Query 013283
Match_columns 446
No_of_seqs 165 out of 197
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzz_A Protein-glutamine gamma 96.7 0.0037 1.3E-07 51.9 7.1 72 334-413 11-82 (102)
2 3hrz_B Cobra venom factor; ser 96.2 0.036 1.2E-06 53.1 11.8 96 308-413 64-163 (252)
3 1vjj_A Protein-glutamine gluta 96.2 0.16 5.5E-06 55.1 17.8 187 195-413 481-671 (692)
4 1ex0_A Coagulation factor XIII 96.2 0.065 2.2E-06 58.4 14.8 227 155-413 452-706 (731)
5 3idu_A Uncharacterized protein 95.0 0.21 7.3E-06 42.8 10.9 81 323-414 14-94 (127)
6 1g0d_A Protein-glutamine gamma 93.3 0.18 6.2E-06 54.6 8.4 187 195-413 472-662 (695)
7 2q3z_A Transglutaminase 2; tra 92.5 0.16 5.5E-06 55.1 6.6 175 205-413 485-665 (687)
8 3es6_B Prolactin-inducible pro 91.8 0.49 1.7E-05 40.1 7.5 80 325-414 5-84 (118)
9 4acq_A Alpha-2-macroglobulin; 90.7 3.2 0.00011 49.0 15.5 85 321-413 762-848 (1451)
10 4fxk_B Complement C4-A alpha c 90.5 0.47 1.6E-05 52.1 7.8 84 323-414 149-234 (767)
11 3prx_B Cobra venom factor; imm 90.4 1.4 4.8E-05 52.6 12.2 82 324-413 810-895 (1642)
12 2qsv_A Uncharacterized protein 89.8 10 0.00034 34.9 15.3 127 93-229 11-156 (220)
13 2hr0_B Complement C3 alpha' ch 89.8 1.2 4E-05 50.1 10.4 83 323-413 76-163 (915)
14 2ys4_A Hydrocephalus-inducing 88.8 2.5 8.5E-05 35.2 9.4 86 79-174 17-104 (122)
15 2b39_A C3; thioester, immune d 88.1 1.9 6.4E-05 51.6 11.1 82 324-413 824-910 (1661)
16 2xzz_A Protein-glutamine gamma 87.2 1.5 5E-05 36.1 6.8 73 95-173 14-86 (102)
17 2pn5_A TEP1R, thioester-contai 86.7 2.7 9.4E-05 48.9 11.2 82 324-412 662-749 (1325)
18 1vjj_A Protein-glutamine gluta 82.2 2.8 9.6E-05 45.5 7.9 72 325-404 479-556 (692)
19 2l0d_A Cell surface protein; s 82.1 14 0.00047 30.9 10.6 79 326-414 3-82 (114)
20 1ex0_A Coagulation factor XIII 80.1 3.1 0.00011 45.4 7.4 71 326-405 516-592 (731)
21 3cu7_A Complement C5; Mg domai 79.8 2 6.8E-05 51.4 6.4 81 324-412 819-910 (1676)
22 2e6j_A Hydin protein; PAPD, st 77.7 2.6 8.9E-05 34.1 4.7 71 93-172 18-92 (112)
23 1g0d_A Protein-glutamine gamma 77.1 4.6 0.00016 43.8 7.5 71 325-404 470-546 (695)
24 2ys4_A Hydrocephalus-inducing 77.0 7.8 0.00027 32.1 7.6 64 339-414 37-100 (122)
25 3qbt_B Inositol polyphosphate 72.8 9.8 0.00034 32.6 7.3 83 339-426 39-129 (140)
26 3isy_A Bsupi, intracellular pr 71.1 24 0.00083 29.6 9.1 92 99-192 16-119 (120)
27 2q3z_A Transglutaminase 2; tra 70.0 12 0.0004 40.7 8.6 74 93-173 593-669 (687)
28 1z9l_A Vesicle-associated memb 66.1 17 0.00057 30.5 7.2 53 343-405 27-79 (128)
29 3isy_A Bsupi, intracellular pr 64.8 52 0.0018 27.6 9.9 82 325-414 4-99 (120)
30 1msp_A MSP, major sperm protei 64.8 19 0.00063 30.3 7.2 54 345-408 27-80 (126)
31 1m1s_A WR4; structural genomic 64.0 17 0.00059 30.4 6.7 50 346-405 26-75 (116)
32 1row_A SSP-19, MSP-domain prot 63.0 13 0.00045 30.6 5.8 49 346-404 18-66 (109)
33 3ugu_A S-arrestin; arrestin fo 62.2 17 0.00057 36.6 7.4 88 324-417 209-305 (380)
34 2icn_B Prolactin-inducible pro 60.3 20 0.00068 30.1 6.5 67 333-406 12-78 (118)
35 1suj_A CONE arrestin; sensory 59.6 34 0.0012 34.6 9.2 81 324-407 190-276 (392)
36 3idu_A Uncharacterized protein 59.5 53 0.0018 27.6 9.1 73 96-176 28-100 (127)
37 2g30_A AP-2 complex subunit be 59.0 24 0.00083 33.5 7.7 79 301-404 33-111 (258)
38 2cri_A Vesicle-associated memb 57.3 22 0.00075 30.6 6.5 52 344-405 32-83 (147)
39 2l0d_A Cell surface protein; s 57.1 61 0.0021 26.8 8.9 72 97-175 15-87 (114)
40 3ugu_A S-arrestin; arrestin fo 55.0 20 0.00069 36.0 6.5 30 97-126 224-253 (380)
41 3qbt_B Inositol polyphosphate 53.7 33 0.0011 29.3 7.0 75 93-172 35-123 (140)
42 2e6j_A Hydin protein; PAPD, st 52.6 36 0.0012 27.0 6.8 65 339-412 22-88 (112)
43 1suj_A CONE arrestin; sensory 52.3 22 0.00076 35.9 6.4 30 97-126 205-234 (392)
44 2r39_A FIXG-related protein; s 52.3 43 0.0015 27.4 7.3 69 325-404 8-83 (118)
45 2qsv_A Uncharacterized protein 50.2 73 0.0025 28.9 9.2 77 92-177 126-207 (220)
46 3hrz_B Cobra venom factor; ser 49.4 73 0.0025 29.8 9.3 79 88-173 86-167 (252)
47 1wic_A Hypothetical protein ri 47.9 30 0.001 30.0 5.8 51 346-406 38-88 (152)
48 3es6_B Prolactin-inducible pro 44.0 1.3E+02 0.0044 25.0 8.9 78 87-174 11-88 (118)
49 3qis_A Inositol polyphosphate 40.8 65 0.0022 31.9 7.8 83 339-426 42-132 (366)
50 1g4m_A Beta-arrestin1; sensory 39.1 84 0.0029 31.5 8.4 83 323-408 192-280 (393)
51 2r5o_A Putative ATP binding co 36.2 79 0.0027 27.9 6.9 72 336-414 63-143 (188)
52 3hs8_A Adaptor protein complex 35.5 46 0.0016 31.8 5.4 76 97-176 64-142 (273)
53 2d7p_A Filamin-C; beta-sandwic 35.0 61 0.0021 26.4 5.5 64 95-172 22-85 (112)
54 2kut_A Uncharacterized protein 33.1 22 0.00076 30.0 2.4 70 334-407 7-78 (122)
55 4fxk_B Complement C4-A alpha c 29.3 3.6E+02 0.012 28.9 12.0 78 89-173 159-237 (767)
56 1kyf_A Alpha-adaptin C; protei 27.5 93 0.0032 29.0 6.0 77 97-177 38-117 (247)
57 3zy7_A AP-1 complex subunit ga 26.9 2.6E+02 0.0091 22.9 9.7 71 103-177 31-103 (122)
58 2icn_B Prolactin-inducible pro 26.9 1.7E+02 0.006 24.2 6.9 38 87-130 11-48 (118)
59 1row_A SSP-19, MSP-domain prot 21.9 2.4E+02 0.0083 22.8 6.8 59 104-171 18-77 (109)
60 2huh_A Putative DNA mismatch r 21.3 1.5E+02 0.0052 25.6 5.7 64 324-398 7-70 (147)
No 1
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=96.70 E-value=0.0037 Score=51.91 Aligned_cols=72 Identities=6% Similarity=0.138 Sum_probs=60.9
Q ss_pred ecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013283 334 EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT 413 (446)
Q Consensus 334 ~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is 413 (446)
+++...++++|+.+++.++|--...+..-.+.++... + ..+ ....++.+.|+++..+.+.+.|..+|-++|-
T Consensus 11 ~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~G------L-~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~ 82 (102)
T 2xzz_A 11 TLLGAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSG------L-QRP-KILNVGDIGGNETVTLRQSFVPVRPGPRQLI 82 (102)
T ss_dssp EESSCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETT------T-EEE-EEEEECCBCTTCEEEEEEEECCCSCSSCCCE
T ss_pred EECCCcccCCeEEEEEEEECCCCCcccCEEEEEECCC------C-Ccc-eEEEcCcCCCCCEEEEEEEEecCcccceEEE
Confidence 5677778999999999999997777777888888764 3 344 5677899999999999999999999998874
No 2
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=96.22 E-value=0.036 Score=53.11 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=72.2
Q ss_pred CCCeeeeEEeeeeccCCCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc----
Q 013283 308 GEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR---- 383 (446)
Q Consensus 308 Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s---- 383 (446)
++.|.-.+. .......+++-+. .++|-.++-++-|.+.+.|.|+.++.+. +.|.|..++ ++...+..
T Consensus 64 ~~~G~g~~~--~~~i~v~kpffv~-~~LP~sv~rGE~~~l~~~V~Ny~~~~~~-v~V~l~~~~-----~~~~~~~~~~~~ 134 (252)
T 3hrz_B 64 PTKGICVAE--PYEIRVMKVFFID-LQMPYSVVKNEQVEIRAILHNYVNEDIY-VRVELLYNP-----AFCSASTKGQRY 134 (252)
T ss_dssp TTTEEEECC--CEEEEBCCSEEEE-ECCCSCEETTCCEEEEEEEEECSSSCEE-EEEEECCCT-----TEEESCCSSCCE
T ss_pred CCCCeeecc--ceeEEEECCEEEE-cCCCcEEeeCCEEEEEEEEEcccCceEE-EEEEEEcCC-----ceEeecCCCCce
Confidence 445654322 1234566777666 4999999999999999999999999887 888887654 56665432
Q ss_pred ceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013283 384 IMALAPVEAFGSTDFHLNLIATKLGVQRIT 413 (446)
Q Consensus 384 ~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is 413 (446)
.+.+ .|.++++..+.|.+.|...|.+.|.
T Consensus 135 ~~~v-~v~a~~~~~v~f~i~p~~~G~~~i~ 163 (252)
T 3hrz_B 135 RQQF-PIKALSSRAVPFVIVPLEQGLHDVE 163 (252)
T ss_dssp EEEE-EECTTEEEEEEEEEEECSSEEEEEE
T ss_pred EEEE-EECCCCeEEEEEEEEeccCCcEEEE
Confidence 2223 6899999999999999999987764
No 3
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=96.19 E-value=0.16 Score=55.11 Aligned_cols=187 Identities=11% Similarity=0.139 Sum_probs=109.5
Q ss_pred CeEEEEEEE---EeCCeeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCCCCCCCCCccccc-CCceEEeCCCCe
Q 013283 195 PLSVRTKVR---VVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIF-KPPVLIRSGGGI 270 (446)
Q Consensus 195 PL~VrTK~~---~~~~~~~LEaqIqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~-~~~~l~l~~gd~ 270 (446)
++.++-|.. .+++++-|.+.+.|.|+..-. +.+.. .+..+-- .+.... .+. ....+.++|++.
T Consensus 481 ~v~~~~~~~~~~~~G~df~v~l~~~N~s~~~~~---v~~~l----~a~~v~Y---tG~~~~---~~~~~~~~v~L~p~~~ 547 (692)
T 1vjj_A 481 SIIGKLKVAGMLAVGKEVNLVLLLKNLSRDTKT---VTVNM----TAWTIIY---NGTLVH---EVWKDSATMSLDPEEE 547 (692)
T ss_dssp SEEEEEEECSCCBTTSCEEEEEEEEECSSSCEE---EEEEE----EEEEECT---TCCEEE---EEEEEEEEEEECTTCE
T ss_pred CeEEEEEcCCCCCCCCCEEEEEEEEECCCCCEE---EEEEE----EEEEEee---CCcccc---ceEEeeEEEEECCCce
Confidence 445544432 247899999999999987632 22221 1111100 000000 111 112455677787
Q ss_pred eeEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCeeeeEEeeeeccCCCCCeEEEEEecCceEEeCCcEEEEEE
Q 013283 271 HNYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLK 350 (446)
Q Consensus 271 ~q~lf~L~p~~~~~~~~~~~~g~~~lGkL~I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~ 350 (446)
...-..|....-.. ....+.. +=-.-+..-...++ .+..--+ .....+|.| ++|...++++|+.+++.
