
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.6e-21 Score=174.97 Aligned_cols=201 Identities=17% Similarity=0.166 Sum_probs=161.9
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 266 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~- 266 (446)
.|.+|++ ..+.||+||.|.+|++||+.+++. ..++.+|.+.|.++.| +|....+|++|+.|++|.+.|++.
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p---~~s~~~~~k~Vq~l~w--h~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP---KSSITHHGKKVQTLEW--HPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCc---ceehhhcCCceeEEEe--cCCCceEEEeccccceEEeeeccCc
Confidence 5677887 568999999999999999999854 4666789999999998 888888999999999999999984
Q ss_pred ceeeEeeeCCCCeeEEEECC-CCCEEEEEecCCcEEEEECCC-CceEEEecCCCCceeEEEECC-CCCEEEEEeCCCcEE
Q 013282 267 YQLSKHFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCR 343 (446)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~ 343 (446)
...-..++..+.|..++|.| ....++++++||+++-+|+|. ++++.+++.|.+.|.++++++ ...+++|++.|++|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 33344566788999999999 455778888999999999995 599999999999999999998 557899999999999
Q ss_pred EEEccCCCc-ceEEEecCCCceEEEEEccCCC-EEEEEeCCCeEEEEEcCCCeeE
Q 013282 344 IWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGYEK 396 (446)
Q Consensus 344 iwd~~~~~~-~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~iwd~~~~~~~ 396 (446)
+|++..... .+..-.-..+...|.++.|+-. +||.|+..+.++|||+.+...+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999954221 1111111234466777888764 6777888889999999876544
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=172.19 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=173.1
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCCC-------------eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPG-------------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~-------------~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d 256 (446)
+|....+ +..+.++-+..|.|.||++...- ......++.+|...-.+++| ||...-.|++|..-
T Consensus 156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW--Sp~~~g~LlsGDc~ 233 (440)
T KOG0302|consen 156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW--SPIKTGRLLSGDCV 233 (440)
T ss_pred eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec--ccccccccccCccc
Confidence 3444444 66777888899999999985211 01112345566666666766 77544458888888
Q ss_pred CcEEEEecCcceeeE----eeeCCCCeeEEEECCC-CCEEEEEecCCcEEEEECCCCc--eEEEecCCCCceeEEEECCC
Q 013282 257 CGVRDFDMGKYQLSK----HFRFPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGK--TIASLCGHLDFSFASAWHPN 329 (446)
Q Consensus 257 g~v~iwd~~~~~~~~----~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~p~ 329 (446)
+.|++|...++.-.. ...|...|..++|||. ...|++|+-||+|+|||+|++. .....+.|.+.|+.+.|+..
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRR 313 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCC
Confidence 999999988765432 2238899999999994 5578999999999999999872 22233789999999999998
Q ss_pred CCEEEEEeCCCcEEEEEccC--CCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCCe------------
Q 013282 330 GVTFATGNQDKTCRIWDLRN--LSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY------------ 394 (446)
Q Consensus 330 ~~~l~sgs~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~------------ 394 (446)
-.+||+|+.||+++|||+|. .++++..++-|..+|++|.|+|.. ..|++++.|.+|.|||+.-..
T Consensus 314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~ 393 (440)
T KOG0302|consen 314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG 393 (440)
T ss_pred cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc
Confidence 88999999999999999986 357899999999999999999964 577888899999999986321
Q ss_pred ----eEeEeeccc--cCeEEEEEcCCCC-cEEEEEecC
Q 013282 395 ----EKEQEIDFF--GEISGISFSPDTE-SLFIGVWDR 425 (446)
Q Consensus 395 ----~~~~~~~~~--~~v~~~~~spdg~-~l~~~~~D~ 425 (446)
+.+-+.-|. ..+..+.|++.-. +|++.+.||
T Consensus 394 L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 394 LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 111223343 3688899998654 455555554
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=7.4e-21 Score=180.89 Aligned_cols=236 Identities=15% Similarity=0.151 Sum_probs=184.0
Q ss_pred EEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEe----------CCCCCeEEEEEeCCCcE
Q 013282 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG----------SPSGAVHFTASNNDCGV 259 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~----------s~~~~~~l~s~s~dg~v 259 (446)
..++.| ....|.+--.|..|+|||++.....-....+-.|..-|+.+..+. -|.+ -|++++.|++|
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD~TI 404 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG--CFTTCSSDGTI 404 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc--ceeEecCCCcE
Confidence 445666 467888889999999999987664333333445666666555421 1333 49999999999
Q ss_pred EEEecCcceeeEe--------------------------------------eeCCCCeeEEEECCCCCEEEEEecCCcEE
Q 013282 260 RDFDMGKYQLSKH--------------------------------------FRFPWPVNHSSQSPDGKLLIIVGDNPDGL 301 (446)
Q Consensus 260 ~iwd~~~~~~~~~--------------------------------------~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 301 (446)
|+|++..+..-.. +.....+.+++++|+|++||+|..-|+++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 9999875211000 01122488999999999999999999999
Q ss_pred EEECCCCceEEEecCCCCceeEEEECC---CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEE---------
Q 013282 302 LVDSMTGKTIASLCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY--------- 369 (446)
Q Consensus 302 i~d~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--------- 369 (446)
+|++...+.+..+..|...|.|+.|+- ..++||+++.|..|+|||+...-.+++++.+|+..|++++|
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 999999999999999999999999986 45789999999999999996555666777777666666555
Q ss_pred ----------------------------------------ccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec---cccCe
Q 013282 370 ----------------------------------------TSDGRYMATAEPADFVHVYDVKSGYEKEQEID---FFGEI 406 (446)
Q Consensus 370 ----------------------------------------s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v 406 (446)
.|..+++++++.|..|+|||+.+|+..+.+.+ |.+..
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 34556688999999999999999998888875 66788
Q ss_pred EEEEEcCCCCcEEEEEecCCcce
Q 013282 407 SGISFSPDTESLFIGVWDRTYGS 429 (446)
Q Consensus 407 ~~~~~spdg~~l~~~~~D~~~~~ 429 (446)
..+...|.|-||++.+.|.++..
T Consensus 645 IKv~lDPSgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTLCF 667 (1080)
T ss_pred EEEEECCCccEEEEeecCCceEE
Confidence 89999999999999999988643
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.1e-21 Score=176.56 Aligned_cols=223 Identities=15% Similarity=0.196 Sum_probs=177.3
Q ss_pred cCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCC------CC
Q 013282 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDR------PG 220 (446)
Q Consensus 149 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~------~~ 220 (446)
-.++|++|...+|+...++ .+|.- .|+|+.| ||.+|+|||.||.|.+|.+.. ..
T Consensus 101 i~g~lYlWelssG~LL~v~--~aHYQ----------------~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVL--SAHYQ----------------SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred ccCcEEEEEeccccHHHHH--Hhhcc----------------ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC
Confidence 4678899999998654333 44433 5999999 999999999999999998742 11
Q ss_pred eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcE
Q 013282 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDG 300 (446)
Q Consensus 221 ~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 300 (446)
.......+.+|.-+|+.+.+-+.+... .++++|.|.++++||+..+.++.++..+.++.++++.|-+..+.+|+.+|.|
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~-rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSGGTNA-RLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKI 241 (476)
T ss_pred CccceeeeccCcceeEEEEecCCCccc-eEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceE
Confidence 223346678899999999985554444 6999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCC----------------ceEEEecCCCC--ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCC
Q 013282 301 LLVDSMTG----------------KTIASLCGHLD--FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 362 (446)
Q Consensus 301 ~i~d~~~~----------------~~~~~~~~~~~--~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~ 362 (446)
.+.++... ..+..+.||.+ .|+|++++-||.+|++|+.||.|+|||+.. .++++++....+
T Consensus 242 ~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 242 FQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSKG 320 (476)
T ss_pred EeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhcc
Confidence 99887432 23456778988 999999999999999999999999999965 788888876678
Q ss_pred ceEEEEEccCCCEEEEE-eCCCeEEEEEcC
Q 013282 363 AIRSIRYTSDGRYMATA-EPADFVHVYDVK 391 (446)
Q Consensus 363 ~v~~l~~s~dg~~l~~~-~~dg~i~iwd~~ 391 (446)
+|+.+.+.|--+-...+ ....++..|++.
T Consensus 321 pVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 321 PVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred ccceeEeeccccceecccccCccCCchHhh
Confidence 99999997754433332 223345555443
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=171.95 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=155.8
Q ss_pred EEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc-
Q 013282 192 VSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY- 267 (446)
Q Consensus 192 v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~- 267 (446)
=++|+| ....|++|..-+.|++|...++....-.+.+.+|...|..+++ ||....+|++||-||+|+|||++.+
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCC
Confidence 445666 4567899999999999999887655545566679999998887 9988889999999999999999887
Q ss_pred --eeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECC---CCceEEEecCCCCceeEEEECC-CCCEEEEEeCCCc
Q 013282 268 --QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM---TGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKT 341 (446)
Q Consensus 268 --~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~ 341 (446)
.++.+-.|...|+.+.|+..-.+||+|+++|+++|||++ .++++..++-|..+|+++.|+| +...|++++.|.+
T Consensus 292 ~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 292 KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence 444454489999999999988899999999999999998 5688999999999999999999 5578888899999
Q ss_pred EEEEEccCCCc---------------ceEEEecCC--CceEEEEEccCCC-EEEEEeCCCeEEEEE
Q 013282 342 CRIWDLRNLSE---------------SVAVLKGNL--GAIRSIRYTSDGR-YMATAEPADFVHVYD 389 (446)
Q Consensus 342 v~iwd~~~~~~---------------~~~~~~~~~--~~v~~l~~s~dg~-~l~~~~~dg~i~iwd 389 (446)
|.|||+.-... +.+-+.-|. ..+..+.|++.-. +|++.+.|| +.||-
T Consensus 372 itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 372 ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 99999842111 112233343 3577889998653 777777888 56664
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-21 Score=177.16 Aligned_cols=210 Identities=17% Similarity=0.210 Sum_probs=177.8
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCC-
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP- 276 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~- 276 (446)
...++++||..|.|+|||+... .+.+.+.+|...|+++.. +.... +|++++..|.|.|..+.++.....|.++
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~k---l~hr~lkdh~stvt~v~Y--N~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAK---LIHRFLKDHQSTVTYVDY--NNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred cceeeeccCcCceeeehhhHHH---HHhhhccCCcceeEEEEe--cCCcc-eeEEeccCCcEEEEecccCccccceecCC
Confidence 4489999999999999999744 556788899999999987 44444 7999999999999999999888888843
Q ss_pred -CCeeEEEECCCCC-EEEEEecCCcEEEEECCCCceEEEe-cCCCCceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCc
Q 013282 277 -WPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASL-CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE 352 (446)
Q Consensus 277 -~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~~~ 352 (446)
..|.-+.++|..+ +|.+++++|.|.+||+....++..+ +.|..+...++|+| +..+|++.+.|+.|.+||++. .+
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~ 242 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QA 242 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-cc
Confidence 4567999999766 4577899999999999877776654 57999999999999 678899999999999999975 55
Q ss_pred ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe-eEeEeeccccCeEEEEEcCCC
Q 013282 353 SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDT 415 (446)
Q Consensus 353 ~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~spdg 415 (446)
...++.. ..+.+.++|+++|.+|+.|+..|.|..||++..+ ++..+..|...|++++|-|.-
T Consensus 243 s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 243 STDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 5556554 5589999999999999999999999999999754 566667799999999998864
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=9.7e-20 Score=167.14 Aligned_cols=299 Identities=20% Similarity=0.199 Sum_probs=207.5
Q ss_pred eeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecC--C--CCCCCCCCCCCcc--------
Q 013282 117 FRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVS--G--HVAPSEKHPGSLL-------- 184 (446)
Q Consensus 117 f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~--g--~~~~~~~~~g~~~-------- 184 (446)
|..++..++|...||+--.+..+...+.--....-.+++|++.+-....++..- | +++-+..+.|+++
T Consensus 100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~ 179 (626)
T KOG2106|consen 100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNP 179 (626)
T ss_pred ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCc
Confidence 345677899999998643332221111000011345889997666544444421 1 1222333334332
Q ss_pred --------------ccC--ccceEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCC-CceeeEEEEeCC
Q 013282 185 --------------EGF--TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-AITNAVEIYGSP 244 (446)
Q Consensus 185 --------------~~~--~~~~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~~i~~~~s~ 244 (446)
.+. .+..|....| +.+++++.|. |.+..|++..+......-++..+. ..|.+++| .+
T Consensus 180 h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F--~e 256 (626)
T KOG2106|consen 180 HMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF--LE 256 (626)
T ss_pred cccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEE--cC
Confidence 111 1223444455 6777887775 779999998776544444443333 45556655 89
Q ss_pred CCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-----------eEE
Q 013282 245 SGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-----------TIA 312 (446)
Q Consensus 245 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-----------~~~ 312 (446)
+|. +++|..+|.|.||+..+.+..+... |++.|.+++.-.+|.+|- |+.|..|..||-.-.+ .++
T Consensus 257 ngd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iR 333 (626)
T KOG2106|consen 257 NGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIR 333 (626)
T ss_pred CCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCee
Confidence 986 8999999999999998877666554 999999999999988555 9999999999832110 011
Q ss_pred -----------------------------EecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCc
Q 013282 313 -----------------------------SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 363 (446)
Q Consensus 313 -----------------------------~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~ 363 (446)
...+|.+....++.+|+...++|+++|+.+++|+ . .++..+..- ..+
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~-~k~~wt~~~-~d~ 409 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D-HKLEWTKII-EDP 409 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C-CceeEEEEe-cCc
Confidence 1146777888899999999999999999999999 2 444444332 457
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 364 IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 364 v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
+.++.|+|.| .||.|+..|...+.|..+...+..-.. ..+++.+.|+|+|.+||+|+.|+.+
T Consensus 410 ~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred eeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeE
Confidence 8899999999 999999999999999998654444444 7899999999999999999999876
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=2.9e-21 Score=175.18 Aligned_cols=231 Identities=17% Similarity=0.172 Sum_probs=178.9
Q ss_pred eEEEEEe----CCcEEEEeccCCcEEEEEcCCCC-eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC
Q 013282 191 QVSTLAV----KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (446)
Q Consensus 191 ~v~~l~~----~~~~l~tg~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~ 265 (446)
+|++++| +.+++|+|..-|+|-+|++.+.+ .......+..|+++|+++.| +|.+...++++|.||+|+.-|++
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F--~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKF--SPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEe--cCCChhheeeeccCceeeeeeec
Confidence 7999999 44889999999999999995332 12224566789999999998 88887789999999999999998
Q ss_pred cceeeEeee---CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce-EEEecCCCCceeEEEECC-CCCEEEEEeCCC
Q 013282 266 KYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-IASLCGHLDFSFASAWHP-NGVTFATGNQDK 340 (446)
Q Consensus 266 ~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~ 340 (446)
+......+. ....+..+.|+.+...++++..=|...+||+++++. ...+.-|...|.+++++| ...+|||++.|+
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 765433333 233466777888777888888777999999997654 666777889999999999 667899999999
Q ss_pred cEEEEEccCCCc---ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcC---CCeeEeEeecccc------CeEE
Q 013282 341 TCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK---SGYEKEQEIDFFG------EISG 408 (446)
Q Consensus 341 ~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~------~v~~ 408 (446)
+++|||+|.... ++-....|...|.++.|||.|-.|++.+.|..|+|||.. ..-+....+.|.. ....
T Consensus 346 T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK 425 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK 425 (498)
T ss_pred ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh
Confidence 999999986432 233444689999999999998889999999999999984 2222222333332 2345
Q ss_pred EEEcCCCCcEEEEEe
Q 013282 409 ISFSPDTESLFIGVW 423 (446)
Q Consensus 409 ~~~spdg~~l~~~~~ 423 (446)
..|.|+..++++|-.
T Consensus 426 A~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 426 AAWDPDYNLIVVGRY 440 (498)
T ss_pred heeCCCccEEEEecc
Confidence 689999999988833
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.3e-21 Score=175.98 Aligned_cols=227 Identities=17% Similarity=0.224 Sum_probs=186.4
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|+++.| ....|++||.||++++|.++...... .....-...++....| .|+|...+++++....++.||+.+.+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-lqS~~l~~fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-LQSIHLEKFPIQKAEF--APNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChh-heeeeeccCccceeee--cCCCceEEEecccceEEEEeeccccc
Confidence 6999999 67899999999999999997654332 2233334556777777 89998779999999999999999877
Q ss_pred eeEeee----CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEE
Q 013282 269 LSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344 (446)
Q Consensus 269 ~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~i 344 (446)
....-. ....+....++|++++|+..|..|.|+|.-..+++.+..++ -.+.|..++|+.+++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 654433 22357788899999999999999999999999999999888 5788999999999999999999999999
Q ss_pred EEccCCCcceEEEecCCCc--eEEEEEccCCCEEEEEeCCCeEEEEEcCC------CeeEeEeeccccCeEEEEEcCCCC
Q 013282 345 WDLRNLSESVAVLKGNLGA--IRSIRYTSDGRYMATAEPADFVHVYDVKS------GYEKEQEIDFFGEISGISFSPDTE 416 (446)
Q Consensus 345 wd~~~~~~~~~~~~~~~~~--v~~l~~s~dg~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~spdg~ 416 (446)
||++. ..+++.+.. .+. -++++.+++|.+||+|+..|.|.|||..+ .+++..+......|+++.|+|+++
T Consensus 371 ~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 371 WNLRQ-NSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EecCC-cceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 99987 577887764 233 35677889999999999999999999654 345555666677899999999999
Q ss_pred cEEEEEe
Q 013282 417 SLFIGVW 423 (446)
Q Consensus 417 ~l~~~~~ 423 (446)
.|++++.
T Consensus 449 iLAiaS~ 455 (514)
T KOG2055|consen 449 ILAIASR 455 (514)
T ss_pred hhhhhhh
Confidence 9998864
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=8.1e-21 Score=164.72 Aligned_cols=238 Identities=18% Similarity=0.229 Sum_probs=183.0
Q ss_pred EEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee
Q 013282 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~ 269 (446)
..|+.| .|.+||+|+.||.|.+||+.+.+.. +++..|-.+|.+++| |++|. .|+++|.|..|.+||+..|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~W--S~dgr-~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCW--SRDGR-KLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEe--cCCCC-EeeeecCCceeEEEeccCCCc
Confidence 445555 8999999999999999999887643 677789999999987 99998 699999999999999999999
Q ss_pred eEeeeCCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceEEEecC-----CC-CceeEEEECCCCCEEEEEeCCCcE
Q 013282 270 SKHFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCG-----HL-DFSFASAWHPNGVTFATGNQDKTC 342 (446)
Q Consensus 270 ~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~-~~v~~~~~~p~~~~l~sgs~d~~v 342 (446)
++.+.++.+|..+.|+| +.+.+++.-.+..-.+.++..+ ++++-. .. ....+..|++.|+++++|...|.+
T Consensus 100 l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 100 LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence 99999999999999999 4445555444445566666542 222211 11 111233588999999999999999
Q ss_pred EEEEccCCCcceEEEecCC-CceEEEEEccCCCEEEEEeCCCeEEEEEcCCC----ee--E---eEeec--cccCeEEEE
Q 013282 343 RIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YE--K---EQEID--FFGEISGIS 410 (446)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~----~~--~---~~~~~--~~~~v~~~~ 410 (446)
.++|..+ .+++..++-.. ..|..+.++..|++|+..+.|..||.|+++.- +- + +.+.. ..-.-.+++
T Consensus 178 lv~~a~t-~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 178 LVYDAET-LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred EEEecch-heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 9999966 67787777655 78999999999999999999999999998631 11 1 11111 123456789
Q ss_pred EcCCCCcEEEE--------EecCCcceEEEEecccC
Q 013282 411 FSPDTESLFIG--------VWDRTYGSLLEYGRCRN 438 (446)
Q Consensus 411 ~spdg~~l~~~--------~~D~~~~~~l~~~~~~~ 438 (446)
||.+|.|++.+ .|..++|.|.....+..
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 99999999877 67777888877766655
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=6.5e-21 Score=163.88 Aligned_cols=200 Identities=13% Similarity=0.190 Sum_probs=165.6
Q ss_pred EeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce------------eeEee----eCCCCeeEEEECC-CCC
Q 013282 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ------------LSKHF----RFPWPVNHSSQSP-DGK 289 (446)
Q Consensus 227 ~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~------------~~~~~----~~~~~v~~~~~sp-~~~ 289 (446)
+...|.+.|+++.+ .+....++++|+.||.|.+||++... ++... .|...|..+.|-| |.-
T Consensus 38 ~~r~HgGsvNsL~i--d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQI--DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred eeccCCCccceeee--ccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 33467889999999 67666689999999999999997532 11111 1677899999999 777
Q ss_pred EEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC---CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEE
Q 013282 290 LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS 366 (446)
Q Consensus 290 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~ 366 (446)
.+.+++.|.++++||..+.+....|+ .++.|++-+|+| ...++|+|..+-.|++.|+.. +...+++.+|.+.|.+
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLA 193 (397)
T ss_pred eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEE
Confidence 88999999999999999999888887 678899999999 345788899999999999966 8999999999999999
Q ss_pred EEEccCCC-EEEEEeCCCeEEEEEcCCC-eeEe--------------EeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 367 IRYTSDGR-YMATAEPADFVHVYDVKSG-YEKE--------------QEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 367 l~~s~dg~-~l~~~~~dg~i~iwd~~~~-~~~~--------------~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+.|+|... .||+|+.||.|++||++.. -+.. .-..|.+.|++++|+.+|.+|++++.|..+..|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 99999886 4689999999999999854 1211 123577889999999999999999988887665
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.5e-18 Score=162.21 Aligned_cols=252 Identities=14% Similarity=0.118 Sum_probs=171.1
Q ss_pred eeEEecccCeEEEe--cCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEE-eccCCcE
Q 013282 135 NLVWATSKHDVYLM--SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVA-GGFQGEL 211 (446)
Q Consensus 135 ~l~~~~~~~~v~~~--~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~t-g~~dg~i 211 (446)
.+.+......+|.. .++.|.+|+..+++....+ ..+.. ....++..+++.+++ ++.++.|
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~---------------~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--PSGPD---------------PELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--cCCCC---------------ccEEEECCCCCEEEEEcCCCCeE
Confidence 34444444444432 3578899998776433222 11100 012233447776654 5668999
Q ss_pred EEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC-cEEEEecCcceeeEeeeCCCCeeEEEECCCCCE
Q 013282 212 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKL 290 (446)
Q Consensus 212 ~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~ 290 (446)
++|++.+.... ..... ...+..+.+ +|+|.. +++++.++ .+.+||..+++....+.....+.+++|+|++++
T Consensus 98 ~~~d~~~~~~~---~~~~~-~~~~~~~~~--~~dg~~-l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 170 (300)
T TIGR03866 98 TVIDIETRKVL---AEIPV-GVEPEGMAV--SPDGKI-VVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKE 170 (300)
T ss_pred EEEECCCCeEE---eEeeC-CCCcceEEE--CCCCCE-EEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCE
Confidence 99999775432 22221 223455555 999984 66665554 577889988887766655556788999999998
Q ss_pred EEEEe-cCCcEEEEECCCCceEEEecCCC-----C--ceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCcceEEEecCC
Q 013282 291 LIIVG-DNPDGLLVDSMTGKTIASLCGHL-----D--FSFASAWHPNGVTFATG-NQDKTCRIWDLRNLSESVAVLKGNL 361 (446)
Q Consensus 291 l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-----~--~v~~~~~~p~~~~l~sg-s~d~~v~iwd~~~~~~~~~~~~~~~ 361 (446)
|++++ .++.|++||+.+++.+..+..+. . ....++|+|++++++++ +.++.+.+||+++ .+.+..+. +.
T Consensus 171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~-~~~~~~~~-~~ 248 (300)
T TIGR03866 171 LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT-YEVLDYLL-VG 248 (300)
T ss_pred EEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEEE-eC
Confidence 86554 58999999999998877664221 1 23468899999986554 4567899999965 55555443 34
Q ss_pred CceEEEEEccCCCEEEEEe-CCCeEEEEEcCCCeeEeEeeccccCeEEEEEcC
Q 013282 362 GAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 413 (446)
Q Consensus 362 ~~v~~l~~s~dg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 413 (446)
..+.+++|+|+|++|++++ .++.|++||+.+++.+..+.. ...+.+++|+|
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 5788999999999998864 589999999999988887764 45668888876
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.4e-19 Score=169.12 Aligned_cols=284 Identities=12% Similarity=0.144 Sum_probs=217.8
Q ss_pred cccceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCcc
Q 013282 110 KGASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQ 189 (446)
Q Consensus 110 ~~~~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~ 189 (446)
...+||+|+.. .+.+.++..+.+.|..+. .+++|-+|+..++-. ....+.|+ ..
T Consensus 16 hrcrf~d~~Ps--~I~slA~s~kS~~lAvsR--------t~g~IEiwN~~~~w~-~~~vi~g~---------------~d 69 (691)
T KOG2048|consen 16 HRCRFVDYKPS--EIVSLAYSHKSNQLAVSR--------TDGNIEIWNLSNNWF-LEPVIHGP---------------ED 69 (691)
T ss_pred EEEEEEeeecc--ceEEEEEeccCCceeeec--------cCCcEEEEccCCCce-eeEEEecC---------------CC
Confidence 45577877754 677777666655544332 356789999876422 22233333 22
Q ss_pred ceEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 190 TQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 190 ~~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
..|.+++| ++..|.+.+.+|+|.-||+.+.... .......+.+.++++ +|.+. .++.|+.||.+..++...++
T Consensus 70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~---~~~d~~gg~IWsiai--~p~~~-~l~IgcddGvl~~~s~~p~~ 143 (691)
T KOG2048|consen 70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK---YNIDSNGGAIWSIAI--NPENT-ILAIGCDDGVLYDFSIGPDK 143 (691)
T ss_pred CceeeEEEccCCeEEeecCCceEEEEecccCcee---EEecCCCcceeEEEe--CCccc-eEEeecCCceEEEEecCCce
Confidence 36999999 7999999999999999999887654 333455678999998 88887 68889999988888888777
Q ss_pred eeEeee---CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEec--------CCCCceeEEEECCCCCEEEEEe
Q 013282 269 LSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--------GHLDFSFASAWHPNGVTFATGN 337 (446)
Q Consensus 269 ~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~l~sgs 337 (446)
...... ..+.|.++.|+|++..+++|+.||.|++||..+++.++... +...-|.++.|-.+ ..|++|.
T Consensus 144 I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgD 222 (691)
T KOG2048|consen 144 ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGD 222 (691)
T ss_pred EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEec
Confidence 654433 56789999999999999999999999999999998877321 12234566666644 4799999
Q ss_pred CCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee----EeEeeccccCeEEEEEcC
Q 013282 338 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE----KEQEIDFFGEISGISFSP 413 (446)
Q Consensus 338 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp 413 (446)
.-|+|.+||... +..++.+..|.+.|.+++..+++.++++++.|+.|..|-..+... ......|...|.+++..+
T Consensus 223 S~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 223 SAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred CCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999999999966 889999999999999999999999999999999998888776532 222334777899999987
Q ss_pred CCCcEEEEEecCCcce
Q 013282 414 DTESLFIGVWDRTYGS 429 (446)
Q Consensus 414 dg~~l~~~~~D~~~~~ 429 (446)
+ .|++|+.|.++-.
T Consensus 302 ~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 302 N--ALISGGRDFTLAI 315 (691)
T ss_pred c--eEEecceeeEEEE
Confidence 6 8889988877543
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=8.9e-20 Score=159.19 Aligned_cols=227 Identities=18% Similarity=0.183 Sum_probs=178.7
Q ss_pred CcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee----
Q 013282 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---- 274 (446)
Q Consensus 199 ~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---- 274 (446)
.-+||+||.-|.|+|.|+.... +.....+|...|+.+.+ .|....+++++|.|.+||+|++++..++..|.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~---~~~~~~ghG~sINeik~--~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQ---CSKNYRGHGGSINEIKF--HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred CeeEEeecceeEEEEEecchhh---hccceeccCccchhhhc--CCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 5689999999999999998774 44667789999999999 89988899999999999999999999999887
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEE----------------------------EecCCCCceeEEEE
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA----------------------------SLCGHLDFSFASAW 326 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~----------------------------~~~~~~~~v~~~~~ 326 (446)
|...|.++.|+++|.+++++|.|.+|.+|++...+... +-.-|..+|-|+.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 88899999999999999999999999999997432110 01236667777777
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCcc-------------eEEEecCCCceEEEE--EccCCCEEEEEeCCCeEEEEEcC
Q 013282 327 HPNGVTFATGNQDKTCRIWDLRNLSES-------------VAVLKGNLGAIRSIR--YTSDGRYMATAEPADFVHVYDVK 391 (446)
Q Consensus 327 ~p~~~~l~sgs~d~~v~iwd~~~~~~~-------------~~~~~~~~~~v~~l~--~s~dg~~l~~~~~dg~i~iwd~~ 391 (446)
- |.++++-|-++.|..|-.....+. +..+.-....|.-+. |.|-++.||.|...|.|.+||++
T Consensus 260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD 337 (385)
T ss_pred H--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence 4 678999999999999987222222 223333344555554 56678899999999999999999
Q ss_pred CCeeEe-Eeecc---ccCeEEEEEcCCCCcEEEEEecCCcceEEE
Q 013282 392 SGYEKE-QEIDF---FGEISGISFSPDTESLFIGVWDRTYGSLLE 432 (446)
Q Consensus 392 ~~~~~~-~~~~~---~~~v~~~~~spdg~~l~~~~~D~~~~~~l~ 432 (446)
...+.. ....| ...|...+|+.||..|+....|+++-.|-.
T Consensus 338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 865532 11122 246899999999999999999998876643
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.5e-19 Score=167.58 Aligned_cols=302 Identities=15% Similarity=0.097 Sum_probs=220.9
Q ss_pred ccceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccc
Q 013282 111 GASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 190 (446)
Q Consensus 111 ~~~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~ 190 (446)
....+-|++|++.|+++..++....|+. ...+|++++|-+.++++...+.+.+.+....+.++ ...
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlas--------GsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~------~~~ 455 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLAS--------GSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPL------SDL 455 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeee--------cCCCCcEEEEEeecceEEEEEeecceeEEEEecCC------CCc
Confidence 3456778999999999988885444433 33467889999999988877777765332222221 222
Q ss_pred eEEEEEeCCcEEEE-------------------e----ccCCcEEEEEcCCCCeee-EEEEeecCCCceeeEEEEeCCCC
Q 013282 191 QVSTLAVKDKLLVA-------------------G----GFQGELICKHLDRPGVSF-CSRTTYDDNAITNAVEIYGSPSG 246 (446)
Q Consensus 191 ~v~~l~~~~~~l~t-------------------g----~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~v~~i~~~~s~~~ 246 (446)
+|.+++....+|++ + ..++.+..|.-....... ...+.-.|...|+.+.+ +..|
T Consensus 456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW--HrkG 533 (733)
T KOG0650|consen 456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW--HRKG 533 (733)
T ss_pred eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee--ecCC
Confidence 44444443333322 1 123445556433111100 01222345666777777 8899
Q ss_pred CeEEEEEeC---CCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCcee
Q 013282 247 AVHFTASNN---DCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF 322 (446)
Q Consensus 247 ~~~l~s~s~---dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 322 (446)
.. |++... ...|.|.++...+...-|. ..+.|.++.|+|...+|++++.. .|+|||+..+..+..+......|.
T Consensus 534 DY-latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS 611 (733)
T KOG0650|consen 534 DY-LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWIS 611 (733)
T ss_pred ce-EEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeee
Confidence 84 555533 3568899998777666665 67889999999999999888765 799999998888888887788999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcC------CC---
Q 013282 323 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK------SG--- 393 (446)
Q Consensus 323 ~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~------~~--- 393 (446)
+++.||.|..|+.|+.|+.+..+|+....++.+++.-|..++++++|++.-.++++|+.||.+.||.-. ..
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli 691 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI 691 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence 999999999999999999999999987778999999999999999999999999999999999998522 11
Q ss_pred eeEeEeeccccC----eEEEEEcCCCCcEEEEEecCCcceE
Q 013282 394 YEKEQEIDFFGE----ISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 394 ~~~~~~~~~~~~----v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.++..+.+|... |..+.|+|...+|++++.|++++-+
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 245566677644 8889999999999999999988643
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1e-18 Score=151.36 Aligned_cols=244 Identities=17% Similarity=0.240 Sum_probs=170.4
Q ss_pred ccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe----CC
Q 013282 124 VKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KD 199 (446)
Q Consensus 124 v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~----~~ 199 (446)
+.+..+.|..|.++ ..++|.++.+|+..+.. .....+.++. .|.| .|..+.| -|
T Consensus 16 ihdVs~D~~GRRmA--------tCSsDq~vkI~d~~~~s--~~W~~Ts~Wr---ah~~---------Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMA--------TCSSDQTVKIWDSTSDS--GTWSCTSSWR---AHDG---------SIWRVVWAHPEFG 73 (361)
T ss_pred eeeeeecccCceee--------eccCCCcEEEEeccCCC--CceEEeeeEE---ecCC---------cEEEEEecCcccc
Confidence 44444444444444 44556678999964442 2222222221 1223 5777777 68
Q ss_pred cEEEEeccCCcEEEEEcCC-----CC-eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc------c
Q 013282 200 KLLVAGGFQGELICKHLDR-----PG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK------Y 267 (446)
Q Consensus 200 ~~l~tg~~dg~i~vw~~~~-----~~-~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~------~ 267 (446)
+.+|+++.|+++.||.-.. .+ .-....++....+.|..+.|....-|- .+++++.||.||||+... .
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL-klA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL-KLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce-EEEEeccCcEEEEEecCCccccccc
Confidence 9999999999999997521 11 111234556677788888885444554 689999999999997643 2
Q ss_pred eeeEeee--------CCCCeeEEEECC---CCCEEEEEecC-----CcEEEEECCCC----ceEEEecCCCCceeEEEEC
Q 013282 268 QLSKHFR--------FPWPVNHSSQSP---DGKLLIIVGDN-----PDGLLVDSMTG----KTIASLCGHLDFSFASAWH 327 (446)
Q Consensus 268 ~~~~~~~--------~~~~v~~~~~sp---~~~~l~~~~~d-----~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~ 327 (446)
.+...++ +..+..|+.|+| ...+||+|+.+ +.++||....+ ..+.++.+|.++|+.++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 3333333 556788999998 34578888765 47888876432 3456677999999999999
Q ss_pred CC----CCEEEEEeCCCcEEEEEccCCC-------------------cceEEEecCCCceEEEEEccCCCEEEEEeCCCe
Q 013282 328 PN----GVTFATGNQDKTCRIWDLRNLS-------------------ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 384 (446)
Q Consensus 328 p~----~~~l~sgs~d~~v~iwd~~~~~-------------------~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~ 384 (446)
|+ -.+||+++.|| |+||.++... ..+..+..|.+.|..+.|+-.|..|++.+.||.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~ 311 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC 311 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence 94 36899999999 9999986311 123456689999999999999999999999999
Q ss_pred EEEEEcC
Q 013282 385 VHVYDVK 391 (446)
Q Consensus 385 i~iwd~~ 391 (446)
|++|...
T Consensus 312 VRLWkan 318 (361)
T KOG2445|consen 312 VRLWKAN 318 (361)
T ss_pred eeehhhh
Confidence 9999643
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.1e-19 Score=154.46 Aligned_cols=193 Identities=16% Similarity=0.231 Sum_probs=146.9
Q ss_pred EEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee-----E-eee-------------------------
Q 013282 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-----K-HFR------------------------- 274 (446)
Q Consensus 226 ~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~-----~-~~~------------------------- 274 (446)
..+.+|...|++++| +.+|+ .|++++.|++|++|++...... + ...
T Consensus 80 ~~LKgH~~~vt~~~F--sSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAF--SSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEE--cCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 445689999999998 89998 5999999999999998753211 0 000
Q ss_pred -----------------------------CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEE
Q 013282 275 -----------------------------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 325 (446)
Q Consensus 275 -----------------------------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 325 (446)
|...+..+-+...+++|++++.|..|.||+++ |+.+..+......-+..+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 11112223333346789999999999999999 999988887777778889
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCC--C-----cceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee---
Q 013282 326 WHPNGVTFATGNQDKTCRIWDLRNL--S-----ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE--- 395 (446)
Q Consensus 326 ~~p~~~~l~sgs~d~~v~iwd~~~~--~-----~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~--- 395 (446)
.+|+|+++|+++...-|++|.+--. + ..+..+++|..+|..++|+|+.+.+++.+.||+++|||+.-.+.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 9999999999999999999997321 1 24557889999999999999999999999999999999763221
Q ss_pred ----EeEe----eccccCeEEEEEcCCCCcEEEEE
Q 013282 396 ----KEQE----IDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 396 ----~~~~----~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
+... ....+....++.+|.|+.|+++.
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec
Confidence 1111 11234556899999999998764
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=6e-19 Score=158.10 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=127.1
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCC------eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEE
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPG------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD 261 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~i 261 (446)
+|.++.+ ..+.|+|||.|..|++|.+.... .......+..|...|+++.| +|+|. ++++|+.+|.|.+
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf--~p~ge-lLASg~D~g~v~l 91 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF--SPDGE-LLASGGDGGEVFL 91 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE--cCCcC-eeeecCCCceEEE
Confidence 6888888 34489999999999999886543 22234556788899999998 99998 7999999999999
Q ss_pred EecC--------c--------ceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEE
Q 013282 262 FDMG--------K--------YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 324 (446)
Q Consensus 262 wd~~--------~--------~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 324 (446)
|-.. + ....+.+. |...|..++|+|++.++++++.|..+++||+..|+.+..+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9765 2 12223333 77889999999999999999999999999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEc
Q 013282 325 AWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 325 ~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
+|.|-++++++-+.|...+.+.+
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred ecchhhhhhhhhccCcccceeee
Confidence 99998888888887776665554
No 151
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=2.6e-19 Score=151.89 Aligned_cols=253 Identities=17% Similarity=0.166 Sum_probs=180.3
Q ss_pred ccceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccc
Q 013282 111 GASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT 190 (446)
Q Consensus 111 ~~~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~ 190 (446)
..+||..|.+...+++..+.-+-| |+.+.. .|.++.|...+.+....+.+.|. .
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~--------~G~V~~w~lqt~r~~~~~r~~g~-----------------~ 57 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLS--------VGIVKMWVLQTERDLPLIRLFGR-----------------L 57 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccc--------cceEEEEEeecCccchhhhhhcc-----------------c
Confidence 458899998888888777666555 333333 35568899988876666554332 2
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCCCe-----------eeEEEEee-----------------------------
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGV-----------SFCSRTTY----------------------------- 229 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~-----------~~~~~~~~----------------------------- 229 (446)
.|+.+.. .+..|.+-+.|+.+.+|++..... .+|...+.
T Consensus 58 ~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 58 FITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred eeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 4666666 567888888899999998764221 11110000
Q ss_pred ----------cCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEe----------ee-CCCCeeEEEECCCC
Q 013282 230 ----------DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH----------FR-FPWPVNHSSQSPDG 288 (446)
Q Consensus 230 ----------~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~----------~~-~~~~v~~~~~sp~~ 288 (446)
...+.+.+..+-+......++++|..+|.|.+||+.++..+.. .. |..+|.++.+.+.-
T Consensus 138 qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 138 QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 0112233333221222334677889999999999988733322 22 77889999998866
Q ss_pred CEEEEEecCCcEEEEECC--CCceEE--EecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCce
Q 013282 289 KLLIIVGDNPDGLLVDSM--TGKTIA--SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAI 364 (446)
Q Consensus 289 ~~l~~~~~d~~i~i~d~~--~~~~~~--~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v 364 (446)
..=++|+.+..+..|.+. ++.+.. .++-....|..+.+-||++.+||+++|+.||||..++ ..++..++-|.+.|
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv 296 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV 296 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcce
Confidence 666788888889899886 343221 1222345678899999999999999999999999987 88999999999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEc
Q 013282 365 RSIRYTSDGRYMATAEPADFVHVYDV 390 (446)
Q Consensus 365 ~~l~~s~dg~~l~~~~~dg~i~iwd~ 390 (446)
++++|+|+...+|+|+.|+.|.+|++
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999986
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=1.1e-18 Score=165.86 Aligned_cols=307 Identities=14% Similarity=0.165 Sum_probs=210.9
Q ss_pred cceeeeeeccccccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccce
Q 013282 112 ASYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQ 191 (446)
Q Consensus 112 ~~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~ 191 (446)
..++..++|...|+|...-+... .....|....|+.+++|...-.....+..+.|| .
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~-----~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~------------------~ 101 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSE-----IVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH------------------C 101 (764)
T ss_pred eeEEeccCCccceEEEEEccccc-----ccceEEEccCCCcEEEEEEeehheEEEEeecCc------------------c
Confidence 35667777877777764443322 111556667788899999875555666666653 2
Q ss_pred EEEEEeCC--cEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCC--ceeeEEEEeCC-CCCeEEEEEeCCCcEEEEecCc
Q 013282 192 VSTLAVKD--KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA--ITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 192 v~~l~~~~--~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~--~v~~i~~~~s~-~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
+.++++.. ....+...++.+.+|+....+. .+...+.-..+ ...++++ .+ .+..+++.|+.+..|.++.-..
T Consensus 102 ~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~--~~~~~~~lla~Ggs~~~v~~~s~~~ 178 (764)
T KOG1063|consen 102 KECVCVVARSSVMTCKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAA--LKNNKTFLLACGGSKFVVDLYSSSA 178 (764)
T ss_pred eeEEEEEeeeeEEEeeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhh--hccCCcEEEEecCcceEEEEeccCC
Confidence 44455522 2222236899999999955442 22222222222 2334444 45 4555667777788888886553
Q ss_pred --ceeeEeee-CCCCeeEEEECCCCC---EEEEEecCCcEEEEECCCCc---------------------eE--------
Q 013282 267 --YQLSKHFR-FPWPVNHSSQSPDGK---LLIIVGDNPDGLLVDSMTGK---------------------TI-------- 311 (446)
Q Consensus 267 --~~~~~~~~-~~~~v~~~~~sp~~~---~l~~~~~d~~i~i~d~~~~~---------------------~~-------- 311 (446)
.+.+..+. |...|.+++|...+. +|+++++|..|+||.+.-+. ..
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 34445555 999999999987443 77899999999999875222 11
Q ss_pred --EEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCc------ceEEEecCCCceEEEEEccCCCEEEEEeCCC
Q 013282 312 --ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE------SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD 383 (446)
Q Consensus 312 --~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~------~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg 383 (446)
..+.||.++|+++.|+|.+..|+++|.|+++.+|-...... .+..+.+..+......|+|++..+++-+..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 11248999999999999999999999999999998854211 1122234455688899999999999999999
Q ss_pred eEEEEEcCCC---eeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE---------EEEecccCcee-ccc
Q 013282 384 FVHVYDVKSG---YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL---------LEYGRCRNYSY-LDS 444 (446)
Q Consensus 384 ~i~iwd~~~~---~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~---------l~~~~~~~~~~-l~~ 444 (446)
..++|-.+.. .....+.+|.+.|.+++|+|.|++|++++.|.+.+.+ .++.|++..+| |.|
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c 412 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTC 412 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccccee
Confidence 9999983332 2344566899999999999999999999999988754 55566666666 444
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.9e-19 Score=162.86 Aligned_cols=203 Identities=16% Similarity=0.168 Sum_probs=166.4
Q ss_pred ecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEE
Q 013282 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCS 225 (446)
Q Consensus 148 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~ 225 (446)
...+.+.+||.... ...-.+++|. ..|+++.+ ...+||+++..|.|.|..+.++... .
T Consensus 98 G~~~~Vkiwdl~~k--l~hr~lkdh~----------------stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t 157 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAK--LIHRFLKDHQ----------------STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--T 157 (673)
T ss_pred CcCceeeehhhHHH--HHhhhccCCc----------------ceeEEEEecCCcceeEEeccCCcEEEEecccCccc--c
Confidence 34566899998633 2223344443 26999988 7899999999999999998776533 2
Q ss_pred EEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee--CCCCeeEEEECC-CCCEEEEEecCCcEEE
Q 013282 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSP-DGKLLIIVGDNPDGLL 302 (446)
Q Consensus 226 ~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp-~~~~l~~~~~d~~i~i 302 (446)
.+..+....|..+.+ +|..+.+|.+++.+|.|.+||+....++..+. |..|...++|+| +..+|++.+.|..|.+
T Consensus 158 ~f~~~sgqsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred ceecCCCCeEEEeec--ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 222233445567777 89988899999999999999999888887776 999999999999 5567788999999999
Q ss_pred EECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCC
Q 013282 303 VDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG 373 (446)
Q Consensus 303 ~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg 373 (446)
||+++.+....+. ...+..+++|.|+|.+|++|+..|.|..||+|....++.++..|...|++|+|-|.-
T Consensus 236 yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 236 YDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999887777665 456889999999999999999999999999999899999999999999999998764
No 154
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.1e-18 Score=155.95 Aligned_cols=231 Identities=17% Similarity=0.205 Sum_probs=171.4
Q ss_pred CcEEEEEcCCCC-eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc-------eeeEeee-CCCCe
Q 013282 209 GELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY-------QLSKHFR-FPWPV 279 (446)
Q Consensus 209 g~i~vw~~~~~~-~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~-------~~~~~~~-~~~~v 279 (446)
|...|.-+...+ ......+..+|.+.|-.++| +|.+...|++||.|.+|.||.+..+ +++..+. |...|
T Consensus 57 gaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w--~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV 134 (472)
T KOG0303|consen 57 GAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDW--CPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV 134 (472)
T ss_pred cceeecccccccccCCCCCCccCcccccccccc--CccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE
Confidence 344444444333 12223455688888877776 8888889999999999999998653 2344444 88899
Q ss_pred eEEEECC-CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEe
Q 013282 280 NHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK 358 (446)
Q Consensus 280 ~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~ 358 (446)
..++|+| -.+.|++++.|.+|.+|++.+|..+.++. |.+.|++++|+-+|.+|+|.+.|+.|||||.|. ++.+..-.
T Consensus 135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~-~~~v~e~~ 212 (472)
T KOG0303|consen 135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR-GTVVSEGV 212 (472)
T ss_pred EEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC-CcEeeecc
Confidence 9999999 45678999999999999999999999988 999999999999999999999999999999987 78887777
Q ss_pred cCCCc-eEEEEEccCCCEEEEEe---CCCeEEEEEcCCCeeEe--EeeccccCeEEEEEcCCCCcEEEEE-ecCCcceEE
Q 013282 359 GNLGA-IRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKE--QEIDFFGEISGISFSPDTESLFIGV-WDRTYGSLL 431 (446)
Q Consensus 359 ~~~~~-v~~l~~s~dg~~l~~~~---~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~-~D~~~~~~l 431 (446)
+|.+. -..+.|-.+|.++.+|- .+.++-+||..+..... +.......|.=.-|.||...++.++ .|+.|+-+-
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 88763 34566888888554443 46789999977654332 2233445666677899999887665 566665443
Q ss_pred EEecccCceecc
Q 013282 432 EYGRCRNYSYLD 443 (446)
Q Consensus 432 ~~~~~~~~~~l~ 443 (446)
-........||+
T Consensus 293 it~d~P~~hyln 304 (472)
T KOG0303|consen 293 ITNEPPFVHYLN 304 (472)
T ss_pred ecCCCceeEEec
Confidence 333343445554
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.1e-20 Score=183.79 Aligned_cols=244 Identities=16% Similarity=0.239 Sum_probs=186.8
Q ss_pred ceeeeEEeccc-C----eEEEecCCeEEEEecCCC---CceEEEecCCCCCCCCCCCCCccccCccceEEEEEe---CCc
Q 013282 132 QLRNLVWATSK-H----DVYLMSHFSVIHWSSLTS---SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDK 200 (446)
Q Consensus 132 ~~~~l~~~~~~-~----~v~~~~~~~i~~w~~~~~---~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~---~~~ 200 (446)
....|.|+... + .+-...||+|.+|+...- ....+ +....+|.| .|..+.| .++
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~------la~~~~h~G---------~V~gLDfN~~q~n 130 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV------LATKSKHTG---------PVLGLDFNPFQGN 130 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH------HhhhcccCC---------ceeeeeccccCCc
Confidence 34567777422 2 222355899999997552 11111 223345666 7889998 678
Q ss_pred EEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCC---C
Q 013282 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP---W 277 (446)
Q Consensus 201 ~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~ 277 (446)
+||+|+.+|.|.|||+.+....+... .......|.++.| +..-..+|++++.+|.+.|||++..+.+..+... .
T Consensus 131 lLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 131 LLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred eeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEecc--chhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 99999999999999998865443221 2223445677766 7766778999999999999999998888777732 2
Q ss_pred CeeEEEECCCCC-EEEEEecC---CcEEEEECC-CCceEEEecCCCCceeEEEECCC-CCEEEEEeCCCcEEEEEccCCC
Q 013282 278 PVNHSSQSPDGK-LLIIVGDN---PDGLLVDSM-TGKTIASLCGHLDFSFASAWHPN-GVTFATGNQDKTCRIWDLRNLS 351 (446)
Q Consensus 278 ~v~~~~~sp~~~-~l~~~~~d---~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~d~~v~iwd~~~~~ 351 (446)
.+..++|+|+.. .++++++| ..|.+||+| ...+++.+++|...|.++.|++. ..+|++++.|+.|.+|+..+ +
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-g 286 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-G 286 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC-c
Confidence 378999999654 56666653 468999998 55678889999999999999994 48999999999999999965 8
Q ss_pred cceEEEecCCCceEEEEEccCCC-EEEEEeCCCeEEEEEcCCCe
Q 013282 352 ESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGY 394 (446)
Q Consensus 352 ~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~iwd~~~~~ 394 (446)
+.+..+.....++..+.|+|... .+++++.+|.|-||.+.++.
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 89999988888999999999775 88899999999999987653
No 156
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.4e-19 Score=155.17 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=146.9
Q ss_pred cEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee---C-
Q 013282 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---F- 275 (446)
Q Consensus 200 ~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~- 275 (446)
..+|++..+|+|++|+..+.+.. ..+.++...++.+.|.- .++...+.+|+.||+|++||++.......+. +
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---~~fk~~~~~~N~vrf~~-~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---EEFKGPPATTNGVRFIS-CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---heecCCCCcccceEEec-CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 67899999999999999886543 45567777788888853 3344579999999999999998766554444 3
Q ss_pred CCCeeEEEECCCCCEEEEEe----cCCcEEEEECCCCce-EEEe-cCCCCceeEEEECC-CCCEEEEEeCCCcEEEEEcc
Q 013282 276 PWPVNHSSQSPDGKLLIIVG----DNPDGLLVDSMTGKT-IASL-CGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 276 ~~~v~~~~~sp~~~~l~~~~----~d~~i~i~d~~~~~~-~~~~-~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~ 348 (446)
+.+..|++....++.+++|+ .+..|.+||+|..+. +..+ ..|.+.|++++|+| +.++|++||.||.|.|+|+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 35778888877888888886 367899999997665 5554 47999999999999 77899999999999999996
Q ss_pred CCCc--ceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCC
Q 013282 349 NLSE--SVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 349 ~~~~--~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~ 393 (446)
.... .+.....|...|.++.|..++ +.|.+-+......+|++..+
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 5322 222223456678999998887 45777788888999987654
No 157
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=3e-17 Score=145.75 Aligned_cols=226 Identities=17% Similarity=0.133 Sum_probs=174.4
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC--CcEEEEecCc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGK 266 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d--g~v~iwd~~~ 266 (446)
.+..+.| +...|..|+.+| .++|+.+.... ........+..+.+.|+.+ +++..+.+ +.+++.++..
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-----~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-----CFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHH-----hhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEccc
Confidence 4556667 667888889888 57888765443 2222233455566655543 44444444 3499999999
Q ss_pred ceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecC---CCCceeEEEECCCCCEEEEEe--CCCc
Q 013282 267 YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG---HLDFSFASAWHPNGVTFATGN--QDKT 341 (446)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~sgs--~d~~ 341 (446)
...+-.+.++.+|.++.++. +.|+++-.. .|+|||+++.++++++.. +...+.++++++.+.++|.-+ ..|.
T Consensus 78 ~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 78 KTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred CceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 99888999999999999974 556666554 499999999999988764 445566666666777888654 3688
Q ss_pred EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCe-EEEEEcCCCeeEeEeeccc--cCeEEEEEcCCCCcE
Q 013282 342 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEIDFF--GEISGISFSPDTESL 418 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~--~~v~~~~~spdg~~l 418 (446)
|.|||+.+ -+++..+.+|.+++.+++|+++|.+||+|+..|+ ||||.+.+|..+.++.... ..|.+++|+|++++|
T Consensus 155 V~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 155 VVLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 99999966 7889999999999999999999999999999996 8999999999998887533 468899999999999
Q ss_pred EEEEecCCcce
Q 013282 419 FIGVWDRTYGS 429 (446)
Q Consensus 419 ~~~~~D~~~~~ 429 (446)
++.+..+++-.
T Consensus 234 ~~sS~TeTVHi 244 (391)
T KOG2110|consen 234 AASSNTETVHI 244 (391)
T ss_pred EEecCCCeEEE
Confidence 98887777643
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=7.9e-18 Score=153.07 Aligned_cols=277 Identities=16% Similarity=0.138 Sum_probs=193.7
Q ss_pred eeccccccceeecccee-eeEEecccCeEEEecCCeEEEEecCCCCc--eEEEecCCCCCCCCCCCCCccccCccceEEE
Q 013282 118 RRNSRSVKSTILHFQLR-NLVWATSKHDVYLMSHFSVIHWSSLTSSR--SQVLNVSGHVAPSEKHPGSLLEGFTQTQVST 194 (446)
Q Consensus 118 ~~~~~~v~~~~~h~~~~-~l~~~~~~~~v~~~~~~~i~~w~~~~~~~--~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~ 194 (446)
+-..+.+.+..+||.-. .+|.+..+. |.|-+|+..++.. ..++-+.+ +..+|++
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~-------G~VG~Wn~~~~~~d~d~v~~f~~----------------hs~~Vs~ 239 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKG-------GQVGLWNFGTQEKDKDGVYLFTP----------------HSGPVSG 239 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCC-------CcEEEEecCCCCCccCceEEecc----------------CCccccc
Confidence 44466788888888765 666555443 6788999853322 12222222 2336888
Q ss_pred EEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee-e
Q 013282 195 LAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL-S 270 (446)
Q Consensus 195 l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~-~ 270 (446)
|.| +...+++.+.||+|++-|++...... .............+++ +.... .++.+.+=|...+||+++... .
T Consensus 240 l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~-v~s~~~d~~~fs~~d~--~~e~~-~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 240 LKFSPANTSQIYSSSYDGTIRLQDFEGNISEE-VLSLDTDNIWFSSLDF--SAESR-SVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred eEecCCChhheeeeccCceeeeeeecchhhHH-HhhcCccceeeeeccc--cCCCc-cEEEeecccceEEEEeecCCccc
Confidence 888 77889999999999999997654221 1111123344455555 55555 455666667999999987554 4
Q ss_pred Eeee-CCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCC--c--eEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEE
Q 013282 271 KHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG--K--TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI 344 (446)
Q Consensus 271 ~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~--~--~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~i 344 (446)
..+. |...|++++++| ...+|++++.|++++|||++.- + ++.....|...|.+..|+|.+-.|+|.++|..|||
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence 4444 777999999999 5557899999999999999843 2 22334469999999999997777999999999999
Q ss_pred EEcc---CCCcceEEEecCCC------ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeecccc-CeEE-EEEcC
Q 013282 345 WDLR---NLSESVAVLKGNLG------AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISG-ISFSP 413 (446)
Q Consensus 345 wd~~---~~~~~~~~~~~~~~------~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~sp 413 (446)
||.. ..-.+..++. |.. ..-...|.|+..++++|-.-..|-|||-..++.+.++.+... .|.+ ..|+|
T Consensus 396 ~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 396 FDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred eecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 9984 2123344443 221 233568999999999999989999999888876777655433 4444 58999
Q ss_pred CCCcEEEEE
Q 013282 414 DTESLFIGV 422 (446)
Q Consensus 414 dg~~l~~~~ 422 (446)
-+..+++|+
T Consensus 475 ~~~~~~aG~ 483 (498)
T KOG4328|consen 475 MRDTLAAGG 483 (498)
T ss_pred cccceeccC
Confidence 888677665
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=1.3e-17 Score=149.08 Aligned_cols=221 Identities=16% Similarity=0.233 Sum_probs=175.1
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCCee----eEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPGVS----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd 263 (446)
+|..++| +.+.||+|+.|.+|.||.+..++.. .....+.+|...|..+.+ +|...++|++++.|.+|.+|+
T Consensus 83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~w--HPtA~NVLlsag~Dn~v~iWn 160 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQW--HPTAPNVLLSAGSDNTVSIWN 160 (472)
T ss_pred cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEee--cccchhhHhhccCCceEEEEe
Confidence 6778887 8899999999999999999766522 224566789999998887 898888999999999999999
Q ss_pred cCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCC-ceeEEEECCCCCEEEEEe---CC
Q 013282 264 MGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD-FSFASAWHPNGVTFATGN---QD 339 (446)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l~sgs---~d 339 (446)
+.+++.+.++.|+..|.++.|+.+|.+|++++.|..|+|||.++++.+..-.+|.+ .-..+-|-.+|.++-||- .+
T Consensus 161 v~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 161 VGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred ccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence 99999999999999999999999999999999999999999999999998888875 334566778888665554 37
Q ss_pred CcEEEEEccCCCcceE--EEecCCCceEEEEEccCCCEEE-EEeCCCeEEEEEcCCCeeEeEeec---cccCeEEEEEcC
Q 013282 340 KTCRIWDLRNLSESVA--VLKGNLGAIRSIRYTSDGRYMA-TAEPADFVHVYDVKSGYEKEQEID---FFGEISGISFSP 413 (446)
Q Consensus 340 ~~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~-~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~sp 413 (446)
.++-+||..+...++. .+.. +..|.---|.||...|+ +|-.|+.|+-|.+....+...+.. ...+-.++.|-|
T Consensus 241 Rq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 241 RQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred cceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence 7899999987666543 3444 34566667888888775 455799999999987653333222 223456677776
Q ss_pred C
Q 013282 414 D 414 (446)
Q Consensus 414 d 414 (446)
.
T Consensus 320 K 320 (472)
T KOG0303|consen 320 K 320 (472)
T ss_pred c
Confidence 3
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=1.1e-18 Score=149.82 Aligned_cols=225 Identities=16% Similarity=0.248 Sum_probs=173.3
Q ss_pred CcEEEEecc----CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC-------CcEEEEecCcc
Q 013282 199 DKLLVAGGF----QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-------CGVRDFDMGKY 267 (446)
Q Consensus 199 ~~~l~tg~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d-------g~v~iwd~~~~ 267 (446)
.-.+++|.. ++.|.+..++..+.....+.+.++.+.|..+.- +|....+|+++.++ -.+.||.++..
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las--~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLAS--SPFDQRILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhc--CCCCCceEEEEEeccCCCcceeeEEEEecccc
Confidence 344556653 578888888777665556777888899999887 89888888888653 23679988642
Q ss_pred ---------eeeEeee--CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce-EEEec-----CCCCceeEEEECC--
Q 013282 268 ---------QLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT-IASLC-----GHLDFSFASAWHP-- 328 (446)
Q Consensus 268 ---------~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~-----~~~~~v~~~~~~p-- 328 (446)
+++..+. +-+.|.|+.|.|++..+++.. +..|.+|++..+.. +..+. ++....++-+|+|
T Consensus 104 ~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 104 LGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred cCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence 2233333 345899999999999998876 67899999987655 44443 2456778889999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCC-EEEEEeCCCeEEEEEcCCCe-eEeEeeccccCe
Q 013282 329 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGY-EKEQEIDFFGEI 406 (446)
Q Consensus 329 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v 406 (446)
+|+.+++. .|+++..||+|+..+....-.+|...|+.+.|+|+.+ +|++++.||.|+|||+++.+ ++..+.+|...|
T Consensus 183 dgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 183 DGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred ccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 78888876 4889999999986655555667888999999999876 67889999999999998754 677788899999
Q ss_pred EEEEEcCC-CCcEEEEEecCCc
Q 013282 407 SGISFSPD-TESLFIGVWDRTY 427 (446)
Q Consensus 407 ~~~~~spd-g~~l~~~~~D~~~ 427 (446)
.++.|+|. .++|++|+.|..+
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred EEEEecCccceEEEecCCCcee
Confidence 99999995 4567788888765
No 161
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2.6e-18 Score=147.56 Aligned_cols=232 Identities=17% Similarity=0.179 Sum_probs=170.6
Q ss_pred eEEEEEe---CCcEEEEeccC-------CcEEEEEcCCCCeee------EE-EEeecCCCceeeEEEEeCCCCCeEEEEE
Q 013282 191 QVSTLAV---KDKLLVAGGFQ-------GELICKHLDRPGVSF------CS-RTTYDDNAITNAVEIYGSPSGAVHFTAS 253 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~d-------g~i~vw~~~~~~~~~------~~-~~~~~~~~~v~~i~~~~s~~~~~~l~s~ 253 (446)
.|..++. +.+.|+|+..+ -.+.||.+..+.... +. .+-..+-+.++++.| .|++.+ +++-
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew--~Pns~k-lasm 141 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW--EPNSDK-LASM 141 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE--cCCCCe-eEEe
Confidence 4555544 56666665431 236789886553221 11 111133456777777 898875 5544
Q ss_pred eCCCcEEEEecCccee-eEeee------CCCCeeEEEECC--CCCEEEEEecCCcEEEEECCCCceEEEec-CCCCceeE
Q 013282 254 NNDCGVRDFDMGKYQL-SKHFR------FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFA 323 (446)
Q Consensus 254 s~dg~v~iwd~~~~~~-~~~~~------~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~ 323 (446)
.|..|.+|++..+.. +..+. +....++-+|+| +++.+++.+ ++++..||+++.+....+. +|...|..
T Consensus 142 -~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrd 219 (370)
T KOG1007|consen 142 -DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRD 219 (370)
T ss_pred -ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeee
Confidence 489999999976554 33332 344577888999 888887765 6799999999988777765 68888999
Q ss_pred EEECCCC-CEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCCe-------
Q 013282 324 SAWHPNG-VTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY------- 394 (446)
Q Consensus 324 ~~~~p~~-~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~------- 394 (446)
+.|+|+. .+|++|+.||.|+|||.|+...++..+.+|...|.++.|+|.. ++|++|+.|..|.+|...+-.
T Consensus 220 lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~ 299 (370)
T KOG1007|consen 220 LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEF 299 (370)
T ss_pred ccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccc
Confidence 9999965 5788999999999999999999999999999999999999965 577899999999999754211
Q ss_pred ----------------------eEeEeeccccCeEEEEEcCCCCcEE-EEEecCCc
Q 013282 395 ----------------------EKEQEIDFFGEISGISFSPDTESLF-IGVWDRTY 427 (446)
Q Consensus 395 ----------------------~~~~~~~~~~~v~~~~~spdg~~l~-~~~~D~~~ 427 (446)
.+.++..|...|.+++||.-..+++ +-++||++
T Consensus 300 ~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 300 EDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred ccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 1234556888999999998777765 45888764
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.9e-18 Score=149.03 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=152.5
Q ss_pred eeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEE
Q 013282 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 313 (446)
Q Consensus 235 v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 313 (446)
..++.| ++.|. +|++|..+|.|.|||+.|..+-+.+. |..+|++++||++|++|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~F--s~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQF--SRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEe--ccCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 455555 99998 79999999999999999999888888 999999999999999999999999999999999999998
Q ss_pred ecCCCCceeEEEECCC-CCEEEEEeCCCcEEEEEccCCCcceEEEecC------CCceEEEEEccCCCEEEEEeCCCeEE
Q 013282 314 LCGHLDFSFASAWHPN-GVTFATGNQDKTCRIWDLRNLSESVAVLKGN------LGAIRSIRYTSDGRYMATAEPADFVH 386 (446)
Q Consensus 314 ~~~~~~~v~~~~~~p~-~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~------~~~v~~l~~s~dg~~l~~~~~dg~i~ 386 (446)
+. ...+|..+.|+|. .+.+++.-.+..-.+-++.. +.+.+-.. .....+..|.+.|+++++|...|.+.
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC---CceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 87 7889999999993 33444433444456666633 22222111 11122346899999999999999999
Q ss_pred EEEcCCCeeEeEeeccc-cCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 387 VYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 387 iwd~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
++|..+.+++..+.-.. ..|..+.|+..|++|++-+.|+.|+..
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTY 223 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEE
Confidence 99999998887776655 679999999999999999999988753
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=9.1e-18 Score=158.40 Aligned_cols=239 Identities=13% Similarity=0.084 Sum_probs=176.8
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|..+.| ....||+++-|.++++|++...+..- .....+|.+.|.+++| .|.+..+|++|+.||.|.|||+.-..
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-~~~~~GH~~SvkS~cf--~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-GRLNLGHTGSVKSECF--MPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeec-ceeecccccccchhhh--ccCCCcceeeccCCCcEEEEEEeccc
Confidence 6888888 56789999999999999998876432 2356789999999988 89888899999999999999986321
Q ss_pred --------------------eeE-------ee-eCCCCeeE---EEECCCCCEEEEEec-CCcEEEEECCCCceEEEe--
Q 013282 269 --------------------LSK-------HF-RFPWPVNH---SSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASL-- 314 (446)
Q Consensus 269 --------------------~~~-------~~-~~~~~v~~---~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~~-- 314 (446)
+.. .. .+...|.. +.+..|...||+++. |+.|++||++........
T Consensus 179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep 258 (720)
T KOG0321|consen 179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP 258 (720)
T ss_pred hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC
Confidence 000 00 02223444 555678889999887 999999999976543322
Q ss_pred ------cCC---CCceeEEEECCCCCEEEEEeCCCcEEEEEccCCC-cceEEEecCCCc--eEEEEEccCCCEEEEEeCC
Q 013282 315 ------CGH---LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLKGNLGA--IRSIRYTSDGRYMATAEPA 382 (446)
Q Consensus 315 ------~~~---~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~-~~~~~~~~~~~~--v~~l~~s~dg~~l~~~~~d 382 (446)
..| .-.+.++.....|.+|.+.+.|++|.+|+++... .++..+.++... -..-..+|++.+|++|+.|
T Consensus 259 ~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 259 RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD 338 (720)
T ss_pred CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence 123 2356778888888888888889999999997643 345555554321 1122358999999999999
Q ss_pred CeEEEEEcCCCe-eEeEeeccccCeEEEEEcCCC-CcEEEEEecCCcceEEE
Q 013282 383 DFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTYGSLLE 432 (446)
Q Consensus 383 g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~spdg-~~l~~~~~D~~~~~~l~ 432 (446)
...++|.+.+.+ .+..+.+|.-.|++++|.|.. .-+++++.|.++..|-.
T Consensus 339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 999999998865 345567899999999998843 33677799998887744
No 164
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=3.1e-18 Score=158.39 Aligned_cols=260 Identities=14% Similarity=0.230 Sum_probs=193.3
Q ss_pred eEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEEeccCCcEEEEE
Q 013282 136 LVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKH 215 (446)
Q Consensus 136 l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~tg~~dg~i~vw~ 215 (446)
+.|.+....+|.+.|..+..|+..+....+++++.....|..-|+|.....-.. ....|+.++.||.+.+.+
T Consensus 20 v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~--------~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 20 VDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGK--------GSDTLLICSNDGRFVILN 91 (737)
T ss_pred ecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCC--------CcceEEEEcCCceEEEec
Confidence 346666777777888889999888887777777766655544444422111000 235688888999888765
Q ss_pred cCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEE
Q 013282 216 LDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIV 294 (446)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~ 294 (446)
- .+.. .+....|.+.+.+-.+ +|+|. -|++++.||.|++|.- +|-+..++. ...+|.|++|.|+.+.++.+
T Consensus 92 k--~~rV--E~sv~AH~~A~~~gRW--~~dGt-gLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 92 K--SARV--ERSISAHAAAISSGRW--SPDGA-GLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred c--cchh--hhhhhhhhhhhhhccc--CCCCc-eeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 3 2221 2455678888877776 99998 5888899999999985 344333333 67889999999988877765
Q ss_pred ecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCC
Q 013282 295 GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 374 (446)
Q Consensus 295 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 374 (446)
.. +.+.|=-+.....+-..+.|.+-|.++.|+|..+++++|+.|-..+|||.. +..+..-..|.-+|++++|.|+ .
T Consensus 164 ~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~ 239 (737)
T KOG1524|consen 164 QG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-K 239 (737)
T ss_pred cC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-c
Confidence 43 467777777666777889999999999999999999999999999999984 7888888889999999999999 5
Q ss_pred EEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 375 YMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 375 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
.++.++. +++++ .....|.|..++|||||..++.|...|.+
T Consensus 240 ~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 240 DYLLWSY-NTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ceeeeee-eeeee-----------cCCCccceEEEEEcCCCceeeccccCceE
Confidence 5555553 22331 12245779999999999999988777654
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.1e-17 Score=163.95 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=180.5
Q ss_pred CeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe----CCcEEEEeccCCcEEEEEcCCCC--eeeE
Q 013282 151 FSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQGELICKHLDRPG--VSFC 224 (446)
Q Consensus 151 ~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~----~~~~l~tg~~dg~i~vw~~~~~~--~~~~ 224 (446)
..|.+||-..++...-+... .+....|+.|.+ +..+|++|+.||.|+||+-.... ....
T Consensus 1086 ~~i~vwd~e~~~~l~~F~n~---------------~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eL 1150 (1387)
T KOG1517|consen 1086 ERIRVWDWEKGRLLNGFDNG---------------AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPEL 1150 (1387)
T ss_pred ceEEEEecccCceeccccCC---------------CCCCCccceeeeecccchhheeeeccCceEEEecccccccCCcee
Confidence 45788998666442222111 122336888888 67899999999999999754332 1111
Q ss_pred EEE---eecCC--CceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee--CCCCeeEEEECC-CCCEEEEEec
Q 013282 225 SRT---TYDDN--AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSP-DGKLLIIVGD 296 (446)
Q Consensus 225 ~~~---~~~~~--~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp-~~~~l~~~~~ 296 (446)
... +.++. ..-..+-+.|..... .|++++.-..|+|||..+..++..+. ....|+++.-+. .|+.+++|..
T Consensus 1151 VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1151 VTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred EEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec
Confidence 111 11111 111123344455555 45666568899999999988888777 344455555433 5799999999
Q ss_pred CCcEEEEECCCC---ceEEEecCCCCc--eeEEEECCCCCE-EEEEeCCCcEEEEEccCC-CcceEEEecCC--C-ceEE
Q 013282 297 NPDGLLVDSMTG---KTIASLCGHLDF--SFASAWHPNGVT-FATGNQDKTCRIWDLRNL-SESVAVLKGNL--G-AIRS 366 (446)
Q Consensus 297 d~~i~i~d~~~~---~~~~~~~~~~~~--v~~~~~~p~~~~-l~sgs~d~~v~iwd~~~~-~~~~~~~~~~~--~-~v~~ 366 (446)
||.|++||.+.. ..+...+.|.+. |..+.+.+.|-- |++|+.+|.|++||+|.. ....-.+..|. | .+++
T Consensus 1230 DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTA 1309 (1387)
T ss_pred CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcccee
Confidence 999999999843 357777889887 999999996654 999999999999999973 22223333433 3 5999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec-------cccCeEEEEEcCCCCcEEEEEecCCcce
Q 013282 367 IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-------FFGEISGISFSPDTESLFIGVWDRTYGS 429 (446)
Q Consensus 367 l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~spdg~~l~~~~~D~~~~~ 429 (446)
+..+++...+|+|+. +.|+||++.. +.+..+.. ..+.+.+++|+|---.|++|..|.++..
T Consensus 1310 l~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred eeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 999999999999998 9999999764 33333332 2256899999999888888887776654
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=8.1e-18 Score=157.61 Aligned_cols=233 Identities=16% Similarity=0.118 Sum_probs=181.7
Q ss_pred ceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 190 TQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 190 ~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
..|.|++. .|.+|++|+.||+|+||.+.++. |.+... ..+.|.++.| +|.+..-+++.+....+.|.+..-|
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR---cvr~~~-~d~~I~~vaw--~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGR---CVRTVQ-FDSEIRSVAW--NPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecce---EEEEEe-ecceeEEEEe--cCCCCceeEEEEecCceEEeCcccc
Confidence 36788877 89999999999999999999884 434332 2446888877 7766544444444444444332111
Q ss_pred --------------------------------------eeeEeeeCCCCeeEEEECCCCCEEEEEec---CCcEEEEECC
Q 013282 268 --------------------------------------QLSKHFRFPWPVNHSSQSPDGKLLIIVGD---NPDGLLVDSM 306 (446)
Q Consensus 268 --------------------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~ 306 (446)
.+...+.|..+|+.+.||..|.+|++... +..|.|+++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 01234557888999999999999988754 5678999998
Q ss_pred CCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEE
Q 013282 307 TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVH 386 (446)
Q Consensus 307 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~ 386 (446)
..+....|.-..+.|.++.|||...+|+++++. .|+|||+.. ...+..+......|.+++.+|.|..|+.|+.|+.+.
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k-qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK-QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhH-HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeE
Confidence 777666676667889999999999999988865 699999965 677777777788999999999999999999999999
Q ss_pred EEEcCCC-eeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 387 VYDVKSG-YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 387 iwd~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.||+.-. +..+.+..|...+++++|++.=.++++|+.|+++-.+
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999865 3556667789999999999999999999999987554
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.8e-17 Score=138.05 Aligned_cols=216 Identities=13% Similarity=0.174 Sum_probs=158.4
Q ss_pred EEEeCCcEEEEeccCCcEEEEEcCCCC-------eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc
Q 013282 194 TLAVKDKLLVAGGFQGELICKHLDRPG-------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 194 ~l~~~~~~l~tg~~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
++++.+++|++|..+|.|.++.+...- ........+.|.+++..+.++ + . +|++| .||.|+-|....
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d-~-~Lls~-gdG~V~gw~W~E 90 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---D-D-FLLSG-GDGLVYGWEWNE 90 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---h-h-heeec-cCceEEEeeehh
Confidence 345578999999999999999886321 112234457899999999883 2 2 56666 559999997643
Q ss_pred cee------eEeee--------CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCE
Q 013282 267 YQL------SKHFR--------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT 332 (446)
Q Consensus 267 ~~~------~~~~~--------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 332 (446)
... +.... .-..|+++.+.|..+-++.++.|+.++-||+++|+..+.++||+++|.++.-......
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 221 11111 1234899999998888888889999999999999999999999999999998665667
Q ss_pred EEEEeCCCcEEEEEccCCCcceEEEecC----------CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeecc
Q 013282 333 FATGNQDKTCRIWDLRNLSESVAVLKGN----------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 402 (446)
Q Consensus 333 l~sgs~d~~v~iwd~~~~~~~~~~~~~~----------~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 402 (446)
+++|+.||++||||+++ .+.+..+... ...|.+++-+ ..+|++|+. ..+.+|++++.++...+. .
T Consensus 171 ilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vfp-i 245 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFP-I 245 (325)
T ss_pred eeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEEe-c
Confidence 99999999999999976 7777766432 1246666554 458887764 459999999887665544 5
Q ss_pred ccCeEEEEEcCCCCcEEEEE
Q 013282 403 FGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 403 ~~~v~~~~~spdg~~l~~~~ 422 (446)
.+++..+.|..+ .+++++
T Consensus 246 pa~v~~v~F~~d--~vl~~G 263 (325)
T KOG0649|consen 246 PARVHLVDFVDD--CVLIGG 263 (325)
T ss_pred ccceeEeeeecc--eEEEec
Confidence 677888888765 344444
No 168
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=5.8e-17 Score=158.13 Aligned_cols=266 Identities=15% Similarity=0.159 Sum_probs=189.1
Q ss_pred EEEecCCeEEEEecCCCCc-eEEEecCCCCCCCCCCCCCccccCccceEEEEEe---CCcEEEEeccCCcEEEEEcCCCC
Q 013282 145 VYLMSHFSVIHWSSLTSSR-SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPG 220 (446)
Q Consensus 145 v~~~~~~~i~~w~~~~~~~-~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~ 220 (446)
++..+++.+.+|+...... ...+.. +..|.|+.+ +.++||.|..+|+|.+||+....
T Consensus 216 ~~~~~~~~~~vW~~~~p~~Pe~~~~~-------------------~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~ 276 (555)
T KOG1587|consen 216 LLSEPDGVLLVWSLKNPNTPELVLES-------------------PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGS 276 (555)
T ss_pred ccccCCceEEEEecCCCCCceEEEec-------------------CCceeEEEeccCCcceEEeeccCceEEEEEccCCC
Confidence 3334445788898866622 222221 125777776 89999999999999999998776
Q ss_pred ee--e-EEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee------eE-------eeeCCCCeeEEEE
Q 013282 221 VS--F-CSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL------SK-------HFRFPWPVNHSSQ 284 (446)
Q Consensus 221 ~~--~-~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~------~~-------~~~~~~~v~~~~~ 284 (446)
.. . .......|..++..+.+..++.+. -|++++.||.|..|+++.-.. .. .......+++++|
T Consensus 277 ~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~-~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F 355 (555)
T KOG1587|consen 277 DTPPSGLSALEVSHSEPVTAVVWLQNEHNT-EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKF 355 (555)
T ss_pred CCCCcccccccccCCcCeEEEEEeccCCCC-ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEee
Confidence 42 1 123345677777777776666663 488888999999998764221 11 1112345889999
Q ss_pred CC-CCCEEEEEecCCcEEEEECCCCc--------eEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceE
Q 013282 285 SP-DGKLLIIVGDNPDGLLVDSMTGK--------TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA 355 (446)
Q Consensus 285 sp-~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~ 355 (446)
.| +...+++|++.|.|+--.....+ .+..+..|.++|+++.++|-+..++..+.|.+|+||.......++.
T Consensus 356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL 435 (555)
T ss_pred ccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch
Confidence 88 67789999999999875543221 1334556889999999999554444433499999999863467888
Q ss_pred EEecCCCceEEEEEccCCC-EEEEEeCCCeEEEEEcCCCe--eEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 356 VLKGNLGAIRSIRYTSDGR-YMATAEPADFVHVYDVKSGY--EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 356 ~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.+..+...|++++|||... .++++..+|.|.|||+.... ++....-+....+.+.|++.|+.|++|...|++..+
T Consensus 436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 8888888899999999874 67788889999999997542 333333345567788899999999999999877543
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=2.3e-17 Score=156.34 Aligned_cols=265 Identities=13% Similarity=0.193 Sum_probs=204.8
Q ss_pred eeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCc
Q 013282 133 LRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGE 210 (446)
Q Consensus 133 ~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~ 210 (446)
..++.+.+...++..+.+..+.++|+..+ ..+-.++||.. .|.|+++ +|..+++|+.|..
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG--~llqtLKgHKD----------------tVycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDG--TLLQPLKGHKD----------------TVYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCc--ccccccccccc----------------eEEEEEEccCCceeccCCCcee
Confidence 44566666666677777778888888666 44445666644 5999999 9999999999999
Q ss_pred EEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCE
Q 013282 211 LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKL 290 (446)
Q Consensus 211 i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~ 290 (446)
|.+|+-...+. ....|+..+.++.| +|-.. ++++++.. ..-+|..... .+...+....+.+.+|..||.+
T Consensus 77 VI~W~~klEG~-----LkYSH~D~IQCMsF--NP~~h-~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqy 146 (1081)
T KOG1538|consen 77 VIIWTSKLEGI-----LKYSHNDAIQCMSF--NPITH-QLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQY 146 (1081)
T ss_pred EEEecccccce-----eeeccCCeeeEeec--CchHH-Hhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcE
Confidence 99998765543 23468888999887 89876 57777543 3557776543 3344445667999999999999
Q ss_pred EEEEecCCcEEEEECCCCceEEEec---CCCCceeEEEECCCC-----CEEEEEeCCCcEEEEEccCCCcceEEEecCCC
Q 013282 291 LIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNG-----VTFATGNQDKTCRIWDLRNLSESVAVLKGNLG 362 (446)
Q Consensus 291 l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~p~~-----~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~ 362 (446)
|+.|-.+|+|.|-+- +|++...+. |...+|.+++|+|.. ..++...+..++.++.+. ++.+..-+.-.-
T Consensus 147 lalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~F 223 (1081)
T KOG1538|consen 147 LALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIGKDRALNF 223 (1081)
T ss_pred EEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeecccccCCC
Confidence 999999999999864 444444443 467899999999943 578888889999999883 555554443344
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcce
Q 013282 363 AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 429 (446)
Q Consensus 363 ~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~ 429 (446)
...|+.+.|+|.++..|+.|+.+++|- +.|-.+.++-.....|..++..|+++++++|+.||++.-
T Consensus 224 dP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 224 DPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred CchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 567999999999999999999999997 678777777777789999999999999999999999853
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=4.9e-16 Score=147.41 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=152.0
Q ss_pred EEEeCCcEEEEe-ccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-ce---
Q 013282 194 TLAVKDKLLVAG-GFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQ--- 268 (446)
Q Consensus 194 ~l~~~~~~l~tg-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~-~~--- 268 (446)
++++++++|+++ ..++.|.+|++...+........ ...+....+.+ +|+++.++++...++.|.+|++.+ +.
