BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013285
(446 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis
thaliana GN=RPT2A PE=2 SV=1
Length = 443
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/446 (95%), Positives = 436/446 (97%), Gaps = 3/446 (0%)
Query: 1 MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 60
MGQG GGLNRQG DRK DG DKK+KKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP
Sbjct: 1 MGQGPSGGLNRQG---DRKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 57
Query: 61 LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
+KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEE
Sbjct: 58 STKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEE 117
Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVM
Sbjct: 118 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVM 177
Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
KVEKAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL
Sbjct: 178 KVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 237
Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR
Sbjct: 238 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 297
Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP
Sbjct: 298 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 357
Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420
LPDIKTRRRIFQIHTS+MTL++DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV
Sbjct: 358 LPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 417
Query: 421 THTDFKKAKEKVMFKKKEGVPEGLYM 446
TH DFKKAKEKVMFKKKEGVPEGLYM
Sbjct: 418 THPDFKKAKEKVMFKKKEGVPEGLYM 443
>sp|Q9SL67|PRS4B_ARATH 26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis
thaliana GN=RPT2B PE=2 SV=1
Length = 443
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/446 (95%), Positives = 436/446 (97%), Gaps = 3/446 (0%)
Query: 1 MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 60
MGQG GGLNRQG DRK DG +KK+KKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP
Sbjct: 1 MGQGPSGGLNRQG---DRKPDGGEKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 57
Query: 61 LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
+KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEE
Sbjct: 58 STKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEE 117
Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVM
Sbjct: 118 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVM 177
Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
KVEKAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL
Sbjct: 178 KVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 237
Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR
Sbjct: 238 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 297
Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
YDA+SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP
Sbjct: 298 YDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 357
Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420
LPDIKTRRRIFQIHTS+MTLA+DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV
Sbjct: 358 LPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 417
Query: 421 THTDFKKAKEKVMFKKKEGVPEGLYM 446
TH DFKKAKEKVMFKKKEGVPEGLYM
Sbjct: 418 THVDFKKAKEKVMFKKKEGVPEGLYM 443
>sp|P46466|PRS4_ORYSJ 26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp.
japonica GN=TBP2 PE=2 SV=2
Length = 448
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/449 (92%), Positives = 433/449 (96%), Gaps = 4/449 (0%)
Query: 1 MGQGTPGGLNRQGPG-GDRK--GDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPT 57
MGQGTPGG+ +QG GDRK GDG DKKD+KFEP A P+RVGRKQRKQKGPEAAARLP
Sbjct: 1 MGQGTPGGMGKQGGAPGDRKPGGDG-DKKDRKFEPPAAPSRVGRKQRKQKGPEAAARLPN 59
Query: 58 VTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGN 117
V PLSKC+LRLLKLER+KDYLLMEEEFV QERL+P E+K EEDRSKVDDLRG+PMSVG+
Sbjct: 60 VAPLSKCRLRLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGS 119
Query: 118 LEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMV 177
LEE+IDE+HAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMV
Sbjct: 120 LEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMV 179
Query: 178 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTG 237
SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI+PPKGVILYGEPGTG
Sbjct: 180 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTG 239
Query: 238 KTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVG 297
KTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD+LSPSIVFIDEIDAVG
Sbjct: 240 KTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVG 299
Query: 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKI 357
TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKI
Sbjct: 300 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKI 359
Query: 358 EFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 417
EFPLPDIKTRRRIFQIHTS+MTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR
Sbjct: 360 EFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 419
Query: 418 MKVTHTDFKKAKEKVMFKKKEGVPEGLYM 446
MKVTH DFKKAKEKVMFKKKEGVPEGLYM
Sbjct: 420 MKVTHADFKKAKEKVMFKKKEGVPEGLYM 448
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/439 (77%), Positives = 396/439 (90%), Gaps = 1/439 (0%)
Query: 8 GLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLR 67
G N+ GG + K KK+EP P RVG+K+R+ KGP+AA +LP VTP ++C+L+
Sbjct: 2 GQNQSAQGGAGEKKDDKDKKKKYEPPIP-TRVGKKKRRAKGPDAAMKLPQVTPHTRCRLK 60
Query: 68 LLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHA 127
LLKLERIKDYL+ME+EF+ NQERLKPQ+EK EE+RSKVDDLRG+PMSVGNLEE+ID+NHA
Sbjct: 61 LLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHA 120
Query: 128 IVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPL 187
IVS+SVG E+YV ILSFVDKDQLEPGC++L+++KV +VVG+L D+ DPMV+VMK+EKAP
Sbjct: 121 IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQ 180
Query: 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN 247
E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN
Sbjct: 181 ETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 240
Query: 248 STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGG 307
TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDAVGTKRYD++SGG
Sbjct: 241 QTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 300
Query: 308 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR 367
EREIQRTMLELLNQLDGFDSRGDVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT+
Sbjct: 301 EREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 360
Query: 368 RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 427
RRIF IHTSRMTLA+DVNL E +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DFKK
Sbjct: 361 RRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 420
Query: 428 AKEKVMFKKKEGVPEGLYM 446
+KE V+++KKEG PEGLY+
Sbjct: 421 SKESVLYRKKEGTPEGLYL 439
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/417 (78%), Positives = 386/417 (92%), Gaps = 1/417 (0%)
Query: 30 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQE 89
+EP P RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE
Sbjct: 25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83
Query: 90 RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQ 149
++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD
Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143
Query: 150 LEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 209
LEPGC++L+++KV +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VEL
Sbjct: 144 LEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVEL 203
Query: 210 PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269
PLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDG
Sbjct: 204 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263
Query: 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329
PKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRG
Sbjct: 264 PKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323
