BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013284
         (446 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A6VL65|RSMG_ACTSZ Ribosomal RNA small subunit methyltransferase G OS=Actinobacillus
           succinogenes (strain ATCC 55618 / 130Z) GN=rsmG PE=3
           SV=1
          Length = 211

 Score = 38.9 bits (89), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 18/114 (15%)

Query: 132 GCELPIFNPSQFLEIVR--GKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFK 189
           G  L I NP +   ++   GK M+F+ ++V   ++ ++  +LSRVE      Y P+ +F 
Sbjct: 88  GLPLAIINPDKKFVLLDSLGKRMSFIRNAVRELELTNVEPVLSRVE-----EYIPDHKFD 142

Query: 190 RWRYTSY-NFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDD 242
                ++ +    T W  HL          P N GLF     +++E+   Q+D+
Sbjct: 143 GVLSRAFASLKDMTDWCSHL----------PVNNGLFYALKGQYNEDEIKQLDE 186


>sp|A4D0V7|CPED1_HUMAN Cadherin-like and PC-esterase domain-containing protein 1 OS=Homo
           sapiens GN=CPED1 PE=2 SV=1
          Length = 1026

 Score = 34.7 bits (78), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 120 DTDFMKWR---WKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLI 168
           D     WR   W+P  C+  +    Q  + + G+ + F+GDS  R  M  LI
Sbjct: 736 DNRTCDWREITWQPHNCQYGVLTKPQLQQCLGGRKILFIGDSTNRGIMYYLI 787


>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 32.0 bits (71), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 128 WKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLS 172
           W+P GC L  +  ++    +R K +AFVGDS  R    S I +++
Sbjct: 64  WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMN 108


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,997,753
Number of Sequences: 539616
Number of extensions: 8215533
Number of successful extensions: 16340
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16337
Number of HSP's gapped (non-prelim): 4
length of query: 446
length of database: 191,569,459
effective HSP length: 121
effective length of query: 325
effective length of database: 126,275,923
effective search space: 41039674975
effective search space used: 41039674975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)