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 455588888665 45788999999743322111111 12223345555 999996565655689999999964 32
Q ss_pred eeEeeeCCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCceEE-------EecCCCCceeEEEECCCCCEEEEEeC-C
Q 013282 269 LSKHFRFPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIA-------SLCGHLDFSFASAWHPNGVTFATGNQ-D 339 (446)
Q Consensus 269 ~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~l~sgs~-d 339 (446)
.+..+.....+.+++++|+++++++++ .++.|.+||+.+...+. .+.. ......++|+|+|+++++++. +
T Consensus 118 ~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 118 PIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred ceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCC
Confidence 233333334567889999999886555 56899999997633221 1111 234567999999999988877 8
Q ss_pred CcEEEEEccCC-C--cceEEEecC------CCceEEEEEccCCCEEEEEeC-CCeEEEEEcCCCeeEeEeecc---ccCe
Q 013282 340 KTCRIWDLRNL-S--ESVAVLKGN------LGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDF---FGEI 406 (446)
Q Consensus 340 ~~v~iwd~~~~-~--~~~~~~~~~------~~~v~~l~~s~dg~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~---~~~v 406 (446)
++|.+|++... + +.+..+... ......+.|+|+|++|+++.. ++.|.+|++.+......+..+ ....
T Consensus 197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p 276 (330)
T PRK11028 197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP 276 (330)
T ss_pred CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence 99999999632 1 223333221 112346889999999998864 689999998653322222222 2346
Q ss_pred EEEEEcCCCCcEEEEEe-cCCcceE
Q 013282 407 SGISFSPDTESLFIGVW-DRTYGSL 430 (446)
Q Consensus 407 ~~~~~spdg~~l~~~~~-D~~~~~~ 430 (446)
..+.|+|+|++|+++.. ++++..+
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEE
Confidence 68999999999998875 5555443
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=3.5e-17 Score=140.85 Aligned_cols=229 Identities=14% Similarity=0.086 Sum_probs=168.8
Q ss_pred eEEEEEe--C-----CcEEEEeccCCcEEEEEcCCCCeeeEE------EEeecCCCceeeEEEEeCCCCCeEEEEEeCCC
Q 013282 191 QVSTLAV--K-----DKLLVAGGFQGELICKHLDRPGVSFCS------RTTYDDNAITNAVEIYGSPSGAVHFTASNNDC 257 (446)
Q Consensus 191 ~v~~l~~--~-----~~~l~tg~~dg~i~vw~~~~~~~~~~~------~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg 257 (446)
+++.+.| + ..+|||.+ -.+++|.+.......+. .....+.+++++.++ +.-...++.++|-|.
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGTSSIDT 173 (364)
T ss_pred CccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEeecccC
Confidence 4566666 1 24566654 46999999753321111 112345567777766 666666899999999
Q ss_pred cEEEEecCccee----eEeeeCCCCeeEEEECCCCC-EEEEEecCCcEEEEECCCCceEEEe-c--CCCCceeEEEECC-
Q 013282 258 GVRDFDMGKYQL----SKHFRFPWPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASL-C--GHLDFSFASAWHP- 328 (446)
Q Consensus 258 ~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~--~~~~~v~~~~~~p- 328 (446)
+..|||++++.. .+.+.|...|..++|...+. .||++|.||.+++||++...--..+ + ....+...++|++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 999999998733 34455999999999998554 7799999999999999865422222 2 2256788899998
Q ss_pred CCCEEEEEeCC-CcEEEEEccCCCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCCee-----EeEeec
Q 013282 329 NGVTFATGNQD-KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGYE-----KEQEID 401 (446)
Q Consensus 329 ~~~~l~sgs~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~ 401 (446)
+.+++||-..| ..|.|.|+|.+..++..+.+|.+.|+.|+|.|.. ..|++++.|.++.|||+.+--. ......
T Consensus 254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~ 333 (364)
T KOG0290|consen 254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT 333 (364)
T ss_pred CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh
Confidence 67888887665 4799999999999999999999999999999976 5899999999999999986422 111112
Q ss_pred cccCeEEEEEcC-CCCcEEEEEe
Q 013282 402 FFGEISGISFSP-DTESLFIGVW 423 (446)
Q Consensus 402 ~~~~v~~~~~sp-dg~~l~~~~~ 423 (446)
..++|+.+.|+| .+..++++..
T Consensus 334 a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 334 AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccceeeeeeecccCCCEEEEEec
Confidence 457899999996 4667776653
No 172
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.78 E-value=8.7e-18 Score=158.52 Aligned_cols=251 Identities=17% Similarity=0.242 Sum_probs=171.5
Q ss_pred ceeeccce-eeeEEecccCe-EEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe---CCc
Q 013282 126 STILHFQL-RNLVWATSKHD-VYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDK 200 (446)
Q Consensus 126 ~~~~h~~~-~~l~~~~~~~~-v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~---~~~ 200 (446)
-...|+.. -.+.|+.++-. |..+.|.+++.|++...+..-.-..-||.. .|.+++| +..
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~----------------SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG----------------SVKSECFMPTNPA 158 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc----------------ccchhhhccCCCc
Confidence 33444433 34567765544 444668899999998776443322334322 3555555 889
Q ss_pred EEEEeccCCcEEEEEcCCCCe----eeEEEEeec--------------------CC-CceeeEEEEeCCCCCeEEEEEeC
Q 013282 201 LLVAGGFQGELICKHLDRPGV----SFCSRTTYD--------------------DN-AITNAVEIYGSPSGAVHFTASNN 255 (446)
Q Consensus 201 ~l~tg~~dg~i~vw~~~~~~~----~~~~~~~~~--------------------~~-~~v~~i~~~~s~~~~~~l~s~s~ 255 (446)
.+++|+.||.|.|||+..... .++..+... +. .+-..|...+..+.. .|++++.
T Consensus 159 vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga 237 (720)
T KOG0321|consen 159 VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGA 237 (720)
T ss_pred ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccC
Confidence 999999999999999874431 011111111 11 122223344457766 4776666
Q ss_pred -CCcEEEEecCcceeeEe------ee---C---CCCeeEEEECCCCCEEEEEecCCcEEEEECCCC--ceEEEecCCCCc
Q 013282 256 -DCGVRDFDMGKYQLSKH------FR---F---PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG--KTIASLCGHLDF 320 (446)
Q Consensus 256 -dg~v~iwd~~~~~~~~~------~~---~---~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~ 320 (446)
|+.|++||+.+...... .. + ...+.++.....|.+|++.+.|+.|++|++.+- .++..+.++...
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~ 317 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS 317 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc
Confidence 99999999986443221 11 2 234677888888899988888999999999754 345555554432
Q ss_pred --eeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCC
Q 013282 321 --SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 321 --v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~ 393 (446)
-..-..+|++.++++|+.|....+|.+.+.......+.+|.-.|++++|.|.. .-+++++.|..++||++..+
T Consensus 318 sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 318 SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 22345789999999999999999999988788888999999999999998843 34666799999999998654
No 173
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.78 E-value=3.1e-17 Score=156.15 Aligned_cols=280 Identities=18% Similarity=0.187 Sum_probs=203.9
Q ss_pred Eeccc-CeEEEecCCeEEEEecCCCCc--eEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEE
Q 013282 138 WATSK-HDVYLMSHFSVIHWSSLTSSR--SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 212 (446)
Q Consensus 138 ~~~~~-~~v~~~~~~~i~~w~~~~~~~--~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~ 212 (446)
|.+.. ..+..+.|.++++|-..+... ...+.+.+ +. . .+| .....-| +++.+++-+.-|..+
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe-~g--g-~a~---------GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE-VG--G-SAG---------GFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred EccchhhheecccCcceEEEecCCccceEEEEEEeec-cc--c-ccc---------ceeeEEEcCCCCEEEEecccCcEE
Confidence 44444 445556688899997755422 23332221 11 0 000 2334344 788899999999999
Q ss_pred EEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce-eeEee---e-CCCCeeEEEECCC
Q 013282 213 CKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHF---R-FPWPVNHSSQSPD 287 (446)
Q Consensus 213 vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~---~-~~~~v~~~~~sp~ 287 (446)
+|.......-.......+|...|..+++ +|.|. +|++.+.|.+-|+|-.-..+ .-+.+ + |...++|+++-+.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W--~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDW--DPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred EEeccCccceeeccccccccccceeeee--cCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9994443333334566789999999988 99998 79999999999998754211 11222 2 7888999999886
Q ss_pred CCEEEEEecCCcEEEEECCC----------C---------------------------------ce--------------
Q 013282 288 GKLLIIVGDNPDGLLVDSMT----------G---------------------------------KT-------------- 310 (446)
Q Consensus 288 ~~~l~~~~~d~~i~i~d~~~----------~---------------------------------~~-------------- 310 (446)
...+++|.+...+++|+... + ..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 66778887777778776421 0 00
Q ss_pred -------------------EEEecCCCCceeEEEECCCCCEEEEEeCCC-----cEEEEEccCCCcceEEEecCCCceEE
Q 013282 311 -------------------IASLCGHLDFSFASAWHPNGVTFATGNQDK-----TCRIWDLRNLSESVAVLKGNLGAIRS 366 (446)
Q Consensus 311 -------------------~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~-----~v~iwd~~~~~~~~~~~~~~~~~v~~ 366 (446)
++++.||.-.|++++.+|+|+++|+++... .|++|+..+ ...++.+.+|+-.|+.
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLTVTR 577 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhhheecccceEEEE
Confidence 011247888899999999999999998644 599999966 6777899999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCCCe----eEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEEEe
Q 013282 367 IRYTSDGRYMATAEPADFVHVYDVKSGY----EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 434 (446)
Q Consensus 367 l~~s~dg~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~~ 434 (446)
|+|||||++|++++.|.++.+|...... .......|.--|..+.|+|++.++++++-|.+++.|-+-.
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 9999999999999999999999875432 2223556888899999999999999999999998876543
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=5.8e-16 Score=150.59 Aligned_cols=235 Identities=25% Similarity=0.378 Sum_probs=185.9
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeec-CCCceeeEEEEeCCCCCeEEEEE-eCCCcEEEEecCc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGK 266 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~i~~~~s~~~~~~l~s~-s~dg~v~iwd~~~ 266 (446)
.+.++.+ .+..++.++.++.+.+|+....... ...... +...+..+.+. ++++...++.. ..|+.+++|++..
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL--IKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee--EEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEEEEEecC
Confidence 4666666 7888999999999999999877511 222223 22356666665 67776344444 4499999999987
Q ss_pred -ceeeEeee-CCCCeeEEEECCCCCEEEEEec-CCcEEEEECCCCceEEEecCCCCceeEEEECCCCC-EEEEEeCCCcE
Q 013282 267 -YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-TFATGNQDKTC 342 (446)
Q Consensus 267 -~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~d~~v 342 (446)
......+. |...|..+.|+|++..+++++. ++.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|++|
T Consensus 144 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 56666555 8889999999999998888885 99999999999899999999999999999999998 55555899999
Q ss_pred EEEEccCCCcceE-EEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee-EeEeeccccCeEEEEEcCCCCcEEE
Q 013282 343 RIWDLRNLSESVA-VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE-KEQEIDFFGEISGISFSPDTESLFI 420 (446)
Q Consensus 343 ~iwd~~~~~~~~~-~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~ 420 (446)
++||... +..+. .+.+|...+ ...|+|++.++++++.++.+++|++..... ......|...+.++.|+|++..+++
T Consensus 224 ~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 224 RLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred EEEECCC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 9999864 56666 688887765 448999998999999999999999987664 4444567889999999999999998
Q ss_pred EEecCCcceE
Q 013282 421 GVWDRTYGSL 430 (446)
Q Consensus 421 ~~~D~~~~~~ 430 (446)
++.|+.+..+
T Consensus 302 ~~~d~~~~~~ 311 (466)
T COG2319 302 GSSDGTVRLW 311 (466)
T ss_pred eeCCCcEEEE
Confidence 8888654444
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=4.2e-18 Score=144.59 Aligned_cols=235 Identities=14% Similarity=0.107 Sum_probs=173.4
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~ 269 (446)
.|+++.| ...+|.+|..-|.|++|.+.+..... ..-..+...++.+.. -|++ .+.+-+.|+.+.+|++.-...
T Consensus 16 ~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~--~~r~~g~~~it~lq~--~p~d--~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 16 SVTSVLFQANERLMSGLSVGIVKMWVLQTERDLP--LIRLFGRLFITNLQS--IPND--SLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred hheehhhccchhhhcccccceEEEEEeecCccch--hhhhhccceeeceee--cCCc--chhhcCCCceEEEEEccCcce
Confidence 5888888 55679999999999999998775442 122245556677666 5665 478888999999998865221
Q ss_pred eEe--e------------e----------------------------------------CCCCeeEEEECC-CCC--EEE
Q 013282 270 SKH--F------------R----------------------------------------FPWPVNHSSQSP-DGK--LLI 292 (446)
Q Consensus 270 ~~~--~------------~----------------------------------------~~~~v~~~~~sp-~~~--~l~ 292 (446)
+.. + . ..+.+.|..+.. .++ +++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 110 0 0 001133333211 222 457
Q ss_pred EEecCCcEEEEECCCCceE----------EEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcce---EEEec
Q 013282 293 IVGDNPDGLLVDSMTGKTI----------ASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV---AVLKG 359 (446)
Q Consensus 293 ~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~---~~~~~ 359 (446)
+|..+|.+.+||+.++..+ .....|..+|.++.+.+.-..=++|+.+..+..|.+......+ ..+.-
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 7889999999999988433 3334689999999999866666788888899999985431111 22223
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 360 NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 360 ~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
....|..+.+-||++.+|+++-|+.||||..++..++..+..|.+.|++++|+|+...||+++.|++|.-|-
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 344688999999999999999999999999999999999999999999999999999999999999987653
No 176
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=3.3e-18 Score=161.07 Aligned_cols=199 Identities=21% Similarity=0.248 Sum_probs=153.7
Q ss_pred EEEeCCcEEEE--eccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc----
Q 013282 194 TLAVKDKLLVA--GGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY---- 267 (446)
Q Consensus 194 ~l~~~~~~l~t--g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~---- 267 (446)
.++.+..+++. .|.-|.|-||+++.++...-..+..-.+ .....++.|.|-....|++++.||.|++|.+..+
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N-gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN-GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccccccc-CceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 33444444443 4567899999999887543222211111 2234556669988778999999999999998653
Q ss_pred ---eeeEeee-CCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcE
Q 013282 268 ---QLSKHFR-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342 (446)
Q Consensus 268 ---~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v 342 (446)
.+...+. |...|.++.|+| -.+.|++++.|-+|.|||+++++....|.+|.+.|+.++|+|+|+.+|+.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 2334455 888999999999 66788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCcceEEEecCCC-ceEEEEEccCCCEEEEEeCCC----eEEEEEcCCC
Q 013282 343 RIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAEPAD----FVHVYDVKSG 393 (446)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~-~v~~l~~s~dg~~l~~~~~dg----~i~iwd~~~~ 393 (446)
++|..++..++++.-++..+ .--.|.|.-+|+++++.+.|. +|.+||.++-
T Consensus 745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 99999887677766554322 234578999999999887664 5889987753
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=3.6e-15 Score=145.03 Aligned_cols=258 Identities=26% Similarity=0.399 Sum_probs=192.3
Q ss_pred cCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEE---EeCCc-EEEEecc-CCcEEEEEcCCCCeee
Q 013282 149 SHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTL---AVKDK-LLVAGGF-QGELICKHLDRPGVSF 223 (446)
Q Consensus 149 ~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l---~~~~~-~l~tg~~-dg~i~vw~~~~~~~~~ 223 (446)
.++.+.+|+..... .....+.+... ..+..+ ..++. .++..+. ++.+.+|++.... .
T Consensus 85 ~d~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~ 146 (466)
T COG2319 85 SDGTIKLWDLDNGE-KLIKSLEGLHD---------------SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG--K 146 (466)
T ss_pred CCCcEEEEEcCCCc-eeEEEEeccCC---------------CceeeEEEECCCcceEEeccCCCCccEEEEEecCCC--e
Confidence 47888999987774 12222222100 012222 33455 4555444 9999999997622 2
Q ss_pred EEEEeecCCCceeeEEEEeCCCCCeEEEEEeC-CCcEEEEecCcceeeEeee-CCCCeeEEEECCCCC-EEEEEecCCcE
Q 013282 224 CSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGK-LLIIVGDNPDG 300 (446)
Q Consensus 224 ~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~-~l~~~~~d~~i 300 (446)
.......|...+..+.+ +|++. .+++++. ++.+++|++..+..+..+. |...|.+++|+|++. .+++++.++.|
T Consensus 147 ~~~~~~~~~~~v~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 147 LIRTLEGHSESVTSLAF--SPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred EEEEEecCcccEEEEEE--CCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 23555678888887777 89988 5777765 9999999999888887777 789999999999998 55555899999
Q ss_pred EEEECCCCceEE-EecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEE
Q 013282 301 LLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379 (446)
Q Consensus 301 ~i~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 379 (446)
++||...+..+. .+.+|...+ ...|+|++..+++++.|+.+++|+++.....+..+.+|...+.++.|+|++..++++
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 999999888888 688888875 448999999999999999999999986444345556788899999999988888889
Q ss_pred eCCCeEEEEEcCCCeeEeEee--ccccCeEEEEEcCCCCcEEEE-EecCCcc
Q 013282 380 EPADFVHVYDVKSGYEKEQEI--DFFGEISGISFSPDTESLFIG-VWDRTYG 428 (446)
Q Consensus 380 ~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~-~~D~~~~ 428 (446)
+.++.+++|++.+........ .|...+..+.|.+++..++.+ ..|+.+.
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 989889999999887666665 677789999994333556666 4554433
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.4e-17 Score=155.24 Aligned_cols=233 Identities=12% Similarity=0.115 Sum_probs=167.1
Q ss_pred CCeEEEEecCCC------CceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCC-
Q 013282 150 HFSVIHWSSLTS------SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG- 220 (446)
Q Consensus 150 ~~~i~~w~~~~~------~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~- 220 (446)
++.+.+|+.... ....++.+.+|.. +|.|+++ ++..+++||.||+|++|++..+.
T Consensus 315 d~~lk~WnLqk~~~s~~~~~epi~tfraH~g----------------PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 315 DGTLKLWNLQKAKKSAEKDVEPILTFRAHEG----------------PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred ccchhhhhhcccCCccccceeeeEEEecccC----------------ceEEEEecCCceEEEeeccCceeeeeccCCCCC
Confidence 455677877221 1356666776654 5888888 89999999999999999775322
Q ss_pred ------eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee---CCCCeeEEEECCCC-CE
Q 013282 221 ------VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNHSSQSPDG-KL 290 (446)
Q Consensus 221 ------~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~-~~ 290 (446)
.......+.+|...|..+.+ ++... .|++++.||+|++|......+ .+|. ..+...++.+-... .+
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~--s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~ 454 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLAL--SSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAH 454 (577)
T ss_pred cccccCcchhccceeccccceeeeee--ccccc-ceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHh
Confidence 11223456688888988888 66655 599999999999999876665 3333 22223444443222 23
Q ss_pred EEEEecCCcEEEEECCCCceEEEecC-------CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCc
Q 013282 291 LIIVGDNPDGLLVDSMTGKTIASLCG-------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 363 (446)
Q Consensus 291 l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~ 363 (446)
.++....+.-.+++...++.+..+.. -...+..+.++|.+.+.+++..|+.|+++|... +.++.....|...
T Consensus 455 ~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~s 533 (577)
T KOG0642|consen 455 SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDS 533 (577)
T ss_pred hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc-cccchheeeccce
Confidence 33333344444555555555555442 124567789999999999999999999999966 8999999999999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccc
Q 013282 364 IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF 403 (446)
Q Consensus 364 v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 403 (446)
++++++.|+|.+|++++.|+.|++|.+....++.....|.
T Consensus 534 vtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 534 VTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999999999999987766665555443
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=143.71 Aligned_cols=218 Identities=18% Similarity=0.243 Sum_probs=169.0
Q ss_pred CCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEE
Q 013282 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (446)
Q Consensus 150 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~ 227 (446)
+..|.+||..+++....+..-.|... +. ...+|+| ||..|++|- ...|++|++..++.......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de-----------~t--aAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDE-----------YT--AAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHh-----------hh--hheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchh
Confidence 66799999999976655444333221 11 2445566 888888775 56799999976653221111
Q ss_pred e-----ecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEec-CCcE
Q 013282 228 T-----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD-NPDG 300 (446)
Q Consensus 228 ~-----~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-d~~i 300 (446)
+ .+..+++.++++ +|.....++.++....+-|+.-..+.++..+. |.+.|+.+.|.++|+.|++|.. +..|
T Consensus 198 t~~~~k~gq~giisc~a~--sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAF--SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hhhcccccccceeeeeec--cCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 1 234677888877 89888789999999999999888888887776 9999999999999999999875 7789
Q ss_pred EEEECC-CCceEEEecCCCC-ceeE--EEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEE
Q 013282 301 LLVDSM-TGKTIASLCGHLD-FSFA--SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM 376 (446)
Q Consensus 301 ~i~d~~-~~~~~~~~~~~~~-~v~~--~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 376 (446)
..||++ .+.++..|..|.+ .-.. ....|.+++|++|+.||.|++||++..+..+..+..+...++.++++|--.++
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpil 355 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPIL 355 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccccee
Confidence 999998 5677888887765 2222 45578999999999999999999988788888888999999999999998888
Q ss_pred EEEeCCC
Q 013282 377 ATAEPAD 383 (446)
Q Consensus 377 ~~~~~dg 383 (446)
|+++...
T Consensus 356 atssGqr 362 (406)
T KOG2919|consen 356 ATSSGQR 362 (406)
T ss_pred eeccCce
Confidence 8877544
No 180
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.2e-17 Score=148.13 Aligned_cols=188 Identities=19% Similarity=0.203 Sum_probs=145.8
Q ss_pred EeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCC--
Q 013282 241 YGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH-- 317 (446)
Q Consensus 241 ~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-- 317 (446)
.++++|. .+++++.||++|+|+.++...+.... |...|.++.|+|||++|++.+.+ ..+||+.++|..+......
T Consensus 151 af~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k 228 (398)
T KOG0771|consen 151 AFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSK 228 (398)
T ss_pred EEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCccc
Confidence 3488988 69999999999999987766655554 88999999999999999999999 8999999999777766532
Q ss_pred CCceeEEEECCCC-----CEEEEEeCCCcEEEEEccCCCc----ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 013282 318 LDFSFASAWHPNG-----VTFATGNQDKTCRIWDLRNLSE----SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVY 388 (446)
Q Consensus 318 ~~~v~~~~~~p~~-----~~l~sgs~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iw 388 (446)
.-....+.|+.++ ..++.-..-+.|+.|++..... ...........|++++.+++|+++|.|+.+|.|-|+
T Consensus 229 ~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~ 308 (398)
T KOG0771|consen 229 DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIY 308 (398)
T ss_pred chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEE
Confidence 2345667888776 3333334456788887743222 222222223479999999999999999999999999
Q ss_pred EcCCCeeEeEee-ccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 389 DVKSGYEKEQEI-DFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 389 d~~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+..+-+.++..+ .|.+.|+++.|+|+.+++++.+.|.....+
T Consensus 309 ~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 309 DAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 998877665554 488899999999999999988877776543
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=2.4e-16 Score=135.80 Aligned_cols=225 Identities=14% Similarity=0.166 Sum_probs=162.5
Q ss_pred eEEEecCCeEEEEecCCCCce--EEEecCCCCCCCCCCCCCccccCccceEEEEEe---CCcEEEEeccCCcEEEEEcCC
Q 013282 144 DVYLMSHFSVIHWSSLTSSRS--QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDR 218 (446)
Q Consensus 144 ~v~~~~~~~i~~w~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~---~~~~l~tg~~dg~i~vw~~~~ 218 (446)
++..+++..+++|.+...... ....+..+.. .....+++++.| +.++|.+.+-|-+..||++.+
T Consensus 114 dlLATs~D~LRlWri~~ee~~~~~~~~L~~~kn-----------s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~ 182 (364)
T KOG0290|consen 114 DLLATSSDFLRLWRIGDEESRVELQSVLNNNKN-----------SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET 182 (364)
T ss_pred chhhcccCeEEEEeccCcCCceehhhhhccCcc-----------cccCCcccccccccCCcceeEeecccCeEEEEEEee
Confidence 455566778899987643221 1112222111 111237899999 889999999999999999988
Q ss_pred CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee----CCCCeeEEEECC-CCCEEEE
Q 013282 219 PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR----FPWPVNHSSQSP-DGKLLII 293 (446)
Q Consensus 219 ~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~sp-~~~~l~~ 293 (446)
+........+-.|...|..++| ...+..+|++.+.||+||+||++..+-...+. ...+..-++|++ |-+++|+
T Consensus 183 ~~~~~vkTQLIAHDKEV~DIaf--~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymAT 260 (364)
T KOG0290|consen 183 GVSGTVKTQLIAHDKEVYDIAF--LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMAT 260 (364)
T ss_pred ccccceeeEEEecCcceeEEEe--ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhh
Confidence 6321112233467888988888 77777799999999999999998755433332 245678888988 5566666
Q ss_pred E-ecCCcEEEEECC-CCceEEEecCCCCceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCc-----ceEEEecCCCceE
Q 013282 294 V-GDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSE-----SVAVLKGNLGAIR 365 (446)
Q Consensus 294 ~-~~d~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~~~-----~~~~~~~~~~~v~ 365 (446)
- -+...|.|.|++ ...++..|++|.+.|+.++|.| ....|+|++.|..+.|||+..... ++-.+. ..+.|+
T Consensus 261 f~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVN 339 (364)
T KOG0290|consen 261 FAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVN 339 (364)
T ss_pred hhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceee
Confidence 4 456789999999 4578999999999999999999 678999999999999999965333 223333 356899
Q ss_pred EEEEcc-CCCEEEEEeCC
Q 013282 366 SIRYTS-DGRYMATAEPA 382 (446)
Q Consensus 366 ~l~~s~-dg~~l~~~~~d 382 (446)
.|.|+| .+.+++.+...
T Consensus 340 qi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 340 QIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeecccCCCEEEEEecC
Confidence 999996 45678776543
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=5.1e-16 Score=152.01 Aligned_cols=212 Identities=15% Similarity=0.105 Sum_probs=147.9
Q ss_pred CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC--CcEEEEecCcceeeEeeeCCCCeeEEEEC
Q 013282 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNHSSQS 285 (446)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~s 285 (446)
+..|.+||.+.... +....+...+....| +|+|+.+++++..+ ..|++||+.+++.............++|+
T Consensus 183 ~~~i~i~d~dg~~~----~~lt~~~~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFNQ----FIVNRSSQPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCCc----eEeccCCCccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence 57899999865542 223345566777766 99998654444322 46999999887654433334445678999
Q ss_pred CCCCEEEEEe-cCCcEE--EEECCCCceEEEecCCCCceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCcceEEEecCC
Q 013282 286 PDGKLLIIVG-DNPDGL--LVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVAVLKGNL 361 (446)
Q Consensus 286 p~~~~l~~~~-~d~~i~--i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~d~~v~iwd~~~~~~~~~~~~~~~ 361 (446)
|||+.|++++ .+|.+. +||+.+++ +..+..+...+...+|+|+|+.|+.++ .++..+||++...+.....+ .+.
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC
Confidence 9999888765 577654 55766665 455666777788999999999877665 57889999875433333333 343
Q ss_pred CceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEE
Q 013282 362 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 432 (446)
Q Consensus 362 ~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~ 432 (446)
+ ..++|+|+|++|++++.++ +.+||+.++.... +... .....+.|+|+|++|+.++.++....|..
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3 4678999999999888765 6669999886443 2222 23456889999999999999888776543
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=1.4e-17 Score=156.89 Aligned_cols=176 Identities=19% Similarity=0.189 Sum_probs=142.7
Q ss_pred EeCCCcEEEEecCc-cee----eEeeeCCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCC-------ceEEEecCCCC
Q 013282 253 SNNDCGVRDFDMGK-YQL----SKHFRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTG-------KTIASLCGHLD 319 (446)
Q Consensus 253 ~s~dg~v~iwd~~~-~~~----~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~ 319 (446)
++..|.|-||++.. |++ +..+.....|+.+.|.| |...|+++++||.|+||.+..+ .+...+.+|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 35678999999965 332 23344566799999999 8889999999999999998744 34566888999
Q ss_pred ceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeE
Q 013282 320 FSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 320 ~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 398 (446)
.|+++.||| -...|++++.|-+|++||+++ .+....+.+|.+.|..++|||+|+.+|+.+.||.|++|+.+++.....
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhh-hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence 999999999 567899999999999999987 777888999999999999999999999999999999999998754332
Q ss_pred ee-cc-ccCeEEEEEcCCCCcEEEEEecCCcce
Q 013282 399 EI-DF-FGEISGISFSPDTESLFIGVWDRTYGS 429 (446)
Q Consensus 399 ~~-~~-~~~v~~~~~spdg~~l~~~~~D~~~~~ 429 (446)
.. +. ...-..|.|.-+|+++++.+.|.....
T Consensus 758 Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 758 EGKGPVGTRGARILWACDGRIVIVVGFDKSSER 790 (1012)
T ss_pred cCCCCccCcceeEEEEecCcEEEEecccccchh
Confidence 22 11 123456789899999888877766543
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=3.6e-16 Score=136.47 Aligned_cols=222 Identities=12% Similarity=0.105 Sum_probs=173.4
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec-Ccc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-GKY 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~-~~~ 267 (446)
+|+|.+| ++..+|.+..+..|.||.......-....++..|..+|+.+++ +|..+ .|++++.|..-++|.. ..+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW--ap~sn-rIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW--APKSN-RIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee--cCCCC-ceeEccCCCCccccccCCCC
Confidence 7999999 8889999999999999998877744456788899999999888 88887 5999999999999998 444
Q ss_pred eee---EeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceE----EEecCCCCceeEEEECCCCCEEEEEeCCC
Q 013282 268 QLS---KHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI----ASLCGHLDFSFASAWHPNGVTFATGNQDK 340 (446)
Q Consensus 268 ~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~p~~~~l~sgs~d~ 340 (446)
+-. ..++++...+++.|+|.++.||+|+....|.||-.+...-- +.-+.+...|.+++|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 433 23448999999999999999999999999999887643321 12234677899999999999999999999
Q ss_pred cEEEEEccCC-----------------CcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee-EeEeecc
Q 013282 341 TCRIWDLRNL-----------------SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE-KEQEIDF 402 (446)
Q Consensus 341 ~v~iwd~~~~-----------------~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~ 402 (446)
.+|++..--. +..+..+....+.|..+.|+|+|..|+-.+.|..|.+-|...... +......
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 9999975210 112333334567899999999999999999999999999876642 2222223
Q ss_pred ccCeEEEEEcCCC
Q 013282 403 FGEISGISFSPDT 415 (446)
Q Consensus 403 ~~~v~~~~~spdg 415 (446)
.-+..++.|-.+.
T Consensus 249 ~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 249 QLPLLSVSWISEN 261 (361)
T ss_pred cCCceeeEeecCC
Confidence 3566677776543
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=8.4e-16 Score=150.49 Aligned_cols=210 Identities=17% Similarity=0.127 Sum_probs=144.3
Q ss_pred EEEEEe--CCcEEEEeccC---CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEE--ec
Q 013282 192 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF--DM 264 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iw--d~ 264 (446)
+.+.+| +|+.|+.++.+ ..|++|++.++.... .....+ ....+. |+|+|+.++++.+.+|.+.|| |+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g---~~~~~~--wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG---HNGAPA--FSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC---ccCcee--ECCCCCEEEEEEecCCcEEEEEEEC
Confidence 555555 89999887654 369999997654321 121222 233444 499999666666678876555 66
Q ss_pred CcceeeEeeeCCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCC-CceEEEecCCCCceeEEEECCCCCEEEEEeCCCcE
Q 013282 265 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342 (446)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v 342 (446)
.+++......+...+....|+|||+.|+.++ .++...||++.. +.....+ .+.. ...+|+|+|++|+.++.++ +
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i 355 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-V 355 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-E
Confidence 6666554444666788999999999887665 567778887643 2223333 3443 4678999999999888765 5
Q ss_pred EEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEc--CCCeeEeEeeccccCeEEEEEcCC
Q 013282 343 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV--KSGYEKEQEIDFFGEISGISFSPD 414 (446)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~spd 414 (446)
.+||+.. +... .+... ....++.|+|+|++|++++.++.+.+|.+ .+|..+..+..|.+.+..++|+|-
T Consensus 356 ~~~Dl~~-g~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 356 VKQDLTS-GSTE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEECCC-CCeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 5699965 4332 22222 13457889999999999999998888875 357778888888888999999984
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=8.9e-15 Score=123.14 Aligned_cols=225 Identities=16% Similarity=0.153 Sum_probs=155.6
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCe-eeEE----EEee-----cCCCceeeEEEEeCCCCCeEEEEEeCCCcEE
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGV-SFCS----RTTY-----DDNAITNAVEIYGSPSGAVHFTASNNDCGVR 260 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~-~~~~----~~~~-----~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~ 260 (446)
+|+.+++...+|++|+. |.|+-|.++.... ..+. .... -.-..|+++.+ .|..+.+|++ +.|+.++
T Consensus 64 piy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enSi~~A-gGD~~~y 139 (325)
T KOG0649|consen 64 PIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENSILFA-GGDGVIY 139 (325)
T ss_pred CeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe--ccCCCcEEEe-cCCeEEE
Confidence 79999998888888886 9999998864332 1110 0011 11234677777 7776644444 4999999
Q ss_pred EEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecC---------C-CCceeEEEECCC
Q 013282 261 DFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG---------H-LDFSFASAWHPN 329 (446)
Q Consensus 261 iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~-~~~v~~~~~~p~ 329 (446)
.||+++|+..+.++ |...|.++........+++|+.||++++||+++++.+..+.. | ..+|.+++- +
T Consensus 140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ 217 (325)
T KOG0649|consen 140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--N 217 (325)
T ss_pred EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--c
Confidence 99999999999999 999999999866666799999999999999999999888753 2 234666665 4
Q ss_pred CCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEE
Q 013282 330 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGI 409 (446)
Q Consensus 330 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 409 (446)
..+|++|+ ...+.+|.+|. .++..++.- .+++..+.|-.+ .+++++..+.|.-|-+. |..............+.
T Consensus 218 edWlvCGg-Gp~lslwhLrs-se~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~ 291 (325)
T KOG0649|consen 218 EDWLVCGG-GPKLSLWHLRS-SESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSA 291 (325)
T ss_pred CceEEecC-CCceeEEeccC-CCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeee
Confidence 55777665 55799999987 677777653 567888888655 57777777789999864 44433333322234444
Q ss_pred EEcCC-CCcEEEEEecCCc
Q 013282 410 SFSPD-TESLFIGVWDRTY 427 (446)
Q Consensus 410 ~~spd-g~~l~~~~~D~~~ 427 (446)
.|+.. -++|-+++...++
T Consensus 292 s~~~~p~k~~s~ag~s~~~ 310 (325)
T KOG0649|consen 292 SWQTSPIKFISIAGFSNKL 310 (325)
T ss_pred cccCCceEEEEecccceee
Confidence 45433 2344444444333
No 187
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.9e-16 Score=139.04 Aligned_cols=222 Identities=15% Similarity=0.122 Sum_probs=170.0
Q ss_pred ceEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC--CcEEEEecCcc
Q 013282 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKY 267 (446)
Q Consensus 190 ~~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d--g~v~iwd~~~~ 267 (446)
..|..++.-...|++|-.+|.+.+|....+.......+.-.....+..+.- ++....++++|+.. ..+.+||+++.
T Consensus 106 ~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~--~~~~p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 106 KSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQ--TDTDPYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred ccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeecc--CCCCCceEecCchhcccceeeeecccc
Confidence 367777776678889999999999998744311101111111133444444 56666677889988 88999999987
Q ss_pred eeeEeee----------CCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCC-ceEEEecCCCCceeEEEECCCCCEEE
Q 013282 268 QLSKHFR----------FPWPVNHSSQSPD--GKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFA 334 (446)
Q Consensus 268 ~~~~~~~----------~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~ 334 (446)
+.+..-+ -+-.++.+.|-|. ...||+++.-+.+++||.+.+ +++..+.--..+++++...|.|++++
T Consensus 184 ~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 184 KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence 6554433 2334678888886 789999999999999999854 67888887788999999999999999
Q ss_pred EEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCC
Q 013282 335 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 414 (446)
Q Consensus 335 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spd 414 (446)
+|..-+.+..+|+|........+.+..+.|++|..+|.+++||+++.|..|||+|+++.+.+.... ....+++|.+.++
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 999999999999987444445588999999999999999999999999999999999865554433 4456777877664
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=7.7e-17 Score=144.70 Aligned_cols=189 Identities=20% Similarity=0.300 Sum_probs=149.3
Q ss_pred cCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee---------eEeee-CCCCeeEEEECCCCCEEEEEecCCc
Q 013282 230 DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL---------SKHFR-FPWPVNHSSQSPDGKLLIIVGDNPD 299 (446)
Q Consensus 230 ~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~---------~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~ 299 (446)
+...++..+.| .++....+++|+.|..|++|-+..... ...+. |...|+++.|+|+|.+|++|+++|.
T Consensus 11 H~~~pv~s~df--q~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 11 HDHEPVYSVDF--QKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred cCCCceEEEEe--ccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 34456777777 666655799999999999998765322 12233 8899999999999999999999999
Q ss_pred EEEEECC--------C--------CceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCc
Q 013282 300 GLLVDSM--------T--------GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 363 (446)
Q Consensus 300 i~i~d~~--------~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~ 363 (446)
|.+|-.. + ....+.+.+|...|+.++|+|++.++++|+.|.++++||+.. +.....+..|..-
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHY 167 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccc
Confidence 9999765 2 123455678999999999999999999999999999999976 8899999999999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee--------c-----------cc----cCeEEEEEcCCCCcEEE
Q 013282 364 IRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI--------D-----------FF----GEISGISFSPDTESLFI 420 (446)
Q Consensus 364 v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~-----------~~----~~v~~~~~spdg~~l~~ 420 (446)
|..++|.|-++++++-+.|...+++.+.......... . |. .-...++|+|+|.+|++
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 9999999999999999988877777765433221111 0 11 12446889999999886
Q ss_pred E
Q 013282 421 G 421 (446)
Q Consensus 421 ~ 421 (446)
.
T Consensus 248 P 248 (434)
T KOG1009|consen 248 P 248 (434)
T ss_pred c
Confidence 5
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.5e-16 Score=138.07 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=176.4
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCe----eeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV----SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~ 264 (446)
.|.++.| ++++||+||.|-.++||++...-. ......-.+|.+.|-++.| ... ..++++|..+++|...|+
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F--~~~-N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF--DLE-NRFLYSGERWGTVIKHDI 134 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE--ccC-CeeEecCCCcceeEeeec
Confidence 6888888 899999999999999999863211 1111223345577777777 444 447999999999999999
Q ss_pred CcceeeEeeeCCC---CeeEEEECCCCCEEEEEecCCcEEEEECCCCc-eEE--EecCCCCceeEEEECC-CCCEEEEEe
Q 013282 265 GKYQLSKHFRFPW---PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-TIA--SLCGHLDFSFASAWHP-NGVTFATGN 337 (446)
Q Consensus 265 ~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~--~~~~~~~~v~~~~~~p-~~~~l~sgs 337 (446)
++.+.+..+.+.. .|..+..+|..+.|++.+.++.|.+||.+..+ .+. .+........++.|+| ...+|++.+
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 9999998888654 89999999999999999999999999998654 222 2223445677899999 567888999
Q ss_pred CCCcEEEEEccCCCcceEE-----------------------------------------------Ee-cCC-------C
Q 013282 338 QDKTCRIWDLRNLSESVAV-----------------------------------------------LK-GNL-------G 362 (446)
Q Consensus 338 ~d~~v~iwd~~~~~~~~~~-----------------------------------------------~~-~~~-------~ 362 (446)
..+-+-+||+|....++.. ++ .|. .
T Consensus 215 ~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~ 294 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIK 294 (609)
T ss_pred ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeee
Confidence 8899999999764322211 00 010 1
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEcCCC-----------------------eeEeEeeccccCeEEEEEcCCCCcEE
Q 013282 363 AIRSIRYTSDGRYMATAEPADFVHVYDVKSG-----------------------YEKEQEIDFFGEISGISFSPDTESLF 419 (446)
Q Consensus 363 ~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~spdg~~l~ 419 (446)
.+.+++|.-| +-+++|+.+-.|++|.+... ..+..+.+|..-++.+.|+|...+|+
T Consensus 295 T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~ 373 (609)
T KOG4227|consen 295 TIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLV 373 (609)
T ss_pred eeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEe
Confidence 2344555444 34788888888999987521 12445678999999999999998899
Q ss_pred EEEecCCcceEEEEe
Q 013282 420 IGVWDRTYGSLLEYG 434 (446)
Q Consensus 420 ~~~~D~~~~~~l~~~ 434 (446)
+.+....++.|..+.
T Consensus 374 SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 374 SSGVENSFKLWSDHR 388 (609)
T ss_pred ccchhhheecccccc
Confidence 888888888775443
No 190
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=4.4e-16 Score=136.30 Aligned_cols=230 Identities=15% Similarity=0.127 Sum_probs=161.5
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEee--cCCCceeeEEEEeCCC-CCeEEEEEeCCCcEEEEecCcceeeEeee
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY--DDNAITNAVEIYGSPS-GAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~--~~~~~v~~i~~~~s~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (446)
..+.+++.|.+ .+.+|...........+... .+...-..+++..... +..++++++.-|.|+|.|+.++++...+.
T Consensus 54 e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ 132 (385)
T KOG1034|consen 54 EPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR 132 (385)
T ss_pred CCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee
Confidence 34667777654 47778776555222222222 2333333444433333 56689999999999999999999998888
Q ss_pred -CCCCeeEEEECCC-CCEEEEEecCCcEEEEECCCCceEEEec---CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 013282 275 -FPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 349 (446)
Q Consensus 275 -~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~ 349 (446)
|...|+.+.++|+ .+++++++.|..|++|++++..++..+. +|.+.|.++.|+++|.+|++++.|.++++|++..
T Consensus 133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 9999999999994 5688999999999999999999999875 6999999999999999999999999999999952
Q ss_pred CC--c---ce----------------E------EEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEc-CCCee------
Q 013282 350 LS--E---SV----------------A------VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV-KSGYE------ 395 (446)
Q Consensus 350 ~~--~---~~----------------~------~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~-~~~~~------ 395 (446)
.. . .. . +-.-|...|-|+.|- |.++++=+-++.|..|-. +-++.
T Consensus 213 ~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp 290 (385)
T KOG1034|consen 213 KEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKP 290 (385)
T ss_pred hHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCC
Confidence 10 0 00 0 112355666677765 578898888999999987 21111
Q ss_pred -------EeEeeccccCeEE--EEEcCCCCcEEEEEecCCcceE
Q 013282 396 -------KEQEIDFFGEISG--ISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 396 -------~~~~~~~~~~v~~--~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+..+.-....|.- .+|.|-++.||.|...|++-.|
T Consensus 291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 1111112233433 4566778888888776665433
No 191
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=4.1e-17 Score=148.70 Aligned_cols=225 Identities=18% Similarity=0.165 Sum_probs=181.2
Q ss_pred EEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee
Q 013282 193 STLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (446)
Q Consensus 193 ~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (446)
+.+.+ +|+.|+.||..|.|..+|+.+........ -...|..+.| -.+.. +|+++ ....++|||- .|..+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~--LHneq-~~AVA-QK~y~yvYD~-~GtEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTF--LHNEQ-FFAVA-QKKYVYVYDN-NGTEL 203 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhh--hcchH-HHHhh-hhceEEEecC-CCcEE
Confidence 34455 99999999999999999998876543332 2334566666 44443 45444 6788999995 56666
Q ss_pred EeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 013282 271 KHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 350 (446)
Q Consensus 271 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~ 350 (446)
+.++....|..+.|-|.--+|++++..|.+..-|+.+|+.+..+..-.+.+..++-+|-...+-+|...|+|.+|....
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s- 282 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS- 282 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-
Confidence 7777667899999999988999999999999999999999999988888999999999888999999999999999954
Q ss_pred CcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 351 SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 351 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
..++..+-.|.++|++|++.++|+|+|+++.|..++|||+++.+.+..+.. ..+...++||..|- +++++...+-.|
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl--LA~~~G~~v~iw 359 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL--LALSYGDHVQIW 359 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc--eeeecCCeeeee
Confidence 788888889999999999999999999999999999999999887766655 45677888987653 333333333333
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.3e-14 Score=129.23 Aligned_cols=191 Identities=15% Similarity=0.258 Sum_probs=145.8
Q ss_pred eEEEEEeCCcEEEEeccCC--cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAVKDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|.-+-|...++|..+.+. .+++.++..... .|...+. ..|-++.+ +. + .|+++-. ..|+|||+.+.+
T Consensus 48 ~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~-ICe~~fp---t~IL~Vrm--Nr--~-RLvV~Le-e~IyIydI~~Mk 117 (391)
T KOG2110|consen 48 SIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT-ICEIFFP---TSILAVRM--NR--K-RLVVCLE-ESIYIYDIKDMK 117 (391)
T ss_pred EEEEeecccceeEEEecCCCceEEEEEcccCce-EEEEecC---CceEEEEE--cc--c-eEEEEEc-ccEEEEecccce
Confidence 4666666777777666544 488888765433 3433332 24666766 32 2 4665534 449999999999
Q ss_pred eeEeee----CCCCeeEEEECCCCCEEEEE--ecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCc-
Q 013282 269 LSKHFR----FPWPVNHSSQSPDGKLLIIV--GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT- 341 (446)
Q Consensus 269 ~~~~~~----~~~~v~~~~~sp~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~- 341 (446)
+++++. ++..+.++++++.+.+++.= ...|.|+|||+.+-+++..+..|.+.+-+++|+|+|.+|||+|..|+
T Consensus 118 lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV 197 (391)
T KOG2110|consen 118 LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV 197 (391)
T ss_pred eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceE
Confidence 999887 23345566666667788764 35799999999999999999999999999999999999999999886
Q ss_pred EEEEEccCCCcceEEEecC--CCceEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 013282 342 CRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~--~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~ 392 (446)
||++.+.+ ++.+..|.-. ...|.+|+|+|++++|++.+..++|+||.+..
T Consensus 198 IRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 198 IRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 79999966 7777777532 23688999999999999999999999998764
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=4.8e-14 Score=133.78 Aligned_cols=217 Identities=14% Similarity=0.146 Sum_probs=145.1
Q ss_pred EEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC-ccee--eEeeeCCCC
Q 013282 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQL--SKHFRFPWP 278 (446)
Q Consensus 202 l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~-~~~~--~~~~~~~~~ 278 (446)
+++...++.|.+|++.+.+.......... .+....+.+ +|+++.+++++..++.|.+|++. +++. +........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 44557789999999975443323333332 234455666 99998655555678999999986 3433 333334456
Q ss_pred eeEEEECCCCCEEEEEe-cCCcEEEEECCC-Cc---eEEEecCCCCceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCc
Q 013282 279 VNHSSQSPDGKLLIIVG-DNPDGLLVDSMT-GK---TIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSE 352 (446)
Q Consensus 279 v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~-~~---~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~d~~v~iwd~~~~~~ 352 (446)
...++++|++++|++++ .++.|.+|++.+ +. .+..+. +.....+++++|+|+++++++ .++.|.+||+...+.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 77899999999888776 488999999863 32 233333 233457789999999886655 469999999965332
Q ss_pred ce------EEEecCCCceEEEEEccCCCEEEEEeC-CCeEEEEEcCC--Ce--eEeEeecc------ccCeEEEEEcCCC
Q 013282 353 SV------AVLKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKS--GY--EKEQEIDF------FGEISGISFSPDT 415 (446)
Q Consensus 353 ~~------~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~------~~~v~~~~~spdg 415 (446)
.. ..... ....+.++|+|+|++|+++.. ++.|.+|++.. +. ....+..+ ......+.|+|+|
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 11112 234678999999999988876 89999999973 32 22222211 1123468999999
Q ss_pred CcEEEEEe
Q 013282 416 ESLFIGVW 423 (446)
Q Consensus 416 ~~l~~~~~ 423 (446)
++|+++..
T Consensus 240 ~~lyv~~~ 247 (330)
T PRK11028 240 RHLYACDR 247 (330)
T ss_pred CEEEEecC
Confidence 99999854
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.9e-16 Score=147.85 Aligned_cols=235 Identities=13% Similarity=0.110 Sum_probs=172.6
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCC-----CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDR-----PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd 263 (446)
.|.++++ ....|++++.+|+|.+|++.. ........++.+|.++|-++.+ .+++. .+++|+.||+|+.|+
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v--~~n~~-~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV--PSNGE-HCYSGGIDGTIRCWN 372 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe--cCCce-EEEeeccCceeeeec
Confidence 3555555 667899999999999999932 1123345678899999999998 77776 799999999999997
Q ss_pred cCcc----------eeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecC--CCCceeEEEECCCC
Q 013282 264 MGKY----------QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNG 330 (446)
Q Consensus 264 ~~~~----------~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~p~~ 330 (446)
+... .....+. |...|+.+++|+....|++++.||++++|+.....+ .++.. ..+.-.++.+-...
T Consensus 373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSR 451 (577)
T ss_pred cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccch
Confidence 6521 1222333 889999999999999999999999999999876665 33432 22333455554332
Q ss_pred -CEEEEEeCCCcEEEEEccCCCcceEEEecC-------CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeecc
Q 013282 331 -VTFATGNQDKTCRIWDLRNLSESVAVLKGN-------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 402 (446)
Q Consensus 331 -~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~-------~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 402 (446)
.++++...-+.-.++++.. ...+..+... ...+..+.++|.+.+.+++..|+.|+++|..++..++....|
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~ 530 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH 530 (577)
T ss_pred hHhhhhhcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec
Confidence 2222222233333334322 3333333211 134778889999999999999999999999999999999999
Q ss_pred ccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 403 FGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 403 ~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
...++++++.|+|.+|++++.|+.++-+
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLW 558 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehh
Confidence 9999999999999999999999987644
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.2e-16 Score=140.95 Aligned_cols=195 Identities=17% Similarity=0.155 Sum_probs=146.2
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (446)
.+.+...+|..|++|+.||.+|||++...... .....|.+.|..++| +|+|+ +|++-+.| ..+||++.++..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---l~e~~~~~eV~DL~F--S~dgk-~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---LEEIAHHAEVKDLDF--SPDGK-FLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh---hhhHhhcCcccccee--CCCCc-EEEEecCC-ceEEEEeccCchh
Confidence 34444448999999999999999998665432 344567788999998 99998 68888888 9999999998665
Q ss_pred Eeee---CCCCeeEEEECCCC---CEE--EEEecCCcEEEEECCCCce---E--EEecCCCCceeEEEECCCCCEEEEEe
Q 013282 271 KHFR---FPWPVNHSSQSPDG---KLL--IIVGDNPDGLLVDSMTGKT---I--ASLCGHLDFSFASAWHPNGVTFATGN 337 (446)
Q Consensus 271 ~~~~---~~~~v~~~~~sp~~---~~l--~~~~~d~~i~i~d~~~~~~---~--~~~~~~~~~v~~~~~~p~~~~l~sgs 337 (446)
.... .+.....+.|+.++ .++ +.....+.|..|++...+. + .+...-...|.+++.+++|+++|.|+
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 5544 34556778888766 333 3334567777777653221 1 11111234689999999999999999
Q ss_pred CCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 013282 338 QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 338 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~ 392 (446)
.||.|-|++..........-+.|.+.|+.+.|+|+.+++++.+.+..+.|.-+.-
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999764333344457999999999999999999999998888887654
No 196
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.69 E-value=5.8e-15 Score=127.65 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=115.0
Q ss_pred eeeEEEEeCCCCCeEEEEEeC---------CCcEEEEecC-cceeeEeee--CCCCeeEEEECCCCCEEEEEe--cCCcE
Q 013282 235 TNAVEIYGSPSGAVHFTASNN---------DCGVRDFDMG-KYQLSKHFR--FPWPVNHSSQSPDGKLLIIVG--DNPDG 300 (446)
Q Consensus 235 v~~i~~~~s~~~~~~l~s~s~---------dg~v~iwd~~-~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~--~d~~i 300 (446)
+..+.+.|+|.|..+++.... -+...+|-++ .......+. ..++|.+++|+|+|+.|++.. ..+.|
T Consensus 6 ~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 6 VDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred cceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 456778889999876666552 1335556552 223344443 456799999999999886653 56799
Q ss_pred EEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC---CCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEE
Q 013282 301 LLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 377 (446)
Q Consensus 301 ~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 377 (446)
.+||++ ++.+..+. ...+..+.|+|+|++|++|+. .|.|.+||+++ .+.+.... | ..++.++|+|+|++|+
T Consensus 86 ~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDGRYLA 159 (194)
T ss_pred EEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCCCEEE
Confidence 999997 66777764 467789999999999999875 46799999975 56665554 2 3478999999999999
Q ss_pred EEeC------CCeEEEEEcCCCeeEeE
Q 013282 378 TAEP------ADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 378 ~~~~------dg~i~iwd~~~~~~~~~ 398 (446)
++.. |+.++||+.. |+.+..
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEe
Confidence 8874 6779999975 655543
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=9e-16 Score=135.09 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=142.0
Q ss_pred eEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECC--CCCEEEEEecCCcEEEEECCCCceEEE--ecCCC-Cce
Q 013282 248 VHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIAS--LCGHL-DFS 321 (446)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~-~~v 321 (446)
..++++-..|+|++||..+++.+..|+ ++..++.++|.. ....+.+|+.||+|++||+|+...... ..+++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 368888889999999999999999999 788889999876 566789999999999999997655444 44555 456
Q ss_pred eEEEECCCCCEEEEEeC----CCcEEEEEccCCCcceEEE-ecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCCe-
Q 013282 322 FASAWHPNGVTFATGNQ----DKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY- 394 (446)
Q Consensus 322 ~~~~~~p~~~~l~sgs~----d~~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~- 394 (446)
.+++.+-.++++++|+. +-.|.+||+|+..+++..+ ..|...|++|+|+|.. ..|++|+.||.|.|||++...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777667888988864 6689999999866655554 5799999999999965 689999999999999998653
Q ss_pred --eEeEeeccccCeEEEEEcCCC-CcEEEEEecCCc
Q 013282 395 --EKEQEIDFFGEISGISFSPDT-ESLFIGVWDRTY 427 (446)
Q Consensus 395 --~~~~~~~~~~~v~~~~~spdg-~~l~~~~~D~~~ 427 (446)
.+.....+...|..+.|...+ +.|.+-+...+.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf 236 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETF 236 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCce
Confidence 344555677889999999887 235544444443
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=4.2e-15 Score=145.26 Aligned_cols=233 Identities=18% Similarity=0.182 Sum_probs=163.2
Q ss_pred ecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe----CCcEEEEeccCCcEEEEEcCCCCeee
Q 013282 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV----KDKLLVAGGFQGELICKHLDRPGVSF 223 (446)
Q Consensus 148 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~----~~~~l~tg~~dg~i~vw~~~~~~~~~ 223 (446)
+.+|.|.+||...+.......++ ...+-+..+|+.+.| .+.-+++++.||.|..|+++.-....
T Consensus 262 ~y~GqV~lWD~~~~~~~~~s~ls------------~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~ 329 (555)
T KOG1587|consen 262 CYNGQVVLWDLRKGSDTPPSGLS------------ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV 329 (555)
T ss_pred ccCceEEEEEccCCCCCCCcccc------------cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence 44688899998776542211111 011112236777777 23558999999999999876433211
Q ss_pred EEE---Eee----cCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe---cCcce-----eeEeee-CCCCeeEEEECCC
Q 013282 224 CSR---TTY----DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD---MGKYQ-----LSKHFR-FPWPVNHSSQSPD 287 (446)
Q Consensus 224 ~~~---~~~----~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd---~~~~~-----~~~~~~-~~~~v~~~~~sp~ 287 (446)
... ... .....+.+..+.|.+.....|+.|+..|.|.-=. ..... ....+. |.++|.++.++|-
T Consensus 330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF 409 (555)
T KOG1587|consen 330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF 409 (555)
T ss_pred hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence 111 111 1122233333444788777899999999988733 22221 222333 8999999999997
Q ss_pred CCEEEEEecCCcEEEEECC-CCceEEEecCCCCceeEEEECC-CCCEEEEEeCCCcEEEEEccCC-CcceEEEecCCCce
Q 013282 288 GKLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNL-SESVAVLKGNLGAI 364 (446)
Q Consensus 288 ~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~-~~~~~~~~~~~~~v 364 (446)
+..++..+.|.+++||... ...++..+..+.+.|++++||| ....|+++..+|.+.|||+... ..++...+.+....
T Consensus 410 ~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l 489 (555)
T KOG1587|consen 410 YPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPAL 489 (555)
T ss_pred ccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccc
Confidence 7666555559999999988 7778888888899999999999 4568888889999999999642 34666666566778
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 013282 365 RSIRYTSDGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 365 ~~l~~s~dg~~l~~~~~dg~i~iwd~~~ 392 (446)
+.+.|++.|+.|++|...|.+++|++..
T Consensus 490 ~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 490 TRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 8899999999999999999999999864
No 199
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3e-14 Score=124.54 Aligned_cols=230 Identities=14% Similarity=0.072 Sum_probs=165.5
Q ss_pred EEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC------CcEEEEe
Q 013282 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDFD 263 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d------g~v~iwd 263 (446)
..+++| |...+++|...| .+||+.+.-+......... .+ ...+.+.|- . +.+.++|+.. ..|.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~--~G-~~~veMLfR-~-N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFID--GG-FKIVEMLFR-S-NYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcccc--Cc-hhhhhHhhh-h-ceEEEecCCCCCCCCCceEEEEe
Confidence 445777 777888888777 8999987543222111111 11 333333222 2 2345555444 4699999
Q ss_pred cCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECC-CCceEEEecCC--CCceeEEEECCCCCEEEEEe-CC
Q 013282 264 MGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIASLCGH--LDFSFASAWHPNGVTFATGN-QD 339 (446)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~--~~~v~~~~~~p~~~~l~sgs-~d 339 (446)
=...+++.++....+|.++.++++ .+++.-. +.|++|... +.+.++.+..- ...+.+++-+.+..+||.-+ .-
T Consensus 82 D~k~~~i~el~f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 82 DLKERCIIELSFNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cccCcEEEEEEeccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 888899999999999999999864 5665554 589999987 66777777633 23344443333445566544 47
Q ss_pred CcEEEEEccCCCc-ceEEEecCCCceEEEEEccCCCEEEEEeCCCe-EEEEEcCCCeeEeEeecc--ccCeEEEEEcCCC
Q 013282 340 KTCRIWDLRNLSE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEIDF--FGEISGISFSPDT 415 (446)
Q Consensus 340 ~~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~spdg 415 (446)
|.|+|-|+..... +...+.+|...|.+++.+-+|..||++|..|+ |||||..+|..+..+... ...|.+|+|||++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 8999999965333 35788999999999999999999999999997 899999999998887743 3579999999999
Q ss_pred CcEEEEEecCCcceE
Q 013282 416 ESLFIGVWDRTYGSL 430 (446)
Q Consensus 416 ~~l~~~~~D~~~~~~ 430 (446)
.+|++++.-|++-.+
T Consensus 239 s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIF 253 (346)
T ss_pred cEEEEEcCCCeEEEE
Confidence 999999888877544
No 200
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.2e-14 Score=140.28 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=140.5
Q ss_pred CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC--CcEEEEecCcceeeEeeeCCCCeeEEEECC
Q 013282 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNHSSQSP 286 (446)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 286 (446)
..|.++|....... . ...+...+....| +|+|+.++++...+ ..|++||+.+++.......+..+.+.+|+|
T Consensus 176 ~~L~~~D~dG~~~~---~-l~~~~~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQNAQ---S-ALSSPEPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCCCce---E-eccCCCCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC
Confidence 34666665332211 1 2234455666655 99998655544333 359999999887665444556677899999
Q ss_pred CCCEEEE-EecCCcEEEE--ECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCcceEEEecCCC
Q 013282 287 DGKLLII-VGDNPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLG 362 (446)
Q Consensus 287 ~~~~l~~-~~~d~~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~~v~iwd~~~~~~~~~~~~~~~~ 362 (446)
||+.|+. .+.++...|| |+.++. ...+..+.......+|+|+|+.|+..+. ++...||.+...+.....+.....
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~ 328 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS 328 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC
Confidence 9998864 5667665555 555444 5556656666677899999998887664 567777766432333333332233
Q ss_pred ceEEEEEccCCCEEEEEeCCC---eEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 363 AIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 363 ~v~~l~~s~dg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
.....+|+|+|++|+..+.++ .|.+||+.++... .+... .....+.|+|+|+.|+.++.++....+.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLA 398 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEE
Confidence 345689999999998877654 6999999887643 33322 3346789999999999888766544443
No 201
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.68 E-value=1.7e-14 Score=123.16 Aligned_cols=281 Identities=19% Similarity=0.115 Sum_probs=184.9
Q ss_pred ccceeeccceeeeEEecccCeEEE-ecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEE
Q 013282 124 VKSTILHFQLRNLVWATSKHDVYL-MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLL 202 (446)
Q Consensus 124 v~~~~~h~~~~~l~~~~~~~~v~~-~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l 202 (446)
...+.-|+|++.++.-......+- ...-++.+|+..+.....+--..|-. . .-.++.-+..+|
T Consensus 24 f~v~snhwqlk~~is~~~~s~~~ni~~t~sv~i~~~y~N~~~iv~~y~g~~----F------------~p~s~~~kc~~l 87 (344)
T KOG4532|consen 24 FPVNSNHWQLKANISLPPPSQPINISKTISVPINSHYSNPKGIVEFYTGMT----F------------TPGSFINKCVTL 87 (344)
T ss_pred CccchhhhhhhhcccCCCCCccccccceeeeEeccccCCchhhEEeeeccc----c------------cchHhhccccEE
Confidence 344567899988875543332211 12345777877665311111011110 0 011112266789
Q ss_pred EEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeE
Q 013282 203 VAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNH 281 (446)
Q Consensus 203 ~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~ 281 (446)
|.||..|...+|...+..... .....+...|..+.- -.+.+.-+..+++|.+++++++..+....... ..-.+++
T Consensus 88 a~gG~~g~fd~~~~~tn~~h~--~~cd~snn~v~~~~r--~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 88 ADGGASGQFDLFACNTNDGHL--YQCDVSNNDVTLVKR--YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred EeccccceeeeecccCcccce--eeecccccchhhhhh--hcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 999999999999998665432 222222222221111 01122246677899999999987554433332 1134889
Q ss_pred EEECCCCCEEEEEecCCcEEEEECCC-Cce-EE-EecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEE-
Q 013282 282 SSQSPDGKLLIIVGDNPDGLLVDSMT-GKT-IA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVL- 357 (446)
Q Consensus 282 ~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~-~~-~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~- 357 (446)
++++|+++++++.++...|..|.+.. +.. +. .+...++.-++..|+.....+|++++||++.|||+|..+.+....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 99999999999999999999998863 332 33 234456677899999999999999999999999999877766544
Q ss_pred ---ecCCCceEEEEEccCC--CEEEEEeCCCeEEEEEcCCCeeEeEeec-------cc-cCeEEEEEcCCCCcEEEEEec
Q 013282 358 ---KGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYEKEQEID-------FF-GEISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 358 ---~~~~~~v~~l~~s~dg--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~-~~v~~~~~spdg~~l~~~~~D 424 (446)
..|.++++.+.|++-| .+|.....-+.+++-|++++...+.+.. |. ..|.+-.|+.++..+.+...+
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 3488999999999977 3677777888999999999876554432 22 237788888888877776554
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=140.56 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=135.1
Q ss_pred eEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe---CCcEEEEeccCCcEEEEEcCCCC
Q 013282 144 DVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPG 220 (446)
Q Consensus 144 ~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~ 220 (446)
.+....-+.+.+.+........+++....+ ....|+|+.| +...++++-.+|.+++++.....
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i--------------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~ 253 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLI--------------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC 253 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccc--------------cccceEEEEEEeCCCceEEEEEecCceEEeeccccc
Confidence 333444455566665554444444444332 2247999999 77788888899999999873221
Q ss_pred eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCc
Q 013282 221 VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPD 299 (446)
Q Consensus 221 ~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~ 299 (446)
.. +...+...+.+.. |.....- ...+..++..+. ....|+..+|+|||++||+.+.||.
T Consensus 254 ~~-------------t~p~~~~~k~~~~-f~i~t~k------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 254 GA-------------TAPSYQALKDGDQ-FAILTSK------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred cC-------------CCCcccccCCCCe-eEEeeee------ccccCCccceeEeccccccceeEcCCCceEEEEecCce
Confidence 11 1111111233332 2221100 011112333333 4458999999999999999999999
Q ss_pred EEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEcc
Q 013282 300 GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS 371 (446)
Q Consensus 300 i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~ 371 (446)
++|+|..+.+++..++.--+...|++|+|||++|++|+.|.-|.||.+.. ++.+..-.+|..+|+.++|.|
T Consensus 314 LRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 314 LRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecc
Confidence 99999999988888887788999999999999999999999999999965 888999999999999999983
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=1.2e-16 Score=154.97 Aligned_cols=233 Identities=16% Similarity=0.184 Sum_probs=172.5
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|+|..+ .|.++++|+.|..++||...+. .|.....+|.+.++.+++ +.++ .+++++|.|..|++|-+..+.
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlav--s~~n-~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAV--SSNN-TMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhcc--chhh-hhhhhcccCceEEEEecCCCc
Confidence 5899988 7999999999999999997766 556777899999999987 5554 479999999999999999999
Q ss_pred eeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC--------------ceEEEe----------cC------C
Q 013282 269 LSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG--------------KTIASL----------CG------H 317 (446)
Q Consensus 269 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~----------~~------~ 317 (446)
++..+. |.+.|++++|+|-. +.+.||++++||.+-. ..+..+ .+ .
T Consensus 266 pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 266 PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 999887 99999999999943 7789999999998711 011111 00 0
Q ss_pred CCceeEEEECCCCCEEEEEe-----------CCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCC-EEEEEeCCCeE
Q 013282 318 LDFSFASAWHPNGVTFATGN-----------QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAEPADFV 385 (446)
Q Consensus 318 ~~~v~~~~~~p~~~~l~sgs-----------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~~dg~i 385 (446)
.-....++|..++-.+++++ .+-.+.+|++.. +...+.+.+|...+..+.++|-.. ...+++.||..
T Consensus 342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc-chhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 00122334444333344433 344577888854 777888889999999999999664 55688999999
Q ss_pred EEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEEEeccc
Q 013282 386 HVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 437 (446)
Q Consensus 386 ~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~~~~~ 437 (446)
.|||+-.|.+++......+.+...+||++|..++..- ..|.++.+..+.
T Consensus 421 ~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd---~hgql~i~g~gq 469 (1113)
T KOG0644|consen 421 IIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD---DHGQLYILGTGQ 469 (1113)
T ss_pred EeeecccCCcceeeecccceeeccccCCCCceEecCC---CCCceEEeccCC
Confidence 9999999877666554466778889999998776432 234444444433
No 204
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.2e-14 Score=136.59 Aligned_cols=211 Identities=15% Similarity=0.096 Sum_probs=145.6
Q ss_pred EEEEEe--CCcEEEEecc---CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC--cEEEEec
Q 013282 192 VSTLAV--KDKLLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDM 264 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg--~v~iwd~ 264 (446)
+.+.+| +|+.|+..+. +..|.+|++.++... .+. ...+.+....| +|+|+.++++.+.+| .|++||+
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---~l~-~~~~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QVA-SFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---Ecc-CCCCCcCCeEE--CCCCCEEEEEEcCCCCcEEEEEEC
Confidence 555555 8888886542 357899998765432 111 12223344444 999997666666565 4889999
Q ss_pred CcceeeEeeeCCCCeeEEEECCCCCEEEEEecC-C--cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCC--
Q 013282 265 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN-P--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-- 339 (446)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-- 339 (446)
.+++..........+....|+|+|+.|+.++.. + .|+++|+.+++. ..+..+.......+|+|+|++|+..+.+
T Consensus 275 ~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 275 ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCC
Confidence 988776655555678889999999999877654 3 455667776654 3444344456678999999999887653
Q ss_pred -CcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCe---EEEEEcCCCeeEeEeeccccCeEEEEEcC
Q 013282 340 -KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF---VHVYDVKSGYEKEQEIDFFGEISGISFSP 413 (446)
Q Consensus 340 -~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 413 (446)
..|.+||+.. +. ...+... .......|+|||++|+.++.++. +.++++ +|.....+..|.+.+..++|+|
T Consensus 354 ~~~I~~~dl~~-g~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 354 QQHIAKQDLAT-GG-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CceEEEEECCC-CC-eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 3588899854 33 3444432 23457889999999999887764 777887 4556666777888899999998
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=2.1e-15 Score=139.90 Aligned_cols=171 Identities=13% Similarity=0.203 Sum_probs=141.3
Q ss_pred eEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEE
Q 013282 248 VHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAW 326 (446)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 326 (446)
..|+.+++||.+.+.+- .++..+.+. |.+.+.+-.|+|+|.-|++++.||.|++|. ++|-.-.++.....+|+|++|
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 36888889999988874 566666666 899999999999999999999999999998 566555556667789999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCe
Q 013282 327 HPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI 406 (446)
Q Consensus 327 ~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 406 (446)
.|+.+.++.+. .+.+.|=-+.. ...+-..++|.+-|.++.|+|....+++|+.|-..+|||.. |..+.....|..+|
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred CCCCCceEEec-CCeEEEeeccc-ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccce
Confidence 99877666653 45677777754 55566788999999999999999999999999999999954 66777777899999
Q ss_pred EEEEEcCCCCcEEEEEec
Q 013282 407 SGISFSPDTESLFIGVWD 424 (446)
Q Consensus 407 ~~~~~spdg~~l~~~~~D 424 (446)
++++|.|+ ..+++++.+
T Consensus 231 TSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred eeeeeccc-cceeeeeee
Confidence 99999999 555666543
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=9.2e-14 Score=135.86 Aligned_cols=214 Identities=13% Similarity=0.103 Sum_probs=144.3
Q ss_pred CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEe--CCCcEEEEecCcceeeEeeeCCCCeeEEEECC
Q 013282 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP 286 (446)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 286 (446)
..|.++|.+..... .++ .+...+....| +|+|+.++++.. .+..|++|++.+++.......+..+..+.|+|
T Consensus 179 ~~l~~~d~dg~~~~---~lt-~~~~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDGYNQF---VVH-RSPQPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCCCCCE---Eee-cCCCceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 36888887654432 222 33445556655 999986555442 34579999998887655444555566789999
Q ss_pred CCCEEEEE-ecCC--cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCcceEEEecCCC
Q 013282 287 DGKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLG 362 (446)
Q Consensus 287 ~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~~v~iwd~~~~~~~~~~~~~~~~ 362 (446)
||+.|+.. +.++ .|++||+.+++... +..+...+...+|+|+|+.|+..+. ++...||.+...+.....+..+..
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence 99988765 3344 59999998887544 4444556788999999998887775 345555543222333445544444
Q ss_pred ceEEEEEccCCCEEEEEeCC---CeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 363 AIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 363 ~v~~l~~s~dg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
......|+|||++|+..+.+ ..|.+||+.++... .+.. ........|+|||+.|+.++.++....+.
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~ 401 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLN 401 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 56678999999999876643 35889999887533 3332 22345688999999999998887655443
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.3e-13 Score=135.43 Aligned_cols=206 Identities=15% Similarity=0.120 Sum_probs=143.0
Q ss_pred CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEe--CCCcEEEEecCcceeeEeeeCCCCeeEEEECC
Q 013282 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP 286 (446)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 286 (446)
..|.++|...... +.+..+...+....| +|+|+.++++.. .+..|++||+.+++......++..+...+|+|
T Consensus 182 ~~l~~~d~dg~~~----~~lt~~~~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQDGANV----RYLTDGSSLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCCCCCc----EEEecCCCCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC
Confidence 3677888754432 222345556666666 999986555443 34689999999887655444667788899999
Q ss_pred CCCEEEE-EecCC--cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCcceEEEecC
Q 013282 287 DGKLLII-VGDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGN 360 (446)
Q Consensus 287 ~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~--~v~iwd~~~~~~~~~~~~~~ 360 (446)
||+.|+. .+.++ .|++||+.+++. ..+..+.......+|+|+|+.|+..+. +| .|.+||+. +...+.+..+
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~~lt~~ 332 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPRRISFG 332 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeEEeecC
Confidence 9998764 44444 488889987764 456656666778999999999888774 33 57777874 3334455444
Q ss_pred CCceEEEEEccCCCEEEEEeCC---CeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecC
Q 013282 361 LGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 425 (446)
Q Consensus 361 ~~~v~~l~~s~dg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~ 425 (446)
.+.+....|+|+|++|+....+ ..|.+||+.++.. ..+. ....+..+.|+|||+.|+....++
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccC
Confidence 5567778999999999877643 3688899865532 3332 233577889999999988766544
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=1.1e-14 Score=135.27 Aligned_cols=200 Identities=19% Similarity=0.213 Sum_probs=145.2
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEE-EEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCS-RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFP 276 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 276 (446)
++--|+.|=.-|.|.+.+.......... ....-.+..|+++.| -|.+..+|+++-.+|.++++|.. +...
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikW--vpg~~~~Fl~a~~sGnlyly~~~-------~~~~ 254 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKW--VPGSDSLFLVAHASGNLYLYDKE-------IVCG 254 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEE--EeCCCceEEEEEecCceEEeecc-------cccc
Confidence 5566778877888888776543211100 000112356777777 67776688888999999999972 1111
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEE
Q 013282 277 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV 356 (446)
Q Consensus 277 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~ 356 (446)
..-.+....+++..+.+...-+ ..+..++..+.-..+.|...+|+|||++||+.++||.+||+|... .+.+..
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~ 327 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGV 327 (636)
T ss_pred CCCCcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHH
Confidence 1111222234666665543211 112245555554567899999999999999999999999999965 666777
Q ss_pred EecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcC
Q 013282 357 LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 413 (446)
Q Consensus 357 ~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 413 (446)
++.--+...|++|||||+||++|+.|..|.||.+...+.+..-.+|...|+.++|.|
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 777677899999999999999999999999999999999999999999999999997
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1e-13 Score=136.03 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=143.3
Q ss_pred EEEEEe--CCcEEEEeccC---CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC--cEEEEec
Q 013282 192 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDM 264 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg--~v~iwd~ 264 (446)
+.+.+| +|+.|+..+.. ..|.+|++..+... .+ ....+...+..| +|+|+.++++.+.+| .|++||+
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l-~~~~g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LV-ASFRGINGAPSF--SPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Ee-ccCCCCccCceE--CCCCCEEEEEEeCCCCceEEEEEC
Confidence 555555 88888887643 46999999766432 12 122333444555 999997777766666 5999999
Q ss_pred CcceeeEeeeCCCCeeEEEECCCCCEEEEEec-CC--cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCC-
Q 013282 265 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD-NP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK- 340 (446)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~- 340 (446)
.+++......+.......+|+|+|+.|+.++. .+ .|+++++.+++... +..+.......+|+|+|++|+..+.++
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCC
Confidence 88876554445555567899999999887764 33 47777887776433 332334455789999999998876543
Q ss_pred --cEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCC---CeEEEEEcCCCeeEeEeeccccCeEEEEEcC
Q 013282 341 --TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSP 413 (446)
Q Consensus 341 --~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 413 (446)
.|.+||+.. +.. ..+. +........|+|||++|+..+.+ +.|.++++.. .....+..+.+.+..++|+|
T Consensus 359 ~~~I~v~d~~~-g~~-~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 359 QYRIAVMDLST-GSV-RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceeEEEEECCC-CCe-EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 699999854 433 3443 22345678999999988876653 4688888854 44555655667788888887
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=8.6e-14 Score=136.61 Aligned_cols=214 Identities=15% Similarity=0.115 Sum_probs=142.0
Q ss_pred CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeC--CCcEEEEecCcceeeEeeeCCCCeeEEEECC
Q 013282 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP 286 (446)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 286 (446)
..|.+||....... .+ ..+...+....| +|+|+.++++... ...|++|++.+++.......+....+++|+|
T Consensus 184 ~~l~i~D~~g~~~~---~l-t~~~~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDGYNPQ---TI-LRSAEPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCCCCce---Ee-ecCCCccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence 35888887544322 22 234445555555 9999864444322 3469999998887655444555566889999
Q ss_pred CCCEEEE-EecCC--cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CCc--EEEEEccCCCcceEEEecC
Q 013282 287 DGKLLII-VGDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKT--CRIWDLRNLSESVAVLKGN 360 (446)
Q Consensus 287 ~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~~--v~iwd~~~~~~~~~~~~~~ 360 (446)
+|+.|+. .+.++ .|++||+.+++. ..+..+.......+|+|+|+.|+.++. +|. |.++|+.. ++ ...+..+
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt~~ 334 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GS-AERLTFQ 334 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEEeecC
Confidence 9998764 44444 599999988864 445556555677899999999887764 455 55556643 33 3333333
Q ss_pred CCceEEEEEccCCCEEEEEeCCC---eEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEEE
Q 013282 361 LGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 433 (446)
Q Consensus 361 ~~~v~~l~~s~dg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~ 433 (446)
......++|+|+|++|+..+.++ .|.+||+.++... .+. +......+.|+|||++|+..+.++....+...
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 33455789999999998766443 6999999887644 333 33345578999999998887766544444433
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.64 E-value=9.5e-15 Score=138.80 Aligned_cols=223 Identities=15% Similarity=0.161 Sum_probs=170.0
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
.|..+++ ||..|+.+.. ..+.+||.+.++.. .++.+|...|+++++ +.+|+ .|++|+.|..|.+|... -+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~ll---qtLKgHKDtVycVAy--s~dGk-rFASG~aDK~VI~W~~k-lE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLL---QPLKGHKDTVYCVAY--AKDGK-RFASGSADKSVIIWTSK-LE 85 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccc---cccccccceEEEEEE--ccCCc-eeccCCCceeEEEeccc-cc
Confidence 4666777 8877766654 45899999887544 677899999999988 99998 69999999999999853 23
Q ss_pred eeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 013282 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 269 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~ 348 (446)
-+..+.|...|.|+.|+|-...|++++-+ ..-+|...... +...+ ....+.+++|..||.+|+.|-.+|+|.|-+.
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk- 161 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK- 161 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-
Confidence 33456699999999999988889988754 45678765433 22222 3467899999999999999999999999875
Q ss_pred CCCcceEEEe---cCCCceEEEEEccCC-----CEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEE
Q 013282 349 NLSESVAVLK---GNLGAIRSIRYTSDG-----RYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 420 (446)
Q Consensus 349 ~~~~~~~~~~---~~~~~v~~l~~s~dg-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 420 (446)
. +++...+. +...+|.+++|+|.. ..+++.....++.+|.+. |+.+.......-...|+.+-|+|.++++
T Consensus 162 ~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 162 N-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred C-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE
Confidence 3 34333333 356799999999964 477788888888888765 5455544555566789999999999999
Q ss_pred EEecCCc
Q 013282 421 GVWDRTY 427 (446)
Q Consensus 421 ~~~D~~~ 427 (446)
|+.|+..
T Consensus 240 GGsdk~L 246 (1081)
T KOG1538|consen 240 GGSDKQL 246 (1081)
T ss_pred ccCCCce
Confidence 9988653
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=5.2e-16 Score=141.63 Aligned_cols=282 Identities=16% Similarity=0.194 Sum_probs=194.0
Q ss_pred cccceeeeeeccc----cccceeeccceeeeEE--------ecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCC
Q 013282 110 KGASYYEFRRNSR----SVKSTILHFQLRNLVW--------ATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSE 177 (446)
Q Consensus 110 ~~~~~~~f~~~~~----~v~~~~~h~~~~~l~~--------~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~ 177 (446)
..+.-|.|++... .+.++.-||++..--+ .++.+.++....|.+..+|..+.+...-+++.