T Consensus 548 ~~i~~~i~y~~Y~~--~L~d~~~--i~~~a~~~v~et~~--~~~~~di---~l~~P~l~I---~v~g~~~v~~~l~v~v~ 615 (692)
T 1vjj_A 548 AEHPIKISYAQYER--YLKSDNM--IRITAVCKVPDESE--VVVERDI---ILDNPTLTL---EVLNEARVRKPVNVQML 615 (692)
T ss_dssp EEEEEEECHHHHHT--TCCTTCE--EEEEEEEECTTSCC--EEEEEEE---ECBCCCEEE---EECSCCBTTSCEEEEEE
T ss_pred EEEEEEECHHHHhh--hcccCCe--EEEEEEEEECCCce--EEEEEEE---EEcCCCEEE---EeCCCcccCCeEEEEEE
Confidence 77776666654111 0111111 11112233333333 2222222 234445544 46777789999999999
Q ss_pred EEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013283 351 LTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT 413 (446)
Q Consensus 351 v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is 413 (446)
++|.-...+..-.+.++... +..+.....++.|.|+++..+.+.+.|..+|.++|-
T Consensus 616 f~NPL~~~L~~c~~~vEG~G-------L~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~ 671 (692)
T 1vjj_A 616 FSNPLDEPVRDCVLMVEGSG-------LLLGNLKIDVPTLGPKERSRVRFDILPSRSGTKQLL 671 (692)
T ss_dssp EECCSSSCBCSEEEEEECTT-------TSSSCEEEEECCBCTTCEEEEEEEECCCSCEEEEEE
T ss_pred EECCCCCcccceEEEEECCC-------CCCCceEEEcCccCCCCEEEEEEEEEeccccceEEE
Confidence 99997777776888887753 234556678899999999999999999999999974
No 4
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=96.19 E-value=0.065 Score=58.40 Aligned_cols=227 Identities=13% Similarity=0.058 Sum_probs=126.2
Q ss_pred EEEEEcccccceEEEEEE----------EEEeCCC---ceeecCeEEEE----------Ee--ecCeEEEEEEE--EeCC
Q 013283 155 IVEHDVKELGAHTLVCTA----------LYSDGEG---ERKYLPQFFKF----------IV--SNPLSVRTKVR--VVKE 207 (446)
Q Consensus 155 iv~~~lke~G~h~L~c~V----------sY~~~~g---e~~~frK~ykF----------~v--~~PL~VrTK~~--~~~~ 207 (446)
.++.+-+.+|..|.+=+| .|.-++| |+..|.|-.++ .- ..++.++-|.- .+++
T Consensus 452 ~~~~~t~~VG~~ISTKaVG~d~ReDIT~~YKypEGS~eER~~~~kA~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~iG~ 531 (731)
T 1ex0_A 452 VENVDATHIGKLIVTKQIGGDGMMDITDTYKFQEGQEEERLALETALMYGAKKPLNTSRSMKSRSNVDMDFEVENAVLGK 531 (731)
T ss_dssp EEEEECSSTTCEEEEECSSSSCEEECHHHHCCCTTSHHHHHHHHHHHTTTCBCCSCCCCC-----CEEEEEEECCCBTTC
T ss_pred EEeeccccccceEeccCCCCCCcccccccCcCCCCCHHHHHHHHHHHhhcccccccccccccCCCCeEEEEecCCCCCCC
Confidence 466777777887777665 4444444 22223222221 00 12344444442 2367
Q ss_pred eeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCCCCCCCCCccccc-CCceEEeCCCCeeeEEEEEeecCCCCCC
Q 013283 208 ITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIF-KPPVLIRSGGGIHNYLYQLKMLSHGSSS 286 (446)
Q Consensus 208 ~~~LEaqIqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~-~~~~l~l~~gd~~q~lf~L~p~~~~~~~ 286 (446)
++-|.+.|.|.|...- .+.+.. .+..+-- .+.... .+. ..-.+.++|++....-..|....-..
T Consensus 532 df~v~l~~~N~s~~~~---~v~~~l----~a~~v~Y---tG~~~~---~~~~~~~~~~L~p~~~~~i~~~i~y~~Y~~-- 596 (731)
T 1ex0_A 532 DFKLSITFRNNSHNRY---TITAYL----SANITFY---TGVPKA---EFKKETFDVTLEPLSFKKEAVLIQAGEYMG-- 596 (731)
T ss_dssp CEEEEEEEEECSSSCE---EEEEEE----EEEEECT---TSCEEE---EEEEEEEEEEECTTEEEEEEEEECHHHHTT--
T ss_pred CEEEEEEEEECCCCCE---EEEEEE----EEEEEee---CCcccc---ceeEeeEEEEECCCceEEEEEEECHHHHhh--
Confidence 8999999999998762 222221 1111100 000000 011 11145567777777776676654211
Q ss_pred CccccCceeeEEEEEEEEcCCCCCeeeeEEeeeeccCCCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEE
Q 013283 287 PVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWL 366 (446)
Q Consensus 287 ~~~~~g~~~lGkL~I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l 366 (446)
....+.. +=-.-+..-...++.-.-+ --+ .....+|.|.+ |...++++|+.+++.++|--...+..-.+.+
T Consensus 597 ~L~d~~~--i~~~a~~~v~et~~~~~~~-~di---~l~~P~l~I~v---~g~~~v~~~l~v~vsf~NPL~~~L~~c~~~v 667 (731)
T 1ex0_A 597 QLLEQAS--LHFFVTARINETRDVLAKQ-KST---VLTIPEIIIKV---RGTQVVGSDMTVTVQFTNPLKETLRNVWVHL 667 (731)
T ss_dssp TCCTTCE--EEEEEEEEETTTCCEEEEE-EEE---ECBCCCCEEEE---EECCBTTSCEEEEEEEECCSSSCEEEEEEEE
T ss_pred hccCCCE--EEEEEEEEECCCCeEEEEE-EEE---EEeCCCEEEEe---CCCcccCCeEEEEEEEECCCCCcccceEEEE
Confidence 0111111 1111222223222211111 111 24455565554 4556899999999999999777777678888
Q ss_pred EeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeC
Q 013283 367 SQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRIT 413 (446)
Q Consensus 367 ~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~is 413 (446)
+... + ..+ ....++.|.|+++..+.+.+.|..+|.++|-
T Consensus 668 EG~G------L-~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~r~L~ 706 (731)
T 1ex0_A 668 DGPG------V-TRP-MKKMFREIRPNSTVQWEEVCRPWVSGHRKLI 706 (731)
T ss_dssp EETT------T-EEE-EEEEEEEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred ECCC------C-Cce-eeEecCccCCCCEEEEEEEEEeccccceEEE
Confidence 7753 3 344 5678999999999999999999999999974
No 5
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=95.01 E-value=0.21 Score=42.84 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=62.8
Q ss_pred CCCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEE
Q 013283 323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNL 402 (446)
Q Consensus 323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l 402 (446)
...+||.+.+ ..|+.+..+++.+++++|+|.-......+.|.+--+. - ..+.. .+ .|.+|++.++.++.
T Consensus 14 ~~~pDL~V~i-s~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng------~-~v~t~--~v-~La~G~s~tv~f~~ 82 (127)
T 3idu_A 14 FEFPDLTVEI-KGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYING------T-LYKNW--TV-SLGPKEEKVLTFNW 82 (127)
T ss_dssp CSSCCEEEEE-ESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETT------E-EEEEE--EE-EECTTCEEEEEEEE
T ss_pred ccCCCeEEEe-cCCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECC------E-EEeeE--Ee-ccCCCCeEEEEEEE
Confidence 6788888865 5899999999999999999997666666777776553 1 22322 33 48999999999999
Q ss_pred EecccceEEeCc
Q 013283 403 IATKLGVQRITG 414 (446)
Q Consensus 403 ~pl~~Glq~isg 414 (446)
-|...|-+.|..
T Consensus 83 ~~~~~G~~~v~A 94 (127)
T 3idu_A 83 TPTQEGMYRINA 94 (127)
T ss_dssp CCSSCEEEEEEE
T ss_pred EcCCCcEEEEEE
Confidence 998888877654
No 6
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=93.31 E-value=0.18 Score=54.63 Aligned_cols=187 Identities=12% Similarity=0.081 Sum_probs=106.8
Q ss_pred CeEEEEEEE--EeCCeeEEEEEEEecCcccEEEEeEEeeecCCcceeeecCCCCCCCCCCCccccc-CCceEEeCCCCee
Q 013283 195 PLSVRTKVR--VVKEITFLEACIENHTKSNLYMDQVEFEPSQNWSATMLKADGPHSDYNAQSREIF-KPPVLIRSGGGIH 271 (446)
Q Consensus 195 PL~VrTK~~--~~~~~~~LEaqIqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~-~~~~l~l~~gd~~ 271 (446)
++.++-|.. .+++++-|.+.+.|.|+..- .+.+.. .+..+--.+.. .. .+. ..-.+.++|++..
T Consensus 472 ~v~~~i~~~~~~~G~df~v~v~~~N~s~~~~---~v~~~l----~a~~v~YtG~~---~~---~~~~~~~~~~L~p~~~~ 538 (695)
T 1g0d_A 472 RLQLSIKHAQPVFGTDFDVIVEVKNEGGRDA---HAQLTM----LAMAVTYNSLR---RG---ECQRKTISVTVPAHKAH 538 (695)
T ss_dssp CEEEEEEECCCBTTCCEEEEEEEEECSSSCE---EEEEEE----EEEEECTTCBC---CC---CCCEEEEEEEECTTEEE
T ss_pred CeEEEEEeCCCCCCCCEEEEEEEEECCCCCE---EEEEEE----EEEEEeeCCcc---cC---ceeEeeEEEEECCCceE
Confidence 444544431 15789999999999998763 232221 11111000100 00 111 1124557777887
Q ss_pred eEEEEEeecCCCCCCCccccCceeeEEEEEEEEcCCCCCeeeeEEeeeeccCCCCCeEEEEEecCceEEeCCcEEEEEEE
Q 013283 272 NYLYQLKMLSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKL 351 (446)
Q Consensus 272 q~lf~L~p~~~~~~~~~~~~g~~~lGkL~I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v 351 (446)
..-..|....-.. ....+... ++... ..-.|.+.--..+ .--.....+|.| ++|...++++|+.+++.+
T Consensus 539 ~v~~~i~y~~Y~~--~L~d~~~i---~~~a~--~~v~et~~~~~~~-~di~l~~P~l~I---~v~g~~~v~~~l~a~vsf 607 (695)
T 1g0d_A 539 KEVMRLHYDDYVR--CVSEHHLI---RVKAL--LDAPGENGPIMTV-ANIPLSTPELLV---QVPGKAVVWEPLTAYVSF 607 (695)
T ss_dssp EEEEEECHHHHTT--TCCTTCEE---EEEEE--EECCC---EEEEE-EEEECBCCCCEE---ECCSCEETTCCEEEEEEE
T ss_pred EEEEEECHHHHhh--hcccCCeE---EEEEE--EEECCCCeEEEEE-EEEEEcCCCEEE---EeCCCcccCCeEEEEEEE
Confidence 7776776654211 11111111 11100 1111222211111 001234445543 578888999999999999
Q ss_pred EeCCCCccccEEEEEEeCCCCCceeEEEecccceee-eeeCCCCeEEEEEEEEecccceEEeC
Q 013283 352 TNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMAL-APVEAFGSTDFHLNLIATKLGVQRIT 413 (446)
Q Consensus 352 ~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~L-g~L~P~~s~~~~L~l~pl~~Glq~is 413 (446)
+|.-...+..-.+.++... + ..+ ....+ +.|.|+++..+.+.+.|..+|.++|-
T Consensus 608 ~NPL~~~L~~c~~~vEG~G------L-~~~-~~~~~~~~v~Pg~~~~~~~~~~P~~~G~r~L~ 662 (695)
T 1g0d_A 608 TNPLPVPLKGGVFTLEGAG------L-LSA-TQIHVNGAVAPSGKVSVKLSFSPMRTGVRKLL 662 (695)
T ss_dssp ECCSSSCEESCEEEEEETT------T-EEE-EEEECSSEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred ECCCCCcccceEEEEECCC------C-Ccc-eEEecCCCcCCCCEEEEEEEEEcCCccceEEE
Confidence 9997777766788887753 3 334 56677 89999999999999999999999874
No 7
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=92.51 E-value=0.16 Score=55.11 Aligned_cols=175 Identities=10% Similarity=0.055 Sum_probs=102.9
Q ss_pred eCCeeEEEEEEEecCcccEEEEeEEeeecC---CcceeeecCCCCCCCCCCCcccc-cC-CceEEeCCCCeeeEEEEEee
Q 013283 205 VKEITFLEACIENHTKSNLYMDQVEFEPSQ---NWSATMLKADGPHSDYNAQSREI-FK-PPVLIRSGGGIHNYLYQLKM 279 (446)
Q Consensus 205 ~~~~~~LEaqIqN~s~~pl~Le~v~lep~~---~~~~~~ln~~~~~~~~~~~~~~~-~~-~~~l~l~~gd~~q~lf~L~p 279 (446)
+++++-|.+.++|.|...- .+.+.... .|+-.. . ..+ ++ .-.+.++|++....-..|..