Query: 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 389
DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDL 383
Query: 390 VMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 446
+M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DFKK+KE V++KK+EG PEGLY+
Sbjct: 384 IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/417 (78%), Positives = 386/417 (92%), Gaps = 1/417 (0%)
Query: 30 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQE 89
+EP P RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE
Sbjct: 25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83
Query: 90 RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQ 149
++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD
Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143
Query: 150 LEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 209
LEPGC++L+++KV +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VEL
Sbjct: 144 LEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVEL 203
Query: 210 PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269
PLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDG
Sbjct: 204 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263
Query: 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329
PKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRG
Sbjct: 264 PKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323
Query: 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 389
DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDL 383
Query: 390 VMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 446
+M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DFKK+KE V++KK+EG PEGLY+
Sbjct: 384 IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/417 (78%), Positives = 386/417 (92%), Gaps = 1/417 (0%)
Query: 30 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQE 89
+EP P RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE
Sbjct: 25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83
Query: 90 RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQ 149
++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD
Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143
Query: 150 LEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 209
LEPGC++L+++KV +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VEL
Sbjct: 144 LEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVEL 203
Query: 210 PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269
PLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDG
Sbjct: 204 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263
Query: 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329
PKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRG
Sbjct: 264 PKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323
Query: 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 389
DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDL 383
Query: 390 VMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 446
+M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DFKK+KE V++KK+EG PEGLY+
Sbjct: 384 IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/417 (78%), Positives = 382/417 (91%), Gaps = 1/417 (0%)
Query: 30 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQE 89
+EP P RVG+K++K KGP+AA++ P VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE
Sbjct: 25 YEPPVP-TRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83
Query: 90 RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQ 149
++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD
Sbjct: 84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143
Query: 150 LEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 209
LEPGC++L+++KV +V+G+L D+ DP+V+VMK+EKAP E+YADIGGLD QIQEIKE+VEL
Sbjct: 144 LEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVEL 203
Query: 210 PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269
PLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDG
Sbjct: 204 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263
Query: 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329
PKLVRELFRVA++ PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRG
Sbjct: 264 PKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323
Query: 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 389
DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L+E
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDEL 383
Query: 390 VMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 446
+M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DFKK+KE ++KK EG PEGLY+
Sbjct: 384 IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENFLYKKTEGTPEGLYL 440
>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
discoideum GN=psmC1 PE=1 SV=1
Length = 439
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/441 (73%), Positives = 387/441 (87%), Gaps = 8/441 (1%)
Query: 10 NRQGPGGDRKGDGADKKDK-KFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRL 68
N Q G +GD +KKD+ K++P PP + G+K +K++G E + +LP +TP SKCKL+
Sbjct: 3 NNQSQG---QGDKGEKKDQPKYQPPPPPTQFGKK-KKRRGAETSTKLPVITPHSKCKLKQ 58
Query: 69 LKLERIKDYLLMEEEFVTNQERLKP---QEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
LKLERIKDYLLME+EF+ N + +P + K + D +++LRG P++VGNLEE+ID+N
Sbjct: 59 LKLERIKDYLLMEQEFLQNYDLNQPKVDENSKEQADEKIIEELRGDPLTVGNLEEIIDDN 118
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
HAIVSS+VGPE+YV I+SFVDK +L G +L++NK LSVVG++ EVDPMV+VMKVEKA
Sbjct: 119 HAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKA 178
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P ESY+DIGGL+AQ+QE+KEA+ELPLTHPELYE+IGIKPPKGVILYGEPGTGKTLLAKAV
Sbjct: 179 PTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAV 238
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
AN TSATFLRVVGSELIQKYLGDGPKLVRELFRVAD+ +PSIVFIDEIDAVGTKRYD+ S
Sbjct: 239 ANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQS 298
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
GGEREIQRTMLELLNQLDGFD+R DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPDIK
Sbjct: 299 GGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIK 358
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
T+R+IF+IHT++M L++DVNLEEFVM+KD+ SGADIKAICTE+GLLALRERRM+VTHTDF
Sbjct: 359 TKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDF 418
Query: 426 KKAKEKVMFKKKEGVPEGLYM 446
KKAKEKV+++K G PEGLYM
Sbjct: 419 KKAKEKVLYRKTAGAPEGLYM 439
>sp|O16368|PRS4_CAEEL Probable 26S protease regulatory subunit 4 OS=Caenorhabditis
elegans GN=rpt-2 PE=3 SV=1
Length = 443
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/447 (74%), Positives = 398/447 (89%), Gaps = 5/447 (1%)
Query: 1 MGQGTPGGLNRQGPGGDR-KGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVT 59
MGQ G R G DR GDG K+ KK+E A P+R+G+K++ KGP+AA++LP VT
Sbjct: 1 MGQQQSGFGGR---GNDRGAGDGEKKEKKKYE-APIPSRIGKKKKGSKGPDAASKLPAVT 56
Query: 60 PLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLE 119
P ++C+L+LLK ERIKDYLLME+EF+ NQERLKPQEE+ EE+R+KVD+LRG+PM+VG+LE
Sbjct: 57 PHARCRLKLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLE 116
Query: 120 ELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSV 179
E+ID+ HAIVS++VG E+YV I+SFVDK+QLEPGC++L+++K +V+G+L D+ DPMVSV
Sbjct: 117 EIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSV 176
Query: 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKT 239
MK+EKAP E+YAD+GGLD QIQEIKEAVELPLTHPE YE++GI+PPKGVILYG PGTGKT
Sbjct: 177 MKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKT 236
Query: 240 LLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299
LLAKAVAN TSATFLR+VGSELIQKYLGDGPK+VRELFRVA++ +PSIVFIDEIDAVGTK
Sbjct: 237 LLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTK 296
Query: 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF 359
RYD++SGGEREIQRTMLELLNQLDGFDSRGDVKV++ATNRIESLDPAL+RPGRIDRKIEF
Sbjct: 297 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEF 356