T Consensus 98 ~~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~------- 170 (545)
T KOG1272|consen 98 GLEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM------- 170 (545)
T ss_pred CCcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-------
Confidence 3445566655432 3444555665543211 13444444444555555665555433333322
Q ss_pred CCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeC
Q 013282 178 KHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN 255 (446)
Q Consensus 178 ~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~ 255 (446)
-.|..+.| +.+++|++- ...++|||-. +....|.+. ...|..+.| -|.- .+|++++.
T Consensus 171 ------------Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHClk~----~~~v~rLeF--LPyH-fLL~~~~~ 229 (545)
T KOG1272|consen 171 ------------ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCLKR----HIRVARLEF--LPYH-FLLVAASE 229 (545)
T ss_pred ------------hhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeehhh----cCchhhhcc--cchh-heeeeccc
Confidence 15777777 556666554 5668888853 334445432 234677777 5663 47889999
Q ss_pred CCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEE
Q 013282 256 DCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA 334 (446)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 334 (446)
.|.++--|+.+|+.+..+. ..+.+..++-+|-...+-+|..+|+|.+|...+..++..+..|.++|.++++.|+|+++|
T Consensus 230 ~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMa 309 (545)
T KOG1272|consen 230 AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMA 309 (545)
T ss_pred CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEe
Confidence 9999999999999999888 677889999999888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEE-cCCCe--eEeEeec--cccCeEEE
Q 013282 335 TGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD-VKSGY--EKEQEID--FFGEISGI 409 (446)
Q Consensus 335 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~--~~~~v~~~ 409 (446)
|.+.|..|+|||+|+.. .+.++.. .-+...+++|..| .|| ++....|.||- .-.+. ....+.. ..++|.++
T Consensus 310 TtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l 385 (545)
T KOG1272|consen 310 TTGLDRKVKIWDLRNFY-QLHTYRT-PHPASNLSLSQKG-LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDL 385 (545)
T ss_pred ecccccceeEeeecccc-ccceeec-CCCcccccccccc-cee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccc
Confidence 99999999999999855 4444433 3467788888766 344 45566699994 22211 1111222 34689999
Q ss_pred EEcCCCCcEEEEEe
Q 013282 410 SFSPDTESLFIGVW 423 (446)
Q Consensus 410 ~~spdg~~l~~~~~ 423 (446)
.|.|-...|-+|-.
T Consensus 386 ~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 386 RFCPYEDVLGIGHA 399 (545)
T ss_pred eeccHHHeeecccc
Confidence 99997777766533
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=5.1e-13 Score=116.94 Aligned_cols=177 Identities=13% Similarity=0.132 Sum_probs=130.4
Q ss_pred CCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEEeccCCcEEEEEcCCC-CeeeEEEEe
Q 013282 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRP-GVSFCSRTT 228 (446)
Q Consensus 150 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~tg~~dg~i~vw~~~~~-~~~~~~~~~ 228 (446)
..++++||-...+...-+.+.. +|.++......||+.-. +.|.||....+ ....+..+.
T Consensus 74 pNkviIWDD~k~~~i~el~f~~-------------------~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~ 133 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNS-------------------EIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETR 133 (346)
T ss_pred CceEEEEecccCcEEEEEEecc-------------------ceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecc
Confidence 5689999976665544444443 58888888888888764 57999999744 333333333
Q ss_pred ecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee---eEeeeCCCCeeEEEECCCCCEEEEEecCCc-EEEEE
Q 013282 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL---SKHFRFPWPVNHSSQSPDGKLLIIVGDNPD-GLLVD 304 (446)
Q Consensus 229 ~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-i~i~d 304 (446)
...++ .+++..+.+...+.+-|-.-|.|+|-|+...+. ...-.|...|.|++++.+|.++|+++..|+ |+|||
T Consensus 134 ~NPkG---lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 134 SNPKG---LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD 210 (346)
T ss_pred cCCCc---eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence 33333 223311222222222345679999999976555 333349999999999999999999999888 59999
Q ss_pred CCCCceEEEecC--CCCceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 013282 305 SMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN 349 (446)
Q Consensus 305 ~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~ 349 (446)
..+|.++..++. ....|++++|+|++.+||++|..||++|+.++.
T Consensus 211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999974 346799999999999999999999999999975
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=4.5e-14 Score=126.61 Aligned_cols=236 Identities=15% Similarity=0.086 Sum_probs=178.9
Q ss_pred eEEEEEe--C--CcEEEEeccCCcEEEEEcCCCCeeeEE---EEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe
Q 013282 191 QVSTLAV--K--DKLLVAGGFQGELICKHLDRPGVSFCS---RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (446)
Q Consensus 191 ~v~~l~~--~--~~~l~tg~~dg~i~vw~~~~~~~~~~~---~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd 263 (446)
.|++++| + ...|+..+.+-.+..+.+...+..... .......++|..+.. .++ .|++|-.+|.+.+|.
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg--~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADG--TLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCC--EEEEEecCCcEEEEe
Confidence 5777777 3 344555546666666666554432211 122233445555543 344 588888999999999
Q ss_pred cCcce----eeEeeeCCCCeeEEEECCCCCE-EEEEecC--CcEEEEECCCCceEEEecCC---------CCceeEEEEC
Q 013282 264 MGKYQ----LSKHFRFPWPVNHSSQSPDGKL-LIIVGDN--PDGLLVDSMTGKTIASLCGH---------LDFSFASAWH 327 (446)
Q Consensus 264 ~~~~~----~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d--~~i~i~d~~~~~~~~~~~~~---------~~~v~~~~~~ 327 (446)
...+. .+..+....++..+.-+|.... +++||.. ..+.|||+...+.+.+-+.- .-+++++.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 87433 3344444556788888885554 4668877 78999999988666554421 2367889999
Q ss_pred CC--CCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeE-eecccc
Q 013282 328 PN--GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ-EIDFFG 404 (446)
Q Consensus 328 p~--~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~ 404 (446)
|. ...||+++.-+.||+||.+...+++..+.--..+++++...|.|++|++|..-|.+..||+++++.... +.+..|
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 87 889999999999999999998899999998888999999999999999999999999999999988777 677889
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 405 EISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 405 ~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
.|++|..+|.+++|++++-|+-+++.-
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999998876543
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=6.3e-14 Score=139.68 Aligned_cols=237 Identities=11% Similarity=0.095 Sum_probs=167.2
Q ss_pred EEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec-----Cc
Q 013282 192 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM-----GK 266 (446)
Q Consensus 192 v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~-----~~ 266 (446)
+..+..-...++++...-.|+|||...+.....+.........|+.+.+...-+ ..++++|+.||.||||+- .+
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D-~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQD-DALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccc-hhheeeeccCceEEEecccccccCC
Confidence 334444556677777777899999988764432222223345677777764334 447999999999999963 22
Q ss_pred ceeeEeee-C-------CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecC-CCCceeEEEECC-CCCEEEEE
Q 013282 267 YQLSKHFR-F-------PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG-HLDFSFASAWHP-NGVTFATG 336 (446)
Q Consensus 267 ~~~~~~~~-~-------~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~p-~~~~l~sg 336 (446)
.+.+..+. . .+.-.-+.|.....+|+++|+-..|+|||....++++.+.. ....|+++.-+- .|+.+++|
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence 33443332 0 11113456777667788888788999999998887777653 344566654333 57999999
Q ss_pred eCCCcEEEEEccCCCc--ceEEEecCCCc--eEEEEEccCCC-EEEEEeCCCeEEEEEcCCCee--EeEeeccc--c-Ce
Q 013282 337 NQDKTCRIWDLRNLSE--SVAVLKGNLGA--IRSIRYTSDGR-YMATAEPADFVHVYDVKSGYE--KEQEIDFF--G-EI 406 (446)
Q Consensus 337 s~d~~v~iwd~~~~~~--~~~~~~~~~~~--v~~l~~s~dg~-~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--~-~v 406 (446)
..||.||+||.|.... .+...+.|... |..+.+.+.|- .|++|+.+|.|++||++.... ...+..|. | .+
T Consensus 1228 faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccc
Confidence 9999999999987443 67778888877 99999999774 599999999999999998421 22222333 3 59
Q ss_pred EEEEEcCCCCcEEEEEecCCcceE
Q 013282 407 SGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 407 ~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+++..++....+|+|+. +.++++
T Consensus 1308 Tal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred eeeeeccCCCeeeecCc-ceEEEE
Confidence 99999999999999887 665554
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.9e-13 Score=131.41 Aligned_cols=277 Identities=13% Similarity=0.100 Sum_probs=179.3
Q ss_pred eeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEEeccCCcEEEE
Q 013282 135 NLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICK 214 (446)
Q Consensus 135 ~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~tg~~dg~i~vw 214 (446)
-++.+.+....+...+..+.+|...+.. ....... .. .++.....+.++++.++++|+|..||.|.+|
T Consensus 165 ~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~---~~--------~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRD---IT--------VHHTFNITCVALSPNERYLAAGDSDGRILVW 232 (792)
T ss_pred cEEEcCCceEEEEEEeeeEEEEEecccc-eeeccch---hh--------hhhcccceeEEeccccceEEEeccCCcEEEE
Confidence 3445555556666667788888876653 1111110 00 0111112345555699999999999999999
Q ss_pred EcCC-CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEE
Q 013282 215 HLDR-PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLII 293 (446)
Q Consensus 215 ~~~~-~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 293 (446)
.--. .........++-|...|+++.| +++|. .|++|+..|.+.+|.+.+++....-+...+|..+.+|||+.+.+.
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~~L~f--S~~G~-~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVNSLSF--SSDGA-YLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred eccccccccccceEEEecccccceeEE--ecCCc-eEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEE
Confidence 6543 2333334566677888999988 99998 699999999999999999984333347899999999999999999
Q ss_pred EecCCcEEEEECCCCceEEEecC-----------CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCC-----------
Q 013282 294 VGDNPDGLLVDSMTGKTIASLCG-----------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS----------- 351 (446)
Q Consensus 294 ~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~----------- 351 (446)
...|..|.+....+.....++.+ ..+-.+.++++|..+.++-.+..|.|.+||+-+..
T Consensus 310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n 389 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDEN 389 (792)
T ss_pred EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeec
Confidence 99999999988755433333322 12334556667755556666666666666653211
Q ss_pred ---------------------------------------------------cc-----eEEEecCCCceEEEEEcc-CCC
Q 013282 352 ---------------------------------------------------ES-----VAVLKGNLGAIRSIRYTS-DGR 374 (446)
Q Consensus 352 ---------------------------------------------------~~-----~~~~~~~~~~v~~l~~s~-dg~ 374 (446)
.. .....+|...+...++.+ ...
T Consensus 390 ~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs 469 (792)
T KOG1963|consen 390 YSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS 469 (792)
T ss_pred ccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc
Confidence 00 001123444444444433 223
Q ss_pred -EEEEEeCCCeEEEEEcCCC----------eeEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 375 -YMATAEPADFVHVYDVKSG----------YEKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 375 -~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
..++++.||.++||-+... .+...-.-|..+++.++|+.||..|+++ .|.++
T Consensus 470 ~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~I 532 (792)
T KOG1963|consen 470 VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTI 532 (792)
T ss_pred ceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEE
Confidence 6789999999999987321 1222222377899999999999777654 44444
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.3e-12 Score=116.22 Aligned_cols=237 Identities=17% Similarity=0.116 Sum_probs=152.9
Q ss_pred ccceEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeee---------EEEEeec-CCCceeeEEEEeCCCCCeEEEEEe
Q 013282 188 TQTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSF---------CSRTTYD-DNAITNAVEIYGSPSGAVHFTASN 254 (446)
Q Consensus 188 ~~~~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~---------~~~~~~~-~~~~v~~i~~~~s~~~~~~l~s~s 254 (446)
.+..|+||+| .+.-|+.|+..| |.+|..+...... +..++.+ ....|+++.+ .++|..++-++-
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqw--n~dgt~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQW--NEDGTILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEE--cCCCCEEeeccc
Confidence 4447999999 667888888776 8999876543211 1111111 1245677766 899985444445
Q ss_pred CCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECC-CCceEEEecCCCCceeEEEECCCCCE
Q 013282 255 NDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIASLCGHLDFSFASAWHPNGVT 332 (446)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~p~~~~ 332 (446)
.|..|.|||+.++..+.... ..+.++-+.||||+.+|++++-|+..++|... +....+-.. ..+.|...+|+|+|++
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSF 294 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCE
Confidence 67889999999988877664 66779999999999999999999999999654 333333232 3458999999999998
Q ss_pred EEEEeCCCcEEEEEccCCCcc--------------eEEE------ec---CCCceEEEEEccCCCEEEEEeCCC------
Q 013282 333 FATGNQDKTCRIWDLRNLSES--------------VAVL------KG---NLGAIRSIRYTSDGRYMATAEPAD------ 383 (446)
Q Consensus 333 l~sgs~d~~v~iwd~~~~~~~--------------~~~~------~~---~~~~v~~l~~s~dg~~l~~~~~dg------ 383 (446)
|+.... |.-++|.+.-.+++ +..+ .+ -.+.+.+++|.|.|.+||+.-..+
T Consensus 295 LLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 295 LLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 776543 33455554221111 0000 11 135788999999999999876543
Q ss_pred --eEEEEEcCCCeeEeEee--c--cccCeEEEEEcC---CCCcEEEEEecCCcceE
Q 013282 384 --FVHVYDVKSGYEKEQEI--D--FFGEISGISFSP---DTESLFIGVWDRTYGSL 430 (446)
Q Consensus 384 --~i~iwd~~~~~~~~~~~--~--~~~~v~~~~~sp---dg~~l~~~~~D~~~~~~ 430 (446)
.|.+||.+..-. ..+. + ......-|+|+| +|.+|.++=.-|.+...
T Consensus 374 k~~i~~fdtr~sp~-vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 374 KLHISRFDTRKSPP-VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred hhhhhhhcccccCc-eEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEee
Confidence 477888775432 2222 1 112355567776 45555555444554433
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=2.8e-14 Score=124.79 Aligned_cols=195 Identities=14% Similarity=0.157 Sum_probs=154.2
Q ss_pred CCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc---eeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCC
Q 013282 232 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY---QLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT 307 (446)
Q Consensus 232 ~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 307 (446)
..++++.++ ++++. .++.+.+...|.||..... +..+++. |...|+.+.|+|..+.|++++.|..-++|....
T Consensus 10 ~~pitchAw--n~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 10 LEPITCHAW--NSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred cCceeeeee--cCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 346777766 88887 6888888889999987654 4666777 999999999999999999999999999999843
Q ss_pred C---ceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCc---ceEEEecCCCceEEEEEccCCCEEEEEeC
Q 013282 308 G---KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEP 381 (446)
Q Consensus 308 ~---~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~~~~~ 381 (446)
+ ++...+..+...++++.|+|.++.||+||.-..|.||-+..... ..+.-+.+...|+++.|+|++-+|++|+.
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 3 45556677899999999999999999999999999998853111 12233456778999999999999999999
Q ss_pred CCeEEEEEcC-----C-------------CeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcce
Q 013282 382 ADFVHVYDVK-----S-------------GYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGS 429 (446)
Q Consensus 382 dg~i~iwd~~-----~-------------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~ 429 (446)
|+..+||..- . |....+.....+.|.++.|+|+|..|+-.+.|.++..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence 9999999632 1 1122223234578999999999999998888877643
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=134.88 Aligned_cols=206 Identities=16% Similarity=0.165 Sum_probs=153.1
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc-
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY- 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~- 267 (446)
.|.||+| +|.+|++|+.|-.+.|||.-..+.. ..+-.+|.+.|-++.|....+ ..++++|+.|..|++||+...
T Consensus 52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred eecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCC-CeEEEeccCcceEEEEeccccc
Confidence 7999999 9999999999999999998765544 455668999999999964444 448999999999999999741
Q ss_pred ---------eeeEeee-CCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceE-E---------EecCCCCceeEEEE
Q 013282 268 ---------QLSKHFR-FPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTGKTI-A---------SLCGHLDFSFASAW 326 (446)
Q Consensus 268 ---------~~~~~~~-~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~-~---------~~~~~~~~v~~~~~ 326 (446)
.....+. |...|..++..|++ ..+.+++.||+|+-+|++....- . .+....-...++.+
T Consensus 129 ~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lti 208 (758)
T KOG1310|consen 129 EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTI 208 (758)
T ss_pred ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeee
Confidence 2233333 77888899999988 78899999999999999853211 1 11112235678999
Q ss_pred CC-CCCEEEEEeCCCcEEEEEccCCCc-----------------ceEEEe-cCC----C-------ceEEEEEccCCCEE
Q 013282 327 HP-NGVTFATGNQDKTCRIWDLRNLSE-----------------SVAVLK-GNL----G-------AIRSIRYTSDGRYM 376 (446)
Q Consensus 327 ~p-~~~~l~sgs~d~~v~iwd~~~~~~-----------------~~~~~~-~~~----~-------~v~~l~~s~dg~~l 376 (446)
+| +..+||+|+.|.-.++||.|...+ ++..+. +|. + .++-++|+|+|.-|
T Consensus 209 sp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtEl 288 (758)
T KOG1310|consen 209 SPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTEL 288 (758)
T ss_pred cCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEE
Confidence 99 668999999999999999542111 222222 222 1 25668899999888
Q ss_pred EEEeCCCeEEEEEcCCCeeEeEe
Q 013282 377 ATAEPADFVHVYDVKSGYEKEQE 399 (446)
Q Consensus 377 ~~~~~dg~i~iwd~~~~~~~~~~ 399 (446)
+..-....|+++|+..++....+
T Consensus 289 Lvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 289 LVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEeeCCeEEEEEeecCCCCceee
Confidence 77777778999999887655443
No 220
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1.5e-13 Score=118.83 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=101.5
Q ss_pred eEEEECCCCCEEEEEec----------CCcEEEEECC-CCceEEEecC-CCCceeEEEECCCCCEEEEE--eCCCcEEEE
Q 013282 280 NHSSQSPDGKLLIIVGD----------NPDGLLVDSM-TGKTIASLCG-HLDFSFASAWHPNGVTFATG--NQDKTCRIW 345 (446)
Q Consensus 280 ~~~~~sp~~~~l~~~~~----------d~~i~i~d~~-~~~~~~~~~~-~~~~v~~~~~~p~~~~l~sg--s~d~~v~iw 345 (446)
..+.|+|+|+.|++-.. -+...||-++ .+..+..+.- ..++|.+++|+|+|+.||+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999988765433 1234444442 2234444432 34579999999999987654 467899999
Q ss_pred EccCCCcceEEEecCCCceEEEEEccCCCEEEEEeC---CCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 346 DLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 346 d~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
|++ ...+..+. ...++.+.|+|+|++|++|+. .|.|.+||+++.+.+.... | ..++.++|+|+|++|+++.
T Consensus 89 d~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 89 DVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEE
Confidence 995 56666664 457889999999999999874 4679999999887765543 3 3478999999999999987
Q ss_pred ec
Q 013282 423 WD 424 (446)
Q Consensus 423 ~D 424 (446)
..
T Consensus 163 t~ 164 (194)
T PF08662_consen 163 TS 164 (194)
T ss_pred ec
Confidence 64
No 221
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.3e-13 Score=132.65 Aligned_cols=227 Identities=19% Similarity=0.172 Sum_probs=166.9
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 277 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (446)
|+++++.. ....|.||...++ .|...+.+|..++..+.+..++.....+++++.+|.|++||...+.+++++....
T Consensus 27 D~k~l~~~-~~~~V~VyS~~Tg---~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~ 102 (792)
T KOG1963|consen 27 DAKFLFLC-TGNFVKVYSTATG---ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL 102 (792)
T ss_pred CCcEEEEe-eCCEEEEEecchH---hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence 55555544 4567999999887 4556888899999988885444443567799999999999999888877776433
Q ss_pred CeeEEEE-----------------------------------------------------------CCCCCEEEEEecCC
Q 013282 278 PVNHSSQ-----------------------------------------------------------SPDGKLLIIVGDNP 298 (446)
Q Consensus 278 ~v~~~~~-----------------------------------------------------------sp~~~~l~~~~~d~ 298 (446)
++..+.+ ++.|...+... +.
T Consensus 103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~-~~ 181 (792)
T KOG1963|consen 103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH-MC 181 (792)
T ss_pred ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE-ee
Confidence 3333332 22222222222 23
Q ss_pred cEEEEECCCCceEEE----ecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccC---CCcceEEEecCCCceEEEEEcc
Q 013282 299 DGLLVDSMTGKTIAS----LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN---LSESVAVLKGNLGAIRSIRYTS 371 (446)
Q Consensus 299 ~i~i~d~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~s~ 371 (446)
.+.+|...++..... -..|.-.+++.++||+++++|+|..||.|.+|.--. .....+.+.-|...|++++|++
T Consensus 182 ~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~ 261 (792)
T KOG1963|consen 182 KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS 261 (792)
T ss_pred eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec
Confidence 456666655331110 013666789999999999999999999999996522 1235677888999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 372 DGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 372 dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
+|.+|++|+..|.+.+|.+.+++ .+-++...++|..+.+|||+.+.++...|..+-.+
T Consensus 262 ~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 262 DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 99999999999999999999987 44455577899999999999999988888876543
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.1e-12 Score=128.51 Aligned_cols=212 Identities=16% Similarity=0.139 Sum_probs=137.8
Q ss_pred EEEEEe--CCcEEEEeccC---CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe--c
Q 013282 192 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD--M 264 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd--~ 264 (446)
+.+.+| +|+.|+..+.. ..|.+|++.++... .+. ...+.+....| +|+|+.++++.+.+|...||. +
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~---~l~-~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR---VVA-NFKGSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---Eee-cCCCCccceEE--CCCCCEEEEEEccCCCceEEEEEC
Confidence 445555 88888877643 35999999776432 221 22233444554 999997667778888766665 4
Q ss_pred CcceeeEeeeCCCCeeEEEECCCCCEEEEEec-CCcEEEE--ECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCC-
Q 013282 265 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD-NPDGLLV--DSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK- 340 (446)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~- 340 (446)
.++.......+........|+|||+.|+..+. .+...|| ++.+++.. .+..+.......+|+|+|++|+..+.++
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCC
Confidence 45544333334445667889999998877664 4555555 54555432 2322233445678999999999877654
Q ss_pred --cEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCC---eEEEEEcCCCeeEeEeeccccCeEEEEEcCC
Q 013282 341 --TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPD 414 (446)
Q Consensus 341 --~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~spd 414 (446)
.|.+||+.. +. ...+... .....+.|+|||+.|+.++.++ .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus 351 ~~~I~v~d~~~-g~-~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 351 AFKLYVQDLAT-GQ-VTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred cEEEEEEECCC-CC-eEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 699999954 33 3333332 3456789999999988877544 4666676 45555556667778888899884
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=9.3e-14 Score=123.39 Aligned_cols=181 Identities=18% Similarity=0.252 Sum_probs=131.1
Q ss_pred eeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee--CCCCeeEEEECC-CCCEEEEEecCCcEEEEECC-CC---
Q 013282 236 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSM-TG--- 308 (446)
Q Consensus 236 ~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~-~~--- 308 (446)
..+++ ++.-- .++++.+|-.|++|+-.. ++...++ ....|.|++|-| .++.|++|+.. .|.||... ++
T Consensus 102 r~~aW--hqH~~-~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 102 RGVAW--HQHII-AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred eeEee--chhhh-hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 34444 55332 477888999999999766 4444454 566799999999 45577777766 48899764 21
Q ss_pred ceEE----------EecCCCCceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEE
Q 013282 309 KTIA----------SLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 377 (446)
Q Consensus 309 ~~~~----------~~~~~~~~v~~~~~~p~~~~l~sgs~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 377 (446)
..+. .-.+| .+|++++|+++|..+++++. +..|.|||... +..+....-..+.++-+.|||||.+|.
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCceeeEEEcCCCCEEE
Confidence 2111 11234 68999999999999999987 67899999965 443333333467899999999999999
Q ss_pred EEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEe
Q 013282 378 TAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 378 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 423 (446)
+++.|+..++|............-..+.|...+|+|.|++|+.++.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 9999999999965544333333445569999999999998765544
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.3e-12 Score=126.74 Aligned_cols=212 Identities=15% Similarity=0.129 Sum_probs=145.1
Q ss_pred eEEEEEe--CCcEEEEecc---CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCc--EEEEe
Q 013282 191 QVSTLAV--KDKLLVAGGF---QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFD 263 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~--v~iwd 263 (446)
.+.+.+| +|+.|+..+. +..|.+|++.++... . .....+.+....| +|+|+.++++.+.++. |++||
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~-l~~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---L-VGNFPGMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---E-eecCCCcccCcEE--CCCCCEEEEEEecCCCceEEEEE
Confidence 4666666 8898888764 468999999776432 1 2233444555555 9999977777776665 77779
Q ss_pred cCcceeeEeeeCCCCeeEEEECCCCCEEEEEec-C--CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCC-
Q 013282 264 MGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD-N--PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD- 339 (446)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d- 339 (446)
+.+++......+........|+|||+.|+.++. + ..|+++|+.+++. ..+..+...+...+|+|+|+.|+..+.+
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~ 355 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGG 355 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence 888876554446666778999999999887764 2 3688889876654 3444345556778999999999887653
Q ss_pred --CcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCC------CeEEEEEcCCCeeEeEeeccccCeEEEEE
Q 013282 340 --KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA------DFVHVYDVKSGYEKEQEIDFFGEISGISF 411 (446)
Q Consensus 340 --~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 411 (446)
..|.+||+.. .....+.. ...+..+.|+|||+.|+..+.+ ..|.++|+..+.. ..+. ..+.+...+|
T Consensus 356 ~~~~i~~~d~~~--~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~W 430 (435)
T PRK05137 356 GQFSIGVMKPDG--SGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAW 430 (435)
T ss_pred CceEEEEEECCC--CceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCccc
Confidence 3578888743 33344432 2356788999999988776543 3588889876543 3343 3556777888
Q ss_pred cCC
Q 013282 412 SPD 414 (446)
Q Consensus 412 spd 414 (446)
+|-
T Consensus 431 sp~ 433 (435)
T PRK05137 431 SPL 433 (435)
T ss_pred CCC
Confidence 873
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=7.4e-13 Score=134.15 Aligned_cols=237 Identities=16% Similarity=0.117 Sum_probs=163.2
Q ss_pred eEEEEEe---CCcEEEEeccCCcEEEEEcCCCC----eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe
Q 013282 191 QVSTLAV---KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (446)
Q Consensus 191 ~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd 263 (446)
.|..++. ++.++++|+.||+|++|++..-. ...+..+.....+.+..+.+ .+++. .++.++.||.|++.+
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~--~~~~~-~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM--CGNGD-QFAVSTKDGSVRVLR 1126 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe--ccCCC-eEEEEcCCCeEEEEE
Confidence 4445555 56899999999999999986432 22333444446677888887 56666 588889999999999
Q ss_pred cCcce-------eeEeee--CCCCeeEE-EECC-CCC-EEEEEecCCcEEEEECCCCceEEEecC--CCCceeEEEECCC
Q 013282 264 MGKYQ-------LSKHFR--FPWPVNHS-SQSP-DGK-LLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPN 329 (446)
Q Consensus 264 ~~~~~-------~~~~~~--~~~~v~~~-~~sp-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~p~ 329 (446)
+.... ..+... ..+.+..+ ++.. .+. .++.++..+.|..||+++......++. ..+.|++++.+|.
T Consensus 1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~ 1206 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW 1206 (1431)
T ss_pred ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCC
Confidence 87521 111111 23333333 3322 334 788899999999999998776666553 4578999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCCcceEEEe-cCCCceEEEEEccCCC---EEEEEe--CCCeEEEEEcCCCeeEeEeeccc
Q 013282 330 GVTFATGNQDKTCRIWDLRNLSESVAVLK-GNLGAIRSIRYTSDGR---YMATAE--PADFVHVYDVKSGYEKEQEIDFF 403 (446)
Q Consensus 330 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~s~dg~---~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~ 403 (446)
++++++|+..|.+.+||+|- +.++.... ++..+++.+..+|-.+ ..++++ ..+.|.+|++.+|.+...+....
T Consensus 1207 ~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~ 1285 (1431)
T KOG1240|consen 1207 CNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASD 1285 (1431)
T ss_pred ceEEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCC
Confidence 99999999999999999986 55555443 4557888888777433 444444 57789999999986655554321
Q ss_pred -----------------cC--eEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 404 -----------------GE--ISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 404 -----------------~~--v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
.. .....+..-+.++++|+.|..|+.|-
T Consensus 1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 11 11223333456788899998887653
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.57 E-value=7.5e-15 Score=142.75 Aligned_cols=224 Identities=17% Similarity=0.210 Sum_probs=162.1
Q ss_pred cccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcC
Q 013282 140 TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLD 217 (446)
Q Consensus 140 ~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~ 217 (446)
++...+....+..+++|++.++ ..+.+..||-. .|+.+++ +..++++++.|..|++|.+.
T Consensus 201 tg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~----------------ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 201 TGRYIITGSDDRLVKIWSMETA--RCLASCRGHSG----------------DITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred ccceEeecCccceeeeeeccch--hhhccCCCCcc----------------ccchhccchhhhhhhhcccCceEEEEecC
Confidence 4455555666778899997666 44555666533 5888888 66788999999999999998
Q ss_pred CCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEee---------------e--------
Q 013282 218 RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF---------------R-------- 274 (446)
Q Consensus 218 ~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---------------~-------- 274 (446)
.+... .++.+|.+.|++++| +|-. +.+.||++++||.. ..+.... .
T Consensus 263 ~~~pv---svLrghtgavtaiaf--sP~~-----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 263 DGAPV---SVLRGHTGAVTAIAF--SPRA-----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred CCchH---HHHhccccceeeecc--Cccc-----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccc
Confidence 87543 567799999999998 7653 67899999999976 1111000 0
Q ss_pred ---------CCCCeeEEEECCCCC-----------EEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC-CCCEE
Q 013282 275 ---------FPWPVNHSSQSPDGK-----------LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTF 333 (446)
Q Consensus 275 ---------~~~~v~~~~~sp~~~-----------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l 333 (446)
....+.+++|...+- +.+++-.+..+.+|++.+|+.++.+.+|...++.+.+|| +....
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred ccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 000111222222222 223333455678999999999999999999999999999 67777
Q ss_pred EEEeCCCcEEEEEccCCCcceEEE-ecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 013282 334 ATGNQDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 394 (446)
Q Consensus 334 ~sgs~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~ 394 (446)
.+++.||...|||+-. +.+++.. .+ .+.+..-+||++|..++....-|.++|.....++
T Consensus 412 msag~dgst~iwdi~e-g~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWE-GIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred hhccCCCceEeeeccc-CCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 8999999999999976 5555444 45 4567788999999999988888999998765543
No 227
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.3e-14 Score=125.10 Aligned_cols=196 Identities=12% Similarity=0.119 Sum_probs=152.2
Q ss_pred eeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc------ceeeEeee--CCCCeeEEEECCCCCEEEE
Q 013282 222 SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK------YQLSKHFR--FPWPVNHSSQSPDGKLLII 293 (446)
Q Consensus 222 ~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~------~~~~~~~~--~~~~v~~~~~sp~~~~l~~ 293 (446)
.+|.+-..+|.+.|+++.| +.++. +|++|+.|..+++|.++. .+++.... |...|.|++|.....++.+
T Consensus 46 ~~~qKD~~~H~GCiNAlqF--S~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQF--SHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred chhhhhhhhhccccceeee--ccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec
Confidence 3555666789999999998 88876 799999999999999853 45555555 5678999999998899999
Q ss_pred EecCCcEEEEECCCCceEEEecC--CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEe--cCCCceEEEEE
Q 013282 294 VGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLK--GNLGAIRSIRY 369 (446)
Q Consensus 294 ~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~l~~ 369 (446)
|+.+++|.+.|+.+.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||+|....++..+- .......++-|
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 99999999999999998887752 235899999999999999999999999999987443443322 23446778899
Q ss_pred ccCC-CEEEEEeCCCeEEEEEcCCCee-EeEeec---cc---cCeEEEEEcCCCCcEEE
Q 013282 370 TSDG-RYMATAEPADFVHVYDVKSGYE-KEQEID---FF---GEISGISFSPDTESLFI 420 (446)
Q Consensus 370 s~dg-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~---~~---~~v~~~~~spdg~~l~~ 420 (446)
+|.. ++|++++..+-+.+||.+.... +.+... .. ....++.|+|.|..|.+
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence 9966 5778888888899999986532 222211 11 23367889999987654
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=2.2e-11 Score=115.88 Aligned_cols=255 Identities=18% Similarity=0.200 Sum_probs=158.1
Q ss_pred ecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEE
Q 013282 148 MSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (446)
Q Consensus 148 ~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~ 227 (446)
..++++.+.|..+.+....+...+.. + ....++.+|+++++++.||.|.++|+.+.+.......
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~-h---------------~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAP-H---------------AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTE-E---------------EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCc-e---------------eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec
Confidence 34677888898887655555433211 0 1223344899999999999999999998875533222
Q ss_pred eecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeC--------CCCeeEEEECCCCCEEEEE-ecCC
Q 013282 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF--------PWPVNHSSQSPDGKLLIIV-GDNP 298 (446)
Q Consensus 228 ~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~-~~d~ 298 (446)
+ .....+.+ +++|+.++++....+.|.++|.++.+++..+.. ...+..+..+|....+++. -+.+
T Consensus 77 --G--~~~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 77 --G--GNPRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG 150 (369)
T ss_dssp --S--SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred --C--CCcceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC
Confidence 2 22345555 999997777777899999999999999888762 2357788888888866555 4568
Q ss_pred cEEEEECCCCceEE-EecCCCCceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCcceE---------------------
Q 013282 299 DGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVA--------------------- 355 (446)
Q Consensus 299 ~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~sgs-~d~~v~iwd~~~~~~~~~--------------------- 355 (446)
.|.+.|....+.+. .............|+|++++++.+. ....|-++|..+ .+.+.
T Consensus 151 ~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~~ 229 (369)
T PF02239_consen 151 EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPGF 229 (369)
T ss_dssp EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc-ceEEEEeeccccccccccccccCCCc
Confidence 89999987655432 2222345677899999999887654 456777777654 22111
Q ss_pred ----------------------------------EEecCCCceEEEEEccCCCEEEEE----eCCCeEEEEEcCCCeeEe
Q 013282 356 ----------------------------------VLKGNLGAIRSIRYTSDGRYMATA----EPADFVHVYDVKSGYEKE 397 (446)
Q Consensus 356 ----------------------------------~~~~~~~~v~~l~~s~dg~~l~~~----~~dg~i~iwd~~~~~~~~ 397 (446)
.+....++ ..++.+|++++|.+. ...+.|.++|.++.+...
T Consensus 230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred ceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence 11221122 356779999999988 345789999999987666
Q ss_pred Eeeccc-cCeEEEEEcCCCCcEEEEEecCC
Q 013282 398 QEIDFF-GEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 398 ~~~~~~-~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
.+.... ..+..+.|+++|+.+.++.|++.
T Consensus 309 ~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 309 TITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp -HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred EEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 654322 35899999999999999999876
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=5e-14 Score=131.22 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=133.9
Q ss_pred EEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee--CCCCeeEEEECC--CCCEEEEEecCCcEE
Q 013282 226 RTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSP--DGKLLIIVGDNPDGL 301 (446)
Q Consensus 226 ~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp--~~~~l~~~~~d~~i~ 301 (446)
..+.+|.+-|+++.| +.+|. +|++||.|-.+.|||.-..+++..+. |...|.++.|-| ..+.+++|..|..|+
T Consensus 44 ~eL~GH~GCVN~LeW--n~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEW--NADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceee--cCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 445689999999988 89998 79999999999999999888888887 899999999999 556789999999999
Q ss_pred EEECCCC----------ceEEEecCCCCceeEEEECCCC-CEEEEEeCCCcEEEEEccCCCcceEEEecC---------C
Q 013282 302 LVDSMTG----------KTIASLCGHLDFSFASAWHPNG-VTFATGNQDKTCRIWDLRNLSESVAVLKGN---------L 361 (446)
Q Consensus 302 i~d~~~~----------~~~~~~~~~~~~v~~~~~~p~~-~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~---------~ 361 (446)
++|+... ...+.+..|...|..++-.|++ +.+.+++.||+++-+|+|.+..+......+ .
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9999742 2344566799999999999987 899999999999999999754433322111 2
Q ss_pred CceEEEEEccCC-CEEEEEeCCCeEEEEEc
Q 013282 362 GAIRSIRYTSDG-RYMATAEPADFVHVYDV 390 (446)
Q Consensus 362 ~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~ 390 (446)
-...++..+|.. .+||+|+.+-..++||.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 246688999966 58899999999999994
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=4.8e-12 Score=124.22 Aligned_cols=212 Identities=22% Similarity=0.209 Sum_probs=143.1
Q ss_pred CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC--CcEEEEecCcceeeEeeeCCCCeeEEEECC
Q 013282 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNHSSQSP 286 (446)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 286 (446)
..|.+++...... +.+..+...+....+ +|+|+.++++...+ ..|++|++.+++......+...+.+++|+|
T Consensus 170 ~~l~~~d~~g~~~----~~l~~~~~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 170 YELQVADYDGANP----QTITRSREPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP 243 (417)
T ss_pred ceEEEEcCCCCCC----EEeecCCCceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC
Confidence 3577777653332 222234444555554 99999655544333 479999999887655555666677899999
Q ss_pred CCCEEEEE-ecC--CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCcceEEEecC
Q 013282 287 DGKLLIIV-GDN--PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGN 360 (446)
Q Consensus 287 ~~~~l~~~-~~d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~--~v~iwd~~~~~~~~~~~~~~ 360 (446)
+|+.|+.. +.+ ..|++||+.+++. ..+..+.......+|+|+|+.|+..+. .+ .|.++|+.. ++ ...+..+
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~ 320 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTFR 320 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecC
Confidence 99988654 333 4699999987764 344445555567899999998887664 33 577777753 33 4445545
Q ss_pred CCceEEEEEccCCCEEEEEeCCC---eEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 361 LGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 361 ~~~v~~l~~s~dg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
...+..+.|+|+|++|+.++.++ .|.+||+.++... .+.. ........|+|+|++|+.+..++....+.
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 55677889999999999888775 7999999876432 2222 22345678999999998888776554443
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.6e-12 Score=121.96 Aligned_cols=179 Identities=13% Similarity=0.156 Sum_probs=142.1
Q ss_pred EEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEec------CCCC---
Q 013282 250 FTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC------GHLD--- 319 (446)
Q Consensus 250 l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~--- 319 (446)
|++++....|+-++++.|+.+..+. ....++++.+++-..+|++|+.+|.|..||.++.+.+..+. .|.+
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 4445566679999999999999988 45889999999998999999999999999999887766654 2333
Q ss_pred --ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCC--CEEEEEeCCCeEEEEEcCCCee
Q 013282 320 --FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYE 395 (446)
Q Consensus 320 --~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg--~~l~~~~~dg~i~iwd~~~~~~ 395 (446)
.|+++.|+.+|-.+++|+.+|.|.|||+|.....+..-.+..-+|..+.|.+.+ ..|++. ....++|||-.+|+.
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence 499999999999999999999999999998444444444455689999997763 445543 356799999999976
Q ss_pred EeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 396 KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 396 ~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
...+. ....++.+++-|++-++++|..++.+...
T Consensus 307 ~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 307 MASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred eeecc-ccCCcCceeeecCCceEEEecCCCcceeE
Confidence 65544 45569999999999999999887766543
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=1.4e-11 Score=121.02 Aligned_cols=209 Identities=19% Similarity=0.233 Sum_probs=138.4
Q ss_pred EEEEEe--CCcEEEEeccC---CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC--cEEEEec
Q 013282 192 VSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDM 264 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg--~v~iwd~ 264 (446)
+.+.+| +|++|+.+... ..|++|++.++.... . ..+.+.+.++.| +|+|+.++++.+.++ .|++|++
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~-~~~~~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---V-ASFPGMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---e-ecCCCCccceEE--CCCCCEEEEEECCCCCccEEEEEC
Confidence 444444 88988887654 479999997764321 1 223344445544 999987666666554 5888999
Q ss_pred CcceeeEeeeCCCCeeEEEECCCCCEEEEEecC---CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCC-
Q 013282 265 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN---PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK- 340 (446)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~- 340 (446)
.+++......+........|+|+|+.|+.++.. ..|+++|+.+++.. .+..+...+...+|+|+|++++.++.++
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 266 DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCC
Confidence 887665544455555678899999988776543 26888898877643 4444556677889999999999988876
Q ss_pred --cEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCC---eEEEEEcCCCeeEeEeeccccCeEEEEE
Q 013282 341 --TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGISF 411 (446)
Q Consensus 341 --~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 411 (446)
.|.+||+.. + ....+... .......|+|+|++|+.++.++ .+.+.+.. +.....+..+.+.+..++|
T Consensus 345 ~~~i~~~d~~~-~-~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 345 GFNIAVMDLDG-G-GERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred ceEEEEEeCCC-C-CeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 788999864 3 23333332 2345678999999888877654 45666643 4444444444455555555
No 233
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.4e-11 Score=120.09 Aligned_cols=210 Identities=18% Similarity=0.127 Sum_probs=132.6
Q ss_pred CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeE--EEEEeCCC--cEEEEecCcceeeEeeeCCCCeeEEEE
Q 013282 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVH--FTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNHSSQ 284 (446)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~--l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~ 284 (446)
+.|.+.+.+..... .++. .......- .|+|+|+.+ ++++..+| .|++.++.+++.......+......+|
T Consensus 165 ~~l~~~d~dG~~~~---~lt~-~~~~~~sP--~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~w 238 (428)
T PRK01029 165 GELWSVDYDGQNLR---PLTQ-EHSLSITP--TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTF 238 (428)
T ss_pred ceEEEEcCCCCCce---Eccc-CCCCcccc--eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEE
Confidence 35666666544322 2222 22333333 459999753 33554444 577778888876555555666677899
Q ss_pred CCCCCEEEEEec-CC--cE--EEEECCC---CceEEEecCCCCceeEEEECCCCCEEEEEe-CCCcEEEEEc--cCCCcc
Q 013282 285 SPDGKLLIIVGD-NP--DG--LLVDSMT---GKTIASLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDL--RNLSES 353 (446)
Q Consensus 285 sp~~~~l~~~~~-d~--~i--~i~d~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~d~~v~iwd~--~~~~~~ 353 (446)
||||+.|+..+. .| .+ .+|++.. ++.......+.+.....+|+|+|+.|+..+ .+|...||.+ ...+..
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 999998887653 22 34 4467664 233333333334456789999999888766 4666666654 222233
Q ss_pred eEEEecCCCceEEEEEccCCCEEEEEeCC---CeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecC
Q 013282 354 VAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDR 425 (446)
Q Consensus 354 ~~~~~~~~~~v~~l~~s~dg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~ 425 (446)
...+..+...+....|+|||++|+..+.. ..|.+||+.+++.. .+......+..+.|+|||+.|+....++
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCC
Confidence 45555555567789999999999876643 36999999988653 3443344677899999999988655443
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.52 E-value=1e-13 Score=121.61 Aligned_cols=225 Identities=14% Similarity=0.077 Sum_probs=155.7
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (446)
+..+++++|+++|+.+.- .+.|-|..+-+... .+.- -..|..+.+ ..+...+|...+.++.|.+|++...+-.
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q---lf~c-ldki~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ---LFLC-LDKIVYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchhhHHH---HHHH-HHHhhheee--eccceeeeeeeeccceEEEEEeecceeE
Confidence 366788899999999876 56676665543221 1111 123444544 6777767778899999999999988887
Q ss_pred Eeee-CCCCeeEEEECCCCCEE-EEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 013282 271 KHFR-FPWPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 271 ~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~ 348 (446)
..+. .+.++..++|||+|+.+ .+...+-.|.+|.+.+.+... ++-....+..++|+|+|++.+..++-.....+.+.
T Consensus 85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 7777 77889999999999766 455668899999998876544 33234556889999999999998864222222221
Q ss_pred --CCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccc-cCeEEEEEcCCCCcEEEEEecC
Q 013282 349 --NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF-GEISGISFSPDTESLFIGVWDR 425 (446)
Q Consensus 349 --~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~D~ 425 (446)
..-..+..+....-..+.+.|+|||..|| +||.--...+. ..+. -.+..++|+|.+++|++|+.|+
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheee--eeeeccceeEEEeccccceEEeeccch
Confidence 11233445555556778899999999887 45432221211 1122 3578899999999999999999
Q ss_pred CcceEEEEe
Q 013282 426 TYGSLLEYG 434 (446)
Q Consensus 426 ~~~~~l~~~ 434 (446)
.++.+-++.
T Consensus 233 ~lrvlnh~t 241 (447)
T KOG4497|consen 233 MLRVLNHFT 241 (447)
T ss_pred hhhhhceee
Confidence 888765554
No 235
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=126.94 Aligned_cols=251 Identities=16% Similarity=0.236 Sum_probs=177.6
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC-cc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KY 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~-~~ 267 (446)
.|.++.| .|..|++|+.|..|.+|++...... .....+|...|--..|....+ ..-+++++.||.|++=.+. ++
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~-d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSG-DRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCC-CcCceeccccCceeeeeecccc
Confidence 6888888 8999999999999999999887654 455567776666656542223 3358999999999998763 44
Q ss_pred eee---EeeeCCCCeeEEEECCC-CCEEEEEecCCcEEEEECCCCceEEEec---CCCC---ceeEEEECC-CCCEEEEE
Q 013282 268 QLS---KHFRFPWPVNHSSQSPD-GKLLIIVGDNPDGLLVDSMTGKTIASLC---GHLD---FSFASAWHP-NGVTFATG 336 (446)
Q Consensus 268 ~~~---~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~---~v~~~~~~p-~~~~l~sg 336 (446)
.+. ...+|.++|..++.-|+ ...|.+++.|+.+.-+|++.+.+...+. .+.. ..++++.+| +...+++|
T Consensus 221 ~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg 300 (559)
T KOG1334|consen 221 YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG 300 (559)
T ss_pred ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccC
Confidence 433 22338999999999994 4578999999999999999876544443 2333 578899999 45689999
Q ss_pred eCCCcEEEEEccCCCc-----ceEEEecC------CCceEEEEEccCCCEEEEEeCCCeEEEEEcCC--C----------
Q 013282 337 NQDKTCRIWDLRNLSE-----SVAVLKGN------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKS--G---------- 393 (446)
Q Consensus 337 s~d~~v~iwd~~~~~~-----~~~~~~~~------~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~--~---------- 393 (446)
+.|..+++||.|...+ ++..+..| .-.|++++|+.++.-|.++-.|-.|++|.-.- |
T Consensus 301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~ 380 (559)
T KOG1334|consen 301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPRE 380 (559)
T ss_pred ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchh
Confidence 9999999999975322 12333222 23699999998887777778888899995332 2
Q ss_pred -eeEeEeecccc--CeEEEE-EcCCCCcEEEEE-------ecCCcceEEEEecccCceecccc
Q 013282 394 -YEKEQEIDFFG--EISGIS-FSPDTESLFIGV-------WDRTYGSLLEYGRCRNYSYLDSL 445 (446)
Q Consensus 394 -~~~~~~~~~~~--~v~~~~-~spdg~~l~~~~-------~D~~~~~~l~~~~~~~~~~l~~~ 445 (446)
.....+++|.. .|.++- |-|...|+++|+ |++..+.++++..+.+. .++|+
T Consensus 381 ~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCL 442 (559)
T KOG1334|consen 381 QYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCL 442 (559)
T ss_pred hccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEecc
Confidence 11223667754 477775 468889999885 44444555555555444 45543
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=2.2e-12 Score=111.76 Aligned_cols=223 Identities=16% Similarity=0.142 Sum_probs=152.8
Q ss_pred eEEEEEeCCcEEEEec------------cCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCC-CCeEEEEEeCCC
Q 013282 191 QVSTLAVKDKLLVAGG------------FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPS-GAVHFTASNNDC 257 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~-~~~~l~s~s~dg 257 (446)
++++++.-.+.||+|+ ..|++.+|++...+......+.....+.+..+.|..-+. |...++-+-..|
T Consensus 16 ~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G 95 (339)
T KOG0280|consen 16 PICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARG 95 (339)
T ss_pred CccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccc
Confidence 4555555334666663 457888898876654331112222223334444433333 333466667788
Q ss_pred cEEEEecCcceeeEeee------CC-CCeeEEEECCCCCEEEEEecCCcEEEEECCCCce--EEEecCCCCceeEEEECC
Q 013282 258 GVRDFDMGKYQLSKHFR------FP-WPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLCGHLDFSFASAWHP 328 (446)
Q Consensus 258 ~v~iwd~~~~~~~~~~~------~~-~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~p 328 (446)
.|.++..........+. .. ....++.|++.+..++++-.+|.+.+.+...... ++.+++|.-.+..++|+.
T Consensus 96 ~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~ 175 (339)
T KOG0280|consen 96 QIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSD 175 (339)
T ss_pred eEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeeccc
Confidence 99998765443333333 11 1245778999999999999999999777655544 347889998888888876
Q ss_pred -CCCEEEEEeCCCcEEEEEccCCCcceEE-EecCCCceEEEEEcc-CCCEEEEEeCCCeEEEEEcCC-CeeEeEeecccc
Q 013282 329 -NGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTS-DGRYMATAEPADFVHVYDVKS-GYEKEQEIDFFG 404 (446)
Q Consensus 329 -~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~s~-dg~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~ 404 (446)
+.+++.+|+.|+.+.-||+|.+++.+.. .+-|...|.+|.-+| .+.+|++|+.|..|++||.++ ++++.. ....|
T Consensus 176 ~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~~v~G 254 (339)
T KOG0280|consen 176 KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-AKVGG 254 (339)
T ss_pred CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-Ccccc
Confidence 5679999999999999999965655544 567888999998887 467999999999999999995 444433 23458
Q ss_pred CeEEEEEcCC
Q 013282 405 EISGISFSPD 414 (446)
Q Consensus 405 ~v~~~~~spd 414 (446)
.|..+.++|.
T Consensus 255 GVWRi~~~p~ 264 (339)
T KOG0280|consen 255 GVWRIKHHPE 264 (339)
T ss_pred ceEEEEecch
Confidence 8999999995
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=4.7e-10 Score=106.74 Aligned_cols=234 Identities=16% Similarity=0.169 Sum_probs=150.9
Q ss_pred EEEEEeCCcEEEEecc----CCcEEEEEcCCC-CeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc
Q 013282 192 VSTLAVKDKLLVAGGF----QGELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 192 v~~l~~~~~~l~tg~~----dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~ 266 (446)
..+++.++++|.+... .|.|..|.+... +.................+.+ +|+++.++++...+|.|.++++..
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE--CTTSSEEEEEETTTTEEEEEEECT
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE--ecCCCEEEEEEccCCeEEEEEccC
Confidence 3344558888888766 579999998876 333222222222333345555 999997666667899999999976
Q ss_pred -ceeeEe---eeC-----------CCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCc--eE--EEec-CCCCceeEEE
Q 013282 267 -YQLSKH---FRF-----------PWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGK--TI--ASLC-GHLDFSFASA 325 (446)
Q Consensus 267 -~~~~~~---~~~-----------~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~--~~--~~~~-~~~~~v~~~~ 325 (446)
+.+... +.+ .....++.++|+++++++.. ....|++|++.... .. ..+. ........++
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 443332 211 23477899999999887764 34579999987554 32 2232 2334568899
Q ss_pred ECCCCCEEEEEeC-CCcEEEEEccC-CCc--ceEEEecC------CCceEEEEEccCCCEEEEEe-CCCeEEEEEcC--C
Q 013282 326 WHPNGVTFATGNQ-DKTCRIWDLRN-LSE--SVAVLKGN------LGAIRSIRYTSDGRYMATAE-PADFVHVYDVK--S 392 (446)
Q Consensus 326 ~~p~~~~l~sgs~-d~~v~iwd~~~-~~~--~~~~~~~~------~~~v~~l~~s~dg~~l~~~~-~dg~i~iwd~~--~ 392 (446)
|+|++++++..+. +++|.++++.. .+. .++.+... ......|+++|||++|+++. ..+.|.+|++. +
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence 9999998877665 78899999972 222 22222211 12577899999999988776 46789999993 3
Q ss_pred Ce--eEeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 393 GY--EKEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 393 ~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
+. .+..+.........++++|+|++|+++..+...
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 33 223333334458999999999999998766543
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=2.8e-12 Score=111.17 Aligned_cols=232 Identities=16% Similarity=0.114 Sum_probs=158.7
Q ss_pred CCc-EEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCce-eeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeE--ee
Q 013282 198 KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAIT-NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK--HF 273 (446)
Q Consensus 198 ~~~-~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v-~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~ 273 (446)
+|. .|+-+-..|.|.++...........+.+....-.+ .++.+.|++.+.. ++++-.+|.+.+-+.....+.. ..
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~le~vq~w 161 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMVLEKVQTW 161 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCce-EEEEcCCCcEEEEecceeeeeecccc
Confidence 454 67777888999999876544322122222222222 3667777888874 8888888998866655544444 45
Q ss_pred e-CCCCeeEEEECC-CCCEEEEEecCCcEEEEECC-CCceEEE-ecCCCCceeEEEECC-CCCEEEEEeCCCcEEEEEcc
Q 013282 274 R-FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSM-TGKTIAS-LCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 274 ~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~ 348 (446)
+ |..++....|+. +.+++.+|++|+.+..||++ .++.+.. .+.|...|.++.-+| .+.+++||+.|-.|++||.|
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 5 788888888876 55788999999999999999 4444443 456888999998887 68899999999999999999
Q ss_pred CCCcceEEEecCCCceEEEEEccCC--CEEEEEeCCCeEEEEEcCCCeeE-----eEeeccccCeEEEEEcCCCCcEEEE
Q 013282 349 NLSESVAVLKGNLGAIRSIRYTSDG--RYMATAEPADFVHVYDVKSGYEK-----EQEIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 349 ~~~~~~~~~~~~~~~v~~l~~s~dg--~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
+.++++..-+. .+.|..+.++|.- +.|+++-.+| .+|-+...+... .....|.+-..+-.|.....+|+++
T Consensus 242 nm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 242 NMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred cccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence 88888876543 4789999999953 4555555555 777777654322 2223455555556664444567776
Q ss_pred -EecCCcc-eEEE
Q 013282 422 -VWDRTYG-SLLE 432 (446)
Q Consensus 422 -~~D~~~~-~~l~ 432 (446)
..|+.+. .|++
T Consensus 320 sFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 320 SFYDKKIRQLWLH 332 (339)
T ss_pred eccccceeeeeee
Confidence 4566533 4443
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.4e-11 Score=119.54 Aligned_cols=210 Identities=14% Similarity=0.091 Sum_probs=135.7
Q ss_pred cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC--CcEEEEecCcceeeEeeeCCCCeeEEEECCC
Q 013282 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 287 (446)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 287 (446)
.|.++|.+..... .+ ..+...+....| +|+|+.+++++..+ ..|.+|++.+++..........+....|+|+
T Consensus 180 ~l~~~d~~g~~~~---~l-~~~~~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGARAV---TL-LQSREPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCCCce---EE-ecCCCceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC
Confidence 3666666543321 22 233445555555 99998655555443 3689999988876554445555667899999
Q ss_pred CCEEEEE-ecCC--cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCcceEEEecCC
Q 013282 288 GKLLIIV-GDNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGNL 361 (446)
Q Consensus 288 ~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~--~v~iwd~~~~~~~~~~~~~~~ 361 (446)
|+.|+.. ..++ .|+++|+.+++.. .+..+........|+|+|+.|+..+. ++ .|.++++.. ++ ...+....
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~lt~~~ 330 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AERVTFVG 330 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecCC
Confidence 9988754 3344 6888999887643 45555556677899999998877664 33 466677743 33 33332222
Q ss_pred CceEEEEEccCCCEEEEEeCC-C--eEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 362 GAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 362 ~~v~~l~~s~dg~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.......|+|+|++|+..+.. + .|.+||+.++... .+. .........|+|+|+.|+.++.++....+
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 234467899999999877653 2 5889999887543 232 22233457899999999887766543333
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.8e-11 Score=118.92 Aligned_cols=211 Identities=18% Similarity=0.132 Sum_probs=133.1
Q ss_pred cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC--cEEEEecCcceeeEeeeCCCCeeEEEECCC
Q 013282 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 287 (446)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 287 (446)
.|.+++.+..... ........+....| +|+|+.++++...++ .|++||+.+++.......+......+|+||
T Consensus 199 ~l~i~d~dG~~~~----~l~~~~~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNEQ----MLLRSPEPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCce----EeecCCCcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC
Confidence 5666666444322 22233445555655 999997666554444 588889988776444334444567899999
Q ss_pred CCEEEEE-ecCCc--EEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CCc--EEEEEccCCCcceEEEecCC
Q 013282 288 GKLLIIV-GDNPD--GLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKT--CRIWDLRNLSESVAVLKGNL 361 (446)
Q Consensus 288 ~~~l~~~-~~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~~--v~iwd~~~~~~~~~~~~~~~ 361 (446)
|+.|+.. +.++. |+++|+.+++. ..+..+.......+|+|+|+.|+..+. ++. |.++|+.. ++ ...+....
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~Lt~~g 349 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRLTFEG 349 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEEecCC
Confidence 9988654 45554 88889887764 445555556678899999998877664 444 55566643 33 33333222
Q ss_pred CceEEEEEccCCCEEEEEeCC-C--eEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 362 GAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 362 ~~v~~l~~s~dg~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
......+|+|||++|+..+.. + .|.++|+.++... .+... .......|+|+|+.|+....++....+.
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 234467999999998876653 3 4666788877543 23222 1223468999999988777665444333
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=5.4e-12 Score=119.23 Aligned_cols=173 Identities=17% Similarity=0.134 Sum_probs=146.4
Q ss_pred CCeEEEEEeCCCcEEEEecCcceeeEeee----CCCCeeEEEEC------C--------------CCCEEEEEecCCcEE
Q 013282 246 GAVHFTASNNDCGVRDFDMGKYQLSKHFR----FPWPVNHSSQS------P--------------DGKLLIIVGDNPDGL 301 (446)
Q Consensus 246 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~s------p--------------~~~~l~~~~~d~~i~ 301 (446)
+..+++....||.+|+|+...++....|. ..+...+..|. | +-..++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 33478889999999999999988877776 23444455442 1 234678888999999
Q ss_pred EEECCCCceEEEec--CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEE
Q 013282 302 LVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379 (446)
Q Consensus 302 i~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 379 (446)
+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+... ...++.+.+....+.+++.+|||..|++|
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 99999999888886 5999999999999999999999999999999965 78888888888889999999999999887
Q ss_pred eCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCC-----CCcEEEE
Q 013282 380 EPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPD-----TESLFIG 421 (446)
Q Consensus 380 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spd-----g~~l~~~ 421 (446)
+ ++|++||+.+++.+..+.+|.++|++++|.-. |.+++++
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 5 67999999999999999999999999999877 6666543
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.8e-11 Score=117.46 Aligned_cols=213 Identities=16% Similarity=0.164 Sum_probs=138.3
Q ss_pred eEEEEEe--CCcEEEEeccC---CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC--cEEEEe
Q 013282 191 QVSTLAV--KDKLLVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFD 263 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg--~v~iwd 263 (446)
.+...+| +|+.|+..+.+ ..|.+|++.++... .+ ....+.+.... |+|+|+.++++.+.+| .|++||
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---~l-~~~~g~~~~~~--~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---QI-TNFEGLNGAPA--WSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---Ec-cCCCCCcCCeE--ECCCCCEEEEEEccCCCceEEEEE
Confidence 3555555 88888876544 36888998766432 12 12223334444 4999997666766665 588889
Q ss_pred cCcceeeEeeeCCCCeeEEEECCCCCEEEEEec-C--CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCC-
Q 013282 264 MGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD-N--PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD- 339 (446)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d- 339 (446)
+.+++......+........|+|+|+.++..+. + ..|+++++.+++... +..........+|+|+|+.|+..+..
T Consensus 274 ~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 274 LASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred CCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccC
Confidence 988876554445555667899999998877664 2 368888888777433 22122334457899999999887753
Q ss_pred C--cEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCC---CeEEEEEcCCCeeEeEeeccccCeEEEEEcCC
Q 013282 340 K--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---DFVHVYDVKSGYEKEQEIDFFGEISGISFSPD 414 (446)
Q Consensus 340 ~--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~spd 414 (446)
+ .|.+||+.. +. ...+.. ........|+|+|+.|+.++.+ ..|.++++.. .....+..+.+.+...+|+|-
T Consensus 353 ~~~~l~~~dl~t-g~-~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 353 GNFHVAAQDLQR-GS-VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceEEEEEECCC-CC-EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 3 478889854 33 333332 2233466899999998877654 3577778753 344445555667778888873
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.5e-11 Score=119.28 Aligned_cols=212 Identities=19% Similarity=0.190 Sum_probs=135.4
Q ss_pred EEEEEe--CCcEEEEeccC-C--cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCc--EEEEec
Q 013282 192 VSTLAV--KDKLLVAGGFQ-G--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG--VRDFDM 264 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~--v~iwd~ 264 (446)
+.+..| +|+.|+..+.+ + .|.+|++.++... .+. ...+...... |+|+|+.++++.+.++. |+++|+
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---~lt-~~~g~~~~~~--wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---KVT-SFPGINGAPR--FSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---Eec-CCCCCcCCee--ECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 444444 88888876543 3 5888888765432 111 1122233444 49999977777777775 777888
Q ss_pred CcceeeEeeeCCCCeeEEEECCCCCEEEEEec-C--CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CC
Q 013282 265 GKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD-N--PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DK 340 (446)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~ 340 (446)
.+++......+.......+|+|||+.|+..+. + ..|+++|+.+++... +..........+|+|+|++|+..+. ++
T Consensus 294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCC
Confidence 88776554445555678899999998877654 2 357777888776543 3222223345789999999887765 34
Q ss_pred c--EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCC-C--eEEEEEcCCCeeEeEeeccccCeEEEEEcCC
Q 013282 341 T--CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEISGISFSPD 414 (446)
Q Consensus 341 ~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~spd 414 (446)
. |.++|+.. +. ...+... .......|+|+|+.|+..+.+ + .+++++. +|.....+..+.+.+...+|+|-
T Consensus 373 ~~~I~~~dl~~-g~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 373 KFNIARQDLET-GA-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEEEEEECCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 3 45567644 33 3334322 123356899999988776643 3 3777886 45556666666677888899873
No 244
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-11 Score=125.72 Aligned_cols=237 Identities=11% Similarity=0.021 Sum_probs=155.4
Q ss_pred CeEEEecCCeEEEEecCCCCce-EEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEEcCCC
Q 013282 143 HDVYLMSHFSVIHWSSLTSSRS-QVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRP 219 (446)
Q Consensus 143 ~~v~~~~~~~i~~w~~~~~~~~-~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~ 219 (446)
.-+..+.||.|++|+...-... ..+.. .+.-+..+.++.++.. .++.+|.|+.||.|++.+++..
T Consensus 1063 ~FvsgS~DGtVKvW~~~k~~~~~~s~rS------------~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1063 LFVSGSDDGTVKVWNLRKLEGEGGSARS------------ELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred eEEEecCCceEEEeeehhhhcCcceeee------------eEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 3455577999999997443221 11110 0111112335666555 8999999999999999999873
Q ss_pred Cee----eEEEEeec-CCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee---CCCCeeEEEECCCCCEE
Q 013282 220 GVS----FCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWPVNHSSQSPDGKLL 291 (446)
Q Consensus 220 ~~~----~~~~~~~~-~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l 291 (446)
... .+.+.... ..+.+..+.-+-...+...++.+..-+.|..||+.+......++ ..+.|++++.+|-++++
T Consensus 1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wl 1210 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWL 1210 (1431)
T ss_pred ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEE
Confidence 211 11222222 22333333322123333367788888999999998877666655 35679999999999999
Q ss_pred EEEecCCcEEEEECCCCceEEEec-CCCCceeEEEECCC---CCEEEEEeC--CCcEEEEEccCCCcceEEEecC-----
Q 013282 292 IIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPN---GVTFATGNQ--DKTCRIWDLRNLSESVAVLKGN----- 360 (446)
Q Consensus 292 ~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~p~---~~~l~sgs~--d~~v~iwd~~~~~~~~~~~~~~----- 360 (446)
++|+..|.+.+||++-+.++.... ++..++..+..+|- ....++++. .+.|.+|++.+ +.+..++-..
T Consensus 1211 viGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~p~ 1289 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGAPI 1289 (1431)
T ss_pred EEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCCcc
Confidence 999999999999999888888775 35578888888872 245555544 67899999966 4444443221
Q ss_pred --------------CCceEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 013282 361 --------------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 361 --------------~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~ 392 (446)
.-......+..-+.++.+|+.|..|+.||...
T Consensus 1290 ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1290 LSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred hhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 11122233344456889999999999999754
No 245
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=5.4e-10 Score=100.31 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=157.9
Q ss_pred EEEEEeCCcEEEEecc---CCcEEEEEcCCC-CeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-
Q 013282 192 VSTLAVKDKLLVAGGF---QGELICKHLDRP-GVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK- 266 (446)
Q Consensus 192 v~~l~~~~~~l~tg~~---dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~- 266 (446)
-.++..+.++|.++-. .|.|..|.++.. +.................+++ +++|+.++.+....|.|.++-+..
T Consensus 44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~d 121 (346)
T COG2706 44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQAD 121 (346)
T ss_pred eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEE--CCCCCEEEEEEccCceEEEEEcccC
Confidence 3344447778888755 478888888764 322211111122233366666 999987666667889999998854
Q ss_pred cee---eEeeeCCCC----------eeEEEECCCCCEEEEEec-CCcEEEEECCCCceEEE----ecCCCCceeEEEECC
Q 013282 267 YQL---SKHFRFPWP----------VNHSSQSPDGKLLIIVGD-NPDGLLVDSMTGKTIAS----LCGHLDFSFASAWHP 328 (446)
Q Consensus 267 ~~~---~~~~~~~~~----------v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~----~~~~~~~v~~~~~~p 328 (446)
|.+ +..+.|.++ +.+..+.|++++|++..- --.|.+|++..|++... ++ ....-..|.|||
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHp 200 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHP 200 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcC
Confidence 443 344446555 888999999999988752 34799999997765332 22 334558899999
Q ss_pred CCCEEEEEeC-CCcEEEEEccCCCcceEEEecC---------CCceEEEEEccCCCEEEEEeC-CCeEEEEEcCC--Cee
Q 013282 329 NGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGN---------LGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKS--GYE 395 (446)
Q Consensus 329 ~~~~l~sgs~-d~~v~iwd~~~~~~~~~~~~~~---------~~~v~~l~~s~dg~~l~~~~~-dg~i~iwd~~~--~~~ 395 (446)
++++....+. +++|.+|........+..++.+ ..+...|..+|||++|.++.. ...|.+|.+.. ++.
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L 280 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL 280 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE
Confidence 9999988776 9999999996533333333221 235678999999999987654 34688887654 322
Q ss_pred --EeEeeccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 396 --KEQEIDFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 396 --~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
+.....+......+.|+|.|++|+++..+...
T Consensus 281 ~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 281 ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred EEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 11222233448899999999999999887765
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=7.1e-12 Score=118.46 Aligned_cols=191 Identities=13% Similarity=0.110 Sum_probs=153.8
Q ss_pred CcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEe----CC-------------CCCeEEEEEeCCCcEEE
Q 013282 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG----SP-------------SGAVHFTASNNDCGVRD 261 (446)
Q Consensus 199 ~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~----s~-------------~~~~~l~s~s~dg~v~i 261 (446)
..++|....||.+++|+...+.....+.....-.+...+..|.. +| .+...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 46889999999999999988765543333333333333333221 11 33447888889999999
Q ss_pred EecCcceeeEeee---CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC
Q 013282 262 FDMGKYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ 338 (446)
Q Consensus 262 wd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~ 338 (446)
+++..++....+. |.++|+++.++.+-..|.+++.|..+..|+...++.++.+++....+.+++.+|+|..+++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 9999999988887 899999999999999999999999999999999999999999899999999999999999987
Q ss_pred CCcEEEEEccCCCcceEEEecCCCceEEEEEccC-----CCEEEE-EeCCCeEEEEEcCC
Q 013282 339 DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-----GRYMAT-AEPADFVHVYDVKS 392 (446)
Q Consensus 339 d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~d-----g~~l~~-~~~dg~i~iwd~~~ 392 (446)
++|++||+.+ .+.+.+|.+|.++|++++|..+ |.++.+ +..+..|.+|-+..
T Consensus 164 -~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 -RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5799999965 8999999999999999999887 665554 44555677786543
No 247
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=7.2e-13 Score=122.07 Aligned_cols=266 Identities=13% Similarity=0.190 Sum_probs=192.3
Q ss_pred CCeEEEEecCCCCceEEEec-CCCCCCCCCCCCCccccCccceEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEE
Q 013282 150 HFSVIHWSSLTSSRSQVLNV-SGHVAPSEKHPGSLLEGFTQTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRT 227 (446)
Q Consensus 150 ~~~i~~w~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~ 227 (446)
+..|++|+-.+++. .+++ .||... +. +-.-|-+ +.+.|++++.||.|++=.+...+.......
T Consensus 163 D~~vv~WdW~~~~~--~l~f~SGH~~N-------vf------QaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r 227 (559)
T KOG1334|consen 163 DLQVVVWDWVSGSP--KLSFESGHCNN-------VF------QAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR 227 (559)
T ss_pred cceEEeehhhccCc--ccccccccccc-------hh------hhhccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence 45678999887743 3332 233211 00 1222222 668899999999999988876665544566
Q ss_pred eecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee----CCC---CeeEEEECCC-CCEEEEEecCCc
Q 013282 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR----FPW---PVNHSSQSPD-GKLLIIVGDNPD 299 (446)
Q Consensus 228 ~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~---~v~~~~~sp~-~~~l~~~~~d~~ 299 (446)
...|.+.|..+++ -|....-|.+++.|+.|.-+|+.+..+...+. ... ....++..|- ...+++++.+..
T Consensus 228 l~~h~g~vhklav--~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf 305 (559)
T KOG1334|consen 228 LAPHEGPVHKLAV--EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF 305 (559)
T ss_pred cccccCccceeee--cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence 7788999999988 78888889999999999999998766544443 222 4678889994 458899999999
Q ss_pred EEEEECCCCc------eEEEecC------CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCC-C----------cce-E
Q 013282 300 GLLVDSMTGK------TIASLCG------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL-S----------ESV-A 355 (446)
Q Consensus 300 i~i~d~~~~~------~~~~~~~------~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~-~----------~~~-~ 355 (446)
+++||.+.-. .+.++.. ....|++++|+.++.-|++.-.|-.|+++.-... + ..+ +
T Consensus 306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~ 385 (559)
T KOG1334|consen 306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR 385 (559)
T ss_pred hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccch
Confidence 9999987422 2333332 2346899999977766666667778999843211 1 112 2
Q ss_pred EEecCCC--ceEEEE-EccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEE
Q 013282 356 VLKGNLG--AIRSIR-YTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 432 (446)
Q Consensus 356 ~~~~~~~--~v~~l~-~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~ 432 (446)
.+++|.. .|..+- |-|...|+++|+.-|.|.||+-.+++.+.-+.+-..-|+||.-+|--..||+++-|..|++|--
T Consensus 386 vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 386 VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred hhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 3778865 355554 4788899999999999999999888877666665558999999999999999999999998854
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=2.1e-11 Score=107.95 Aligned_cols=235 Identities=14% Similarity=0.207 Sum_probs=155.5
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCe-ee-EEEEeecCC------------CceeeEEEEeCCCCCeEEEEEe
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV-SF-CSRTTYDDN------------AITNAVEIYGSPSGAVHFTASN 254 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~-~~-~~~~~~~~~------------~~v~~i~~~~s~~~~~~l~s~s 254 (446)
-|+++.+ .|.+|++|..+|.|.++.-..... .+ ....++.|. ..|+.+.+....+.. .++...
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a-~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA-EFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-EEEEec
Confidence 4788888 899999999999999997544332 11 112222232 346677774333333 577777
Q ss_pred CCCcEEEEecCcce-----------------------------------eeEeee--CCCCeeEEEECCCCCEEEEEecC
Q 013282 255 NDCGVRDFDMGKYQ-----------------------------------LSKHFR--FPWPVNHSSQSPDGKLLIIVGDN 297 (446)
Q Consensus 255 ~dg~v~iwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d 297 (446)
+|.+|++|.+.... +.+.+. |+.-|+++.++.|...++++ +|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 99999999764211 122222 56668999999998888876 46
Q ss_pred CcEEEEECC-CCce--EEEecCCC-----CceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCcceE-------------
Q 013282 298 PDGLLVDSM-TGKT--IASLCGHL-----DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVA------------- 355 (446)
Q Consensus 298 ~~i~i~d~~-~~~~--~~~~~~~~-----~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~~~~~~------------- 355 (446)
-.|.+|++. +.+. +.-++.+. .-|++..||| ..++|+-.+..|+|++.|+|...-+-.
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 689999987 3332 23334332 4588999999 557888888899999999985322111
Q ss_pred --EEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCC-CeeEeEeecccc---------------CeEEEEEcCCCCc
Q 013282 356 --VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS-GYEKEQEIDFFG---------------EISGISFSPDTES 417 (446)
Q Consensus 356 --~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~---------------~v~~~~~spdg~~ 417 (446)
-+..--..|..+.|+++|++|++-.. -+|++||+.. .+++..+.-|.. .-..++|+-++.+
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 11112236888999999999986543 5699999943 444544443431 1235789988889
Q ss_pred EEEEEecCCcc
Q 013282 418 LFIGVWDRTYG 428 (446)
Q Consensus 418 l~~~~~D~~~~ 428 (446)
+++|+.....+
T Consensus 344 v~TGsy~n~fr 354 (433)
T KOG1354|consen 344 VMTGSYNNVFR 354 (433)
T ss_pred EecccccceEE
Confidence 99998765443
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=2.2e-11 Score=114.57 Aligned_cols=186 Identities=15% Similarity=0.225 Sum_probs=138.3
Q ss_pred CCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee------------------------------------
Q 013282 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR------------------------------------ 274 (446)
Q Consensus 231 ~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~------------------------------------ 274 (446)
+....+.|.+ +|+|..++++|..--.|++||+..-.+...-.
T Consensus 50 ~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 50 MPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred CccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 4455667777 99999999999999999999987533211100
Q ss_pred ----CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 013282 275 ----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 350 (446)
Q Consensus 275 ----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~ 350 (446)
-+..-..++++.-..-|++++....|+-+++..|+.+..+....+.+.++..+|...+|++|+.+|.|..||.|.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~- 206 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD- 206 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh-
Confidence 011122344443334455666667899999999999999988889999999999889999999999999999987
Q ss_pred CcceEEEe------cCCC-----ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccc--cCeEEEEEcCCC--
Q 013282 351 SESVAVLK------GNLG-----AIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF--GEISGISFSPDT-- 415 (446)
Q Consensus 351 ~~~~~~~~------~~~~-----~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~spdg-- 415 (446)
...+.++. .|.+ .|+++.|+.+|-.+++|+..|.|.|||+++.+++.. ..|. -+|..+.|.+.+
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCC
Confidence 44444443 2333 499999999999999999999999999998866543 3454 478899998763
Q ss_pred CcEEE
Q 013282 416 ESLFI 420 (446)
Q Consensus 416 ~~l~~ 420 (446)
..|++
T Consensus 286 ~~v~S 290 (703)
T KOG2321|consen 286 NKVVS 290 (703)
T ss_pred ceEEe
Confidence 34443
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=5.7e-12 Score=126.15 Aligned_cols=191 Identities=17% Similarity=0.192 Sum_probs=149.9
Q ss_pred EEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCce-eeEEEEeCCCCCeEEEEEeCCCcEEEEecC-cceeeEe
Q 013282 195 LAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAIT-NAVEIYGSPSGAVHFTASNNDCGVRDFDMG-KYQLSKH 272 (446)
Q Consensus 195 l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v-~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~-~~~~~~~ 272 (446)
+.++...++.++.+..+.+|+....... ..+........ .++-+-.+++ ...+++|+--+.|.+|+.. +..+...
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~--~~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVL--SKIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCcee--hhcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccccCCccee
Confidence 3347788999999999999998765432 12211111111 1222223444 4478999999999999986 3334444
Q ss_pred eeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEE-EecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 013282 273 FRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 351 (446)
Q Consensus 273 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~ 351 (446)
..|.+.|..+.++-+|.++++.++|.++++|++.+++... ..-+|+..|..++|+|+ .++|++.|.++++|+. + +
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~-~ 247 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-N-G 247 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-c-c
Confidence 4599999999999999999999999999999999887766 66689999999999998 8999999999999977 3 5
Q ss_pred cceEEEecCCC-ceEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 013282 352 ESVAVLKGNLG-AIRSIRYTSDGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 352 ~~~~~~~~~~~-~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~ 392 (446)
..+.++.+|.+ .+..++..+....+++++.|+.+++|++..
T Consensus 248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 66778888764 689999999999999999999999999764
No 251
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.41 E-value=2.4e-10 Score=100.75 Aligned_cols=266 Identities=14% Similarity=0.081 Sum_probs=169.5
Q ss_pred eeEEec-ccCeEEEec-CCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CC-cEEEEeccCC
Q 013282 135 NLVWAT-SKHDVYLMS-HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KD-KLLVAGGFQG 209 (446)
Q Consensus 135 ~l~~~~-~~~~v~~~~-~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~-~~l~tg~~dg 209 (446)
.+.|+. +-+++-.+. +..|.+|+..-..-...+.-. +..+++.+| +| ..|.+..++-
T Consensus 53 yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg------------------~agls~~~WSPdgrhiL~tseF~l 114 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG------------------QAGLSSISWSPDGRHILLTSEFDL 114 (447)
T ss_pred heeeeccceeeeeeeeccceEEEEEeecceeEEEeccC------------------CCcceeeeECCCcceEeeeeccee
Confidence 344554 344444433 567888887554333322211 113666666 77 5677788999
Q ss_pred cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC---------------------------------
Q 013282 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--------------------------------- 256 (446)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d--------------------------------- 256 (446)
.|.||.+.+.... .....+..+..++| +|+|+...+..-.|
T Consensus 115 riTVWSL~t~~~~----~~~~pK~~~kg~~f--~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP 188 (447)
T KOG4497|consen 115 RITVWSLNTQKGY----LLPHPKTNVKGYAF--HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP 188 (447)
T ss_pred EEEEEEeccceeE----EecccccCceeEEE--CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC
Confidence 9999999876432 22233444566666 88887433332222
Q ss_pred --CcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEe--------------------
Q 013282 257 --CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-------------------- 314 (446)
Q Consensus 257 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------- 314 (446)
..+.+||-.-.-.+..+...-.+..++|+|.+++|++|+.|+.+++.+--+-++...+
T Consensus 189 dg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 189 DGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred CCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 2233333211111112233456889999999999999999998887654332221111
Q ss_pred ----------------------------------------c------CCCCceeEEEECCCCCEEEEEeC--CCcEEEEE
Q 013282 315 ----------------------------------------C------GHLDFSFASAWHPNGVTFATGNQ--DKTCRIWD 346 (446)
Q Consensus 315 ----------------------------------------~------~~~~~v~~~~~~p~~~~l~sgs~--d~~v~iwd 346 (446)
+ ...-.+.-++|++|..+++|-+. -+.+-+||
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wd 348 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWD 348 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEe
Confidence 1 01123566899999999988764 35799999
Q ss_pred ccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCC
Q 013282 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
+++ .+....+. ...+|+...|.|....|+.+.....+++|-......+ ......-.|..+.|..+|..|+..+.|.-
T Consensus 349 lq~-l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V-~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 349 LQN-LKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV-GVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred chh-hhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE-ecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 976 34333332 3558999999999988888888888999997654433 34444467999999999999999988854
Q ss_pred c
Q 013282 427 Y 427 (446)
Q Consensus 427 ~ 427 (446)
.