T Consensus 485 ~G~df~v~v~~~N~s~~~~---~v~~~l~a~~v~YtG~~----------~---~~~~~~~~~~~~l~p~~~~~v~~~i~y 548 (687)
T 2q3z_A 485 MGSDFDVFAHITNNTAEEY---VCRLLLCARTVSYNGIL----------G---PECGTKYLLNLTLEPFSEKSVPLCILY 548 (687)
T ss_dssp TTCCEEEEEEEEECSSSCE---EEEEEEEEEEECTTCCE----------E---EEEEEEEEEEEEECTTEEEEEEEEECH
T ss_pred CCCCEEEEEEEEECCCCCE---EEEEEEEEEEEeeCCcc----------c---ceEeeeeeeEEEECCCceEEEEEEECH
Confidence 3788999999999998762 23222111 121110 0 011 11 11345677777777777776
Q ss_pred cCCCCCCCccccCceeeEEEEEEEEcCCCCCeeeeEEeeeeccCCCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCcc
Q 013283 280 LSHGSSSPVKVQGSNVLGKLQITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQ 359 (446)
Q Consensus 280 ~~~~~~~~~~~~g~~~lGkL~I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~ 359 (446)
..-.. ....+....+ .-+.+-. |.+.--..+ .--.....+|.|. +|...++++|+.+++.++|--...+
T Consensus 549 ~~Y~~--~L~d~~~i~~--~a~~~v~---et~~~~~~~-~di~l~~P~l~I~---v~g~~~v~~~~~v~v~f~NPL~~~L 617 (687)
T 2q3z_A 549 EKYRD--CLTESNLIKV--RALLVEP---VINSYLLAE-RDLYLENPEIKIR---ILGEPKQKRKLVAEVSLQNPLPVAL 617 (687)
T ss_dssp HHHTT--TCCTTCEEEE--EEEEEET---TTTEEEEEE-EEEECBCCCCEEE---EESCCSSSSCEEEEEEEECCSSSCB
T ss_pred HHHhh--hccCCCEEEE--EEEEEEC---CCCeEEEEE-EEEEEeCCCEEEE---eCCCcccCCeEEEEEEEECCCCCcc
Confidence 54211 1111111111 1222222 222211111 0112445556555 4566688999999999999977777
Q ss_pred ccEEEEEEeCCCCCceeEEEecccceee-eeeCCCCeEEEEEEEEecccceEEeC
Q 013283 360 GPFEIWLSQNDSDEEKVVMINGLRIMAL-APVEAFGSTDFHLNLIATKLGVQRIT 413 (446)
Q Consensus 360 ~~l~v~l~~~~~~~~~~~~~~G~s~~~L-g~L~P~~s~~~~L~l~pl~~Glq~is 413 (446)
..-.+.++... +..+.....+ +.|.|+++.++.+.+.|..+|.++|-
T Consensus 618 ~~c~~~vEG~G-------L~~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L~ 665 (687)
T 2q3z_A 618 EGCTFTVEGAG-------LTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKLV 665 (687)
T ss_dssp CSEEEEEECTT-------TCSSCEEEEECSCBCTTCEEEEEEEECCCSSSCEEEE
T ss_pred cceEEEEECCC-------CCCCceEEecCCCcCCCCEEEEEEEEEeccccceEEE
Confidence 76788887754 2334355677 89999999999999999999999974
No 8
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=91.80 E-value=0.49 Score=40.07 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=57.4
Q ss_pred CCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEe
Q 013283 325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA 404 (446)
Q Consensus 325 ~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~p 404 (446)
.+++-+. .++|-.+.-++-|.+...|.|+-+..|. +.+.|..+. .|-......... -|-++...+|.|.+.|
T Consensus 5 ~k~~~~~-l~lPysv~rgE~~~~~~~V~nyl~~~~~-v~v~L~~s~-----~~~~~~~~~~t~-Clc~~~~~t~~W~i~~ 76 (118)
T 3es6_B 5 RKIIIKN-FDIPKSVRPNDEVTAVLAVQTELKECMV-VKTYLISSI-----PLQGAFNYKYTA-CLCDDNPKTFYWDFYT 76 (118)
T ss_dssp CCCCEEC-CCCCSEECSSCCEEEEEEEEECCSSCEE-EEEEEEESS-----CCCSGGGCEEEE-EECSSSCEEEEEEECC
T ss_pred cceEEEE-eeCCceEecCCEEEEEEEEEecccceEE-EEEEecCCc-----CEEccCCCcccE-EecCCCceEEEEEEEe
Confidence 3455444 4899999999999999999999888888 888888765 221111111222 4788999999999988
Q ss_pred cccceEEeCc
Q 013283 405 TKLGVQRITG 414 (446)
Q Consensus 405 l~~Glq~isg 414 (446)
+ |-..|..
T Consensus 77 l--g~vniTv 84 (118)
T 3es6_B 77 N--RTVQIAA 84 (118)
T ss_dssp S--SCEEEEE
T ss_pred C--CeEEEEE
Confidence 5 6555443
No 9
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=90.65 E-value=3.2 Score=49.02 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=67.4
Q ss_pred ccCCCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc--ceeeeeeCCCCeEEE
Q 013283 321 TTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR--IMALAPVEAFGSTDF 398 (446)
Q Consensus 321 ~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s--~~~Lg~L~P~~s~~~ 398 (446)
.....+++-+. .++|-.+.-++-|.+.+.|.|+.+..+. +.|.|..++ ++.+.+.. ...+ .|.++++..+
T Consensus 762 ~v~v~kpf~v~-~~LP~sv~rGE~~~l~~~V~N~~~~~~~-v~V~l~~~~-----~~~~~~~~~~~~~v-~l~~~~~~~v 833 (1451)
T 4acq_A 762 SLRAFQPFFVE-LTMPYSVIRGEAFTLKATVLNYLPKCIR-VSVQLEASP-----AFLAVPVEKEQAPH-CICANGRQTV 833 (1451)
T ss_dssp EECCBCSEEEE-EECCSEEESSSCEEEEEEEEECSSSCEE-EEEEECCCT-----TEEEEESCSCCCCE-EECTTEEEEE
T ss_pred EEEEECCEEEE-ccCCceEecCCEEEEEEEEEeccCccEE-EEEEEEcCC-----CeEeecCCCCceEE-EECCCCeEEE
Confidence 34556777555 4899999999999999999999998887 888887654 56665532 3344 6899999999
Q ss_pred EEEEEecccceEEeC
Q 013283 399 HLNLIATKLGVQRIT 413 (446)
Q Consensus 399 ~L~l~pl~~Glq~is 413 (446)
.|.+.|...|.+.|.
T Consensus 834 ~f~v~p~~~G~~~i~ 848 (1451)
T 4acq_A 834 SWAVTPKSLGNVNFT 848 (1451)
T ss_dssp EEEEEECSCEEEEEE
T ss_pred EEEEEECccceEEEE
Confidence 999999999987763
No 10
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=90.51 E-value=0.47 Score=52.11 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc--ceeeeeeCCCCeEEEEE
Q 013283 323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR--IMALAPVEAFGSTDFHL 400 (446)
Q Consensus 323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s--~~~Lg~L~P~~s~~~~L 400 (446)
...+++-+. .++|-.+..++-|.+.+.|.|+++..+. +.|.|+..+ ++...+.. ...+ .|.++++..+.|
T Consensus 149 ~v~kpf~v~-~~lP~~v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~~~-----~~~~~~~~~~~~~~-~v~a~~~~~v~f 220 (767)
T 4fxk_B 149 RVFREFHLH-LRLPMSVRRFEQLELRPVLYNYLDKNLT-VSVHVSPVE-----GLCLAGGGGLAQQV-LVPAGSARPVAF 220 (767)
T ss_dssp ECCCSEEEE-CCCCSCEETTCEEEECCEEEECSSSCEE-EEEEECCCT-----TEECSSSSCCCEEE-EECSSCEEECCE
T ss_pred EEeccEEEe-cCCCCeeccCCEEEEEEEEEECCCCCEE-EEEEEEecC-----CeEEecCCceeEEE-EEcCCCeEEEEE
Confidence 345666555 5899999999999999999999999887 888887654 55555432 3344 689999999999
Q ss_pred EEEecccceEEeCc
Q 013283 401 NLIATKLGVQRITG 414 (446)
Q Consensus 401 ~l~pl~~Glq~isg 414 (446)
.+.|...|.+.|.-
T Consensus 221 ~i~~~~~G~~~i~v 234 (767)
T 4fxk_B 221 SVVPTAAAAVSLKV 234 (767)
T ss_dssp EEEECSCSEEEEEE
T ss_pred EEEECccCcEEEEE
Confidence 99999999988743
No 11
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=90.35 E-value=1.4 Score=52.61 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecc----cceeeeeeCCCCeEEEE
Q 013283 324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGL----RIMALAPVEAFGSTDFH 399 (446)
Q Consensus 324 ~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~----s~~~Lg~L~P~~s~~~~ 399 (446)
..+++-+. .++|-.+.-++-|.+.+.|.|+.+..+. +.|.|..++ ++...+. ....+ .|.++++..+.
T Consensus 810 v~kpffv~-l~LPysv~rGEq~~l~v~VfNy~~~~~~-V~V~L~~s~-----~~~~~~~~~~~~~q~v-~v~a~~~~~v~ 881 (1642)
T 3prx_B 810 VMKVFFID-LQMPYSVVKNEQVEIRAILHNYVNEDIY-VRVELLYNP-----AFCSASTKGQRYRQQF-PIKALSSRAVP 881 (1642)
T ss_dssp BCCSEEEE-CCCCSCEETTCCEEEEEEEEECSSSCEE-EEEEECCCT-----TEEESCCSSSCCEEEE-EECSSEEEEEE
T ss_pred EECCEEEE-ccCCCEEecCCEEEEEEEEEcCCCCcEE-EEEEEEcCC-----CeEeeccCCCcceeEE-EECCCCeEEEE
Confidence 34444333 4889999999999999999999999887 888887654 5666653 12344 78999999999
Q ss_pred EEEEecccceEEeC
Q 013283 400 LNLIATKLGVQRIT 413 (446)
Q Consensus 400 L~l~pl~~Glq~is 413 (446)
|.+.|...|.+.|.
T Consensus 882 f~i~p~~~G~~~i~ 895 (1642)
T 3prx_B 882 FVIVPLEQGLHDVE 895 (1642)
T ss_dssp EEEEECSCEEEEEE
T ss_pred EEEEEeecccEEEE
Confidence 99999999988753
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=89.83 E-value=10 Score=34.88 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=81.6
Q ss_pred cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccc---cceEEE
Q 013283 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKEL---GAHTLV 169 (446)
Q Consensus 93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~---G~h~L~ 169 (446)
.||.+-.|+.=...+.+.|.++.+++=..++ .++- ... . ..-..|+||+.-+..|.|+-+.. |.+.=.
T Consensus 11 dFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~----~p~~-~~~-~---~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~ 81 (220)
T 2qsv_A 11 LFPISMPEDEGVVRLVVNNTDESDLQVAVVS----LPSF-VSL-D---DRAFRLQAREPRELNLSLAVPRNMPPGMKDEP 81 (220)
T ss_dssp ECCSBCTTCCCEEEEEEEECSSSCEEEEEEE----CCTT-EEC-S---CCEEEECSSSCEEEEEEECCCTTCCSEEEEEE
T ss_pred EcccccCCCcceEEEEEEeCCCCceEEEecc----CCCc-eEe-e---eCcceeCCCCceEEEEEEcchhcccCCceeeE
Confidence 6999999999999999999998877544332 2221 111 1 12347999999999999999886 666555
Q ss_pred EEEEEEeC-CCceeecCeE-EEEEeec-----------CeEEE--EEEEEe-CCeeEEEEEEEecCcccEEEEeEE
Q 013283 170 CTALYSDG-EGERKYLPQF-FKFIVSN-----------PLSVR--TKVRVV-KEITFLEACIENHTKSNLYMDQVE 229 (446)
Q Consensus 170 c~VsY~~~-~ge~~~frK~-ykF~v~~-----------PL~Vr--TK~~~~-~~~~~LEaqIqN~s~~pl~Le~v~ 229 (446)
++|...++ +++...- .+ .+-.+.. -+.+. ..|..+ ++..--+..++|++..||.|.++.
T Consensus 82 i~v~~~~~~~~~~~~~-~i~v~g~v~p~~~~~~~~~~~~i~~~~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~ 156 (220)
T 2qsv_A 82 LVLEVTSPETGKKAVD-SVMVSLPLVDNFPALTAAQTGVMELSTYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVT 156 (220)
T ss_dssp EEEEEECTTTCCEEEE-EEEEEEEECCCGGGCCGGGCCCEECCCEEEEEECTTSCEEEEEEEEECSSSCEEEEEEE
T ss_pred EEEEEEcCCCCccccc-EEEEEEEEcccchhhhhccCCEEEEEeEEeeeccCCCeEEEEEEEEECCCCCEEEEEEE
Confidence 66666542 2221111 22 2222221 13443 122333 455667899999999999999885
No 13
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=89.77 E-value=1.2 Score=50.07 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=65.6
Q ss_pred CCCCCeEEEEEecCceEEeCCcEEEEEEEEeCCC-CccccEEEEEEeCCCCCceeEEEecc----cceeeeeeCCCCeEE
Q 013283 323 ITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTD-KEQGPFEIWLSQNDSDEEKVVMINGL----RIMALAPVEAFGSTD 397 (446)
Q Consensus 323 ~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~-r~~~~l~v~l~~~~~~~~~~~~~~G~----s~~~Lg~L~P~~s~~ 397 (446)
...+++-+. .++|-.+..++-|.+.+.|.|+++ ..+. +.|.|..++ ++...|. ....+ .|.++++..
T Consensus 76 ~v~kp~~v~-~~LP~~v~~GD~~~i~~~v~N~~~~~~~~-v~v~l~~~~-----~~~~~~~~~~~~~~~v-~l~~~~~~~ 147 (915)
T 2hr0_B 76 TVMQDFFID-LRLPYSVVRNEQVEIRAVLYNYRQNQELK-VRVELLHNP-----AFCSLATTKRRHQQTV-TIPPKSSLS 147 (915)
T ss_dssp EECCSSEEE-EECCSEEETTCCEEEEEEEEECCSSCCEE-EEEEECCCT-----TEECSCCSSSCEEEEE-EECTTEEEE
T ss_pred EEeccEEEE-ccCCCEEecCcEEEEEEEEEcCCCCeeEE-EEEEEecCC-----ceEeecCCCCcceeEE-EECCCCeEE
Confidence 445666555 589999999999999999999999 8887 888887654 5655543 12344 789999999
Q ss_pred EEEEEEecccceEEeC
Q 013283 398 FHLNLIATKLGVQRIT 413 (446)
Q Consensus 398 ~~L~l~pl~~Glq~is 413 (446)
+.|.+.|...|.+.|.