Query: 360 PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMK 419
PLPD KT+RRIFQIHTSRMTL +VNLEEF+ KDE SGADIKA+CTEAGLLALRERRM+
Sbjct: 357 PLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMR 416
Query: 420 VTHTDFKKAKEKVMFKKKEGVPEGLYM 446
VT DF+K+KE V+++KKEG PE LY+
Sbjct: 417 VTMEDFQKSKENVLYRKKEGAPEELYL 443
>sp|P36612|PRS4_SCHPO 26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mts2 PE=2 SV=1
Length = 448
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/450 (68%), Positives = 377/450 (83%), Gaps = 6/450 (1%)
Query: 1 MGQGTPGGLNRQGPGGD-RKGDGADKKDKKFEPAAPPARVGRKQRK-QKGPEAAARLPTV 58
MGQ G + G G + K K+EP P R GR+++K Q GP+A+A+LPTV
Sbjct: 1 MGQAQSGNFSNFGDGANGDNKKDQKKDKPKYEPPVP-TRTGRRKKKAQSGPDASAKLPTV 59
Query: 59 TPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNL 118
P ++C+LRLLK++RI D+LLMEEE+V NQERLKPQ+E+ +E+R++VD++RG+PMSVG L
Sbjct: 60 IPTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTL 119
Query: 119 EELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVS 178
EE+ID++HAIVS++ GPEYYV I+SFVDKD LEPGC++L+H+K +S+VGLL D+ DPM++
Sbjct: 120 EEIIDDDHAIVSTA-GPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMIN 178
Query: 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 238
VMK++KAP ESYADIGGL++QIQEIKEAVELPLTHPELYE++GIKPPKGVILYG PGTGK
Sbjct: 179 VMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGK 238
Query: 239 TLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298
TLLAKAVAN TSATFLRVVGSELIQKYLGDGP+LVR+LF A++ SPSIVFIDEIDA+GT
Sbjct: 239 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGT 298
Query: 299 KRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRIESLDPALLRPGRIDRKI 357
KRYDA SG EREIQRTMLELLNQLDGFD S+ D+KVI+ATNRI LDPAL+RPGRIDRKI
Sbjct: 299 KRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKI 358
Query: 358 EFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 417
F PD T+R+IF IHTS+M L +DVNLEE + KD+ SGA+IKAI +EAGLLALRERR
Sbjct: 359 LFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERR 418
Query: 418 MKVTHTDFKKAKEKVMFKKKEGVPE-GLYM 446
M+V DF++A+EKV+ K EG P GLY+
Sbjct: 419 MRVVMDDFRQAREKVLKTKDEGGPAGGLYI 448
>sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT2 PE=1
SV=3
Length = 437
Score = 598 bits (1541), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/446 (66%), Positives = 376/446 (84%), Gaps = 9/446 (2%)
Query: 1 MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 60
MGQG G +++ G + K+EP ++ GRK+RK GP A +LP + P
Sbjct: 1 MGQGVSSGQDKKKKKGSNQ-------KPKYEPPVQ-SKFGRKKRK-GGPATAEKLPNIYP 51
Query: 61 LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
++CKL+LL++ERIKD+LL+EEEFV+N E LKP E+K EE++ +++++RG+P+S+G LEE
Sbjct: 52 STRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEE 111
Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
+ID++HAIV+S P+YYV ILSFVDK+ LEPGC++L+H+K +S+VG+LQD+ DPMVSVM
Sbjct: 112 IIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVM 171
Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
K++K+P ESY+DIGGL++QIQEIKE+VELPLTHPELYE++GIKPPKGVILYG PGTGKTL
Sbjct: 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 231
Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
LAKAVAN TSATFLR+VGSELIQKYLGDGP+L R++F+VA + +PSIVFIDEIDA+GTKR
Sbjct: 232 LAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKR 291
Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
YD++SGGEREIQRTMLELLNQLDGFD RGDVKVI+ATN+IE+LDPAL+RPGRIDRKI F
Sbjct: 292 YDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFE 351
Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420
PD+ T+++I IHTS+M L++DVNLE V TKD+ SGADI+A+CTEAGLLALRERRM+V
Sbjct: 352 NPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQV 411
Query: 421 THTDFKKAKEKVMFKKKEGVPEGLYM 446
T DFK+AKE+VM K E EGLY+
Sbjct: 412 TAEDFKQAKERVMKNKVEENLEGLYL 437
>sp|Q8SRH0|PRS4_ENCCU 26S protease regulatory subunit 4 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT2 PE=1 SV=1
Length = 424
Score = 517 bits (1331), Expect = e-146, Method: Compositional matrix adjust.
Identities = 265/405 (65%), Positives = 333/405 (82%), Gaps = 1/405 (0%)
Query: 41 RKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEE 100
R++R+ K +AA++ P V PL KCKLR LKL+++ L +E+ ++ E K E +
Sbjct: 20 RRRRRVKEGKAASKPPQVYPLMKCKLRYLKLKKLAHLLSLEDNILSLCEPDK-SSEGSNS 78
Query: 101 DRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN 160
+ V+ LRGSP+SVG LEE +D++H I+++ VG EYYV I+SFVDKD LEPGC +L++
Sbjct: 79 QKHVVEQLRGSPLSVGTLEEFVDDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNY 138
Query: 161 KVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDI 220
K SVVG+L+ E+DPMV+VMK+EKAP E+YADIGGL+ QIQEIKE+VELPLT+PELY+++
Sbjct: 139 KDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEM 198
Query: 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 280
GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVG+ELIQ+YLG+GPKLVRELFRVA
Sbjct: 199 GIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVA 258
Query: 281 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340
D +PSI+FIDEIDA+G KRY+ SGG RE+QRTMLELLNQLDGFD+R D+KVI+ATN+I
Sbjct: 259 DMHAPSIIFIDEIDAIGGKRYNTSSGGRREVQRTMLELLNQLDGFDTRNDIKVIMATNKI 318
Query: 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400
E+LDPAL+RPGRIDRKIEF +PD T+++IF IHTSRMTL + VN+E + +K++ SGAD
Sbjct: 319 EALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGAD 378
Query: 401 IKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLY 445
IKAICTEAG++ALRERR VT DF A+EKV F K++ V GLY
Sbjct: 379 IKAICTEAGMIALRERRKTVTMKDFISAREKVFFSKQKMVSAGLY 423
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/381 (50%), Positives = 278/381 (72%), Gaps = 8/381 (2%)
Query: 48 GPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVD 106
GP+ L + +K K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 25 GPQTFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 77
Query: 107 DLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVV 166
++ P+ +G E +D+N IV S+ G YYV ILS +D++ L+P ++ +H ++V
Sbjct: 78 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 137
Query: 167 GLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPK 226
+L E D +S+++ ++ P Y+DIGG+D Q QEI+EAVELPLTH ELY IGI+PP+
Sbjct: 138 DVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 197
Query: 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPS 286
GV++YG PG GKT+LA AVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + SP+
Sbjct: 198 GVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPA 257
Query: 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPA 346
I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPA
Sbjct: 258 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 317
Query: 347 LLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICT 406
LLRPGR+DRKIEFPLPD + +R IF T++M L+++V+LEEFV D SGADI AIC
Sbjct: 318 LLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQ 377
Query: 407 EAGLLALRERRMKVTHTDFKK 427
EAG+ A+RE R V DF+K
Sbjct: 378 EAGMNAVRENRYIVLPKDFEK 398
>sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4
PE=2 SV=1
Length = 418
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 278/373 (74%), Gaps = 4/373 (1%)
Query: 67 RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
R KL++ ++L ++EE++ + Q+ LK + A+E+ ++ + P+ +G E +D+N
Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
AIV S+ G YYV ILS +D++ L+P ++ +H ++V +L E D + ++ ++
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+R IF TS+M L+++V+LE++V D+ SGADI +IC E+G+LA+RE R V DF
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399
Query: 426 KKAKEKVMFKKKE 438
+KA + V+ K ++
Sbjct: 400 EKAYKTVIKKDEQ 412
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1
SV=2
Length = 418
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 278/373 (74%), Gaps = 4/373 (1%)
Query: 67 RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
R KL++ ++L ++EE++ + Q+ LK + A+E+ ++ + P+ +G E +D+N
Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