T Consensus 426 c 426 (447)
T KOG4497|consen 426 C 426 (447)
T ss_pred E
Confidence 3
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=7.2e-09 Score=98.63 Aligned_cols=260 Identities=18% Similarity=0.202 Sum_probs=158.1
Q ss_pred eeeEEecccCeEEEecC-----CeEEEEecCCC--CceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEE
Q 013282 134 RNLVWATSKHDVYLMSH-----FSVIHWSSLTS--SRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVA 204 (446)
Q Consensus 134 ~~l~~~~~~~~v~~~~~-----~~i~~w~~~~~--~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~t 204 (446)
..+.+......+|.... +.|..|..... ....+-...- .+..-+.+++ ++++|++
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~----------------~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS----------------GGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE----------------SSSCEEEEEECTTSSEEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc----------------CCCCcEEEEEecCCCEEEE
Confidence 44556667777777643 46766665443 2222221110 0012334455 8888888
Q ss_pred ec-cCCcEEEEEcCCCCeeeEEE-Eee----------cCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce--ee
Q 013282 205 GG-FQGELICKHLDRPGVSFCSR-TTY----------DDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ--LS 270 (446)
Q Consensus 205 g~-~dg~i~vw~~~~~~~~~~~~-~~~----------~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~--~~ 270 (446)
+. .+|.|.++++...+...... ... ........+.+ +|+|+.++++.-....|++|++.... +.
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 76 48999999998865433221 221 01122344555 99999766666556689999987644 32
Q ss_pred --Eee--eCCCCeeEEEECCCCCEEEEEe-cCCcEEEEECC--CCce--EEEecC----C--CCceeEEEECCCCCEEEE
Q 013282 271 --KHF--RFPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSM--TGKT--IASLCG----H--LDFSFASAWHPNGVTFAT 335 (446)
Q Consensus 271 --~~~--~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~--~~~~--~~~~~~----~--~~~v~~~~~~p~~~~l~s 335 (446)
..+ ......+.++|+|+++++.+.. .++.|.++++. +++. +..+.. . ......++++|+|++|++
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 222 3556689999999999886655 57889999887 4432 222221 1 125788999999999988
Q ss_pred EeC-CCcEEEEEccCC-C--cceEEEecCCCceEEEEEccCCCEEEEEeC-CCeEEEEEc--CCCeeEeEee-ccccCeE
Q 013282 336 GNQ-DKTCRIWDLRNL-S--ESVAVLKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDV--KSGYEKEQEI-DFFGEIS 407 (446)
Q Consensus 336 gs~-d~~v~iwd~~~~-~--~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~iwd~--~~~~~~~~~~-~~~~~v~ 407 (446)
+.. .++|.+|++... + +.+..+.......+.++++|+|++|+++.. ++.|.+|++ .+|.....-. ..-....
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 775 678999999432 2 233344443445889999999999998874 568999865 5675443332 2334566
Q ss_pred EEEE
Q 013282 408 GISF 411 (446)
Q Consensus 408 ~~~~ 411 (446)
||.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7766
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=1.1e-11 Score=124.21 Aligned_cols=228 Identities=12% Similarity=0.042 Sum_probs=169.2
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 277 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (446)
.+.++++|..-+.+.+-....... ... ...+....+ .-... .++.++.+..+.+||...+.....+.++.
T Consensus 60 ~~~~~v~~~~~~~v~~~~~~~~~~----~~~---s~wi~g~~l--~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~e 129 (967)
T KOG0974|consen 60 LSGKIVTCAKSDEVYVKEASNQII----ERF---SDWIFGAKL--FEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDE 129 (967)
T ss_pred ccceEEEEEeecceeecchhhhhh----hhc---cccccccch--hhhcc-eEEEEEcCceEEEEecccCceehhcCCCc
Confidence 355667776666665544332211 111 111222222 22333 57777888999999998888777776544
Q ss_pred Cee-----EEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCc
Q 013282 278 PVN-----HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 352 (446)
Q Consensus 278 ~v~-----~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~ 352 (446)
.+. -+.++++.-++++|+--+.|.+|+..-.+.-..+.+|.+.|+++.|+-+|+++++.|.|.++|+|++.+...
T Consensus 130 r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 130 RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred eEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc
Confidence 322 233567777889999999999999874333336889999999999999999999999999999999977444
Q ss_pred ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeecccc-CeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 353 SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 353 ~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
...+.-+|+..|..+.|.|+ .+++++.|-+.++|+.. +..+..+..|.+ .|..++..++...+++++.|++++.+.
T Consensus 210 ~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 210 LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred cCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 44477789999999999998 89999999999999754 445556777764 699999999999999999999998876
Q ss_pred EEecccC
Q 013282 432 EYGRCRN 438 (446)
Q Consensus 432 ~~~~~~~ 438 (446)
...|...
T Consensus 287 l~~r~~e 293 (967)
T KOG0974|consen 287 LNGRGLE 293 (967)
T ss_pred hhccccc
Confidence 6665543
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=3.4e-12 Score=133.56 Aligned_cols=214 Identities=14% Similarity=0.158 Sum_probs=157.5
Q ss_pred EEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee
Q 013282 192 VSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~ 269 (446)
|.+|.- ...+.+||+.||.|++|.+..+....|.++... +.|+.+.| +..|+. +..+..||.+.+|.+. .++
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f--~~qGnk-~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRF--NHQGNK-FGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhh--cccCCc-eeeeccCCceeecccC-Ccc
Confidence 445544 567889999999999999988887776665433 66777766 888874 7778899999999987 445
Q ss_pred eEeee-CCCCeeEEEECCCCCEEEEEe---cCCcEEEEECCC-C--ceEEEecCCCCceeEEEECCCCCEEEEEeCCCcE
Q 013282 270 SKHFR-FPWPVNHSSQSPDGKLLIIVG---DNPDGLLVDSMT-G--KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTC 342 (446)
Q Consensus 270 ~~~~~-~~~~v~~~~~sp~~~~l~~~~---~d~~i~i~d~~~-~--~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v 342 (446)
....+ |....+.++|-. ..+++++ +++.+.+||..- + ..++ +.|.+.++++++.|..++|++|+.+|.|
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcE
Confidence 44444 777788888764 5566654 578999999752 2 2344 7899999999999999999999999999
Q ss_pred EEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec-c--cc--CeEEE-EEcCCCC
Q 013282 343 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID-F--FG--EISGI-SFSPDTE 416 (446)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~--~~--~v~~~-~~spdg~ 416 (446)
++||+|. .+.++.++. +. ...++++|+..|.|+||++.....+..+.. | .+ ...+. .+--.+.
T Consensus 2361 ~l~D~rq-rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~n 2429 (2439)
T KOG1064|consen 2361 CLFDIRQ-RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCN 2429 (2439)
T ss_pred EEeehHH-HHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCc
Confidence 9999976 666666654 34 456899999999999999987765555443 1 11 11111 1222355
Q ss_pred cEEEEEecCC
Q 013282 417 SLFIGVWDRT 426 (446)
Q Consensus 417 ~l~~~~~D~~ 426 (446)
.|++|+.|++
T Consensus 2430 rifsCgad~~ 2439 (2439)
T KOG1064|consen 2430 RIFSCGADGT 2439 (2439)
T ss_pred eEEEecCCCC
Confidence 6788888864
No 255
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=1.1e-09 Score=104.27 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=130.6
Q ss_pred EEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeE
Q 013282 202 LVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNH 281 (446)
Q Consensus 202 l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~ 281 (446)
+++-..+|+|.|.|..+.+... .+.........+. ++|+|+. +++++.||.|.++|+.+.+.+..+........
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~---~i~~~~~~h~~~~--~s~Dgr~-~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVA---RIPTGGAPHAGLK--FSPDGRY-LYVANRDGTVSVIDLATGKVVATIKVGGNPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEE---EEE-STTEEEEEE---TT-SSE-EEEEETTSEEEEEETTSSSEEEEEE-SSEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEE---EEcCCCCceeEEE--ecCCCCE-EEEEcCCCeEEEEECCcccEEEEEecCCCcce
Confidence 4566778999999998876543 2222222222233 4999984 66677899999999999999999997777899
Q ss_pred EEECCCCCEEEEEe-cCCcEEEEECCCCceEEEecCC-------CCceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCc
Q 013282 282 SSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIASLCGH-------LDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSE 352 (446)
Q Consensus 282 ~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~l~sgs~-d~~v~iwd~~~~~~ 352 (446)
+++||||++++++. ..+.+.++|.++.++++.+... ...+.++..+|....++..-. .+.|-+.|......
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999998775 6899999999999999887532 346778888888886665555 47788888866433
Q ss_pred ceEEEecCCCceEEEEEccCCCEEEEE-eCCCeEEEEEcCCCeeEeEe
Q 013282 353 SVAVLKGNLGAIRSIRYTSDGRYMATA-EPADFVHVYDVKSGYEKEQE 399 (446)
Q Consensus 353 ~~~~~~~~~~~v~~l~~s~dg~~l~~~-~~dg~i~iwd~~~~~~~~~~ 399 (446)
................|+|+|++++.+ ...+.|-++|.++++....+
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 333333334467789999999987665 45678999999988765543
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.5e-09 Score=106.00 Aligned_cols=211 Identities=14% Similarity=0.077 Sum_probs=130.0
Q ss_pred EeCCcE--E-EEeccCC--cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC----cEEEEecCc
Q 013282 196 AVKDKL--L-VAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC----GVRDFDMGK 266 (446)
Q Consensus 196 ~~~~~~--l-~tg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg----~v~iwd~~~ 266 (446)
+++|+. + ++...+| .|.+.++..+... ++. ...+..... .|+|+|+.++++...+| .+.+|++..
T Consensus 193 SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---~lt-~~~g~~~~p--~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 193 MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---KIL-ALQGNQLMP--TFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred ccCCCceEEEEEEccCCCceEEEEECCCCCce---Eee-cCCCCccce--EECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 337654 2 2343343 5777777665432 221 122233334 44999997666664433 344467664
Q ss_pred ---ceeeEeeeCC-CCeeEEEECCCCCEEEEEec-CCc--EEEEECCC-CceEEEecCCCCceeEEEECCCCCEEEEEeC
Q 013282 267 ---YQLSKHFRFP-WPVNHSSQSPDGKLLIIVGD-NPD--GLLVDSMT-GKTIASLCGHLDFSFASAWHPNGVTFATGNQ 338 (446)
Q Consensus 267 ---~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-d~~--i~i~d~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~ 338 (446)
++........ ......+|+|||+.|+..+. +|. |+++++.. +.....+..+...+...+|+|+|+.|+..+.
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 2333333322 33467899999998877663 554 45555542 3344555555566778999999999987765
Q ss_pred C---CcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeC---CCeEEEEEcCCCeeEeEeeccccCeEEEEEc
Q 013282 339 D---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEIDFFGEISGISFS 412 (446)
Q Consensus 339 d---~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 412 (446)
+ ..|.+||+.. ++ ...+......+....|+|||+.|+.... ...|.++|+.+++. ..+....+.+...+|+
T Consensus 347 ~~g~~~I~v~dl~~-g~-~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 347 IKGVRQICVYDLAT-GR-DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKIVIGSGEKRFPSWG 423 (428)
T ss_pred CCCCcEEEEEECCC-CC-eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCcccCceec
Confidence 3 3689999954 43 3444433445678999999998875443 34689999987754 3444455667888999
Q ss_pred CCC
Q 013282 413 PDT 415 (446)
Q Consensus 413 pdg 415 (446)
|-.
T Consensus 424 ~~~ 426 (428)
T PRK01029 424 AFP 426 (428)
T ss_pred CCC
Confidence 854
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.32 E-value=6.8e-09 Score=96.79 Aligned_cols=206 Identities=16% Similarity=0.076 Sum_probs=141.0
Q ss_pred CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEe---------CCCcEEEEecCcceeeEeeeCCCC-
Q 013282 209 GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKYQLSKHFRFPWP- 278 (446)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~- 278 (446)
|+|.+.|..+.+..-... .+ ..+- .+ + +|+|+.+.++.+ .+..|.+||+.+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~--~G-~~P~-~~-~--spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD--GG-FLPN-PV-V--ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEE--cc-CCCc-ee-E--CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 889999998875442221 22 2222 23 4 999997777777 789999999999999988884333
Q ss_pred -------eeEEEECCCCCEEEEEe-c-CCcEEEEECCCCceEEEecCCC------------------C------------
Q 013282 279 -------VNHSSQSPDGKLLIIVG-D-NPDGLLVDSMTGKTIASLCGHL------------------D------------ 319 (446)
Q Consensus 279 -------v~~~~~sp~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~------------------~------------ 319 (446)
...++++|||++|++.. . +..|.++|+.+++.+..+.-.. +
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 23789999999998776 3 7899999999988776542100 0
Q ss_pred -ceeEE--------------EECC-CCCEEEEEeCCCcEEEEEccCC----CcceEEEec-------CCCceEEEEEccC
Q 013282 320 -FSFAS--------------AWHP-NGVTFATGNQDKTCRIWDLRNL----SESVAVLKG-------NLGAIRSIRYTSD 372 (446)
Q Consensus 320 -~v~~~--------------~~~p-~~~~l~sgs~d~~v~iwd~~~~----~~~~~~~~~-------~~~~v~~l~~s~d 372 (446)
.+... .|.+ +|+++..... |+|.+.|+... ......+.. ..+.+.-++++|+
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 01111 1223 6777766665 99999996331 122222211 2234445999999
Q ss_pred CCEEEEEe----------CCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCC-cEEEEEe
Q 013282 373 GRYMATAE----------PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE-SLFIGVW 423 (446)
Q Consensus 373 g~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~ 423 (446)
|+.|+++. ..+.|.++|+.+++.+..+. -...+.+++|+|||+ +|++...
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCC
Confidence 99888743 22579999999998887766 345789999999999 8887763
No 258
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=5.5e-09 Score=101.37 Aligned_cols=188 Identities=12% Similarity=0.026 Sum_probs=123.9
Q ss_pred EEEeCCCCCe-EEEEEeC--CCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEe---cCCcEEEEECCCCceEE
Q 013282 239 EIYGSPSGAV-HFTASNN--DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG---DNPDGLLVDSMTGKTIA 312 (446)
Q Consensus 239 ~~~~s~~~~~-~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~i~d~~~~~~~~ 312 (446)
.-.|+|+|+. ++++... ...|+++|+.+++.......++......|+|||+.++... .+..|+++|+.+++. .
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E
Confidence 3445999985 3434333 3569999999888766666666677889999999776543 245788889887764 4
Q ss_pred EecCCCCceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCC-------
Q 013282 313 SLCGHLDFSFASAWHPNGVTFATGNQ-DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA------- 382 (446)
Q Consensus 313 ~~~~~~~~v~~~~~~p~~~~l~sgs~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d------- 382 (446)
.+..+........|+|+|+.|+..+. .+ .|.+.|+.. +.. +.+... +. ....|+|+|++|+..+..
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~-g~-~~~~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFH-GK-NNSSVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccC-CC-cCceECCCCCEEEEEEcCCCcccCC
Confidence 45544443445689999998877764 33 577777743 333 222221 11 134899999988876643
Q ss_pred --CeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEEE
Q 013282 383 --DFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEY 433 (446)
Q Consensus 383 --g~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~ 433 (446)
..|.+.|+.++.. ..+... +......|+|||+.|+.....+....+..+
T Consensus 347 ~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 347 NTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred CCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 2688889888753 334332 233468999999998877666554444433
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.23 E-value=9.6e-09 Score=95.04 Aligned_cols=144 Identities=18% Similarity=0.166 Sum_probs=113.6
Q ss_pred CCCCeeEEEECCCCCEEEEEecCC-cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNP-DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 353 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~ 353 (446)
++..|.-..+..+++-++.|..|| .+-|+|..+++ +..+...-+.|.++..+|+|++++.+.....+-+.|+.+ +.+
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv 435 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNV 435 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCe
Confidence 344466666666777888898888 89999988775 455666778999999999999999999999999999976 555
Q ss_pred eEEEecCCCceEEEEEccCCCEEEEEeCCC----eEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEE
Q 013282 354 VAVLKGNLGAIRSIRYTSDGRYMATAEPAD----FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 354 ~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
...-+...+-|+.+.|+|+++++|-+-.+| .|+++|+.+++.. ......+.=.+.+|.|+|++|+.-
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy-~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY-DVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE-EecCCcccccCcccCCCCcEEEEE
Confidence 555555667899999999999999998877 5999999987644 333344445567899999998754
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=2.9e-07 Score=83.07 Aligned_cols=217 Identities=12% Similarity=0.169 Sum_probs=142.6
Q ss_pred EEEeCCcEEEEecc-CCcEEEEEcCCCCeeeEEEEeecCCCc----------eeeEEEEeCCCCCeEEEEEeCCCcEEEE
Q 013282 194 TLAVKDKLLVAGGF-QGELICKHLDRPGVSFCSRTTYDDNAI----------TNAVEIYGSPSGAVHFTASNNDCGVRDF 262 (446)
Q Consensus 194 ~l~~~~~~l~tg~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~----------v~~i~~~~s~~~~~~l~s~s~dg~v~iw 262 (446)
++.-++++|+++.. -|.|.++-+...+......-...|.+. +....+ .|+++.++++.-.--.|.+|
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~--tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF--TPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee--CCCCCEEEEeecCCceEEEE
Confidence 33448888888865 478999999776543333222233333 555556 89998544444344569999
Q ss_pred ecCcceeeEe----eeCCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCC-ceEEEecC---------CCCceeEEEEC
Q 013282 263 DMGKYQLSKH----FRFPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTG-KTIASLCG---------HLDFSFASAWH 327 (446)
Q Consensus 263 d~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~---------~~~~v~~~~~~ 327 (446)
++..+++... ++.....+.|.|+|++++..+.+ -+++|.+|..... ..+..++. ...+..+|.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9987765433 23556689999999999986665 4899999998763 33333321 23467789999
Q ss_pred CCCCEEEEEeC-CCcEEEEEccCCCcceEEE---ecCCCceEEEEEccCCCEEEEEeCC-CeEEEEEcC--CCeeEeEee
Q 013282 328 PNGVTFATGNQ-DKTCRIWDLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPA-DFVHVYDVK--SGYEKEQEI 400 (446)
Q Consensus 328 p~~~~l~sgs~-d~~v~iwd~~~~~~~~~~~---~~~~~~v~~l~~s~dg~~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 400 (446)
|+|++|.++.+ ...|.++.+...+..+... ..+....+...|+|.|++|+++..+ +.|.+|... +|+......
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 99999999876 3478888886544433332 2333447899999999999988865 468888554 554332222
Q ss_pred -ccccCeEEEEEc
Q 013282 401 -DFFGEISGISFS 412 (446)
Q Consensus 401 -~~~~~v~~~~~s 412 (446)
.......|+.|.
T Consensus 333 ~~~~p~Pvcv~f~ 345 (346)
T COG2706 333 YAVVPEPVCVKFL 345 (346)
T ss_pred ccCCCCcEEEEEc
Confidence 133456677664
No 261
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=4.2e-10 Score=98.54 Aligned_cols=235 Identities=18% Similarity=0.277 Sum_probs=155.7
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCC---eeeEEEEeecCC------------CceeeEEEEeCCCCCeEEEEE
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG---VSFCSRTTYDDN------------AITNAVEIYGSPSGAVHFTAS 253 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~---~~~~~~~~~~~~------------~~v~~i~~~~s~~~~~~l~s~ 253 (446)
.|+++.+ .|.||++|...|.|.+|.-.... ..+ ...++.|. ..|+.+.++ .+.+...++.+
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf-~teFQshe~EFDYLkSleieEKin~I~w~-~~t~r~hFLls 105 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKF-FTEFQSHELEFDYLKSLEIEEKINAIEWF-DDTGRNHFLLS 105 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhh-hhhhcccccchhhhhhccHHHHhhheeee-cCCCcceEEEe
Confidence 5888888 78999999999999999765443 111 11122332 246777774 56666678888
Q ss_pred eCCCcEEEEecCcce------------------------------------------eeEeee--CCCCeeEEEECCCCC
Q 013282 254 NNDCGVRDFDMGKYQ------------------------------------------LSKHFR--FPWPVNHSSQSPDGK 289 (446)
Q Consensus 254 s~dg~v~iwd~~~~~------------------------------------------~~~~~~--~~~~v~~~~~sp~~~ 289 (446)
++|.+|++|.+.... +.+.+. |+.-|+++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999764320 011111 555688899988877
Q ss_pred EEEEEecCCcEEEEECCCC---ceEEEecCCC-----CceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCcceE-----
Q 013282 290 LLIIVGDNPDGLLVDSMTG---KTIASLCGHL-----DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVA----- 355 (446)
Q Consensus 290 ~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~-----~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~~~~~~----- 355 (446)
.++++ ++-.|.+|++.-. -.+.-++.|. .-|++..||| ....+.-.+..|.|++-|+|...-+..
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77665 5678999998632 1233445553 4578899999 445666777889999999984221111
Q ss_pred ----------EEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe-eEeEeeccc------------cCe---EEE
Q 013282 356 ----------VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFF------------GEI---SGI 409 (446)
Q Consensus 356 ----------~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~------------~~v---~~~ 409 (446)
-+.+-...|..+.|+++|+++++-+. -+|+|||++..+ ++.++.-|. ..| -.+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 11122346888999999999987553 469999998764 444443332 122 347
Q ss_pred EEcCCCCcEEEEEecCCcce
Q 013282 410 SFSPDTESLFIGVWDRTYGS 429 (446)
Q Consensus 410 ~~spdg~~l~~~~~D~~~~~ 429 (446)
.||-|.+.+++|+.....|.
T Consensus 344 sfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred EecCCcccccccccccceee
Confidence 88888888888877766553
No 262
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.21 E-value=2.6e-09 Score=94.91 Aligned_cols=201 Identities=12% Similarity=0.159 Sum_probs=146.4
Q ss_pred CccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCC-eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe
Q 013282 187 FTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPG-VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD 263 (446)
Q Consensus 187 ~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd 263 (446)
+.+.+++++++ +...|+.|-.+|++.-+.+...- .....+....|...+..+-+ +..-. .+++.+.|..+.---
T Consensus 66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if--~~~~e-~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVF--SLTHE-WVLSTGKDKQFAWHC 142 (404)
T ss_pred hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEe--cCCce-eEEEeccccceEEEe
Confidence 34447888888 77889999999999988775432 11223445567777877766 44434 688888887765444
Q ss_pred cCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEEC--CCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCc
Q 013282 264 MGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS--MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKT 341 (446)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~ 341 (446)
.+.+..+..+....+..++.+.-. +..+|...|.|.+..+ ..-.++.++.+|.+.+.+++|.|....|.+|..|..
T Consensus 143 ~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 143 TESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred eccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 555555554443222222222211 4555666666655544 355678899999999999999999999999999999
Q ss_pred EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 013282 342 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~ 392 (446)
+.+||+--.......+.+|...|..+...+--+.|.+++.||.|.+|+++.
T Consensus 221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999654556778889999999999888889999999999999999863
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.7e-09 Score=100.64 Aligned_cols=197 Identities=15% Similarity=0.234 Sum_probs=138.7
Q ss_pred eccCCcEEEEEcCCCCee--eEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC-----------CcEEEEecCcceeeE
Q 013282 205 GGFQGELICKHLDRPGVS--FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----------CGVRDFDMGKYQLSK 271 (446)
Q Consensus 205 g~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d-----------g~v~iwd~~~~~~~~ 271 (446)
+|.-+.|+||........ ...+.+. ....+.+.|++-|.-+|+.++.| .+++++++.+..+.-
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFF----kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFF----KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred CCCCcEEEEeccccccccchhhhcccc----ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 466778999987632211 1111111 12456677788887666655432 468888888666766
Q ss_pred eeeCCCCeeEEEECCCCCEEEEE--ecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC---CCcEEEEE
Q 013282 272 HFRFPWPVNHSSQSPDGKLLIIV--GDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWD 346 (446)
Q Consensus 272 ~~~~~~~v~~~~~sp~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~---d~~v~iwd 346 (446)
.+...++|.++.|+|+++.++++ -.=..+.|+|++ +.++..+. +++=+++-|+|.|++++.++- -|.|-|||
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 77778999999999999888664 356789999976 56666663 566788999999999998775 57899999
Q ss_pred ccCCCcceEEEecCCCceEEEEEccCCCEEEEEeC------CCeEEEEEcCCCeeEeEeeccccCeEEEEEcC
Q 013282 347 LRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP------ADFVHVYDVKSGYEKEQEIDFFGEISGISFSP 413 (446)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 413 (446)
+.+ .+.+..+... .-+-+.|+|||+++++++. |+.++||+.. |..+... ....+...+.|-|
T Consensus 343 v~n-~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~-~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 343 VPN-RKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEK-MFKSELLQVEWRP 410 (566)
T ss_pred ccc-hhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehh-hhhHhHhheeeee
Confidence 977 7778877764 3445799999999998874 5679999965 5444321 1222566777765
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.9e-08 Score=95.03 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=90.8
Q ss_pred CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEE--EeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCE
Q 013282 298 PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT--GNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRY 375 (446)
Q Consensus 298 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s--gs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 375 (446)
.+++++++....+...+. ..++|.++.|+|+|+-+++ |-.=.++.|+|++ +.++..+. .++-+++-|+|.|++
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHGNI 325 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCCCE
Confidence 357777777444444443 5789999999999977665 4456789999995 56666664 567889999999999
Q ss_pred EEEEeC---CCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEec
Q 013282 376 MATAEP---ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 376 l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D 424 (446)
|+.++- -|.|-|||+.+.+++..+.... -+-+.|+|||++++++..-
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEecc
Confidence 988875 4789999999976666554433 3457899999999998654
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=122.16 Aligned_cols=179 Identities=17% Similarity=0.159 Sum_probs=145.4
Q ss_pred EEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee--CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCC
Q 013282 240 IYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 317 (446)
Q Consensus 240 ~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 317 (446)
+..+|... +.++|+.||.|++|....++.+..++ .+..|+.+.|+.+|+.+.++..||.+.+|.+. .++....+.|
T Consensus 2214 ~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qch 2291 (2439)
T KOG1064|consen 2214 MTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCH 2291 (2439)
T ss_pred ecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccC
Confidence 33367766 68899999999999999888888877 55789999999999999999999999999987 6777778889
Q ss_pred CCceeEEEECCCCCEEEEEeC---CCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 013282 318 LDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 394 (446)
Q Consensus 318 ~~~v~~~~~~p~~~~l~sgs~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~ 394 (446)
........|-. ..+++++. ++.+.+||.-.....-..-+.|.+.++++++.|..+.|++|+.+|.|++||++..+
T Consensus 2292 nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2292 NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 88888888865 56777654 67899999855433333337899999999999999999999999999999998765
Q ss_pred eEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEE
Q 013282 395 EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLE 432 (446)
Q Consensus 395 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~ 432 (446)
..+.+.. +. ...++++|+..|.+++|-.
T Consensus 2370 l~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2370 LRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred HHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence 5544332 44 5678889999999988753
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=8.6e-10 Score=106.47 Aligned_cols=230 Identities=14% Similarity=0.077 Sum_probs=163.3
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCe------------eeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGV------------SFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~------------~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d 256 (446)
...|++| ..+++++||.||.++|-.+.+... ....+++.+|++.|..+.| +.+.. .|.++..+
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW--Ne~~Q-KLTtSDt~ 92 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW--NENNQ-KLTTSDTS 92 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe--ccccc-cccccCCC
Confidence 6888999 789999999999999998865431 1123456789999988877 66665 48899999
Q ss_pred CcEEEEecCcceeeEeee---CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceE-EEecCCCCceeEEEECCCCCE
Q 013282 257 CGVRDFDMGKYQLSKHFR---FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-ASLCGHLDFSFASAWHPNGVT 332 (446)
Q Consensus 257 g~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~p~~~~ 332 (446)
|.|.+|-+-.+....... ..+-|.+++|+.+|..+.....||.|.+=.+...+.- +.+++ .....+.|+||.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHH
Confidence 999999987776443322 4566899999999999999999999988766543321 12332 12346889999999
Q ss_pred EEEEeCCCcEEEEEccCCC------cceEEE----ecCCCceEEEEEc--------cCCCEEEEEeCCCeEEEEEcCCCe
Q 013282 333 FATGNQDKTCRIWDLRNLS------ESVAVL----KGNLGAIRSIRYT--------SDGRYMATAEPADFVHVYDVKSGY 394 (446)
Q Consensus 333 l~sgs~d~~v~iwd~~~~~------~~~~~~----~~~~~~v~~l~~s--------~dg~~l~~~~~dg~i~iwd~~~~~ 394 (446)
++.+-.+|.+.+||....- .+.... ......|..+.|. |+...|+.+-.+|.+.|..-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 9999899999999974211 111111 1111234455553 577899999999988887544433
Q ss_pred eEeEeeccccCeEEEEEcCCCCcEEEEEecCC
Q 013282 395 EKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 395 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
.+. +....-.+.++.|+++|..|++++.+..
T Consensus 251 ~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~~d 281 (1189)
T KOG2041|consen 251 EPV-VVDTGMKIVGAKWNHNGAVLAVCGNDSD 281 (1189)
T ss_pred CCe-EEecccEeecceecCCCcEEEEccCccc
Confidence 222 2223356889999999999999976644
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.16 E-value=3.5e-08 Score=91.45 Aligned_cols=225 Identities=14% Similarity=0.141 Sum_probs=155.0
Q ss_pred cccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccc-eEEEEEe-CCcEEEEeccCCcEEEEEcC
Q 013282 140 TSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQT-QVSTLAV-KDKLLVAGGFQGELICKHLD 217 (446)
Q Consensus 140 ~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~-~v~~l~~-~~~~l~tg~~dg~i~vw~~~ 217 (446)
+....+.+...+.|.++|..+.+...+ .+.=++....+.+. + ...+ -....++ +|.+++..+. |+..+.+..
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekl-dI~lpl~rk~k~~k-~---~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~ 349 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKL-DIGLPLDRKKKQPK-F---VNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPW 349 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceee-ecCCcccccccccc-c---cCHHHhhhhhccCCCcEEEEEec-CcEEEECCC
Confidence 344456666778899999888765332 22101110000000 0 0000 1112344 8888888875 667777665
Q ss_pred CCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC-cEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEec
Q 013282 218 RPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD 296 (446)
Q Consensus 218 ~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 296 (446)
.+- .+.-++.+.|....+ ..++. -++.|..|| .+-|+|..+++..+....-+.|.++..+|+|++++++..
T Consensus 350 ~~~-----~iqv~~~~~VrY~r~--~~~~e-~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 350 DGY-----SIQVGKKGGVRYRRI--QVDPE-GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred CCe-----eEEcCCCCceEEEEE--ccCCc-ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC
Confidence 552 222356666877777 44444 478888998 899999999998887777788999999999999999999
Q ss_pred CCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCC----cEEEEEccCCCcceEEEecCCCceEEEEEccC
Q 013282 297 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK----TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD 372 (446)
Q Consensus 297 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~d 372 (446)
...|.++|+.+|+....=+...+-|+..+|||+++++|-+--+| .|+++|+.. ++.... ....+-=.+-+|.|+
T Consensus 422 r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~v-TT~ta~DfsPaFD~d 499 (668)
T COG4946 422 RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDV-TTPTAYDFSPAFDPD 499 (668)
T ss_pred ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEe-cCCcccccCcccCCC
Confidence 99999999999987665566678899999999999999887665 699999954 444333 333333456789999
Q ss_pred CCEEEEEe
Q 013282 373 GRYMATAE 380 (446)
Q Consensus 373 g~~l~~~~ 380 (446)
|++|..-+
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 99887554
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=9.3e-09 Score=96.84 Aligned_cols=232 Identities=14% Similarity=0.139 Sum_probs=139.5
Q ss_pred eEEEEEeCCcEEEEecc-----------CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcE
Q 013282 191 QVSTLAVKDKLLVAGGF-----------QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~-----------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v 259 (446)
+...+++..+||||=+. ...++|||+.++............. .+.. -|.||.+++ +++.-.. .+|
T Consensus 253 q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~-~~WP-~frWS~DdK-y~Arm~~-~si 328 (698)
T KOG2314|consen 253 QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY-LKWP-IFRWSHDDK-YFARMTG-NSI 328 (698)
T ss_pred eeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc-cccc-eEEeccCCc-eeEEecc-ceE
Confidence 45566668899998653 2579999999886554333332222 2222 245688987 4554433 678
Q ss_pred EEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEecC-----CcEEEEEC----------------------CCCceE
Q 013282 260 RDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDN-----PDGLLVDS----------------------MTGKTI 311 (446)
Q Consensus 260 ~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~----------------------~~~~~~ 311 (446)
.||+..+..++..-. ....|....|+|.+++||.-+.. ..+.|..+ ++|..+
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 999887755443322 33457777788777766643210 01111111 111111
Q ss_pred E---------------------Ee---------cCCCCceeEEEECCCCCEEEEEeC---CCcEEEEEccC-CCc--ceE
Q 013282 312 A---------------------SL---------CGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRN-LSE--SVA 355 (446)
Q Consensus 312 ~---------------------~~---------~~~~~~v~~~~~~p~~~~l~sgs~---d~~v~iwd~~~-~~~--~~~ 355 (446)
+ .+ ..-...|...+|-|.|+.+++-+. ..++.+|-+.. ..+ .+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 0 00 012356788999999988776543 45789998862 222 333
Q ss_pred EEecCCCceEEEEEccCCCEEEEEe---CCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcc
Q 013282 356 VLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYG 428 (446)
Q Consensus 356 ~~~~~~~~v~~l~~s~dg~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~ 428 (446)
.+.. ...+.+.|+|.|++++.+. ..|.+.++|+.-......-.......+.+.|.|.|+|+++++.-...+
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc
Confidence 3332 4567899999999998765 468899999875322222222223467899999999999997766543
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=9.1e-08 Score=102.96 Aligned_cols=226 Identities=10% Similarity=0.121 Sum_probs=143.2
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEee-cCC------------CceeeEEEEeCCCCCeEEEEEeCCCcEEEEec
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-DDN------------AITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~-~~~------------~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~ 264 (446)
+++++++-..++.|.+|+.... .. ..... +.. .....+.+ .+++..++++-.....|+++|+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~-~i--~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGN-FI--VQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCC-EE--EEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCCceEEEEec
Confidence 5678888888899999997543 21 11111 111 11344555 7777655555556678999998
Q ss_pred CcceeeEeeeC-----------------CCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceEEEecC---------C
Q 013282 265 GKYQLSKHFRF-----------------PWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKTIASLCG---------H 317 (446)
Q Consensus 265 ~~~~~~~~~~~-----------------~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~ 317 (446)
.++........ -.....++++| ++.++++.+.++.|++||..++... .+.+ +
T Consensus 654 ~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~ 732 (1057)
T PLN02919 654 VNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGS 732 (1057)
T ss_pred CCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCC
Confidence 77654322110 01235789999 5566677778899999999877543 2211 1
Q ss_pred ------CCceeEEEECCCCCEE-EEEeCCCcEEEEEccCCCcceEE------------Eec--------CCCceEEEEEc
Q 013282 318 ------LDFSFASAWHPNGVTF-ATGNQDKTCRIWDLRNLSESVAV------------LKG--------NLGAIRSIRYT 370 (446)
Q Consensus 318 ------~~~v~~~~~~p~~~~l-~sgs~d~~v~iwd~~~~~~~~~~------------~~~--------~~~~v~~l~~s 370 (446)
-.....++++|+|..| ++-+.+++|++||+......+.. +.. .-.....++++
T Consensus 733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 1234579999998844 55556789999998652211110 000 01124588999
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCeeEeEeec--------------cccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 371 SDGRYMATAEPADFVHVYDVKSGYEKEQEID--------------FFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 371 ~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
++|+.+++-..++.|++||..++.... +.+ ....+.+++++++|+.+++-..+.+|..+
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 999988888889999999998875432 222 12357899999999876666666665543
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.12 E-value=6.4e-08 Score=93.64 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=135.6
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCC--ceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA--ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 275 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~--~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 275 (446)
.++.++.++.+|.|..||..++.............. ......+ .+ . .++.+..++.+..+|+.+++.+.....
T Consensus 144 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 144 ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---AD-G-GVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---EC-C-EEEEECCCCEEEEEEccCCCEeeeecc
Confidence 456777788899999999988765443222111000 0011111 12 2 477788889999999999987765442
Q ss_pred CCC--------eeEEEECC--CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 276 PWP--------VNHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 276 ~~~--------v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
..+ +..+.-+| .+..+++++.++.++.+|..+|+.+..... .. ..... ..+..++.++.+|.+..+
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVAL 294 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEE
Confidence 111 01111122 356788888899999999999988776652 11 11122 246678888899999999
Q ss_pred EccCCCcceEEEecC-CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCe-EEEEEcCCCCcEEEEEe
Q 013282 346 DLRNLSESVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SGISFSPDTESLFIGVW 423 (446)
Q Consensus 346 d~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~spdg~~l~~~~~ 423 (446)
|..+ ++.+...... .....+... .+..|++++.+|.|+++|..+|+.+.+...+...+ .+..+. +..|++++.
T Consensus 295 d~~t-G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~ 369 (377)
T TIGR03300 295 DRRS-GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--GDGLLVQTR 369 (377)
T ss_pred ECCC-CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--CCEEEEEeC
Confidence 9965 5555444221 112222222 35688899999999999999998887776555332 233333 345888888
Q ss_pred cCCc
Q 013282 424 DRTY 427 (446)
Q Consensus 424 D~~~ 427 (446)
||.+
T Consensus 370 dG~l 373 (377)
T TIGR03300 370 DGDL 373 (377)
T ss_pred CceE
Confidence 8765
No 271
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.11 E-value=6.9e-07 Score=80.90 Aligned_cols=212 Identities=18% Similarity=0.197 Sum_probs=140.8
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeC-CCCCeEEEEEeCCCcEEEEecCcceeeEeeeC-
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGS-PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF- 275 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s-~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~- 275 (446)
++.++++--..+.|..|+..+.... ..... . ...+.+ . +++. |+.+.. +.+.++|+.+++.......
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~----~~~~~-~-~~G~~~--~~~~g~--l~v~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE----VIDLP-G-PNGMAF--DRPDGR--LYVADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE----EEESS-S-EEEEEE--ECTTSE--EEEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE----EEecC-C-CceEEE--EccCCE--EEEEEc-CceEEEecCCCcEEEEeecc
Confidence 5677777778899999998766322 11111 2 445555 4 5543 555544 4456669988876554442
Q ss_pred -----CCCeeEEEECCCCCEEEEEecC--------CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEE-EEeCCCc
Q 013282 276 -----PWPVNHSSQSPDGKLLIIVGDN--------PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA-TGNQDKT 341 (446)
Q Consensus 276 -----~~~v~~~~~sp~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-sgs~d~~ 341 (446)
....+.+++.|+|++.++.... |.|+.++.. ++...... .-...+.++|+|+++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 2347889999999977765543 557777877 55443333 345678999999998776 5566888
Q ss_pred EEEEEccCCCcce---EEE---ecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEE-cCC
Q 013282 342 CRIWDLRNLSESV---AVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISF-SPD 414 (446)
Q Consensus 342 v~iwd~~~~~~~~---~~~---~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-spd 414 (446)
|..+++......+ ..+ ....+..-.+++..+|++.++....+.|.+++.. |+.+..+.-....+++++| -|+
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 9999986433311 222 2222347789999999988877789999999977 8777766655568999999 578
Q ss_pred CCcEEEEEe
Q 013282 415 TESLFIGVW 423 (446)
Q Consensus 415 g~~l~~~~~ 423 (446)
.+.|++.+.
T Consensus 237 ~~~L~vTta 245 (246)
T PF08450_consen 237 GKTLYVTTA 245 (246)
T ss_dssp SSEEEEEEB
T ss_pred CCEEEEEeC
Confidence 788887653
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=2.1e-07 Score=90.48 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=123.0
Q ss_pred CCcE-EEEeccC---CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC--CcEEEEecCcceeeE
Q 013282 198 KDKL-LVAGGFQ---GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQLSK 271 (446)
Q Consensus 198 ~~~~-l~tg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d--g~v~iwd~~~~~~~~ 271 (446)
+|+. ++..+.. ..|.++++.++... .+. ...+......| +|+|+.++++.+.+ ..|.++++.+++...
T Consensus 198 DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---~lt-~~~g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 198 KEQTAFYYTSYGERKPTLYKYNLYTGKKE---KIA-SSQGMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ 271 (419)
T ss_pred CCCcEEEEEEccCCCCEEEEEECCCCcEE---EEe-cCCCcEEeeEE--CCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence 7774 5544333 46888888766433 222 23344444444 99999777776555 457777888877554
Q ss_pred eeeCCCCeeEEEECCCCCEEEEEecC---CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCC---------
Q 013282 272 HFRFPWPVNHSSQSPDGKLLIIVGDN---PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD--------- 339 (446)
Q Consensus 272 ~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d--------- 339 (446)
............|+|||+.|+..+.. ..|+++|+.+++..+.... ... ...|+|+|+.|+..+..
T Consensus 272 LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 272 ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNT 348 (419)
T ss_pred cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCC
Confidence 44444434566899999988776642 3688889988776443321 112 24899999998877653
Q ss_pred CcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCC---eEEEEEcCCCeeEeEeeccccCeEEE
Q 013282 340 KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---FVHVYDVKSGYEKEQEIDFFGEISGI 409 (446)
Q Consensus 340 ~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~ 409 (446)
..|.+.|+.. + ..+.+... +......|+|||+.|+..+..+ .+.+.++.. .....+....+.+...
T Consensus 349 ~~I~v~d~~~-g-~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 349 FNLYLISTNS-D-YIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKVGKIQSI 417 (419)
T ss_pred cEEEEEECCC-C-CeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCCCccCCC
Confidence 2577778744 3 34445443 2344689999999887766432 366777754 3344444444444443
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=6.2e-09 Score=92.59 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=115.2
Q ss_pred CccceEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCC-----CceeeEEEEeCCCCCeEEEEEeCCCcE
Q 013282 187 FTQTQVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-----AITNAVEIYGSPSGAVHFTASNNDCGV 259 (446)
Q Consensus 187 ~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~~v~~i~~~~s~~~~~~l~s~s~dg~v 259 (446)
.+.-.|.++++ |+..++++. |=.|.+|++.-....+...-...++ ..|++..| +|....+|+-++..|+|
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEF--hp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEF--HPHHCNVFVYSSSKGTI 238 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhcc--CHhHccEEEEecCCCcE
Confidence 34457888888 666676664 6679999998766554444444433 34677777 88877789999999999
Q ss_pred EEEecCcceee----Eeee-------------CCCCeeEEEECCCCCEEEEEecCCcEEEEEC-CCCceEEEecCCC---
Q 013282 260 RDFDMGKYQLS----KHFR-------------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS-MTGKTIASLCGHL--- 318 (446)
Q Consensus 260 ~iwd~~~~~~~----~~~~-------------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~--- 318 (446)
++-|++...+- ..+. --..|..+.|+++|+++++-.. -+|++||+ ...+++.+..-|.
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 99999853211 1111 1234888999999999998654 48999999 4667777665442
Q ss_pred ---------Cce---eEEEECCCCCEEEEEeCCCcEEEEEccC
Q 013282 319 ---------DFS---FASAWHPNGVTFATGNQDKTCRIWDLRN 349 (446)
Q Consensus 319 ---------~~v---~~~~~~p~~~~l~sgs~d~~v~iwd~~~ 349 (446)
+.| +.++|+.++.+++||+.....+++++..
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 222 5689999999999999999999999644
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.09 E-value=6.6e-07 Score=83.66 Aligned_cols=262 Identities=14% Similarity=0.043 Sum_probs=151.3
Q ss_pred ceeeeeeccccccceeeccceeeeEEecccCeEEEec-----------CCeEEEEecCCCCceEEEecCCC-CCCCCCCC
Q 013282 113 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMS-----------HFSVIHWSSLTSSRSQVLNVSGH-VAPSEKHP 180 (446)
Q Consensus 113 ~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~-----------~~~i~~w~~~~~~~~~~~~~~g~-~~~~~~~~ 180 (446)
..+-+...+..+..++.--+..+.+.+.....+|.+. +..|.+||..+.+...-+.+.+. -......
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~- 106 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY- 106 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc-
Confidence 3444444444444433322222223555555566543 46799999988865544444211 0000111
Q ss_pred CCccccCccceEEEEEeCCcEEEEec-c-CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCc
Q 013282 181 GSLLEGFTQTQVSTLAVKDKLLVAGG-F-QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 258 (446)
Q Consensus 181 g~~~~~~~~~~v~~l~~~~~~l~tg~-~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~ 258 (446)
.....++.+|++|+... . +..|.+.|+.+........+ .+ +..++-.+... +.+-+.||.
T Consensus 107 ---------~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~------~~~vy~t~e~~--~~~~~~Dg~ 168 (352)
T TIGR02658 107 ---------PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PD------CYHIFPTANDT--FFMHCRDGS 168 (352)
T ss_pred ---------cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CC------CcEEEEecCCc--cEEEeecCc
Confidence 13566777999988776 3 68899999988876543322 11 11111122222 112234444
Q ss_pred EEEEecCc-ceee-Ee---eeC------CCCeeEEEECC-CCCEEEEEecCCcEEEEECCC-----CceEEEecC-----
Q 013282 259 VRDFDMGK-YQLS-KH---FRF------PWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMT-----GKTIASLCG----- 316 (446)
Q Consensus 259 v~iwd~~~-~~~~-~~---~~~------~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~----- 316 (446)
.....+.. ++.. .. +.. ..+ .+.+ +|+++.+... |+|++.|+.. .+....+..
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence 44433321 2211 11 111 122 3455 8888877766 9999999643 333333221
Q ss_pred --CCCceeEEEECCCCCEEEEEeC----------CCcEEEEEccCCCcceEEEecCCCceEEEEEccCCC-EEEEEe-CC
Q 013282 317 --HLDFSFASAWHPNGVTFATGNQ----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAE-PA 382 (446)
Q Consensus 317 --~~~~v~~~~~~p~~~~l~sgs~----------d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~-~d 382 (446)
..+.+.-++++|+++.++.... .+.|.++|..+ .+.+..+.. ...+..++++|||+ +|++.+ .+
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCC
Confidence 2344556999999998887432 24799999966 777777764 34788999999999 887666 57
Q ss_pred CeEEEEEcCCCeeEeEee
Q 013282 383 DFVHVYDVKSGYEKEQEI 400 (446)
Q Consensus 383 g~i~iwd~~~~~~~~~~~ 400 (446)
+.|.++|+.+++.+..+.
T Consensus 322 ~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 322 KTLYIFDAETGKELSSVN 339 (352)
T ss_pred CcEEEEECcCCeEEeeec
Confidence 889999999998888763
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.07 E-value=5.5e-09 Score=94.84 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=107.8
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCe-eeEEEEeecCCCceeeEEEEeCCCCCeE--EEEEeCCCcEEEEecCcceeeEeee
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYDDNAITNAVEIYGSPSGAVH--FTASNNDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~i~~~~s~~~~~~--l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (446)
.+++||.+..+....++++..... ..+...... ....+++.+ -...... .-.++....+.+|....+.+...+.
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~--~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG 149 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISF--IREDTSVLVADKAGDVYSFDILSADSGRCEPILG 149 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeee--eeccceEEEEeecCCceeeeeecccccCcchhhh
Confidence 567777777777766766655442 111111111 112233333 2222222 2233455566677766688888888
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEec-CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 353 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~ 353 (446)
|-.-+..++|+||+++++++..|..|++-.......+..+. ||...|..++.-++ ..|++||.|++|++||+++ ++.
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s-gk~ 227 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS-GKL 227 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc-CCc
Confidence 98999999999999999999999999998877666666654 79999999998765 4589999999999999977 666
Q ss_pred eEEEe
Q 013282 354 VAVLK 358 (446)
Q Consensus 354 ~~~~~ 358 (446)
+.++.
T Consensus 228 L~t~d 232 (390)
T KOG3914|consen 228 LDTCD 232 (390)
T ss_pred ccccc
Confidence 66554
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.04 E-value=1.8e-09 Score=92.47 Aligned_cols=196 Identities=16% Similarity=0.179 Sum_probs=121.4
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCC--------C-eeeEEEEeecCCC--ceeeEEEEeCCCCCeEEEEEeCCCc
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRP--------G-VSFCSRTTYDDNA--ITNAVEIYGSPSGAVHFTASNNDCG 258 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~--------~-~~~~~~~~~~~~~--~v~~i~~~~s~~~~~~l~s~s~dg~ 258 (446)
.++.+.+ ....|+++..++.+......+. . ..-....+..+.+ +...+.+ ++ . -+++++.||.
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~---~~-t-~V~~~~~dg~ 112 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM---TD-N-RVCIGYADGS 112 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc---cC-C-ceEecCCCce
Confidence 4677776 6666777777666555433211 0 0000122222332 2233322 33 3 4899999999
Q ss_pred EEEEecCcc-eeeEeee--CCCCeeEEEECCCCCEEEEEe-----cCCcEEEEECCCCceEEEecCCCCceeEEEECC-C
Q 013282 259 VRDFDMGKY-QLSKHFR--FPWPVNHSSQSPDGKLLIIVG-----DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-N 329 (446)
Q Consensus 259 v~iwd~~~~-~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~ 329 (446)
+.+++.+.- +..+.+. +.+ ..+.++...++.+.+++ .-+..++|+++..+.+..-+.....|.+++-+| .
T Consensus 113 ~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 113 LAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQ 191 (319)
T ss_pred EEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccc
Confidence 999987651 1111111 111 11222223444444432 234566777664433322222334599999999 5
Q ss_pred CCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccC-CCEEEEEeCCCeEEEEEcCC
Q 013282 330 GVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSD-GRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 330 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~~~dg~i~iwd~~~ 392 (446)
.+++++|+.||.+-+||.|+..-++..++.|..+++.+-|+|. +..|++++.||.+.-||..+
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 6778889999999999999977788888999999999999994 57899999999999999775
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.4e-08 Score=99.72 Aligned_cols=180 Identities=17% Similarity=0.251 Sum_probs=133.5
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (446)
.++|+++.+.+|+.|+.+|.|++++..... .....|+.. ...|. .+++||.||+|.|..+-+.+..
T Consensus 41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~~-----~~~~~~s~~--------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 41 AISCCAVHDKFFALGTHRGAVYLTTCQGNP-----KTNFDHSSS--------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred HHHHHHhhcceeeeccccceEEEEecCCcc-----ccccccccc--------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 588888999999999999999998875442 111122221 34666 7999999999999999999999
Q ss_pred EeeeCCCCeeEEEECCC-----CCEEEEEecCCcEEEEECC--CCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEE
Q 013282 271 KHFRFPWPVNHSSQSPD-----GKLLIIVGDNPDGLLVDSM--TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCR 343 (446)
Q Consensus 271 ~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~ 343 (446)
..+....++.+++++|+ .+.+++||.-| +.++.-+ ..+....+..-.++|.++.|. |+++|-++.+| |+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 99999999999999997 67899999888 7777643 112222455567899999994 77999998887 99
Q ss_pred EEEccCCCcceEEEecCCCce------EEEEEccCCCEEEEEeCCCeEEEEEcC
Q 013282 344 IWDLRNLSESVAVLKGNLGAI------RSIRYTSDGRYMATAEPADFVHVYDVK 391 (446)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~v------~~l~~s~dg~~l~~~~~dg~i~iwd~~ 391 (446)
+||+.. .+.+..++.....+ ..+.|.++.+ |+.| ...+|+|..++
T Consensus 183 vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEeccc-cceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 999965 55555554433332 3578887765 4444 44558888877
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=8e-07 Score=95.79 Aligned_cols=199 Identities=17% Similarity=0.146 Sum_probs=128.0
Q ss_pred EEEEe--CCcEEEE-eccCCcEEEEEcCCCCeeeEEEE------eecC-------CCceeeEEEEeCCCCCeEEEEEeCC
Q 013282 193 STLAV--KDKLLVA-GGFQGELICKHLDRPGVSFCSRT------TYDD-------NAITNAVEIYGSPSGAVHFTASNND 256 (446)
Q Consensus 193 ~~l~~--~~~~l~t-g~~dg~i~vw~~~~~~~~~~~~~------~~~~-------~~~v~~i~~~~s~~~~~~l~s~s~d 256 (446)
..+++ +++.|+. -..++.|+++++.+......... ..+. -.....+.+ +|++..++++.+.+
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g~LyVad~~~ 704 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNEKVYIAMAGQ 704 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCCeEEEEECCC
Confidence 34444 5665544 45567889898866532211000 0000 001234444 88655577888888
Q ss_pred CcEEEEecCcceeeEeee---------------CCCCeeEEEECCCCCEE-EEEecCCcEEEEECCCCceEEEecC----
Q 013282 257 CGVRDFDMGKYQLSKHFR---------------FPWPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKTIASLCG---- 316 (446)
Q Consensus 257 g~v~iwd~~~~~~~~~~~---------------~~~~v~~~~~sp~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~---- 316 (446)
+.|++||..++....... .-.....++++|+++.| ++-+.++.|++||+.++.......+
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 999999997765432110 01235679999999855 5556789999999987653211100
Q ss_pred ---------C--------CCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEec--------------CCCceE
Q 013282 317 ---------H--------LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG--------------NLGAIR 365 (446)
Q Consensus 317 ---------~--------~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~--------------~~~~v~ 365 (446)
. -.....++++|+|+++++-+.+++|++||... +. +.++.+ .-....
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCce
Confidence 0 11235789999999988888999999999854 33 333322 112467
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEcCCCee
Q 013282 366 SIRYTSDGRYMATAEPADFVHVYDVKSGYE 395 (446)
Q Consensus 366 ~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 395 (446)
.|+++++|+.+++-+.++.|++||+.++..
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 899999999888888899999999988754
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.5e-09 Score=102.05 Aligned_cols=203 Identities=14% Similarity=0.115 Sum_probs=145.2
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCC----eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPG----VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~ 264 (446)
.|.+++. +.+.+++++.|.+|++|.+...+ ...|..+...|..+|..+.|. .+.. .+ ++.||.|.+||.
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL--~~lr-~i--~ScD~giHlWDP 811 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL--ADLR-SI--ASCDGGIHLWDP 811 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee--eccc-ee--eeccCcceeecc
Confidence 4556555 77899999999999999987543 345777888999999999883 3332 23 457899999998
Q ss_pred CcceeeEeee---CCCCeeEEEECC--CCCEEEEE-ecCCcEEEEECCCCceEEEec-----CCCCceeEEEECCCCCEE
Q 013282 265 GKYQLSKHFR---FPWPVNHSSQSP--DGKLLIIV-GDNPDGLLVDSMTGKTIASLC-----GHLDFSFASAWHPNGVTF 333 (446)
Q Consensus 265 ~~~~~~~~~~---~~~~v~~~~~sp--~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l 333 (446)
-.++++.... ..+.+..+..-| +...+++| +...+|+++|.+.+.-+..++ +..+-+.+++..|.|+++
T Consensus 812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l 891 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL 891 (1034)
T ss_pred cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence 7777665332 122233333333 44444444 678899999999888776665 334668899999999999
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEE-EEcCCCeeEeEee
Q 013282 334 ATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHV-YDVKSGYEKEQEI 400 (446)
Q Consensus 334 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~i-wd~~~~~~~~~~~ 400 (446)
+.|-.+|+|.+.|.|+ +..+..+..-......++ .|..+.|+....|.++.+ |....|....+..
T Consensus 892 Aa~LSnGci~~LDaR~-G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 892 AAALSNGCIAILDARN-GKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred hHHhcCCcEEEEecCC-CceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 9999999999999988 776666655444444444 466677888888888888 8877765544443
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=7.3e-09 Score=100.59 Aligned_cols=228 Identities=13% Similarity=0.090 Sum_probs=154.1
Q ss_pred cEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce-eeEeee-CCC
Q 013282 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ-LSKHFR-FPW 277 (446)
Q Consensus 200 ~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~ 277 (446)
..+|+.+ ...-.+|++...........+.+|...++.+.| .|....++++++-|..|..||+.+.. ++..+. -..
T Consensus 83 ~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~--~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 83 YWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINF--NPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred eeEEecC-cchhhhhhhhcCCccceEEEEecCccceecccc--CCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 3444444 445678999776655445667788888888877 88888799999999999999998754 333333 344
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCC-ceEEEecCCCCceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCcceE
Q 013282 278 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVA 355 (446)
Q Consensus 278 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~~~~~~ 355 (446)
....++|+-....+++.+....|.+||++.| .++..+++|...|+.++|+. -...+.+++.|++|+.||..+..+.-.
T Consensus 160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred cCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence 5677899875555555666778999999854 67889999999999999976 345688899999999999976443333
Q ss_pred EEecCCCceEEEEEccCCC--EEEEEeCCCeEEEEE---------cCC-CeeEeEeeccccCeEEEEEcCCCC-------
Q 013282 356 VLKGNLGAIRSIRYTSDGR--YMATAEPADFVHVYD---------VKS-GYEKEQEIDFFGEISGISFSPDTE------- 416 (446)
Q Consensus 356 ~~~~~~~~v~~l~~s~dg~--~l~~~~~dg~i~iwd---------~~~-~~~~~~~~~~~~~v~~~~~spdg~------- 416 (446)
.......+|..-++.|-|. ++.---.+..+.+++ ..+ .+.++.+.+|...|..+.|-..+.
T Consensus 240 ~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~ 319 (1081)
T KOG0309|consen 240 RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDS 319 (1081)
T ss_pred eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCc
Confidence 3333455777777777553 222111122344443 332 246788889988777666654322
Q ss_pred ---cEEEEEecCCcceE
Q 013282 417 ---SLFIGVWDRTYGSL 430 (446)
Q Consensus 417 ---~l~~~~~D~~~~~~ 430 (446)
.|++=+.|.+++-|
T Consensus 320 rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 320 RDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred cceeEEEeecCCceEee
Confidence 35566666555433
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.97 E-value=9.9e-07 Score=82.75 Aligned_cols=248 Identities=16% Similarity=0.186 Sum_probs=156.1
Q ss_pred CCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEee
Q 013282 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTY 229 (446)
Q Consensus 150 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~ 229 (446)
..++.+||..++. .+..+.+...+ ...-++.-.+.+.+++|-- ....++|+++ +..... .. .
T Consensus 107 ~n~~~vwd~~sg~--iv~sf~~~~q~-----------~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~--~p-~ 168 (561)
T COG5354 107 KNNVFVWDIASGM--IVFSFNGISQP-----------YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEE--HP-F 168 (561)
T ss_pred cCceeEEeccCce--eEeeccccCCc-----------ccccceeeeeecchhhhhh-ccCeEEEEec-CCcccc--Cc-h
Confidence 3458889988884 33333322111 1111466666677666554 3456899987 332110 00 0
Q ss_pred cCCCceeeEEEEeCCCCCe-EEEE-----EeCCCcEEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEe-------
Q 013282 230 DDNAITNAVEIYGSPSGAV-HFTA-----SNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVG------- 295 (446)
Q Consensus 230 ~~~~~v~~i~~~~s~~~~~-~l~s-----~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~------- 295 (446)
....++....|.++|.+.. .|+. .+..+.+++|.+..++.+.+-. ....=..+.|++.|++|++-.
T Consensus 169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 1112334455666776421 2232 3578899999998777666554 333345688999998775531
Q ss_pred ----cCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEe--CCCcEEEEEccCCCcceEEEecCCCceEEEEE
Q 013282 296 ----DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN--QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRY 369 (446)
Q Consensus 296 ----~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~ 369 (446)
....++|++++.. -+.....-.++|...+|.|.++.+++.+ ...++.++|++. .....+ ..+.=+.+.|
T Consensus 249 KsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~~--Pe~~rNT~~f 323 (561)
T COG5354 249 KSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRFYF--PEQKRNTIFF 323 (561)
T ss_pred cceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeeccccc--ceEEec--CCcccccccc
Confidence 1246788888733 3333335678999999999888776655 688999999964 433333 3445667889
Q ss_pred ccCCCEEEEEeCC---CeEEEEEcCCCeeEe-EeeccccCeEEEEEcCCCCcEEEEE
Q 013282 370 TSDGRYMATAEPA---DFVHVYDVKSGYEKE-QEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 370 s~dg~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
+|.+++++.++-+ |.|-+||......+. .+.+. ..+-+.|+|+|+++.++.
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecC
Confidence 9999999998765 679999987765444 33322 234567999999988763
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.97 E-value=7.9e-07 Score=94.13 Aligned_cols=186 Identities=16% Similarity=0.179 Sum_probs=128.1
Q ss_pred CceeeEEEEeCCCCCeEEEEEeCCCcEEEE----ecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC
Q 013282 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDF----DMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG 308 (446)
Q Consensus 233 ~~v~~i~~~~s~~~~~~l~s~s~dg~v~iw----d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 308 (446)
+.|.++.+ -++.. .++.+..+|.|.+. +.........-.....|.+++||||+.+|+.++.++++.+... +.
T Consensus 76 ~~ivs~~y--l~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~f 151 (928)
T PF04762_consen 76 DKIVSFQY--LADSE-SLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DF 151 (928)
T ss_pred CcEEEEEe--ccCCC-cEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cc
Confidence 34555554 56665 47777788999999 6655544443446678999999999999999999999887652 21
Q ss_pred ceEE------------------------EecC------------------------CCCceeEEEECCCCCEEEEEeC--
Q 013282 309 KTIA------------------------SLCG------------------------HLDFSFASAWHPNGVTFATGNQ-- 338 (446)
Q Consensus 309 ~~~~------------------------~~~~------------------------~~~~v~~~~~~p~~~~l~sgs~-- 338 (446)
.++. .|.| +.+.-..++|-.||.+||+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 1111 1111 1223457899999999998875
Q ss_pred -C---CcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeC---CCeEEEEEcCCCeeEeEeec----cccCeE
Q 013282 339 -D---KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---ADFVHVYDVKSGYEKEQEID----FFGEIS 407 (446)
Q Consensus 339 -d---~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~---dg~i~iwd~~~~~~~~~~~~----~~~~v~ 407 (446)
. ..+|||+-. +....+-..-.+--.+++|.|.|.+||+.-. ...|.+|. ++|-....+.- ....|.
T Consensus 232 ~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred CCCceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceee
Confidence 2 479999973 4444443333344457899999999998764 34578887 56644444332 345799
Q ss_pred EEEEcCCCCcEEEEEecC
Q 013282 408 GISFSPDTESLFIGVWDR 425 (446)
Q Consensus 408 ~~~~spdg~~l~~~~~D~ 425 (446)
.+.|++|+..||+...|.
T Consensus 309 ~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR 326 (928)
T ss_pred EEEECCCCCEEEEEecCC
Confidence 999999999999987665
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=1.4e-08 Score=92.32 Aligned_cols=153 Identities=15% Similarity=0.202 Sum_probs=108.5
Q ss_pred CCCCCeEEEEEeCCCcEEEEecCcc----eeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEE---EEECCCCceEEEec
Q 013282 243 SPSGAVHFTASNNDCGVRDFDMGKY----QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGL---LVDSMTGKTIASLC 315 (446)
Q Consensus 243 s~~~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~---i~d~~~~~~~~~~~ 315 (446)
++.+. +++++..+....+++.... ++...+..+...+.+.+..+.....++..-|.++ +|....+. ...+-
T Consensus 71 s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~l 148 (390)
T KOG3914|consen 71 SDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPIL 148 (390)
T ss_pred CCCce-EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhh
Confidence 55655 6777777777667766432 3334444455555666655555555554444444 44444443 33455
Q ss_pred CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEE-EecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 013282 316 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 394 (446)
Q Consensus 316 ~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~ 394 (446)
||-..++.++|+||+++++++..|..||+-.... ...+.. .-||..-|..++.-++ +.|++|+.|++|++||+.+|+
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence 7999999999999999999999999999998855 334444 4479999999998765 568999999999999999998
Q ss_pred eEeEe
Q 013282 395 EKEQE 399 (446)
Q Consensus 395 ~~~~~ 399 (446)
.+..+
T Consensus 227 ~L~t~ 231 (390)
T KOG3914|consen 227 LLDTC 231 (390)
T ss_pred ccccc
Confidence 76443
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.95 E-value=8.6e-07 Score=85.78 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=132.6
Q ss_pred EeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceee-EEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee
Q 013282 196 AVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNA-VEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 196 ~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (446)
..++..++.++.+|.|..+|..+++....... .+.+.+ ..+ .+. .++.++.++.|+.||..+++.+..+.
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~~~p~v----~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSEVLSPPLV----ANG-LVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcEeeeecc----CceeecCCEE----ECC-EEEEECCCCeEEEEEcCCCceeeEEc
Confidence 34678888999999999999988775543222 111111 111 123 46667789999999999999988876
Q ss_pred CCCCeeEEE--ECC--CCCEEEEEecCCcEEEEECCCCceEEEecCCCC-------ceeEEEECC--CCCEEEEEeCCCc
Q 013282 275 FPWPVNHSS--QSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD-------FSFASAWHP--NGVTFATGNQDKT 341 (446)
Q Consensus 275 ~~~~v~~~~--~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~p--~~~~l~sgs~d~~ 341 (446)
...+...+. -+| .+..++++..++.+..+|+++|+.+........ ....+.-+| .+..+++++.+|.
T Consensus 173 ~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~ 252 (377)
T TIGR03300 173 RVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR 252 (377)
T ss_pred cCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE
Confidence 433321111 111 234677888889999999999987755431100 000111112 3557888889999
Q ss_pred EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeecccc-CeEEEEEcCCCCcEEE
Q 013282 342 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTESLFI 420 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~ 420 (446)
+..||..+ ++.+..... . ...... ..+..|+.++.+|.|+.+|..+|+.+.......+ ....... .+..|++
T Consensus 253 l~a~d~~t-G~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~ 325 (377)
T TIGR03300 253 VAALDLRS-GRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV 325 (377)
T ss_pred EEEEECCC-CcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE
Confidence 99999965 665554432 1 122222 2456788888999999999999976654422211 1222222 3557777
Q ss_pred EEecCCc
Q 013282 421 GVWDRTY 427 (446)
Q Consensus 421 ~~~D~~~ 427 (446)
++.+|.+
T Consensus 326 ~~~~G~l 332 (377)
T TIGR03300 326 GDFEGYL 332 (377)
T ss_pred EeCCCEE
Confidence 7666543
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.94 E-value=3.9e-08 Score=87.59 Aligned_cols=200 Identities=14% Similarity=0.123 Sum_probs=149.3
Q ss_pred EeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe-cCcceeeEeee--CCCCeeEEEECCCCCEEEEEecCCcEEEE
Q 013282 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD-MGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLV 303 (446)
Q Consensus 227 ~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd-~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 303 (446)
...++...+++..+ -|... -+++.+.|.++|+|- ...++.-..+. .+.+++++.++++...|++|-.+|++.-+
T Consensus 19 ~~eG~~d~vn~~~l--~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 19 KIEGSQDDVNAAIL--IPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhcCchhhhhhhee--ccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 34466666666554 34444 388999999999994 34455444444 57889999999999999999999999888
Q ss_pred ECC----CCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEcc-------------------------------
Q 013282 304 DSM----TGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLR------------------------------- 348 (446)
Q Consensus 304 d~~----~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~------------------------------- 348 (446)
-+. ....++....|...++.+-|+-...++++.+.|..+. |...
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~ 174 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHS 174 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccc
Confidence 764 3334455567888888888887777777777765432 2110
Q ss_pred ----------CCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe-eEeEeeccccCeEEEEEcCCCCc
Q 013282 349 ----------NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDTES 417 (446)
Q Consensus 349 ----------~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~spdg~~ 417 (446)
+.-.++.++.+|.+.+++++|.|..+.|.+|..|..|.+||+--.+ ....+.+|...|..+...+--+.
T Consensus 175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 1123556778999999999999999999999999999999987543 34556678888988888888888
Q ss_pred EEEEEecCCcceE
Q 013282 418 LFIGVWDRTYGSL 430 (446)
Q Consensus 418 l~~~~~D~~~~~~ 430 (446)
|++++.|+.+-.|
T Consensus 255 l~S~~edg~i~~w 267 (404)
T KOG1409|consen 255 LISCGEDGGIVVW 267 (404)
T ss_pred eeeccCCCeEEEE
Confidence 9999999877654
No 286
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=5.5e-10 Score=110.17 Aligned_cols=209 Identities=13% Similarity=0.154 Sum_probs=151.3
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC-cEEEEecC-c
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-GVRDFDMG-K 266 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg-~v~iwd~~-~ 266 (446)
..+|++| ..+.|+.|+..|.|+++++.++.-. .....|++.++.+.- +.+|...|.+++... -..+|++. +
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---~s~ncH~SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---ESVNCHQSAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCcccc---ccccccccccccccc--cCCcceeeeeccccCchHHHhccccc
Confidence 4667777 7899999999999999999887433 455678888888876 788887777766665 57799985 4
Q ss_pred ceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEe-cC---CCCceeEEEECCCCCEEEEEeCCCcE
Q 013282 267 YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-CG---HLDFSFASAWHPNGVTFATGNQDKTC 342 (446)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~---~~~~v~~~~~~p~~~~l~sgs~d~~v 342 (446)
+.+.+.|. .-.++.|+.....-+.|+......+||++++.++.++ .+ ..-.-++..|+|+..+++ +||
T Consensus 1178 ~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG-- 1249 (1516)
T KOG1832|consen 1178 GGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG-- 1249 (1516)
T ss_pred cCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--
Confidence 56666665 3457788775555566666678999999999877663 22 122236788999887765 455
Q ss_pred EEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEE
Q 013282 343 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
.+||+|. .+.++.|...+..+ .=.|+|.|..++..+ -|||+++.+.++...... -..+.|+..|..++..
T Consensus 1250 vLWDvR~-~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1250 VLWDVRI-PEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eeeeecc-HHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhh
Confidence 6899988 47777766544322 346999999888765 399999987776665443 3567888888877754
No 287
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.92 E-value=3.1e-08 Score=98.51 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=138.9
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FP 276 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 276 (446)
++..++.|+....+..+|+++.... +...-..+.+..++ .+++ .+++|...|+|.+-|+.+.+.++++. |.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~---r~~~v~a~~v~imR----~Nnr-~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKET---RTTNVSASGVTIMR----YNNR-NLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceee---eeeeccCCceEEEE----ecCc-EEEeecccceEEeecCCcCceeeeeeccc
Confidence 6788999999999999999876433 33222222244442 3444 79999999999999999999999999 99
Q ss_pred CCeeEEEECCCCCEEEEEec---------CCcEEEEECCCCceEEEecCCCCceeEEEECC-CCCEEEEEeCCCcEEEEE
Q 013282 277 WPVNHSSQSPDGKLLIIVGD---------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 277 ~~v~~~~~sp~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~v~iwd 346 (446)
+.|..+.. .|++|+++|. |.-|++||++.-+.+..+.-+.++ .-+.|+| -...+++++..|...+-|
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 98887765 5899999875 456799999988777766655555 4578999 356788999999999999
Q ss_pred ccCCCc---ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 013282 347 LRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 389 (446)
Q Consensus 347 ~~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd 389 (446)
....+. .+..+......+.++.++++|+.||.|..+|.|.+|-
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 433233 3344444455699999999999999999999999997
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=3.7e-06 Score=75.66 Aligned_cols=186 Identities=16% Similarity=0.085 Sum_probs=120.3
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEee-eCC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF-RFP 276 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~ 276 (446)
+++.+++++.++.|..||..++........ .. ........ .+ . .++.++.++.|+.+|+.+++.+... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~--~~~~~~~~---~~-~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG--PISGAPVV---DG-G-RVYVGTSDGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS--CGGSGEEE---ET-T-EEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc--cccceeee---cc-c-ccccccceeeeEecccCCcceeeeecccc
Confidence 777888888999999999988865543332 11 11111111 23 3 3666668889999999999999884 322
Q ss_pred C----CeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCc----------eeEEEECCCCCEEEEEeCCCc-
Q 013282 277 W----PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDF----------SFASAWHPNGVTFATGNQDKT- 341 (446)
Q Consensus 277 ~----~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------v~~~~~~p~~~~l~sgs~d~~- 341 (446)
. ....+.....+..++++..++.|..+|+++|+.+......... +..-....++ .++.++.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~ 185 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRV 185 (238)
T ss_dssp SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSE
T ss_pred ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeE
Confidence 1 1122233334888999998999999999999998887654322 1122222344 6666666775
Q ss_pred EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEe
Q 013282 342 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 397 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~ 397 (446)
+.+ |+.+ ++.+.... ...+..+ ..+.+..|++++.++.|.+||+++|+.+-
T Consensus 186 ~~~-d~~t-g~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 186 VAV-DLAT-GEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEE-ETTT-TEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEE-ECCC-CCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 555 9976 55443322 2333332 34677788888899999999999997654
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.1e-08 Score=91.07 Aligned_cols=147 Identities=10% Similarity=0.034 Sum_probs=116.6
Q ss_pred EEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-----ceEEEecCCCCceeEEE
Q 013282 251 TASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-----KTIASLCGHLDFSFASA 325 (446)
Q Consensus 251 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~v~~~~ 325 (446)
++.+.+-.|-+-+++++... .|.....|.++.|...++++..|..+|.|..+|++.+ .+...+. |...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 45557778888899887643 3446677999999998999999999999999999854 4455555 888999988
Q ss_pred ECC-CCCEEEEEeCCCcEEEEEccCCCcc---eEEEecCCCceEE--EEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEe
Q 013282 326 WHP-NGVTFATGNQDKTCRIWDLRNLSES---VAVLKGNLGAIRS--IRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 399 (446)
Q Consensus 326 ~~p-~~~~l~sgs~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~--l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~ 399 (446)
.-. ++.+|++.+.+|+|++||+|. .++ +.++.+|...-.- +...+....+++++.|...+||.+..|..+.++
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 776 788999999999999999987 444 7888888653322 334566678899999999999999999877665
Q ss_pred e
Q 013282 400 I 400 (446)
Q Consensus 400 ~ 400 (446)
.
T Consensus 385 p 385 (425)
T KOG2695|consen 385 P 385 (425)
T ss_pred C
Confidence 5
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.86 E-value=4.1e-07 Score=78.62 Aligned_cols=168 Identities=8% Similarity=-0.078 Sum_probs=116.0
Q ss_pred EEEEEeCCCcEEEEecCcceeeEeee--CCCCeeEEEEC-CCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEE
Q 013282 249 HFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQS-PDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASA 325 (446)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~s-p~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 325 (446)
.|+.|+..|...+|.+.+.+....+. +...|.-+.=. -....+..++.|.++++.++.-+..-..+....-...+++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH 165 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence 68889999999999998765443332 22222211100 1123467788888888888764432222211112378999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCCcceEE--EecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEe-----E
Q 013282 326 WHPNGVTFATGNQDKTCRIWDLRNLSESVAV--LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE-----Q 398 (446)
Q Consensus 326 ~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~-----~ 398 (446)
++|+++++++.+....|..|.+...+..+.. .......--+..|+.....+|++..||++.|||++....+. +
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST 245 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc
Confidence 9999999999999999999999765543333 22334445578999999999999999999999998754332 2
Q ss_pred eeccccCeEEEEEcCCCC
Q 013282 399 EIDFFGEISGISFSPDTE 416 (446)
Q Consensus 399 ~~~~~~~v~~~~~spdg~ 416 (446)
-..|.|.+..+.|+|-|.
T Consensus 246 rp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 246 RPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCCCCCceEEEEecCCCc
Confidence 335889999999998664
No 291
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.86 E-value=1.5e-06 Score=81.58 Aligned_cols=236 Identities=12% Similarity=0.100 Sum_probs=147.5
Q ss_pred EEEEEe--CCcEEEEeccCC---------------cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEe
Q 013282 192 VSTLAV--KDKLLVAGGFQG---------------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN 254 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~~dg---------------~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s 254 (446)
|.-+.+ .+++|++-...+ .+.+||..++...+...........-..+.| +-+... ++--
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~--s~~D~y-~ARv- 149 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKF--SIDDKY-VARV- 149 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeee--eecchh-hhhh-
Confidence 444444 777777755433 4899999887655433222211111124444 555542 2221
Q ss_pred CCCcEEEEecCcceee-Eeee--CCCCeeEEEECCCCC--EEEE-----EecCCcEEEEECCCCceEEEecCCCCceeEE
Q 013282 255 NDCGVRDFDMGKYQLS-KHFR--FPWPVNHSSQSPDGK--LLII-----VGDNPDGLLVDSMTGKTIASLCGHLDFSFAS 324 (446)
Q Consensus 255 ~dg~v~iwd~~~~~~~-~~~~--~~~~v~~~~~sp~~~--~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 324 (446)
-...++|+++ +.... .-+. ....|....|+|.++ .|++ .+..+.+++|.+..++.+.+-.-....-..+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 3356888987 33221 1111 245688899999543 4444 3567889999998776665433233344578
Q ss_pred EECCCCCEEEEEeC-----------CCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEe--CCCeEEEEEcC
Q 013282 325 AWHPNGVTFATGNQ-----------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE--PADFVHVYDVK 391 (446)
Q Consensus 325 ~~~p~~~~l~sgs~-----------d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--~dg~i~iwd~~ 391 (446)
.|++.|++|+.--. ...+.|++++. ..+.....-.++|...+|.|.++.+++.+ ..-.+.++|++
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 99999988764311 24578888863 44444435578999999999998766544 67789999998
Q ss_pred CCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEEEeccc
Q 013282 392 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRCR 437 (446)
Q Consensus 392 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~~~~~ 437 (446)
.. .. +....+.=+.+.|+|.++++++++.|...|....+....
T Consensus 307 ~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 307 GN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cc-eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 65 22 333455567788999999999988888877666555443
No 292
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.84 E-value=2.2e-05 Score=75.80 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=82.5
Q ss_pred CCCCeeEEEECC-CCCEEEEEe----cCCc----EEEEECCCCceEE--Ee-cCCCCceeEEEECCCCCEEEEEeCCCcE
Q 013282 275 FPWPVNHSSQSP-DGKLLIIVG----DNPD----GLLVDSMTGKTIA--SL-CGHLDFSFASAWHPNGVTFATGNQDKTC 342 (446)
Q Consensus 275 ~~~~v~~~~~sp-~~~~l~~~~----~d~~----i~i~d~~~~~~~~--~~-~~~~~~v~~~~~~p~~~~l~sgs~d~~v 342 (446)
......++.||- ++..+.+.. .+|. ..+|++..++..+ .. -.....|.+++++|+...++.|+.||+|
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence 344456777776 555555542 2333 3566665443221 11 1367789999999999999999999999
Q ss_pred EEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 013282 343 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~ 393 (446)
.+||... + +..+....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~-~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTR-G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCC-C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999854 2 3333334456789999999999999999999999998643
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.83 E-value=6.3e-06 Score=74.54 Aligned_cols=213 Identities=16% Similarity=0.136 Sum_probs=136.1
Q ss_pred CcEEEEeccCCc-EEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEE-----eCCCcEEEEecC-cceeeE
Q 013282 199 DKLLVAGGFQGE-LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-----NNDCGVRDFDMG-KYQLSK 271 (446)
Q Consensus 199 ~~~l~tg~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~-----s~dg~v~iwd~~-~~~~~~ 271 (446)
+..++.+-.-|+ ..+||..+..... ......+..-.=.-.||++|.. |++. +..|.|-|||.. +.+.+.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs~dG~~-LytTEnd~~~g~G~IgVyd~~~~~~ri~ 92 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFSPDGRL-LYTTENDYETGRGVIGVYDAARGYRRIG 92 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceee---EEcCCCCCEEecCEEEcCCCCE-EEEeccccCCCcEEEEEEECcCCcEEEe
Confidence 344455555443 3456665554332 1111111111111124999995 5554 345889999998 777777
Q ss_pred eee-CCCCeeEEEECCCCCEEEEEe------------------cCCcEEEEECCCCceEEEec----CCCCceeEEEECC
Q 013282 272 HFR-FPWPVNHSSQSPDGKLLIIVG------------------DNPDGLLVDSMTGKTIASLC----GHLDFSFASAWHP 328 (446)
Q Consensus 272 ~~~-~~~~v~~~~~sp~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~p 328 (446)
.+. +.-....+.+.|||+.|+++. .+.++.+.|..+|+.+.+.. -|.-.|..+++.+
T Consensus 93 E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~ 172 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG 172 (305)
T ss_pred EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC
Confidence 877 555667788999998887762 23457778889999887733 3778899999999
Q ss_pred CCCEEEEEeCCCc-------EEEEEccCCCcceEEEe-------cCCCceEEEEEccCCCEEEEEeC-CCeEEEEEcCCC
Q 013282 329 NGVTFATGNQDKT-------CRIWDLRNLSESVAVLK-------GNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSG 393 (446)
Q Consensus 329 ~~~~l~sgs~d~~-------v~iwd~~~~~~~~~~~~-------~~~~~v~~l~~s~dg~~l~~~~~-dg~i~iwd~~~~ 393 (446)
+|..++..-..|- |-++.. +..+..+. .-.+-+-+|+++++|.++++.+. .+.+.+||..++
T Consensus 173 ~G~V~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 173 DGTVAFAMQYQGDPGDAPPLVALHRR---GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred CCcEEEEEecCCCCCccCCeEEEEcC---CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 9976665544332 444443 22222222 22356889999999998876664 678999999999
Q ss_pred eeEeEeeccccCeEEEEEcCCCCcEEEE
Q 013282 394 YEKEQEIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 394 ~~~~~~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
..+.... -..+.+++-.+++ ++++.