T Consensus 148 v~f~i~~~~~G~~~i~ 163 (915)
T 2hr0_B 148 VPYVIVPLKTGLQEVE 163 (915)
T ss_dssp EEEEEEECSCEEEEEE
T ss_pred EEEEEEECccceEEEE
Confidence 9999999999988763
No 14
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.77 E-value=2.5 Score=35.21 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=64.1
Q ss_pred CCccCCCCcccccc--cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEE
Q 013283 79 ADSIGLSGLLVLPQ--AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIV 156 (446)
Q Consensus 79 ~~~~~~~~~L~LP~--sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv 156 (446)
..+.+.-+.|.+|+ .||..-+|++=...|.+.|.+..+++ ++ +..++ ...... ....|.||+..+..|
T Consensus 17 l~a~~~~~~l~~p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~---f~--~~~~~-~F~i~P----~~g~L~pg~~~~i~V 86 (122)
T 2ys4_A 17 IKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAV---FH--IKTCR-PFSIEP----AIGTLNVGESMQLEV 86 (122)
T ss_dssp SCCCSCCCCCCCCSEECCCSEESSSCEEEEEEEECCSSSCEE---EE--EECCT-TEEEES----SEEEECTTCEEEEEE
T ss_pred EEEEcCCcEECCCCeeecCCeecCCeEEEEEEEEECCCCCEE---EE--EecCC-CeEEEC----CcCEECCCCEEEEEE
Confidence 44556667788885 89999999999999999999865442 22 33322 333322 135799999999999
Q ss_pred EEEcccccceEEEEEEEE
Q 013283 157 EHDVKELGAHTLVCTALY 174 (446)
Q Consensus 157 ~~~lke~G~h~L~c~VsY 174 (446)
.|.=++.|.|.-...+.|
T Consensus 87 ~F~P~~~g~~~~~l~v~~ 104 (122)
T 2ys4_A 87 EFEPQSVGDHSGRLIVCY 104 (122)
T ss_dssp EECCSSSBCCCCBCEEEE
T ss_pred EEEcCCCccEEEEEEEEE
Confidence 999999999976666666
No 15
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=88.10 E-value=1.9 Score=51.61 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=64.4
Q ss_pred CCCCeEEEEEecCceEEeCCcEEEEEEEEeCCC-CccccEEEEEEeCCCCCceeEEEecc----cceeeeeeCCCCeEEE
Q 013283 324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTD-KEQGPFEIWLSQNDSDEEKVVMINGL----RIMALAPVEAFGSTDF 398 (446)
Q Consensus 324 ~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~-r~~~~l~v~l~~~~~~~~~~~~~~G~----s~~~Lg~L~P~~s~~~ 398 (446)
..+++-+. .++|-.+..++-|.+.+.|.|+++ ..+. +.|.|..++ ++...+. ....+ .|.++++..+
T Consensus 824 v~kpf~v~-~~LP~sv~~GD~~~i~~~V~N~~~~~~~~-v~v~l~~~~-----~~~~~~~~~~~~~~~v-~v~a~~~~~v 895 (1661)
T 2b39_A 824 VMQDFFID-LRLPYSVVRNEQVEIRAILYNYREAENLK-VRVELLYNP-----AFCSLATAKKRHQQTI-TIPARSSVAV 895 (1661)
T ss_dssp CCCSEEEE-EECCSCEESSCEEEEEEEEEECCTTCCEE-EEEEECCCT-----TEECSSCSSCCCEEEE-EECTTCEEEE
T ss_pred EEeeEEEE-ecCCcEEEeCCEEEEEEEEEcCCCCccEE-EEEEEcCCC-----CeEeecCCCCcceEEE-EECCCCcEEE
Confidence 34555444 489999999999999999999999 8887 888887654 5655543 23444 7899999999
Q ss_pred EEEEEecccceEEeC
Q 013283 399 HLNLIATKLGVQRIT 413 (446)
Q Consensus 399 ~L~l~pl~~Glq~is 413 (446)
.|.+.|...|.+.|.
T Consensus 896 ~f~i~p~~~G~~~i~ 910 (1661)
T 2b39_A 896 PYVIVPLKIGLHEVE 910 (1661)
T ss_dssp EEEEEECSCEEEEEE
T ss_pred EEEEEEcccCeEEEE
Confidence 999999999988763
No 16
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=87.20 E-value=1.5 Score=36.06 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=58.3
Q ss_pred cceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEEE
Q 013283 95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTAL 173 (446)
Q Consensus 95 G~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~Vs 173 (446)
|.+-+|+.+.+.+++.|--+.+++++.+.+|=--=.+.... ...++.||++....+.+-=+..|.+.|.+..+
T Consensus 14 g~~~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~------~~~~v~pg~~~~~~~~~~P~~~G~~~L~a~f~ 86 (102)
T 2xzz_A 14 GAAVVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL------NVGDIGGNETVTLRQSFVPVRPGPRQLIASLD 86 (102)
T ss_dssp SCCCSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE------EECCBCTTCEEEEEEEECCCSCSSCCCEEEEE
T ss_pred CCcccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE------EcCcCCCCCEEEEEEEEecCcccceEEEEEEE
Confidence 66788999999999999999999999999874322222111 13468999999999999999999999987754
No 17
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=86.66 E-value=2.7 Score=48.94 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc------ceeeeeeCCCCeEE
Q 013283 324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR------IMALAPVEAFGSTD 397 (446)
Q Consensus 324 ~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s------~~~Lg~L~P~~s~~ 397 (446)
..+++-+. .++|-.+..++-|.+.+.|.|+++..+. +.|.|..++ +.+-++|.. ...+ .|.++++..
T Consensus 662 v~kp~~v~-~~lP~~v~~Gd~~~l~~~v~N~~~~~~~-v~v~l~~~~----~~~~~~~~~~~~~~~~~~v-~v~~~~~~~ 734 (1325)
T 2pn5_A 662 TVQPFYIV-ENLPYSIKRGEAVVLQFTLFNNLGAEYI-ADVTLYNVA----NQTEFVGRPNTDLSYTKSV-SVPPKVGVP 734 (1325)
T ss_dssp ECCSEEEE-EECCSEEETTCEEEEEEEEEECSSSCEE-EEEEEECGG----GCEEETTSCTTCCEEEEEE-EECTTCCEE
T ss_pred EeeeEEEE-cCCCcEEEcCCEEEEEEEEEeCCCCcEE-EEEEEeecC----CceEEeccCCCCCcceEEE-EECCCCeEE
Confidence 34455444 4789999999999999999999999887 888886543 245565542 2334 689999999
Q ss_pred EEEEEEecccceEEe
Q 013283 398 FHLNLIATKLGVQRI 412 (446)
Q Consensus 398 ~~L~l~pl~~Glq~i 412 (446)
+.|.+.|...|...|
T Consensus 735 v~f~i~~~~~G~~~i 749 (1325)
T 2pn5_A 735 ISFLIKARKLGEMAV 749 (1325)
T ss_dssp EEEEEEECSSEEEEE
T ss_pred EEEEEEEcccceEEE
Confidence 999999999997766
No 18
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=82.22 E-value=2.8 Score=45.49 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=53.7
Q ss_pred CCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee------eeCCCCeEEE
Q 013283 325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDF 398 (446)
Q Consensus 325 ~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg------~L~P~~s~~~ 398 (446)
..++.+.+ ++++.+.++++|.+.+.++|.|++... +.+.+.. ..+.|+|.....+. .|.|+++.++
T Consensus 479 ~~~v~~~~-~~~~~~~~G~df~v~l~~~N~s~~~~~-v~~~l~a------~~v~YtG~~~~~~~~~~~~v~L~p~~~~~i 550 (692)
T 1vjj_A 479 EPSIIGKL-KVAGMLAVGKEVNLVLLLKNLSRDTKT-VTVNMTA------WTIIYNGTLVHEVWKDSATMSLDPEEEAEH 550 (692)
T ss_dssp CCSEEEEE-EECSCCBTTSCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTCCEEEEEEEEEEEEEECTTCEEEE
T ss_pred CCCeEEEE-EcCCCCCCCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEeeCCccccceEEeeEEEEECCCceEEE
Confidence 45566665 567778899999999999999887765 6666654 35777776554433 5899999999
Q ss_pred EEEEEe
Q 013283 399 HLNLIA 404 (446)
Q Consensus 399 ~L~l~p 404 (446)
.+.+-+
T Consensus 551 ~~~i~y 556 (692)
T 1vjj_A 551 PIKISY 556 (692)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 987654
No 19
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=82.10 E-value=14 Score=30.86 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=56.9
Q ss_pred CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEec
Q 013283 326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 405 (446)
Q Consensus 326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl 405 (446)
.||.+.-. .|+.+..+++.+|...|+|.-+.....+.|.+..+. -.+.+ ..++.|.+|.+.++.++.-|.
T Consensus 3 PDL~vt~i-tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~ly~~g------~~v~t---~~v~~LaaG~s~tv~~~w~~~ 72 (114)
T 2l0d_A 3 PDLVPVSL-TPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDG------IVVDT---QTVTSLESENSTNVDFHWTLD 72 (114)
T ss_dssp CCEEEEEE-ECSEECTTSEEEEEEEEEECSSSCBCCEEEEEEETT------EEEEE---EEESCBCBTCEEEEEEEEECC
T ss_pred CCcEEEec-cCCCcCCCCeEEEEEEEEECCCCCCCCEEEEEEECC------EEEcc---eecccccCCCEEEEEEEEeec
Confidence 45554444 488899999999999999996655555667665442 22222 246679999999999988887
Q ss_pred -ccceEEeCc
Q 013283 406 -KLGVQRITG 414 (446)
Q Consensus 406 -~~Glq~isg 414 (446)
..|-+.|.-
T Consensus 73 ~~~G~ytl~a 82 (114)
T 2l0d_A 73 GTANSYTLTV 82 (114)
T ss_dssp CSCSEEEEEE
T ss_pred CcCceEEEEE
Confidence 488888753
No 20
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=80.10 E-value=3.1 Score=45.40 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=52.3
Q ss_pred CCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee------eeCCCCeEEEE
Q 013283 326 KEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDFH 399 (446)
Q Consensus 326 ~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg------~L~P~~s~~~~ 399 (446)
.++.+.+. . +.+.++++|.+.+.++|.|++... +.+.+.. ..+.|+|.....+. .|.|+++.++.
T Consensus 516 ~~v~~~i~-~-~~~~iG~df~v~l~~~N~s~~~~~-v~~~l~a------~~v~YtG~~~~~~~~~~~~~~L~p~~~~~i~ 586 (731)
T 1ex0_A 516 SNVDMDFE-V-ENAVLGKDFKLSITFRNNSHNRYT-ITAYLSA------NITFYTGVPKAEFKKETFDVTLEPLSFKKEA 586 (731)
T ss_dssp -CEEEEEE-E-CCCBTTCCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTSCEEEEEEEEEEEEEECTTEEEEEE
T ss_pred CCeEEEEe-c-CCCCCCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEeeCCccccceeEeeEEEEECCCceEEEE
Confidence 45777765 4 778899999999999999888765 6666654 35677776444332 58999999999
Q ss_pred EEEEec
Q 013283 400 LNLIAT 405 (446)
Q Consensus 400 L~l~pl 405 (446)
+.+-+-
T Consensus 587 ~~i~y~ 592 (731)
T 1ex0_A 587 VLIQAG 592 (731)
T ss_dssp EEECHH
T ss_pred EEECHH
Confidence 877553
No 21
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=79.83 E-value=2 Score=51.42 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=62.7
Q ss_pred CCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEeccc-----------ceeeeeeCC
Q 013283 324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLR-----------IMALAPVEA 392 (446)
Q Consensus 324 ~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s-----------~~~Lg~L~P 392 (446)
..+++-+. .++|-.+..++-|.+.+.|.|+++..+. +.|.|..++ ++...|.. ...+ .|.+
T Consensus 819 v~kpf~v~-~~LP~~v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~v-~v~a 890 (1676)
T 3cu7_A 819 VFKDVFLE-MNIPYSVVRGEQIQLKGTVYNYRTSGMQ-FCVKMSAVE-----GICTSESPVIDHQGTKSSKCVRQ-KVEG 890 (1676)
T ss_dssp ECCSEEEE-EECCSCEETTCCEEEEEEEEECSSSCBC-CCCEECCCT-----TEECSSCC----------CCCCC-CBCT
T ss_pred EEeeEEEE-ccCCcEEEECcEEEEEEEEEcCCCCcEE-EEEEEecCC-----CeEEeccccccccccccceeEEE-EECC
Confidence 34555443 4889999999999999999999999888 888887653 56555432 2334 6799
Q ss_pred CCeEEEEEEEEecccceEEe
Q 013283 393 FGSTDFHLNLIATKLGVQRI 412 (446)
Q Consensus 393 ~~s~~~~L~l~pl~~Glq~i 412 (446)
+++..+.|.+.|...|.+.|
T Consensus 891 ~~~~~v~f~i~p~~~G~~~i 910 (1676)
T 3cu7_A 891 SSSHLVTFTVLPLEIGLHNI 910 (1676)
T ss_dssp TEEEECCEEEEECSSSCCCE
T ss_pred CCeEEEEEEEEEcccCcEEE
Confidence 99999999999999987755
No 22
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.73 E-value=2.6 Score=34.14 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=50.2
Q ss_pred cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCc----eeeccCCCCCCccccCCCCeeeEEEEEEcccccceEE
Q 013283 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ----RILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTL 168 (446)
Q Consensus 93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~----r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L 168 (446)
.||.+++|+.-...+.+.|.+..++ .++. ..+.. ..... .+-..|.||++.+..|.|.-+..|.+.-
T Consensus 18 dFG~v~~g~~~~~~~~l~N~g~~p~---~~~~--~~~~~~~~~~f~v~----p~~g~i~pg~~~~i~V~f~~~~~g~f~~ 88 (112)
T 2e6j_A 18 DIGKVFTGSAHCYEAILYNKGSIDA---LFNM--TPPTSALGACFVFS----PKEGIIEPSGVQAIQISFSSIILGNFEE 88 (112)
T ss_dssp EEEEEESSCCEEEEEEEEECCSSCE---EEEE--CCCSSHHHHHCEEE----SSEEEECTTBCCEEEEEECCCCCEEEEE
T ss_pred ecEeEEECCEEEEEEEEEECCcceE---EEEE--ecCCccccCcEEEE----CCcCEECCCCEEEEEEEEECCCcceEEE
Confidence 7999999999999999999986422 2222 22211 12221 1134699999999999999999998876
Q ss_pred EEEE
Q 013283 169 VCTA 172 (446)
Q Consensus 169 ~c~V 172 (446)
..+|
T Consensus 89 ~i~v 92 (112)
T 2e6j_A 89 EFLV 92 (112)
T ss_dssp EECE
T ss_pred EEEE
Confidence 6555
No 23
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=77.10 E-value=4.6 Score=43.79 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=51.3
Q ss_pred CCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeee------eeCCCCeEEE
Q 013283 325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALA------PVEAFGSTDF 398 (446)
Q Consensus 325 ~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg------~L~P~~s~~~ 398 (446)
..++.+.+ ++.+.+ ++++|.+.+.++|.|++... +.+.+.. ..+.|+|.....+. .|.|+++.++
T Consensus 470 ~~~v~~~i-~~~~~~-~G~df~v~v~~~N~s~~~~~-v~~~l~a------~~v~YtG~~~~~~~~~~~~~~L~p~~~~~v 540 (695)
T 1g0d_A 470 QGRLQLSI-KHAQPV-FGTDFDVIVEVKNEGGRDAH-AQLTMLA------MAVTYNSLRRGECQRKTISVTVPAHKAHKE 540 (695)
T ss_dssp --CEEEEE-EECCCB-TTCCEEEEEEEEECSSSCEE-EEEEEEE------EEECTTCBCCCCCCEEEEEEEECTTEEEEE
