BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013284
         (446 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
 pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
          Length = 380

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 8/120 (6%)

Query: 99  YTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDS 158
           Y NT C+ +     C+KY  P  + +   W+ +   L      QF++ V      FV D+
Sbjct: 258 YLNTNCFEVTIELGCVKY--PKAEELPKYWEQNRRSL-----LQFIKQVHRGIWGFVLDA 310

Query: 159 VARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYTSYNFTLATFWTPHLVKSKEADSDG 218
                + +    ++ + +PV  +Y   + ++     +Y  T +      + K+ E DS G
Sbjct: 311 TDGRGILNATISVADINHPV-TTYKDGDYWRLLVQGTYKVTASARGYDPVTKTVEVDSKG 369


>pdb|2XDQ|A Chain A, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
           Chlb)2 Complex
          Length = 460

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 82  KCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPS 141
           KC + +    P P GP  T T    I         G  + +   W+   D          
Sbjct: 264 KCQLITA---PFPIGPDGTRTWIEQICATFGIQPQGLAEREAETWQKLSD---------- 310

Query: 142 QFLEIVRGKSMAFVGDSV 159
            +LE+VRGKS+ F+GD++
Sbjct: 311 -YLELVRGKSVFFMGDNL 327


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,204,625
Number of Sequences: 62578
Number of extensions: 619266
Number of successful extensions: 1032
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 2
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)