T Consensus 250 ~~~~~~~--l~D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 250 RLLGSVP--LPDACGVAPTDDG-FLVSS 274 (305)
T ss_pred CEeeccc--cCceeeeeecCCc-eEEeC
Confidence 7665543 2346778777776 55444
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.83 E-value=3.8e-05 Score=69.51 Aligned_cols=216 Identities=15% Similarity=0.136 Sum_probs=133.3
Q ss_pred EEecccCeEEEec--CCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEE
Q 013282 137 VWATSKHDVYLMS--HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELI 212 (446)
Q Consensus 137 ~~~~~~~~v~~~~--~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~ 212 (446)
+|....+.+|++. .+.|..|+..++... .+...+ ...+++ .+..|+.+...+ +.
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--------------------~~G~~~~~~~g~l~v~~~~~-~~ 63 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--------------------PNGMAFDRPDGRLYVADSGG-IA 63 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--------------------EEEEEEECTTSEEEEEETTC-EE
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--------------------CceEEEEccCCEEEEEEcCc-eE
Confidence 3444455555543 677888888776332 233332 222233 345555555544 55
Q ss_pred EEEcCCCCeeeEEEEeec--CCCceeeEEEEeCCCCCeEEEEEeCC--------CcEEEEecCcceeeEeeeCCCCeeEE
Q 013282 213 CKHLDRPGVSFCSRTTYD--DNAITNAVEIYGSPSGAVHFTASNND--------CGVRDFDMGKYQLSKHFRFPWPVNHS 282 (446)
Q Consensus 213 vw~~~~~~~~~~~~~~~~--~~~~v~~i~~~~s~~~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~v~~~ 282 (446)
++++.+............ .....+.+.+ .++|. +.++.... |.|..++.. ++.......-...+.+
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v--d~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi 139 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAV--DPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGI 139 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE---TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEE--cCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccce
Confidence 568877654332222211 3345566666 99998 45554433 567788877 6655555544557899
Q ss_pred EECCCCCEEE-EEecCCcEEEEECCCC-c------eEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013282 283 SQSPDGKLLI-IVGDNPDGLLVDSMTG-K------TIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 354 (446)
Q Consensus 283 ~~sp~~~~l~-~~~~d~~i~i~d~~~~-~------~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~ 354 (446)
+|+|+++.|+ +-+..+.|..+++... . ....+....+..-.+++.++|++.++....+.|.+++.. ++.+
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~ 217 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLL 217 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEE
Confidence 9999999775 5567888999998532 2 122223233347789999999988888888999999984 6777
Q ss_pred EEEecCCCceEEEEE-ccCCCEEEEEe
Q 013282 355 AVLKGNLGAIRSIRY-TSDGRYMATAE 380 (446)
Q Consensus 355 ~~~~~~~~~v~~l~~-s~dg~~l~~~~ 380 (446)
..+......+++++| -|+.+.|+..+
T Consensus 218 ~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 218 REIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 777765568999999 46766665543
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=9e-07 Score=86.16 Aligned_cols=224 Identities=16% Similarity=0.105 Sum_probs=153.5
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeec-CCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.|.-+.| ..+.|-|...+|-|.||-+-.+... ...... ..+.|.++ .|+.+|.+ +.....||.|.+=.++..
T Consensus 73 sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~--EEMiNnRnKSvV~Sm--sWn~dG~k-IcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 73 SVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC--EEMINNRNKSVVVSM--SWNLDGTK-ICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred eEEEEEeccccccccccCCCceEEEEeeecccHH--HHHhhCcCccEEEEE--EEcCCCcE-EEEEEccCCEEEEeeccc
Confidence 5667777 5678999999999999998765421 222222 23344455 45899985 777789999888777654
Q ss_pred eeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-------ceEEE----ecCCCCceeEEEEC--------C
Q 013282 268 QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-------KTIAS----LCGHLDFSFASAWH--------P 328 (446)
Q Consensus 268 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-------~~~~~----~~~~~~~v~~~~~~--------p 328 (446)
+.-..--.......+.|++|.+.++.+-.+|.++++|-+.. .+... +......+..+.|. |
T Consensus 148 RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p 227 (1189)
T KOG2041|consen 148 RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP 227 (1189)
T ss_pred eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC
Confidence 43221112223557889999999999999999999997532 11111 11122345566664 4
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCC---------eEEEEEcCCCeeEeEe
Q 013282 329 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD---------FVHVYDVKSGYEKEQE 399 (446)
Q Consensus 329 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg---------~i~iwd~~~~~~~~~~ 399 (446)
+...|+.+-.+|.+.|---.+...++..-.+ ..+..+.|+++|..||.++.+. .|++|.. -|..+..+
T Consensus 228 drP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtl 304 (1189)
T KOG2041|consen 228 DRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTL 304 (1189)
T ss_pred CCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEE
Confidence 7788999999999988766554555544444 5788999999999999987542 4666653 35566667
Q ss_pred eccccCeEEEEEcCCCCcEEEEE
Q 013282 400 IDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 400 ~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
.-....|++++|-..|-.++.+.
T Consensus 305 kvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 305 KVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred ecCCceeeeeEEcCCceEEEEEe
Confidence 66777899999998887777664
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=8.7e-08 Score=93.32 Aligned_cols=219 Identities=15% Similarity=0.164 Sum_probs=146.3
Q ss_pred EEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCC--ceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc--cee
Q 013282 194 TLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA--ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK--YQL 269 (446)
Q Consensus 194 ~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~--~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~--~~~ 269 (446)
++.+.|+-+|.++..| +.+.++..+...+ +.+ .|.. .|..+.+..+|.....+++.+. ..-.+|++.. .+.
T Consensus 31 si~p~grdi~lAsr~g-l~i~dld~p~~pp--r~l-~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~a 105 (1081)
T KOG0309|consen 31 SINPSGRDIVLASRQG-LYIIDLDDPFTPP--RWL-HHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNA 105 (1081)
T ss_pred eeccccchhhhhhhcC-eEEEeccCCCCCc--eee-eccCcchhcceecccCCCCceeEEecCc-chhhhhhhhcCCccc
Confidence 3344788899999888 4566887765432 222 2222 2444555334444444555544 4455888753 223
Q ss_pred eEee--eCCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCC-ceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 270 SKHF--RFPWPVNHSSQSPDG-KLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 270 ~~~~--~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
+..+ .|...|+.+.|+|+. ..+++++-|..+..||+++. .++..+..-......++|+--...+.+.+..+.|++|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 3322 388899999999954 57799999999999999965 4555555544556789998843344445567789999
Q ss_pred EccCCCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEcCCCe-eEeEeeccccCeEEEEEcCCCCc
Q 013282 346 DLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDTES 417 (446)
Q Consensus 346 d~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~spdg~~ 417 (446)
|+|..+.++..+++|...|+++.|..-- ..+.+.+.|++|++||..+.. ..........+|..-.|.|-|+-
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCce
Confidence 9999899999999999999999886532 357788899999999987542 22222233456666666665543
No 297
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.2e-06 Score=85.39 Aligned_cols=206 Identities=14% Similarity=0.046 Sum_probs=136.5
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCC-CceeeEEEEeCCCCCeEEEEEeCCCc-----EEEEec
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-AITNAVEIYGSPSGAVHFTASNNDCG-----VRDFDM 264 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~~i~~~~s~~~~~~l~s~s~dg~-----v~iwd~ 264 (446)
.|+|++..+..+|.|+.+|.|.+.+- .-.. ...+..+. ++|..+. .-++..+|++.+.|+. |++|++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~--s~~~--~~~fqa~~~siv~~L~---~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS--SFQL--IRGFQAYEQSIVQFLY---ILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc--ccee--eehheecchhhhhHhh---cccCceEEEEEeecCCCCceEEEEecc
Confidence 58888889999999999998766543 2111 12222222 2344443 4566557777766654 899998
Q ss_pred Cc------ceee---Eeee-----CCCCeeEEEECCCCCEEEEEecCCcEEEEECC----CCceEEEecCCCCceeEEEE
Q 013282 265 GK------YQLS---KHFR-----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM----TGKTIASLCGHLDFSFASAW 326 (446)
Q Consensus 265 ~~------~~~~---~~~~-----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~ 326 (446)
+. .+++ +.+. .+.++.++++|.+-+.+|+|-.+|.|..+.-. .|....-......+|+.+++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 64 2333 2222 25678999999999999999999999888521 12222222234579999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee-cccc
Q 013282 327 HPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI-DFFG 404 (446)
Q Consensus 327 ~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~ 404 (446)
..+++.++....-..|.+|.+.........+..|...++|-.|++....+++|+.. .|.+|+.........+. +|..
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeE
Confidence 99888744444456799999964332345577788889999998866656666544 49999987555555554 4543
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.5e-08 Score=90.12 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=143.1
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeC-CCcEEEEecCcce
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN-DCGVRDFDMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~-dg~v~iwd~~~~~ 268 (446)
.|+.+.+ ..+++++++.||.++.|.-..-......+-+..|.+.+.++.. +-++- ++.+.+. |..++++|++...
T Consensus 11 ~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~--S~dg~-L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 11 VITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV--SYDGW-LFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred eeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc--cccce-eEeeccCcccceeEEEeeccc
Confidence 3555555 7799999999999999987653322223445567777777776 66665 6777677 9999999999887
Q ss_pred eeEeee---CCCCeeEEEECCC-CC-EEEE-EecCCcEEEEECCCCc-eE-EEecCCCCceeEEEECCCCCEEEEEeCCC
Q 013282 269 LSKHFR---FPWPVNHSSQSPD-GK-LLII-VGDNPDGLLVDSMTGK-TI-ASLCGHLDFSFASAWHPNGVTFATGNQDK 340 (446)
Q Consensus 269 ~~~~~~---~~~~v~~~~~sp~-~~-~l~~-~~~d~~i~i~d~~~~~-~~-~~~~~~~~~v~~~~~~p~~~~l~sgs~d~ 340 (446)
.+..++ .++.+..+- +|. .. .+++ .-.++.+.++|-.... .. ..-+-|..+|.++.++|.+..+++....|
T Consensus 88 minmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred hhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 766555 334333222 331 11 3333 3468999999987443 33 33345999999999999999999999999
Q ss_pred cEEEEEccCC----Cc-c---------eEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeE
Q 013282 341 TCRIWDLRNL----SE-S---------VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEK 396 (446)
Q Consensus 341 ~v~iwd~~~~----~~-~---------~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~ 396 (446)
.|.-|..... .. . +..+........++.|+|+|..+++-+.|..|+++++++|+.+
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 9999998521 11 1 1112223456789999999999999999999999999988643
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.79 E-value=6e-06 Score=87.56 Aligned_cols=227 Identities=11% Similarity=0.090 Sum_probs=145.8
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEE----EcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICK----HLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw----~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~ 264 (446)
.|.++.+ +...|+.+..+|.|.+. +..... ......-...|.+++| ||++. +++..+.+++|.+..-
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E~VG~vd~GI~a~~W--SPD~E-lla~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IEIVGSVDSGILAASW--SPDEE-LLALVTGEGNLLLMTR 149 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eEEEEEEcCcEEEEEE--CCCcC-EEEEEeCCCEEEEEec
Confidence 6888888 88889999999999998 433332 2222233445666666 99998 5666667787776531
Q ss_pred C---------------c--------ceeeEeee-------------------------CCCCeeEEEECCCCCEEEEEec
Q 013282 265 G---------------K--------YQLSKHFR-------------------------FPWPVNHSSQSPDGKLLIIVGD 296 (446)
Q Consensus 265 ~---------------~--------~~~~~~~~-------------------------~~~~v~~~~~sp~~~~l~~~~~ 296 (446)
. . |+....|. ....-..++|..||.++|+.+-
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 1 0 01000110 1112346889999999998764
Q ss_pred ---C---CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC---CCcEEEEEccCCCcceEEEe----cCCCc
Q 013282 297 ---N---PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNLSESVAVLK----GNLGA 363 (446)
Q Consensus 297 ---d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~---d~~v~iwd~~~~~~~~~~~~----~~~~~ 363 (446)
. ..+++|+.. |....+-+.-.+--.+++|.|.|++||+.-. ...|.+|.- + +.....|. .....
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-N-GLrhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-N-GLRHGEFTLRFDPEEEK 306 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-C-CcEeeeEecCCCCCCce
Confidence 2 578999954 7655554433444467899999999998865 345666765 3 33333332 23457
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEcCCCe--eEeEeec-cccCeEEEEEcCCCC-cEEEEEecCCcc
Q 013282 364 IRSIRYTSDGRYMATAEPADFVHVYDVKSGY--EKEQEID-FFGEISGISFSPDTE-SLFIGVWDRTYG 428 (446)
Q Consensus 364 v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~--~~~~~~~-~~~~v~~~~~spdg~-~l~~~~~D~~~~ 428 (446)
|..|+|++|+..||....+. |.+|-..+-. ..+.+.- ....+..+.|+|... .|.+...++.+.
T Consensus 307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE 374 (928)
T ss_pred eeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence 99999999999999977666 9999887642 3333332 223455699999544 466665555543
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=2.1e-08 Score=62.12 Aligned_cols=39 Identities=38% Similarity=0.764 Sum_probs=37.0
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 308 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
++++.++.+|...|.+++|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.78 E-value=5e-08 Score=83.78 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=98.4
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEE-----eCCCcEEEEecC
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-----NNDCGVRDFDMG 265 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~-----s~dg~v~iwd~~ 265 (446)
+...++..++.+++|+.||.+.+++.+..- ....+....|.+... .++ -..+. ++.++ ..-+..++|+++
T Consensus 93 p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~-~~~~~i~~~~~~~as-~~~--~~~~~-~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 93 PNDACTMTDNRVCIGYADGSLAVFSTDKDL-ALMSRIPSIHSGSAS-RKI--CRHGN-SILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred CcccccccCCceEecCCCceEEEEechHHH-hhhhhcccccccccc-cce--eeccc-EEecCCcceEeeccceeeeccc
Confidence 455556678889999999999999876521 111111111211111 111 11222 22222 122345556654
Q ss_pred cceeeEe-eeCCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCce-EEEecCCCCceeEEEECC-CCCEEEEEeCCCc
Q 013282 266 KYQLSKH-FRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT-IASLCGHLDFSFASAWHP-NGVTFATGNQDKT 341 (446)
Q Consensus 266 ~~~~~~~-~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~p-~~~~l~sgs~d~~ 341 (446)
..+.+.. ......|.+++-+| +...+++|+++|.+-+||.+.... +..++.|+..+..+-||| ++..|++++.||.
T Consensus 168 p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 168 PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 4332221 12334499999999 555678889999999999997643 445678999999999999 8889999999999
Q ss_pred EEEEEcc
Q 013282 342 CRIWDLR 348 (446)
Q Consensus 342 v~iwd~~ 348 (446)
+-.||..
T Consensus 248 lw~wdas 254 (319)
T KOG4714|consen 248 LWHWDAS 254 (319)
T ss_pred EEEEcCC
Confidence 9999984
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.78 E-value=3.3e-06 Score=75.97 Aligned_cols=207 Identities=16% Similarity=0.124 Sum_probs=129.5
Q ss_pred CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCC
Q 013282 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD 287 (446)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 287 (446)
+|+|..||..++...............+.. . .+.+. .+++++.++.|+.||..+|+.+..+..+.++.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~---~~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-A---VPDGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-E---EEETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-E---EEeCC-EEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eec
Confidence 678889998777655544331112222211 1 22344 47777899999999999999998888655544332 224
Q ss_pred CCEEEEEecCCcEEEEECCCCceEEEe-cCCC---CceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCc
Q 013282 288 GKLLIIVGDNPDGLLVDSMTGKTIASL-CGHL---DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGA 363 (446)
Q Consensus 288 ~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~---~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~ 363 (446)
+..+++++.++.++.+|..+|+.+... .... ...........+..++.+..++.|..+|+++ ++.+.........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~ 154 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT-GKLLWKYPVGEPR 154 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT-TEEEEEEESSTT-
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC-CcEEEEeecCCCC
Confidence 566777778889999999999998884 3221 1112222223478889998899999999976 7777766653322
Q ss_pred ----------eEEEEEccCCCEEEEEeCCCe-EEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCC
Q 013282 364 ----------IRSIRYTSDGRYMATAEPADF-VHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 364 ----------v~~l~~s~dg~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
+.+-....++ .++.++.++. +.+ |+.+++.+.... ...+.. ...+.+..|+++..++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCE
Confidence 1122222345 6666777775 555 999998654222 222332 14567788888875543
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.75 E-value=2.4e-07 Score=92.44 Aligned_cols=177 Identities=13% Similarity=0.088 Sum_probs=135.7
Q ss_pred EEEEEeCCCcEEEEecCcceeeEeeeC-CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEEC
Q 013282 249 HFTASNNDCGVRDFDMGKYQLSKHFRF-PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 327 (446)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 327 (446)
.++.|+....+..+|+.+.+..+.... ...|.-|+ .+++.+.+|...|+|.+-|+++.+.++++..|++.|..+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence 577888888899999999988887773 33455555 46789999999999999999999999999999999976554
Q ss_pred CCCCEEEEEeC---------CCcEEEEEccCCCcceEEEecCCCceEEEEEccCC-CEEEEEeCCCeEEEEEc---CCCe
Q 013282 328 PNGVTFATGNQ---------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDG-RYMATAEPADFVHVYDV---KSGY 394 (446)
Q Consensus 328 p~~~~l~sgs~---------d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~~~dg~i~iwd~---~~~~ 394 (446)
.|+.|++++. |.-|+|||+|+. +.+.-+.-+.++ .-+.|.|.- ..+++++..|+..+-|. .+..
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 7889999875 455899999873 444444433333 567888864 57888999999999993 3331
Q ss_pred -eEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 395 -EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 395 -~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
.+..+......+..+.+|++|+.|+.|-.+|.+-.|-
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2233333445599999999999999999998887665
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1e-07 Score=89.86 Aligned_cols=262 Identities=13% Similarity=0.086 Sum_probs=161.9
Q ss_pred CeEEEecCCeEEEEecCCCCc-----eEEEecCCCCCCCCCCCCCccccCccceEEEEEe--CCcEEEEeccCCcEEEEE
Q 013282 143 HDVYLMSHFSVIHWSSLTSSR-----SQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--KDKLLVAGGFQGELICKH 215 (446)
Q Consensus 143 ~~v~~~~~~~i~~w~~~~~~~-----~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--~~~~l~tg~~dg~i~vw~ 215 (446)
.-+..+.|.+++.|+..+.-. ...+....|. .+|..+.+ +-+++++ .||.|.+||
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk----------------k~i~~igfL~~lr~i~S--cD~giHlWD 810 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK----------------KPIHDIGFLADLRSIAS--CDGGIHLWD 810 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhcc----------------Ccccceeeeeccceeee--ccCcceeec
Confidence 345556688899999755421 1222333222 25777777 4455554 578899999
Q ss_pred cCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEE-eCCCcEEEEecCcceeeEeee------CCCCeeEEEECCCC
Q 013282 216 LDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKYQLSKHFR------FPWPVNHSSQSPDG 288 (446)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~sp~~ 288 (446)
.--+.......--..+ +.+..+...-+-+.. +++++ +...+|+++|.+.+.....++ ....+.++++.|.|
T Consensus 811 PFigr~Laq~~dapk~-~a~~~ikcl~nv~~~-iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAPKE-GAGGNIKCLENVDRH-ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred ccccchhHhhhcCccc-CCCceeEecccCcch-heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence 7554432211111122 222333321122333 44444 788999999998877666655 23458899999999
Q ss_pred CEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEE-EEccCCCcceEEEecCCCceEEE
Q 013282 289 KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI-WDLRNLSESVAVLKGNLGAIRSI 367 (446)
Q Consensus 289 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~i-wd~~~~~~~~~~~~~~~~~v~~l 367 (446)
++++++-.+|.|.+.|.++|+.+.....-......++ .|..+.++....|.++.+ |..-. +....+.+....+..-+
T Consensus 889 N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald-gimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 889 NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcchhhh
Confidence 9999999999999999999999988776555555555 466677888888888888 87743 44334443322222111
Q ss_pred EEccCCCEEEEEeCCCeEEEEEcCCC----eeEeEe--eccccCeEEEEEcCCCCcEEEEEecCCcc
Q 013282 368 RYTSDGRYMATAEPADFVHVYDVKSG----YEKEQE--IDFFGEISGISFSPDTESLFIGVWDRTYG 428 (446)
Q Consensus 368 ~~s~dg~~l~~~~~dg~i~iwd~~~~----~~~~~~--~~~~~~v~~~~~spdg~~l~~~~~D~~~~ 428 (446)
-.-|.-|+++.....+.+|--... ..+..+ ....+..+.++--|-...+++|...|.+.
T Consensus 967 --qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 967 --QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIA 1031 (1034)
T ss_pred --hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCcee
Confidence 223556777776667777742111 011111 12456788888888777777777777654
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=5.3e-07 Score=89.01 Aligned_cols=170 Identities=17% Similarity=0.171 Sum_probs=123.6
Q ss_pred eEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEEC
Q 013282 248 VHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH 327 (446)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 327 (446)
.+|+-|+..|.|++++....- ...+.|... ..+|.++++|+.||+|.|..+-+.+...++. ...++.+++++
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~ 121 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALH 121 (846)
T ss_pred ceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEec
Confidence 379999999999999975433 334444333 5689999999999999999998888777665 55789999999
Q ss_pred CC-----CCEEEEEeCCCcEEEEEccCCCcceE-EEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec
Q 013282 328 PN-----GVTFATGNQDKTCRIWDLRNLSESVA-VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 401 (446)
Q Consensus 328 p~-----~~~l~sgs~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 401 (446)
|+ .+.+++|+.-| +.++.-+-.+.... .+..-.|+|.++.|. |.++|-++..| |+|||+.+++.+..+..
T Consensus 122 Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 122 PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred cchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCC
Confidence 97 57899999988 88877543232222 355567899999996 77999999888 99999998876655443
Q ss_pred ccc------CeEEEEEcCCCCcEEEEEecCCcceEE
Q 013282 402 FFG------EISGISFSPDTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 402 ~~~------~v~~~~~spdg~~l~~~~~D~~~~~~l 431 (446)
... -...+.|.++.+ |++ ||-.++..+-
T Consensus 198 p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~ 231 (846)
T KOG2066|consen 198 PSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICS 231 (846)
T ss_pred CCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEE
Confidence 222 234577877643 443 4555555543
No 306
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.70 E-value=8.2e-07 Score=85.83 Aligned_cols=181 Identities=16% Similarity=0.153 Sum_probs=119.2
Q ss_pred eCCCCCeEEEEEeCC---CcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEe-cCC--cEEEEECCCCceEEEec
Q 013282 242 GSPSGAVHFTASNND---CGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVG-DNP--DGLLVDSMTGKTIASLC 315 (446)
Q Consensus 242 ~s~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~ 315 (446)
|+|++..+.+..-.. ..+.++++.+++..........-...+|+|||++|+.+. .+| .|+++|+.+++ +..+.
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt 278 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLT 278 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecc
Confidence 488887655554333 359999999988877777777777889999999887654 344 56777888776 33455
Q ss_pred CCCCceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCC-Ce--EEEEEcC
Q 013282 316 GHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-DF--VHVYDVK 391 (446)
Q Consensus 316 ~~~~~v~~~~~~p~~~~l~sgs~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d-g~--i~iwd~~ 391 (446)
...+.-..-.|+|+|++++..+. .|.-.||-+...+.....+....+.-..-.|+|||++|+..+.. |. |.+.|+.
T Consensus 279 ~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 279 NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 44444446789999999887765 45444444433344445555444444478899999999877743 44 7777777
Q ss_pred CCeeEeEeeccccCeEEEEEcCCCCcEEEEEec
Q 013282 392 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 392 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D 424 (446)
++.. .+............|.|+|..+...+.-
T Consensus 359 ~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 359 SGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 6654 2333344445566778887776654433
No 307
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=4.6e-06 Score=82.18 Aligned_cols=229 Identities=13% Similarity=0.080 Sum_probs=160.8
Q ss_pred cCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe--------------CCcEEEEecc
Q 013282 142 KHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV--------------KDKLLVAGGF 207 (446)
Q Consensus 142 ~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~--------------~~~~l~tg~~ 207 (446)
.+.+.+.+...|.+-|+.+-+..+.+..... .|+.+.| ..-+||++..
T Consensus 26 ~GLiAygshslV~VVDs~s~q~iqsie~h~s------------------~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 26 SGLIAYGSHSLVSVVDSRSLQLIQSIELHQS------------------AVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred cceEEEecCceEEEEehhhhhhhhccccCcc------------------ceeEEEeccCCCchhccCccccceeEEeccc
Confidence 3455555667777888777665555544321 2333333 1246888899
Q ss_pred CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCC-eEEEEEeCCCcEEEEecCcceeeEeee-CCCCeeEEEEC
Q 013282 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGA-VHFTASNNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQS 285 (446)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~s 285 (446)
.|.|.+||....... .-+.++..++..+.|++..+.. .+|++-....+|.+|+..+|+.+..+. ......|+.+.
T Consensus 88 ~GrIil~d~~~~s~~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D 164 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVI---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVD 164 (1062)
T ss_pred cCcEEEEEehhhhhh---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence 999999999776433 4456788888899988877665 567777778899999999999998888 45567789999
Q ss_pred C-CCCEEEEEecCCcEEEEECC-------CCceEEEecCCCC-------------------------ceeEEEECCCCCE
Q 013282 286 P-DGKLLIIVGDNPDGLLVDSM-------TGKTIASLCGHLD-------------------------FSFASAWHPNGVT 332 (446)
Q Consensus 286 p-~~~~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~-------------------------~v~~~~~~p~~~~ 332 (446)
| |.+.+..-+..|.+.+.+.- .|+..+.-..|.+ ....++|+|.-+.
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 9 77888777777777777643 1233322222222 1123677886555
Q ss_pred EEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCC--EEEEEeCCCeEEEEEcCC
Q 013282 333 FATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR--YMATAEPADFVHVYDVKS 392 (446)
Q Consensus 333 l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~~~~~dg~i~iwd~~~ 392 (446)
++.......+.|+|+.- ..++.+..-..+.+.-+.|-|+++ .|++.-.||.+.+|--+.
T Consensus 245 ~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 55556677899999965 677888777777788888888875 788999999999996543
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.65 E-value=8.9e-08 Score=59.25 Aligned_cols=38 Identities=26% Similarity=0.614 Sum_probs=36.2
Q ss_pred cceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 013282 352 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 389 (446)
Q Consensus 352 ~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd 389 (446)
+++.++.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999997
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1e-05 Score=79.72 Aligned_cols=238 Identities=11% Similarity=0.026 Sum_probs=166.6
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEe--------CCC-CCeEEEEEeCCCcEE
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYG--------SPS-GAVHFTASNNDCGVR 260 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~--------s~~-~~~~l~s~s~dg~v~ 260 (446)
.-.++.| .+.+||.|+-. .|.|-|..+-+. ......|...|+.+.|.. +|. ...+|+++.-.|.|.
T Consensus 17 N~~A~Dw~~~GLiAygshs-lV~VVDs~s~q~---iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAYGSHS-LVSVVDSRSLQL---IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccCccceEEEecCc-eEEEEehhhhhh---hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3456667 66778877754 466667655433 355667888888888742 222 344677778889999
Q ss_pred EEecCcceeeEeee-CCCCeeEEEECC---CC-CEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC-CCCEEE
Q 013282 261 DFDMGKYQLSKHFR-FPWPVNHSSQSP---DG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP-NGVTFA 334 (446)
Q Consensus 261 iwd~~~~~~~~~~~-~~~~v~~~~~sp---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~ 334 (446)
+||...+..+..+. +..++..++|-| +. ..|++-.....+.+|+..+|+.+...........|+.+.| +.+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 99999988888887 678899999876 44 4667777788999999999999888776667788899999 777777
Q ss_pred EEeCCCcEEEEEccCC------CcceEEEecCCC-----------------c--------eEEEEEccCCCEEEEEeCCC
Q 013282 335 TGNQDKTCRIWDLRNL------SESVAVLKGNLG-----------------A--------IRSIRYTSDGRYMATAEPAD 383 (446)
Q Consensus 335 sgs~d~~v~iwd~~~~------~~~~~~~~~~~~-----------------~--------v~~l~~s~dg~~l~~~~~dg 383 (446)
.-+..|.+.+-+.-.. ++..+.-..|+. + .-.++|+|.-+.+.......
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 7667777777665221 122222222221 0 11256788877666667777
Q ss_pred eEEEEEcCCCeeEeEeeccccCeEEEEEcCCCC--cEEEEEecCCcceEEE
Q 013282 384 FVHVYDVKSGYEKEQEIDFFGEISGISFSPDTE--SLFIGVWDRTYGSLLE 432 (446)
Q Consensus 384 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~~~~~D~~~~~~l~ 432 (446)
.+.|+|++-..++....-..+.+.-+.+-|+++ .|+..-.||.+..+..
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 799999987777777766666666677777654 5888888888765543
No 310
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.2e-06 Score=83.06 Aligned_cols=178 Identities=17% Similarity=0.161 Sum_probs=129.2
Q ss_pred EEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEec-----------CCcEEEEECCCC
Q 013282 240 IYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD-----------NPDGLLVDSMTG 308 (446)
Q Consensus 240 ~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----------d~~i~i~d~~~~ 308 (446)
+.|||.|. +|++- .-..|.+|--+....++.|.|++ |..+.|||..++|++-+. ...++|||+++|
T Consensus 216 v~wSP~GT-YL~t~-Hk~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 216 VRWSPKGT-YLVTF-HKQGIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred EEecCCce-EEEEE-eccceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 34499998 57766 44558999988888888888887 999999999999998642 367999999999
Q ss_pred ceEEEecCCC---CceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeC----
Q 013282 309 KTIASLCGHL---DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP---- 381 (446)
Q Consensus 309 ~~~~~~~~~~---~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~---- 381 (446)
...+.+.... ....-..||.|++++|--..+ +|.||+..+ -.++..-.-....|....|+|.+..||-=..
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 9888876522 223446899999999977664 699999844 2222211223456888999999998874332
Q ss_pred -CCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 382 -ADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 382 -dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
-..+.+-.+.+++.++...-+.-.=..+.|-.+|.+|++-.
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence 23477777777776665554444445678889999998654
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=2.1e-07 Score=83.15 Aligned_cols=152 Identities=11% Similarity=0.069 Sum_probs=111.4
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-----ceeeEe
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-----YQLSKH 272 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~ 272 (446)
.+-. ++.|.+-.|-+-++.++-.. .+ ..++.|-++.| ...+. +++.|...|.|..+|++. +.+...
T Consensus 224 ~gyh-fs~G~sqqv~L~nvetg~~q----sf-~sksDVfAlQf--~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 224 MGYH-FSVGLSQQVLLTNVETGHQQ----SF-QSKSDVFALQF--AGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred ceee-ecccccceeEEEEeeccccc----cc-ccchhHHHHHh--cccCC-eeEecccCCcEEEEEeeecccCCCcceEE
Confidence 3444 34444555667677765322 11 24456777777 44444 799999999999999975 356777
Q ss_pred eeCCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCce---EEEecCCCCceeE--EEECCCCCEEEEEeCCCcEEEEE
Q 013282 273 FRFPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSMTGKT---IASLCGHLDFSFA--SAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 273 ~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~--~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
+.|+..|+++..-. ++.+|++.+.+|+|.+||++.-++ +.+..||.....- +-.+|....++++++|...|||.
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 78999999998776 788999999999999999986666 8888888653322 33456667888899999999999
Q ss_pred ccCCCcceEEEec
Q 013282 347 LRNLSESVAVLKG 359 (446)
Q Consensus 347 ~~~~~~~~~~~~~ 359 (446)
++. +..+.+++.
T Consensus 375 l~~-ghLl~tipf 386 (425)
T KOG2695|consen 375 LDS-GHLLCTIPF 386 (425)
T ss_pred ccc-CceeeccCC
Confidence 976 777777654
No 312
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.61 E-value=2.3e-05 Score=76.24 Aligned_cols=216 Identities=14% Similarity=0.074 Sum_probs=130.7
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCC--CceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN--AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 275 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 275 (446)
.+..++.+..+|.|..+|..+++............ .......+ . + . .++.++.+|.+..+|..+++.+.....
T Consensus 159 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~-~-~-~v~~~~~~g~v~a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 159 SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--A-F-G-GAIVGGDNGRVSAVLMEQGQLIWQQRI 233 (394)
T ss_pred ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--E-C-C-EEEEEcCCCEEEEEEccCChhhheecc
Confidence 35667778889999999998887654332210000 00011111 1 2 2 366677889999999999988776542
Q ss_pred CCC--------eeEEEECC--CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 276 PWP--------VNHSSQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 276 ~~~--------v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
..+ ...+..+| .+..+++++.++.++.+|+.+|+.+....- .....+.. .+..++.++.+|.+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~al 309 (394)
T PRK11138 234 SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYAL 309 (394)
T ss_pred ccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEE
Confidence 111 11122233 356677788899999999999988765431 11111222 45678888889999999
Q ss_pred EccCCCcceEEEecCC-CceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeE-EEEEcCCCCcEEEEEe
Q 013282 346 DLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEIS-GISFSPDTESLFIGVW 423 (446)
Q Consensus 346 d~~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~ 423 (446)
|..+ ++.+-....-. ....+... .+.+|+.++.+|.|++.|..+|+.+.+..-....+. ...+ .+..|++++.
T Consensus 310 d~~t-G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~ 384 (394)
T PRK11138 310 DTRG-GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQAR 384 (394)
T ss_pred ECCC-CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeC
Confidence 9965 55443322111 11222222 245678889999999999999987766543322222 2222 2457888888
Q ss_pred cCCc
Q 013282 424 DRTY 427 (446)
Q Consensus 424 D~~~ 427 (446)
||.+
T Consensus 385 ~G~l 388 (394)
T PRK11138 385 DGTV 388 (394)
T ss_pred CceE
Confidence 8754
No 313
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=8.2e-07 Score=78.29 Aligned_cols=195 Identities=9% Similarity=0.140 Sum_probs=128.5
Q ss_pred eEEEEEe----CCcEEEEeccCCcEEEEEcCCCCe----------------------------------------eeEEE
Q 013282 191 QVSTLAV----KDKLLVAGGFQGELICKHLDRPGV----------------------------------------SFCSR 226 (446)
Q Consensus 191 ~v~~l~~----~~~~l~tg~~dg~i~vw~~~~~~~----------------------------------------~~~~~ 226 (446)
.|..+.| ..+.++..+.|.+|++|.+..... ..|..
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 4666666 335677778899999998754310 00111
Q ss_pred EeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee---Eeee-C-----CCCeeEEEECCC-CCEEEEEec
Q 013282 227 TTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS---KHFR-F-----PWPVNHSSQSPD-GKLLIIVGD 296 (446)
Q Consensus 227 ~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~-~-----~~~v~~~~~sp~-~~~l~~~~~ 296 (446)
....|.-.++++.+ ..+.. .++++ .|-.|.+|+++-..-. .-++ + ..-|++..|+|. -+.+...+.
T Consensus 167 yaNaH~yhiNSiS~--NsD~e-t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 167 YANAHPYHINSISF--NSDKE-TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred ccccceeEeeeeee--cCchh-eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 11345556677766 55654 35544 7888999988642211 1111 1 234888999994 456778888
Q ss_pred CCcEEEEECCCCce------EEE----------ecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecC
Q 013282 297 NPDGLLVDSMTGKT------IAS----------LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN 360 (446)
Q Consensus 297 d~~i~i~d~~~~~~------~~~----------~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~ 360 (446)
.|.|++-|++.... +.. +.+-...|..+.|+|+|+++++-.. -+|+|||.+....++.++.-|
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 99999999984321 111 1122356788999999999987654 489999999888899888655
Q ss_pred CC------------ce---EEEEEccCCCEEEEEeCCCeEEEEEc
Q 013282 361 LG------------AI---RSIRYTSDGRYMATAEPADFVHVYDV 390 (446)
Q Consensus 361 ~~------------~v---~~l~~s~dg~~l~~~~~dg~i~iwd~ 390 (446)
.. +| -.+.||.|.+.+.+|+..+..-||-+
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 32 22 24788888888999888777666653
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.58 E-value=8.2e-06 Score=78.62 Aligned_cols=88 Identities=22% Similarity=0.383 Sum_probs=70.0
Q ss_pred EEEecCccee----eEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEE
Q 013282 260 RDFDMGKYQL----SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 335 (446)
Q Consensus 260 ~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s 335 (446)
.+|++...+. +..+..+..+.|.+++|+...|+.|+.||.|.+||...+... +....-..+.++|||+|.++++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence 3566655443 233447889999999999999999999999999998766433 2234455688999999999999
Q ss_pred EeCCCcEEEEEccC
Q 013282 336 GNQDKTCRIWDLRN 349 (446)
Q Consensus 336 gs~d~~v~iwd~~~ 349 (446)
|+.-|.+.+||+.-
T Consensus 317 ~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 317 GSEQGELQCFDMAL 330 (545)
T ss_pred EcCCceEEEEEeec
Confidence 99999999999853
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.55 E-value=0.00017 Score=63.56 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=108.2
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEee------cCCCceeeEEEEeCCCC---CeEEEEEeCCCcE
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY------DDNAITNAVEIYGSPSG---AVHFTASNNDCGV 259 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~------~~~~~v~~i~~~~s~~~---~~~l~s~s~dg~v 259 (446)
+-.-++| |+.+||.+...|+|++||+..... ..+.. .-...|..+.|.-.... ...|++-...|.+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l---f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL---FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccccee---EEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 3555555 999999999999999999965431 11111 11233444444211111 1235555678888
Q ss_pred EEEecC-----cceeeEeee----CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEE---C
Q 013282 260 RDFDMG-----KYQLSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAW---H 327 (446)
Q Consensus 260 ~iwd~~-----~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~---~ 327 (446)
+-|-+. ..+..+.|. ++..|+++.++|.-++|++||.... +.+. -++....+++-.. .
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDS 191 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCC
Confidence 877652 344445554 4778999999999998888764322 0000 0011111221111 1
Q ss_pred CCCCEEEEEeCCC------cEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee
Q 013282 328 PNGVTFATGNQDK------TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 400 (446)
Q Consensus 328 p~~~~l~sgs~d~------~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~ 400 (446)
|..+. ++...|+ +..+|.+-+ .+...........|..+..||||..||+...+|.|.+|++.+.+......
T Consensus 192 Pyyk~-v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 192 PYYKQ-VTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CcEEE-ccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 11111 1111111 112333211 11111112235679999999999999999999999999998876554443
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.52 E-value=0.00011 Score=66.70 Aligned_cols=190 Identities=20% Similarity=0.180 Sum_probs=127.3
Q ss_pred CCCCCeEEEEEeCCCc-EEEEecCcceeeEeeeCCCC---eeEEEECCCCCEEEEEe-----cCCcEEEEECC-CCceEE
Q 013282 243 SPSGAVHFTASNNDCG-VRDFDMGKYQLSKHFRFPWP---VNHSSQSPDGKLLIIVG-----DNPDGLLVDSM-TGKTIA 312 (446)
Q Consensus 243 s~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~---v~~~~~sp~~~~l~~~~-----~d~~i~i~d~~-~~~~~~ 312 (446)
+|.....++.+-.-|+ ..+||..+++....+..+.. --.-.|||||++|++.- ..|.|-|||.. +-+.+.
T Consensus 13 ~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~ 92 (305)
T PF07433_consen 13 HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG 92 (305)
T ss_pred CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe
Confidence 7766556667766664 67899999998887763222 12578999999998863 46889999998 667788
Q ss_pred EecCCCCceeEEEECCCCCEEEEEe------------------CCCcEEEEEccCCCcceEE--E--ecCCCceEEEEEc
Q 013282 313 SLCGHLDFSFASAWHPNGVTFATGN------------------QDKTCRIWDLRNLSESVAV--L--KGNLGAIRSIRYT 370 (446)
Q Consensus 313 ~~~~~~~~v~~~~~~p~~~~l~sgs------------------~d~~v~iwd~~~~~~~~~~--~--~~~~~~v~~l~~s 370 (446)
.+..|.-.-..+.+.|+|+.|+++. .+..+.+.|.++ ++.+.. + .-|...|+.+++.
T Consensus 93 E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecCccccccceeeEEec
Confidence 8887766667888999998888764 222455566644 565555 3 2366789999999
Q ss_pred cCCCEEEEEeCCC-------eEEEEEcCCCeeEeEe-----eccccCeEEEEEcCCCCcEEEE--------EecCCcceE
Q 013282 371 SDGRYMATAEPAD-------FVHVYDVKSGYEKEQE-----IDFFGEISGISFSPDTESLFIG--------VWDRTYGSL 430 (446)
Q Consensus 371 ~dg~~l~~~~~dg-------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~spdg~~l~~~--------~~D~~~~~~ 430 (446)
++|..++..-..| .|-++........... ....+.+-+|+++++|..++++ .||...+.+
T Consensus 172 ~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 172 GDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred CCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 9998665443333 2555543332111111 1244679999999999988755 455555555
Q ss_pred EEE
Q 013282 431 LEY 433 (446)
Q Consensus 431 l~~ 433 (446)
+..
T Consensus 252 ~~~ 254 (305)
T PF07433_consen 252 LGS 254 (305)
T ss_pred eec
Confidence 433
No 317
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.50 E-value=1.6e-05 Score=81.27 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=92.3
Q ss_pred ccceeeccceeeeEEecccCeEEEecCCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEe------
Q 013282 124 VKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAV------ 197 (446)
Q Consensus 124 v~~~~~h~~~~~l~~~~~~~~v~~~~~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~------ 197 (446)
++-+..|.+-++++.-... ...+++..|+..++...-..+.... +|..+++
T Consensus 483 P~k~mL~~~d~~mil~~~~------~~~~ly~mDLe~GKVV~eW~~~~~~-----------------~v~~~~p~~K~aq 539 (794)
T PF08553_consen 483 PKKAMLHDQDRNMILLDPN------NPNKLYKMDLERGKVVEEWKVHDDI-----------------PVVDIAPDSKFAQ 539 (794)
T ss_pred cchhhhhccccceEeecCC------CCCceEEEecCCCcEEEEeecCCCc-----------------ceeEecccccccc
Confidence 4445566666766655422 1234556666666555544444221 2444443
Q ss_pred -CCcEEEEeccCCcEEEEEcCCCCeeeEEEEe---ecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEee
Q 013282 198 -KDKLLVAGGFQGELICKHLDRPGVSFCSRTT---YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF 273 (446)
Q Consensus 198 -~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~---~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 273 (446)
...-...|-.+..|..||.+-.+... .... ......-++++. +.+| .|++|+.+|.||+||-...+....+
T Consensus 540 lt~e~tflGls~n~lfriDpR~~~~k~-v~~~~k~Y~~~~~Fs~~aT--t~~G--~iavgs~~G~IRLyd~~g~~AKT~l 614 (794)
T PF08553_consen 540 LTNEQTFLGLSDNSLFRIDPRLSGNKL-VDSQSKQYSSKNNFSCFAT--TEDG--YIAVGSNKGDIRLYDRLGKRAKTAL 614 (794)
T ss_pred cCCCceEEEECCCceEEeccCCCCCce-eeccccccccCCCceEEEe--cCCc--eEEEEeCCCcEEeecccchhhhhcC
Confidence 23345667777788899987654211 1100 112223344444 5666 6999999999999995433333444
Q ss_pred e-CCCCeeEEEECCCCCEEEEEecCCcEEEEEC
Q 013282 274 R-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS 305 (446)
Q Consensus 274 ~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 305 (446)
. ...||..|.++.||+++++.+.. .+.|++.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 4 57899999999999999877754 6777775
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=1.5e-05 Score=78.81 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=103.2
Q ss_pred CCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEec--------------------------
Q 013282 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD-------------------------- 296 (446)
Q Consensus 243 s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------------------------- 296 (446)
+|+|+.+..+.-..+.+.+.|.++.+....+.-......+.++|+|+++++.+.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ 280 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR 280 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH
Confidence 456653333444456777888888888887776666778888999988877651
Q ss_pred --------------CCcEEEEECCC-----CceEEEecCCCCceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCc----
Q 013282 297 --------------NPDGLLVDSMT-----GKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSE---- 352 (446)
Q Consensus 297 --------------d~~i~i~d~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~~v~iwd~~~~~~---- 352 (446)
++.|.++|.++ .+.+..+. -......++++|||+++++++. +.+|.|.|+.+...
T Consensus 281 iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 281 IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 24477777776 23444443 2334567899999999887766 89999999976332
Q ss_pred -------ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 013282 353 -------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 353 -------~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~ 392 (446)
.+.....-.+ ....+|.++|....+-..|..|..||+.+
T Consensus 360 ~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1233333233 34688999998888888999999999876
No 319
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.43 E-value=0.00057 Score=60.37 Aligned_cols=216 Identities=13% Similarity=0.018 Sum_probs=116.1
Q ss_pred CCcEEEEeccCCcEEEEEcCCCC--eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee-
Q 013282 198 KDKLLVAGGFQGELICKHLDRPG--VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR- 274 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 274 (446)
+|++||. -.|..|.+-.....- ......+..+....-.-+ .|||++. +|+.+...|+|++||+....+. .+.
T Consensus 8 ~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl--~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf-~I~p 82 (282)
T PF15492_consen 8 DGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKL--AWSPDCT-LLAYAESTGTIRVFDLMGSELF-VIPP 82 (282)
T ss_pred CCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEE--EECCCCc-EEEEEcCCCeEEEEecccceeE-EcCc
Confidence 4554444 445566665443321 111112222333333344 4599998 7888899999999999754332 222
Q ss_pred -------CCCCeeEEEECCC------CCEEEEEecCCcEEEEECC-----CCceEEEec--C-CCCceeEEEECCCCCEE
Q 013282 275 -------FPWPVNHSSQSPD------GKLLIIVGDNPDGLLVDSM-----TGKTIASLC--G-HLDFSFASAWHPNGVTF 333 (446)
Q Consensus 275 -------~~~~v~~~~~sp~------~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~--~-~~~~v~~~~~~p~~~~l 333 (446)
....|..+.|-+. ...|++....|.++=|-+. ..+..+.+. . +...|.++.++|..++|
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL 162 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence 2345666666442 2256667777777666543 223344433 2 46789999999998888
Q ss_pred EEEeCCCc-EEEEEccCCCcceEEEecCCCceEEEEEccCCCEE--EEEeCCCe------EEEEEcCCCeeEeEeecccc
Q 013282 334 ATGNQDKT-CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYM--ATAEPADF------VHVYDVKSGYEKEQEIDFFG 404 (446)
Q Consensus 334 ~sgs~d~~-v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l--~~~~~dg~------i~iwd~~~~~~~~~~~~~~~ 404 (446)
+.|+.... -..+. +....+++-+.-.+..+. ++...++. ..+|.+-+.+..........
T Consensus 163 lVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d 230 (282)
T PF15492_consen 163 LVGGCEQNQDGMSK------------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD 230 (282)
T ss_pred EEeccCCCCCcccc------------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCC
Confidence 88775432 00110 111223222222221111 11221211 12333333221111122456
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 405 EISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 405 ~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
.|..|..||||..|++...+|.+..|
T Consensus 231 ~i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 231 GIFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred ceEEEEECCCCCEEEEEEcCCeEEEE
Confidence 79999999999999999999887654
No 320
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.43 E-value=6e-08 Score=93.15 Aligned_cols=194 Identities=16% Similarity=0.221 Sum_probs=133.6
Q ss_pred EEEEEe----CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEE----eCCCcEEEEe
Q 013282 192 VSTLAV----KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS----NNDCGVRDFD 263 (446)
Q Consensus 192 v~~l~~----~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~----s~dg~v~iwd 263 (446)
+.|+++ +.-.++.|..+|.|-+-.+..+... ...++..+..+.++++| ++-...+|++| -.|..+.|||
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAw--neLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAW--NELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceeccccccccccccc--ccccHHHHHhhhhhhcccCCcccee
Confidence 556665 4467899999999999887665432 23455667777788877 66555567776 3567899999
Q ss_pred cCcc--eeeEeee----CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-ceEEEecCCCCceeEEEECC-CCCEEEE
Q 013282 264 MGKY--QLSKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHP-NGVTFAT 335 (446)
Q Consensus 264 ~~~~--~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~p-~~~~l~s 335 (446)
+.++ .+..... .....++++|-.+.+++++|.....+.++|++.. .....+ .+..+..+...| .+.++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9876 3322222 2234668888888889999999999999999832 222222 344566777888 7788887
Q ss_pred EeCCCcEEEEE-ccCCCcceEEEecCCC----ceEEEEEccCCC-EEEEEeC-CCeEEEEEcC
Q 013282 336 GNQDKTCRIWD-LRNLSESVAVLKGNLG----AIRSIRYTSDGR-YMATAEP-ADFVHVYDVK 391 (446)
Q Consensus 336 gs~d~~v~iwd-~~~~~~~~~~~~~~~~----~v~~l~~s~dg~-~l~~~~~-dg~i~iwd~~ 391 (446)
-+ ||.|.+|| .++...++..+..... .+..++|+|... .+++... .++|+++|+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 76 99999999 6665555555443333 488999999653 4555554 4689999876
No 321
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.42 E-value=0.00023 Score=69.32 Aligned_cols=190 Identities=14% Similarity=0.084 Sum_probs=119.1
Q ss_pred EeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeC
Q 013282 196 AVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 275 (446)
Q Consensus 196 ~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 275 (446)
...+..++.++.+|.+..+|..+++........ ........+ .+ . .++.+..++.|..+|..+|+.+..+..
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~ssP~v---~~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA---GEALSRPVV---SD-G-LVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCC---CceecCCEE---EC-C-EEEEECCCCEEEEEEccCCCEeeeecC
Confidence 346677888889999999999888765433321 111111112 12 3 466677889999999999999888774
Q ss_pred CCCeeEE--EECC--CCCEEEEEecCCcEEEEECCCCceEEEecCCCC-------ceeEEEECC--CCCEEEEEeCCCcE
Q 013282 276 PWPVNHS--SQSP--DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD-------FSFASAWHP--NGVTFATGNQDKTC 342 (446)
Q Consensus 276 ~~~v~~~--~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~p--~~~~l~sgs~d~~v 342 (446)
..+...+ .-+| .+..+++++.++.+..+|..+|+.+........ ....+.-+| .+..++.++.+|.+
T Consensus 189 ~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 189 DVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL 268 (394)
T ss_pred CCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence 3221110 1123 234577788899999999999987665431110 011112233 35567778889999
Q ss_pred EEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeE
Q 013282 343 RIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 398 (446)
..+|+.+ ++.+..... +....+. ..+..|+.++.+|.|..+|..+|+.+-.
T Consensus 269 ~ald~~t-G~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 269 VALDLRS-GQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred EEEECCC-CCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 9999976 554443321 1111222 2456777788899999999999876543
No 322
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.39 E-value=0.00015 Score=68.43 Aligned_cols=218 Identities=10% Similarity=0.088 Sum_probs=126.2
Q ss_pred cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCC----CeEEEEEeC----------CCcEEEEecCcc-----ee-
Q 013282 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG----AVHFTASNN----------DCGVRDFDMGKY-----QL- 269 (446)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~----~~~l~s~s~----------dg~v~iwd~~~~-----~~- 269 (446)
.|++.|..+...... ..+ ..+..+.++....-+.+ ..+|++|.. .|.|.++++... ++
T Consensus 3 ~i~l~d~~~~~~~~~-~~l-~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDS-FEL-EPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEEEE-EEE-ETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEEEE-EEC-CCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 466777655554322 222 23344555544332321 456776642 288999999873 32
Q ss_pred -eEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-eEEEec-CCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 270 -SKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-TIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 270 -~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
+.....+++|.+++-- .+. |+++. ++.|++|++...+ ....-. .....+.++.. .+++++.|..-..+.++.
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEE
T ss_pred EEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEE
Confidence 2334478889998865 344 44444 4789999998777 433322 12235555554 466999999888888886
Q ss_pred ccCCCcceEEEec--CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCC-------Ce-eEeEe--eccccCeEEE---EE
Q 013282 347 LRNLSESVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS-------GY-EKEQE--IDFFGEISGI---SF 411 (446)
Q Consensus 347 ~~~~~~~~~~~~~--~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~-------~~-~~~~~--~~~~~~v~~~---~~ 411 (446)
.+.....+..+.. ....++++.|-++++.++++..+|.|.++.... +. .+... ......|+++ .+
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 6443333333332 345688898987778999999999999998763 11 22211 2234567777 55
Q ss_pred cCC--CC------cEEEEEecCCcceEEEEe
Q 013282 412 SPD--TE------SLFIGVWDRTYGSLLEYG 434 (446)
Q Consensus 412 spd--g~------~l~~~~~D~~~~~~l~~~ 434 (446)
.|. +. .++.++.+|.++.++.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l 266 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVLIPFL 266 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEEEE-E
T ss_pred eecCCCCcccccceEEEEecCCEEEEEEecC
Confidence 552 22 388889999999887743
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.8e-06 Score=78.67 Aligned_cols=195 Identities=16% Similarity=0.089 Sum_probs=134.2
Q ss_pred CCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc---ceeeEeee-CCCCeeEEEECCCCCEEEEEec-CCcEEEEEC
Q 013282 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK---YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD-NPDGLLVDS 305 (446)
Q Consensus 231 ~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~---~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~ 305 (446)
|...|+.+. +....++++++.||.++.|--.. -+.+..+. |...|.+++.+-++.++.+++. |..++++|+
T Consensus 8 hrd~i~hv~----~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVF----PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEe----eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 444455543 33345899999999999998644 22333333 7778889999999999999887 999999999
Q ss_pred CCCceEEEecC--CCCceeEEEECCC-C-CEEE-EEeCCCcEEEEEccCCCcceEEE-ecCCCceEEEEEccCCCEEEEE
Q 013282 306 MTGKTIASLCG--HLDFSFASAWHPN-G-VTFA-TGNQDKTCRIWDLRNLSESVAVL-KGNLGAIRSIRYTSDGRYMATA 379 (446)
Q Consensus 306 ~~~~~~~~~~~--~~~~v~~~~~~p~-~-~~l~-sgs~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~~~ 379 (446)
.+-..+..++- -.+.+. +..+|. . ..++ +.-.++.+.++|-+....+...+ .-|..+|..+.+.|-+..+++.
T Consensus 84 En~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 86655443332 122221 112221 1 1333 33458899999987655444444 4589999999999999999999
Q ss_pred eCCCeEEEEEcCC------Ce---------eEeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 380 EPADFVHVYDVKS------GY---------EKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 380 ~~dg~i~iwd~~~------~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
...|-|.-|.... .. -+..+........++.|+|+|..+.+-..|..+...
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence 9999999998762 10 011122234578899999999999988888877654
No 324
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.0011 Score=64.08 Aligned_cols=184 Identities=17% Similarity=0.206 Sum_probs=136.0
Q ss_pred eeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEec---CCcEEEEECCCCceEE
Q 013282 236 NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGD---NPDGLLVDSMTGKTIA 312 (446)
Q Consensus 236 ~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~~~~~~~ 312 (446)
..+.+ ++.+.+.++....+..|.+.|..+.+.............++++|+++.+.++.. ++.+.+.|..+++.+.
T Consensus 77 ~~i~v--~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 77 AGVAV--NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cceee--CCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 34455 788887777777789999999888888888875557889999999988876654 6899999999999888
Q ss_pred EecCCCCceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCcceE-----EEecCCCceEEEEEccCCCEEEEEeCC---C
Q 013282 313 SLCGHLDFSFASAWHPNGVTFATGN-QDKTCRIWDLRNLSESVA-----VLKGNLGAIRSIRYTSDGRYMATAEPA---D 383 (446)
Q Consensus 313 ~~~~~~~~v~~~~~~p~~~~l~sgs-~d~~v~iwd~~~~~~~~~-----~~~~~~~~v~~l~~s~dg~~l~~~~~d---g 383 (446)
....-..+ ..+++.|+|..++... .+++|.+.|... ....+ .... ......+.++|+|.++...... +
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCc
Confidence 86544444 8899999999776665 688999999743 32221 1222 2234578999999977766554 5
Q ss_pred eEEEEEcCCCeeEeEeecccc-CeEEEEEcCCCCcEEEEEec
Q 013282 384 FVHVYDVKSGYEKEQEIDFFG-EISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 384 ~i~iwd~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~D 424 (446)
.+...|..++........-.. ....+.++|+|.++++....
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 899999998876655222222 56788999999998887433
No 325
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.36 E-value=6.7e-05 Score=76.93 Aligned_cols=139 Identities=15% Similarity=0.192 Sum_probs=98.8
Q ss_pred EEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCC-------CCEEEEEecCCcEEEEECCC-CceEEEec----C
Q 013282 249 HFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD-------GKLLIIVGDNPDGLLVDSMT-GKTIASLC----G 316 (446)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~-------~~~l~~~~~d~~i~i~d~~~-~~~~~~~~----~ 316 (446)
+|........|+-.|+++|+.+..+.....+.-..+.|+ ....++|-.+..+..||.|- +..+..-. .
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 344445668899999999999999984333333444453 33456777888999999984 32222111 1
Q ss_pred CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEc
Q 013282 317 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 390 (446)
Q Consensus 317 ~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~ 390 (446)
......|++-+.+| +||+|+.+|.||+||- .+.+....+++-..+|..|..+.||++|++.+ +..|.++++
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 33456777777776 6999999999999995 43455566777778999999999999998666 555777775
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=0.00012 Score=76.18 Aligned_cols=205 Identities=14% Similarity=0.170 Sum_probs=132.5
Q ss_pred CceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEEC----CCC
Q 013282 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS----MTG 308 (446)
Q Consensus 233 ~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~----~~~ 308 (446)
..|.++.+ ..+.. .++.+...|.|.+-|.++......-.-...|.+++||||+..++..+..+++.+.+- -..
T Consensus 69 ~~i~s~~f--l~d~~-~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQF--LADTN-SICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEE--ecccc-eEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 35556665 44544 466677889999999888776555556778999999999999999988888866542 111
Q ss_pred ceE-------------------EEecCCC---------------------CceeEEEECCCCCEEEEEe-----CCCcEE
Q 013282 309 KTI-------------------ASLCGHL---------------------DFSFASAWHPNGVTFATGN-----QDKTCR 343 (446)
Q Consensus 309 ~~~-------------------~~~~~~~---------------------~~v~~~~~~p~~~~l~sgs-----~d~~v~ 343 (446)
+++ ..|.|.. +.=++++|--||.++|+.. ..+.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 111 1122111 1123589999999999843 237899
Q ss_pred EEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEe---CCCeEEEEEcCCCeeEeE----eeccccCeEEEEEcCCCC
Q 013282 344 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE---PADFVHVYDVKSGYEKEQ----EIDFFGEISGISFSPDTE 416 (446)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~---~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~spdg~ 416 (446)
+||.. +..-.+-....+--.+++|-|.|..+|+-. .++.|.+|. ++|-.... ...-..++..++|+.++.
T Consensus 226 V~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 226 VYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred Eeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCC
Confidence 99984 332222222333445899999999888754 456799998 44532222 222234589999999999
Q ss_pred cEEEEEecCCcceEEEEecccCceecc
Q 013282 417 SLFIGVWDRTYGSLLEYGRCRNYSYLD 443 (446)
Q Consensus 417 ~l~~~~~D~~~~~~l~~~~~~~~~~l~ 443 (446)
.|++-..+..-..+..+..+....||-
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWYLK 329 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWYLK 329 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEEEE
Confidence 999866665555454455554455554
No 327
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.26 E-value=3e-05 Score=75.11 Aligned_cols=161 Identities=21% Similarity=0.213 Sum_probs=103.6
Q ss_pred EEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEe---cC-CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEE
Q 013282 259 VRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVG---DN-PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTF 333 (446)
Q Consensus 259 v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~---~d-~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 333 (446)
+.+-|-. +.....+. ....+..-+|+|++..++... .. ..++++++.+++....+. ..+.-...+|+|+|+.|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 3344443 33333333 456677889999999876653 22 469999999887655544 33444557899999888
Q ss_pred EEEe-CCCc--EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCC-C--eEEEEEcCCCeeEeEeeccccCeE
Q 013282 334 ATGN-QDKT--CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA-D--FVHVYDVKSGYEKEQEIDFFGEIS 407 (446)
Q Consensus 334 ~sgs-~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~ 407 (446)
+... .||. |.+.|+.. +.+..+....+.-+.-.|+|||++|+..+.. | .|.++++..+.. .++....+.-.
T Consensus 253 ~f~~~rdg~~~iy~~dl~~--~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDG--KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred EEEECCCCCccEEEEcCCC--CcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 7665 4665 55556643 3344455444444477899999998877643 3 477778776654 33333333333
Q ss_pred EEEEcCCCCcEEEEEec
Q 013282 408 GISFSPDTESLFIGVWD 424 (446)
Q Consensus 408 ~~~~spdg~~l~~~~~D 424 (446)
...|+|||++|+..+..
T Consensus 330 ~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 330 NPVWSPDGDKIVFESSS 346 (425)
T ss_pred CccCCCCCCEEEEEecc
Confidence 78899999999988743
No 328
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=0.0014 Score=60.70 Aligned_cols=213 Identities=17% Similarity=0.147 Sum_probs=131.4
Q ss_pred EEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee------
Q 013282 201 LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR------ 274 (446)
Q Consensus 201 ~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~------ 274 (446)
++.+--..+.|.-|+..+.... .+...........+ ...+ .|+++. ..+++++.+++..+..+.
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~----~~~~p~~~~~~~~~--d~~g--~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKR----VFPSPGGFSSGALI--DAGG--RLIACE--HGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceE----EEECCCCcccceee--cCCC--eEEEEc--cccEEEeccCCceeEEeccccCCC
Confidence 4555556677777777644322 22222222223333 4444 355543 346677766555533322
Q ss_pred CCCCeeEEEECCCCCEEEEEec-----------CCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC-CCcE
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGD-----------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ-DKTC 342 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d~~v 342 (446)
.....+.+.+.|+|.+-++... .|.|+.+|. .+..++.+..+-..-+.++|||+++.|+.+-. .+.|
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 2345778889999986665433 233555554 57777777776677789999999988777654 4778
Q ss_pred EEEEccC-C----Cc-ceEEEecCCCceEEEEEccCCCEEEEEeCCC-eEEEEEcCCCeeEeEeeccccCeEEEEEc-CC
Q 013282 343 RIWDLRN-L----SE-SVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-FVHVYDVKSGYEKEQEIDFFGEISGISFS-PD 414 (446)
Q Consensus 343 ~iwd~~~-~----~~-~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-pd 414 (446)
.-|++.. . .+ ....+....+..-.++...+|.+.+++..+| .|.+|+.. |+.+..+.-....+++++|- |+
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~ 266 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPD 266 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCC
Confidence 8887741 1 11 1122223345566778888888776555554 89999988 88888877666778888885 56
Q ss_pred CCcEEEEEecC
Q 013282 415 TESLFIGVWDR 425 (446)
Q Consensus 415 g~~l~~~~~D~ 425 (446)
.+.|++.+...
T Consensus 267 ~~~L~iTs~~~ 277 (307)
T COG3386 267 LNTLYITSARS 277 (307)
T ss_pred cCEEEEEecCC
Confidence 67777766544
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.25 E-value=0.00056 Score=67.90 Aligned_cols=144 Identities=14% Similarity=-0.049 Sum_probs=90.4
Q ss_pred ECCCCCEEEE-EecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEe-------------------------
Q 013282 284 QSPDGKLLII-VGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN------------------------- 337 (446)
Q Consensus 284 ~sp~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs------------------------- 337 (446)
++|||+.+.. .-..+.+.++|..+.+...++.-- +...-++++|+|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 4456665532 223466778888877776665432 2335567888888877665
Q ss_pred ---------------CCCcEEEEEccC----CCcceEEEecCCCceEEEEEccCCCEEEEEe-CCCeEEEEEcCCCee--
Q 013282 338 ---------------QDKTCRIWDLRN----LSESVAVLKGNLGAIRSIRYTSDGRYMATAE-PADFVHVYDVKSGYE-- 395 (446)
Q Consensus 338 ---------------~d~~v~iwd~~~----~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg~i~iwd~~~~~~-- 395 (446)
.+++|.+.|.++ ....+..+.. ......+.++|||+++++++ .+..|.|+|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 124577777754 1234444443 34567899999999887666 488999999987542
Q ss_pred ----------EeEeeccccCeEEEEEcCCCCcEEEEEecCCcceE
Q 013282 396 ----------KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSL 430 (446)
Q Consensus 396 ----------~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~ 430 (446)
..+.. ........+|.++|....+-.-|..+-+|
T Consensus 358 ~~~~~~~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 358 DGKIKPRDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred hccCCccceEEEeec-cCCCcceEEECCCCCEEEeEeecceeEEE
Confidence 22222 23345567899998866555556555444
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.23 E-value=0.0012 Score=58.99 Aligned_cols=191 Identities=10% Similarity=0.102 Sum_probs=111.7
Q ss_pred eecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeC--CCCeeEEEECCCCCEEEEEecCCcEEEEEC
Q 013282 228 TYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF--PWPVNHSSQSPDGKLLIIVGDNPDGLLVDS 305 (446)
Q Consensus 228 ~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 305 (446)
+.+-...++.+++ .|+.+.++++....+.|..++. +|+.++.+.. ..-...+++..++.++++.-.++.+.++++
T Consensus 17 l~g~~~e~SGLTy--~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 17 LPGILDELSGLTY--NPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp -TT--S-EEEEEE--ETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CCCccCCccccEE--cCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3344445788877 8987778888888999998997 5788888773 345788888877766666556889999988
Q ss_pred CCC--c----eEEEec-----CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccC--CCcceEEE--------ecCCCce
Q 013282 306 MTG--K----TIASLC-----GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN--LSESVAVL--------KGNLGAI 364 (446)
Q Consensus 306 ~~~--~----~~~~~~-----~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~--~~~~~~~~--------~~~~~~v 364 (446)
... . .+..+. .+...+-.++|.|.++.|+.+-...-.+||.++. ....+... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 421 1 112222 2445689999999877777777776777777753 11111111 1133467
Q ss_pred EEEEEccCC-CEEEEEeCCCeEEEEEcCCCeeEeEeeccc---------cCeEEEEEcCCCCcEEEEEe
Q 013282 365 RSIRYTSDG-RYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 365 ~~l~~s~dg-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~spdg~~l~~~~~ 423 (446)
.+++++|.. .+++.+.....|.++| .+|+.+..+.-.. ...-+|+|.++|. |++.+.
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE 240 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE 240 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC
Confidence 899999965 4556666778899999 5666554433211 2578999999985 555543
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.22 E-value=0.00076 Score=70.41 Aligned_cols=195 Identities=12% Similarity=0.093 Sum_probs=124.7
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec----
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM---- 264 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~---- 264 (446)
.|.++.+ +++-++.+...|.|.+-+..+.... ....-...|.++.| +|++. .++..+..+++.+..-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aasw--S~Dee-~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASW--SPDEE-LLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEee--cCCCc-EEEEEeCCcEEEEEeccccc
Confidence 6888888 8889999999999999877665322 22223334556655 99998 4666666677665421
Q ss_pred Ccceee-------------------Eeee----------------------CCCCeeEEEECCCCCEEEEEe-----cCC
Q 013282 265 GKYQLS-------------------KHFR----------------------FPWPVNHSSQSPDGKLLIIVG-----DNP 298 (446)
Q Consensus 265 ~~~~~~-------------------~~~~----------------------~~~~v~~~~~sp~~~~l~~~~-----~d~ 298 (446)
-.-+.+ ..|. ....=..+.|.-||.++++.. ...
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111110 1111 001123488999999998842 337
Q ss_pred cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeC---CCcEEEEEccCC--CcceEEEecCCCceEEEEEccCC
Q 013282 299 DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNL--SESVAVLKGNLGAIRSIRYTSDG 373 (446)
Q Consensus 299 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~---d~~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~s~dg 373 (446)
.|++||.. |.+-..-....+--.+++|-|.|.++++-.. |+.|.++.-.-. +.....+......|..++|+.++
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 89999976 5443333333444568999999999988643 557888886211 11112233334458999999999
Q ss_pred CEEEE---EeCCCeEEEEEcCCC
Q 013282 374 RYMAT---AEPADFVHVYDVKSG 393 (446)
Q Consensus 374 ~~l~~---~~~dg~i~iwd~~~~ 393 (446)
..||+ ......|++|-+.+-
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CceeeeecccccceEEEEEecCe
Confidence 99987 445556999987763
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=9.8e-05 Score=74.02 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=116.7
Q ss_pred CCCCCeEEEEEeCCCcEEEEecCcceeeEeee-CCCC-eeEEEECCCCCEEEEEecCC-----cEEEEECCC------Cc
Q 013282 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR-FPWP-VNHSSQSPDGKLLIIVGDNP-----DGLLVDSMT------GK 309 (446)
Q Consensus 243 s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~-v~~~~~sp~~~~l~~~~~d~-----~i~i~d~~~------~~ 309 (446)
++++. .++.|+.+|.|.+.+- +.+.++.++ ++.. |..+-...+.++|++.+.|+ .++||++.. .+
T Consensus 32 ~s~~~-~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 32 SSSTG-SVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred cCCCc-eEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 66666 6999999999888773 344445555 4444 55554444446777766554 489999862 23
Q ss_pred eE--EEecC-----CCCceeEEEECCCCCEEEEEeCCCcEEEEEc---cCCCcceEEEecCCCceEEEEEccCCCEEEEE
Q 013282 310 TI--ASLCG-----HLDFSFASAWHPNGVTFATGNQDKTCRIWDL---RNLSESVAVLKGNLGAIRSIRYTSDGRYMATA 379 (446)
Q Consensus 310 ~~--~~~~~-----~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~---~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 379 (446)
++ +.+.+ .+.++.+++.+.+-+.+|.|-.+|.|..+.= |..+...........+|+.+++..+++.++.+
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 34 12222 3457888999999999999999999998853 22222222223346799999999999874434
Q ss_pred eCCCeEEEEEcCCCeeEeE-eeccccCeEEEEEcCCCCcEEEE
Q 013282 380 EPADFVHVYDVKSGYEKEQ-EIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 380 ~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
..-..|.+|.+....+... +..|...++|..|++...-+++|
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 4455699999884432333 55567789999999866534444
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.19 E-value=0.00055 Score=65.78 Aligned_cols=225 Identities=13% Similarity=0.062 Sum_probs=126.5
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCee---------------------------------------e-EEEEe
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVS---------------------------------------F-CSRTT 228 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~---------------------------------------~-~~~~~ 228 (446)
.|+.+++ ...-|+.|...|.|.||.+..++.. + .....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4666666 6678889999999999876433211 0 01122
Q ss_pred ecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee---------CCCCeeEEEECC-----CC---CEE
Q 013282 229 YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---------FPWPVNHSSQSP-----DG---KLL 291 (446)
Q Consensus 229 ~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~v~~~~~sp-----~~---~~l 291 (446)
....+.|++++. |.-| +++.|+.+|.+.|.|++....+..-. ....++++.|+. |+ -.+
T Consensus 83 ~~~~g~vtal~~--S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKN--SDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE---BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEec--CCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 233577888887 6555 89999999999999998887776533 123577777752 33 378
Q ss_pred EEEecCCcEEEEECC--C-CceE----EEecCCCCceeEEE-ECCC-C--------------------CEEEEEeCCCcE
Q 013282 292 IIVGDNPDGLLVDSM--T-GKTI----ASLCGHLDFSFASA-WHPN-G--------------------VTFATGNQDKTC 342 (446)
Q Consensus 292 ~~~~~d~~i~i~d~~--~-~~~~----~~~~~~~~~v~~~~-~~p~-~--------------------~~l~sgs~d~~v 342 (446)
++|+..|.+.+|.+. . +.-. .....+.++|..+. ++.+ | .+++++ .+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccce
Confidence 899999999999875 1 2211 12223556665554 3221 1 133443 46679
Q ss_pred EEEEccCCCcceEEEecCCCceEEEEEc-----cCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccc----cCeEEEEEcC
Q 013282 343 RIWDLRNLSESVAVLKGNLGAIRSIRYT-----SDGRYMATAEPADFVHVYDVKSGYEKEQEIDFF----GEISGISFSP 413 (446)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~v~~l~~s-----~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~sp 413 (446)
|++...+ .+..+......-....+.+- ..+..|++-..+|.|++|.+...+.+....-.. ..+....|++
T Consensus 238 rv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 238 RVFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEEeCCC-CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 9999865 34333333222233344452 356788888999999999999988776665432 2355677889
Q ss_pred CCCcEEEE
Q 013282 414 DTESLFIG 421 (446)
Q Consensus 414 dg~~l~~~ 421 (446)
+|+.++-.
T Consensus 317 ~Gdi~~~~ 324 (395)
T PF08596_consen 317 NGDIFYWT 324 (395)
T ss_dssp TS-EEEE-
T ss_pred CCCEEEEe
Confidence 99876544
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.00055 Score=67.47 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=82.4
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee-
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL- 269 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~- 269 (446)
..+|++..+.+|+.|+.-|.+++|+-..+... .....+..+++..+.+ +++.. ++++|+..|.|.++-+....+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--~~~~~~~~~~~~~~~v--s~~e~-lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--KLKNEGATGITCVRSV--SSVEY-LVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhh--cccccCccceEEEEEe--cchhH-hhhhhcCCceEEeehhhccCCC
Confidence 56777779999999999999999987555322 1222223444555555 77665 788888999999998765332
Q ss_pred ----eEeee--CCCCeeEEEECCCCCEEEEEecCCcEEEEECCC
Q 013282 270 ----SKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT 307 (446)
Q Consensus 270 ----~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 307 (446)
+.... |+..|++++|++++..+.+|...|+|.+..+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11111 678899999999999999999999998877765
No 335
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=1.3e-06 Score=87.05 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=121.2
Q ss_pred ceeeEeee-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCC--cEE
Q 013282 267 YQLSKHFR-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDK--TCR 343 (446)
Q Consensus 267 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~--~v~ 343 (446)
++..+.|. +....+|++|+-..++|++|+-.|.|+++++.+|.......+|..+|+-+.-+-+|..+++.+.-. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44445555 677899999999999999999999999999999999999999999999998888998887766533 578
Q ss_pred EEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec----cccCeEEEEEcCCCCcEE
Q 013282 344 IWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTESLF 419 (446)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~spdg~~l~ 419 (446)
+|++.....+.+.+.. -.++.|+...++-+.|+......+||++++..+.++.. ....-+...|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9999776777777765 34788988766666677777899999999876665332 122336778999877665
Q ss_pred E--EEecCCcc
Q 013282 420 I--GVWDRTYG 428 (446)
Q Consensus 420 ~--~~~D~~~~ 428 (446)
- .-||.++.
T Consensus 1247 ndGvLWDvR~~ 1257 (1516)
T KOG1832|consen 1247 NDGVLWDVRIP 1257 (1516)
T ss_pred eCceeeeeccH
Confidence 2 23554443
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.17 E-value=0.0027 Score=63.46 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=94.9
Q ss_pred cEEEEecCcceeeEeeeCCC-Ce------eEEEEC----CCCC---EEEEEecCCcEEEEECCCCceEEEecCCCCceeE
Q 013282 258 GVRDFDMGKYQLSKHFRFPW-PV------NHSSQS----PDGK---LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 323 (446)
Q Consensus 258 ~v~iwd~~~~~~~~~~~~~~-~v------~~~~~s----p~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 323 (446)
.|..+|+.+++.+..++... .. ....+. -++. .+++++.+|.++.+|.++|+.+...... ...
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~ 333 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQP 333 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccc
Confidence 79999999999998876221 11 111111 1333 5777888999999999999988765421 112
Q ss_pred EEECCCCCEEEEE------------------eCCCcEEEEEccCCCcceEEEecCC--------Cce--EEEEEccCCCE
Q 013282 324 SAWHPNGVTFATG------------------NQDKTCRIWDLRNLSESVAVLKGNL--------GAI--RSIRYTSDGRY 375 (446)
Q Consensus 324 ~~~~p~~~~l~sg------------------s~d~~v~iwd~~~~~~~~~~~~~~~--------~~v--~~l~~s~dg~~ 375 (446)
++.+| ..++.+ ..+|.+.-.|+.+ ++.+-...... .+. ..+. ..+..
T Consensus 334 ~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t-G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~ 408 (488)
T cd00216 334 MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT-GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNL 408 (488)
T ss_pred cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC-CcEeeEeeCCccccccccCCcccCcceE--ecCCe
Confidence 33344 222222 2356777778755 55554443220 111 1122 24568
Q ss_pred EEEEeCCCeEEEEEcCCCeeEeEeeccccCe-EE-EEEcCCCCcEEEEEecCC
Q 013282 376 MATAEPADFVHVYDVKSGYEKEQEIDFFGEI-SG-ISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 376 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~-~~~spdg~~l~~~~~D~~ 426 (446)
|++++.+|.|+.+|..+|+.+-+..- .+.+ .. +.|..+| .++++..++.
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g-~~yv~~~~g~ 459 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNG-KQYVGVMVGG 459 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCC-EEEEEEEecC
Confidence 88899999999999999988877653 3333 22 2244454 5666666664
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.14 E-value=5.3e-07 Score=86.88 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=121.1
Q ss_pred eeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee-Eee--eCCCCeeEEEECC-CCCEEEEEe----cCCcEEEEECC
Q 013282 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS-KHF--RFPWPVNHSSQSP-DGKLLIIVG----DNPDGLLVDSM 306 (446)
Q Consensus 235 v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~--~~~~~v~~~~~sp-~~~~l~~~~----~d~~i~i~d~~ 306 (446)
+.+++.+...+ ..++++|..+|.|.+-.+....-. ..+ .+..++++++|++ |.+.||+|- .+..+.|||+.
T Consensus 59 ~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 59 VKCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred ceeehhhcCCc-hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 34444433333 347888999999998877543322 222 2677899999998 677788774 36789999998
Q ss_pred CC--ce--EEEecC-CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEcc-CCCEEEEEe
Q 013282 307 TG--KT--IASLCG-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTS-DGRYMATAE 380 (446)
Q Consensus 307 ~~--~~--~~~~~~-~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~~ 380 (446)
++ .+ ...|.+ -.....+++|-.+.+++++|.....++++|+|... .....-....+..+..+| .+.++++-.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCceeccc
Confidence 76 22 222332 33455688999899999999999999999998422 222222344677788888 667777655
Q ss_pred CCCeEEEEE-cCCCeeEeEeeccc-----cCeEEEEEcCCCC-cEEEEEec
Q 013282 381 PADFVHVYD-VKSGYEKEQEIDFF-----GEISGISFSPDTE-SLFIGVWD 424 (446)
Q Consensus 381 ~dg~i~iwd-~~~~~~~~~~~~~~-----~~v~~~~~spdg~-~l~~~~~D 424 (446)
+|.|.+|| .++-+...+...|. ..+..++|+|... .|++.+-|
T Consensus 216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd 265 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD 265 (783)
T ss_pred -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence 99999999 44333222222222 2488999999543 34444433
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.12 E-value=0.0012 Score=64.38 Aligned_cols=208 Identities=13% Similarity=0.113 Sum_probs=111.4
Q ss_pred EEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEe
Q 013282 193 STLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH 272 (446)
Q Consensus 193 ~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 272 (446)
.+..++|++++. +.+|...|+....... +.. -.++.+.|.+.+. +++-....+|.|+.--..+....
T Consensus 38 ls~npngr~v~V-~g~geY~iyt~~~~r~----k~~------G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 38 LSHNPNGRFVLV-CGDGEYEIYTALAWRN----KAF------GSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp EEE-TTSSEEEE-EETTEEEEEETTTTEE----EEE------EE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-TT--
T ss_pred EEECCCCCEEEE-EcCCEEEEEEccCCcc----ccc------CceeEEEEecCcc--EEEEECCCeEEEEEcCccccceE
Confidence 344448888888 5577788877332211 111 2345566677553 66666688999974333333345
Q ss_pred eeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCc
Q 013282 273 FRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 352 (446)
Q Consensus 273 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~ 352 (446)
+..+..+..+-. |.+|+..+.+ .|.+||..+++.++.+... +|..+.|+++|.++|..+.+ ++.|++... .