T ss_pred CCCeEEEE-EeCCCC-CCCCEEEEEEEEECCCCCEE-EEEEEEE------EEEeeCCcccCceeEeeEEEEECCCceEEE
Confidence 45566666 445556 99999999999999888765 6676654 36788887554332 5789999999
Q ss_pred EEEEEe
Q 013283 399 HLNLIA 404 (446)
Q Consensus 399 ~L~l~p 404 (446)
.+.+-+
T Consensus 541 ~~~i~y 546 (695)
T 1g0d_A 541 VMRLHY 546 (695)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 887755
No 24
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.96 E-value=7.8 Score=32.07 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=49.4
Q ss_pred EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccceEEeCc
Q 013283 339 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRITG 414 (446)
Q Consensus 339 v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~isg 414 (446)
+.++.--+.++.|+|.++.... + .+... ..|-+.=. -|.|.|+++..+.++..|..+|...-.=
T Consensus 37 ~~v~~~~~~~~~l~N~g~~~~~-f--~~~~~-----~~F~i~P~----~g~L~pg~~~~i~V~F~P~~~g~~~~~l 100 (122)
T 2ys4_A 37 CPVKYSTQKILLVRNIGNKNAV-F--HIKTC-----RPFSIEPA----IGTLNVGESMQLEVEFEPQSVGDHSGRL 100 (122)
T ss_dssp EESSSCEEEEEEEECCSSSCEE-E--EEECC-----TTEEEESS----EEEECTTCEEEEEEEECCSSSBCCCCBC
T ss_pred eecCCeEEEEEEEEECCCCCEE-E--EEecC-----CCeEEECC----cCEECCCCEEEEEEEEEcCCCccEEEEE
Confidence 4688889999999999887655 4 44433 26877643 3789999999999999999999855443
No 25
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=72.81 E-value=9.8 Score=32.64 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=61.5
Q ss_pred EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCC-CceeEEEecccceeeeeeCCCCeEEEEEEEEe-------cccceE
Q 013283 339 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSD-EEKVVMINGLRIMALAPVEAFGSTDFHLNLIA-------TKLGVQ 410 (446)
Q Consensus 339 v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~-~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~p-------l~~Glq 410 (446)
+...++-+-++.|+|.+.-.+. +.+....++.. ..+.+-+. + .=|.|+|+++..+.+++.- +..|-+
T Consensus 39 v~~~~~~~~~l~I~Ntg~vpa~-F~f~~~~~~~~~~~~wl~v~-P---~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~~ 113 (140)
T 3qbt_B 39 VKFRQLQKEKFQISNNGQVPCH-FSFIPKLNDSQYCKPWLRAE-P---FEGYLEPNETVDISLDVYVSKDSVTILNSGED 113 (140)
T ss_dssp ECBTCCEEEEEEEEECSSSCEE-EEEECCTTCSSSSCTTEEEE-S---CEEEECTTCEEEEEEEECBCHHHHHHHHHSSS
T ss_pred ceeeeeeeeEEEEEcCCccceE-EEEecCCCchhhhhHhhhcC-C---cccccCCCCeeEEEEEEEEccCcccccccchh
Confidence 5688888999999999888877 66654332211 11345554 3 2568999999999999983 566778
Q ss_pred EeCceEEEeCCCCeEe
Q 013283 411 RITGITVFDKLEKITY 426 (446)
Q Consensus 411 ~isgI~l~D~~~~~~y 426 (446)
++..+-+.-...+|.|
T Consensus 114 ~l~diLvL~Ve~G~d~ 129 (140)
T 3qbt_B 114 KIEDILVLHLDRGKDY 129 (140)
T ss_dssp CSCEEEEEEETTSCEE
T ss_pred hhheeEEEEeecCCcE
Confidence 8898888888888887
No 26
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=71.10 E-value=24 Score=29.65 Aligned_cols=92 Identities=16% Similarity=0.108 Sum_probs=51.5
Q ss_pred ecceeeEEEEEEcCCCCcee-----eEEEEEEEeCC-Cceeec-cCCC----CCCccccCCCCeeeEEEEEE-cccccce
Q 013283 99 LGETFCSYISINNSSTLEVR-----DVVIKAEIQTD-KQRILL-LDTS----KSPVESIRAGGRYDFIVEHD-VKELGAH 166 (446)
Q Consensus 99 lGEtF~~~i~v~N~s~~~v~-----~V~ikvelqT~-s~r~~L-~~~~----~~~~~~L~pg~~ld~iv~~~-lke~G~h 166 (446)
.|+.....|.+.|.++.+++ +-+....+... ..++-- ++.. ......|+||++..+-+..+ .-++|.|
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~Y 95 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGTY 95 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEEE
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCccE
Confidence 68899999999999876441 11112222221 122211 1100 01234799999998888887 4468999
Q ss_pred EEEEEEEEEeCCCceeecCeEEEEEe
Q 013283 167 TLVCTALYSDGEGERKYLPQFFKFIV 192 (446)
Q Consensus 167 ~L~c~VsY~~~~ge~~~frK~ykF~v 192 (446)
+|.+...=. .-+.+.++--=+|+|
T Consensus 96 tl~a~l~~~--~~~~~~~~~~~~~~~ 119 (120)
T 3isy_A 96 EVKVTFKGR--AENLKQVQAVQQFEV 119 (120)
T ss_dssp EEEEEECCE--ETTCCCCEEEEEEEE
T ss_pred EEEEEEEee--eccceeeeeeeEEEe
Confidence 998764211 122344454455655
No 27
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=69.96 E-value=12 Score=40.66 Aligned_cols=74 Identities=14% Similarity=0.252 Sum_probs=60.1
Q ss_pred cccceeecceeeEEEEEEcCCCCceeeEEEEEE---EeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEE
Q 013283 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAE---IQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLV 169 (446)
Q Consensus 93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikve---lqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~ 169 (446)
--|.+-+|+.+.+.|++.|--+.+++++.+.+| |.-+..++.+. ..+.||+++...+.+-=+..|.|.|.
T Consensus 593 v~g~~~v~~~~~v~v~f~NPL~~~L~~c~~~vEG~GL~~~~~~~~~~-------~~v~pg~~~~~~~~~~P~~~G~~~L~ 665 (687)
T 2q3z_A 593 ILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIP-------DPVEAGEEVKVRMDLVPLHMGLHKLV 665 (687)
T ss_dssp EESCCSSSSCEEEEEEEECCSSSCBCSEEEEEECTTTCSSCEEEEEC-------SCBCTTCEEEEEEEECCCSSSCEEEE
T ss_pred eCCCcccCCeEEEEEEEECCCCCcccceEEEEECCCCCCCceEEecC-------CCcCCCCEEEEEEEEEeccccceEEE
Confidence 458889999999999999999999999999887 22222233321 36899999999999999999999998
Q ss_pred EEEE
Q 013283 170 CTAL 173 (446)
Q Consensus 170 c~Vs 173 (446)
+..+
T Consensus 666 a~f~ 669 (687)
T 2q3z_A 666 VNFE 669 (687)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 28
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=66.05 E-value=17 Score=30.45 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=37.0
Q ss_pred CcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEec
Q 013283 343 KPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 405 (446)
Q Consensus 343 ~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl 405 (446)
+...-.++|+|.+++.+. ..+..+. ..-+.+.=. .|.|+|+++..+.+.+.|.
T Consensus 27 ~~~~~~l~L~N~s~~~va---FKVKTT~---p~~y~VrP~----~G~i~P~~s~~v~V~~~~~ 79 (128)
T 1z9l_A 27 DVVTTNLKLQNPSDRKVC---FKVKTTA---PRRYCVRPN----SGVIDPGSIVTVSVMLQPF 79 (128)
T ss_dssp SCEEEEEEEECCSSSCEE---EEEEESC---GGGEEEESC----EEEECTTCEEEEEEEECCC
T ss_pred ceEEEEEEEECCCCCeEE---EEEECCC---CCceEEeCC----CcEECCCCeEEEEEEECcC
Confidence 344688999999987654 4454432 123444433 6889999999999998775
No 29
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=64.84 E-value=52 Score=27.56 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=50.3
Q ss_pred CCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccc-------cEEEEEEeCCCCCceeEEE--ec----ccceeeeeeC
Q 013283 325 SKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQG-------PFEIWLSQNDSDEEKVVMI--NG----LRIMALAPVE 391 (446)
Q Consensus 325 ~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~-------~l~v~l~~~~~~~~~~~~~--~G----~s~~~Lg~L~ 391 (446)
-++|.+.|. .-..+....+++.|+|.+++... -.++.|... ....+| +- .....--.|.
T Consensus 4 ~~~l~~~v~----~~~~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~----~G~~VwrwS~~~~FtQa~~~~tl~ 75 (120)
T 3isy_A 4 NQEVVLSID----AIQEPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDS----EHKERYRYSKEKMFTQAFQNLTLE 75 (120)
T ss_dssp CCSEEEEEE----EEECSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECT----TCCEEEETTTTCCCCCCCEEEEEC
T ss_pred ccEEEEEEe----eccCCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECC----CCCEEEEccccchhhhhhceEEEC
Confidence 356666662 12367799999999999887654 023333321 124555 21 1122233689
Q ss_pred CCCeEEEEEEEE-ecccceEEeCc
Q 013283 392 AFGSTDFHLNLI-ATKLGVQRITG 414 (446)
Q Consensus 392 P~~s~~~~L~l~-pl~~Glq~isg 414 (446)
||.+..+..+.= ++.+|--.+.+
T Consensus 76 pGE~~~f~~~w~~~~~pG~Ytl~a 99 (120)
T 3isy_A 76 SGETYDFSDVWKEVPEPGTYEVKV 99 (120)
T ss_dssp TTCEEEEEEEESSCCCSEEEEEEE
T ss_pred CCCEEEEEEEeCCCCCCccEEEEE
Confidence 999999988877 46677666655
No 30
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=64.82 E-value=19 Score=30.30 Aligned_cols=54 Identities=9% Similarity=0.088 Sum_probs=38.7
Q ss_pred EEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecccc
Q 013283 345 FLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATKLG 408 (446)
Q Consensus 345 F~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~G 408 (446)
.+-.++|+|.|++.+. +.|.-.... -+.+.=. .|.|+|++++.+.+.+-|...+
T Consensus 27 ~~~~l~l~N~s~~~va-FKVKTT~p~-----~y~VrP~----~Gii~P~~s~~v~V~~q~~~~~ 80 (126)
T 1msp_A 27 HTYHIKITNAGGRRIG-WAIKTTNMR-----RLSVDPP----CGVLDPKEKVLMAVSCDTFNAA 80 (126)
T ss_dssp CCEEEEEEECSSSCEE-EEEEESCTT-----TEEEESC----EEEECTTCEEEEEEEECCCCGG
T ss_pred eEEEEEEECCCCCeEE-EEEEcCCCC-----cEEEECC----CeEECCCCEEEEEEEecCCCCC
Confidence 3568899999998766 555443322 3444433 7889999999999999887654
No 31
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=64.00 E-value=17 Score=30.36 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=37.2
Q ss_pred EEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEec
Q 013283 346 LLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 405 (446)
Q Consensus 346 ~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl 405 (446)
...++|+|.++..+. +.|.-.++. -+.+.-. .|.|+|+++.++.+.+.|-
T Consensus 26 ~~~l~L~N~t~~~vA-FKVKtT~p~-----~YrVrP~----~G~I~Pg~~~~I~I~~q~~ 75 (116)
T 1m1s_A 26 NSTHNITSESDSRLA-FKVKSSNNE-----HYRVRPV----YGFVDAKGKSKLDINRLPG 75 (116)
T ss_dssp EEEEEEEECSSSEEE-EEEEESCTT-----TEEEECS----EEEECTTCEEEEEEEECSC
T ss_pred EEEEEEECCCCCeEE-EEEEecCCC-----ceEEcCC----ceEECCCCeEEEEEEeCCC
Confidence 678899999887655 555544332 4555554 7899999999999998873
No 32
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=63.03 E-value=13 Score=30.64 Aligned_cols=49 Identities=27% Similarity=0.215 Sum_probs=36.5
Q ss_pred EEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEe
Q 013283 346 LLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIA 404 (446)
Q Consensus 346 ~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~p 404 (446)
...++|+|.++..+. +.|.-.++. -+.+.-. .|.|+|+++.++.+.+.|
T Consensus 18 ~~~l~L~N~t~~~va-FKVKtT~p~-----~y~VrP~----~G~I~P~~~~~i~I~~q~ 66 (109)
T 1row_A 18 SSTHKLVNGGAEKIV-FKIKSSNNN-----EYRIAPV----FGFVDPSGSKDVVITRTA 66 (109)
T ss_dssp EEEEEEEECSSSCEE-EEEEESCSS-----SEEEECS----EEEECTTEEEEEEEEECS
T ss_pred eEEEEEEcCCCCeEE-EEEEeCCCC-----ceEEcCC----ceEECCCCeEEEEEEeCC
Confidence 478899999888765 555544332 4555544 788999999999999887
No 33
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=62.22 E-value=17 Score=36.62 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=60.7
Q ss_pred CCCCeEEEEEecCce-EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEE-Ee-ccccee---e---eeeCCCC
Q 013283 324 TSKEIELNVVEVPSV-VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVM-IN-GLRIMA---L---APVEAFG 394 (446)
Q Consensus 324 ~~~dl~l~v~~~P~~-v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~-~~-G~s~~~---L---g~L~P~~ 394 (446)
..+.|.+. +.+|.. ..-+++..+++.|.|+|.+.+..+.+.|.+.- .|+ ++ |...-. + ..|.|++
T Consensus 209 ssGpl~L~-vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~-----~v~l~s~~~y~~~Va~~E~~epV~pgs 282 (380)
T 3ugu_A 209 SDKPLRLA-VSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVT-----NVVLYSSDYYIKTVAAEEAQEKVPPNS 282 (380)
T ss_dssp CCCEEEEE-EEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEE-----EECSSSCCEEEEEEEEEECSCCBCTTE
T ss_pred cCCCEEEE-EEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEE-----EEEEecCCeEEEEEEEeccCCcCCCCC
Confidence 45666655 477755 67899999999999999999876777777642 121 11 100000 1 1679999
Q ss_pred eEEEEEEEEecccceEEeCceEE
Q 013283 395 STDFHLNLIATKLGVQRITGITV 417 (446)
Q Consensus 395 s~~~~L~l~pl~~Glq~isgI~l 417 (446)
+.+=.++|.|+...-..=.||.|
T Consensus 283 t~~k~~~l~P~l~~n~~krglAL 305 (380)
T 3ugu_A 283 SLTKTLTLVPLLANNRERRGIAL 305 (380)
T ss_dssp EEEEEEEECCCGGGCSCCTTSCB
T ss_pred eEEeeEEEEEecccCCceeeEEe
Confidence 99999999999887666666654
No 34
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=60.29 E-value=20 Score=30.08 Aligned_cols=67 Identities=9% Similarity=0.028 Sum_probs=49.3
Q ss_pred EecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecc
Q 013283 333 VEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATK 406 (446)
Q Consensus 333 ~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~ 406 (446)
..+|.++.-++-|++++.|.|+-+.-|. +.+.|..+..-. + .- ....-.=|-++...+|.|++.|..