AIV S+ G YYV ILS +D++ L+P ++ +H ++V +L E D + ++ ++
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+R IF TS+M L+++V+LE++V D+ SGADI +IC E+G+LA+RE R V DF
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399
Query: 426 KKAKEKVMFKKKE 438
+KA + V+ K ++
Sbjct: 400 EKAYKTVIKKDEQ 412
>sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1
Length = 418
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 278/373 (74%), Gaps = 4/373 (1%)
Query: 67 RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
R KL++ ++L ++EE++ + Q+ LK + A+E+ ++ + P+ +G E +D+N
Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
AIV S+ G YYV ILS +D++ L+P ++ +H ++V +L E D + ++ ++
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+R IF TS+M L+++V+LE++V D+ SGADI +IC E+G+LA+RE R V DF
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399
Query: 426 KKAKEKVMFKKKE 438
+KA + V+ K ++
Sbjct: 400 EKAYKTVIKKDEQ 412
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4
PE=1 SV=1
Length = 418
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 278/373 (74%), Gaps = 4/373 (1%)
Query: 67 RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
R KL++ ++L ++EE++ + Q+ LK + A+E+ ++ + P+ +G E +D+N
Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
AIV S+ G YYV ILS +D++ L+P ++ +H ++V +L E D + ++ ++
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+R IF TS+M L+++V+LE++V D+ SGADI +IC E+G+LA+RE R V DF
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399
Query: 426 KKAKEKVMFKKKE 438
+KA + V+ K ++
Sbjct: 400 EKAYKTVIKKDEQ 412
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1
SV=2
Length = 418
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/373 (50%), Positives = 278/373 (74%), Gaps = 4/373 (1%)
Query: 67 RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
R KL++ ++L ++EE++ + Q+ LK + A+E+ ++ + P+ +G E +D+N
Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
AIV S+ G YYV ILS +D++ L+P ++ +H ++V +L E D + ++ ++
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+R IF TS+M L+++V+LE++V D+ SGADI +IC E+G+LA+RE R V DF
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDF 399
Query: 426 KKAKEKVMFKKKE 438
+KA + V+ K ++
Sbjct: 400 EKAYKTVIKKDEQ 412
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/362 (51%), Positives = 271/362 (74%), Gaps = 4/362 (1%)
Query: 67 RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
RL LER ++ ++EE+V + Q+ LK + +A+E+ V ++ P+ +G E++D+N
Sbjct: 33 RLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQN 89
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
+ IV S+ G YYV ILS ++++ L+P ++ +H ++V +L E D +S++ +
Sbjct: 90 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 149
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P SY DIGG D Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 150 PDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 209
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
AN T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDE+DA+ T R+DA +
Sbjct: 210 ANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQT 269
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
G +RE+QR ++ELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 270 GADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 329
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+R +FQ+ TS+M L+D+V+LE++V D+ S A+I AIC EAG+ A+R+ R + DF
Sbjct: 330 QKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 389
Query: 426 KK 427
+K
Sbjct: 390 EK 391
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/362 (53%), Positives = 272/362 (75%), Gaps = 3/362 (0%)
Query: 81 EEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVG 140
E++F+ + ER++ E + RS+V+ LR P+ VG + +++++ +V SS GP++ V
Sbjct: 33 EKKFIES-ERIR-YEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVN 90
Query: 141 ILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQI 200
++++++L+PG + ++ + L++V +L DPMV +VE+ P SY DIGGLD QI
Sbjct: 91 TSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQI 150
Query: 201 QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260
+EI+EAVELPL PEL+ ++GI+PPKGV+LYG PGTGKTLLAKAVAN T ATF+RVVGSE
Sbjct: 151 EEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSE 210
Query: 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320
+QKY+G+G +LVRE+F++A + +PSI+FIDE+DA+ +R ++ + G+RE+QRTM++LL
Sbjct: 211 FVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLA 270
Query: 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380
+LDGFD RGDVKVI ATNRI+ LDPA+LRPGR DR IE PLP + R +IF+IHT +M L
Sbjct: 271 ELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKL 330
Query: 381 ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGV 440
A+DV+ +E + SGADIKAICTEAG+ A+RE R KVT DF KA EKV+ KK +
Sbjct: 331 AEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVL-KKTTPI 389
Query: 441 PE 442
P+
Sbjct: 390 PD 391
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/362 (50%), Positives = 273/362 (75%), Gaps = 4/362 (1%)
Query: 67 RLLKLERIKDYLLMEEEFVTNQ-ERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
RL L+R +++ ++EE+V ++ + LK ++ +++E+ V ++ P+ +G E+ID+N
Sbjct: 39 RLKTLDRQIEFIDIQEEYVKDELKNLKREQLRSQEE---VKRIQSVPLVIGQFMEMIDQN 95
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
+ IV S+ G YYV ILS ++++ L+P ++ +H ++V +L E D +S++ +
Sbjct: 96 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 155
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P +Y DIGG D Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 156 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 215
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
AN T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDE+DA+ T R+DA +
Sbjct: 216 ANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQT 275
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
G +RE+QR ++ELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 276 GADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 335
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+R +FQ+ T++M L+D+V+LE++V D+ S A+I AIC EAG+ A+R+ R + DF
Sbjct: 336 QKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDF 395
Query: 426 KK 427
+K
Sbjct: 396 EK 397
>sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B OS=Caenorhabditis
elegans GN=rpt-3 PE=3 SV=1
Length = 414
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/375 (52%), Positives = 275/375 (73%), Gaps = 9/375 (2%)
Query: 61 LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
L+ + +L L+ ++DY+ +E + +E L QEE V ++ P+ +G E
Sbjct: 40 LTTLERQLAHLQVMEDYIKLETRNL-EKELLHAQEE--------VKRIQSVPLVIGQFLE 90
Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
+D+NHAIV S+ G YYV +LS +D++ L+PGC++ +H ++V +L E D + ++
Sbjct: 91 AVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQML 150
Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
+ ++ P SY DIGGLD Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+
Sbjct: 151 RPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTM 210
Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
LAKAVA +T+A+F+RVVGSE +QKYLG+GP++VR++FR+A + SPSI+FIDEIDA+ TKR
Sbjct: 211 LAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKR 270
Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
+DA +G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFP
Sbjct: 271 FDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFP 330
Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420
LPD + +R +F SRM L+DDV+LE++V D+ SGADI +IC EAG+ A+RE R V
Sbjct: 331 LPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVV 390
Query: 421 THTDFKKAKEKVMFK 435
D +KA + V+ K
Sbjct: 391 LTKDLEKAYKNVVKK 405
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/391 (47%), Positives = 279/391 (71%), Gaps = 15/391 (3%)
Query: 49 PEAAARLPTVTPLSKCK-----------LRLLKLERIKDYLLMEEEFVTNQ-ERLKPQEE 96
P+ A +LP P + RL L+R +++ ++EE+V ++ + L+ +
Sbjct: 9 PKPAEKLPATRPETSITDVPSDGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHL 68