T Consensus 105 i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~--~ 175 (443)
T PF04053_consen 105 IKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL--E 175 (443)
T ss_dssp ---SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H--H
T ss_pred EcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc--h
Confidence 554444555543 7877777655 8999999999999999743 48999999999999999866 688887632 2
Q ss_pred ------------ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEE
Q 013282 353 ------------SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFI 420 (446)
Q Consensus 353 ------------~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 420 (446)
....+..-...|.+.+|..+ .++-.+.. .|+. +..|. ...+.....++.=+...|..+.|+.
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTTEEEE
T ss_pred hcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCCEEEE
Confidence 44444443567889999876 44444444 5665 44453 2233333445555667776666666
Q ss_pred EEecCCcc
Q 013282 421 GVWDRTYG 428 (446)
Q Consensus 421 ~~~D~~~~ 428 (446)
.--|+++.
T Consensus 250 ~Dr~~~v~ 257 (443)
T PF04053_consen 250 IDRDGNVI 257 (443)
T ss_dssp E-TT--EE
T ss_pred EECCCCEE
Confidence 65555443
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.8e-05 Score=72.43 Aligned_cols=158 Identities=14% Similarity=0.177 Sum_probs=104.3
Q ss_pred EEEEecCcceeeEeee-CCCCeeEEEECCCCC-EEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCC-CCEEEE
Q 013282 259 VRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGK-LLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN-GVTFAT 335 (446)
Q Consensus 259 v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~s 335 (446)
|++++..+.+....+. +...|..++|||..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-+ .++++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6666666655555444 667899999999776 7888999999999999999888888877 77899999884 467888
Q ss_pred EeCCCcEEEEEccCCCcceEEEec--CCCceEEEEE------ccCCCEEEEEeCCCeEEEEEcCCCe--eEe-Eeecccc
Q 013282 336 GNQDKTCRIWDLRNLSESVAVLKG--NLGAIRSIRY------TSDGRYMATAEPADFVHVYDVKSGY--EKE-QEIDFFG 404 (446)
Q Consensus 336 gs~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~------s~dg~~l~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~ 404 (446)
|-.+|.|.|||+|.+..++..+.+ ...+|..++. .+.|.+|+.+..+ +..|++.-.. ... ......+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 888999999999987766665554 1234444432 3344455444332 5566654221 111 1122344
Q ss_pred CeEEEEEcCCCCcEE
Q 013282 405 EISGISFSPDTESLF 419 (446)
Q Consensus 405 ~v~~~~~spdg~~l~ 419 (446)
...++...+-.+.++
T Consensus 332 ~cismqy~~~snh~l 346 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLL 346 (463)
T ss_pred ceeeeeecCccceEE
Confidence 555556655444433
No 340
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.09 E-value=0.00055 Score=59.56 Aligned_cols=145 Identities=13% Similarity=-0.008 Sum_probs=103.1
Q ss_pred CCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeE
Q 013282 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA 323 (446)
Q Consensus 244 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 323 (446)
++.+.+++.|+..+.+...|..+|+.+...-....+.+-+.- -|++++.|...|.+++.+.++|.....+..-..--..
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 555678999999999999999999998877666666655443 4778999999999999999999887777643221122
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEc
Q 013282 324 SAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 390 (446)
Q Consensus 324 ~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~ 390 (446)
....+++..+..|+.|++.+..|.+. ..++...+...+...+-+..|-...|..+...|.|.--..
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence 34567899999999999999999976 6667666654443444555662233444455554444333
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.04 E-value=0.01 Score=54.72 Aligned_cols=268 Identities=18% Similarity=0.146 Sum_probs=151.8
Q ss_pred ceeeeeeccccccceeeccceeeeEEecccCeEEEec-----------CCeEEEEecCCCCceEEEecCCC-CCCCCCCC
Q 013282 113 SYYEFRRNSRSVKSTILHFQLRNLVWATSKHDVYLMS-----------HFSVIHWSSLTSSRSQVLNVSGH-VAPSEKHP 180 (446)
Q Consensus 113 ~~~~f~~~~~~v~~~~~h~~~~~l~~~~~~~~v~~~~-----------~~~i~~w~~~~~~~~~~~~~~g~-~~~~~~~~ 180 (446)
+.|-+.....++...+--..+.+++.+.....+|.+. ..-|.+||..+-....=+.+.+. -...
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~---- 93 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV---- 93 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B----
T ss_pred eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee----
Confidence 4566666666666666555566666676666666532 22377899877755433333321 1110
Q ss_pred CCccccCccceEEEEEeCCcEEEEecc--CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCc
Q 013282 181 GSLLEGFTQTQVSTLAVKDKLLVAGGF--QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG 258 (446)
Q Consensus 181 g~~~~~~~~~~v~~l~~~~~~l~tg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~ 258 (446)
........++.++++++..-. .-+|.|-|+...+...... ...|..++ |.++.-|.+-+.||+
T Consensus 94 ------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-------~PGC~~iy--P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 94 ------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-------TPGCWLIY--PSGNRGFSMLCGDGS 158 (342)
T ss_dssp ------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-------GTSEEEEE--EEETTEEEEEETTSC
T ss_pred ------cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-------CCCEEEEE--ecCCCceEEEecCCc
Confidence 011135566667877776533 4567777887665432111 11233343 333335778889999
Q ss_pred EEEEecC-cceeeEeee---C--CCC-eeEEEECCCCCEEEEEecCCcEEEEECCCCceE--EEecC----------CCC
Q 013282 259 VRDFDMG-KYQLSKHFR---F--PWP-VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI--ASLCG----------HLD 319 (446)
Q Consensus 259 v~iwd~~-~~~~~~~~~---~--~~~-v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~----------~~~ 319 (446)
+.-..+. .|+...... + ..+ +..-++...+..++..+.+|.|+-.|+...... ..+.- -.+
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 9998886 555543322 1 122 223344455666777888999999998755422 22211 123
Q ss_pred ceeEEEECCCCCEEEEEeC--------CC--cEEEEEccCCCcceEEEecCCCceEEEEEccCCC-EEEEEe-CCCeEEE
Q 013282 320 FSFASAWHPNGVTFATGNQ--------DK--TCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR-YMATAE-PADFVHV 387 (446)
Q Consensus 320 ~v~~~~~~p~~~~l~sgs~--------d~--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~~~~-~dg~i~i 387 (446)
...-+++++..+.|++--. |+ .|-++|+.+ ++.+..+.. ..++.+|+.+.+.+ +|++.+ .++.|.+
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 3455788875555554321 22 366778855 777887774 34688999999876 665544 5789999
Q ss_pred EEcCCCeeEeEeec
Q 013282 388 YDVKSGYEKEQEID 401 (446)
Q Consensus 388 wd~~~~~~~~~~~~ 401 (446)
||..+|+.+..+..
T Consensus 317 ~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 317 YDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTT--EEEEE--
T ss_pred EeCcCCcEEeehhc
Confidence 99999988877664
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=0.0074 Score=52.74 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=73.4
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCccee
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQL 269 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~ 269 (446)
+|-+-+. -|++++.|+..|.+++.+..++.......+...- .+.+. . .+++. ++..|+.|++.+..|..+..+
T Consensus 54 RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v--k~~a~-~--d~~~g-lIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 54 RIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV--KVRAQ-C--DFDGG-LIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred eeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhh--ccceE-E--cCCCc-eEEEecCCCcEEEecccccce
Confidence 3444443 6788999999999999999888654433332221 11221 2 56776 799999999999999999999
Q ss_pred eEeeeCCCCe-eEEEECCCCCEEEEEecCCcEEEEECCCC
Q 013282 270 SKHFRFPWPV-NHSSQSPDGKLLIIVGDNPDGLLVDSMTG 308 (446)
Q Consensus 270 ~~~~~~~~~v-~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 308 (446)
+...+-++.+ .+-++.|-...|.++...|.+.-....++
T Consensus 128 VykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 128 VYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 8887744433 34455663334555555566655555444
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.03 E-value=0.0072 Score=57.80 Aligned_cols=229 Identities=17% Similarity=0.139 Sum_probs=122.5
Q ss_pred EEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCcee--------------eEEEEeCCCCCeEEEEEeCCC
Q 013282 192 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITN--------------AVEIYGSPSGAVHFTASNNDC 257 (446)
Q Consensus 192 v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~--------------~i~~~~s~~~~~~l~s~s~dg 257 (446)
-..++++|+.+|... ++.|.++++..+... ..+..+...+.+ .-.+.|||+++.+++.--++.
T Consensus 47 ~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~--~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 47 DAKWSPDGKYIAFVR-DNNLYLRDLATGQET--QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp EEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred cceeecCCCeeEEEe-cCceEEEECCCCCeE--EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence 445566888888876 567888887665222 122222111111 123556999997666666666
Q ss_pred cEEEEecCc----ce---eeEeee----------------------------------CCCCeeEEEECCCCCEEEEE--
Q 013282 258 GVRDFDMGK----YQ---LSKHFR----------------------------------FPWPVNHSSQSPDGKLLIIV-- 294 (446)
Q Consensus 258 ~v~iwd~~~----~~---~~~~~~----------------------------------~~~~v~~~~~sp~~~~l~~~-- 294 (446)
.|+.+.+.. .. ....+. ...-+..+.|.++++.|++.
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 665554321 00 111111 11125567788888744333
Q ss_pred ec---CCcEEEEECCCCceEEEecC-CCCce---eEEEEC-CCCC-EEEEEeCCCcEEEEEccCCCcceEEEecCCCceE
Q 013282 295 GD---NPDGLLVDSMTGKTIASLCG-HLDFS---FASAWH-PNGV-TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 365 (446)
Q Consensus 295 ~~---d~~i~i~d~~~~~~~~~~~~-~~~~v---~~~~~~-p~~~-~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~ 365 (446)
.. ...+.++|..++.....+.. ..++| ....|. +++. ++.....+|--+||-+...+.....+....-.|.
T Consensus 204 nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~ 283 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVT 283 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EE
T ss_pred ccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeec
Confidence 22 23456778777655433322 22222 345554 6554 4555557887666666544555566665556674
Q ss_pred E-EEEccCCCEEE-EEeCC----CeEEEEEcC-CCeeEeEeeccccCeEEEEEcCCCCcEEEEEec
Q 013282 366 S-IRYTSDGRYMA-TAEPA----DFVHVYDVK-SGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 366 ~-l~~s~dg~~l~-~~~~d----g~i~iwd~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D 424 (446)
. +.|+++++.|+ +|..+ ..|+.-++. .+ .+..+....+.-..+.|||+|++++.....
T Consensus 284 ~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 284 SILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-EPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-EEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred ccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-CeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 4 77888887665 44442 256666777 44 444555444433699999999998876554
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=6.1e-05 Score=73.90 Aligned_cols=139 Identities=12% Similarity=0.147 Sum_probs=102.6
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEE-EecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA-SLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 353 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~ 353 (446)
++..|.-.+++..+++++.|+.-|.+++|+...++... ...+..+.+..+..+++..++|.|+..|.|.++-+.+...+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44556666677789999999999999999976665322 22234566777889999999999999999999998663222
Q ss_pred eEEE-----ecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC----eeEeEeeccccCeEEEEEcC
Q 013282 354 VAVL-----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG----YEKEQEIDFFGEISGISFSP 413 (446)
Q Consensus 354 ~~~~-----~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp 413 (446)
-..+ +.|...|++++|++++..+++|...|+|..-.+.+. ...+.+....+.|..+....
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 2222 236778999999999999999999999999888762 12333444567777776653
No 345
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00024 Score=67.75 Aligned_cols=145 Identities=16% Similarity=0.227 Sum_probs=106.6
Q ss_pred CCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCC-------EEEEEecCCcEEEEECCC-Cc-eEEEe
Q 013282 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGK-------LLIIVGDNPDGLLVDSMT-GK-TIASL 314 (446)
Q Consensus 244 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~~~~~d~~i~i~d~~~-~~-~~~~~ 314 (446)
.+.+.++.++..-..|+-.|+++|+.+........|+-+.+.|+.+ .-++|-.+..|.-||.+- ++ .+...
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3445566777777889999999999999999666688888888654 234566788999999983 33 33333
Q ss_pred cCCC----CceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEc
Q 013282 315 CGHL----DFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDV 390 (446)
Q Consensus 315 ~~~~----~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~ 390 (446)
++|. ....|.+-..+| ++++||.+|.||+||- ........+++-..+|..|..+.+|++|++.+ +..+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 3332 233455555555 7999999999999998 54666677888888999999999999988655 566667665
Q ss_pred C
Q 013282 391 K 391 (446)
Q Consensus 391 ~ 391 (446)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 3
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0019 Score=59.58 Aligned_cols=223 Identities=14% Similarity=0.067 Sum_probs=122.6
Q ss_pred cceEEEEEe---CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC
Q 013282 189 QTQVSTLAV---KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (446)
Q Consensus 189 ~~~v~~l~~---~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~ 265 (446)
+..|..|++ +..+|..++.+.+|+|.++.+.... .....+ ..+.+++| ..+...+|++|-..|.|.+||++
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---ssy~a~-~~~wSC~w--Dlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---SSYIAY-NQIWSCCW--DLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceee---eheecc-CCceeeee--ccCCcceeEEeccCceEEEEEcc
Confidence 346888888 4568999999999999999886433 222233 56788877 67777789999999999999997
Q ss_pred ccee-eEeee---CCCCeeEEE------ECCCCCEEEEEecCCcEEEEECC--CCceEEEec-CCCCceeEEEECCCCC-
Q 013282 266 KYQL-SKHFR---FPWPVNHSS------QSPDGKLLIIVGDNPDGLLVDSM--TGKTIASLC-GHLDFSFASAWHPNGV- 331 (446)
Q Consensus 266 ~~~~-~~~~~---~~~~v~~~~------~sp~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~-~~~~~v~~~~~~p~~~- 331 (446)
..+- +..+. ...+|..++ ..+.|.+|+....+ +..|.+. .+.....+. +..+.+.+++.++..+
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 6432 11111 122333322 33445555555443 4556554 222333232 2356677778877444
Q ss_pred EEEEEeCCCc---EE---E-EEccCCCcceEE-EecCCC-------ceEEEEEccCCCEEE-EEeCCCeEEEEEcCCCee
Q 013282 332 TFATGNQDKT---CR---I-WDLRNLSESVAV-LKGNLG-------AIRSIRYTSDGRYMA-TAEPADFVHVYDVKSGYE 395 (446)
Q Consensus 332 ~l~sgs~d~~---v~---i-wd~~~~~~~~~~-~~~~~~-------~v~~l~~s~dg~~l~-~~~~dg~i~iwd~~~~~~ 395 (446)
.|+|.-.+.+ ++ . -|-+. +.++.. -.++.+ .-..+.-.++..+|+ ++...+.+.+||+.++..
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred EEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 4444433211 11 1 01111 111111 111100 001122234555554 455567899999999877
Q ss_pred EeEeeccccCeEEEEEcC-C-CCcEEEE
Q 013282 396 KEQEIDFFGEISGISFSP-D-TESLFIG 421 (446)
Q Consensus 396 ~~~~~~~~~~v~~~~~sp-d-g~~l~~~ 421 (446)
++.+. ...+|..+.... + +.+|++-
T Consensus 424 vQ~l~-~~epv~Dicp~~~n~~syLa~L 450 (463)
T KOG1645|consen 424 VQTLA-LSEPVLDICPNDTNGSSYLALL 450 (463)
T ss_pred eeecc-cCcceeecceeecCCcchhhhe
Confidence 76654 446777765443 2 3355433
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.012 Score=56.75 Aligned_cols=211 Identities=16% Similarity=0.131 Sum_probs=139.3
Q ss_pred CCc-EEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEe--CCCcEEEEecCcceeeEeee
Q 013282 198 KDK-LLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 198 ~~~-~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~ 274 (446)
.+. ..++...++.|.+.+........ ....+. ....+.+ +++++.+.++-. .++++.+.|..+.+......
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~--~~~vG~--~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLG--SIPVGL--GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceee--Eeeecc--CCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 444 66666667889999966654332 121222 2344555 899986555555 47899999999999888865
Q ss_pred CCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCceEE-E----ecCCCCceeEEEECCCCCEEEEEeCC---CcEEEE
Q 013282 275 FPWPVNHSSQSPDGKLLIIVG-DNPDGLLVDSMTGKTIA-S----LCGHLDFSFASAWHPNGVTFATGNQD---KTCRIW 345 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~-~----~~~~~~~v~~~~~~p~~~~l~sgs~d---~~v~iw 345 (446)
-...-..++++|+|+.++++. .++.|.+.|..+..... . +.... .-..++++|+|..+...... +.+...
T Consensus 158 vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 158 VGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred cCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 332238999999999776655 78899999977665553 1 22222 33568999999977766554 589999
Q ss_pred EccCCCcceEE-EecCCCceEEEEEccCCCEEEEEeC-CCeEEEEEcCCCeeEeEeeccc---cCeEEEEEcCCCC
Q 013282 346 DLRNLSESVAV-LKGNLGAIRSIRYTSDGRYMATAEP-ADFVHVYDVKSGYEKEQEIDFF---GEISGISFSPDTE 416 (446)
Q Consensus 346 d~~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~spdg~ 416 (446)
|... +..... ..........+..+|+|.++.+... .+.+.+.|..+........... ..+..+++.+...
T Consensus 237 d~~~-~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 237 DTAT-GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD 311 (381)
T ss_pred eCCC-ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence 9865 443333 2222214567899999999888754 4889999988876555443322 2355666666433
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.92 E-value=0.014 Score=58.36 Aligned_cols=190 Identities=14% Similarity=0.116 Sum_probs=113.7
Q ss_pred cEEEEeccCCcEEEEEcCCCCeeeEEEEeecC--C-CceeeEEEEeCCCCCeEEEEEe---------CCCcEEEEecCcc
Q 013282 200 KLLVAGGFQGELICKHLDRPGVSFCSRTTYDD--N-AITNAVEIYGSPSGAVHFTASN---------NDCGVRDFDMGKY 267 (446)
Q Consensus 200 ~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~--~-~~v~~i~~~~s~~~~~~l~s~s---------~dg~v~iwd~~~~ 267 (446)
..++.++.+|.|+.+|..+++........... . .......+ . + . +++.++ .++.|..+|..++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~-~-~-~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--V-K-K-LVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--E-C-C-EEEEeccccccccCCCCcEEEEEECCCC
Confidence 78888999999999999888765433321110 0 01112222 1 1 2 344443 3688999999999
Q ss_pred eeeEeeeCCCC---------------------e-eEEEECCCCCEEEEEecCC------------------cEEEEECCC
Q 013282 268 QLSKHFRFPWP---------------------V-NHSSQSPDGKLLIIVGDNP------------------DGLLVDSMT 307 (446)
Q Consensus 268 ~~~~~~~~~~~---------------------v-~~~~~sp~~~~l~~~~~d~------------------~i~i~d~~~ 307 (446)
+.+..+....+ + ...++.+.+.++++++.++ .|.-+|+.+
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 99888763110 0 1234445567788887665 799999999
Q ss_pred CceEEEecC--CCC----ceeEEEEC----CCCC---EEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCC
Q 013282 308 GKTIASLCG--HLD----FSFASAWH----PNGV---TFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGR 374 (446)
Q Consensus 308 ~~~~~~~~~--~~~----~v~~~~~~----p~~~---~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 374 (446)
|+.+-.++. |.. ......+. -+|. .++.++.+|.+...|.++ ++.+-..... ...++.+| +
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t-G~~~W~~~~~---~~~~~~~~-~- 339 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT-GKLISARPEV---EQPMAYDP-G- 339 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC-CcEeeEeEee---ccccccCC-c-
Confidence 999887652 211 00111111 1333 678888899999999976 6666554321 11233444 2
Q ss_pred EEEEE------------------eCCCeEEEEEcCCCeeEeEee
Q 013282 375 YMATA------------------EPADFVHVYDVKSGYEKEQEI 400 (446)
Q Consensus 375 ~l~~~------------------~~dg~i~iwd~~~~~~~~~~~ 400 (446)
.++.+ ..+|.|.-.|+.+|+.+-+..
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 23222 236789899999987665544
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00016 Score=72.31 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=87.3
Q ss_pred eCCCCCeEEEEEe----CCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCC
Q 013282 242 GSPSGAVHFTASN----NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH 317 (446)
Q Consensus 242 ~s~~~~~~l~s~s----~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 317 (446)
|+|... +|++++ ..|+|.||- ++|++.+....+-.+.+++|+|..-.|+.|=..|.+.+|...+.+.-.....|
T Consensus 23 WHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th 100 (1416)
T KOG3617|consen 23 WHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETH 100 (1416)
T ss_pred cCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCC
Confidence 478776 566554 458888884 57777777777777889999998888899988999999998877665566679
Q ss_pred CCceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 013282 318 LDFSFASAWHPNGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 318 ~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~ 348 (446)
+.+|..+.|+|+|..++|+..-|.|.+|.+.
T Consensus 101 ~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 101 PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999999999999999999999999999874
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.88 E-value=0.0012 Score=63.05 Aligned_cols=163 Identities=22% Similarity=0.266 Sum_probs=94.9
Q ss_pred CCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEec-C-------C---------C
Q 013282 256 DCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-G-------H---------L 318 (446)
Q Consensus 256 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-------~---------~ 318 (446)
.+.+.++|+.+++..........+....|||+|+.++... ++.|+++++.+++..+.-. | - -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 4678999999987766655567899999999999998886 4689999988775443221 1 0 1
Q ss_pred CceeEEEECCCCCEEEEEeCC-CcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEe
Q 013282 319 DFSFASAWHPNGVTFATGNQD-KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE 397 (446)
Q Consensus 319 ~~v~~~~~~p~~~~l~sgs~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~ 397 (446)
+.-.++-|+|+|++||....| ..|+.+.+-.....-. .-..+..+.+-.-|.-.... .+.|+|+.+++...
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----~yp~~~~~~YPk~G~~np~v----~l~v~~~~~~~~~~ 172 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----QYPEVESIRYPKAGDPNPRV----SLFVVDLASGKTTE 172 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----SS-EEEEEE--BTTS---EE----EEEEEESSSTCCCE
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----cCCcccccccCCCCCcCCce----EEEEEECCCCcEEE
Confidence 223568899999999987654 3344443311000000 00134445543333222222 27788998876432
Q ss_pred -Eee----ccccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 398 -QEI----DFFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 398 -~~~----~~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
... .-...+..+.|+++++.|++...++.-
T Consensus 173 ~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q 207 (353)
T PF00930_consen 173 LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ 207 (353)
T ss_dssp E---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS
T ss_pred eeeccccCCCccCcccceecCCCcEEEEEEcccCC
Confidence 222 223468899999999866666555543
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.011 Score=54.73 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=100.3
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCe-eeEEEEeec-CCCceeeEEEEeCCCCCeEEEEEe-----C-----CCcEEEEecC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGV-SFCSRTTYD-DNAITNAVEIYGSPSGAVHFTASN-----N-----DCGVRDFDMG 265 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~-~~~~~~~~~-~~~~v~~i~~~~s~~~~~~l~s~s-----~-----dg~v~iwd~~ 265 (446)
.+..|+++. .| +.+++..+... ........+ .....+.+.+ .|+|...+-+-+ . -|.|+-++.
T Consensus 76 ~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v--~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p- 150 (307)
T COG3386 76 AGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVV--DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP- 150 (307)
T ss_pred CCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeE--cCCCCEEEeCCCccccCccccCCcceEEEEcC-
Confidence 344444443 33 45566654443 111111111 1233455666 788873333323 1 133444454
Q ss_pred cceeeEeee-CCCCeeEEEECCCCCEEEEEec-CCcEEEEECCC--C----ce-EEEecCCCCceeEEEECCCCCEEEEE
Q 013282 266 KYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD-NPDGLLVDSMT--G----KT-IASLCGHLDFSFASAWHPNGVTFATG 336 (446)
Q Consensus 266 ~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~--~----~~-~~~~~~~~~~v~~~~~~p~~~~l~sg 336 (446)
.+..++.+. +-..-+.++||||++.|..+.. .+.|+-|++.. + +. ...+....+..-.++...+|++.+++
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence 455544444 3455678999999988876654 57788887642 2 11 12222334555667778889888666
Q ss_pred eCCC-cEEEEEccCCCcceEEEecCCCceEEEEEc-cCCCEEEEEe
Q 013282 337 NQDK-TCRIWDLRNLSESVAVLKGNLGAIRSIRYT-SDGRYMATAE 380 (446)
Q Consensus 337 s~d~-~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~~~~ 380 (446)
...| .|.+|+.. ++.+..+......+++++|- |+.+.|++.+
T Consensus 231 ~~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 231 VWGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ccCCceEEEECCC--CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 6655 89999984 77788777765778888884 4445554443
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0001 Score=71.46 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=77.6
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCcee-EEEECCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF-ASAWHPNGVTFATGNQDKTCRIWDLRNLSES 353 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~ 353 (446)
.+..+.-+.|+|.-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|+|+.||.|-.||+|++.|+.++...
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 45568889999999999999999999999887 777888876666666 9999999999999999999999999774443
Q ss_pred eEEEecCCCceEEEEEcc
Q 013282 354 VAVLKGNLGAIRSIRYTS 371 (446)
Q Consensus 354 ~~~~~~~~~~v~~l~~s~ 371 (446)
......-..+|.++-|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 332233455788888864
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.82 E-value=0.03 Score=52.80 Aligned_cols=182 Identities=9% Similarity=0.099 Sum_probs=107.8
Q ss_pred CcEEEEecc---------C-CcEEEEEcCCC-C--eeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC
Q 013282 199 DKLLVAGGF---------Q-GELICKHLDRP-G--VSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG 265 (446)
Q Consensus 199 ~~~l~tg~~---------d-g~i~vw~~~~~-~--~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~ 265 (446)
..+|+.|+. . |.|.++++... . ............++|.++..+ +.. |+++ ..+.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~----~~~-lv~~-~g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF----NGR-LVVA-VGNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE----TTE-EEEE-ETTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh----CCE-EEEe-ecCEEEEEEcc
Confidence 477887754 2 99999999874 1 122222333457788888763 343 4444 34889999998
Q ss_pred cce-eeEeeeC--CCCeeEEEECCCCCEEEEEecCCcEEEEECCC-CceEEEec--CCCCceeEEEECCCCCEEEEEeCC
Q 013282 266 KYQ-LSKHFRF--PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLC--GHLDFSFASAWHPNGVTFATGNQD 339 (446)
Q Consensus 266 ~~~-~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~p~~~~l~sgs~d 339 (446)
..+ ....-.+ +..+.++.. .++++++|..-..+.++..+. ++.+..+. ....+++++.|-++++.++.+..+
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred CcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 777 4444333 334555544 467999998888888774432 33233333 234568889998777899999999
Q ss_pred CcEEEEEccCC------Cc-ceE-EEecC-CCceEEE---EEcc--CCC------EEEEEeCCCeEEEE
Q 013282 340 KTCRIWDLRNL------SE-SVA-VLKGN-LGAIRSI---RYTS--DGR------YMATAEPADFVHVY 388 (446)
Q Consensus 340 ~~v~iwd~~~~------~~-~~~-~~~~~-~~~v~~l---~~s~--dg~------~l~~~~~dg~i~iw 388 (446)
|.+.++..... +. .+. ...-| ...|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 99999987521 11 121 11222 3456666 5555 222 47788889988744
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.82 E-value=0.0023 Score=48.68 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=69.5
Q ss_pred eeEEEECC---CC-CEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013282 279 VNHSSQSP---DG-KLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 354 (446)
Q Consensus 279 v~~~~~sp---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~ 354 (446)
|+++++.. +| +.|++|++|..|++|+- ...+..+. ..+.|.+++-.+. ..|+.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~---~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR---SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC---ccee
Confidence 56666654 22 58999999999999974 45677776 4566777776655 67999999999999987 2334
Q ss_pred EEEecCCCceEEEEE-ccCC---CEEEEEeCCCeEE
Q 013282 355 AVLKGNLGAIRSIRY-TSDG---RYMATAEPADFVH 386 (446)
Q Consensus 355 ~~~~~~~~~v~~l~~-s~dg---~~l~~~~~dg~i~ 386 (446)
...+.... ++++++ ..+| +.|++|-.+|.|-
T Consensus 75 WRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44444333 455544 3333 4788998898774
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.78 E-value=0.036 Score=52.24 Aligned_cols=250 Identities=14% Similarity=0.109 Sum_probs=120.8
Q ss_pred CCeEEEEecCCCCceEEEecCCCCCCCCCCCCCccccCccceEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEee
Q 013282 150 HFSVIHWSSLTSSRSQVLNVSGHVAPSEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTY 229 (446)
Q Consensus 150 ~~~i~~w~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~ 229 (446)
..++.+.|+.+++..++....|.... -.+++.+.+.|+.-.....|+..++.+.+.. .+..
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~----------------g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~---~vy~ 119 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTF----------------GGFLSPDDRALYYVKNGRSLRRVDLDTLEER---VVYE 119 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TT----------------T-EE-TTSSEEEEEETTTEEEEEETTT--EE---EEEE
T ss_pred CcceEEEEcccCEEEECccCCCCCcc----------------ceEEecCCCeEEEEECCCeEEEEECCcCcEE---EEEE
Confidence 45677788888877666655432111 1244455666655444456777788776533 3333
Q ss_pred cCCCceeeEEEEeCCCCCeEEEEEe----------------------CCCcEEEEecCcceeeEeeeCCCCeeEEEECC-
Q 013282 230 DDNAITNAVEIYGSPSGAVHFTASN----------------------NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSP- 286 (446)
Q Consensus 230 ~~~~~v~~i~~~~s~~~~~~l~s~s----------------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp- 286 (446)
-....+....+.-+.++.. ++-.- -.+.|.-.|+.+|+....+.....+..+.|+|
T Consensus 120 ~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 4444554444433555553 22211 12345566888888888888778899999999
Q ss_pred CCCEEEEEec---CC-cEEEEECC-CCceEEEecCCC--CceeEEEECCCCCEEEEEeC-----CCcEEEEEccCCCcce
Q 013282 287 DGKLLIIVGD---NP-DGLLVDSM-TGKTIASLCGHL--DFSFASAWHPNGVTFATGNQ-----DKTCRIWDLRNLSESV 354 (446)
Q Consensus 287 ~~~~l~~~~~---d~-~i~i~d~~-~~~~~~~~~~~~--~~v~~~~~~p~~~~l~sgs~-----d~~v~iwd~~~~~~~~ 354 (446)
+..+|+.|-. +. .-+||-++ .|.....+..+. ..+..=-|.|+|..|.--+. +..|.-+|+.+ ....
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t-~~~~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT-GERR 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT---EE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC-CCce
Confidence 5556666643 22 12455443 344444444333 34555678999987765332 44577777765 3222
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEeCC----------------CeEEEEEcCCCeeEeEeeccc---------c--CeE
Q 013282 355 AVLKGNLGAIRSIRYTSDGRYMATAEPA----------------DFVHVYDVKSGYEKEQEIDFF---------G--EIS 407 (446)
Q Consensus 355 ~~~~~~~~~v~~l~~s~dg~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~---------~--~v~ 407 (446)
.... ..+...+-.++||++++-=+.| -.|+++++..+... .+..|. . .=-
T Consensus 278 ~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 278 RLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT--
T ss_pred EEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCC
Confidence 2221 2244566678899987643332 15778888876543 222221 1 124
Q ss_pred EEEEcCCCCcEEEEEe
Q 013282 408 GISFSPDTESLFIGVW 423 (446)
Q Consensus 408 ~~~~spdg~~l~~~~~ 423 (446)
.+.|+|||++++..+.
T Consensus 355 hp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSD 370 (386)
T ss_dssp --EE-TTSSEEEEEE-
T ss_pred CCccCCCCCEEEEECC
Confidence 5899999999776654
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.77 E-value=0.022 Score=55.44 Aligned_cols=189 Identities=11% Similarity=0.053 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee---CCCC-----eeE
Q 013282 210 ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR---FPWP-----VNH 281 (446)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~-----v~~ 281 (446)
.|.+|+.... ... .+.-.. +.+-.+. |+.+.. |++-..||.++++|+.... ...+. .... +..
T Consensus 62 ~I~iys~sG~-ll~--~i~w~~-~~iv~~~--wt~~e~--LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~ 132 (410)
T PF04841_consen 62 SIQIYSSSGK-LLS--SIPWDS-GRIVGMG--WTDDEE--LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFA 132 (410)
T ss_pred EEEEECCCCC-EeE--EEEECC-CCEEEEE--ECCCCe--EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccc
Confidence 4888887443 221 222222 4444444 477543 5666699999999986333 11111 1111 222
Q ss_pred EEECCCCCEEEEEecCCcEEEEECCCCc-eEEEec---C-------CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 013282 282 SSQSPDGKLLIIVGDNPDGLLVDSMTGK-TIASLC---G-------HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 350 (446)
Q Consensus 282 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~---~-------~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~ 350 (446)
..+..+| +++-+.++.+++..--... ..+.+. + +........++.+....+....++.+.+.+-..
T Consensus 133 ~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~- 209 (410)
T PF04841_consen 133 IWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS- 209 (410)
T ss_pred cccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc-
Confidence 2333344 3333445556555432221 111111 1 000000022334444555555555566444322
Q ss_pred CcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeecc-ccCeEEEEEcCC
Q 013282 351 SESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF-FGEISGISFSPD 414 (446)
Q Consensus 351 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~spd 414 (446)
... +. ..+++..++.||+|++||.-..+|.+.|....-.+....+... ...+..+.|.-+
T Consensus 210 ~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 210 FKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred ccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 111 22 2468999999999999999999999998875544333333322 345667777754
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.77 E-value=0.026 Score=55.31 Aligned_cols=193 Identities=14% Similarity=0.051 Sum_probs=108.9
Q ss_pred EeCCCCCeEEEEEeCCCc----EEEEecCcceeeEee-eCCCCeeEEEECCCCCEEEEEecCC-----------cEEEEE
Q 013282 241 YGSPSGAVHFTASNNDCG----VRDFDMGKYQLSKHF-RFPWPVNHSSQSPDGKLLIIVGDNP-----------DGLLVD 304 (446)
Q Consensus 241 ~~s~~~~~~l~s~s~dg~----v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-----------~i~i~d 304 (446)
.++|+|+.++++-+..|. |+++|+.+++.+... ... ....+.|.++++.|+....+. .|+.|.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 349999977776665554 999999999876533 222 123499999999887765332 378888
Q ss_pred CCCCce--EEEecCCCC-c-eeEEEECCCCCEEEEEeCC----CcEEEEEccCC---CcceEEEecCCCceEEEEEccCC
Q 013282 305 SMTGKT--IASLCGHLD-F-SFASAWHPNGVTFATGNQD----KTCRIWDLRNL---SESVAVLKGNLGAIRSIRYTSDG 373 (446)
Q Consensus 305 ~~~~~~--~~~~~~~~~-~-v~~~~~~p~~~~l~sgs~d----~~v~iwd~~~~---~~~~~~~~~~~~~v~~l~~s~dg 373 (446)
+.++.. ...+..... . ...+..++++++|+..+.. ..+.+.|+... ......+......+....-+..+
T Consensus 209 ~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~ 288 (414)
T PF02897_consen 209 LGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGD 288 (414)
T ss_dssp TTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETT
T ss_pred CCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCC
Confidence 876643 234443332 2 5678899999998765432 34777787652 23444444444444333323344
Q ss_pred CEEEEEe---CCCeEEEEEcCCCee---EeEeeccccCeEEEEEcCCCCcEEEEEecCCcceEEEEe
Q 013282 374 RYMATAE---PADFVHVYDVKSGYE---KEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYG 434 (446)
Q Consensus 374 ~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~~~~~l~~~ 434 (446)
.+++... .++.|...++.+... ...+..+...+.-..+...+.+|+....++....+..+.
T Consensus 289 ~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 289 RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 4444332 345677778877652 224555555333333444566777666555555444443
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.77 E-value=0.058 Score=54.40 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=85.7
Q ss_pred cEEEEecCcceeeEeeeC-CC---------CeeEEEECCCCC---EEEEEecCCcEEEEECCCCceEEEec--C------
Q 013282 258 GVRDFDMGKYQLSKHFRF-PW---------PVNHSSQSPDGK---LLIIVGDNPDGLLVDSMTGKTIASLC--G------ 316 (446)
Q Consensus 258 ~v~iwd~~~~~~~~~~~~-~~---------~v~~~~~sp~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~--~------ 316 (446)
+|...|+++|+.+..++. +. +..-+.+..+|+ .++.++.+|.+++.|.++|+++...+ .
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 677889999999998872 11 122233334666 67789999999999999999862210 0
Q ss_pred ----CCC-c----------------------------eeEEEECCCCCEEEEEeCC------------------------
Q 013282 317 ----HLD-F----------------------------SFASAWHPNGVTFATGNQD------------------------ 339 (446)
Q Consensus 317 ----~~~-~----------------------------v~~~~~~p~~~~l~sgs~d------------------------ 339 (446)
..+ + -..++++|...+++....+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 000 0 0125667766665554433
Q ss_pred ---------CcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeecc
Q 013282 340 ---------KTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDF 402 (446)
Q Consensus 340 ---------~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 402 (446)
|.|.-+|+.+ ++.+-..........+. ..-.|..++.++.+|.++.+|.++|+.+.+..-.
T Consensus 432 ~~p~~~~~~g~l~AiD~~t-Gk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPIT-GKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred cCCCCCCCceeEEEEeCCC-CceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 2355555543 44333332211111111 1124456777888999999999999988777643
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.74 E-value=0.0049 Score=46.94 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=72.3
Q ss_pred eeeEEEE-eCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEE
Q 013282 235 TNAVEIY-GSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 313 (446)
Q Consensus 235 v~~i~~~-~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 313 (446)
|++++++ +..+|..-|++|+.|..||+|+- .+.+..+.....|.+++-... ..++.+..+|+|-+|+- .+.+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeee
Confidence 3444443 25566678999999999999984 467778887788888887665 67999999999999985 334445
Q ss_pred ecCCCCceeEEEECC-C--C-CEEEEEeCCCcEE
Q 013282 314 LCGHLDFSFASAWHP-N--G-VTFATGNQDKTCR 343 (446)
Q Consensus 314 ~~~~~~~v~~~~~~p-~--~-~~l~sgs~d~~v~ 343 (446)
.+... .+.++++.. + | .-|++|-.+|.|-
T Consensus 77 iKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55333 355655544 3 2 3688887788764
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.73 E-value=0.0026 Score=62.11 Aligned_cols=163 Identities=9% Similarity=0.053 Sum_probs=87.1
Q ss_pred ceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEE
Q 013282 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS 313 (446)
Q Consensus 234 ~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 313 (446)
....+.. +|+|+. +++ ..+|...|+.....+.... +.-...+|.+ .+.+|+-..+.+|.|+.--+......
T Consensus 34 ~p~~ls~--npngr~-v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 34 YPQSLSH--NPNGRF-VLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp --SEEEE---TTSSE-EEE-EETTEEEEEETTTTEEEEE----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCeeEEE--CCCCCE-EEE-EcCCEEEEEEccCCccccc----CceeEEEEec-CccEEEEECCCeEEEEEcCccccceE
Confidence 3455655 999984 444 5778888888544444332 2355678888 45577777788899974322222223
Q ss_pred ecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 013282 314 LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 314 ~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~ 393 (446)
++.. ..+..+-. |.+|+..+.+ .|.+||... ++.+..+... +|..+.|+++|.++|..+.+. +.|++....
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~-~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~-i~il~~~~~ 175 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWET-GKLIRRIDVS--AVKYVIWSDDGELVALVTKDS-IYILKYNLE 175 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S-S-EEEEEE-HH
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhH-cceeeEEecC--CCcEEEEECCCCEEEEEeCCe-EEEEEecch
Confidence 3321 12333322 7777777655 799999965 7888887643 489999999999999988665 777764432
Q ss_pred ---------e--eEeEeeccccCeEEEEEcCC
Q 013282 394 ---------Y--EKEQEIDFFGEISGISFSPD 414 (446)
Q Consensus 394 ---------~--~~~~~~~~~~~v~~~~~spd 414 (446)
. ....+......|.+..|.-+
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred hcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 0 12222222456777777765
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.69 E-value=0.00013 Score=43.72 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=34.7
Q ss_pred CceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE
Q 013282 308 GKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD 346 (446)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd 346 (446)
++++..+..|...|.+++|+|.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778899999999999999999999999999996
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.069 Score=52.08 Aligned_cols=175 Identities=11% Similarity=0.071 Sum_probs=90.1
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEE--EeCCCCCeEEEEEeCCCcEEEEe-cCc
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEI--YGSPSGAVHFTASNNDCGVRDFD-MGK 266 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~--~~s~~~~~~l~s~s~dg~v~iwd-~~~ 266 (446)
.|.++.| +...|+.-..+|.++++++.... .+...........+.+..+ .+..+| +++. ..++.+.+.. ...
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvL-t~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVL-TGNNRFYVVNNIDE 157 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEE-CCCCeEEEEeCccc
Confidence 6899999 77788888899999999985332 1111000011111122111 112233 2222 2344444432 221
Q ss_pred ceeeEee-eCCCCee---------E-EEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEE
Q 013282 267 YQLSKHF-RFPWPVN---------H-SSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT 335 (446)
Q Consensus 267 ~~~~~~~-~~~~~v~---------~-~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s 335 (446)
....+.+ ..+.... . ..++.+....+....++.+.+.+-...+. +. ..+++..++.||+|+++|.
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl 233 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIAL 233 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEE
Confidence 1111111 1111000 0 12333444444444555555444332211 22 2468999999999999999
Q ss_pred EeCCCcEEEEEccCCCcceEEEecC-CCceEEEEEccCCC
Q 013282 336 GNQDKTCRIWDLRNLSESVAVLKGN-LGAIRSIRYTSDGR 374 (446)
Q Consensus 336 gs~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~l~~s~dg~ 374 (446)
-..+|.+.+....- .+....+... ......+.|+-+..
T Consensus 234 ~t~~g~l~v~ssDf-~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 234 FTDSGNLWVVSSDF-SEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EECCCCEEEEECcc-cceeEEeecCcCCCCcEEEEECCCc
Confidence 99999999988743 4555554433 34566777776543
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00081 Score=64.24 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=95.7
Q ss_pred CCCEE-EEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCE-------EEEEeCCCcEEEEEccCCCc-ceEEE
Q 013282 287 DGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVT-------FATGNQDKTCRIWDLRNLSE-SVAVL 357 (446)
Q Consensus 287 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~-------l~sgs~d~~v~iwd~~~~~~-~~~~~ 357 (446)
+.++| ..+.....++-.|+..|+.+...+-+.+ |.-+.+.|+.+. -+.|-.+..|.-||.|-.+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 44444 4556667899999999999999887666 777888886532 23466688899999986554 23333
Q ss_pred ecC----CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe-eEeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 358 KGN----LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGY-EKEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 358 ~~~----~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
.+| .....|.+-..+| +|++|+.+|.|++||- .+. ....+++...+|..|..+.+|++|+..+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 333 2245666666666 7899999999999996 443 3344667788999999999999987654
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0003 Score=68.43 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=77.5
Q ss_pred CCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceE-EEEEccCCCEEEEEeCCCeEEEEEcCCCeeE
Q 013282 318 LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR-SIRYTSDGRYMATAEPADFVHVYDVKSGYEK 396 (446)
Q Consensus 318 ~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~-~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~ 396 (446)
...+.-+.|+|.-.++|++..+|.|.+.-+ + .+.+.++.-+...++ +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~-n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRL-N-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEe-c-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 346788999999999999999999999988 3 667778776666666 9999999999999999999999999998777
Q ss_pred eEee-ccccCeEEEEEcC
Q 013282 397 EQEI-DFFGEISGISFSP 413 (446)
Q Consensus 397 ~~~~-~~~~~v~~~~~sp 413 (446)
.... .....|.++.|+|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 6632 2345677777864
No 365
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00012 Score=73.19 Aligned_cols=110 Identities=17% Similarity=0.284 Sum_probs=86.3
Q ss_pred eeEEEECCCCCEEEEEe----cCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013282 279 VNHSSQSPDGKLLIIVG----DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 354 (446)
Q Consensus 279 v~~~~~sp~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~ 354 (446)
-+-..|+|...++++++ ..|.|.||- .+|.+.+... .+-.+++++|||..-.|+.|=.-|.+.+|.... .+..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~h 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETH 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceee
Confidence 44567999989888876 367787774 5666544333 223467799999988888888889999999854 5555
Q ss_pred EEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 013282 355 AVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 391 (446)
Q Consensus 355 ~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~ 391 (446)
.....|..+|..+.|||+|..|.++..-|.|.+|.+.
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5556799999999999999999999999999999765
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.55 E-value=0.057 Score=48.39 Aligned_cols=189 Identities=12% Similarity=0.072 Sum_probs=104.0
Q ss_pred eEEEEEe--C-CcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc
Q 013282 191 QVSTLAV--K-DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY 267 (446)
Q Consensus 191 ~v~~l~~--~-~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~ 267 (446)
.++.+++ + +.++++....+.|...++. +.... ...+.+ .+-...|.+ ..++. ++++.-.++.+.++++...
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr-~i~l~g-~~D~EgI~y--~g~~~-~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR-RIPLDG-FGDYEGITY--LGNGR-YVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE-EEE-SS--SSEEEEEE---STTE-EEEEETTTTEEEEEEE---
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE-EEeCCC-CCCceeEEE--ECCCE-EEEEEcCCCcEEEEEEecc
Confidence 4888998 3 5577777778877766653 33332 222222 344566766 44543 5555556899999988331
Q ss_pred ------eeeEeee------CCCCeeEEEECCCCCEEEEEecCCcEEEEECCC---CceEEE--e------cCCCCceeEE
Q 013282 268 ------QLSKHFR------FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT---GKTIAS--L------CGHLDFSFAS 324 (446)
Q Consensus 268 ------~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~---~~~~~~--~------~~~~~~v~~~ 324 (446)
.....+. .+..+..++|.|.++.|+++-...-..||.+.. +..+.. . ......+.++
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 1112222 334588999999888888877766666666543 222211 1 1133457889
Q ss_pred EECC-CCCEEEEEeCCCcEEEEEccCCCcceEEEecCC---------CceEEEEEccCCCEEEEEeCCCeEEEE
Q 013282 325 AWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL---------GAIRSIRYTSDGRYMATAEPADFVHVY 388 (446)
Q Consensus 325 ~~~p-~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~---------~~v~~l~~s~dg~~l~~~~~dg~i~iw 388 (446)
+++| .+++++.......|.++|. . ++++..+.-.. ...-.|+|.++|++.+++ .-+..++|
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d~-~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELDR-Q-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE-T-T---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEECC-C-CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 9999 5677777777889999996 4 66666554322 246789999999766655 44455544
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.48 E-value=0.12 Score=50.60 Aligned_cols=225 Identities=19% Similarity=0.112 Sum_probs=119.1
Q ss_pred EEEEeCCcEEEEe-ccCC----cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC----------C
Q 013282 193 STLAVKDKLLVAG-GFQG----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND----------C 257 (446)
Q Consensus 193 ~~l~~~~~~l~tg-~~dg----~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d----------g 257 (446)
.++++++++||.+ +..| .|+++|+.++.... ..+.. +..-.+.|.++++.++++.... .
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~~----~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIEN----PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEEE----EESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--Ccccc----cccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3444488888865 3333 59999998874332 11111 1111155699988766666333 2
Q ss_pred cEEEEecCcceee--Eeee--CCCC-eeEEEECCCCCEEEEEec---C-CcEEEEECCCC----ceEEEecCCCCce-eE
Q 013282 258 GVRDFDMGKYQLS--KHFR--FPWP-VNHSSQSPDGKLLIIVGD---N-PDGLLVDSMTG----KTIASLCGHLDFS-FA 323 (446)
Q Consensus 258 ~v~iwd~~~~~~~--~~~~--~~~~-v~~~~~sp~~~~l~~~~~---d-~~i~i~d~~~~----~~~~~~~~~~~~v-~~ 323 (446)
.|+.|.+.+.... ..+. ...- ...+..++++++|++... + ..+++.++..+ .....+......+ ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888765432 3343 2222 567888999998876432 2 45888898875 2333333333333 33
Q ss_pred EEECCCCCEEEEEeC---CCcEEEEEccCCCc--ceEEEecCCCceEEEEEccCCCEEEEEe-CCC--eEEEEEcCCCee
Q 013282 324 SAWHPNGVTFATGNQ---DKTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAE-PAD--FVHVYDVKSGYE 395 (446)
Q Consensus 324 ~~~~p~~~~l~sgs~---d~~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~~~~-~dg--~i~iwd~~~~~~ 395 (446)
+... .+.+++.... .+.|...++..... ....+..+...+.-..+...+.+|+... .++ .|+++++..+..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4433 4444444433 45677778865432 2335555555333333444455555444 343 589999983444
Q ss_pred EeEeec-cccCeEEEEEcCCCCcEEEEEec
Q 013282 396 KEQEID-FFGEISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 396 ~~~~~~-~~~~v~~~~~spdg~~l~~~~~D 424 (446)
...+.. -.+.|.++...+++..+......
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss 391 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSS 391 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEE
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeC
Confidence 444433 34556777777777766655433
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.48 E-value=0.011 Score=59.91 Aligned_cols=180 Identities=10% Similarity=-0.005 Sum_probs=100.0
Q ss_pred ceeeEEEEeCCCCCeEEEEEe-----CCC--cEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecC---------
Q 013282 234 ITNAVEIYGSPSGAVHFTASN-----NDC--GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN--------- 297 (446)
Q Consensus 234 ~v~~i~~~~s~~~~~~l~s~s-----~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------- 297 (446)
.+....+ +|+|..++++.. .|. .|.+++. .+.. ..+........-.|+|+|+.+++....
T Consensus 351 ~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4566667 999987655552 244 4555554 2222 333333348889999999988776543
Q ss_pred ---CcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEE---EEccCCCc-ce---EEEec-CCCceEE
Q 013282 298 ---PDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRI---WDLRNLSE-SV---AVLKG-NLGAIRS 366 (446)
Q Consensus 298 ---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~i---wd~~~~~~-~~---~~~~~-~~~~v~~ 366 (446)
+.+.+.++..+.... ...+.|..+.|+|||..+|... ++.|.+ -.... +. .+ ..+.. -...+.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~-G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED-GQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC-CceeecccEEeecccCCcccc
Confidence 223333333332221 2345799999999999988766 466666 33212 22 11 11222 2234688
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEcCC-CeeEeEeec--cccCeEEEEEcCCCCcEEEEEecC
Q 013282 367 IRYTSDGRYMATAEPADFVHVYDVKS-GYEKEQEID--FFGEISGISFSPDTESLFIGVWDR 425 (446)
Q Consensus 367 l~~s~dg~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~D~ 425 (446)
+.|.+++.++ ++..++...+|-+.- |.....+.. ...++..++=+++ .|+++..++
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 9999999855 555555444554332 222212122 2456777777763 455554443
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.011 Score=52.50 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=109.7
Q ss_pred cceeeEeeeCCCCeeEEEECCCCC-EEEEEecCCc-EEEEECCCCceEEEecCCCCc--eeEEEECCCCCEEEEEeC---
Q 013282 266 KYQLSKHFRFPWPVNHSSQSPDGK-LLIIVGDNPD-GLLVDSMTGKTIASLCGHLDF--SFASAWHPNGVTFATGNQ--- 338 (446)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~sgs~--- 338 (446)
.++++.....+.....++++|... -++.+-.-|+ ..++|....+....+...++. --.=.|||+|.+|+..-.
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence 355555566666777888998544 4455554444 578899888776665433221 122468999999987644
Q ss_pred --CCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeC------------------CCeEEEEEcCCCeeEeE
Q 013282 339 --DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEP------------------ADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 339 --d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~------------------dg~i~iwd~~~~~~~~~ 398 (446)
-|.|-|||.+..-+.+..+..|.-....+.|.+||+.|+.+.. .-++.+.|..+|..+.+
T Consensus 137 ~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek 216 (366)
T COG3490 137 PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK 216 (366)
T ss_pred CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh
Confidence 3679999998766777888888878889999999999987643 11345556566654433
Q ss_pred ee----ccccCeEEEEEcCCCCcEEEEEecCC
Q 013282 399 EI----DFFGEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 399 ~~----~~~~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
.. .+.-.|..++..+||..++.+-..|.
T Consensus 217 h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~ 248 (366)
T COG3490 217 HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGP 248 (366)
T ss_pred ccCchhhhhcceeeeeeCCCCcEEEEEEeeCC
Confidence 22 23456889999999998887755544
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.47 E-value=0.085 Score=48.44 Aligned_cols=227 Identities=14% Similarity=0.144 Sum_probs=121.7
Q ss_pred eCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeE-----
Q 013282 197 VKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK----- 271 (446)
Q Consensus 197 ~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~----- 271 (446)
..++.|+.|+.+| |.++++...... .... +...|..+.+ .+.-+.+++. .|+.++++++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~--~~i~--~~~~I~ql~v--l~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP--TRIL--KLSSITQLSV--LPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc--eeEe--ecceEEEEEE--ecccCEEEEE--cCCccEEEEchhhccccccccc
Confidence 3678999999988 899998332221 1111 1222677766 4555533443 35999999987644333
Q ss_pred ----------eeeCCCCeeEEE--ECCCCCEEEEEecCCcEEEEECCCC-----ceEEEecCCCCceeEEEECCCCCEEE
Q 013282 272 ----------HFRFPWPVNHSS--QSPDGKLLIIVGDNPDGLLVDSMTG-----KTIASLCGHLDFSFASAWHPNGVTFA 334 (446)
Q Consensus 272 ----------~~~~~~~v~~~~--~sp~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~l~ 334 (446)
.+.....+...+ -.+.+...+++....+|.+|..... +..+.+. -...+.+++|. ++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence 222233444444 1234444444445558888877643 3455554 34778899998 55777
Q ss_pred EEeCCCcEEEEEccCCCcceEEEec------------CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEe-Eeec
Q 013282 335 TGNQDKTCRIWDLRNLSESVAVLKG------------NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKE-QEID 401 (446)
Q Consensus 335 sgs~d~~v~iwd~~~~~~~~~~~~~------------~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~-~~~~ 401 (446)
.|..++ ..+.|+.+ +.....+.. ...++..+... ++.+|++- +..-.+.|. .|...+ ....
T Consensus 153 v~~~~~-f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 153 VGTSKG-FYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred EEeCCc-eEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE
Confidence 777554 88889864 333322211 11234444443 45666643 333334443 454333 2333
Q ss_pred cccCeEEEEEcCCCCcEEEEEe------cCCcceEEEEecccCceecc
Q 013282 402 FFGEISGISFSPDTESLFIGVW------DRTYGSLLEYGRCRNYSYLD 443 (446)
Q Consensus 402 ~~~~v~~~~~spdg~~l~~~~~------D~~~~~~l~~~~~~~~~~l~ 443 (446)
....+..+++. ..+|++... +-..+.++|....++..+|.
T Consensus 227 W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l~ 272 (275)
T PF00780_consen 227 WSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLPNIRLLC 272 (275)
T ss_pred cCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECCCEEEEe
Confidence 34456666664 346654432 22234556665555555543
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00041 Score=41.36 Aligned_cols=38 Identities=32% Similarity=0.705 Sum_probs=33.9
Q ss_pred cceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 013282 352 ESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYD 389 (446)
Q Consensus 352 ~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd 389 (446)
.++..+..|...|.++.|.+.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778888999999999999999999999999996
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.45 E-value=0.01 Score=60.34 Aligned_cols=143 Identities=14% Similarity=0.122 Sum_probs=83.6
Q ss_pred CCeeEEEECCCCCEEEEEe------cCC--cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCC-CcEEEEEc
Q 013282 277 WPVNHSSQSPDGKLLIIVG------DNP--DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD-KTCRIWDL 347 (446)
Q Consensus 277 ~~v~~~~~sp~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-~~v~iwd~ 347 (446)
..+...+++|+|+.++... .+. .|.+++. .+.......+. ....-.|+|+|..|++.+.. ..+++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3578899999999887765 233 4555564 23332223332 37788999999988887543 22223222
Q ss_pred cCCCcceEEEe--------cCCCceEEEEEccCCCEEEEEeCCCeEEE---EEcCCCee-E---eEee-ccccCeEEEEE
Q 013282 348 RNLSESVAVLK--------GNLGAIRSIRYTSDGRYMATAEPADFVHV---YDVKSGYE-K---EQEI-DFFGEISGISF 411 (446)
Q Consensus 348 ~~~~~~~~~~~--------~~~~~v~~l~~s~dg~~l~~~~~dg~i~i---wd~~~~~~-~---~~~~-~~~~~v~~~~~ 411 (446)
.. ...+..+. ...+.|..+.|||||..||... ++.|++ -....|.. + ..+. .....+.++.|
T Consensus 427 ~~-~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 427 PA-TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CC-CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 11 11111111 2245799999999999888766 477777 44444531 1 1122 22334688999
Q ss_pred cCCCCcEEEEEecC
Q 013282 412 SPDTESLFIGVWDR 425 (446)
Q Consensus 412 spdg~~l~~~~~D~ 425 (446)
.+++.++ ++..++
T Consensus 505 ~~~~~L~-V~~~~~ 517 (591)
T PRK13616 505 RTGDSLV-VGRSDP 517 (591)
T ss_pred ecCCEEE-EEecCC
Confidence 9998854 554433
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.43 E-value=0.12 Score=49.29 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=102.6
Q ss_pred CCcEEEEec-cCCcEEEEEcCCCC-eeeEEEEeec-----CCCceeeEEEEeCCCCCeEEEEE--eC----CCcEEEEec
Q 013282 198 KDKLLVAGG-FQGELICKHLDRPG-VSFCSRTTYD-----DNAITNAVEIYGSPSGAVHFTAS--NN----DCGVRDFDM 264 (446)
Q Consensus 198 ~~~~l~tg~-~dg~i~vw~~~~~~-~~~~~~~~~~-----~~~~v~~i~~~~s~~~~~~l~s~--s~----dg~v~iwd~ 264 (446)
+.++|+..+ ..+.|+|.|+.+.. .....++... ..+...-=.+.--|+|. +++++ .. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456666666 67889999997543 2222233321 00111111111147776 56654 22 256888898
Q ss_pred CcceeeEeeeCC----CCeeEEEECCCCCEEEEEec--------------------CCcEEEEECCCCceEEEecCCCC-
Q 013282 265 GKYQLSKHFRFP----WPVNHSSQSPDGKLLIIVGD--------------------NPDGLLVDSMTGKTIASLCGHLD- 319 (446)
Q Consensus 265 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~- 319 (446)
++.++....... .--..+-+.|..+.+++... ..++.+||+.+.+.++++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 888887776632 22345667887777777632 46799999999999999874332
Q ss_pred -ceeEEEECC--CCCEEEE-EeCCCcEEEEEccCCCc----ceEEEecC-----------------CCceEEEEEccCCC
Q 013282 320 -FSFASAWHP--NGVTFAT-GNQDKTCRIWDLRNLSE----SVAVLKGN-----------------LGAIRSIRYTSDGR 374 (446)
Q Consensus 320 -~v~~~~~~p--~~~~l~s-gs~d~~v~iwd~~~~~~----~~~~~~~~-----------------~~~v~~l~~s~dg~ 374 (446)
....+.|.. +..+-.+ +....+|..|--...+. .+..+... ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 345566654 3333333 33344454443312121 11122110 23478999999999
Q ss_pred EEEEEe-CCCeEEEEEcCCCe---eEeEee-c---------------cccCeEEEEEcCCCCcEEEE
Q 013282 375 YMATAE-PADFVHVYDVKSGY---EKEQEI-D---------------FFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 375 ~l~~~~-~dg~i~iwd~~~~~---~~~~~~-~---------------~~~~v~~~~~spdg~~l~~~ 421 (446)
+|..++ ..|.|+.||+.... ...++. + ..+...-+..|-||+.|++.
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 998766 58999999998643 222222 1 11334668899999999876
No 374
>PHA02713 hypothetical protein; Provisional
Probab=97.40 E-value=0.0085 Score=60.89 Aligned_cols=189 Identities=10% Similarity=0.095 Sum_probs=98.5
Q ss_pred eCCcEEEEeccC------CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC-----cEEEEecC
Q 013282 197 VKDKLLVAGGFQ------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFDMG 265 (446)
Q Consensus 197 ~~~~~l~tg~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg-----~v~iwd~~ 265 (446)
.++..++.||.+ ..+..||..++........ .........+ .-+|. +.+.|+.++ +|..||..
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~~R~~~~~~----~~~g~-IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IKNRCRFSLA----VIDDT-IYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cchhhceeEE----EECCE-EEEECCcCCCCCCceEEEEECC
Confidence 488889999864 2366777766542211111 1111111111 12343 667776653 47889987
Q ss_pred cceeeEeeeCCCCee--EEEECCCCCEEEEEecCC-----------------------cEEEEECCCCce--EEEecCCC
Q 013282 266 KYQLSKHFRFPWPVN--HSSQSPDGKLLIIVGDNP-----------------------DGLLVDSMTGKT--IASLCGHL 318 (446)
Q Consensus 266 ~~~~~~~~~~~~~v~--~~~~sp~~~~l~~~~~d~-----------------------~i~i~d~~~~~~--~~~~~~~~ 318 (446)
+.+-...-..+.+.. +++ .-+++..++||.++ .+..||..+.+= +..+....
T Consensus 376 ~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r 454 (557)
T PHA02713 376 DDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT 454 (557)
T ss_pred CCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc
Confidence 765433222111111 122 22677777777542 477788776532 22222111
Q ss_pred CceeEEEECCCCCEEEEEeCC------CcEEEEEccC--CCcceEEEecCCCceEEEEEccCCCEEEEEeCCC--eEEEE
Q 013282 319 DFSFASAWHPNGVTFATGNQD------KTCRIWDLRN--LSESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD--FVHVY 388 (446)
Q Consensus 319 ~~v~~~~~~p~~~~l~sgs~d------~~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg--~i~iw 388 (446)
.....+++ ++++.+.|+.+ ..+..||..+ ....+..+.........+.+ +|+..++|+.+| .+-.|
T Consensus 455 ~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 455 IRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred ccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 11112222 57777778764 2467898864 23333444333333333333 678888898888 67888
Q ss_pred EcCCCeeE
Q 013282 389 DVKSGYEK 396 (446)
Q Consensus 389 d~~~~~~~ 396 (446)
|+.+.+-.
T Consensus 531 d~~~~~W~ 538 (557)
T PHA02713 531 NVYTYEWN 538 (557)
T ss_pred Cccccccc
Confidence 88776543
No 375
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.014 Score=55.92 Aligned_cols=144 Identities=14% Similarity=0.187 Sum_probs=97.3
Q ss_pred CCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCC-------EEEEEecCCcEEEEECC-CCceEEEec
Q 013282 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGK-------LLIIVGDNPDGLLVDSM-TGKTIASLC 315 (446)
Q Consensus 244 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~~~~~d~~i~i~d~~-~~~~~~~~~ 315 (446)
.+.+.++..|+.-..++-.|++.|+.+........+ -+.+.|+.+ .-++|-.+..|.-.|.+ .|..+....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 333445556677778888999999999988855555 677777532 33456566778777877 343333222
Q ss_pred CCCCceeEEEECC----CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 013282 316 GHLDFSFASAWHP----NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVK 391 (446)
Q Consensus 316 ~~~~~v~~~~~~p----~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~ 391 (446)
....++.-.|+. ..-++|+||..|-||+||.- ..+....+++-..+|..|..+.+|++|++.|. ..+.+-|++
T Consensus 556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred -ehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 223333333332 34589999999999999973 35555667777788999999999998887664 456677764
No 376
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.34 E-value=0.032 Score=53.77 Aligned_cols=193 Identities=14% Similarity=0.146 Sum_probs=107.0
Q ss_pred cceEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEee-----cCCCceeeEEEEe---CCCC--CeEEEEEeCCC
Q 013282 189 QTQVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTY-----DDNAITNAVEIYG---SPSG--AVHFTASNNDC 257 (446)
Q Consensus 189 ~~~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~i~~~~---s~~~--~~~l~s~s~dg 257 (446)
..+|++++. +=.+++.|..+|.+.|.|++.+...+...+.. .....++++.|.- ..++ ...+++|.+.|
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 458999999 78999999999999999997776554322222 1233456665532 1222 24688899999
Q ss_pred cEEEEecC--c-cee----eEee-eCCCCeeEEE-ECCC-C-------------------CEEEEEecCCcEEEEECCCC
Q 013282 258 GVRDFDMG--K-YQL----SKHF-RFPWPVNHSS-QSPD-G-------------------KLLIIVGDNPDGLLVDSMTG 308 (446)
Q Consensus 258 ~v~iwd~~--~-~~~----~~~~-~~~~~v~~~~-~sp~-~-------------------~~l~~~~~d~~i~i~d~~~~ 308 (446)
.+.+|.+. . +.. .... .+..+|..+. ++.+ | .-+++......++++..-+.
T Consensus 166 ~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~ 245 (395)
T PF08596_consen 166 NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS 245 (395)
T ss_dssp EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT--
T ss_pred CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC
Confidence 99999874 1 221 1122 2445554444 2211 1 22444445668999999888
Q ss_pred ceEEEecCCCCceeEEEEC-----CCCCEEEEEeCCCcEEEEEccCCCcceEEEecC----CCceEEEEEccCCCEEEEE
Q 013282 309 KTIASLCGHLDFSFASAWH-----PNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN----LGAIRSIRYTSDGRYMATA 379 (446)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~-----p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~l~~s~dg~~l~~~ 379 (446)
+..++.....-.+..+++- ..+..|++-..+|.|+++.+-. -+.+..+... ...+....++++|..++..
T Consensus 246 k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 246 KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp -EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCccccccccccEECCCCCEEEEe
Confidence 7776655222233344553 3567788888999999999965 4445444432 1245567788999877766
Q ss_pred eCC
Q 013282 380 EPA 382 (446)
Q Consensus 380 ~~d 382 (446)
+..
T Consensus 325 gps 327 (395)
T PF08596_consen 325 GPS 327 (395)
T ss_dssp SSS
T ss_pred Ccc
Confidence 543
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.30 E-value=0.12 Score=46.31 Aligned_cols=185 Identities=16% Similarity=0.182 Sum_probs=113.0
Q ss_pred cCCCceeeEEEEeCCCCCeEEEEEeCCC--cEEEEecCcceeeEeeeCCCCeeE--EEECCCCCEEEEEecCCcEEEEEC
Q 013282 230 DDNAITNAVEIYGSPSGAVHFTASNNDC--GVRDFDMGKYQLSKHFRFPWPVNH--SSQSPDGKLLIIVGDNPDGLLVDS 305 (446)
Q Consensus 230 ~~~~~v~~i~~~~s~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~--~~~sp~~~~l~~~~~d~~i~i~d~ 305 (446)
........+.+ ..+|. ++-+.+.-| .|+.+|+.+++.......+..... ++.. +++.....=.++...+||.
T Consensus 42 d~~aFTQGL~~--~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 42 DPTAFTQGLEF--LDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -TT-EEEEEEE--EETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEET
T ss_pred CCcccCccEEe--cCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcc
Confidence 33445566665 45554 566666555 699999999998887775554432 3333 2233334446889999999
Q ss_pred CCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecC--C---CceEEEEEccCCCEEEEEe
Q 013282 306 MTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGN--L---GAIRSIRYTSDGRYMATAE 380 (446)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~--~---~~v~~l~~s~dg~~l~~~~ 380 (446)
.+-+.+.++.- .+.-..++ .+++.|+.......++++|..+ -+....+... . ..++-+-|- +|...|=.=
T Consensus 118 ~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 118 NTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp TTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred ccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 99998888863 33334555 3666777766677899999865 4444444321 2 235556664 676666555
Q ss_pred CCCeEEEEEcCCCeeEeEeec------------c---ccCeEEEEEcCCCCcEEEEEe
Q 013282 381 PADFVHVYDVKSGYEKEQEID------------F---FGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 381 ~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~~~~spdg~~l~~~~~ 423 (446)
....|...|..+|.....+.- . ..-.++|++.|.+..|++.+.
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 677888999999987655421 0 235899999998888877763
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.23 E-value=0.16 Score=46.55 Aligned_cols=197 Identities=16% Similarity=0.138 Sum_probs=109.8
Q ss_pred eEEEEEe--CCcEEEEeccCCcEEEEEcCCCCeeeEEE-----------EeecCCCceeeEEEEeCCCCCeEEEEEeCCC
Q 013282 191 QVSTLAV--KDKLLVAGGFQGELICKHLDRPGVSFCSR-----------TTYDDNAITNAVEIYGSPSGAVHFTASNNDC 257 (446)
Q Consensus 191 ~v~~l~~--~~~~l~tg~~dg~i~vw~~~~~~~~~~~~-----------~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg 257 (446)
.|..+.+ +-+.|++= .||.+.++++..-....... ........+...+..-...+...++++ ...
T Consensus 37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk 114 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKK 114 (275)
T ss_pred eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECC
Confidence 3666666 22333332 34999999987654322100 001111222222211134444444444 445
Q ss_pred cEEEEecCc----c-eeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCC------------CCc
Q 013282 258 GVRDFDMGK----Y-QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH------------LDF 320 (446)
Q Consensus 258 ~v~iwd~~~----~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~ 320 (446)
.|.+|.... . +..+.+..+..+.+++|. ++.+++|..+ ...+.|+.++.....+... ..+
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKP 191 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCc
Confidence 888887654 3 566777788999999998 5677777655 5888999977654443211 123
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceE--EEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeE
Q 013282 321 SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVA--VLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 321 v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 398 (446)
+..+.. +++.+|++- +..-...|. . +.+.+ .+.- ...+.++++. ..||++... +.|-||++.+++.++.
T Consensus 192 ~~~~~~-~~~e~Ll~~--~~~g~fv~~-~-G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 192 LGIFQL-SDNEFLLCY--DNIGVFVNK-N-GEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred eEEEEe-CCceEEEEe--cceEEEEcC-C-CCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEE
Confidence 333343 345555543 334444454 3 33332 3333 2345566663 357776665 5599999999987776
Q ss_pred eec
Q 013282 399 EID 401 (446)
Q Consensus 399 ~~~ 401 (446)
+..
T Consensus 263 i~~ 265 (275)
T PF00780_consen 263 IPL 265 (275)
T ss_pred EEC
Confidence 653
No 379
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.19 E-value=0.22 Score=52.22 Aligned_cols=198 Identities=13% Similarity=0.085 Sum_probs=113.1
Q ss_pred CcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCC-----ceeeEEEEeCC--------------CCCeEEEEEeCCCcE
Q 013282 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNA-----ITNAVEIYGSP--------------SGAVHFTASNNDCGV 259 (446)
Q Consensus 199 ~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~i~~~~s~--------------~~~~~l~s~s~dg~v 259 (446)
+..|+.++.++.|...|..+++............. ....+.++-.+ .+. .++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence 56677777788888888877765443222111110 01122222111 222 57778899999
Q ss_pred EEEecCcceeeEeeeCCCCee-------------EEEECC--CCCEEEEEec----------CCcEEEEECCCCceEEEe
Q 013282 260 RDFDMGKYQLSKHFRFPWPVN-------------HSSQSP--DGKLLIIVGD----------NPDGLLVDSMTGKTIASL 314 (446)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~-------------~~~~sp--~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~ 314 (446)
...|..+|+....+...+.|. .+.-+| .+..+++|+. +|.|+-+|+++|+.+-.+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999998776443331 112223 2456666643 688999999999988776
Q ss_pred cCC---------CC---------ceeEEEECCCCCEEEEEeC------------------CCcEEEEEccCCCcceEEEe
Q 013282 315 CGH---------LD---------FSFASAWHPNGVTFATGNQ------------------DKTCRIWDLRNLSESVAVLK 358 (446)
Q Consensus 315 ~~~---------~~---------~v~~~~~~p~~~~l~sgs~------------------d~~v~iwd~~~~~~~~~~~~ 358 (446)
..- .+ .-...++.|...+++.+.. .++|.-.|+++ ++..-.++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T-Gk~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT-GKERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCC-CceEEEec
Confidence 410 00 0123455554444444321 23355555544 45444443
Q ss_pred c-CCC--------ceEEEEEcc-CCC---EEEEEeCCCeEEEEEcCCCeeEeE
Q 013282 359 G-NLG--------AIRSIRYTS-DGR---YMATAEPADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 359 ~-~~~--------~v~~l~~s~-dg~---~l~~~~~dg~i~iwd~~~~~~~~~ 398 (446)
. |.. ...-+.+.. +|+ .++.++.+|.+.++|.++|+.+..
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 3 210 111122332 663 788999999999999999986654
No 380
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.14 E-value=0.24 Score=46.85 Aligned_cols=218 Identities=16% Similarity=0.168 Sum_probs=108.1
Q ss_pred CCcEEEEe-ccCCc--EEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeee
Q 013282 198 KDKLLVAG-GFQGE--LICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 198 ~~~~l~tg-~~dg~--i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (446)
+|+.|+.+ ..+|. +.+.|+.+... .+++.+.........+ +|.++.+++ ......|+..|+.+.+....+.
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i---~QLTdg~g~~~~g~~~--s~~~~~~~Y-v~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEI---TQLTDGPGDNTFGGFL--SPDDRALYY-VKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EE---EE---SS-B-TTT-EE---TTSSEEEE-EETTTEEEEEETTT--EEEEEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEE---EECccCCCCCccceEE--ecCCCeEEE-EECCCeEEEEECCcCcEEEEEE
Confidence 67555554 44665 45556655532 2333332222223333 777765444 4355789999999988776666
Q ss_pred CCCC-eeEEEE--CCCCCEEEEEec----------------------CCcEEEEECCCCceEEEecCCCCceeEEEECC-
Q 013282 275 FPWP-VNHSSQ--SPDGKLLIIVGD----------------------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHP- 328 (446)
Q Consensus 275 ~~~~-v~~~~~--sp~~~~l~~~~~----------------------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p- 328 (446)
.+.. +-...| +.++..++-.-. ...|.-.|+.+|+....+. -..++..+.|+|
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence 4333 333444 446666543311 1346777888887655554 567888999999
Q ss_pred CCCEEEEEeC---CC-cEEEEEccCCCcceEEEecCC--CceEEEEEccCCCEEEEEe-----CCCeEEEEEcCCCeeEe
Q 013282 329 NGVTFATGNQ---DK-TCRIWDLRNLSESVAVLKGNL--GAIRSIRYTSDGRYMATAE-----PADFVHVYDVKSGYEKE 397 (446)
Q Consensus 329 ~~~~l~sgs~---d~-~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~s~dg~~l~~~~-----~dg~i~iwd~~~~~~~~ 397 (446)
+..+|+.|-. +. .-|||-++..+.....+..+. ..+..=-|.|||..|.--+ .+..|.-+|+.++....
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 5555555443 33 258898876666555554443 2455567999998765432 23468888998875432
Q ss_pred EeeccccCeEEEEEcCCCCcEEEEEec
Q 013282 398 QEIDFFGEISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 398 ~~~~~~~~v~~~~~spdg~~l~~~~~D 424 (446)
+. ....-..+--++||++++-=+.|
T Consensus 279 -~~-~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 279 -LM-EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EE-EE-SEEEEEE-TTSSEEEEEE--
T ss_pred -EE-eCCceeeeEEcCCCCEEEecCCC
Confidence 22 22234566678898877644544
No 381
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.13 E-value=0.22 Score=46.21 Aligned_cols=221 Identities=15% Similarity=0.043 Sum_probs=130.6
Q ss_pred EEeCCcEEEEe----------ccCCcEEEEEcCCCCeeeEEEEeecCCC----ceeeEEEEeCCCCCeEEEE-EeCCCcE
Q 013282 195 LAVKDKLLVAG----------GFQGELICKHLDRPGVSFCSRTTYDDNA----ITNAVEIYGSPSGAVHFTA-SNNDCGV 259 (446)
Q Consensus 195 l~~~~~~l~tg----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~----~v~~i~~~~s~~~~~~l~s-~s~dg~v 259 (446)
++.+++.++++ -..-.|.+||..+-.......+...+.. ..+.+.+ +.+|+.+++. .+--.+|
T Consensus 43 ~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~l--s~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 43 LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFAL--SADGKFLYVQNFTPATSV 120 (342)
T ss_dssp E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE---TTSSEEEEEEESSSEEE
T ss_pred ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEE--ccCCcEEEEEccCCCCeE
Confidence 45577777654 2344689999988765554444332111 2234445 8888854332 2345679
Q ss_pred EEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECC-CCceEEEec----CCCCcee-EEEECCCCCEE
Q 013282 260 RDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-TGKTIASLC----GHLDFSF-ASAWHPNGVTF 333 (446)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~----~~~~~v~-~~~~~p~~~~l 333 (446)
.|.|+..++.+..+..++...-.-.. ...|.+.+.||.+.-..+. .|+...+.. .-.++++ .-++...+..+
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~ 198 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRL 198 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEE
T ss_pred EEEECCCCceeeeecCCCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeE
Confidence 99999999999988876633332222 2457788889999888887 666553321 1223333 33455556667
Q ss_pred EEEeCCCcEEEEEccCCC-cceEEEecC----------CCceEEEEEccCCCEEEEEeC---CC-------eEEEEEcCC
Q 013282 334 ATGNQDKTCRIWDLRNLS-ESVAVLKGN----------LGAIRSIRYTSDGRYMATAEP---AD-------FVHVYDVKS 392 (446)
Q Consensus 334 ~sgs~d~~v~iwd~~~~~-~~~~~~~~~----------~~~v~~l~~s~dg~~l~~~~~---dg-------~i~iwd~~~ 392 (446)
+.-+..|.|+--|+.... +....+..- .+.-.-+++++....|++.-. ++ .|.++|+.+
T Consensus 199 ~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t 278 (342)
T PF06433_consen 199 YFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT 278 (342)
T ss_dssp EEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT
T ss_pred EEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC
Confidence 778899999998885422 111122110 122344677765555544322 12 489999999
Q ss_pred CeeEeEeeccccCeEEEEEcCCCC-cEEE
Q 013282 393 GYEKEQEIDFFGEISGISFSPDTE-SLFI 420 (446)
Q Consensus 393 ~~~~~~~~~~~~~v~~~~~spdg~-~l~~ 420 (446)
++.+.++.. ..++.+|..+.+.+ +|++
T Consensus 279 ~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 279 HKRVARIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp TEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred CeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence 998888763 34688999998776 4443
No 382
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.12 E-value=0.053 Score=49.07 Aligned_cols=145 Identities=17% Similarity=0.239 Sum_probs=88.6
Q ss_pred CeeEEEECCCCCEEEEEe---cCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEE-ccCCCcc
Q 013282 278 PVNHSSQSPDGKLLIIVG---DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWD-LRNLSES 353 (446)
Q Consensus 278 ~v~~~~~sp~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd-~~~~~~~ 353 (446)
.+...+++++++.++... ....++++. .+.....+. ....+..-.|++++...+....+...+++- .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887665 333444444 333333322 223677889999988777777677777774 2221211
Q ss_pred eEEEec--CCCceEEEEEccCCCEEEEEe---CCCeEEEEEcC---CC--e----eEeEeeccccCeEEEEEcCCCCcEE
Q 013282 354 VAVLKG--NLGAIRSIRYTSDGRYMATAE---PADFVHVYDVK---SG--Y----EKEQEIDFFGEISGISFSPDTESLF 419 (446)
Q Consensus 354 ~~~~~~--~~~~v~~l~~s~dg~~l~~~~---~dg~i~iwd~~---~~--~----~~~~~~~~~~~v~~~~~spdg~~l~ 419 (446)
...+.. ..+.|+++++||||..+|... .++.|.+=-+. .+ . ...........+..++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222221 112899999999999887665 34666666443 22 1 1111112345789999999998777
Q ss_pred EEEecC
Q 013282 420 IGVWDR 425 (446)
Q Consensus 420 ~~~~D~ 425 (446)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 664433
No 383
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.04 E-value=0.061 Score=51.72 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=81.7
Q ss_pred CeeEEEECCCCCEEEEEe-----------cCC-cEEEEECC--CCce--EEEecCCCCceeEEEECCCCCEEEEEeCCCc
Q 013282 278 PVNHSSQSPDGKLLIIVG-----------DNP-DGLLVDSM--TGKT--IASLCGHLDFSFASAWHPNGVTFATGNQDKT 341 (446)
Q Consensus 278 ~v~~~~~sp~~~~l~~~~-----------~d~-~i~i~d~~--~~~~--~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~ 341 (446)
....|+|.++|+++++-. ..+ .|.+++-. .|+. ...+.........+++.++| +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456788999998776642 123 67777644 2332 23343334456889999998 444 444444
Q ss_pred EEEEEccCCC----cc--e-EEEec----CCCceEEEEEccCCCEEEEEeC-------------------CCeEEEEEcC
Q 013282 342 CRIWDLRNLS----ES--V-AVLKG----NLGAIRSIRYTSDGRYMATAEP-------------------ADFVHVYDVK 391 (446)
Q Consensus 342 v~iwd~~~~~----~~--~-~~~~~----~~~~v~~l~~s~dg~~l~~~~~-------------------dg~i~iwd~~ 391 (446)
.++.|..... +. + ..+.. +......++|.|||++.++-+. .|.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 4444553211 11 1 12222 1234778999999986654441 1456666666
Q ss_pred CCeeEeEeeccccCeEEEEEcCCCCcEEEEEec
Q 013282 392 SGYEKEQEIDFFGEISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 392 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D 424 (446)
++.. ..+........+++|+|+|+++++-..+
T Consensus 173 g~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 5542 2232223346789999999887654433
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.02 E-value=0.28 Score=49.52 Aligned_cols=192 Identities=11% Similarity=0.005 Sum_probs=112.0
Q ss_pred CcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCC-Cce-------eeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee
Q 013282 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDN-AIT-------NAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS 270 (446)
Q Consensus 199 ~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v-------~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~ 270 (446)
+..|+.++.++.|+..|..+++............ ... ..+.+ .+. .++.++.++.|..+|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~-~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDG-KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECC-EEEEEcCCCEEEEEECCCCCEE
Confidence 5677777778888888888776554332211100 000 11122 123 4667778999999999999998
Q ss_pred EeeeCCCC--eeEEEECC--CCCEEEEEec------CCcEEEEECCCCceEEEecCCCC---------------------
Q 013282 271 KHFRFPWP--VNHSSQSP--DGKLLIIVGD------NPDGLLVDSMTGKTIASLCGHLD--------------------- 319 (446)
Q Consensus 271 ~~~~~~~~--v~~~~~sp--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~--------------------- 319 (446)
..+..... -..+.-+| .+..++++.. +|.|+.+|.++|+.+-.+..-..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 87762111 01122223 2334555432 68899999999998876532110
Q ss_pred -----------ceeEEEECCCCCEEEEEeCC-----C-----------cEEEEEccCCCcceEEEec--CC-------Cc
Q 013282 320 -----------FSFASAWHPNGVTFATGNQD-----K-----------TCRIWDLRNLSESVAVLKG--NL-------GA 363 (446)
Q Consensus 320 -----------~v~~~~~~p~~~~l~sgs~d-----~-----------~v~iwd~~~~~~~~~~~~~--~~-------~~ 363 (446)
.-..+++.|...+++.+.-+ + +|.-.|+++ ++..-.++. |. .+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T-G~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT-GKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc-CCEEEeeeCCCCCCccccCCCC
Confidence 01134666655666655422 2 455556644 555544443 21 11
Q ss_pred eEEEEEccCCC---EEEEEeCCCeEEEEEcCCCeeE
Q 013282 364 IRSIRYTSDGR---YMATAEPADFVHVYDVKSGYEK 396 (446)
Q Consensus 364 v~~l~~s~dg~---~l~~~~~dg~i~iwd~~~~~~~ 396 (446)
..-+.+..+|+ .++.+..+|.+++.|..+|+.+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 12233335776 7889999999999999999765
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.00 E-value=0.24 Score=47.36 Aligned_cols=180 Identities=10% Similarity=0.056 Sum_probs=84.7
Q ss_pred CCcEEEEec------cCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeC----------------
Q 013282 198 KDKLLVAGG------FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNN---------------- 255 (446)
Q Consensus 198 ~~~~l~tg~------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~---------------- 255 (446)
+|+.++++- .-|.+.+.|-++-... ..-..........-+|.+.|..+ +++|+..