T Consensus 12 ltlPySv~rgE~f~lkatVfNyL~~Ci~-V~v~L~~S~~~~--~---~~-~~~~s~ClC~~~~ktf~W~v~~~~ 78 (118)
T 2icn_B 12 FDIPKSVRPNDEVTAVLAVQTELKECMV-VKTYLISSIPLQ--G---AF-NYKYTACLCDDNPKTFYWDFYTNR 78 (118)
T ss_dssp CCCCSEECSSCCEEEEEEEEECCSSCEE-EEEEEEESSCCC--G---GG-GCEEEEEECSSSCEEEEEEECCSS
T ss_pred EeCCCcccCCCEEEEEEEEEeccCcCEE-EEEEEcCCCCeE--e---ec-CCcCCEEECCCCCEEEEEEEEECc
Confidence 3689999999999999999999888887 889998875211 1 10 111122367778888888888884
No 35
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=59.56 E-value=34 Score=34.56 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=54.9
Q ss_pred CCCCeEEEEEecCce-EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCC-----CCceeEEEecccceeeeeeCCCCeEE
Q 013283 324 TSKEIELNVVEVPSV-VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDS-----DEEKVVMINGLRIMALAPVEAFGSTD 397 (446)
Q Consensus 324 ~~~dl~l~v~~~P~~-v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~-----~~~~~~~~~G~s~~~Lg~L~P~~s~~ 397 (446)
..+.|.|. +.+|.. ..-+++..+++.|.|+|.+.+..+.+.|.+--+ ....-..++-.. .-+.+.|+++..
T Consensus 190 ssGpl~l~-vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~~k~~Va~~e--~~e~V~pgst~~ 266 (392)
T 1suj_A 190 SDRPLHLE-ASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKYVKTVCAEE--TNDTVAANSTLS 266 (392)
T ss_dssp TTEEEEEE-EEESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECSSSCCEEEEEEEEEE--CCCCBCTTEEEE
T ss_pred cCCCEEEE-EEeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEEecCCcEEEEEEEEe--cCCCcCCCCEEE
Confidence 45555555 477766 678999999999999999998877777776310 011111222110 122579999999
Q ss_pred EEEEEEeccc
Q 013283 398 FHLNLIATKL 407 (446)
Q Consensus 398 ~~L~l~pl~~ 407 (446)
..+.|+|+.+
T Consensus 267 k~~~L~P~l~ 276 (392)
T 1suj_A 267 KTFSVTPMLA 276 (392)
T ss_dssp EEEEECCCGG
T ss_pred EEEEEecccc
Confidence 9999998887
No 36
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=59.52 E-value=53 Score=27.65 Aligned_cols=73 Identities=10% Similarity=0.042 Sum_probs=56.9
Q ss_pred ceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEEEEE
Q 013283 96 AIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 175 (446)
Q Consensus 96 ~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~VsY~ 175 (446)
.+..|++-...+.|.|....++.+..++.-+ ....+ .. ..+ .|++|++-...+.+.-+..|.|.|...|.+.
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyv--ng~~v---~t--~~v-~La~G~s~tv~f~~~~~~~G~~~v~AvVD~~ 99 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI--NGTLY---KN--WTV-SLGPKEEKVLTFNWTPTQEGMYRINATVDEE 99 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEEEEEE--TTEEE---EE--EEE-EECTTCEEEEEEEECCSSCEEEEEEEEESTT
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEEEEEE--CCEEE---ee--EEe-ccCCCCeEEEEEEEEcCCCcEEEEEEEEcCC
Confidence 6788999999999999998888887666654 33222 11 123 5999999998999888899999999998665
Q ss_pred e
Q 013283 176 D 176 (446)
Q Consensus 176 ~ 176 (446)
.
T Consensus 100 n 100 (127)
T 3idu_A 100 N 100 (127)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=59.00 E-value=24 Score=33.50 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=55.2
Q ss_pred EEEEcCCCCCeeeeEEeeeeccCCCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEe
Q 013283 301 ITWRTNLGEPGRLQTQQILGTTITSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMIN 380 (446)
Q Consensus 301 I~WRs~~Ge~G~L~Ts~l~~~~~~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~ 380 (446)
-.|..+....|.--.+.+.|. +--..+.++++|.+...|..+.|++..+. =|+...
T Consensus 33 ~~~l~~~~g~GLeI~g~f~r~--------------------~g~i~l~l~~~N~s~~~is~faIQfNkNs----FGL~p~ 88 (258)
T 2g30_A 33 AVWLPAVKAKGLEISGTFTHR--------------------QGHIYMEMNFTNKALQHMTDFAIQFNKNS----FGVIPS 88 (258)
T ss_dssp EEEECGGGTTTEEEEEEEEEE--------------------TTEEEEEEEEEECSSSCBCCCEEEECCBT----TCCEES
T ss_pred hhcccccCCCcEEEEEEEEEe--------------------CCEEEEEEEEecCCccceeeeEEEEcccc----cCcccC
Confidence 467777666666666665553 33455778999999999998899887763 356555
Q ss_pred cccceeeeeeCCCCeEEEEEEEEe
Q 013283 381 GLRIMALAPVEAFGSTDFHLNLIA 404 (446)
Q Consensus 381 G~s~~~Lg~L~P~~s~~~~L~l~p 404 (446)
+..... ..|+|+++.++.+.+-.
T Consensus 89 ~~~~~~-~~L~pgqs~~v~lpl~~ 111 (258)
T 2g30_A 89 TPLAIH-TPLMPNQSIDVSLPLNT 111 (258)
T ss_dssp SCCCCC-SCBCTTCEEEEEEEEES
T ss_pred ccccCC-CccCCCCcEEEEEeeec
Confidence 543222 46999999998887665
No 38
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.32 E-value=22 Score=30.63 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=36.1
Q ss_pred cEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEec
Q 013283 344 PFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIAT 405 (446)
Q Consensus 344 PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl 405 (446)
...-.++|+|.+++.+. +. +.... ..-+.+.=. .|.|+|++++.+.+.+.|.
T Consensus 32 ~~~~~l~L~N~s~~~Va-FK--VKTT~---p~~y~VrP~----~GiI~P~~s~~v~V~l~~~ 83 (147)
T 2cri_A 32 VVTTNLKLQNPSDRKVC-FK--VKTTA---PRRYCVRPN----SGIIDPGSIVTVSVMLQPF 83 (147)
T ss_dssp CCCEEEEEECCSSSCEE-EE--EEESC---TTSEEEESS----EEECCTTCEEEEEEEECCC
T ss_pred eEEEEEEEECCCCCcEE-EE--EECCC---CccEEEcCC----CcEECCCCeEEEEEEECCC
Confidence 33578999999987655 44 44432 123444433 6889999999999998775
No 39
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=57.09 E-value=61 Score=26.79 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=50.5
Q ss_pred eeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcc-cccceEEEEEEEEE
Q 013283 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVK-ELGAHTLVCTALYS 175 (446)
Q Consensus 97 iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lk-e~G~h~L~c~VsY~ 175 (446)
.+.|+.-.....|.|.......+..++.-+ ....+. ..++..|++|.+....+.+.-. +.|.|.|...|...
T Consensus 15 ~~~~~~~ti~atVkN~G~~~a~~~~V~ly~--~g~~v~-----t~~v~~LaaG~s~tv~~~w~~~~~~G~ytl~a~VD~~ 87 (114)
T 2l0d_A 15 VVPNTVNTMTATIENQGNKDSTSFNVSLLV--DGIVVD-----TQTVTSLESENSTNVDFHWTLDGTANSYTLTVNVDPE 87 (114)
T ss_dssp ECTTSEEEEEEEEEECSSSCBCCEEEEEEE--TTEEEE-----EEEESCBCBTCEEEEEEEEECCCSCSEEEEEEEECTT
T ss_pred cCCCCeEEEEEEEEECCCCCCCCEEEEEEE--CCEEEc-----ceecccccCCCEEEEEEEEeecCcCceEEEEEEECCC
Confidence 788999999999999976655444433322 222111 1235579999988777777777 68999999988654
No 40
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=55.02 E-value=20 Score=36.03 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=26.4
Q ss_pred eeecceeeEEEEEEcCCCCceeeEEEEEEE
Q 013283 97 IYLGETFCSYISINNSSTLEVRDVVIKAEI 126 (446)
Q Consensus 97 iylGEtF~~~i~v~N~s~~~v~~V~ikvel 126 (446)
-|=||+....++|+|+|+..|+.|.+++.-
T Consensus 224 Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q 253 (380)
T 3ugu_A 224 YYHGEPIPVTVAVTNSTEKTVKKIKVLVEQ 253 (380)
T ss_dssp EETTCCEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred CcCCCEEEEEEEEEcCCCCeEeEEEEEEEE
Confidence 477999999999999999999998887643
No 41
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=53.68 E-value=33 Score=29.25 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=49.4
Q ss_pred cccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCcee---eccCCCCCCccccCCCCeeeEEEEEEcccc------
Q 013283 93 AFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRI---LLLDTSKSPVESIRAGGRYDFIVEHDVKEL------ 163 (446)
Q Consensus 93 sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~---~L~~~~~~~~~~L~pg~~ld~iv~~~lke~------ 163 (446)
.||.+..|+.=+..|.+.|.+.-+++ ++.......... -| ... ..-..|.||++++..|...+...