Query: 97 KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAI 156
+A+E+ V ++ P+ +G E+ID+N+AIV S+ G YYV ILS ++++ L+P ++
Sbjct: 69 RAQEE---VKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASV 125
Query: 157 LMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPEL 216
+ ++V +L E D +S++ + P +Y DIGG D Q QEI+EAVELPLTH EL
Sbjct: 126 GLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHEL 185
Query: 217 YEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVREL 276
Y+ IGI PP+GV+LYG PGTGKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++VR++
Sbjct: 186 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDV 245
Query: 277 FRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336
FR+A + +P+I+FIDE+DA+ T R+DA +G +RE+QR ++ELLNQ+DGFD +VKVI+A
Sbjct: 246 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA 305
Query: 337 TNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEF 396
TNR ++LDPALLRPGR+DRKIEFPLPD + +R +FQ+ T++M L D+V+LE++V D+
Sbjct: 306 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKI 365
Query: 397 SGADIKAICTEAGLLALRERRMKVTHTDFKK 427
S A+I AIC EAG+ A+R+ R + DF+K
Sbjct: 366 SAAEITAICQEAGMHAVRKNRYVILPKDFEK 396
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/362 (51%), Positives = 267/362 (73%), Gaps = 4/362 (1%)
Query: 67 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
++ LE D+ ++EE++ + + LK + A+E+ V +R P+ +G L E++D N
Sbjct: 28 KMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEE---VKRIRSVPLLIGQLLEMVDSN 84
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
IV S+ G V ILS +D++ L+P ++ + ++V L E D + ++ ++
Sbjct: 85 TGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEK 144
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P ESY+DIGG D Q QE++EAVELPLTH LY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 145 PSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 204
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
A+ TSA F+RVVGSE +QKYLG+GP+LVR++FR+A + SP+I+FIDEIDA+ TKR+DA +
Sbjct: 205 AHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQT 264
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
G +RE+QR ++ELLNQ+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 265 GADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRR 324
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
+R IFQ+ TS+M L+D+V+LE++V D+ SGA+I++IC EAG+ A+R+ R + DF
Sbjct: 325 QKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDF 384
Query: 426 KK 427
+K
Sbjct: 385 EK 386
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/381 (49%), Positives = 262/381 (68%), Gaps = 13/381 (3%)
Query: 65 KLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDE 124
KLRLL++ + Y+ E E + +ER R ++D ++ P+ +G E ID
Sbjct: 19 KLRLLEIR--EGYVRKEIETLKREER---------HSREELDRVKSVPLIMGQFLEPIDS 67
Query: 125 NHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEK 184
+ AIV S+ G + V ILS VD++ L+P + +H ++VG+L EVD + VM +
Sbjct: 68 STAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESE 127
Query: 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKA 244
P +Y D+GGLD Q QEIKE VELPL +LY IGI PP+GV+LYG PGTGKT+L KA
Sbjct: 128 KPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKA 187
Query: 245 VANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304
VAN T ATF+RV GSE +QKYLG+GP++VR++FR+A + +PSIVFIDE+D++ TKR+DA
Sbjct: 188 VANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDAS 247
Query: 305 SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDI 364
+ +RE+QR ++ELLNQ+DGFD +VKVI+ATNR +++DPALLRPGR+DRKIEFPLPD
Sbjct: 248 TSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDR 307
Query: 365 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 424
+ +R +F TS+M+L D V++E V ++ S ADI +IC EAG+LA+R R VT D
Sbjct: 308 RQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRD 367
Query: 425 FKKAKEKVMFKKKEGVPEGLY 445
F++A KV+ ++ G Y
Sbjct: 368 FEEAYSKVV--ERSGTQPAFY 386
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/332 (53%), Positives = 246/332 (74%)
Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
R ++D +R P+ VG + + + E +V SS GP + V + FV+ D L PG + ++ +
Sbjct: 81 RRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQ 140
Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
L+VV +L + D M+V++ P Y DIGGL+ Q+QEI+E VELPL HPEL+E +G
Sbjct: 141 TLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG 200
Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
I+PPKG++LYG PGTGKTLLAKAVA T+ATF+RVVGSEL++K++G+G LV+++F++A
Sbjct: 201 IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK 260
Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
+ +PSI+FIDEIDA+ KR DA +GG+RE+QRT+++LL ++DGFD+RGDVK+I ATNR +
Sbjct: 261 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 320
Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
LDPA+LRPGR DR IE P PD K R I +IHT +M LA+DVNLEE + GA++
Sbjct: 321 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAEL 380
Query: 402 KAICTEAGLLALRERRMKVTHTDFKKAKEKVM 433
KAICTEAG+ A+RE R VT DF+KA EK+M
Sbjct: 381 KAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 412
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/381 (49%), Positives = 268/381 (70%), Gaps = 13/381 (3%)
Query: 62 SKCKLRLL----KLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGN 117
SK K L+ KLE KD LL+E E + RL + + + R +++ R P+ +
Sbjct: 27 SKTKRNLMWKIRKLE--KDKLLIENE----RTRL---DREVKSLRGEIERFRTPPLVIAT 77
Query: 118 LEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMV 177
+ E++D++ V S+ GP + + F+D+ QLEPG + ++ + S+V +L E DP+V
Sbjct: 78 VTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVV 137
Query: 178 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTG 237
+ M+VE+ P SY IGGL+ Q++E+KE VELPL PEL+E IGI+PPKGV+LYG PGTG
Sbjct: 138 TGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTG 197
Query: 238 KTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVG 297
KTLLAKAVA+ T+ATF+++V SE ++KY+G+G +LVR +F +A + SPSI+FIDEIDAV
Sbjct: 198 KTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVA 257
Query: 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKI 357
KR + + G+RE+QRT+++LL +LDGF+SRG+V ++ ATNR + LDPALLRPGR DR I
Sbjct: 258 AKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFI 317
Query: 358 EFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 417
E PLP+ RR I +IHTS M LA++V++E D SGAD+KAICTEAG+ A+R+ R
Sbjct: 318 EVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDER 377
Query: 418 MKVTHTDFKKAKEKVMFKKKE 438
+VT DF A +K+M +KE
Sbjct: 378 DEVTMADFMDAVDKIMGVEKE 398
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/351 (52%), Positives = 255/351 (72%)
Query: 88 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDK 147
+E L+ +E E+ RS + ++ P+ VG +EE++D+ IV SS GP++ + VD+
Sbjct: 76 REELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDR 135
Query: 148 DQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAV 207
++LEPG + ++ + ++VV +L E D V M+V+++P SY DIGGLD QI+EI+E V
Sbjct: 136 NELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVV 195
Query: 208 ELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267
E PL PEL+E +G++PPKGV+LYG PGTGKTLLAKAVAN ATF+R+ EL+QK++G
Sbjct: 196 EKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIG 255
Query: 268 DGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327
+G +LVRELF +A + +PSI+FIDEIDA+G +R + G+RE+QRT+ +LL ++DGFD
Sbjct: 256 EGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDP 315
Query: 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLE 387
D+KVI ATNR + LDPALLRPGR DR I+ PLPD + R IF+IHT M LA+DV+L+
Sbjct: 316 LDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQ 375
Query: 388 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 438
+ + SGADIKAICTEAG++A+RE R VT DF KA ++VM KK+E
Sbjct: 376 KLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDFLKAVDRVMGKKEE 426
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 262/355 (73%), Gaps = 5/355 (1%)
Query: 68 LLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENH 126