T Consensus 140 ~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~--g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 140 DGRIMISALGDADGNGPGGFVLLDGETFEVK--GRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp S--EEEEEEEETTS-S--EEEEE-TTT--EE--EE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHH
T ss_pred CccEEEEeccCCCCCCCCcEEEEcCcccccc--ceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhh
Confidence 676777652 2244566665443322 12222223344555666677655 5666542
Q ss_pred ----CCcEEEEecCcceeeEeeeCC---CCeeEEEECC--CCCEEEEE-ecCCcEEEEEC-CCCc----eEEEecC----
Q 013282 256 ----DCGVRDFDMGKYQLSKHFRFP---WPVNHSSQSP--DGKLLIIV-GDNPDGLLVDS-MTGK----TIASLCG---- 316 (446)
Q Consensus 256 ----dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~sp--~~~~l~~~-~~d~~i~i~d~-~~~~----~~~~~~~---- 316 (446)
..++.+||+.+.+.++++... ..+..+.|.. +..+-+++ .-..+|..|-- ..++ .+..+..
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 467999999999999999844 2345666654 44444443 34455655543 3332 2222211
Q ss_pred -C------------CCceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCcceEEEe---c---------------CCCce
Q 013282 317 -H------------LDFSFASAWHPNGVTFATGNQ-DKTCRIWDLRNLSESVAVLK---G---------------NLGAI 364 (446)
Q Consensus 317 -~------------~~~v~~~~~~p~~~~l~sgs~-d~~v~iwd~~~~~~~~~~~~---~---------------~~~~v 364 (446)
- ..-|+.+.+|.|.++|...++ .|.||.||+..+..+..+-+ + -.+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 0 245788999999999999887 89999999987665544322 1 11234
Q ss_pred EEEEEccCCCEEEEEe
Q 013282 365 RSIRYTSDGRYMATAE 380 (446)
Q Consensus 365 ~~l~~s~dg~~l~~~~ 380 (446)
.-+..|-||+.|+..+
T Consensus 377 qMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --EEE-TTSSEEEEE-
T ss_pred CeEEEccCCeEEEEEe
Confidence 6788888998876553
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0036 Score=64.81 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=74.2
Q ss_pred CCCEEEEEecCCcEEEEECCCC-ceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceE
Q 013282 287 DGKLLIIVGDNPDGLLVDSMTG-KTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIR 365 (446)
Q Consensus 287 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~ 365 (446)
.+..+++|++.|.+...|.... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+.. +++++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 4567899999999999887643 22222223457999999999999999999999999999965 778888876665544
Q ss_pred EE---EEccCCCEEEEEeCCCeEEEEE
Q 013282 366 SI---RYTSDGRYMATAEPADFVHVYD 389 (446)
Q Consensus 366 ~l---~~s~dg~~l~~~~~dg~i~iwd 389 (446)
++ .+..++..++++...|. +|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 43 44455667888877775 454
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.89 E-value=0.36 Score=44.62 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=86.1
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeE-eeeCC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSK-HFRFP 276 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~ 276 (446)
..+....++..|.| |.....+..... ......+.+..+.. +++|. ++++++......-|+.-...-.. .....
T Consensus 113 ~~~~~~l~~~~G~i--y~T~DgG~tW~~-~~~~~~gs~~~~~r--~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~ 186 (302)
T PF14870_consen 113 GDGSAELAGDRGAI--YRTTDGGKTWQA-VVSETSGSINDITR--SSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSS 186 (302)
T ss_dssp ETTEEEEEETT--E--EEESSTTSSEEE-EE-S----EEEEEE---TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SS
T ss_pred CCCcEEEEcCCCcE--EEeCCCCCCeeE-cccCCcceeEeEEE--CCCCc-EEEEECcccEEEEecCCCccceEEccCcc
Confidence 34444445556654 444444443332 23344455666554 78887 56666555555677764322222 22256
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEEC-CCCceEEE----ecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 013282 277 WPVNHSSQSPDGKLLIIVGDNPDGLLVDS-MTGKTIAS----LCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS 351 (446)
Q Consensus 277 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~-~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~ 351 (446)
..|..|.|.|++.+.+++ ..|.|+.=+. .....-.. +....-.+..++|.+++...|+|+.. ++ +... ..+
T Consensus 187 ~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~-DgG 262 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVST-DGG 262 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEES-STT
T ss_pred ceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeC-CCC
Confidence 789999999998866654 7888888772 22221111 11122247899999998888877654 22 2333 335
Q ss_pred cceEEEec---CCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 013282 352 ESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVY 388 (446)
Q Consensus 352 ~~~~~~~~---~~~~v~~l~~s~dg~~l~~~~~dg~i~iw 388 (446)
+.-+.... -...+..+.|.+..+-++ -+.+|.|.-|
T Consensus 263 ktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 263 KTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp SS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred ccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 54444432 234577888876655444 4567866544
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.0024 Score=54.79 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=85.9
Q ss_pred EEEEEeCCCcEEEEecCcceeeEee--eCCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-CceEEEecCCCCce-eEE
Q 013282 249 HFTASNNDCGVRDFDMGKYQLSKHF--RFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-GKTIASLCGHLDFS-FAS 324 (446)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v-~~~ 324 (446)
.+..-+.||.|+-+++...+..-.- .+... ...-.-+..+++|+.+|.|++|.... +.....+..-...| ..+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 3445568888888887653321111 11111 11222456799999999999998762 11111111111222 222
Q ss_pred EECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCC-CceEEEEEccCCCEEEEE--eCCCeEEEEEcCC
Q 013282 325 AWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNL-GAIRSIRYTSDGRYMATA--EPADFVHVYDVKS 392 (446)
Q Consensus 325 ~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~~~--~~dg~i~iwd~~~ 392 (446)
.--.++.+..+++++|.||.|++. +.+.+.....|. .++..+..+..+++|+.+ |.+..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIK-PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccc-cCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 323356688999999999999994 466666666666 556666666667777777 7788888888764
No 389
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.85 E-value=0.79 Score=47.94 Aligned_cols=151 Identities=11% Similarity=0.132 Sum_probs=94.2
Q ss_pred eeCCCCeeEEEECCCCCEEEEEecC--------------CcEEEEECCCCceEEEec--CCC--CceeEEEECCC-CCEE
Q 013282 273 FRFPWPVNHSSQSPDGKLLIIVGDN--------------PDGLLVDSMTGKTIASLC--GHL--DFSFASAWHPN-GVTF 333 (446)
Q Consensus 273 ~~~~~~v~~~~~sp~~~~l~~~~~d--------------~~i~i~d~~~~~~~~~~~--~~~--~~v~~~~~~p~-~~~l 333 (446)
.........+++.+....+++.+.. ..++++|-.+-+.++..+ ..+ -.+.++.|..+ +.++
T Consensus 711 vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~ 790 (1096)
T KOG1897|consen 711 VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYY 790 (1096)
T ss_pred ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEE
Confidence 3344456667777644444444321 235666766655544332 111 23555668877 6777
Q ss_pred EEEe----------CCCcEEEEEccCCCcceEEEecC--CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec
Q 013282 334 ATGN----------QDKTCRIWDLRNLSESVAVLKGN--LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID 401 (446)
Q Consensus 334 ~sgs----------~d~~v~iwd~~~~~~~~~~~~~~--~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 401 (446)
+.|. ..|.|.++.... ...++....+ .+.+.++.. -+|++|| +-+.+|++|+..+.+.++....
T Consensus 791 vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrLye~t~~~eLr~e~~ 866 (1096)
T KOG1897|consen 791 VVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRLYEWTTERELRIECN 866 (1096)
T ss_pred EEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEEEEccccceehhhhc
Confidence 7775 256778887755 3333333222 345555542 2577665 5677899999999888877778
Q ss_pred cccCeEEEEEcCCCCcEEEEEecCCc
Q 013282 402 FFGEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 402 ~~~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
+..++..+...-.|..+++|-.-+++
T Consensus 867 ~~~~~~aL~l~v~gdeI~VgDlm~Si 892 (1096)
T KOG1897|consen 867 ISNPIIALDLQVKGDEIAVGDLMRSI 892 (1096)
T ss_pred ccCCeEEEEEEecCcEEEEeeccceE
Confidence 88899999999999999988554443
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.013 Score=61.26 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=95.6
Q ss_pred CCCeeEEEECCCCCEEEEEec--CCcEEEEECCCCce-----EEEecC------CCCceeEEEECCCC-CEEEEEeCCCc
Q 013282 276 PWPVNHSSQSPDGKLLIIVGD--NPDGLLVDSMTGKT-----IASLCG------HLDFSFASAWHPNG-VTFATGNQDKT 341 (446)
Q Consensus 276 ~~~v~~~~~sp~~~~l~~~~~--d~~i~i~d~~~~~~-----~~~~~~------~~~~v~~~~~~p~~-~~l~sgs~d~~ 341 (446)
..++..+...+|+...++... +-.|+.||+++-.. ...|+. ......++.|+|.- ...+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 445677777888776655443 34788999874321 111222 22445678899843 34667778999
Q ss_pred EEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeec----cccCeEEEEEcCCCCc
Q 013282 342 CRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEID----FFGEISGISFSPDTES 417 (446)
Q Consensus 342 v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~spdg~~ 417 (446)
|++.-+......+..+. -....++++|+|.|+.++.|-..|++.-|-.. +.....+.. ....|.+|.|-..-.+
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence 99998865444445543 35578999999999999999999999988754 333333322 2367999999877666
Q ss_pred EEE
Q 013282 418 LFI 420 (446)
Q Consensus 418 l~~ 420 (446)
|++
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 654
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.78 E-value=0.31 Score=42.32 Aligned_cols=207 Identities=12% Similarity=0.098 Sum_probs=111.2
Q ss_pred CcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEE-EEeCCCcEEEEec--CcceeeEeee-
Q 013282 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFT-ASNNDCGVRDFDM--GKYQLSKHFR- 274 (446)
Q Consensus 199 ~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~-s~s~dg~v~iwd~--~~~~~~~~~~- 274 (446)
+.++..--..|.|.-||...+.... ..+ ... +...+.+ .-.++...++ .++.--.|--||. +.-.+.+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~r-a~i-e~p--~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~e 101 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYR-AKI-EGP--PSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFE 101 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEE-EEE-ecC--cceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccc
Confidence 3444455556777778887654332 111 111 1112211 1122222233 3333333445663 2233333321
Q ss_pred -----CCCCeeEEEECCCCCEEEEEec----------CCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEE-EEeC
Q 013282 275 -----FPWPVNHSSQSPDGKLLIIVGD----------NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFA-TGNQ 338 (446)
Q Consensus 275 -----~~~~v~~~~~sp~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-sgs~ 338 (446)
.....+.-..+|+|++++ |.. .|.++.|-+ +..+..+...-+..+.++|+.+.+.+. +-+.
T Consensus 102 v~~d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 102 VQPDRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred cCchHHhcccccCccCCCCceee-eeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccC
Confidence 244567778899999843 332 122333321 112222222334456789988776654 4556
Q ss_pred CCcEEEEEccCC------CcceEEEec----CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEE
Q 013282 339 DKTCRIWDLRNL------SESVAVLKG----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 408 (446)
Q Consensus 339 d~~v~iwd~~~~------~~~~~~~~~----~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 408 (446)
+-+|.-||..-. .+.+..++. .....-.++...+|.+.++.-..++|...|+.+|+.+..+.-....|++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 777888884211 122222221 0111223455667887777778889999999999999999888889999
Q ss_pred EEEcC
Q 013282 409 ISFSP 413 (446)
Q Consensus 409 ~~~sp 413 (446)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99973
No 392
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.76 E-value=0.0068 Score=37.32 Aligned_cols=37 Identities=30% Similarity=0.540 Sum_probs=30.1
Q ss_pred CceEEEEEccCC---CEEEEEeCCCeEEEEEcCCCeeEeE
Q 013282 362 GAIRSIRYTSDG---RYMATAEPADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 362 ~~v~~l~~s~dg---~~l~~~~~dg~i~iwd~~~~~~~~~ 398 (446)
++|++++|+|.. .+|+.+...|.|+|+|++++...++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~~Q 40 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMRRQ 40 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccceE
Confidence 579999999854 5999999999999999997544433
No 393
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.73 E-value=0.48 Score=43.82 Aligned_cols=147 Identities=12% Similarity=0.077 Sum_probs=74.9
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 354 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~ 354 (446)
....+..+.-+++|++++++.......-||.-...-...-......|.++.|.|++.+.+++ ..|.|+.=+........
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 44668888889999988887665555667753221112222346789999999998876655 88889888732211111
Q ss_pred EE----EecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee---ccccCeEEEEEcCCCCcEEEEEecC
Q 013282 355 AV----LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLFIGVWDR 425 (446)
Q Consensus 355 ~~----~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~~D~ 425 (446)
.. +....-.+..++|.+++...|+|+ .|.+ +.....|+.-.... ...+.+..|.|.+..+-+ +-+.+|
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G 296 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDG 296 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STT
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCc
Confidence 11 111223478899999988777655 4433 33445555444333 234568888898664444 444554
No 394
>PHA02713 hypothetical protein; Provisional
Probab=96.68 E-value=0.19 Score=51.11 Aligned_cols=172 Identities=9% Similarity=0.020 Sum_probs=83.9
Q ss_pred eEEEEEeCC------CcEEEEecCcceeeEeeeCCCC-eeEEEECCCCCEEEEEecCC-----cEEEEECCCCc--eEEE
Q 013282 248 VHFTASNND------CGVRDFDMGKYQLSKHFRFPWP-VNHSSQSPDGKLLIIVGDNP-----DGLLVDSMTGK--TIAS 313 (446)
Q Consensus 248 ~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d~-----~i~i~d~~~~~--~~~~ 313 (446)
.+++.|+.+ ..+..||+.+......-..+.+ -......-+|+..+.||.++ .+..||..+.+ .+..
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence 367777643 3477888877654222111111 11122223677778887653 47889987653 2222
Q ss_pred ecCCCCceeEEEECCCCCEEEEEeCCC-----------------------cEEEEEccCC-CcceEEEecCCCceEEEEE
Q 013282 314 LCGHLDFSFASAWHPNGVTFATGNQDK-----------------------TCRIWDLRNL-SESVAVLKGNLGAIRSIRY 369 (446)
Q Consensus 314 ~~~~~~~v~~~~~~p~~~~l~sgs~d~-----------------------~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~ 369 (446)
+.........++. +|++.+.|+.++ ++..||..+. ...+..+....... ++ .
T Consensus 385 mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~ 460 (557)
T PHA02713 385 MPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-V 460 (557)
T ss_pred CCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cE-E
Confidence 2211111222222 677888887653 4667777531 11111111111111 11 2
Q ss_pred ccCCCEEEEEeCC------CeEEEEEcCC-Ce--eEeEeeccccCeEEEEEcCCCCcEEEEEecC
Q 013282 370 TSDGRYMATAEPA------DFVHVYDVKS-GY--EKEQEIDFFGEISGISFSPDTESLFIGVWDR 425 (446)
Q Consensus 370 s~dg~~l~~~~~d------g~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~ 425 (446)
.-+|+..+.|+.+ ..+..||..+ .+ .+..+.........+.+ +|+..++|+.|+
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecc
Confidence 2346666666653 2467899887 32 22222222222222223 577778888777
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.63 E-value=0.0086 Score=38.13 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=30.9
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT 310 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 310 (446)
.+..|.+++|+|...++|.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 5667999999999999999999999999998 5554
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.61 E-value=0.52 Score=42.66 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=87.9
Q ss_pred ceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEE-CCCCceEE
Q 013282 234 ITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVD-SMTGKTIA 312 (446)
Q Consensus 234 ~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d-~~~~~~~~ 312 (446)
.+....+ ++++..+.+....++.-.+|-...+...........+....|++++...++...+....++. ..+++...
T Consensus 25 ~~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEE--CCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 3455666 89998655555334444444433333333332334678889999987777666666666663 33343221
Q ss_pred -EecC--CCCceeEEEECCCCCEEEEEeC---CCcEEEEEccCC--C------cceEEEecCCCceEEEEEccCCCEEEE
Q 013282 313 -SLCG--HLDFSFASAWHPNGVTFATGNQ---DKTCRIWDLRNL--S------ESVAVLKGNLGAIRSIRYTSDGRYMAT 378 (446)
Q Consensus 313 -~~~~--~~~~v~~~~~~p~~~~l~sgs~---d~~v~iwd~~~~--~------~~~~~~~~~~~~v~~l~~s~dg~~l~~ 378 (446)
.+.. -...|.+++++|+|..+|.... ++.|.+--+... + .+..........++.+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 1221 1128999999999998887662 466666654211 1 122222233457899999999987776
Q ss_pred EeCCC
Q 013282 379 AEPAD 383 (446)
Q Consensus 379 ~~~dg 383 (446)
+...+
T Consensus 183 ~~~~~ 187 (253)
T PF10647_consen 183 GRSAG 187 (253)
T ss_pred eCCCC
Confidence 66544
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.56 E-value=0.17 Score=51.58 Aligned_cols=218 Identities=15% Similarity=0.169 Sum_probs=110.6
Q ss_pred CCcEEEEeccCC------cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC------CcEEEEecC
Q 013282 198 KDKLLVAGGFQG------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND------CGVRDFDMG 265 (446)
Q Consensus 198 ~~~~l~tg~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d------g~v~iwd~~ 265 (446)
.+.+++.||..+ .+.++|..+.....+.... .... ..++.+ -++ .+.++|+.+ .++..||..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~-~~~~~~---~~~-~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRC-RVGVAV---LNG-KLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccc-cccEEE---ECC-EEEEEccccCCCcccceEEEecCC
Confidence 456677777774 5777887766443322221 1111 222222 233 478888888 357788887
Q ss_pred cceeeEeeeCCCCeeEEE-ECCCCCEEEEEecCCc-----EEEEECCCCc--eEEEecCCCCceeEEEECCCCCEEEEEe
Q 013282 266 KYQLSKHFRFPWPVNHSS-QSPDGKLLIIVGDNPD-----GLLVDSMTGK--TIASLCGHLDFSFASAWHPNGVTFATGN 337 (446)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~-~sp~~~~l~~~~~d~~-----i~i~d~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~sgs 337 (446)
+.+-...-....+-.... ..-+|.+.|+||.+|. +-.||..+.+ .+..+.......-.+.+ +|.+.++|+
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG 435 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGG 435 (571)
T ss_pred CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcC
Confidence 766443222111111111 1236788899988764 6677776543 22222221122222222 788888888
Q ss_pred CCC------cEEEEEccCCC-cceEEEecCCCceEEEEEccCCCEEEEEeCCC-----eEEEEEcCCCeeEeEeeccccC
Q 013282 338 QDK------TCRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-----FVHVYDVKSGYEKEQEIDFFGE 405 (446)
Q Consensus 338 ~d~------~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 405 (446)
.++ ++..||..+.. ..+..+..-..... ++ .-++.+.+.|+.++ +|..||..+.+-... .....+
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~ 512 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSP 512 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccc
Confidence 655 46788875411 11222221111121 22 23567777888776 377888887643322 212222
Q ss_pred eEEEEEcC-CCCcEEEEEecCC
Q 013282 406 ISGISFSP-DTESLFIGVWDRT 426 (446)
Q Consensus 406 v~~~~~sp-dg~~l~~~~~D~~ 426 (446)
...+.... +++..++|++|+.
T Consensus 513 rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 513 RSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred cccccEEEECCEEEEEecccCc
Confidence 22222222 3556667777765
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.0062 Score=63.17 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=71.4
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEE
Q 013282 329 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISG 408 (446)
Q Consensus 329 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 408 (446)
.+..++.|+..|.+-..|++..-.+...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+..|..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45678999999999999985422222222234679999999999999999999999999999999888888777766555
Q ss_pred EE---EcCCCCcEEEEEecC
Q 013282 409 IS---FSPDTESLFIGVWDR 425 (446)
Q Consensus 409 ~~---~spdg~~l~~~~~D~ 425 (446)
+- +..++..++++-.-|
T Consensus 178 vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCC
Confidence 54 344555555554333
No 399
>PHA03098 kelch-like protein; Provisional
Probab=96.54 E-value=0.2 Score=50.90 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=91.4
Q ss_pred EEEeCCcEEEEeccCC------cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC-----CcEEEE
Q 013282 194 TLAVKDKLLVAGGFQG------ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDF 262 (446)
Q Consensus 194 ~l~~~~~~l~tg~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d-----g~v~iw 262 (446)
++..++..++.||.++ .+..||..+......... ........++. -++ .+++.|+.+ ..+..|
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~R~~~~~~~----~~~-~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-IYPRKNPGVTV----FNN-RIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-CcccccceEEE----ECC-EEEEEeCCCCCEecceEEEE
Confidence 4445888888888754 466777765543211110 10111111121 233 366777654 347778
Q ss_pred ecCcceeeEeee--CCCCeeEEEECCCCCEEEEEecC------CcEEEEECCCCceEE--EecCCCCceeEEEECCCCCE
Q 013282 263 DMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTIA--SLCGHLDFSFASAWHPNGVT 332 (446)
Q Consensus 263 d~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~p~~~~ 332 (446)
|+.+.+....-. .+..-.+++ .-+++..+.||.. ..+..||+.+++-.. .+....... +++ ..++.+
T Consensus 364 d~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~i 440 (534)
T PHA03098 364 KPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKI 440 (534)
T ss_pred cCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEE
Confidence 887655433222 121111222 2356666777632 457889987654221 111111111 122 235677
Q ss_pred EEEEeCCC--------cEEEEEccCCCc--ceEEEecCCCceEEEEEccCCCEEEEEeCC-----CeEEEEEcCCCe
Q 013282 333 FATGNQDK--------TCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSGY 394 (446)
Q Consensus 333 l~sgs~d~--------~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d-----g~i~iwd~~~~~ 394 (446)
++.|+.+. .+.+||..+ .+ .+..+.........+.+ +++.++.|+.+ +.|.+||+.+..
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVT-NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCC-CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 77776532 378888854 22 11111111111122222 66766777654 468888887753
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.47 E-value=0.41 Score=47.21 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=89.3
Q ss_pred ceeeEEEEeCCCCCeEEEEEe--CCCcEEEEecCcceeeEeeeCCCCeeEEEECCC----CCEEEEEecCCcEEEEECC-
Q 013282 234 ITNAVEIYGSPSGAVHFTASN--NDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPD----GKLLIIVGDNPDGLLVDSM- 306 (446)
Q Consensus 234 ~v~~i~~~~s~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~~d~~i~i~d~~- 306 (446)
++..++| .+|+.++++.- ..|.++.=| .+.+..|. .|..+.|.|- -..|++..-...|.+|-+.
T Consensus 21 PvhGlaW---TDGkqVvLT~L~l~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 21 PVHGLAW---TDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred cccceEe---cCCCEEEEEeeeeeCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3455555 56665555541 223322222 23344444 3888999983 3356666667789999975
Q ss_pred ----CCceEEEecCC---CCc--eeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEE
Q 013282 307 ----TGKTIASLCGH---LDF--SFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 377 (446)
Q Consensus 307 ----~~~~~~~~~~~---~~~--v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 377 (446)
+++.+..-..+ .-+ -..+.|||....|+.-.....-.+++++.....+..-....+-|.|.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 23333322211 111 245789999888887766655566777654444444334578899999999999887
Q ss_pred EEeCCC-eEEEEEcC
Q 013282 378 TAEPAD-FVHVYDVK 391 (446)
Q Consensus 378 ~~~~dg-~i~iwd~~ 391 (446)
+|-... .-+|||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 665432 46788844
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.46 E-value=0.14 Score=44.37 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=79.7
Q ss_pred CCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEe--cCcceee-----EeeeC-----
Q 013282 208 QGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFD--MGKYQLS-----KHFRF----- 275 (446)
Q Consensus 208 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd--~~~~~~~-----~~~~~----- 275 (446)
.|.++.|-+...- ......-.+.+.++| +.+.+.+.++-+.+-+|..|| ..+|... ..++.
T Consensus 138 ~g~Ly~~~~~h~v-----~~i~~~v~IsNgl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e 210 (310)
T KOG4499|consen 138 GGELYSWLAGHQV-----ELIWNCVGISNGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE 210 (310)
T ss_pred ccEEEEeccCCCc-----eeeehhccCCccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC
Confidence 3666776654331 222344456677776 777777777788889998887 6665432 22221
Q ss_pred CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECC
Q 013282 276 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHP 328 (446)
Q Consensus 276 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p 328 (446)
+-..-.+++..+|++.+++-..++|..+|+.+|+.+..++-....|+++||--
T Consensus 211 ~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 211 SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 11123456667889888888999999999999999999998899999999964
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.32 Score=43.83 Aligned_cols=146 Identities=13% Similarity=0.206 Sum_probs=98.9
Q ss_pred CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEec--CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013282 276 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSES 353 (446)
Q Consensus 276 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~ 353 (446)
...+.++.|+|+.+.|++......-.++=...|+.+.++. +.. ...++.+..+|+++++--.++++.++.+......
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 3459999999999999998888887787777899998875 322 3356888888888888888999988887543221
Q ss_pred eE----EE-----ecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee---EeEeeccc-------cCeEEEEEcCC
Q 013282 354 VA----VL-----KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE---KEQEIDFF-------GEISGISFSPD 414 (446)
Q Consensus 354 ~~----~~-----~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-------~~v~~~~~spd 414 (446)
+. .+ .......-.++|.|..+.|..+-.-.-+.||.+..+.. ......+. ..|+++.|.+.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 11 11 11245678899999988888887777777777654321 11111111 24788888875
Q ss_pred CCcEEEEE
Q 013282 415 TESLFIGV 422 (446)
Q Consensus 415 g~~l~~~~ 422 (446)
...|++=|
T Consensus 244 ~~~LLVLS 251 (316)
T COG3204 244 TNSLLVLS 251 (316)
T ss_pred CCcEEEEe
Confidence 55444433
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=0.012 Score=50.53 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=70.9
Q ss_pred EEEEEeCCCcEEEEecCcc-eeeEeee-CCCCeeEEEE-CCCCCEEEEEecCCcEEEEECCCCceEEEecCCC-CceeEE
Q 013282 249 HFTASNNDCGVRDFDMGKY-QLSKHFR-FPWPVNHSSQ-SPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHL-DFSFAS 324 (446)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~~-sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~ 324 (446)
-+++|+.+|.|++|..... .....+. ...+|.++.- -.++.+..+++.+|.|+.|++..++.+.....|. .++...
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 5899999999999988632 1111111 2223333332 2255678889999999999999888888777777 566666
Q ss_pred EECCCCCEEEEE--eCCCcEEEEEccC
Q 013282 325 AWHPNGVTFATG--NQDKTCRIWDLRN 349 (446)
Q Consensus 325 ~~~p~~~~l~sg--s~d~~v~iwd~~~ 349 (446)
..+..+..++++ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 666677778777 7888888888843
No 404
>PRK10115 protease 2; Provisional
Probab=96.32 E-value=1.7 Score=45.46 Aligned_cols=182 Identities=11% Similarity=-0.048 Sum_probs=92.7
Q ss_pred eCCCCCeEEEEEeCCC----cEEEEecCcceeeEeeeCCCCeeEEEECCCCCEEEEEecC------CcEEEEECCCC--c
Q 013282 242 GSPSGAVHFTASNNDC----GVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLLIIVGDN------PDGLLVDSMTG--K 309 (446)
Q Consensus 242 ~s~~~~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~~~~--~ 309 (446)
++|+|+.++++...+| .|++.|+.++..+...-.... ..++|++|++.|+.+..+ ..|+.+++.++ +
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~ 212 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQ 212 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhH
Confidence 3899886555554444 488889988764322211111 469999999877666432 46888888887 3
Q ss_pred eEEEecCCCCcee-EEEECCCCCEEEEEeC---CCcEEEEEccCC-CcceEEEecCCCceEEEEEccCCCEEEEEeC---
Q 013282 310 TIASLCGHLDFSF-ASAWHPNGVTFATGNQ---DKTCRIWDLRNL-SESVAVLKGNLGAIRSIRYTSDGRYMATAEP--- 381 (446)
Q Consensus 310 ~~~~~~~~~~~v~-~~~~~p~~~~l~sgs~---d~~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~--- 381 (446)
....+........ .+..+.++++++..+. ++.+.+++.... +.....+....+....+. +..+.+++....
T Consensus 213 d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~ 291 (686)
T PRK10115 213 DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGK 291 (686)
T ss_pred CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCC
Confidence 3444443333333 2333437877665543 457888885332 222222222222222222 222333332222
Q ss_pred CCeEEEEEcCCCeeEeEeecc-c-cCeEEEEEcCCCCcEEEEEecCCc
Q 013282 382 ADFVHVYDVKSGYEKEQEIDF-F-GEISGISFSPDTESLFIGVWDRTY 427 (446)
Q Consensus 382 dg~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~spdg~~l~~~~~D~~~ 427 (446)
...|...++........+..+ . ..|..+.+. +++|+....++..
T Consensus 292 ~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~ 337 (686)
T PRK10115 292 NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGL 337 (686)
T ss_pred CceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCE
Confidence 123444455421222334444 2 357777776 4455554443333
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.26 E-value=0.47 Score=48.40 Aligned_cols=190 Identities=18% Similarity=0.138 Sum_probs=98.3
Q ss_pred EEeCCcEEEEeccC-C-----cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCc-----EEEEe
Q 013282 195 LAVKDKLLVAGGFQ-G-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCG-----VRDFD 263 (446)
Q Consensus 195 l~~~~~~l~tg~~d-g-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~-----v~iwd 263 (446)
...++...++||.+ | ++..||..++....... +........... -+| .+.++|+.||. |-.||
T Consensus 329 ~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~-M~~~R~~~~v~~----l~g-~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 329 AVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP-MNTKRSDFGVAV----LDG-KLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred EEECCEEEEEccccCCCcccceEEEecCCCCceeccCC-ccCccccceeEE----ECC-EEEEEeccccccccccEEEec
Confidence 33488999999999 3 45567776665322111 111111111111 234 37888888865 66677
Q ss_pred cCcceeeEeeeCCCCeeEEEE-CCCCCEEEEEecC------CcEEEEECCCCce--EEEecCCCCceeEEEECCCCCEEE
Q 013282 264 MGKYQLSKHFRFPWPVNHSSQ-SPDGKLLIIVGDN------PDGLLVDSMTGKT--IASLCGHLDFSFASAWHPNGVTFA 334 (446)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~d------~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~ 334 (446)
..+.+....-....+...... .-+|...++||.+ .++..||..+++- +..+..-........+ ++.+.+
T Consensus 403 p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYv 480 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYV 480 (571)
T ss_pred CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEE
Confidence 766543332222222222222 2267777888744 3567888876642 2233222222222222 678888
Q ss_pred EEeCCCc-----EEEEEccCCC-cceEEEecCCCceEEEEEccCCCEEEEEeCCC-----eEEEEEcCCCe
Q 013282 335 TGNQDKT-----CRIWDLRNLS-ESVAVLKGNLGAIRSIRYTSDGRYMATAEPAD-----FVHVYDVKSGY 394 (446)
Q Consensus 335 sgs~d~~-----v~iwd~~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg-----~i~iwd~~~~~ 394 (446)
.|+.|+. |..||..... ..+..+......+..+. -+++..++|+.+| +|-.||..+.+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 8888763 7778885411 12222222222222222 2466777777765 47777776653
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.04 E-value=1.1 Score=40.35 Aligned_cols=178 Identities=16% Similarity=0.133 Sum_probs=108.0
Q ss_pred EEEEe--CCcEEEEeccCC--cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcce
Q 013282 193 STLAV--KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQ 268 (446)
Q Consensus 193 ~~l~~--~~~~l~tg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~ 268 (446)
-.+.+ ++.++-+.|.-| .|+.+++.++........ ...-.-..+.+. +..+..-.-.++...+||..+.+
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRYFGEGITIL----GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEEE----TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--CccccceeEEEE----CCEEEEEEecCCeEEEEccccce
Confidence 34555 667777888777 688889888765432222 222233445542 23355556688999999999999
Q ss_pred eeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCC-----CCceeEEEECCCCCEEEEEeCCCcEE
Q 013282 269 LSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH-----LDFSFASAWHPNGVTFATGNQDKTCR 343 (446)
Q Consensus 269 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~l~sgs~d~~v~ 343 (446)
.+..+..+..=..++ .+++.|+.......|+++|..+-+.+..+... -..++.+.|. +|...|=.=....|.
T Consensus 122 ~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 999998666556666 56777887777889999999888777766532 1345566665 555444444455677
Q ss_pred EEEccCCCcceEEEec---------------CCCceEEEEEccCCCEEEEEe
Q 013282 344 IWDLRNLSESVAVLKG---------------NLGAIRSIRYTSDGRYMATAE 380 (446)
Q Consensus 344 iwd~~~~~~~~~~~~~---------------~~~~v~~l~~s~dg~~l~~~~ 380 (446)
..|..+ +..+..+.. ...-.+.|||.|....|...+
T Consensus 199 ~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 777744 555554421 134588999988776554443
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.03 E-value=0.027 Score=35.83 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=29.6
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCee
Q 013282 361 LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYE 395 (446)
Q Consensus 361 ~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~ 395 (446)
...|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346899999999999999999999999998 4543
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.99 E-value=0.38 Score=48.81 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=70.9
Q ss_pred CCCCCeEEEEEeCCCcEEEEecCcceeeEeee--CCCCeeEEEEC--CCCCEEEEEecCCcEEEEECC-----C----Cc
Q 013282 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFR--FPWPVNHSSQS--PDGKLLIIVGDNPDGLLVDSM-----T----GK 309 (446)
Q Consensus 243 s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~s--p~~~~l~~~~~d~~i~i~d~~-----~----~~ 309 (446)
+..++ ..++.+....+.|||...+....... ....|.++.|. |+++.+++.|..+.|.++--. . -.
T Consensus 38 ss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 38 SSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 44444 44555556689999999887655444 47889999985 589999999999999988642 1 12
Q ss_pred eEEEe--cCCC-CceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 310 TIASL--CGHL-DFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 310 ~~~~~--~~~~-~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
++..+ ..|+ .+|.+..|.++|.+++.++ +.+.|+|-
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 33332 2344 5789999999997665443 46888875
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.085 Score=55.47 Aligned_cols=102 Identities=13% Similarity=0.042 Sum_probs=72.9
Q ss_pred CceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCc-ceeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceE
Q 013282 233 AITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGK-YQLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 311 (446)
Q Consensus 233 ~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 311 (446)
.++..+++.|.|.-....+++..|+.|++..+.. -..+..+......+|++|+|.|+.+++|-.+|++.-|-.. ++..
T Consensus 154 k~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik 232 (1405)
T KOG3630|consen 154 KPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIK 232 (1405)
T ss_pred cccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-ccee
Confidence 3455566666887655577788999999988753 3334445667789999999999999999999999888753 3333
Q ss_pred EEecC----CCCceeEEEECCCCCEEEE
Q 013282 312 ASLCG----HLDFSFASAWHPNGVTFAT 335 (446)
Q Consensus 312 ~~~~~----~~~~v~~~~~~p~~~~l~s 335 (446)
..+.+ ....|.+++|-....++++
T Consensus 233 ~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 233 SEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ecccCCCcCCCcceeEEEEecceeEEEE
Confidence 33332 1367899999876666554
No 410
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.36 Score=43.24 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=70.6
Q ss_pred CceeEEEECC-CCCEEEEEeCCCc-EEEEEccCCCcceEEEecCCCc--eEEEEEccCCCEEEEEeCC-----CeEEEEE
Q 013282 319 DFSFASAWHP-NGVTFATGNQDKT-CRIWDLRNLSESVAVLKGNLGA--IRSIRYTSDGRYMATAEPA-----DFVHVYD 389 (446)
Q Consensus 319 ~~v~~~~~~p-~~~~l~sgs~d~~-v~iwd~~~~~~~~~~~~~~~~~--v~~l~~s~dg~~l~~~~~d-----g~i~iwd 389 (446)
.....++|+| ...-++.+-.-|+ ..++|... .....++...++. .-.=.|||||++|+....| |.|-|||
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~-~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNG-AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCC-CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 3445678888 4556777777665 57888854 5545554432221 1123699999999876644 6799999
Q ss_pred cCCCe-eEeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 390 VKSGY-EKEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 390 ~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
.+.+. .+..+..|.-....+.|.+||+.|+++.
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 98653 4455666766788899999999998774
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.58 E-value=0.27 Score=51.21 Aligned_cols=81 Identities=23% Similarity=0.362 Sum_probs=56.7
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECC-C---------Cce--EE-Ee--------cCCCCceeEEEECCC---CCE
Q 013282 277 WPVNHSSQSPDGKLLIIVGDNPDGLLVDSM-T---------GKT--IA-SL--------CGHLDFSFASAWHPN---GVT 332 (446)
Q Consensus 277 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~---------~~~--~~-~~--------~~~~~~v~~~~~~p~---~~~ 332 (446)
..|..+.++|+|.+++..|..| |.|..+. . |+. .. ++ ..+...|..+.|||. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3588899999999999888865 4444442 1 111 11 11 123457889999995 588
Q ss_pred EEEEeCCCcEEEEEccCCCcceEEEe
Q 013282 333 FATGNQDKTCRIWDLRNLSESVAVLK 358 (446)
Q Consensus 333 l~sgs~d~~v~iwd~~~~~~~~~~~~ 358 (446)
|+.-+.|+++|+||+.....+.+++.
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEEE
Confidence 99999999999999977665555543
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.52 E-value=0.51 Score=46.61 Aligned_cols=139 Identities=17% Similarity=0.255 Sum_probs=87.4
Q ss_pred CCeeEEEECCCCCEEEEEe---cCCcEEEEECCCCceEEEecCCCCceeEEEECCC----CCEEEEEeCCCcEEEEEccC
Q 013282 277 WPVNHSSQSPDGKLLIIVG---DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPN----GVTFATGNQDKTCRIWDLRN 349 (446)
Q Consensus 277 ~~v~~~~~sp~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~sgs~d~~v~iwd~~~ 349 (446)
.++..++|. ||+.++-.. .+|.+++=|. +.+..| ..|..++|.|- -..+++....+.|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467888885 677654432 2444444332 234444 35899999994 33566666788999999852
Q ss_pred C----CcceEEEecCC---C--ceEEEEEccCCCEEEEEeCCCeEEEEEcCCC-eeEeEeeccccCeEEEEEcCCCCcEE
Q 013282 350 L----SESVAVLKGNL---G--AIRSIRYTSDGRYMATAEPADFVHVYDVKSG-YEKEQEIDFFGEISGISFSPDTESLF 419 (446)
Q Consensus 350 ~----~~~~~~~~~~~---~--~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~ 419 (446)
. .+.+.....+. - -...+.|+|....|++-.....-.++++... ..++.-....|.|.|.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 1 12222211111 1 1245789999998888776665456666543 23444445778899999999999999
Q ss_pred EEEe
Q 013282 420 IGVW 423 (446)
Q Consensus 420 ~~~~ 423 (446)
++..
T Consensus 172 VAvG 175 (671)
T PF15390_consen 172 VAVG 175 (671)
T ss_pred EEeC
Confidence 8853
No 413
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.43 E-value=2.8 Score=40.68 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=53.9
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEE-EE-EccC----------------CC-EEEEEe
Q 013282 320 FSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRS-IR-YTSD----------------GR-YMATAE 380 (446)
Q Consensus 320 ~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~-l~-~s~d----------------g~-~l~~~~ 380 (446)
.+.+++.+|.+++.|+...=|.|.++|+.. +..++.++|-..+=.. +. ..+. .. +++-+-
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 467899999999888877779999999965 7777777765442111 00 0010 11 234466
Q ss_pred CCCeEEEEEcCCCeeEeEee
Q 013282 381 PADFVHVYDVKSGYEKEQEI 400 (446)
Q Consensus 381 ~dg~i~iwd~~~~~~~~~~~ 400 (446)
.-|.|-||.+++|..+..+.
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCCCCEEEEEE
Confidence 78889999999887665543
No 414
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.37 E-value=2.3 Score=39.30 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=93.6
Q ss_pred cEEEEecCcceeeEeeeCC-------CCeeEEEECCCCC----EEEEEe--cCCcEEEEECCCCceEEEecCC-------
Q 013282 258 GVRDFDMGKYQLSKHFRFP-------WPVNHSSQSPDGK----LLIIVG--DNPDGLLVDSMTGKTIASLCGH------- 317 (446)
Q Consensus 258 ~v~iwd~~~~~~~~~~~~~-------~~v~~~~~sp~~~----~l~~~~--~d~~i~i~d~~~~~~~~~~~~~------- 317 (446)
.|.+||+.+.+.++.+..+ ..++.+.+..... .+|.-+ ..+.|.++|+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778899999988887733 3356677765221 333333 3458999999998766554321
Q ss_pred ------------CCceeEEEECC---CCCEEEEEeCCCcEEEEEcc-----CCC--------cceEEEecCCCceEEEEE
Q 013282 318 ------------LDFSFASAWHP---NGVTFATGNQDKTCRIWDLR-----NLS--------ESVAVLKGNLGAIRSIRY 369 (446)
Q Consensus 318 ------------~~~v~~~~~~p---~~~~l~sgs~d~~v~iwd~~-----~~~--------~~~~~~~~~~~~v~~l~~ 369 (446)
.+.+..++.+| +|++|.-+...+ -++|-+. +.. ..++.+-........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 23366677766 666777666544 2333331 111 112222111235567889
Q ss_pred ccCCCEEEEEeCCCeEEEEEcCCCee---EeEee-c-c-ccCeEEEEEcC--CCCcEEEE
Q 013282 370 TSDGRYMATAEPADFVHVYDVKSGYE---KEQEI-D-F-FGEISGISFSP--DTESLFIG 421 (446)
Q Consensus 370 s~dg~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~-~-~~~v~~~~~sp--dg~~l~~~ 421 (446)
+++|.+.++--..+.|..|+..+... ...+. . . -..+.++.+.+ +|.+.+.+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99998888888899999999887321 11111 1 2 34688999999 77655444
No 415
>PHA03098 kelch-like protein; Provisional
Probab=95.34 E-value=0.38 Score=48.94 Aligned_cols=141 Identities=13% Similarity=0.029 Sum_probs=68.8
Q ss_pred EEEEEeCCC------cEEEEecCcceeeEeeeCC-CCeeEEEECCCCCEEEEEecC-----CcEEEEECCCCceEE--Ee
Q 013282 249 HFTASNNDC------GVRDFDMGKYQLSKHFRFP-WPVNHSSQSPDGKLLIIVGDN-----PDGLLVDSMTGKTIA--SL 314 (446)
Q Consensus 249 ~l~s~s~dg------~v~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~--~~ 314 (446)
+++.|+.++ .+..||+.+.+....-..+ ....+....-+++..+.||.+ ..+..||..+++-.. .+
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l 376 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL 376 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc
Confidence 566665432 5778888776653322211 111111222356777888764 346778877654221 11
Q ss_pred cCCCCceeEEEECCCCCEEEEEeCC------CcEEEEEccCCCc--ceEEEecCCCceEEEEEccCCCEEEEEeCC----
Q 013282 315 CGHLDFSFASAWHPNGVTFATGNQD------KTCRIWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPA---- 382 (446)
Q Consensus 315 ~~~~~~v~~~~~~p~~~~l~sgs~d------~~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d---- 382 (446)
...... .+++ .-++++.+.|+.. ..+..||+.+ .+ .+..+......... ...+++.++.|+.+
T Consensus 377 p~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 377 IFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNT-NKWSKGSPLPISHYGGCA--IYHDGKIYVIGGISYIDN 451 (534)
T ss_pred CcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCC-CeeeecCCCCccccCceE--EEECCEEEEECCccCCCC
Confidence 111111 1222 2256777777742 3578888854 21 11111111111112 22356666666542
Q ss_pred ----CeEEEEEcCCCe
Q 013282 383 ----DFVHVYDVKSGY 394 (446)
Q Consensus 383 ----g~i~iwd~~~~~ 394 (446)
..+.+||..+.+
T Consensus 452 ~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 452 IKVYNIVESYNPVTNK 467 (534)
T ss_pred CcccceEEEecCCCCc
Confidence 238899988764
No 416
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.29 E-value=0.0028 Score=60.23 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=101.5
Q ss_pred CCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEE-EEEecCCcEEEEECCCCce
Q 013282 232 NAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLL-IIVGDNPDGLLVDSMTGKT 310 (446)
Q Consensus 232 ~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~i~d~~~~~~ 310 (446)
...++.+.+.|-+.+.. ++.++.+..|..||- .++.......++....++|..++..+ +.+-..+.+.+||+.+...
T Consensus 32 aalv~pi~~~w~~e~~n-lavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 32 AALVGPIIHRWRPEGHN-LAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hhccccceeeEecCCCc-eehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 34567788888899886 666668888888884 45555566677778888998888766 4456788999999975432
Q ss_pred EEEec--C-CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEE
Q 013282 311 IASLC--G-HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMA 377 (446)
Q Consensus 311 ~~~~~--~-~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 377 (446)
. .+. + |.... +.|++.+..++.|...|.++|++.+. .+.+...-.|...+++++|.+.++.+.
T Consensus 110 q-qLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 110 Q-QLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred H-HHhccCcchHHH--HhhccCCccccccccccceEEEeccc-hhhhhhhcccccceeEEEecccceeee
Confidence 1 222 1 22222 78999999999999999999999976 444444444888899999999876554
No 417
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.95 Score=38.73 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=93.1
Q ss_pred CCcEEEEeccCC--cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeC
Q 013282 198 KDKLLVAGGFQG--ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF 275 (446)
Q Consensus 198 ~~~~l~tg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 275 (446)
+|.++.+.|.-| .|++|++.++.......+- ...-.-..+ ..-|..+-.-.-.+|.-..+|..+.+++..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGi----t~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGI----TKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-Cccccccce----eeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 566777776654 6899999877655433322 111111111 112232333445788899999999999998887
Q ss_pred CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEE----ecCC-CCceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 013282 276 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIAS----LCGH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNL 350 (446)
Q Consensus 276 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~-~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~ 350 (446)
++.=..++ .|++.|+.+....+++.-|.++-....+ +.+. -..++.+.|- +|...|-.=++..|...|..+
T Consensus 130 ~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~s- 205 (262)
T COG3823 130 EGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDS- 205 (262)
T ss_pred CCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCC-
Confidence 66655555 4566677776666777777665433322 2221 1122333332 333333222233333333322
Q ss_pred CcceEE------------EecCCCceEEEEEccCC-CEEEEE
Q 013282 351 SESVAV------------LKGNLGAIRSIRYTSDG-RYMATA 379 (446)
Q Consensus 351 ~~~~~~------------~~~~~~~v~~l~~s~dg-~~l~~~ 379 (446)
++.+.. -..|....+.|++.|++ +++++|
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 332222 22344567889999987 566655
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.17 E-value=0.038 Score=56.55 Aligned_cols=140 Identities=9% Similarity=-0.006 Sum_probs=84.7
Q ss_pred CCcEEEEecC--cceeeEee-----e-CCCCeeEEEECC---CCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeE-
Q 013282 256 DCGVRDFDMG--KYQLSKHF-----R-FPWPVNHSSQSP---DGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFA- 323 (446)
Q Consensus 256 dg~v~iwd~~--~~~~~~~~-----~-~~~~v~~~~~sp---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~- 323 (446)
=|.+.+|++. .|+....+ . ....+.-+.|.| +..++.++-.++.|++....+... ..+.+|..++..
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 3678889875 34332221 1 344456666766 556667777788888877653321 234446544433
Q ss_pred ----------EEECCCCCEEEEEeCCCcEEEEEccCCC----cceEEEecCCC-ceEEEEEccCC---------CEEEEE
Q 013282 324 ----------SAWHPNGVTFATGNQDKTCRIWDLRNLS----ESVAVLKGNLG-AIRSIRYTSDG---------RYMATA 379 (446)
Q Consensus 324 ----------~~~~p~~~~l~sgs~d~~v~iwd~~~~~----~~~~~~~~~~~-~v~~l~~s~dg---------~~l~~~ 379 (446)
-..+|||..||+++.||.++.|.+.-.+ .+++..+.|.+ +-.|.-|+.+- ++++++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec
Confidence 2368999999999999999999875433 35566677763 32233343321 244444
Q ss_pred eC-CCeEEEEEcCCCeeE
Q 013282 380 EP-ADFVHVYDVKSGYEK 396 (446)
Q Consensus 380 ~~-dg~i~iwd~~~~~~~ 396 (446)
+. +.-+++|.....+++
T Consensus 311 td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 311 TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccCCcceeEeeccchhhh
Confidence 43 456899987766655
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=95.17 E-value=1.5 Score=43.81 Aligned_cols=183 Identities=11% Similarity=0.026 Sum_probs=86.6
Q ss_pred eCCcEEEEeccCC-----cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC--CcEEEEecCccee
Q 013282 197 VKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND--CGVRDFDMGKYQL 269 (446)
Q Consensus 197 ~~~~~l~tg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d--g~v~iwd~~~~~~ 269 (446)
.++.++++||.++ ++..|+..++....... ..........+ .-++ .+.+.|+.+ .++..||..+.+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~-m~~~r~~~~~v----~~~~-~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPP-MNSPRLYASGV----PANN-KLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCC-CCchhhcceEE----EECC-EEEEECCcCCCCceEEEECCCCeE
Confidence 3677788888654 45567766543221111 11111111111 1234 366666653 4578888766543
Q ss_pred eEeeeCCCCee-EEEECCCCCEEEEEecCC---cEEEEECCCCceEE--EecCCCCceeEEEECCCCCEEEEEeCCCcEE
Q 013282 270 SKHFRFPWPVN-HSSQSPDGKLLIIVGDNP---DGLLVDSMTGKTIA--SLCGHLDFSFASAWHPNGVTFATGNQDKTCR 343 (446)
Q Consensus 270 ~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~---~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~ 343 (446)
...-..+.+.. .....-+|+..++||.++ .+..||.++.+=.. .+.........++ -++++.+.|+ .+.
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e 418 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAE 418 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceE
Confidence 32222222221 112223677778777543 46778887653221 1111111112222 3566777774 577
Q ss_pred EEEccCCCc--ceEEEecCCCceEEEEEccCCCEEEEEeCC-----CeEEEEEcCCC
Q 013282 344 IWDLRNLSE--SVAVLKGNLGAIRSIRYTSDGRYMATAEPA-----DFVHVYDVKSG 393 (446)
Q Consensus 344 iwd~~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d-----g~i~iwd~~~~ 393 (446)
+||..+ .+ .+..+.........+ .-+|+..+.|+.+ ..|.+||..+.
T Consensus 419 ~ydp~~-~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 419 FYCESS-NTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EecCCC-CcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 888853 22 111121111122222 2356777777654 34677777665
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.80 E-value=1.3 Score=45.03 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=68.3
Q ss_pred CcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecC---------ccee
Q 013282 199 DKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMG---------KYQL 269 (446)
Q Consensus 199 ~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~---------~~~~ 269 (446)
++..++-+...++.|||.......+.. . ....+.|..++|...|+|+. +++.+-...|.++--. +..+
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~-~-f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEE-S-FSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEee-e-ecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 344444444567999999776533322 2 25577899999999999985 5555578888888432 2334
Q ss_pred eEeee----CCCCeeEEEECCCCCEEEEEecCCcEEEEEC
Q 013282 270 SKHFR----FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS 305 (446)
Q Consensus 270 ~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 305 (446)
++.+. .+.+|.+..|.++|.+++.+| ..+.|+|-
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 44443 346899999999998666554 36888774
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.73 E-value=2 Score=44.26 Aligned_cols=147 Identities=10% Similarity=0.059 Sum_probs=92.2
Q ss_pred CcEEEEeccCCcEEEEEcCCCCeee----EEEEe---------------ecCCCceeeEEEEeCCCCCeEEEEEeCCCcE
Q 013282 199 DKLLVAGGFQGELICKHLDRPGVSF----CSRTT---------------YDDNAITNAVEIYGSPSGAVHFTASNNDCGV 259 (446)
Q Consensus 199 ~~~l~tg~~dg~i~vw~~~~~~~~~----~~~~~---------------~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v 259 (446)
.++|+++. .+.|.||++....... +.... ......|+.+.+. .-.+..+|+++..||.|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~-~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVG-DLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEec-ccCCeeEEEEEecCCeE
Confidence 56666654 6789999886543211 10100 0011235566543 22345589999999999
Q ss_pred EEEecCc-------c-------------eeeEeeeCCCCeeEEEEC--CCCCEEEEEecCCcEEEEECCC--CceEE-Ee
Q 013282 260 RDFDMGK-------Y-------------QLSKHFRFPWPVNHSSQS--PDGKLLIIVGDNPDGLLVDSMT--GKTIA-SL 314 (446)
Q Consensus 260 ~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~~i~i~d~~~--~~~~~-~~ 314 (446)
.+|.+++ . ++...+..+..++.++++ ...+++|+++....|.||-... .+... .-
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 9996532 1 012233356678899998 7888889998888888875542 22111 11
Q ss_pred cCCCCceeEEEECCCC---C---EEEEEeCCCcEEEEEc
Q 013282 315 CGHLDFSFASAWHPNG---V---TFATGNQDKTCRIWDL 347 (446)
Q Consensus 315 ~~~~~~v~~~~~~p~~---~---~l~sgs~d~~v~iwd~ 347 (446)
..|...|.+|+|-++. . ++++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1256678899998733 2 7888889999999888
No 422
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.71 E-value=3.2 Score=39.21 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=54.9
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCce---EEEe----cCCCCceeEEEECCC----CCEEEEEeCC-------
Q 013282 278 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT---IASL----CGHLDFSFASAWHPN----GVTFATGNQD------- 339 (446)
Q Consensus 278 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~---~~~~----~~~~~~v~~~~~~p~----~~~l~sgs~d------- 339 (446)
..+.|+|.|+|++++ +...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987665 56699999999 44433 3333 123457789999994 4444444321
Q ss_pred -CcEEEEEccCCC------c-ceEEEec---CCCceEEEEEccCCCEEEEEe
Q 013282 340 -KTCRIWDLRNLS------E-SVAVLKG---NLGAIRSIRYTSDGRYMATAE 380 (446)
Q Consensus 340 -~~v~iwd~~~~~------~-~~~~~~~---~~~~v~~l~~s~dg~~l~~~~ 380 (446)
..|.-|...... + .+..+.. .......|+|.|||.+.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 134444442211 1 1122222 122456799999997555544
No 423
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.63 E-value=5.7 Score=42.19 Aligned_cols=74 Identities=22% Similarity=0.062 Sum_probs=53.1
Q ss_pred CceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEe----e-----------ccc----cCeEEEEEcCCCCcEEEEE
Q 013282 362 GAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE----I-----------DFF----GEISGISFSPDTESLFIGV 422 (446)
Q Consensus 362 ~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~----~-----------~~~----~~v~~~~~spdg~~l~~~~ 422 (446)
+.|.++....-+.+++.+-.||+|.++|-.+.+.+... . +.. ..+..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45777777777889999999999999998776433222 0 001 1234588999999999999
Q ss_pred ecCCcceEEEEec
Q 013282 423 WDRTYGSLLEYGR 435 (446)
Q Consensus 423 ~D~~~~~~l~~~~ 435 (446)
.++.+..++...+
T Consensus 340 ~~~~~~~~~~~~~ 352 (753)
T PF11635_consen 340 EDGKTKKLLYMMR 352 (753)
T ss_pred cCCCceeeEEeec
Confidence 9998885555544
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=1.2 Score=42.66 Aligned_cols=136 Identities=8% Similarity=0.078 Sum_probs=88.0
Q ss_pred CCCcEEEEecCc--ceeeEeee--CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEE----EecCCCCceeEEEE
Q 013282 255 NDCGVRDFDMGK--YQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIA----SLCGHLDFSFASAW 326 (446)
Q Consensus 255 ~dg~v~iwd~~~--~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~v~~~~~ 326 (446)
..|.+.-|-+.. ......+. ..++|.++.||+|.+.+|+--.+.+|.+++....+... +-+..+..|....|
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 335555555432 22333333 56789999999999999999999999999975333222 22233456888899
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEe--CCCeEEEEEcCC
Q 013282 327 HPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAE--PADFVHVYDVKS 392 (446)
Q Consensus 327 ~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--~dg~i~iwd~~~ 392 (446)
+.+ .-+|.-+..| +.+|-+....+.++..+.|...|+--.|+++-+.+.-++ ..+.+.=+-+++
T Consensus 121 ~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 121 TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 876 4566655554 777777555666777777888888888999887544333 333333344443
No 425
>PLN02153 epithiospecifier protein
Probab=94.54 E-value=4.4 Score=38.47 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=53.2
Q ss_pred EEEeCCcEEEEeccC-------CcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC-----CcEEE
Q 013282 194 TLAVKDKLLVAGGFQ-------GELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRD 261 (446)
Q Consensus 194 ~l~~~~~~l~tg~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d-----g~v~i 261 (446)
+...++.+++.||.+ ..+.+||+.+...................... ..-+..+++.|+.+ ..|.+
T Consensus 28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~--~~~~~~iyv~GG~~~~~~~~~v~~ 105 (341)
T PLN02153 28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRM--VAVGTKLYIFGGRDEKREFSDFYS 105 (341)
T ss_pred EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEE--EEECCEEEEECCCCCCCccCcEEE
Confidence 334477888888864 24677777665422111000000000001111 01123366666643 35778
Q ss_pred EecCcceeeEeeeC-----CCC-eeEEEECCCCCEEEEEecC-----------CcEEEEECCCCc
Q 013282 262 FDMGKYQLSKHFRF-----PWP-VNHSSQSPDGKLLIIVGDN-----------PDGLLVDSMTGK 309 (446)
Q Consensus 262 wd~~~~~~~~~~~~-----~~~-v~~~~~sp~~~~l~~~~~d-----------~~i~i~d~~~~~ 309 (446)
||+.+.+-...-.. +.+ ....+..-++++.+.|+.+ ..+.+||+.+.+
T Consensus 106 yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 106 YDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred EECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 89876554321111 111 1222222356666777643 247788887653
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.54 E-value=0.67 Score=44.93 Aligned_cols=134 Identities=17% Similarity=0.145 Sum_probs=88.4
Q ss_pred CCCEE-EEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCC-------EEEEEeCCCcEEEEEccCCCcceEEEe
Q 013282 287 DGKLL-IIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGV-------TFATGNQDKTCRIWDLRNLSESVAVLK 358 (446)
Q Consensus 287 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~-------~l~sgs~d~~v~iwd~~~~~~~~~~~~ 358 (446)
+.+++ ..|+.-..++-.|+.-|+.+.....|..- -+.|.|..+ .-+.|-.+..|.-.|.|..+..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 44554 34556678888999999999998877665 477888432 233455566677778876554333322
Q ss_pred c----CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEe
Q 013282 359 G----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 359 ~----~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 423 (446)
. .....++..-... -++|+|+..|-|++||--.-+....+++....|..+..+.+|++|++.+.
T Consensus 556 sKdY~tKn~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 556 SKDYKTKNKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ehhccccccccccccccC-ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 1 1122333333333 48999999999999995433334445667778999999999999876653
No 427
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=3.8 Score=37.18 Aligned_cols=227 Identities=15% Similarity=0.051 Sum_probs=125.4
Q ss_pred eEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcc---
Q 013282 191 QVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKY--- 267 (446)
Q Consensus 191 ~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~--- 267 (446)
--.++.+.|++...+..+.-+.+.|+..+......-......+....+.+ | |+ ....+..|+.+.+.|+...
T Consensus 130 yaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I--S--Gn-~AYvA~~d~GL~ivDVSnp~sP 204 (370)
T COG5276 130 YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI--S--GN-YAYVAWRDGGLTIVDVSNPHSP 204 (370)
T ss_pred eEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE--e--cC-eEEEEEeCCCeEEEEccCCCCC
Confidence 35666779999999986666778899887755433333333443445555 3 44 4666678999999998653
Q ss_pred eeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecC--CCCceeEEEECCCCCEEEEEeCCCcEEEE
Q 013282 268 QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQDKTCRIW 345 (446)
Q Consensus 268 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~sgs~d~~v~iw 345 (446)
..+........+.++..+++..+++... .-+.+.|..+.+....+.. ...++.-..+.-.+++....-.+.-+.+-
T Consensus 205 vli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~i 282 (370)
T COG5276 205 VLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPII 282 (370)
T ss_pred eEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeE
Confidence 3444455555688888887666655543 3477888776654443321 22222111222356677777667778888
Q ss_pred EccCCCcceEE--EecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEe
Q 013282 346 DLRNLSESVAV--LKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVW 423 (446)
Q Consensus 346 d~~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~ 423 (446)
|+.++..+.-. +......-..+..+ +.++..+..+ ...+-+....+..-...+....+.+.+.+-+.+.+.+.-+
T Consensus 283 disnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 283 DISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred eccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeec
Confidence 88664443211 11111122333332 4455545444 3445554433222222222223444444555666777766
Q ss_pred cCCc
Q 013282 424 DRTY 427 (446)
Q Consensus 424 D~~~ 427 (446)
++..
T Consensus 360 ~~gl 363 (370)
T COG5276 360 NGGL 363 (370)
T ss_pred CCCE
Confidence 6544
No 428
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.35 E-value=4.9 Score=38.21 Aligned_cols=40 Identities=23% Similarity=0.153 Sum_probs=20.1
Q ss_pred cEEEEecCcceeeEee-eCCCCeeEE-EE-CCCCCEEEEEecC
Q 013282 258 GVRDFDMGKYQLSKHF-RFPWPVNHS-SQ-SPDGKLLIIVGDN 297 (446)
Q Consensus 258 ~v~iwd~~~~~~~~~~-~~~~~v~~~-~~-sp~~~~l~~~~~d 297 (446)
.+..||+.+.+-...- ..+...... +. .-++++.++|+.+
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 4777888765543322 122222211 12 2467777887754
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=94.26 E-value=5 Score=37.99 Aligned_cols=148 Identities=11% Similarity=0.033 Sum_probs=80.8
Q ss_pred CCceeeEEEEeCCCCCeEEEEEeCCCcEEEE-ecCcceeeEeee--CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC
Q 013282 232 NAITNAVEIYGSPSGAVHFTASNNDCGVRDF-DMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG 308 (446)
Q Consensus 232 ~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iw-d~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 308 (446)
.+.+..+.+ .|++. ++ ..+..|.+..- +- .++.-.... ....++.+.+.|+++.++++ ..|.+++=....|
T Consensus 172 ~g~~~~i~~--~~~g~-~v-~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRR--SPDGK-YV-AVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEE--CCCCe-EE-EEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence 345566665 77764 34 44455655432 22 222111112 44678899999998876665 4566543233444
Q ss_pred ceEEEecC----CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEec---CCCceEEEEEccCCCEEEEEeC
Q 013282 309 KTIASLCG----HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEP 381 (446)
Q Consensus 309 ~~~~~~~~----~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~s~dg~~l~~~~~ 381 (446)
..-..... ....+.++++.|++..+++| .+|.+.. .. ..++.-..... -......+.|..+++.++ .+.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~-d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SK-DGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eC-CCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 33222221 12357889999988766655 5664443 33 32444333321 123577788877776655 456
Q ss_pred CCeEEEEE
Q 013282 382 ADFVHVYD 389 (446)
Q Consensus 382 dg~i~iwd 389 (446)
.|.|-.|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78777665
No 430
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.20 E-value=0.24 Score=30.59 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=26.6
Q ss_pred CCeeEEEECCCC---CEEEEEecCCcEEEEECCCC
Q 013282 277 WPVNHSSQSPDG---KLLIIVGDNPDGLLVDSMTG 308 (446)
Q Consensus 277 ~~v~~~~~sp~~---~~l~~~~~d~~i~i~d~~~~ 308 (446)
+.|.++.|+|.+ .+|+.+-..+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368999999844 48888888999999999963
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.17 E-value=9 Score=40.56 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=70.5
Q ss_pred EEEEEeCCCcEEEEecCcceeeEeeeCCCCee---------EEEEC----------------CCCCEEEEEecCCcEEEE
Q 013282 249 HFTASNNDCGVRDFDMGKYQLSKHFRFPWPVN---------HSSQS----------------PDGKLLIIVGDNPDGLLV 303 (446)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~---------~~~~s----------------p~~~~l~~~~~d~~i~i~ 303 (446)
.++.++.++.|.-.|..+|+.+..+.....+. .+++. ..+..++.++.|+.++-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 47777788999999999999988887433221 12221 134478888999999999
Q ss_pred ECCCCceEEEecCCCCce-------------eEEEECC--CCCEEEEEeC----------CCcEEEEEccCCCcceEEE
Q 013282 304 DSMTGKTIASLCGHLDFS-------------FASAWHP--NGVTFATGNQ----------DKTCRIWDLRNLSESVAVL 357 (446)
Q Consensus 304 d~~~~~~~~~~~~~~~~v-------------~~~~~~p--~~~~l~sgs~----------d~~v~iwd~~~~~~~~~~~ 357 (446)
|.++|+.+..+.. .+.| ..+.-.| .+..+++|+. +|.|+-+|+++ ++.+-.+
T Consensus 276 DA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T-Gkl~W~~ 352 (764)
T TIGR03074 276 DADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT-GALVWAW 352 (764)
T ss_pred ECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC-CcEeeEE
Confidence 9999998876632 1111 1122223 2445666643 68899999976 6655544
No 432
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.16 E-value=3.6 Score=42.46 Aligned_cols=169 Identities=9% Similarity=0.034 Sum_probs=95.2
Q ss_pred eeeeEEecc-cCeEEEecCCeEEEEecCCCCceE----EEec--CCCCCCCCCCCCCcc-ccCccceEEEEEe----CCc
Q 013282 133 LRNLVWATS-KHDVYLMSHFSVIHWSSLTSSRSQ----VLNV--SGHVAPSEKHPGSLL-EGFTQTQVSTLAV----KDK 200 (446)
Q Consensus 133 ~~~l~~~~~-~~~v~~~~~~~i~~w~~~~~~~~~----~~~~--~g~~~~~~~~~g~~~-~~~~~~~v~~l~~----~~~ 200 (446)
.||=+.+.. ...+|.+..+.|.+|+...-.... .+.+ .....+ ...+... .+ .+..|.-|.+ ...
T Consensus 39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~--~~D~~~s~~p-~PHtIN~i~v~~lg~~E 115 (717)
T PF08728_consen 39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTS--TPDRLISTWP-FPHTINFIKVGDLGGEE 115 (717)
T ss_pred cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccc--cccccccCCC-CCceeeEEEecccCCee
Confidence 444444444 666777778888888863332111 1111 111111 0111111 11 3335666655 678
Q ss_pred EEEEeccCCcEEEEEcCC-------C----Ce-e----eEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEec
Q 013282 201 LLVAGGFQGELICKHLDR-------P----GV-S----FCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDM 264 (446)
Q Consensus 201 ~l~tg~~dg~i~vw~~~~-------~----~~-~----~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~ 264 (446)
.|+.+..||.|.+|.+.+ . .. . ............+..+++. +.....+||++++...|.||-.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh-~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIH-DYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEE-ecCcceEEEEecCCceEEEEEE
Confidence 999999999999997621 0 00 0 0001112234467788874 2344557888888888888855
Q ss_pred Cc--cee--eEeeeCCCCeeEEEECCCC---C---EEEEEecCCcEEEEEC
Q 013282 265 GK--YQL--SKHFRFPWPVNHSSQSPDG---K---LLIIVGDNPDGLLVDS 305 (446)
Q Consensus 265 ~~--~~~--~~~~~~~~~v~~~~~sp~~---~---~l~~~~~d~~i~i~d~ 305 (446)
.. .+. .....+...|-+++|-++. . .+++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 33 121 1123356678888887632 2 6778888999999887
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.08 E-value=1.8 Score=45.16 Aligned_cols=76 Identities=12% Similarity=0.183 Sum_probs=52.7
Q ss_pred CceeEEEECCCCCEEEEEeCCCcEEEEEc-cCCC---------cc--eEEE--------ecCCCceEEEEEccCC---CE
Q 013282 319 DFSFASAWHPNGVTFATGNQDKTCRIWDL-RNLS---------ES--VAVL--------KGNLGAIRSIRYTSDG---RY 375 (446)
Q Consensus 319 ~~v~~~~~~p~~~~l~sgs~d~~v~iwd~-~~~~---------~~--~~~~--------~~~~~~v~~l~~s~dg---~~ 375 (446)
-.|..+.++|+|+++|..|..|. .|-.+ +..+ .. .+++ ..+...|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 36888999999999998888664 44433 2111 11 1111 1234578899999974 78
Q ss_pred EEEEeCCCeEEEEEcCCCee
Q 013282 376 MATAEPADFVHVYDVKSGYE 395 (446)
Q Consensus 376 l~~~~~dg~i~iwd~~~~~~ 395 (446)
|+.-..|+.+|+||+.....
T Consensus 164 l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEEecCCEEEEEecCCCCC
Confidence 99999999999999986543
No 434
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.84 E-value=6.5 Score=37.78 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=73.5
Q ss_pred EEEEEe--CCcEEEEec-----------cCC-cEEEEEcCC-CCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC
Q 013282 192 VSTLAV--KDKLLVAGG-----------FQG-ELICKHLDR-PGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND 256 (446)
Q Consensus 192 v~~l~~--~~~~l~tg~-----------~dg-~i~vw~~~~-~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d 256 (446)
...|++ +|+++|+-. ..+ .|.+++-.. .+..-....+.........+.+ .++| ++++ +..
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~--~~~G--lyV~-~~~ 90 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAV--AVGG--VYVA-TPP 90 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeE--ecCC--EEEe-CCC
Confidence 446666 667666642 223 666665432 2222222333333334566666 6776 4444 343
Q ss_pred CcEEEEecCc-----cee---eEeeeC-----CCCeeEEEECCCCCEEEEEecC-------------------CcEEEEE
Q 013282 257 CGVRDFDMGK-----YQL---SKHFRF-----PWPVNHSSQSPDGKLLIIVGDN-------------------PDGLLVD 304 (446)
Q Consensus 257 g~v~iwd~~~-----~~~---~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d-------------------~~i~i~d 304 (446)
...++.+... ++. +..+.. ....+.++|.|||.+.++.+.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333334421 121 112221 2337789999999877655421 4455666
Q ss_pred CCCCceEEEecCCCCceeEEEECCCCCEEEEEeCC
Q 013282 305 SMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 339 (446)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d 339 (446)
..+++....-.++ .....++|+|+|+++++-+.+
T Consensus 171 pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 6554433222333 334689999999988775533
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=93.54 E-value=2.5 Score=42.27 Aligned_cols=165 Identities=12% Similarity=-0.049 Sum_probs=78.7
Q ss_pred eEEEEEeCCC-----cEEEEecCcceeeEeee--CCCCeeEEEECCCCCEEEEEecC--CcEEEEECCCCce--EEEecC
Q 013282 248 VHFTASNNDC-----GVRDFDMGKYQLSKHFR--FPWPVNHSSQSPDGKLLIIVGDN--PDGLLVDSMTGKT--IASLCG 316 (446)
Q Consensus 248 ~~l~s~s~dg-----~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d--~~i~i~d~~~~~~--~~~~~~ 316 (446)
.++++|+.++ ++..||..+.+....-. .+..-.+++ .-++...++||.+ ..+..||..+++- +..+..
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 3566666442 46678887765433222 111111222 2366777777753 4577888765532 222221
Q ss_pred CCCceeEEEECCCCCEEEEEeCCC---cEEEEEccCCCcceEEEec---CCCceEEEEEccCCCEEEEEeCCCeEEEEEc
Q 013282 317 HLDFSFASAWHPNGVTFATGNQDK---TCRIWDLRNLSESVAVLKG---NLGAIRSIRYTSDGRYMATAEPADFVHVYDV 390 (446)
Q Consensus 317 ~~~~v~~~~~~p~~~~l~sgs~d~---~v~iwd~~~~~~~~~~~~~---~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~ 390 (446)
.......++ -+|++.+.|+.++ ++..||.+. .. -..... .......+ .-+|+..+.| |.+.+||.
T Consensus 352 ~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~-~~-W~~~~~m~~~r~~~~~~--~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 352 PRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNH-DQ-WQFGPSTYYPHYKSCAL--VFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCC-CE-EEeCCCCCCccccceEE--EECCEEEEEC---CceEEecC
Confidence 111112222 2678888887653 477888753 21 111111 11111122 2356655655 35778998
Q ss_pred CCCeeEeE--eeccccCeEEEEEcCCCCcEEEEEec
Q 013282 391 KSGYEKEQ--EIDFFGEISGISFSPDTESLFIGVWD 424 (446)
Q Consensus 391 ~~~~~~~~--~~~~~~~v~~~~~spdg~~l~~~~~D 424 (446)
.+.+-... ........ +++ .-+|+..++|+.+
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFY 456 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcC
Confidence 77643221 11111122 222 2356666777665
No 436
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.52 E-value=5.7 Score=36.08 Aligned_cols=185 Identities=11% Similarity=0.082 Sum_probs=112.1
Q ss_pred CCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeC--CCCeeEEEECCCCCEEEEEecCCcEEEEECCCC
Q 013282 231 DNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRF--PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTG 308 (446)
Q Consensus 231 ~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 308 (446)
....+.++.+ +|+.+.++++. +...-.++=-..|+.++++.. -.....+.+..++.++++--.+..++++-+...
T Consensus 84 ~~~nvS~LTy--np~~rtLFav~-n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 84 ETANVSSLTY--NPDTRTLFAVT-NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccceee--CCCcceEEEec-CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3344777777 99988655555 444444554557888888772 223456677767777676667888888877644
Q ss_pred ceEEE-------ec--CC-CCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcce--EEEecC-------CCceEEEEE
Q 013282 309 KTIAS-------LC--GH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV--AVLKGN-------LGAIRSIRY 369 (446)
Q Consensus 309 ~~~~~-------~~--~~-~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~--~~~~~~-------~~~v~~l~~ 369 (446)
..+.. +. .+ ......++|.|..+.|..+-.-.-++||.+......+ .....+ ...|+++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 32221 11 12 4566789999988888888777777777764322111 111111 135778888
Q ss_pred ccC-CCEEEEEeCCCeEEEEEcCCCeeEeEeeccc---------cCeEEEEEcCCCCcEE
Q 013282 370 TSD-GRYMATAEPADFVHVYDVKSGYEKEQEIDFF---------GEISGISFSPDTESLF 419 (446)
Q Consensus 370 s~d-g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~spdg~~l~ 419 (446)
.+. +..|+-+..++.+.-.|.. |..+..+.-+. ...-+++..++|..-+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 864 4566666677777777755 43333333221 1345788888876433
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=2.5 Score=40.61 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=73.3
Q ss_pred CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCc---ceEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 013282 317 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 317 ~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~ 393 (446)
..++|.++.|+||.+.+|.--.+++|.+++...... ..++.+..+..|....|+.+ +-+|..+..| +-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 467999999999999999999999999999832111 12223333456888999876 6677777666 777765443
Q ss_pred -eeEeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 394 -YEKEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 394 -~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
+.++....|...|+-..|.|+.+.++.++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 23344455777888899999887655443
No 438
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.19 E-value=3.2 Score=37.06 Aligned_cols=144 Identities=18% Similarity=0.216 Sum_probs=82.0
Q ss_pred EEEEecCcceeeEeee-CCCCeeEEEECCCCCEEEEEec---CCcEEEEECCC--Cce-EE----EecCCCCceeEEEEC
Q 013282 259 VRDFDMGKYQLSKHFR-FPWPVNHSSQSPDGKLLIIVGD---NPDGLLVDSMT--GKT-IA----SLCGHLDFSFASAWH 327 (446)
Q Consensus 259 v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~~--~~~-~~----~~~~~~~~v~~~~~~ 327 (446)
-.+||+.+++...... ...-+..-.+-|+|++|.+|+. ...+++++..+ +.+ .. .+. ...+-.++..-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 3478988876533222 2222344457789999999875 24577887654 111 11 111 22344455667
Q ss_pred CCCCEEEEEeCCC-cEEEEEccCCCc-ceEE--Eec-----CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeE
Q 013282 328 PNGVTFATGNQDK-TCRIWDLRNLSE-SVAV--LKG-----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQ 398 (446)
Q Consensus 328 p~~~~l~sgs~d~-~v~iwd~~~~~~-~~~~--~~~-----~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~ 398 (446)
|||+.|+.|+... +..+|.-+.... .... +.. ...---.+...|+|+.++.+..+. .|||..+.+.+..
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence 8999999988764 456665532111 1111 110 111222466689999988887654 5679888866666
Q ss_pred eeccccC
Q 013282 399 EIDFFGE 405 (446)
Q Consensus 399 ~~~~~~~ 405 (446)
+....+.
T Consensus 205 lP~lPg~ 211 (243)
T PF07250_consen 205 LPDLPGG 211 (243)
T ss_pred CCCCCCC
Confidence 6654443
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.10 E-value=0.013 Score=55.86 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=97.1
Q ss_pred EEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEE-EeCCCcEEEEEccCCCcceEEEe-
Q 013282 281 HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT-GNQDKTCRIWDLRNLSESVAVLK- 358 (446)
Q Consensus 281 ~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s-gs~d~~v~iwd~~~~~~~~~~~~- 358 (446)
...|-|.+.-+++++-+..+..|| +.++....+. .++....++|.-++..++. +-..+.+.+||+.. +-.+.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~--eytqqLE~ 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS--EYTQQLES 114 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhh--hhHHHHhc
Confidence 456778777788888888888888 3444444333 3456677888887766544 45578999999954 2222222
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEEecCC
Q 013282 359 GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 359 ~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
+....-.-+.|++.+..++.+...|.+.|++..+.+.....-.|...++++++.+.+. .+.++.|..