T Consensus 35 dFG~v~~~~~~~~~l~I~Ntg~vpa~---F~f~~~~~~~~~~~~wl-~v~-P~~G~L~Pge~~~I~v~~~v~~~~~~~ln 109 (140)
T 3qbt_B 35 VFENVKFRQLQKEKFQISNNGQVPCH---FSFIPKLNDSQYCKPWL-RAE-PFEGYLEPNETVDISLDVYVSKDSVTILN 109 (140)
T ss_dssp EEEEECBTCCEEEEEEEEECSSSCEE---EEEECCTTCSSSSCTTE-EEE-SCEEEECTTCEEEEEEEECBCHHHHHHHH
T ss_pred EeeeceeeeeeeeEEEEEcCCccceE---EEEecCCCchhhhhHhh-hcC-CcccccCCCCeeEEEEEEEEccCcccccc
Confidence 79999999999999999999865443 333322211111 01 000 12347999999999999987442
Q ss_pred -----cceEEEEEE
Q 013283 164 -----GAHTLVCTA 172 (446)
Q Consensus 164 -----G~h~L~c~V 172 (446)
=..+|+|.|
T Consensus 110 ~g~~~l~diLvL~V 123 (140)
T 3qbt_B 110 SGEDKIEDILVLHL 123 (140)
T ss_dssp HSSSCSCEEEEEEE
T ss_pred cchhhhheeEEEEe
Confidence 245888887
No 42
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.55 E-value=36 Score=27.03 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=46.7
Q ss_pred EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCce--eEEEecccceeeeeeCCCCeEEEEEEEEecccceEEe
Q 013283 339 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEK--VVMINGLRIMALAPVEAFGSTDFHLNLIATKLGVQRI 412 (446)
Q Consensus 339 v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~--~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~~Glq~i 412 (446)
+.++++-+.++.|+|.++..+ .+.+..+. ... .|-+. . .=|.|.|+++..+.+++-|-.+|...-
T Consensus 22 v~~g~~~~~~~~l~N~g~~p~---~~~~~~~~--~~~~~~f~v~-p---~~g~i~pg~~~~i~V~f~~~~~g~f~~ 88 (112)
T 2e6j_A 22 VFTGSAHCYEAILYNKGSIDA---LFNMTPPT--SALGACFVFS-P---KEGIIEPSGVQAIQISFSSIILGNFEE 88 (112)
T ss_dssp EESSCCEEEEEEEEECCSSCE---EEEECCCS--SHHHHHCEEE-S---SEEEECTTBCCEEEEEECCCCCEEEEE
T ss_pred EEECCEEEEEEEEEECCcceE---EEEEecCC--ccccCcEEEE-C---CcCEECCCCEEEEEEEEECCCcceEEE
Confidence 568889999999999998754 45554422 111 14443 2 246789999999999999999997553
No 43
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=52.35 E-value=22 Score=35.95 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.3
Q ss_pred eeecceeeEEEEEEcCCCCceeeEEEEEEE
Q 013283 97 IYLGETFCSYISINNSSTLEVRDVVIKAEI 126 (446)
Q Consensus 97 iylGEtF~~~i~v~N~s~~~v~~V~ikvel 126 (446)
-|-||+....++|+|+|+..|+.|.+++.-
T Consensus 205 Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q 234 (392)
T 1suj_A 205 YYHGEPINVNVKINNTTGKIVKKIKIIVEQ 234 (392)
T ss_dssp EETTCCEEEEEEEEECSSSEEEEEEEEEEE
T ss_pred ccCCCEEEEEEEEECCCCCcEeEEEEEEEE
Confidence 367999999999999999999998887654
No 44
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=52.31 E-value=43 Score=27.41 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=45.7
Q ss_pred CCCeEEEEEecCceEE-------eCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEE
Q 013283 325 SKEIELNVVEVPSVVG-------IDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTD 397 (446)
Q Consensus 325 ~~dl~l~v~~~P~~v~-------v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~ 397 (446)
..++++.|..-..... |+- ..+++|.|.++.... +.+.++.- +++-|.|... + .++|++..+
T Consensus 8 R~~~~l~V~rdR~~Ly~~~~dG~I~N--~Ytlki~Nkt~~~~~-~~l~v~g~-----~~l~~~g~~~--i-~v~~g~~~~ 76 (118)
T 2r39_A 8 VDPAGMSVIRDRNQLFRVNSAGEVEN--TYTLKVINKTQQVQE-YNLDVKGL-----NDVSWYGKQT--I-QVEPGEVLN 76 (118)
T ss_dssp CCSEEEEEEECSSCCCCC--CCSEEE--EEEEEEEECSSSCEE-EEEEEESC-----SSCEEESCCE--E-EECTTCEEE
T ss_pred cCccEEEEEecCCceEEEcCCCeEEE--EEEEEEEECCCCCEE-EEEEEeCC-----cccEEeCCCc--E-EECCCCEEE
Confidence 4556666655443221 222 256789999999887 88888653 3588888653 4 679999888
Q ss_pred EEEEEEe
Q 013283 398 FHLNLIA 404 (446)
Q Consensus 398 ~~L~l~p 404 (446)
+.+.+..
T Consensus 77 ~~v~v~~ 83 (118)
T 2r39_A 77 LPMSLGA 83 (118)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8777654
No 45
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=50.16 E-value=73 Score=28.90 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=53.5
Q ss_pred ccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccc-cc----e
Q 013283 92 QAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKEL-GA----H 166 (446)
Q Consensus 92 ~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~-G~----h 166 (446)
-.||.+- |+.-...+.+.|....++.--.+ ....+-....+. -..++||++.+..|.|+-+.. |. +
T Consensus 126 ~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v--~~scgct~~~~~------~~~i~PGe~~~i~v~~~~~~~~g~~~~~~ 196 (220)
T 2qsv_A 126 LDMGQLD-GETTKAAIEIRNVGAGPLRLHSV--TTRNPALTAVPD------RTEIKPGGSTLLRIAVDPQVMKAEGWQSI 196 (220)
T ss_dssp EEEEECT-TSCEEEEEEEEECSSSCEEEEEE--EECSTTEEEEES------CSEECTTCEEEEEEEECHHHHHHTTCSEE
T ss_pred EeeeccC-CCeEEEEEEEEECCCCCEEEEEE--EeCCCCEeeecC------CccCCCCCEEEEEEEEecCCCCCccccee
Confidence 3799999 99999999999998775543322 222222222221 125899999999999999988 88 7
Q ss_pred EEEEEEEEEeC
Q 013283 167 TLVCTALYSDG 177 (446)
Q Consensus 167 ~L~c~VsY~~~ 177 (446)
.-.++|.-.++
T Consensus 197 ~~~i~v~~N~~ 207 (220)
T 2qsv_A 197 AADISIICNDP 207 (220)
T ss_dssp EEEEEEEESCT
T ss_pred ccEEEEEECCC
Confidence 77777733333
No 46
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=49.35 E-value=73 Score=29.76 Aligned_cols=79 Identities=15% Similarity=0.072 Sum_probs=49.2
Q ss_pred ccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCC---CCccccCCCCeeeEEEEEEccccc
Q 013283 88 LVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSK---SPVESIRAGGRYDFIVEHDVKELG 164 (446)
Q Consensus 88 L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~---~~~~~L~pg~~ld~iv~~~lke~G 164 (446)
++||.++ -.||.|..-..|.|..++. +.++|.|..... +.+..... .....+.+++.....+...-+++|
T Consensus 86 ~~LP~sv---~rGE~~~l~~~V~Ny~~~~---~~v~V~l~~~~~-~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p~~~G 158 (252)
T 3hrz_B 86 LQMPYSV---VKNEQVEIRAILHNYVNED---IYVRVELLYNPA-FCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQG 158 (252)
T ss_dssp ECCCSCE---ETTCCEEEEEEEEECSSSC---EEEEEEECCCTT-EEESCCSSCCEEEEEEECTTEEEEEEEEEEECSSE
T ss_pred cCCCcEE---eeCCEEEEEEEEEcccCce---EEEEEEEEcCCc-eEeecCCCCceEEEEEECCCCeEEEEEEEEeccCC
Confidence 6888875 4799999999999997654 455666654432 21111100 111246677654444444457899
Q ss_pred ceEEEEEEE
Q 013283 165 AHTLVCTAL 173 (446)
Q Consensus 165 ~h~L~c~Vs 173 (446)
.|.+.+++.
T Consensus 159 ~~~i~v~A~ 167 (252)
T 3hrz_B 159 LHDVEIKAS 167 (252)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 999888875
No 47
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=47.95 E-value=30 Score=30.02 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=35.9
Q ss_pred EEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEEEEEEEecc
Q 013283 346 LLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDFHLNLIATK 406 (446)
Q Consensus 346 ~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~ 406 (446)
.-.++|+|.++..+. ..+.... -.-+.+.= ..|.|+|++++++.+.+.|..
T Consensus 38 ~~~l~L~N~s~~~Va---FKVKTT~---p~~y~VrP----~~GiI~P~~s~~V~V~lq~~~ 88 (152)
T 1wic_A 38 KTLIVLTNVTKNIVA---FKVRTTA---PEKYRVKP----SNSSCDPGASIDIIVSPHGGL 88 (152)
T ss_dssp CEEEEEEBCSSSCEE---EEEEESC---TTTEEEES----SEEEECTTCEEEEEEEECSSS
T ss_pred EEEEEEEcCCCCeEE---EEEECCC---CCceeecC----CCcEECCCCeEEEEEEecCcc
Confidence 478999999887654 4444432 12354443 378899999999999997753
No 48
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=43.95 E-value=1.3e+02 Score=24.98 Aligned_cols=78 Identities=6% Similarity=-0.018 Sum_probs=49.4
Q ss_pred cccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccce
Q 013283 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAH 166 (446)
Q Consensus 87 ~L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h 166 (446)
-|.||-|+ =-||.|..-+.|.|.-.. .+.++|.|.... .+....+.. .-.-|.+++. ..+.++++-+|+.
T Consensus 11 ~l~lPysv---~rgE~~~~~~~V~nyl~~---~~~v~v~L~~s~-~~~~~~~~~-~t~Clc~~~~--~t~~W~i~~lg~v 80 (118)
T 3es6_B 11 NFDIPKSV---RPNDEVTAVLAVQTELKE---CMVVKTYLISSI-PLQGAFNYK-YTACLCDDNP--KTFYWDFYTNRTV 80 (118)
T ss_dssp CCCCCSEE---CSSCCEEEEEEEEECCSS---CEEEEEEEEESS-CCCSGGGCE-EEEEECSSSC--EEEEEEECCSSCE
T ss_pred EeeCCceE---ecCCEEEEEEEEEecccc---eEEEEEEecCCc-CEEccCCCc-ccEEecCCCc--eEEEEEEEeCCeE
Confidence 47788764 569999999999999765 456666665432 221111110 0112555553 3566778889999
Q ss_pred EEEEEEEE
Q 013283 167 TLVCTALY 174 (446)
Q Consensus 167 ~L~c~VsY 174 (446)
.+.+++.=
T Consensus 81 niTvsAea 88 (118)
T 3es6_B 81 QIAAVVDV 88 (118)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99888753
No 49
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=40.77 E-value=65 Score=31.86 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=58.1
Q ss_pred EEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCC-ceeEEEecccceeeeeeCCCCeEEEEEEEEecc-------cceE
Q 013283 339 VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDE-EKVVMINGLRIMALAPVEAFGSTDFHLNLIATK-------LGVQ 410 (446)
Q Consensus 339 v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~-~~~~~~~G~s~~~Lg~L~P~~s~~~~L~l~pl~-------~Glq 410 (446)
|+..++-+-++.|+|.+.-... +.+.-..+++.. .+++-+. + .=|.|+|+++.++.+++..-. .|-+
T Consensus 42 v~~~~~~~~~l~i~N~g~~pa~-f~f~~~~~~~~~~~~wl~v~-p---~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g~~ 116 (366)
T 3qis_A 42 VKFRQLQKEKFQISNNGQVPCH-FSFIPKLNDSQYCKPWLRAE-P---FEGYLEPNETVDISLDVYVSKDSVTILNSGED 116 (366)
T ss_dssp ECBTCCEEEEEEEEECSSSCEE-EEEECCTTCSSSSCTTEEEE-S---CEEEECTTCEEEEEEEECBCTTTHHHHHHTSS
T ss_pred eeeCCeEEEEEEEEecCCceEE-EEEEeCCCCCCCCCCcEEEe-C---CccEECCCCEEEEEEEEEECHHHHHHHhcCcc
Confidence 6789999999999999888776 655433322111 1224443 3 246899999999999998655 5677
Q ss_pred EeCceEEEeCCCCeEe
Q 013283 411 RITGITVFDKLEKITY 426 (446)
Q Consensus 411 ~isgI~l~D~~~~~~y 426 (446)
.+..|-+.-...++.|
T Consensus 117 ~l~diLvL~ve~G~d~ 132 (366)
T 3qis_A 117 KIEDILVLHLDRGKDY 132 (366)
T ss_dssp CSCEEEEEEETTSCEE
T ss_pred ccceEEEEEEeCCCcE
Confidence 7777777766666665
No 50
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=39.12 E-value=84 Score=31.55 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=55.4
Q ss_pred CCCCCeEEEEEecCce-EEeCCcEEEEEEEEeCCCCccccEEEEEEeCC-----CCCceeEEEecccceeeeeeCCCCeE
Q 013283 323 ITSKEIELNVVEVPSV-VGIDKPFLLKLKLTNQTDKEQGPFEIWLSQND-----SDEEKVVMINGLRIMALAPVEAFGST 396 (446)
Q Consensus 323 ~~~~dl~l~v~~~P~~-v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~-----~~~~~~~~~~G~s~~~Lg~L~P~~s~ 396 (446)
...+.+.+.+ .+|.. ..-+++..+++.|.|+|.+.+..+.+.|.... .....-..++-.. .-..+.|+++.
T Consensus 192 ~~sG~l~l~~-sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~~~~s~~~~k~~Va~~e--~~~~V~~gs~~ 268 (393)
T 1g4m_A 192 MSDKPLHLEA-SLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEE--ADDTVAPSSTF 268 (393)
T ss_dssp SSSSCEEEEE-EESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSSBCEEEEEEEEEEE--ECCCBCTTEEE
T ss_pred EcCCCEEEEE-EECCceEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEEEEecCCceEEEEEEEe--cCCcCCCCCEE
Confidence 4567777665 67766 67899999999999999999887888876631 0000001111111 01258899998
Q ss_pred EEEEEEEecccc
Q 013283 397 DFHLNLIATKLG 408 (446)
Q Consensus 397 ~~~L~l~pl~~G 408 (446)
...+.|+|+.+-
T Consensus 269 ~~~~~L~P~l~p 280 (393)
T 1g4m_A 269 CKVYTLTPFLAN 280 (393)
T ss_dssp EEEEEECCCGGG
T ss_pred eeEEEEcCCCCC
Confidence 889999888763
No 51
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=36.20 E-value=79 Score=27.89 Aligned_cols=72 Identities=14% Similarity=0.024 Sum_probs=47.2
Q ss_pred CceEEeCCcEEEEEEEEeCCCC-ccccEEEEEEeCCCCCceeEEEecccc----eee-ee-eCCCC--eEEEEEEEEecc
Q 013283 336 PSVVGIDKPFLLKLKLTNQTDK-EQGPFEIWLSQNDSDEEKVVMINGLRI----MAL-AP-VEAFG--STDFHLNLIATK 406 (446)
Q Consensus 336 P~~v~v~~PF~v~~~v~N~s~r-~~~~l~v~l~~~~~~~~~~~~~~G~s~----~~L-g~-L~P~~--s~~~~L~l~pl~ 406 (446)
.+.+..++++++++++.-+.+- ... +-+.++... +..+.|... ..+ .. +.+|. +++|.+. ++|.