L +L+R +Y+ ++EE++ +++R LK + +A+E+ ++ + P+ +G E ID+N
Sbjct: 45 LKRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSV---PLVIGQFMEAIDQNT 101
Query: 127 AIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAP 186
IV SS G Y V ILS +D+++L+P ++ +H ++V +L E D ++++ + P
Sbjct: 102 GIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKP 161
Query: 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVA 246
+YAD+GGLD Q QEI+EAVELPLT +LY+ IGI PP+GV+LYG PGTGKT+L KAVA
Sbjct: 162 DVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVA 221
Query: 247 NSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG 306
NST+A+F+RV GSE +QKYLG+GP++VR++FR+A + SP+I+FIDEIDA+ TKR+DA +G
Sbjct: 222 NSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTG 281
Query: 307 GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDIK 365
+RE+QR +LELLNQ+DGF+ +VKVI+ATNR ++LDPALLRPGR+DRKIEFP L D +
Sbjct: 282 ADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRR 341
Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 420
RR IF S+M+L+ +V+L+ ++ + SGA I AI EAGL A+R+ R +
Sbjct: 342 ERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKNRYNI 396
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 360 bits (925), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 182/369 (49%), Positives = 265/369 (71%), Gaps = 5/369 (1%)
Query: 67 RLLKLERIKDYLLMEEEFVT-NQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
R LER + L ++E F+ + + LK + +A+E+ V ++ P+ +G E ID+N
Sbjct: 12 RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEE---VKRIQSVPLVIGQFLEAIDQN 68
Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
AIV S+ G Y V ILS +D++ L+P ++ + ++V +L E D +S+++ ++
Sbjct: 69 TAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDER 128
Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
P SYAD+GGLD Q QE++EAVELPLT +LY IGI PP+GV+LYG PGTGKT+L KAV
Sbjct: 129 PDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAV 188
Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
ANST+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 189 ANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQT 248
Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDI 364
G +RE+QR ++ELL Q+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFP D
Sbjct: 249 GADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDR 308
Query: 365 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 424
+ RR +FQ T++M L+ +V+L+ F+M D SGA I AI +AGLLA+R+ R + +D
Sbjct: 309 RQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSD 368
Query: 425 FKKAKEKVM 433
++A + +
Sbjct: 369 IEEAYARAV 377
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 360 bits (923), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/369 (49%), Positives = 263/369 (71%), Gaps = 5/369 (1%)
Query: 62 SKCKLRLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
S +L KLE+ + L ++E+++ +++R LK + ++A+E+ V ++ P+ +G E
Sbjct: 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEE---VKRIQSVPLVIGQFLE 101
Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
ID+N IVSS+ G Y V ILS +D++ L+P ++ +H ++V +L + D +SVM
Sbjct: 102 PIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVM 161
Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
+ P +YAD+GGLD Q QEI+EAVELPL +LYE IGI PP+GV+LYG PGTGKT+
Sbjct: 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTM 221
Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
L KAVANST A F+RV GSE + KYLG+GP++VR++FR+A + +PSI+FIDE+D++ TKR
Sbjct: 222 LVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR 281
Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
+DA +G +RE+QR ++ELL Q+DGFD +VKVI+ATNR ++LDPALLRPGR+DRKIEFP
Sbjct: 282 FDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 341
Query: 361 -LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMK 419
L D + RR IF S+M+LA + +L+ ++ D SGA I AI EAGL A+R+ R
Sbjct: 342 SLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYV 401
Query: 420 VTHTDFKKA 428
+ +D ++A
Sbjct: 402 ILQSDLEEA 410
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 358 bits (918), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 172/331 (51%), Positives = 241/331 (72%)
Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
+S+++ LR P+ +G + ++ID + IV SS GP + V +D D L+PG ++ +
Sbjct: 64 KSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQ 123
Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
L++V +L D + M++ ++P E+Y +IGGL+ QI+EI+EAVELPLT P+L+E +G
Sbjct: 124 SLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVG 183
Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
I PPKGV+LYG PGTGKTLLA+AVA+ T+A FLRVVGSEL+QKY+G+G +LVRELF +A
Sbjct: 184 ISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAK 243
Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
+PSI+FIDEIDA+G R D+ + G+RE+QRT+++LL ++DGFD+RGDVK++ ATNRI+
Sbjct: 244 QRAPSIIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRID 303
Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
LD ALLRPGR DR IE PLPD + R I +IHT M + +DVNL E + +GAD+
Sbjct: 304 ILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADL 363
Query: 402 KAICTEAGLLALRERRMKVTHTDFKKAKEKV 432
+AIC EAG+ A+R R V DF KA +K+
Sbjct: 364 RAICMEAGMFAIRMERDAVNSEDFMKAIDKL 394
>sp|Q5JHS5|PAN_PYRKO Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pan PE=3
SV=1
Length = 397
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 182/365 (49%), Positives = 255/365 (69%), Gaps = 4/365 (1%)
Query: 73 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
RI+ L ++ERL E + R ++ LR P GN+ E++D+ AIV +
Sbjct: 23 RIRQLELQVRTLEADKERL---ERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNY 79
Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
GP + V I ++++D+L+PG + + + +++V LL E DP V +V + P +Y D
Sbjct: 80 NGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYND 139
Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
IGGL+ Q+QE++EA+ELPL HPEL+E +GI+PPKGV+LYG PG GKTL+AKAVAN +AT
Sbjct: 140 IGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNAT 199
Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
F+RVVGSEL++K++G+G +LV ELF +A + +P+I+FIDEIDA+G KR D +GGERE+
Sbjct: 200 FIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 259
Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R I +
Sbjct: 260 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILK 319
Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 432
+HT +M L V+L + SGAD+KAI TEAG+ A+R+RR VT DF KA +KV
Sbjct: 320 VHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKAVDKV 378
Query: 433 MFKKK 437
+ +K
Sbjct: 379 IGSEK 383
>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
(strain NA1) GN=pan PE=3 SV=1
Length = 398
Score = 354 bits (909), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 182/361 (50%), Positives = 251/361 (69%), Gaps = 4/361 (1%)
Query: 73 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
RI+ L ++ERL E + R ++ LR P G L EL+DE+ AIV +
Sbjct: 24 RIRQLELQVRTLEADKERL---ERELSRLRMEMSRLRQPPAFAGTLIELLDEDRAIVQNY 80
Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
GP + V I +++++ L+PG + + + +++V LL E DP V +V + P SY D
Sbjct: 81 NGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYND 140
Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
IGGLD Q+QE++EA+ELPL HPEL+E +GI+PPKGV+LYG PG GKTL+AKA+A+ +AT
Sbjct: 141 IGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALAHEVNAT 200
Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
F+RVVGSEL++K++G+G +LV ELF +A + +P+I+FIDEIDA+G KR D +GGERE+
Sbjct: 201 FIRVVGSELVRKFIGEGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDETTGGEREVN 260
Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
RT+++LL ++DGFD G+VK+I ATNR + LDPALLRPGR DR IE PLP+ K+R I +
Sbjct: 261 RTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILK 320
Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 432
IHT RM L V+L + SGAD+KAI EAG+ A+R+RR VT DF KA EKV