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 1111222378999999999999999999999888766655555888999999999765 444544443
No 440
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.02 E-value=14 Score=39.21 Aligned_cols=221 Identities=11% Similarity=0.044 Sum_probs=115.3
Q ss_pred EEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCe---EEEEEeCCCcEEEEe-cCcc
Q 013282 192 VSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAV---HFTASNNDCGVRDFD-MGKY 267 (446)
Q Consensus 192 v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~---~l~s~s~dg~v~iwd-~~~~ 267 (446)
|.....+...++.++.++.+....+...+.. ......-...|.|+++..-+++.+ +++.|.++..+.+.- +...
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~--e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~ 569 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGGLR--EVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL 569 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeecccee--eeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc
Confidence 4344446667777777777777777655521 122223345688888832223444 888998887766553 3344
Q ss_pred eeeEeee-----CCCCeeEEEECCCCCEEEEEecCCcEEEE--ECCCCceEEEecC--CCCceeEEEECCCCCEEEEEeC
Q 013282 268 QLSKHFR-----FPWPVNHSSQSPDGKLLIIVGDNPDGLLV--DSMTGKTIASLCG--HLDFSFASAWHPNGVTFATGNQ 338 (446)
Q Consensus 268 ~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~sgs~ 338 (446)
..+.... -+..|--..+-.|..+|+++..||.+.-+ |..+|+.--.-+. ...++.=-.|+..++.-+.+..
T Consensus 570 ~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s 649 (1096)
T KOG1897|consen 570 ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS 649 (1096)
T ss_pred ceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC
Confidence 4333332 34456566666678899999999998655 4455543222211 2334444456665555555555
Q ss_pred CCcEEEEEccCCCcceE-EEecCCCceEE-EEEccC--CCEEEEEeCCCeEEEEEcCCCe--eEeEeeccccCeEEEEEc
Q 013282 339 DKTCRIWDLRNLSESVA-VLKGNLGAIRS-IRYTSD--GRYMATAEPADFVHVYDVKSGY--EKEQEIDFFGEISGISFS 412 (446)
Q Consensus 339 d~~v~iwd~~~~~~~~~-~~~~~~~~v~~-l~~s~d--g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s 412 (446)
|+-..+|--+ ++.+. .+.- ..+.. +.|+.+ ...|+++.. +.+++.-+..-. .+++ ......+..+++.
T Consensus 650 drP~viY~~n--~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irt-vpl~~~prrI~~q 723 (1096)
T KOG1897|consen 650 DRPTVIYSSN--GKLVYSPLSL--KEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRT-VPLGESPRRICYQ 723 (1096)
T ss_pred CCCEEEEecC--CcEEEeccch--HHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceee-ecCCCChhheEec
Confidence 6666666653 22221 1111 11111 122222 234555543 346666544321 1222 3344556777787
Q ss_pred CCCCcEEE
Q 013282 413 PDTESLFI 420 (446)
Q Consensus 413 pdg~~l~~ 420 (446)
+....+++
T Consensus 724 ~~sl~~~v 731 (1096)
T KOG1897|consen 724 ESSLTFGV 731 (1096)
T ss_pred ccceEEEE
Confidence 74444333
No 441
>PLN02193 nitrile-specifier protein
Probab=92.79 E-value=11 Score=37.51 Aligned_cols=188 Identities=12% Similarity=0.047 Sum_probs=89.0
Q ss_pred EEeCCcEEEEeccC-------CcEEEEEcCCCCeeeEEEEeec-CCC-ceeeEEEEeCCCCCeEEEEEeCC-----CcEE
Q 013282 195 LAVKDKLLVAGGFQ-------GELICKHLDRPGVSFCSRTTYD-DNA-ITNAVEIYGSPSGAVHFTASNND-----CGVR 260 (446)
Q Consensus 195 l~~~~~~l~tg~~d-------g~i~vw~~~~~~~~~~~~~~~~-~~~-~v~~i~~~~s~~~~~~l~s~s~d-----g~v~ 260 (446)
...++.+++.|+.+ ..+.+||+.+..... ..... ... ......+. .-+ ..+++.|+.+ ..+.
T Consensus 172 ~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~--~~~~g~~P~~~~~~~~~v-~~~-~~lYvfGG~~~~~~~ndv~ 247 (470)
T PLN02193 172 AQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI--SPATGDVPHLSCLGVRMV-SIG-STLYVFGGRDASRQYNGFY 247 (470)
T ss_pred EEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe--CCCCCCCCCCcccceEEE-EEC-CEEEEECCCCCCCCCccEE
Confidence 33477788888863 236677776653221 11000 000 00111110 112 3356666554 3588
Q ss_pred EEecCcceeeEeeeC---CCC--eeEEEECCCCCEEEEEecC-----CcEEEEECCCCceEEEecC------CCCceeEE
Q 013282 261 DFDMGKYQLSKHFRF---PWP--VNHSSQSPDGKLLIIVGDN-----PDGLLVDSMTGKTIASLCG------HLDFSFAS 324 (446)
Q Consensus 261 iwd~~~~~~~~~~~~---~~~--v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~------~~~~v~~~ 324 (446)
.||+.+.+-...-.. +.+ -.+++. -++++.+.|+.+ ..+..||+.+.+-. .+.. .......+
T Consensus 248 ~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~ 325 (470)
T PLN02193 248 SFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLE 325 (470)
T ss_pred EEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEE
Confidence 889877654332111 111 112222 245666677654 34677887765422 1110 11111122
Q ss_pred EECCCCCEEEEEeCC----CcEEEEEccCCCcceEEEec------CCCceEEEEEccCCCEEEEEeCC------------
Q 013282 325 AWHPNGVTFATGNQD----KTCRIWDLRNLSESVAVLKG------NLGAIRSIRYTSDGRYMATAEPA------------ 382 (446)
Q Consensus 325 ~~~p~~~~l~sgs~d----~~v~iwd~~~~~~~~~~~~~------~~~~v~~l~~s~dg~~l~~~~~d------------ 382 (446)
.+ ++++++.|+.+ ..+.+||+.+ .+ -..+.. ......++ .-++++++.|+..
T Consensus 326 ~~--~gkiyviGG~~g~~~~dv~~yD~~t-~~-W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~ 399 (470)
T PLN02193 326 VV--QGKVWVVYGFNGCEVDDVHYYDPVQ-DK-WTQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQ 399 (470)
T ss_pred EE--CCcEEEEECCCCCccCceEEEECCC-CE-EEEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccc
Confidence 22 56777777765 4588999854 22 222221 11112222 2356666777643
Q ss_pred --CeEEEEEcCCCe
Q 013282 383 --DFVHVYDVKSGY 394 (446)
Q Consensus 383 --g~i~iwd~~~~~ 394 (446)
+.+.+||+.+.+
T Consensus 400 ~~ndv~~~D~~t~~ 413 (470)
T PLN02193 400 LTDGTFALDTETLQ 413 (470)
T ss_pred eeccEEEEEcCcCE
Confidence 248899988764
No 442
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.75 E-value=8.9 Score=36.17 Aligned_cols=142 Identities=19% Similarity=0.155 Sum_probs=85.0
Q ss_pred CCeeEEEECCCCCEEEEEecCCc------EEEEECCC--C--ceEE-----EecCCCC--------ceeEEEECCCCCEE
Q 013282 277 WPVNHSSQSPDGKLLIIVGDNPD------GLLVDSMT--G--KTIA-----SLCGHLD--------FSFASAWHPNGVTF 333 (446)
Q Consensus 277 ~~v~~~~~sp~~~~l~~~~~d~~------i~i~d~~~--~--~~~~-----~~~~~~~--------~v~~~~~~p~~~~l 333 (446)
+.++.+.+.|++..+++.++++. ++.+.+.. + ..+. .+....+ -..+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45778888876667777787777 66666543 1 1111 1221111 33478887788888
Q ss_pred EEEeCC------CcEEEEEccCCCcceEEEe---------------cCCCceEEEEEccCCCEEEEEeC-----CC----
Q 013282 334 ATGNQD------KTCRIWDLRNLSESVAVLK---------------GNLGAIRSIRYTSDGRYMATAEP-----AD---- 383 (446)
Q Consensus 334 ~sgs~d------~~v~iwd~~~~~~~~~~~~---------------~~~~~v~~l~~s~dg~~l~~~~~-----dg---- 383 (446)
++.-.+ ..|+.++.. +.....+. ......-+|+++|+|+.|+++.. |+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 877667 778888863 44333331 12346889999999996665543 22
Q ss_pred -------eEEEEEcCC-CeeEeEee----c-----cccCeEEEEEcCCCCcEEE
Q 013282 384 -------FVHVYDVKS-GYEKEQEI----D-----FFGEISGISFSPDTESLFI 420 (446)
Q Consensus 384 -------~i~iwd~~~-~~~~~~~~----~-----~~~~v~~~~~spdg~~l~~ 420 (446)
.|..||..+ +....++. . ....|+.+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234455554 32222221 1 2456889999999987764
No 443
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.45 E-value=0.99 Score=38.16 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=25.7
Q ss_pred CceEEEEEccCC------CEEEEEeCCCeEEEEEcCC
Q 013282 362 GAIRSIRYTSDG------RYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 362 ~~v~~l~~s~dg------~~l~~~~~dg~i~iwd~~~ 392 (446)
..+.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999965 3788899999999998663
No 444
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.28 E-value=2.2 Score=41.34 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=56.7
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEEC----CCC----------------C-EE
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWH----PNG----------------V-TF 333 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~----p~~----------------~-~l 333 (446)
....+.++..+|.+++.++...-|.|.|+|+.++..++.++|-.+.= +.|- +.. . ++
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEE
Confidence 34568899999999988888888999999999999998888755431 1221 111 1 23
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEe
Q 013282 334 ATGNQDKTCRIWDLRNLSESVAVLK 358 (446)
Q Consensus 334 ~sgs~d~~v~iwd~~~~~~~~~~~~ 358 (446)
+-+-.-|.|.||.++. +..+..+.
T Consensus 384 IyaprRg~lEvW~~~~-g~Rv~a~~ 407 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQ-GPRVAAFN 407 (415)
T ss_pred EEeccCCeEEEEecCC-CCEEEEEE
Confidence 3455678899999976 55454443
No 445
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.06 E-value=11 Score=35.64 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=42.8
Q ss_pred eEEEecCCCceEEEEEcc-------CCCEEEEEeCCCeEEEEEcCCCeeEe---Eeec-cccCeEEEEEcCCCCcEEEEE
Q 013282 354 VAVLKGNLGAIRSIRYTS-------DGRYMATAEPADFVHVYDVKSGYEKE---QEID-FFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 354 ~~~~~~~~~~v~~l~~s~-------dg~~l~~~~~dg~i~iwd~~~~~~~~---~~~~-~~~~v~~~~~spdg~~l~~~~ 422 (446)
+..+..| .++..+.|-. .|.++++.-..+.|....+..+..+. .+.. ....+..+++.|||.+.++..
T Consensus 246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 246 VFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred ceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence 3344444 4566777754 34556655556788888887553322 2222 334799999999999887766
Q ss_pred ecCCc
Q 013282 423 WDRTY 427 (446)
Q Consensus 423 ~D~~~ 427 (446)
.+|.|
T Consensus 325 ~~G~i 329 (331)
T PF07995_consen 325 SDGKI 329 (331)
T ss_dssp TTTTE
T ss_pred CCCeE
Confidence 56544
No 446
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.01 E-value=0.96 Score=27.57 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=29.7
Q ss_pred CCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEE
Q 013282 244 PSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQ 284 (446)
Q Consensus 244 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~ 284 (446)
|+++.++++...+++|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 46676666676789999999999988888774444444444
No 447
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=9.4 Score=34.74 Aligned_cols=140 Identities=15% Similarity=0.064 Sum_probs=90.1
Q ss_pred EEEEEeCCCcEEEEecCcceeeEe---eeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc---eEEEecCCCCcee
Q 013282 249 HFTASNNDCGVRDFDMGKYQLSKH---FRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK---TIASLCGHLDFSF 322 (446)
Q Consensus 249 ~l~s~s~dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~ 322 (446)
....+..+..++|+|+.+...-.. +...+--.++.+ .|+++.++..+.-+.++|+.+.+ +............
T Consensus 98 yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~ 175 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH 175 (370)
T ss_pred EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce
Confidence 567777888899999976543333 333344445555 48888888867678889987543 3333433333334
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCCcceEEEecCCC-ceEEEEEccCCCEEEEEeCCCeEEEEEcCCCe
Q 013282 323 ASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG-AIRSIRYTSDGRYMATAEPADFVHVYDVKSGY 394 (446)
Q Consensus 323 ~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~ 394 (446)
.++. .|++...+..|+-+.|-|+.++..++..-.-..+ .+.++..+++.-+++.. ..| +.+-|..+.+
T Consensus 176 ~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-~eg-vlivd~s~~s 244 (370)
T COG5276 176 DVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-DEG-VLIVDVSGPS 244 (370)
T ss_pred eEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-ccc-eEEEecCCCC
Confidence 5565 4778888889999999999876665544333333 68888888776555543 233 6677766554
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.78 E-value=11 Score=36.55 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=64.9
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-----eEEEecCC--CCceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGK-----TIASLCGH--LDFSFASAWHPNGVTFATGNQDKTCRIWDL 347 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~--~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~ 347 (446)
....+..+.+.+++..++++ ..|.+. +....++ ....+... ...+.++.|.+++..+++| ..|.+....
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~- 354 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST- 354 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-
Confidence 45568899999998877765 445543 3334443 22222211 2348889999888766665 567665553
Q ss_pred cCCCcceEEEe---cCCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 013282 348 RNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVY 388 (446)
Q Consensus 348 ~~~~~~~~~~~---~~~~~v~~l~~s~dg~~l~~~~~dg~i~iw 388 (446)
..++.-.... .-......+.|.++++.+++ +.+|.|.-|
T Consensus 355 -D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 355 -DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred -CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 2244433332 22356889999887776654 457766544
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=3 Score=40.83 Aligned_cols=78 Identities=8% Similarity=0.077 Sum_probs=52.6
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEccCC--------CcceE---E-------Eec-CCCceEEEEEccCC---CEEE
Q 013282 320 FSFASAWHPNGVTFATGNQDKTCRIWDLRNL--------SESVA---V-------LKG-NLGAIRSIRYTSDG---RYMA 377 (446)
Q Consensus 320 ~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~--------~~~~~---~-------~~~-~~~~v~~l~~s~dg---~~l~ 377 (446)
.|..+..+|.|..++-.+.+|.+.++=.+.. ++++. + +.. ..-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4677888999999999999997666543221 11111 1 111 11246678999986 5777
Q ss_pred EEeCCCeEEEEEcCCCeeEe
Q 013282 378 TAEPADFVHVYDVKSGYEKE 397 (446)
Q Consensus 378 ~~~~dg~i~iwd~~~~~~~~ 397 (446)
.-+.|..|++||+.....+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 88899999999998765543
No 450
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.61 E-value=0.13 Score=54.56 Aligned_cols=6 Identities=50% Similarity=1.054 Sum_probs=2.4
Q ss_pred ecccee
Q 013282 129 LHFQLR 134 (446)
Q Consensus 129 ~h~~~~ 134 (446)
.||..|
T Consensus 770 ~~Fk~R 775 (784)
T PF04931_consen 770 IHFKNR 775 (784)
T ss_pred HHHHHH
Confidence 344433
No 451
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=8.8 Score=33.07 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=93.3
Q ss_pred eEEEEEeC--CCcEEEEecCcceeeEeeeCC-CCeeEEEECCCCCEEEEE-ecCCcEEEEECCCCceEEEecCCCCceeE
Q 013282 248 VHFTASNN--DCGVRDFDMGKYQLSKHFRFP-WPVNHSSQSPDGKLLIIV-GDNPDGLLVDSMTGKTIASLCGHLDFSFA 323 (446)
Q Consensus 248 ~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 323 (446)
.++.+.+. ...|++||+.+++.+...... ..+..=-+..-|..+..- =.+|....+|..+-+++..+. ..+.-..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWg 135 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWG 135 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCccee
Confidence 35555543 346999999999987766633 222222222224444333 357788899988887776654 2333334
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCCc---ceEEEecC-CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEe
Q 013282 324 SAWHPNGVTFATGNQDKTCRIWDLRNLSE---SVAVLKGN-LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQE 399 (446)
Q Consensus 324 ~~~~p~~~~l~sgs~d~~v~iwd~~~~~~---~~~~~~~~-~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~ 399 (446)
++ .++..|+.+....+++.-|..+... ...++.+. -..++-+.|- +|...|-.-....|...+..+|+.+..+
T Consensus 136 Lt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 136 LT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred ee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 44 3555677666566777777643211 11112111 1122233332 4555554444555666666666544332
Q ss_pred e------------ccccCeEEEEEcCCCCcEEEEE
Q 013282 400 I------------DFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 400 ~------------~~~~~v~~~~~spdg~~l~~~~ 422 (446)
. .+..-.++|++.|++..++..+
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2 2344688999999986666554
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.96 E-value=0.11 Score=53.40 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=74.3
Q ss_pred CCCCeeEEEECC-CCCEEEEEecCCcEEEEECC--CCceEEEec-----CCCCceeEEEECC---CCCEEEEEeCCCcEE
Q 013282 275 FPWPVNHSSQSP-DGKLLIIVGDNPDGLLVDSM--TGKTIASLC-----GHLDFSFASAWHP---NGVTFATGNQDKTCR 343 (446)
Q Consensus 275 ~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~-----~~~~~v~~~~~~p---~~~~l~sgs~d~~v~ 343 (446)
+++.+-.+.|.. +-..++ -.-|.+.+|++. .|+....+. .....+.-+.|.| +..++..+-.+++++
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 556666676632 111222 233567888875 555433332 2233445566766 556677777788888
Q ss_pred EEEccCCCcceEEEecCCCceEEE-----------EEccCCCEEEEEeCCCeEEEEEcC-----CCeeEeEeeccc
Q 013282 344 IWDLRNLSESVAVLKGNLGAIRSI-----------RYTSDGRYMATAEPADFVHVYDVK-----SGYEKEQEIDFF 403 (446)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~v~~l-----------~~s~dg~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~ 403 (446)
+..... .....+.+|..++..+ ..||||..+|.++.||.+++|-+. ...+++....|.
T Consensus 209 lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 209 LLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred Eeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 887743 2224445566554443 258999999999999998888653 223444444555
No 453
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.96 E-value=1.6 Score=38.44 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=51.4
Q ss_pred eeCCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEe-------c-------CCCCceeEEEECCCCCEEEEEeC
Q 013282 273 FRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASL-------C-------GHLDFSFASAWHPNGVTFATGNQ 338 (446)
Q Consensus 273 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~-------~~~~~v~~~~~~p~~~~l~sgs~ 338 (446)
+..+.++..+. ..+++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+
T Consensus 9 i~Lgs~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls- 85 (219)
T PF07569_consen 9 IVLGSPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS- 85 (219)
T ss_pred EecCCceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-
Confidence 33445555544 56889999999999999999988765432 1 2445677788888887666654
Q ss_pred CCcEEEEEcc
Q 013282 339 DKTCRIWDLR 348 (446)
Q Consensus 339 d~~v~iwd~~ 348 (446)
+|....|+..
T Consensus 86 ng~~y~y~~~ 95 (219)
T PF07569_consen 86 NGDSYSYSPD 95 (219)
T ss_pred CCCEEEeccc
Confidence 4677888773
No 454
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.84 E-value=18 Score=35.71 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=36.6
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCce--EEEec-----CCCCceeEEEECCCC
Q 013282 278 PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKT--IASLC-----GHLDFSFASAWHPNG 330 (446)
Q Consensus 278 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~-----~~~~~v~~~~~~p~~ 330 (446)
....|+|.|+|++|++--..|.|++++..++.. +..+. ...+....|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 467889999998776655569999998665432 22111 135678999999874
No 455
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.68 E-value=1.5 Score=38.60 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=48.2
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCCcceEE------Ee-------cCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 013282 326 WHPNGVTFATGNQDKTCRIWDLRNLSESVAV------LK-------GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 326 ~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~------~~-------~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~ 392 (446)
+...+++|++-+.+|.+++||+.+....+.. +. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999763322211 11 2446788999999998776655 57789998665
Q ss_pred C
Q 013282 393 G 393 (446)
Q Consensus 393 ~ 393 (446)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.52 E-value=1.9 Score=26.20 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=28.4
Q ss_pred cCCCEEEEEe-CCCeEEEEEcCCCeeEeEeeccccCeEEEEEc
Q 013282 371 SDGRYMATAE-PADFVHVYDVKSGYEKEQEIDFFGEISGISFS 412 (446)
Q Consensus 371 ~dg~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 412 (446)
|++++|+++. .++.|.++|+.++..+..+.- ......+.|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 6778777665 578999999998877766654 3344555553
No 457
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.39 E-value=17 Score=34.79 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCCeeeEEEEe------ecCCCceeeEEEEeCC-CCCeEEEEEeCCCcEEEEecC---c----ceeeEeee
Q 013282 209 GELICKHLDRPGVSFCSRTT------YDDNAITNAVEIYGSP-SGAVHFTASNNDCGVRDFDMG---K----YQLSKHFR 274 (446)
Q Consensus 209 g~i~vw~~~~~~~~~~~~~~------~~~~~~v~~i~~~~s~-~~~~~l~s~s~dg~v~iwd~~---~----~~~~~~~~ 274 (446)
.+|++|.+....... ..+. ......+..++++.++ +|..+++....+|.+..|-+. . +++++.|.
T Consensus 127 n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 469999887432221 1111 1112235678888776 466678888899999988774 2 35788888
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-----CceEEEecC--CCCceeEEEEC--CCC-CEEEEEeC-CCcEE
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMT-----GKTIASLCG--HLDFSFASAWH--PNG-VTFATGNQ-DKTCR 343 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~--~~~~v~~~~~~--p~~-~~l~sgs~-d~~v~ 343 (446)
....+..+........|.++-.+.-|.-|+... ++.+....+ ....|..+++- +++ .+|+..++ +++..
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 778899999998888999999998888888762 222323322 34567777774 343 35666665 78999
Q ss_pred EEEccCCCcceEEE
Q 013282 344 IWDLRNLSESVAVL 357 (446)
Q Consensus 344 iwd~~~~~~~~~~~ 357 (446)
||+.......+..|
T Consensus 286 Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 286 VYDREGPNAYVGSF 299 (381)
T ss_dssp EEESSTT--EEEEE
T ss_pred EEecCCCCcccceE
Confidence 99986544444444
No 458
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.34 E-value=1.8 Score=44.26 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=45.7
Q ss_pred CCcEEEEeccCCcEEEEEcCC---CCeeeEEEEeecC--------------------CCceeeEEEEeCC---CCCeEEE
Q 013282 198 KDKLLVAGGFQGELICKHLDR---PGVSFCSRTTYDD--------------------NAITNAVEIYGSP---SGAVHFT 251 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~---~~~~~~~~~~~~~--------------------~~~v~~i~~~~s~---~~~~~l~ 251 (446)
+...++.+..||.+....... .+..........+ .+.+..+.+ ++ ++..+++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 234 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAV--SSSEINDDTFLF 234 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-------ETTTEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEE--ecceeCCCCEEE
Confidence 788899999999998888765 2222212222111 123344444 33 2445788
Q ss_pred EEeCCCcEEEEecCcceeeEeee
Q 013282 252 ASNNDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 252 s~s~dg~v~iwd~~~~~~~~~~~ 274 (446)
+.+.|+++|+||+.+++++.+..
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEec
Confidence 99999999999999999976654
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=4.8 Score=39.45 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=48.5
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEEC---------CCCceEEEe----------c-CCCCceeEEEECCCC---CEEE
Q 013282 278 PVNHSSQSPDGKLLIIVGDNPDGLLVDS---------MTGKTIASL----------C-GHLDFSFASAWHPNG---VTFA 334 (446)
Q Consensus 278 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~---------~~~~~~~~~----------~-~~~~~v~~~~~~p~~---~~l~ 334 (446)
.|..+..++.|..++.+|.+|.+.++=. +.|+.+... . ...-.+..++|||+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3667888999999999988886654331 234332211 1 111245678999964 6777
Q ss_pred EEeCCCcEEEEEccC
Q 013282 335 TGNQDKTCRIWDLRN 349 (446)
Q Consensus 335 sgs~d~~v~iwd~~~ 349 (446)
.-+.|.++|+||+..
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 788899999999854
No 460
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.08 E-value=22 Score=38.15 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=74.3
Q ss_pred ceEEEEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCC---CeEEEEEeCCCcEEEEecCc
Q 013282 190 TQVSTLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSG---AVHFTASNNDCGVRDFDMGK 266 (446)
Q Consensus 190 ~~v~~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~---~~~l~s~s~dg~v~iwd~~~ 266 (446)
..|.+.+++.+.++.+..+|.+.-+.....+..........-...+.++++...+-| ..+++.++.|+.++++.+..
T Consensus 540 ~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 540 VRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 367777778889999999999888877644433222222334556777777333322 34789999999999999886
Q ss_pred ceeeEeee---CCCCeeEEEECC---CCC------EEEEEecCCcEEE--EECCCCce
Q 013282 267 YQLSKHFR---FPWPVNHSSQSP---DGK------LLIIVGDNPDGLL--VDSMTGKT 310 (446)
Q Consensus 267 ~~~~~~~~---~~~~v~~~~~sp---~~~------~l~~~~~d~~i~i--~d~~~~~~ 310 (446)
..++..+. .+.++.++.+-+ .+. +|.+|-.+|.+.- .|..+|+.
T Consensus 620 ~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~l 677 (1205)
T KOG1898|consen 620 SDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQL 677 (1205)
T ss_pred cceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccce
Confidence 66665554 344455444422 331 4455666665532 34445543
No 461
>PRK10115 protease 2; Provisional
Probab=90.05 E-value=28 Score=36.68 Aligned_cols=187 Identities=9% Similarity=0.049 Sum_probs=93.3
Q ss_pred EeCCcEEEEec-----cCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCC-----CcEEEEecC
Q 013282 196 AVKDKLLVAGG-----FQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNND-----CGVRDFDMG 265 (446)
Q Consensus 196 ~~~~~~l~tg~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~d-----g~v~iwd~~ 265 (446)
++++++|+.+. ..-.|++.++.++.... ..... .... +.|.++++.++++...+ ..|+.+++.
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--~~i~~---~~~~--~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP--ELLDN---VEPS--FVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC--ccccC---cceE--EEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 33888887653 33457788887553211 11111 1123 45588888767765533 367888888
Q ss_pred cc--eeeEeee-CCCCee-EEEECCCCCEEEEEec---CCcEEEEECC--CCceEEEecCCCCceeEEEECCCCCEEEEE
Q 013282 266 KY--QLSKHFR-FPWPVN-HSSQSPDGKLLIIVGD---NPDGLLVDSM--TGKTIASLCGHLDFSFASAWHPNGVTFATG 336 (446)
Q Consensus 266 ~~--~~~~~~~-~~~~v~-~~~~sp~~~~l~~~~~---d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg 336 (446)
++ +-...+. ...... .+..+.++++++..+. ++.+.+++.. ++.....+....+....+. +..+.+++..
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~t 286 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRS 286 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEE
Confidence 77 3333444 222233 3333448887765443 4578888853 3443333332223333332 3333333333
Q ss_pred eCC-Cc--EEEEEccCCCcceEEEecC-C-CceEEEEEccCCCEEEEEeCCCe--EEEEEcCC
Q 013282 337 NQD-KT--CRIWDLRNLSESVAVLKGN-L-GAIRSIRYTSDGRYMATAEPADF--VHVYDVKS 392 (446)
Q Consensus 337 s~d-~~--v~iwd~~~~~~~~~~~~~~-~-~~v~~l~~s~dg~~l~~~~~dg~--i~iwd~~~ 392 (446)
..+ .. |...++... .....+..+ . ..|..+.+.. +.++++...+|. |.++++.+
T Consensus 287 n~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 287 NRHGKNFGLYRTRVRDE-QQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKT 347 (686)
T ss_pred cCCCCCceEEEecCCCc-ccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCC
Confidence 322 23 434444322 223444444 3 3677788873 345555556665 44555443
No 462
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.96 E-value=17 Score=34.12 Aligned_cols=141 Identities=12% Similarity=0.081 Sum_probs=66.4
Q ss_pred EEEeCCcEEEEeccCC-----cEEEEEcCCCCeeeEEEEeecCCCce--eeEEEEeCCCCCeEEEEEeC-----CCcEEE
Q 013282 194 TLAVKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAIT--NAVEIYGSPSGAVHFTASNN-----DCGVRD 261 (446)
Q Consensus 194 ~l~~~~~~l~tg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v--~~i~~~~s~~~~~~l~s~s~-----dg~v~i 261 (446)
+++.++.+++.||.++ .+..+++.+................. .++.. -++. +.+.|+. ...+..
T Consensus 68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~---~~~~-iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY---KDGT-LYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE---ECCE-EEEEeCcCCCccCceEEE
Confidence 3445788888888753 45566665544210001111111111 11111 2333 5566653 235888
Q ss_pred EecCcceeeEe--eeCCCCeeEEEECCCCCEEEEEecCC----cEEEEECCCCceE--EEec-CC-CC---ceeEEEECC
Q 013282 262 FDMGKYQLSKH--FRFPWPVNHSSQSPDGKLLIIVGDNP----DGLLVDSMTGKTI--ASLC-GH-LD---FSFASAWHP 328 (446)
Q Consensus 262 wd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~----~i~i~d~~~~~~~--~~~~-~~-~~---~v~~~~~~p 328 (446)
||+.+.+-... +.........+...++++.+.|+.++ .+.+||+.+.+=. ..+. .. .. ...+++ ..
T Consensus 144 yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~ 222 (323)
T TIGR03548 144 FNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-IN 222 (323)
T ss_pred EcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-EC
Confidence 88876554332 21111222233334567777777653 3568888765421 1111 00 10 111122 23
Q ss_pred CCCEEEEEeCC
Q 013282 329 NGVTFATGNQD 339 (446)
Q Consensus 329 ~~~~l~sgs~d 339 (446)
++++++.|+.+
T Consensus 223 ~~~iyv~GG~~ 233 (323)
T TIGR03548 223 ESLLLCIGGFN 233 (323)
T ss_pred CCEEEEECCcC
Confidence 57788888876
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.89 E-value=18 Score=34.16 Aligned_cols=98 Identities=24% Similarity=0.230 Sum_probs=62.4
Q ss_pred eeEEEECCCCCEEEEEecC------CcEEEEECCCCceEEEec---------------CCCCceeEEEECCCCCEEEEEe
Q 013282 279 VNHSSQSPDGKLLIIVGDN------PDGLLVDSMTGKTIASLC---------------GHLDFSFASAWHPNGVTFATGN 337 (446)
Q Consensus 279 v~~~~~sp~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~l~sgs 337 (446)
..++++.++|.++++.-.+ ..|+.++.. |+.+..+. .......+++++|+|+.|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 4477886788877776666 788888876 66554441 1335678999999999777664
Q ss_pred C-----CC--c-------EEEEEcc--CCCcceEE----Eec-----CCCceEEEEEccCCCEEE
Q 013282 338 Q-----DK--T-------CRIWDLR--NLSESVAV----LKG-----NLGAIRSIRYTSDGRYMA 377 (446)
Q Consensus 338 ~-----d~--~-------v~iwd~~--~~~~~~~~----~~~-----~~~~v~~l~~s~dg~~l~ 377 (446)
+ |+ . ++|+... ..+.+... +.. ....|+.+.+-+++++|+
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 3 22 1 5555543 21222222 221 345788999999998665
No 464
>PRK13684 Ycf48-like protein; Provisional
Probab=89.46 E-value=19 Score=34.03 Aligned_cols=145 Identities=14% Similarity=0.042 Sum_probs=80.0
Q ss_pred CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEec-CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013282 276 PWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC-GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESV 354 (446)
Q Consensus 276 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~ 354 (446)
...+..+.+.|++.+++++ ..|.+..-.-..++.-..+. .-...++++.+.|+++.++.| ..|.+++=.. +.+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~-d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP-DDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccC-CCCCcc
Confidence 4568899999987665544 45555432111222222222 334678899999999877765 4576653222 223322
Q ss_pred EEEec----CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee---ccccCeEEEEEcCCCCcEEEEEecCC
Q 013282 355 AVLKG----NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 355 ~~~~~----~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
..... ....+.++.+.|+++.+++ +.+|.|. .....++.-.... ........+.|..+++.++ .+..|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~ 324 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGV 324 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCce
Confidence 22111 2235788999998876654 4567554 3444444333322 2223577888887766655 444443
No 465
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.12 E-value=26 Score=35.05 Aligned_cols=142 Identities=21% Similarity=0.164 Sum_probs=68.1
Q ss_pred CCCcEEEEecCcceeeEeeeCCC-CeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCC---ceeEEEECCCC
Q 013282 255 NDCGVRDFDMGKYQLSKHFRFPW-PVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD---FSFASAWHPNG 330 (446)
Q Consensus 255 ~dg~v~iwd~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~p~~ 330 (446)
....+.++|. .|.+...+.... ....+...++|.+++..+ ..+..+|+. |+.+....-... .-..+..-|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 3455666665 455555554211 111156678898877655 788899975 666655442221 13456778899
Q ss_pred CEEEEEeC--------------CC---------cEEEEEccCCCcceEE----------Eec---CC--CceEEEEEcc-
Q 013282 331 VTFATGNQ--------------DK---------TCRIWDLRNLSESVAV----------LKG---NL--GAIRSIRYTS- 371 (446)
Q Consensus 331 ~~l~sgs~--------------d~---------~v~iwd~~~~~~~~~~----------~~~---~~--~~v~~l~~s~- 371 (446)
++|+.+.. |. .+..||+...-.+... ..+ .. --++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 99888771 21 2344554321111111 000 00 1378899988
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeEeEee
Q 013282 372 DGRYMATAEPADFVHVYDVKSGYEKEQEI 400 (446)
Q Consensus 372 dg~~l~~~~~dg~i~iwd~~~~~~~~~~~ 400 (446)
++.+|+++-.-..|...|.++++....+-
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 55555555555688899988876554443
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.84 E-value=21 Score=33.55 Aligned_cols=100 Identities=10% Similarity=0.154 Sum_probs=50.3
Q ss_pred eEEEEEeCC-----CcEEEEecCcceee---Eeee-CCCCe--eEEEECCCCCEEEEEec-----CCcEEEEECCCCce-
Q 013282 248 VHFTASNND-----CGVRDFDMGKYQLS---KHFR-FPWPV--NHSSQSPDGKLLIIVGD-----NPDGLLVDSMTGKT- 310 (446)
Q Consensus 248 ~~l~s~s~d-----g~v~iwd~~~~~~~---~~~~-~~~~v--~~~~~sp~~~~l~~~~~-----d~~i~i~d~~~~~~- 310 (446)
.+++.|+.+ ..+..+|+.+.+.. ..+. .+.+. .+++. -++++.+.|+. ...+..||+.+.+=
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 366666654 35667777665431 1221 22221 12222 25666677764 24678889876542
Q ss_pred -EEEecCCCCceeEEEECCCCCEEEEEeCCC----cEEEEEccC
Q 013282 311 -IASLCGHLDFSFASAWHPNGVTFATGNQDK----TCRIWDLRN 349 (446)
Q Consensus 311 -~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~----~v~iwd~~~ 349 (446)
+..+... ......+...++++.+.|+.++ .+.+||+.+
T Consensus 153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 2222211 1112222233677888887764 356788754
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.81 E-value=15 Score=31.91 Aligned_cols=103 Identities=10% Similarity=0.074 Sum_probs=63.9
Q ss_pred CEEEEEecCCcEEEEECC--CCceEEEecCCCCceeEEEECCCCCEEEEEeCC---C---cEEEEE-ccC---CCcceE-
Q 013282 289 KLLIIVGDNPDGLLVDSM--TGKTIASLCGHLDFSFASAWHPNGVTFATGNQD---K---TCRIWD-LRN---LSESVA- 355 (446)
Q Consensus 289 ~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d---~---~v~iwd-~~~---~~~~~~- 355 (446)
..|+++.....|.+|++. ..++...|. --+.|..+.++..|++|+|--.+ . .+|+|= .+. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667789999988 345566665 34889999999999999986432 2 566652 111 112222
Q ss_pred EEecC---------------------CCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 013282 356 VLKGN---------------------LGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 356 ~~~~~---------------------~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~ 393 (446)
.+.|| ..++.+++..|-.--|+.|+ ++.+.+|-++..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 22221 23566788877443455555 566899987654
No 468
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.17 E-value=28 Score=34.33 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=37.9
Q ss_pred CCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCC-cceEEEe-----cCCCceEEEEEccCC
Q 013282 317 HLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLS-ESVAVLK-----GNLGAIRSIRYTSDG 373 (446)
Q Consensus 317 ~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~-~~~~~~~-----~~~~~v~~l~~s~dg 373 (446)
.-.....++|.|+|++|++--..|.|++++..... ..+..+. ...+....|+++|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34456789999999888776557999999864321 1221111 124668899999884
No 469
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=87.66 E-value=0.17 Score=36.87 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=3.4
Q ss_pred CCCCCCCccCHHHH
Q 013282 67 GIPWERLSITREKY 80 (446)
Q Consensus 67 ~~~w~~~~~~r~~~ 80 (446)
.+||......+..|
T Consensus 40 e~p~p~fgea~~~~ 53 (101)
T PF09026_consen 40 EVPVPEFGEAMAYF 53 (101)
T ss_dssp ------HHHHHHHH
T ss_pred cccchhHHHHHhhc
Confidence 36776654433333
No 470
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.60 E-value=26 Score=33.23 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=17.9
Q ss_pred EEEeCCcEEEEeccCC-----------cEEEEEcCCCC
Q 013282 194 TLAVKDKLLVAGGFQG-----------ELICKHLDRPG 220 (446)
Q Consensus 194 ~l~~~~~~l~tg~~dg-----------~i~vw~~~~~~ 220 (446)
..+.++.+.+.||... .+..||..+..
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 3445888999998642 36667776554
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.59 E-value=12 Score=34.38 Aligned_cols=94 Identities=21% Similarity=0.357 Sum_probs=58.9
Q ss_pred CCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEe------CCCcEEEEEccCCCcceEEEecC-----CCceE
Q 013282 297 NPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGN------QDKTCRIWDLRNLSESVAVLKGN-----LGAIR 365 (446)
Q Consensus 297 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs------~d~~v~iwd~~~~~~~~~~~~~~-----~~~v~ 365 (446)
-..|++||..+.+=...-.+-.+.|.++.|..+.++++.|. ....+..||+.+ .....+.+. .++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEE
Confidence 45689999877664444445567899999987777777775 345688999854 334444442 36788
Q ss_pred EEEEcc-CC-CEEEEEe-C--CCeEEEEEcCC
Q 013282 366 SIRYTS-DG-RYMATAE-P--ADFVHVYDVKS 392 (446)
Q Consensus 366 ~l~~s~-dg-~~l~~~~-~--dg~i~iwd~~~ 392 (446)
.+.+.. |+ ++.+.|. . +..|..||=.+
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 887743 33 3443333 2 33577776443
No 472
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.28 E-value=29 Score=33.36 Aligned_cols=196 Identities=13% Similarity=-0.001 Sum_probs=103.2
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCC
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPW 277 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 277 (446)
.+..+..+..+|.|...+..+........... ....++.-.+ ..+|+ ++.++.++.++.+|..+++.+..+....
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~--~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPIL--GSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceE--EeCCe--EEEecccceEEEEECCCCcEEEEEecCC
Confidence 45556666888888888887776443222211 0112222222 12554 7888899999999999999998888544
Q ss_pred C--eeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCC---ceeEEEECCCCCEEEEEeC--CCcEEEEEccCC
Q 013282 278 P--VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLD---FSFASAWHPNGVTFATGNQ--DKTCRIWDLRNL 350 (446)
Q Consensus 278 ~--v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~p~~~~l~sgs~--d~~v~iwd~~~~ 350 (446)
. +....+-.++ .+..++.++.++..+..+|+.......... .+..... .....++.+.. ++.+.-.|+..
T Consensus 142 ~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~- 218 (370)
T COG1520 142 SPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAED- 218 (370)
T ss_pred CeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccC-
Confidence 1 1111111233 344444788999999998988766443211 1111000 12234444444 45455555543
Q ss_pred CcceEEEecC----CCceEEEEEccCC-----CEEEEEeCCCeEEEEEcCCCeeEeEeec
Q 013282 351 SESVAVLKGN----LGAIRSIRYTSDG-----RYMATAEPADFVHVYDVKSGYEKEQEID 401 (446)
Q Consensus 351 ~~~~~~~~~~----~~~v~~l~~s~dg-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 401 (446)
+......+.+ ...+........+ .-+..++.++.+...|..+++.+-....
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 4433332111 0001001111111 1234566777788888888877666554
No 473
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.90 E-value=4.2 Score=41.52 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=28.1
Q ss_pred ceEEEEEcc----CCCEEEEEeCCCeEEEEEcCCCeeEeEe
Q 013282 363 AIRSIRYTS----DGRYMATAEPADFVHVYDVKSGYEKEQE 399 (446)
Q Consensus 363 ~v~~l~~s~----dg~~l~~~~~dg~i~iwd~~~~~~~~~~ 399 (446)
.+.++++++ +..+|++.+.|+.+|+||+.++.++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455666666 6689999999999999999999885544
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.42 E-value=15 Score=29.28 Aligned_cols=120 Identities=9% Similarity=-0.020 Sum_probs=0.0
Q ss_pred eeeEEEEeCCCCCeEEEEEeCCCcEEEEecC--------cceeeEeeeCCCCeeEEEECC----CCCEEEEEecCCcEEE
Q 013282 235 TNAVEIYGSPSGAVHFTASNNDCGVRDFDMG--------KYQLSKHFRFPWPVNHSSQSP----DGKLLIIVGDNPDGLL 302 (446)
Q Consensus 235 v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~--------~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~~i~i 302 (446)
|..-++ ..... .|++++.-|.|.|++.. ....+..+.....|++++-.| ++.-++..+....+..
T Consensus 1 VaiGkf--DG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 1 VAIGKF--DGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred CeEEEe--CCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEE
Q ss_pred EECCCCceEEEecCCCCceeEEEECC---CCCEEEEEeCCCcEEEEEccCCCcceEEEec
Q 013282 303 VDSMTGKTIASLCGHLDFSFASAWHP---NGVTFATGNQDKTCRIWDLRNLSESVAVLKG 359 (446)
Q Consensus 303 ~d~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~ 359 (446)
||+....-+..-. -.+.|.++.+-. ...-++..+-+..|.-+|. ...+...+..+
T Consensus 78 YDV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~-~G~e~fWtVtg 135 (136)
T PF14781_consen 78 YDVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY-EGNEIFWTVTG 135 (136)
T ss_pred EEcccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCC-CCcEEEEEecc
No 475
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.25 E-value=27 Score=32.13 Aligned_cols=170 Identities=12% Similarity=0.083 Sum_probs=90.6
Q ss_pred cEEEEeccCCcEEEEEcCCCCee--eEEEEee-cCCCc-eeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceee--Eee
Q 013282 200 KLLVAGGFQGELICKHLDRPGVS--FCSRTTY-DDNAI-TNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLS--KHF 273 (446)
Q Consensus 200 ~~l~tg~~dg~i~vw~~~~~~~~--~~~~~~~-~~~~~-v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~ 273 (446)
..++.++.+|+|.-|...-.... ....... ...+. -..+++.-...+..+.++--..++|.+||-.=.++. ..+
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 34788999999999985433220 1112221 11122 234555323334544444456789999985322211 011
Q ss_pred eC--------CCCee---------EEEECCCCCEEEEEecCCcEEEEECCCCceEEEec--CCCCceeEEEECC------
Q 013282 274 RF--------PWPVN---------HSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLC--GHLDFSFASAWHP------ 328 (446)
Q Consensus 274 ~~--------~~~v~---------~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~p------ 328 (446)
.- +..|. -..-.+++..=+.|...|.|-+||+ .|+.++++. +....-..++..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 10 11111 1111222222233444578899996 477888774 2333445667766
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEEEecCCC------ceEEEEEcc
Q 013282 329 NGVTFATGNQDKTCRIWDLRNLSESVAVLKGNLG------AIRSIRYTS 371 (446)
Q Consensus 329 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~~~~~------~v~~l~~s~ 371 (446)
.|.+|+----||+|..+|..+ +..+..+....+ .++.|+|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~s-G~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQS-GAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCC-CceeeeecCCCCCeEEecCeEEeeeCC
Confidence 455555444599999999955 666666654332 466777755
No 476
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.08 E-value=35 Score=33.17 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=77.1
Q ss_pred eeEEEECCCCCEEEEEecCCcEEEEECCCCceE-EEe-cCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCc----
Q 013282 279 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-ASL-CGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE---- 352 (446)
Q Consensus 279 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-~~~-~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~---- 352 (446)
...+..++++.+++++....-++-|| .|+.. ..+ ......+.++.|.+++.+++++ ..|.+..- ... +.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~-G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGT-GLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCC-CCcccc
Confidence 34455677877666665443223333 23221 111 2234568899999999888766 45554332 212 32
Q ss_pred -ceEEEec--CCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee---ccccCeEEEEEcCCCCcEEEEEecCC
Q 013282 353 -SVAVLKG--NLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI---DFFGEISGISFSPDTESLFIGVWDRT 426 (446)
Q Consensus 353 -~~~~~~~--~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~~D~~ 426 (446)
....... ....+.++.|.+++..++ ++..|.+.... ..|+.-.... .-...+..+.|.++++.+ +.+.+|.
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~-~~G~~G~ 392 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGF-VLGNDGV 392 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceE-EEeCCcE
Confidence 2222221 123588999998887655 45677665553 4444322222 234568899998876554 4555554
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.97 E-value=3.6 Score=24.60 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=21.0
Q ss_pred ecCCCCceeEEEECCCCCEEEEEeC-C--CcEEEE
Q 013282 314 LCGHLDFSFASAWHPNGVTFATGNQ-D--KTCRIW 345 (446)
Q Consensus 314 ~~~~~~~v~~~~~~p~~~~l~sgs~-d--~~v~iw 345 (446)
+......-...+|+|+|+.|+.++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3334556778899999998887665 4 555555
No 478
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.67 E-value=3.4 Score=24.69 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=19.7
Q ss_pred ecCCCceEEEEEccCCCEEEEEeC-C--CeEEEE
Q 013282 358 KGNLGAIRSIRYTSDGRYMATAEP-A--DFVHVY 388 (446)
Q Consensus 358 ~~~~~~v~~l~~s~dg~~l~~~~~-d--g~i~iw 388 (446)
....+.-....|+|||++|+.++. + |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334556778999999998876553 4 555554
No 479
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.62 E-value=35 Score=32.84 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=13.5
Q ss_pred EeCCcEEEEeccC-CcEEEEEcCC
Q 013282 196 AVKDKLLVAGGFQ-GELICKHLDR 218 (446)
Q Consensus 196 ~~~~~~l~tg~~d-g~i~vw~~~~ 218 (446)
.+++.+.+.|+.. ..+.++++..
T Consensus 36 ~~~~~iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 36 IDNNTVYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred EECCEEEEEeCCCCCeEEEEECCC
Confidence 3477777766653 3456667653
No 480
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.52 E-value=36 Score=32.81 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=17.6
Q ss_pred EEEeCCcEEEEeccCC-----------cEEEEEcCCCC
Q 013282 194 TLAVKDKLLVAGGFQG-----------ELICKHLDRPG 220 (446)
Q Consensus 194 ~l~~~~~~l~tg~~dg-----------~i~vw~~~~~~ 220 (446)
+...++.+.+.||..+ .+..||..+..
T Consensus 80 ~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 80 AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred EEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 3444888888888643 36667766554
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.42 E-value=3.3 Score=39.81 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=84.6
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceE-EEec-CCCC----cee-EEEECCCCCEEEEEeCCCcEEEE-E
Q 013282 275 FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI-ASLC-GHLD----FSF-ASAWHPNGVTFATGNQDKTCRIW-D 346 (446)
Q Consensus 275 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~-~~~~----~v~-~~~~~p~~~~l~sgs~d~~v~iw-d 346 (446)
....+..+-..|+|+.+.+-+. .++.++++.+.... +++. ...+ .|+ ++..-..|.-+..++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 4556788889999999877665 57888887654321 1111 1111 122 12222356678888899988877 6
Q ss_pred ccCCCcc----eEEEecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEE
Q 013282 347 LRNLSES----VAVLKGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 347 ~~~~~~~----~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
.+..+.+ ++.++-....+..+.-..+.+-+++-..+|.+.++...+.+.+.... .-..+.-+++||.+.+|++-
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e 375 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSE 375 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchheee
Confidence 6554432 12222222334434323334566777888888888755544333222 22356778999999998753
No 482
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.25 E-value=31 Score=31.84 Aligned_cols=170 Identities=15% Similarity=0.156 Sum_probs=89.2
Q ss_pred cEEEEEcCCCCeeeEEEEee---cCCCceeeEEEEeCCCC---CeEEEEEeCCCcEEEEecCcceeeEeee---------
Q 013282 210 ELICKHLDRPGVSFCSRTTY---DDNAITNAVEIYGSPSG---AVHFTASNNDCGVRDFDMGKYQLSKHFR--------- 274 (446)
Q Consensus 210 ~i~vw~~~~~~~~~~~~~~~---~~~~~v~~i~~~~s~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------- 274 (446)
+|.+||+.+.+......+.. ...+..+.+.+...+.. ....++=+..+.|.++|+.+++.-+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 57778887776543322221 13455666766433321 2334444555789999999876544332
Q ss_pred -----------CCCCeeEEEECC---CCCEEEEEecCC-cEEEEEC---CCCc---------eEEEecCCCCceeEEEEC
Q 013282 275 -----------FPWPVNHSSQSP---DGKLLIIVGDNP-DGLLVDS---MTGK---------TIASLCGHLDFSFASAWH 327 (446)
Q Consensus 275 -----------~~~~v~~~~~sp---~~~~l~~~~~d~-~i~i~d~---~~~~---------~~~~~~~~~~~v~~~~~~ 327 (446)
....+..++.+| +++.|....-.+ .++-... ++.. .+..+.........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 122255556554 555665554332 2222221 1111 112221112356678899
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCC--cceEEEec--C-CCceEEEEEcc--CCCEEEEE
Q 013282 328 PNGVTFATGNQDKTCRIWDLRNLS--ESVAVLKG--N-LGAIRSIRYTS--DGRYMATA 379 (446)
Q Consensus 328 p~~~~l~sgs~d~~v~iwd~~~~~--~~~~~~~~--~-~~~v~~l~~s~--dg~~l~~~ 379 (446)
++|.++++--..+.|..|+....- .....+.. . ...+.++++.+ +|.+.+.+
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999999998889999999996411 12222221 2 34778899998 77655544
No 483
>PLN02193 nitrile-specifier protein
Probab=85.15 E-value=43 Score=33.43 Aligned_cols=140 Identities=11% Similarity=0.025 Sum_probs=66.2
Q ss_pred EEEeCCcEEEEeccCC-----cEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCC-----cEEEEe
Q 013282 194 TLAVKDKLLVAGGFQG-----ELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDC-----GVRDFD 263 (446)
Q Consensus 194 ~l~~~~~~l~tg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg-----~v~iwd 263 (446)
....++.+++.||.++ .+.++|+.+...................... .-+ ..+++.|+.++ .+..||
T Consensus 224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~--~~~-~~iYv~GG~~~~~~~~~~~~yd 300 (470)
T PLN02193 224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA--ADE-ENVYVFGGVSATARLKTLDSYN 300 (470)
T ss_pred EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE--EEC-CEEEEECCCCCCCCcceEEEEE
Confidence 3344888888888764 4677787665432111100001111111111 112 33566665443 467788
Q ss_pred cCcceeeEeee-----CCCCeeEEEECCCCCEEEEEecC----CcEEEEECCCCceEEEecC----C-CCceeEEEECCC
Q 013282 264 MGKYQLSKHFR-----FPWPVNHSSQSPDGKLLIIVGDN----PDGLLVDSMTGKTIASLCG----H-LDFSFASAWHPN 329 (446)
Q Consensus 264 ~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~----~-~~~v~~~~~~p~ 329 (446)
+.+.+-...-. ....-..++. -+++.++.++.+ ..+.+||+.+.+-.. +.. . .....+++ .-+
T Consensus 301 ~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~-~~~~g~~P~~R~~~~~~-~~~ 377 (470)
T PLN02193 301 IVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ-VETFGVRPSERSVFASA-AVG 377 (470)
T ss_pred CCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEE-eccCCCCCCCcceeEEE-EEC
Confidence 77655432111 0011111222 256777777654 468999988765322 211 1 11111222 225
Q ss_pred CCEEEEEeCC
Q 013282 330 GVTFATGNQD 339 (446)
Q Consensus 330 ~~~l~sgs~d 339 (446)
+++++.|+..
T Consensus 378 ~~iyv~GG~~ 387 (470)
T PLN02193 378 KHIVIFGGEI 387 (470)
T ss_pred CEEEEECCcc
Confidence 6778888753
No 484
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.14 E-value=44 Score=33.47 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=60.3
Q ss_pred CCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCe----eEEEECCCCCEEEEEec-------------CCcEEEEEC
Q 013282 243 SPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPV----NHSSQSPDGKLLIIVGD-------------NPDGLLVDS 305 (446)
Q Consensus 243 s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v----~~~~~sp~~~~l~~~~~-------------d~~i~i~d~ 305 (446)
.++|. +++ ++. ..++.+|+. |+.+..+..+... ..+..-|+|++|+.+.. .-.|..+|
T Consensus 156 l~nG~-ll~-~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd- 230 (477)
T PF05935_consen 156 LPNGN-LLI-GSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD- 230 (477)
T ss_dssp -TTS--EEE-EEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--
T ss_pred cCCCC-EEE-ecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-
Confidence 68886 333 333 889999984 6677777655433 56777899999987772 22466777
Q ss_pred CCCceEEEec--CCC-------------------------CceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCcceEEE
Q 013282 306 MTGKTIASLC--GHL-------------------------DFSFASAWHP-NGVTFATGNQDKTCRIWDLRNLSESVAVL 357 (446)
Q Consensus 306 ~~~~~~~~~~--~~~-------------------------~~v~~~~~~p-~~~~l~sgs~d~~v~iwd~~~~~~~~~~~ 357 (446)
.+|+.+..+. .|- -.+.++.+.| ++.+++++-.-..|...|.++ ++....+
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t-~~i~Wil 309 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT-GKIKWIL 309 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT-S-EEEEE
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC-CcEEEEe
Confidence 7887776642 111 1368899989 555555555455788888644 5555555
Q ss_pred ecC
Q 013282 358 KGN 360 (446)
Q Consensus 358 ~~~ 360 (446)
..+
T Consensus 310 g~~ 312 (477)
T PF05935_consen 310 GPP 312 (477)
T ss_dssp S-S
T ss_pred CCC
Confidence 443
No 485
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=84.80 E-value=7.7 Score=41.02 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=61.0
Q ss_pred EEEEe-cCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEE-EeCCC-----cEEEEEccCCCcceEEEecCCCc
Q 013282 291 LIIVG-DNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFAT-GNQDK-----TCRIWDLRNLSESVAVLKGNLGA 363 (446)
Q Consensus 291 l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s-gs~d~-----~v~iwd~~~~~~~~~~~~~~~~~ 363 (446)
||... ..+.|.+-|.....+...-..+..+|.+-+|+|||+.||- .+..+ .|.+-++++.+.-+..+.....+
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aa 400 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAA 400 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccccc
Confidence 43333 3458888887765554431336788999999999999998 44443 48899998877766777766777
Q ss_pred eEEEEEccCCCEE
Q 013282 364 IRSIRYTSDGRYM 376 (446)
Q Consensus 364 v~~l~~s~dg~~l 376 (446)
|..-...++|..+
T Consensus 401 iprwrv~e~gdt~ 413 (912)
T TIGR02171 401 IPRWRVLENGDTV 413 (912)
T ss_pred ccceEecCCCCeE
Confidence 8777778888643
No 486
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.52 E-value=33 Score=35.79 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=52.0
Q ss_pred eEEEECCCCCEEEEEeCCC-----cEEEEEccCCCcceEEE---ecCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 013282 322 FASAWHPNGVTFATGNQDK-----TCRIWDLRNLSESVAVL---KGNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 322 ~~~~~~p~~~~l~sgs~d~-----~v~iwd~~~~~~~~~~~---~~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~ 393 (446)
..++|-|+|..++|-..|| .|..+.. + +-....+ .+....+..++|+-....++.+. .+.|++|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-N-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-N-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNY 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-C-CcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccce
Confidence 4589999999999987655 2444443 2 1111111 11223456677877666666544 556999987653
Q ss_pred eeEeEeeccccCeEEEEEcCCCC
Q 013282 394 YEKEQEIDFFGEISGISFSPDTE 416 (446)
Q Consensus 394 ~~~~~~~~~~~~v~~~~~spdg~ 416 (446)
..-....-....+.-+.|+|...
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccC
Confidence 21111111233466788888544
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.15 E-value=11 Score=41.40 Aligned_cols=136 Identities=14% Similarity=0.168 Sum_probs=81.7
Q ss_pred eCCCcEEEEecCcceeeEeee-CCCCeeEEEE--------CCCCCEEEEEecCCcEEEEECC----CCce---E--EEec
Q 013282 254 NNDCGVRDFDMGKYQLSKHFR-FPWPVNHSSQ--------SPDGKLLIIVGDNPDGLLVDSM----TGKT---I--ASLC 315 (446)
Q Consensus 254 s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~--------sp~~~~l~~~~~d~~i~i~d~~----~~~~---~--~~~~ 315 (446)
+.|..+.+|+.+++.....+. ....|..+.+ -|.=+++++.+.--.|.|+-+. ++.. . .++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 367889999998866555554 3334444332 2333445444444456666443 2211 1 1122
Q ss_pred CCCCceeEEEECCCCCEEEEEeCCCcEEEEEccC----C---Cc----------------ceEEEe-cCCCceEEEEEcc
Q 013282 316 GHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRN----L---SE----------------SVAVLK-GNLGAIRSIRYTS 371 (446)
Q Consensus 316 ~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~----~---~~----------------~~~~~~-~~~~~v~~l~~s~ 371 (446)
.....|.++....+|+.|++|-.+ .||.+-- . .+ .+-.+. .+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 224567888877899988877544 4554310 0 00 011223 4566899999988
Q ss_pred CCCEEEEEeCCCeEEEEEcCC
Q 013282 372 DGRYMATAEPADFVHVYDVKS 392 (446)
Q Consensus 372 dg~~l~~~~~dg~i~iwd~~~ 392 (446)
....|.+-+..|+|.+|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999876
No 488
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=84.08 E-value=9.1 Score=28.20 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=28.9
Q ss_pred EeCCCeEEEEEcCCCeeEeEeeccccCeEEEEEcCCCCcEEEEE
Q 013282 379 AEPADFVHVYDVKSGYEKEQEIDFFGEISGISFSPDTESLFIGV 422 (446)
Q Consensus 379 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~ 422 (446)
+..+|.+.-||+.+++....+. .-.-.++|+++||+.+|+++-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEe
Confidence 3456779999999986443333 334679999999999988774
No 489
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.04 E-value=57 Score=33.89 Aligned_cols=160 Identities=10% Similarity=-0.028 Sum_probs=77.8
Q ss_pred eEEEEEe-CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEE-ecCcce
Q 013282 191 QVSTLAV-KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDF-DMGKYQ 268 (446)
Q Consensus 191 ~v~~l~~-~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iw-d~~~~~ 268 (446)
.+..|.| +...|++-..+|+++||++..................|.-+.+ ..+| +++-..+|.|.+- +.....
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~--f~~G---Vavlt~~g~v~~i~~~~~~~ 159 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRF--FHNG---VAVLTVSGQVILINGVEEPK 159 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEE--ecCc---eEEEecCCcEEEEcCCCcch
Confidence 5778999 7888999999999999998544322110111111112222333 3455 2222244554443 332211
Q ss_pred eeEeee--C--CCCeeEEEECCCCC---EEEEEe-cCC-cEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCC
Q 013282 269 LSKHFR--F--PWPVNHSSQSPDGK---LLIIVG-DNP-DGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQD 339 (446)
Q Consensus 269 ~~~~~~--~--~~~v~~~~~sp~~~---~l~~~~-~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d 339 (446)
.+... . .-+.+|-...+++. .++-.. ..+ .+..-+....+ ...+......+..+..+|+.++|+-=...
T Consensus 160 -~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~~~~~~~~~ki~VS~n~~~laLyt~~ 237 (829)
T KOG2280|consen 160 -LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHALSWPNSSVVKISVSPNRRFLALYTET 237 (829)
T ss_pred -hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccc-ccccCCCCceEEEEEEcCCcceEEEEecC
Confidence 12221 0 11112222222221 111111 000 11111111222 22222223567788999999999999999
Q ss_pred CcEEEEEccCCCcceEEEe
Q 013282 340 KTCRIWDLRNLSESVAVLK 358 (446)
Q Consensus 340 ~~v~iwd~~~~~~~~~~~~ 358 (446)
|.|.+-++.. .+....+.
T Consensus 238 G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 238 GKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred CcEEEEecch-hhhhhccC
Confidence 9999988843 55555444
No 490
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.87 E-value=33 Score=31.07 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=106.9
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEee---e
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHF---R 274 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---~ 274 (446)
+|..-.++...|.|=-.|..+++.. ...-+.......|.+ -|+|...|.-++. -|.-+|-++.+..+.- .
T Consensus 72 dG~VWft~qg~gaiGhLdP~tGev~---~ypLg~Ga~Phgiv~--gpdg~~Witd~~~--aI~R~dpkt~evt~f~lp~~ 144 (353)
T COG4257 72 DGAVWFTAQGTGAIGHLDPATGEVE---TYPLGSGASPHGIVV--GPDGSAWITDTGL--AIGRLDPKTLEVTRFPLPLE 144 (353)
T ss_pred CCceEEecCccccceecCCCCCceE---EEecCCCCCCceEEE--CCCCCeeEecCcc--eeEEecCcccceEEeecccc
Confidence 6666666666665554455555432 111122233344444 6777754433322 4555565554433221 1
Q ss_pred -CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCC-CCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCc
Q 013282 275 -FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGH-LDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSE 352 (446)
Q Consensus 275 -~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~ 352 (446)
....++...|.+.|++-+++... .---.|..+ ..+..+... ...-+.++..|+|...++.-.+..|-..|.....
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~- 221 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIG-AYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGH- 221 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccc-cceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCC-
Confidence 35568889999999988887532 111112211 233344322 2345678889999988887778888888875532
Q ss_pred ceEEEe---cCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 013282 353 SVAVLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSG 393 (446)
Q Consensus 353 ~~~~~~---~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~ 393 (446)
...+. ......+.+--+|.|+.-++-...+.++.||....
T Consensus 222 -aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 222 -AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred -cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 22222 11234556666888988888888888999987654
No 491
>PRK13615 lipoprotein LpqB; Provisional
Probab=83.75 E-value=53 Score=33.45 Aligned_cols=138 Identities=10% Similarity=0.019 Sum_probs=82.2
Q ss_pred eEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCceeEEEECCCCCEEEEEeCCCcEEEEEccCCCcceEE-Ee
Q 013282 280 NHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSFASAWHPNGVTFATGNQDKTCRIWDLRNLSESVAV-LK 358 (446)
Q Consensus 280 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~ 358 (446)
.+++.++++..++....++.+.++... +.....+. ...++.-.|.++| .+.+.-.....++......+..... ..
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 678999999999888777777777554 22222232 2245666788887 5666655445566555332333221 11
Q ss_pred c-CCCceEEEEEccCCCEEEEEeC---CCeEEEEEc--CCC--eeE----eEeeccccCeEEEEEcCCCCcEEEE
Q 013282 359 G-NLGAIRSIRYTSDGRYMATAEP---ADFVHVYDV--KSG--YEK----EQEIDFFGEISGISFSPDTESLFIG 421 (446)
Q Consensus 359 ~-~~~~v~~l~~s~dg~~l~~~~~---dg~i~iwd~--~~~--~~~----~~~~~~~~~v~~~~~spdg~~l~~~ 421 (446)
. -.+.|+.+..|+||-.++.-.. .++|.|--+ ..+ ..+ ..+....+.+.++.|..++..++.+
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 1 2357999999999987765432 345555322 122 122 1111123478999999998876665
No 492
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=83.72 E-value=52 Score=33.18 Aligned_cols=211 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecC-CCceeeEEEEeCCCC--CeEEEEEeCCCcEEEEecCcceeeEeee
Q 013282 198 KDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDD-NAITNAVEIYGSPSG--AVHFTASNNDCGVRDFDMGKYQLSKHFR 274 (446)
Q Consensus 198 ~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~~i~~~~s~~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 274 (446)
++..++.+..+|.+....+...+. ......-+. ..+.+++.+ -.+| -.++.+-..|+.+..|.....+.+..+.
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~-~i~i~~~g~~~~~~s~l~~--l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGG-SISITYLGTLCSIASSLTY--LKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEE-EEEEEEEEE--S-ESEEEE--ESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred CCCEEEEEeCCCeEEEEEEEECCC-eEEEEEcCCcCChhheEEE--EcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Q ss_pred CCCCeeEEEECCCC-----------CEEEEEecCCcEEEEECCCCceEE--Ee---------------------------
Q 013282 275 FPWPVNHSSQSPDG-----------KLLIIVGDNPDGLLVDSMTGKTIA--SL--------------------------- 314 (446)
Q Consensus 275 ~~~~v~~~~~sp~~-----------~~l~~~~~d~~i~i~d~~~~~~~~--~~--------------------------- 314 (446)
.-+||..+++-+.. +.++++|....-.+--++.|-... .+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Q ss_pred cCCCCceeEE---------------EECCCCCEEEEEeC---------CCcEEEEEccCCCcceEEEecCCCceEEEEEc
Q 013282 315 CGHLDFSFAS---------------AWHPNGVTFATGNQ---------DKTCRIWDLRNLSESVAVLKGNLGAIRSIRYT 370 (446)
Q Consensus 315 ~~~~~~v~~~---------------~~~p~~~~l~sgs~---------d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s 370 (446)
......|..+ .|..+...|++|.. ...|++.+.................|.+.+..
T Consensus 378 ~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~ 457 (504)
T PF10433_consen 378 FPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN 457 (504)
T ss_dssp ESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES
T ss_pred cCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCeeEeEee-----ccccCeEEEEEcC
Q 013282 371 SDGRYMATAEPADFVHVYDVKSGYEKEQEI-----DFFGEISGISFSP 413 (446)
Q Consensus 371 ~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~sp 413 (446)
+.+++.+-.++.+..+.+.......... .....|.|+...|
T Consensus 458 --~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 458 --DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp --SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred --CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
No 493
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=83.54 E-value=38 Score=31.48 Aligned_cols=70 Identities=26% Similarity=0.394 Sum_probs=52.6
Q ss_pred eeEEEECCCCCEEEEEecCCcEEEEECCCCceEEEecCCCCcee-----EEEECCCCCEEEEEeCCCcEEEEEcc
Q 013282 279 VNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTIASLCGHLDFSF-----ASAWHPNGVTFATGNQDKTCRIWDLR 348 (446)
Q Consensus 279 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-----~~~~~p~~~~l~sgs~d~~v~iwd~~ 348 (446)
++++...++|.+|+++-.-..|.+.|.++|+.+..+.+....=+ ..+|-.+-+++-.+..+++|.++|-.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 78888888999999998889999999999999999976522111 13443344555555678899999973
No 494
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.44 E-value=44 Score=34.68 Aligned_cols=172 Identities=6% Similarity=-0.026 Sum_probs=82.0
Q ss_pred eEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEe--e--e-CCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceE
Q 013282 237 AVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKH--F--R-FPWPVNHSSQSPDGKLLIIVGDNPDGLLVDSMTGKTI 311 (446)
Q Consensus 237 ~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 311 (446)
.+.+-|+.+.. |++-..+|++++|++-... +.. . . ....|..+.+..+| +++-..+|.+.+..-...-.+
T Consensus 86 lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~ 160 (829)
T KOG2280|consen 86 LIGMGWSDDEE--LICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKL 160 (829)
T ss_pred eeeecccCCce--EEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchh
Confidence 34455576654 6667799999999985322 222 1 1 22234444444455 444444556655543222223
Q ss_pred EEecC---CCCceeEEEECCCCC---EEEEEe-CCCcEEEEEccCCCcceEEEecCCCceEEEEEccCCCEEEEEeCCCe
Q 013282 312 ASLCG---HLDFSFASAWHPNGV---TFATGN-QDKTCRIWDLRNLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPADF 384 (446)
Q Consensus 312 ~~~~~---~~~~v~~~~~~p~~~---~l~sgs-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~dg~ 384 (446)
.+++. ..-...|-...+++. .++-.. ..+ ..++-..........+......+..+..||++++|+.=...|.
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~ 239 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK 239 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc
Confidence 33332 111112222222211 111110 000 1122221111222223222356778999999999999999999
Q ss_pred EEEEEcCCCeeEeEeec-cccCeEEEEEcCC
Q 013282 385 VHVYDVKSGYEKEQEID-FFGEISGISFSPD 414 (446)
Q Consensus 385 i~iwd~~~~~~~~~~~~-~~~~v~~~~~spd 414 (446)
|.+-.....+....+.. -..+...++|.-+
T Consensus 240 i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 240 IWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred EEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 99887765544433331 1122335666543
No 495
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.24 E-value=30 Score=30.10 Aligned_cols=57 Identities=19% Similarity=0.411 Sum_probs=41.1
Q ss_pred CEEEEEeCCCcEEEEEcc-CCCcceEEEecCCCceEEEEEccCCCEEEEEeCC---C---eEEEE
Q 013282 331 VTFATGNQDKTCRIWDLR-NLSESVAVLKGNLGAIRSIRYTSDGRYMATAEPA---D---FVHVY 388 (446)
Q Consensus 331 ~~l~sgs~d~~v~iwd~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~~d---g---~i~iw 388 (446)
..|..+...+.|.+|++. ...+++.++.. -+.|..+.++..|.||++-..+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 344444556789999997 33456666665 4789999999999999987643 2 57776
No 496
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=83.23 E-value=70 Score=34.28 Aligned_cols=208 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred EEcCCCCeeeEEEEe-----ecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEE-----------EecCcceeeEeeeCCC
Q 013282 214 KHLDRPGVSFCSRTT-----YDDNAITNAVEIYGSPSGAVHFTASNNDCGVRD-----------FDMGKYQLSKHFRFPW 277 (446)
Q Consensus 214 w~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~i-----------wd~~~~~~~~~~~~~~ 277 (446)
||...........+. ......+..+++.--..|..+-++.-....+.. .-.........+....
T Consensus 1 ~DP~~~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~ 80 (765)
T PF10214_consen 1 YDPTVGSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGS 80 (765)
T ss_pred CCCCcCccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCC
Q ss_pred CeeEEEEC------CCCCEEEEEecCCcEEEEE------CCCC---------ceEEEecCCC---CceeEEEECC-CCCE
Q 013282 278 PVNHSSQS------PDGKLLIIVGDNPDGLLVD------SMTG---------KTIASLCGHL---DFSFASAWHP-NGVT 332 (446)
Q Consensus 278 ~v~~~~~s------p~~~~l~~~~~d~~i~i~d------~~~~---------~~~~~~~~~~---~~v~~~~~~p-~~~~ 332 (446)
+|..|+|. ......+.+-....+.|+. +... .++..+..+. .+...++|+| +...
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q 160 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQ 160 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccce
Q ss_pred EEEEeCCCcEEEEEc----cCCCcceEEEecCCCce------E----EEEEccCCCEEEEEeCCCeEEEEEcCCCee--E
Q 013282 333 FATGNQDKTCRIWDL----RNLSESVAVLKGNLGAI------R----SIRYTSDGRYMATAEPADFVHVYDVKSGYE--K 396 (446)
Q Consensus 333 l~sgs~d~~v~iwd~----~~~~~~~~~~~~~~~~v------~----~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~--~ 396 (446)
||+....|...||++ +.....+.....+.+.+ . .|.|.++...|+.++... +.++|+.+... .
T Consensus 161 ~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~~~~~ 239 (765)
T PF10214_consen 161 FAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-LMLIDFESNWQTEY 239 (765)
T ss_pred EEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc-eEEEECCCCCccch
Q ss_pred eEeeccccCeEEEEEcCC--CCcEEEEE
Q 013282 397 EQEIDFFGEISGISFSPD--TESLFIGV 422 (446)
Q Consensus 397 ~~~~~~~~~v~~~~~spd--g~~l~~~~ 422 (446)
.........|..+.-+|. +..++..+
T Consensus 240 l~~~~~~~~IlDv~~~~~~~~~~FiLTs 267 (765)
T PF10214_consen 240 LVTAKTWSWILDVKRSPDNPSHVFILTS 267 (765)
T ss_pred hccCCChhheeeEEecCCccceEEEEec
No 497
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=82.99 E-value=38 Score=31.43 Aligned_cols=106 Identities=9% Similarity=0.044 Sum_probs=0.0
Q ss_pred EEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEEeCCCcEEEEecCcceeeEeeeCCCCeeEEEECCCCCEE
Q 013282 212 ICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTASNNDCGVRDFDMGKYQLSKHFRFPWPVNHSSQSPDGKLL 291 (446)
Q Consensus 212 ~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l 291 (446)
.++|+.++ .+....-....+..+ .+|+ +-++-+..|.|.-+|..+|+.......++....+.|. |.++
T Consensus 188 ~vidv~s~------evl~~GLsmPhSPRW---hdgr-LwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~ll 255 (335)
T TIGR03032 188 CVIDIPSG------EVVASGLSMPHSPRW---YQGK-LWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFA 255 (335)
T ss_pred EEEEeCCC------CEEEcCccCCcCCcE---eCCe-EEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEE
Q ss_pred EEEecC--------------------CcEEEEECCCCceEEEec--CCCCceeEEEECCC
Q 013282 292 IIVGDN--------------------PDGLLVDSMTGKTIASLC--GHLDFSFASAWHPN 329 (446)
Q Consensus 292 ~~~~~d--------------------~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~p~ 329 (446)
+++-.. .-|.+.|+++|..++.++ +--..++.++.-|.
T Consensus 256 vVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 256 FVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
No 498
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=82.93 E-value=9.8 Score=40.29 Aligned_cols=88 Identities=17% Similarity=0.033 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEecCcceeeEe-eeCCCCeeEEEECCCCCEEEE-EecCC-----cEEEEECC-CCceEEEecCCCC
Q 013282 248 VHFTASNNDCGVRDFDMGKYQLSKH-FRFPWPVNHSSQSPDGKLLII-VGDNP-----DGLLVDSM-TGKTIASLCGHLD 319 (446)
Q Consensus 248 ~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~-~~~d~-----~i~i~d~~-~~~~~~~~~~~~~ 319 (446)
++++..-..+.|.+-|......... +....+|.+-.|||||+.|+. .+..+ .|++-++. ++..+.+|.....
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Q ss_pred ceeEEEECCCCCEEEE
Q 013282 320 FSFASAWHPNGVTFAT 335 (446)
Q Consensus 320 ~v~~~~~~p~~~~l~s 335 (446)
.|..-...++|..+++
T Consensus 400 aiprwrv~e~gdt~iv 415 (912)
T TIGR02171 400 AIPRWRVLENGDTVIV 415 (912)
T ss_pred cccceEecCCCCeEEE
No 499
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=82.37 E-value=65 Score=33.33 Aligned_cols=205 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred EEEeCCcEEEEeccCCcEEEEEcCCCCeeeEEEEeecCCCceeeEEEEeCCCCCeEEEEE-eCCCcEEEEecCcc-----
Q 013282 194 TLAVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYGSPSGAVHFTAS-NNDCGVRDFDMGKY----- 267 (446)
Q Consensus 194 ~l~~~~~~l~tg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~i~~~~s~~~~~~l~s~-s~dg~v~iwd~~~~----- 267 (446)
.+.++.+.+-.|=....|.-|=+ .+.+.......-.....|.|+++.-..++..+.+.| ...+.-++.-+.++
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi-~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYII-KPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred ccCCCCceEEEEeccchhhheec-CCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Q ss_pred --------eeeEeeeCCCCeeEEEECCCCCEEEEEecCCcEEEEEC---------CCCceEEEecCCCCceeEEEECCCC
Q 013282 268 --------QLSKHFRFPWPVNHSSQSPDGKLLIIVGDNPDGLLVDS---------MTGKTIASLCGHLDFSFASAWHPNG 330 (446)
Q Consensus 268 --------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~---------~~~~~~~~~~~~~~~v~~~~~~p~~ 330 (446)
.....+.....|-.+.|.++++.+++...+|.|.+||. .....-..-..+...|.....-...
T Consensus 113 ~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~ 192 (670)
T PF10395_consen 113 DGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGK 192 (670)
T ss_pred ccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCC
Q ss_pred CEEEEEeC-CC---cEEEEEccCCCcceEEEe---cCCCceEEEEEccCCCEEEEEeCCCeEEEEEcCCCeeEeEee
Q 013282 331 VTFATGNQ-DK---TCRIWDLRNLSESVAVLK---GNLGAIRSIRYTSDGRYMATAEPADFVHVYDVKSGYEKEQEI 400 (446)
Q Consensus 331 ~~l~sgs~-d~---~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~s~dg~~l~~~~~dg~i~iwd~~~~~~~~~~~ 400 (446)
.++++-+. .+ +.+++.+......+..+. .+.......+|+-+...|..= .++.|.+|.+.+.+...++.
T Consensus 193 ~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 193 DLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred ceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEE
No 500
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.25 E-value=41 Score=31.00 Aligned_cols=233 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEEeCCcEEEEeccCCcEEEEEcC-----CCCeeeEEEEeecCC----CceeeEEEEeCCCCCeE------------EE
Q 013282 193 STLAVKDKLLVAGGFQGELICKHLD-----RPGVSFCSRTTYDDN----AITNAVEIYGSPSGAVH------------FT 251 (446)
Q Consensus 193 ~~l~~~~~~l~tg~~dg~i~vw~~~-----~~~~~~~~~~~~~~~----~~v~~i~~~~s~~~~~~------------l~ 251 (446)
.++.+.+.+-++....+...+|+.. .........+..... +..+.+.| +.... + ++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVf--N~~~~-F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVF--NGSDT-FVVSGEGITGPSRFL 104 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEE--eCCCc-eEEcCCCcccceeEE
Q ss_pred EEeCCCcEEEEec--------CcceeeEeeeCCCCeeEEEECCC--CCEEEEEe-cCCcEEEEECCCCceEEEecCCCCc
Q 013282 252 ASNNDCGVRDFDM--------GKYQLSKHFRFPWPVNHSSQSPD--GKLLIIVG-DNPDGLLVDSMTGKTIASLCGHLDF 320 (446)
Q Consensus 252 s~s~dg~v~iwd~--------~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 320 (446)
.++.||+|.-|.. .....+..-....--..+++.+. +.+|..+. .+++|-++| .+-+++..-....++
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd-~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK-GSFRPPPLPGSFIDP 183 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec-CccccccCCCCccCC
Q ss_pred eeEEEECC------CCCEEEE-------------EeCCCcEEEEEccCCCcceEEEe--cCCCceEEEEEcc------CC
Q 013282 321 SFASAWHP------NGVTFAT-------------GNQDKTCRIWDLRNLSESVAVLK--GNLGAIRSIRYTS------DG 373 (446)
Q Consensus 321 v~~~~~~p------~~~~l~s-------------gs~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~l~~s~------dg 373 (446)
-.-.-|.| .++++++ |.--|.|-++|+ . +..++.+. +.-...+.|+..| .|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-N-GQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-C-CcEEEEeccCCcccCCceeeeChhhhCCCCC
Q ss_pred CEEEEEeCCCeEEEEEcCCCeeEeEeecccc------CeEEEEEcC------CCCcEEEEEecCCcceEE
Q 013282 374 RYMATAEPADFVHVYDVKSGYEKEQEIDFFG------EISGISFSP------DTESLFIGVWDRTYGSLL 431 (446)
Q Consensus 374 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~sp------dg~~l~~~~~D~~~~~~l 431 (446)
.+|+---.||+|..||..++..+-++....+ .+.+|.|-. ...+.++++-+...-.++
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~de~~Gl~ 331 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDDEQHGLF 331 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCCccccce
Done!