T Consensus 63 ~~~~~~Ge~v~l~i~~~~~~~i~~~v-~G~~Ik~~~-----G~~I~g~nT~~~~~~~~~~~~~~G~~~~v~f~f~-l~L~ 135 (188)
T 2r5o_A 63 PPSLTGNQQTDFLMKVVFEYDFDCVV-PGILIKTLD-----GLFLYGTNSFLASEGRENISVSRGDVRVFKFSLP-VDLN 135 (188)
T ss_dssp CSSEETTCEEEEEEEEEESSCEEEEE-EEEEEEETT-----CCEEEEEEHHHHTTTCCCEEECTTCEEEEEEEEE-CCBC
T ss_pred eeEEeCCCEEEEEEEEEECCcCCccE-EEEEEECCC-----CCEEEecCcccccccccccccCCCCEEEEEEEEe-cccC
Confidence 4557899999999999877432 222 455666543 444455432 234 44 67888 5667788 4999
Q ss_pred cceEEeCc
Q 013283 407 LGVQRITG 414 (446)
Q Consensus 407 ~Glq~isg 414 (446)
+|--.|+=
T Consensus 136 ~G~Y~lsv 143 (188)
T 2r5o_A 136 SGDYLLSF 143 (188)
T ss_dssp SEEEEEEE
T ss_pred CCeEEEEE
Confidence 99998874
No 52
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=35.45 E-value=46 Score=31.84 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=56.5
Q ss_pred eeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCc---eeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEEE
Q 013283 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ---RILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTAL 173 (446)
Q Consensus 97 iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~---r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~Vs 173 (446)
-|-|......+-+.|-++.+++++++.++ .+.. .+.+ .....+ ..|.||+..+..+..+++++=...-...++
T Consensus 64 e~~~~~g~i~L~~gNKs~~~it~f~~~i~--~~~~~~~~l~~-~~~~~~-~tI~p~~q~qq~i~v~~~~pF~~~P~l~is 139 (273)
T 3hs8_A 64 EFRQNLGRMFIFYGNKTSTQFLNFTPTLI--CADDLQTNLNL-QTKPVD-PTVDGGAQVQQVVNIECISDFTEAPVLNIQ 139 (273)
T ss_dssp EEETTEEEEEEEEEECSSSCBBSCCCEEE--CCTTHHHHEEE-EECCCC-SCBCTTCEEEEEEEEEECSCCCCCCEEEEE
T ss_pred EEeCceEEEEEEEEcCCCCcceeEEEEEE--CCCCCCcceEE-EecCCC-CeECCCCEEEEEEEEEEcccccCCCEEEEE
Confidence 57888999999999999999998877554 4431 1221 111122 579999999999999999886667788888
Q ss_pred EEe
Q 013283 174 YSD 176 (446)
Q Consensus 174 Y~~ 176 (446)
|..
T Consensus 140 f~~ 142 (273)
T 3hs8_A 140 FRY 142 (273)
T ss_dssp EEE
T ss_pred EEE
Confidence 975
No 53
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=34.98 E-value=61 Score=26.43 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=42.9
Q ss_pred cceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEE
Q 013283 95 GAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTA 172 (446)
Q Consensus 95 G~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~V 172 (446)
+.+.+|+.....|...+.. - .++|++..++.+..- . .+...+.=...|.|--+|.|.|.+.+.+
T Consensus 22 ~~~~vg~~~~F~V~~~~a~-g-----~l~v~V~~P~g~~~~-----~---~v~d~~~gty~v~ytP~~~G~h~v~V~~ 85 (112)
T 2d7p_A 22 TGLKVNQPASFAVQLNGAR-G-----VIDARVHTPSGAVEE-----C---YVSELDSDKHTIRFIPHENGVHSIDVKF 85 (112)
T ss_dssp BCCCTTCCEEEEEECTTCC-S-----CEEEEEECSSSCBCC-----C---EECSCBTTEEEEEECCSSCEEEEEEEEE
T ss_pred CCcccCCcEEEEEEeCCCC-C-----CEEEEEECCCCCeee-----e---EEEeCCCCeEEEEEEcCCCEeEEEEEEE
Confidence 3478899888888887653 1 567888887654211 1 1222222246899999999999988764
No 54
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=33.14 E-value=22 Score=29.96 Aligned_cols=70 Identities=9% Similarity=-0.018 Sum_probs=42.7
Q ss_pred ecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEE--EEEEEEeccc
Q 013283 334 EVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTD--FHLNLIATKL 407 (446)
Q Consensus 334 ~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~--~~L~l~pl~~ 407 (446)
--|+....+...+|+..|+|.-........|.+--++. ...+. ..| ...++.|.+|++.. +.++.-++..
T Consensus 7 ~sP~~p~~g~~vTvsatVkN~Gt~~s~a~~V~~yl~~p-~~gg~-~vg--t~tv~~LaaG~s~t~~v~~~~~~~~~ 78 (122)
T 2kut_A 7 LSKETPFEGEEITVSARVTNRGAAEAHNVPVAVYLGNP-AQGGV-EIG--RDTISRIPVGGTGLARVQWKATRKLA 78 (122)
T ss_dssp CCTTSCCTTCEEEEEEEEECCSSSCBCCCCEEECSSCT-TTCCC-CCB--CCCCSCBCTTCEEECCEEEECCCCCS
T ss_pred cCCCCCCCCCeEEEEEEEEeCCCcccCcEEEEEEeCCC-ccCCe-EEe--eEEccccCCCCeEEEEEEEecCCccc
Confidence 46888999999999999999854433324444433220 01111 222 23468899999999 5555544443
No 55
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=29.29 E-value=3.6e+02 Score=28.94 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=47.4
Q ss_pred cccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCceeecc-CCCCCCccccCCCCeeeEEEEEEcccccceE
Q 013283 89 VLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLL-DTSKSPVESIRAGGRYDFIVEHDVKELGAHT 167 (446)
Q Consensus 89 ~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~-~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~ 167 (446)
+||.+ +-.||.|..-+.|.|..... +.++|.|..... +.+. ......--.+.+|+.-...+....+.+|.+.
T Consensus 159 ~lP~~---v~~GD~~~i~~~V~N~~~~~---~~v~v~l~~~~~-~~~~~~~~~~~~~~v~a~~~~~v~f~i~~~~~G~~~ 231 (767)
T 4fxk_B 159 RLPMS---VRRFEQLELRPVLYNYLDKN---LTVSVHVSPVEG-LCLAGGGGLAQQVLVPAGSARPVAFSVVPTAAAAVS 231 (767)
T ss_dssp CCCSC---EETTCEEEECCEEEECSSSC---EEEEEEECCCTT-EECSSSSCCCEEEEECSSCEEECCEEEEECSCSEEE
T ss_pred CCCCe---eccCCEEEEEEEEEECCCCC---EEEEEEEEecCC-eEEecCCceeEEEEEcCCCeEEEEEEEEECccCcEE
Confidence 45554 67899999999999997653 445566654432 2221 1111112257777754433344557889998
Q ss_pred EEEEEE
Q 013283 168 LVCTAL 173 (446)
Q Consensus 168 L~c~Vs 173 (446)
+.+++.
T Consensus 232 i~v~A~ 237 (767)
T 4fxk_B 232 LKVVAR 237 (767)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877654
No 56
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=27.51 E-value=93 Score=29.04 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=56.5
Q ss_pred eeecceeeEEEEEEcCCCCceeeEEEEEEEeCCCc---eeeccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEEEE
Q 013283 97 IYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQ---RILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTAL 173 (446)
Q Consensus 97 iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s~---r~~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~Vs 173 (446)
-|-|..-...+.+.|-++.+++++.+.++- +.. ...+.. ......+.||+..+..+..++.+.=...-...++
T Consensus 38 e~~~~~gri~l~~gNKs~~~l~~f~~~i~~--~~~~~~~l~~~~--~~~~~~I~~~~q~qq~i~v~~~~~f~~~P~l~is 113 (247)
T 1kyf_A 38 EFRQNLGRMFIFYGNKTSTQFLNFTPTLIC--ADDLQTNLNLQT--KPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQ 113 (247)
T ss_dssp EEETTEEEEEEEEEECSSSCBEEEEEEEEC--CHHHHHHEEEEE--CCCCSCBCTTCEEEEEEEEEECSCCCCCCEEEEE
T ss_pred EEeCCeEEEEEEEEcCCCCceeeEEEEEec--CcccCCCeeEec--CCCCceeCCCcEEEEEEEEEEccccCCCCEEEEE
Confidence 466777788889999998899998776653 321 122211 1122369999999999999999988778889999
Q ss_pred EEeC
Q 013283 174 YSDG 177 (446)
Q Consensus 174 Y~~~ 177 (446)
|..+
T Consensus 114 f~~~ 117 (247)
T 1kyf_A 114 FRYG 117 (247)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9764
No 57
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=26.91 E-value=2.6e+02 Score=22.94 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=48.2
Q ss_pred eeEEEEEEcCCCCceeeEEEEEEEeCCCceeeccCCCCCCccccCC--CCeeeEEEEEEcccccceEEEEEEEEEeC
Q 013283 103 FCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRA--GGRYDFIVEHDVKELGAHTLVCTALYSDG 177 (446)
Q Consensus 103 F~~~i~v~N~s~~~v~~V~ikvelqT~s~r~~L~~~~~~~~~~L~p--g~~ld~iv~~~lke~G~h~L~c~VsY~~~ 177 (446)
....+.+.|.+..+|+++.+.|-+ +.+.++.|...+ ..+|.| ++.+..++...=..-..=.|.+.|+|+..
T Consensus 31 ~~i~~~~~N~s~~~it~f~fqaAV-PKs~kL~L~p~S---g~~l~p~~~~~itQ~l~i~n~~~~~lklR~klsY~~~ 103 (122)
T 3zy7_A 31 TVITIQASNSTELDMTDFVFQAAV-PKTFQLQLLSPS---SSVVPAFNTGTITQVIKVLNPQKQQLRMRIKLTFNWN 103 (122)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEEC-CTTSEEEECCCS---CSCBCGGGSCCEEEEEEEECTTCCCCCEEEEEEEEET
T ss_pred EEEEEEEEECCCCccccEEEEEEc-CcccEEEecCCC---CCccCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEC
Confidence 567788889988899999988754 455667664322 225666 66677776665443334568888999864
No 58
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=26.90 E-value=1.7e+02 Score=24.22 Aligned_cols=38 Identities=8% Similarity=0.187 Sum_probs=28.8
Q ss_pred cccccccccceeecceeeEEEEEEcCCCCceeeEEEEEEEeCCC
Q 013283 87 LLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDK 130 (446)
Q Consensus 87 ~L~LP~sfG~iylGEtF~~~i~v~N~s~~~v~~V~ikvelqT~s 130 (446)
-|+||.| +=-||.|...+.|-|.-++ -+.|++.|....
T Consensus 11 eltlPyS---v~rgE~f~lkatVfNyL~~---Ci~V~v~L~~S~ 48 (118)
T 2icn_B 11 NFDIPKS---VRPNDEVTAVLAVQTELKE---CMVVKTYLISSI 48 (118)
T ss_dssp CCCCCSE---ECSSCCEEEEEEEEECCSS---CEEEEEEEEESS
T ss_pred EEeCCCc---ccCCCEEEEEEEEEeccCc---CEEEEEEEcCCC
Confidence 4688886 6789999999999999765 456666666443
No 59
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=21.88 E-value=2.4e+02 Score=22.76 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=39.4
Q ss_pred eEEEEEEcCCCCceeeEEEEEEEeCCCcee-eccCCCCCCccccCCCCeeeEEEEEEcccccceEEEEE
Q 013283 104 CSYISINNSSTLEVRDVVIKAEIQTDKQRI-LLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCT 171 (446)
Q Consensus 104 ~~~i~v~N~s~~~v~~V~ikvelqT~s~r~-~L~~~~~~~~~~L~pg~~ld~iv~~~lke~G~h~L~c~ 171 (446)
+|.+.+.|.++. .|.+||- |.+.+. .... ..+-+.||++.+..|.+.--+...|-+.+.
T Consensus 18 ~~~l~L~N~t~~---~vaFKVK--tT~p~~y~VrP----~~G~I~P~~~~~i~I~~q~~~~~~dKflvq 77 (109)
T 1row_A 18 SSTHKLVNGGAE---KIVFKIK--SSNNNEYRIAP----VFGFVDPSGSKDVVITRTAGAPKEDKLVVH 77 (109)
T ss_dssp EEEEEEEECSSS---CEEEEEE--ESCSSSEEEEC----SEEEECTTEEEEEEEEECSCCCEEEEEEEE
T ss_pred eEEEEEEcCCCC---eEEEEEE--eCCCCceEEcC----CceEECCCCeEEEEEEeCCCCCCCCEEEEE
Confidence 599999999875 4566653 443322 2211 245789999999999888766666666544
No 60
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=21.33 E-value=1.5e+02 Score=25.65 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=43.6
Q ss_pred CCCCeEEEEEecCceEEeCCcEEEEEEEEeCCCCccccEEEEEEeCCCCCceeEEEecccceeeeeeCCCCeEEE
Q 013283 324 TSKEIELNVVEVPSVVGIDKPFLLKLKLTNQTDKEQGPFEIWLSQNDSDEEKVVMINGLRIMALAPVEAFGSTDF 398 (446)
Q Consensus 324 ~~~dl~l~v~~~P~~v~v~~PF~v~~~v~N~s~r~~~~l~v~l~~~~~~~~~~~~~~G~s~~~Lg~L~P~~s~~~ 398 (446)
+-+.|-+.++=+|--.+--.-=.++|.+.|.|+..+. ......... .|.+. .-|.|+|+....+
T Consensus 7 gg~~l~vyLAfvP~n~k~~~~t~fe~YlVNdSNy~l~-f~y~~~~~~-------~w~l~---~~G~iePntk~~i 70 (147)
T 2huh_A 7 GGDTLNVFLAYVPEDAKAMMTTPFEAYLVNDSNYYLY-YTYLSAEGK-------AWNNR---SHGLVEPNTKLLL 70 (147)
T ss_dssp TTTSCCEEEEEEESCTTCTTTCCEEEEEEECSSSEEE-EEEEEEETT-------EEEEE---EEEEECTTEEEEE
T ss_pred CCcEEEEEEEEEecchhhccCcceEEEEEeCCCcEEE-EEEEEeeCC-------eEEEE---EeeEECCCcEEEE
Confidence 4455667777777555555445568999999999987 666555432 26554 4778999987655
Done!