Sbjct: 321 IHTKRMNL-KGVDLRIIAEMTEGASGADLKAITMEAGMFAIRDRREYVTQEDFLKAIEKV 379
Query: 433 M 433
+
Sbjct: 380 L 380
>sp|C5A6P8|PAN_THEGJ Proteasome-activating nucleotidase OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1
Length = 397
Score = 354 bits (909), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 181/365 (49%), Positives = 256/365 (70%), Gaps = 4/365 (1%)
Query: 73 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
RI+ L ++ERL E + R+++ LR P G + E++D++ AIV +
Sbjct: 23 RIRQLELQVRTLEADKERL---ERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 79
Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
GP + V I ++++D+L+PG + + + +++V LL E DP V +V + P +Y D
Sbjct: 80 NGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQD 139
Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
IGGL+ Q+ E++EAVELPL HPEL+E +GI+PPKGV+LYG PG GKTL+AKAVAN +AT
Sbjct: 140 IGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNAT 199
Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
F+RVVGSEL++K++G+G +LV ELF +A + +P+I+FIDEIDA+G KR D +GGERE+
Sbjct: 200 FIRVVGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 259
Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R I +
Sbjct: 260 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILK 319
Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 432
+HT +M L +V+L + SGAD+KAI TEAG+ A+R+RR VT DF KA +KV
Sbjct: 320 VHTRKMNLR-NVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKAVDKV 378
Query: 433 MFKKK 437
+ +K
Sbjct: 379 LGAEK 383
>sp|O57940|PAN_PYRHO Proteasome-activating nucleotidase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pan PE=3 SV=1
Length = 399
Score = 354 bits (908), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 182/361 (50%), Positives = 250/361 (69%), Gaps = 4/361 (1%)
Query: 73 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
RI+ L ++ERL E + RS++ LR P G + E++DE+ AIV +
Sbjct: 25 RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNY 81
Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
GP + V I ++D+ +L PG + + + ++VV +L DP V +V + P +Y D
Sbjct: 82 NGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYND 141
Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
IGGL Q+QE++EA+ELPL HPEL+E++GI PPKGV+LYG PG GKTL+AKA+A+ +AT
Sbjct: 142 IGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNAT 201
Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
F+RVVGSEL++KY+G+G +LV ELF +A + +P+I+FIDEIDA+G KR D +GGERE+
Sbjct: 202 FIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 261
Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R I +
Sbjct: 262 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILK 321
Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 432
+HT RM L V+L + SGAD+KAI TEAG+ A+RERR VT DF KA +KV
Sbjct: 322 VHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKV 380
Query: 433 M 433
+
Sbjct: 381 L 381
>sp|Q9V287|PAN_PYRAB Proteasome-activating nucleotidase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=pan PE=3 SV=2
Length = 396
Score = 354 bits (908), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 180/361 (49%), Positives = 252/361 (69%), Gaps = 4/361 (1%)
Query: 73 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
RI+ L ++ERL E + RS++ LR P G + E++D++ AIV +
Sbjct: 22 RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 78
Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
GP + V I ++++D+L PG + + + ++++ LL DP V +V + P +Y D
Sbjct: 79 NGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYND 138
Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
IGGL Q+QE++EA+ELPL HPEL+E++GI PPKGV+LYG PG GKTL+AKA+A+ +AT
Sbjct: 139 IGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNAT 198
Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
F+RVVGSEL++KY+G+G +LV ELF +A + +P+I+FIDEIDA+G KR D +GGERE+
Sbjct: 199 FIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 258
Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R I +
Sbjct: 259 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILK 318
Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 432
+HT RM L +V+L + SGAD+KAI TEAG+ A+RERR VT DF KA +KV
Sbjct: 319 VHTRRMKLK-NVDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKV 377
Query: 433 M 433
+
Sbjct: 378 L 378
>sp|Q8U4H3|PAN_PYRFU Proteasome-activating nucleotidase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pan PE=3 SV=1
Length = 396
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 181/366 (49%), Positives = 254/366 (69%), Gaps = 4/366 (1%)
Query: 73 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
RI+ L ++ERL E + RS++ LR P G++ E++D++ AIV +
Sbjct: 22 RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNY 78
Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
GP + V I ++DK +L PG + + + ++++ +L DP V +V + P +Y D
Sbjct: 79 NGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYND 138
Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
IGGL Q+QE++EA+ELPL HPEL+E++GI PPKGV+LYG PG GKTL+AKA+A+ +AT
Sbjct: 139 IGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNAT 198
Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
F+RVVGSEL++KY+G+G +LV ELF +A + +P+I+FIDEIDA+G KR D +GGERE+
Sbjct: 199 FIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREVN 258
Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R I +
Sbjct: 259 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILK 318
Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 432
+HT RM L V+L + SGAD+KAI TEAG+ A+RERR VT DF KA +KV
Sbjct: 319 VHTRRMKLR-GVDLRLIAELTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAIDKV 377
Query: 433 MFKKKE 438
+ +K+
Sbjct: 378 LGNEKK 383
>sp|Q0W257|PAN_UNCMA Proteasome-activating nucleotidase OS=Uncultured methanogenic
archaeon RC-I GN=pan PE=3 SV=1
Length = 417
Score = 351 bits (901), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 167/331 (50%), Positives = 238/331 (71%)
Query: 103 SKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKV 162
S++D L+ P+ VG + +++ I+ SS GP++ V F++ ++ PG + ++ +
Sbjct: 71 SELDRLKTPPLIVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQS 130
Query: 163 LSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI 222
L+V+ +L DP V M+V +P Y IGGL+AQI E+KE VELPL PEL++ +GI
Sbjct: 131 LAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGI 190
Query: 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 282
+PPKGV+LYG PGTGKTLLAKAVAN T ATF+R++GSEL+QKY+G+G ++VRELF +A +
Sbjct: 191 EPPKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKE 250
Query: 283 LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342
SPSI+FIDEID++G KR D+ + G+RE+QRT+++LL ++DGFD RG+V+++ ATNR +
Sbjct: 251 KSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDI 310
Query: 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK 402
LDPALLRPGR DR I+ P+P + R +I +IH +M LADDV+L + + DE SGAD+
Sbjct: 311 LDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLS 370
Query: 403 AICTEAGLLALRERRMKVTHTDFKKAKEKVM 433
AI EAG+ A+R R V +DF A KVM
Sbjct: 371 AIVMEAGMFAIRNNRDVVDSSDFNAAVAKVM 401
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/343 (51%), Positives = 247/343 (72%), Gaps = 2/343 (0%)
Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
+ ++D LR P+ +G + + ++E A+V SS GP + V + FV+ D + PG + ++ +
Sbjct: 59 KRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQ 118
Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
L+VV +L E D M++E+ P + DIGGL+ QI++IKE VELPL +PEL+E +G
Sbjct: 119 TLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVG 178
Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
I PPKGV+LYG PGTGKTLLAKAVA T+A+F+RVVGSEL++K++G+G KLVR++F++A
Sbjct: 179 IVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAK 238
Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
+ SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR +
Sbjct: 239 EKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPD 298
Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
LDPA+LRPGR DR IE PD R IF+IHT +M + V+L E + GADI
Sbjct: 299 ILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNIK-SVDLREIAKMAENMVGADI 357
Query: 402 KAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGL 444
KA+CTEAG+ A+RE R VT DFK+A KV KKE EG+
Sbjct: 358 KAVCTEAGMFAIREGREYVTTKDFKEALLKVT-GKKEKSEEGI 399
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/337 (50%), Positives = 246/337 (72%), Gaps = 1/337 (0%)
Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
+ ++D LR P+ +G + + ++E A+V SS GP + V + FVD + + PG + ++ +
Sbjct: 59 KRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQ 118
Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
L++V +L E D M++E+ P S+ DIGGL+ QI++IKE VELPL +PEL+E +G
Sbjct: 119 TLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVG 178
Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
I PPKGV+LYG PGTGKTLLAKAVA T+A+F+RVVGSEL++K++G+G KLVR++F++A
Sbjct: 179 IVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAK 238
Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
+ SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR +
Sbjct: 239 EKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPD 298
Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
LDPA+LRPGR DR IE +PD R I +IHT +M L +V+L E + GAD+
Sbjct: 299 ILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLK-NVDLREVAKLAENMVGADL 357
Query: 402 KAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 438
KA+CTEAG+ A+RE R + DFK+A K+ KK++
Sbjct: 358 KAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKEK 394
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 348 bits (892), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 171/337 (50%), Positives = 245/337 (72%), Gaps = 1/337 (0%)
Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
+ ++D LR P+ +G + + ++E A+V SS GP + V + FVD D + PG + ++ +
Sbjct: 59 KRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQ 118
Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
L++V +L E D M++E+ P S+ DIGGL+ QI++IKE VELPL +PEL+E +G
Sbjct: 119 TLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVG 178
Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
I PPKGV+LYG PGTGKTLLAKAVA T+A+F+RVVGSEL++K++G+G KLVR++F++A
Sbjct: 179 IVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAK 238
Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
+ SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR +
Sbjct: 239 EKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPD 298
Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
LDPA+LRPGR DR IE +PD R I +IHT +M L V+L E + GAD+
Sbjct: 299 ILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNLK-GVDLREVAKIAENMVGADL 357
Query: 402 KAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 438
KA+CTEAG+ A+RE R + DF++A K+ KK++
Sbjct: 358 KAVCTEAGMFAIREEREFIKMDDFREAITKITGKKEK 394
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 348 bits (892), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 172/331 (51%), Positives = 235/331 (70%)
Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
+S+ + LR P+ +G + +++D N IV SS GP + V V+ D ++PG ++ +
Sbjct: 89 KSESEQLRSPPLIIGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQ 148
Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
L++V LL D V M++ +P E Y DIGGL QI E++EAVELPL PEL+ IG
Sbjct: 149 SLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIG 208
Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
I+PPKGV+LYG PGTGKTLLAKAVA+ T+A F+RVVGSEL+QKY+G+G +LVRELF +A
Sbjct: 209 IEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLAK 268
Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
+P+I+FIDEIDAVG R +A++ G+RE+QRT+++LL +DGF++RGDVK+I ATNRI+
Sbjct: 269 KKAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRID 328
Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
LD ALLRPGR DR IE PLPD + R I ++HT +T+ + VNL E + +GAD+
Sbjct: 329 ILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADL 388
Query: 402 KAICTEAGLLALRERRMKVTHTDFKKAKEKV 432
+AIC EAG+ A+R R +T DF A EKV
Sbjct: 389 RAICMEAGMYAIRNERPAITREDFLSAIEKV 419
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 347 bits (890), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 174/352 (49%), Positives = 254/352 (72%), Gaps = 2/352 (0%)
Query: 87 NQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVD 146
N+E ++ ++E E + ++D LR P+ +G + + ++E A+V SS GP + V + FVD
Sbjct: 45 NRENVQIKKEN-EILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVD 103
Query: 147 KDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEA 206
+ + PG + ++ + L++V +L E D M++E+ P S+ DIGGL+ QI++IKE
Sbjct: 104 PEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEV 163
Query: 207 VELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266
VELPL +PEL+E +GI PPKGV+LYG PGTGKTLLAKAVA T+A+F+RVVGSEL++K++
Sbjct: 164 VELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFI 223
Query: 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD 326
G+G KLVR++F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFD
Sbjct: 224 GEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFD 283
Query: 327 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNL 386
SRGDVK+I ATNR + LDPA+LRPGR DR IE +PD R I +IHT +M L V+L
Sbjct: 284 SRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLK-GVDL 342
Query: 387 EEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 438
E + GAD+KA+CTEAG+ A+RE R + DF++A K+ KK++
Sbjct: 343 REVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAISKITGKKEK 394
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 347 bits (890), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 171/337 (50%), Positives = 245/337 (72%), Gaps = 1/337 (0%)
Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
+ ++D LR P+ +G + + ++E A+V SS GP + V + FVD + + PG + ++ +
Sbjct: 59 KRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQ 118
Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
L++V +L E D M++E+ P S+ DIGGL+ QI++IKE VELPL +PEL+E +G
Sbjct: 119 TLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVG 178
Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
I PPKGV+LYG PGTGKTLLAKAVA T+A+F+RVVGSEL++K++G+G KLVR++F++A
Sbjct: 179 IVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAK 238
Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
+ SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR +
Sbjct: 239 EKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPD 298
Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
LDPA+LRPGR DR IE +PD R I +IHT +M L V+L E + GAD+
Sbjct: 299 ILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNLK-GVDLREVAKLAENMVGADL 357
Query: 402 KAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 438
KA+CTEAG+ A+RE R + DFK+A K+ KK++
Sbjct: 358 KAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKEK 394
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 345 bits (884), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 177/377 (46%), Positives = 257/377 (68%), Gaps = 4/377 (1%)
Query: 66 LRLLKLERIKDYLLMEEEFVTNQERLKPQEE----KAEEDRSKVDDLRGSPMSVGNLEEL 121
R +++I++ L+ E N RL+ Q K R ++ L+ VG + +
Sbjct: 19 FRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKP 78
Query: 122 IDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMK 181
+D+ +V ++ V + +D + + P C + + N+ ++ +L ++VDP+VS+M
Sbjct: 79 MDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMM 138
Query: 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 241
VEK P +Y +GGLD QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLL
Sbjct: 139 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 198
Query: 242 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301
A+AVA+ T TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID++G+ R
Sbjct: 199 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI 258
Query: 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361
++ SGG+ E+QRTMLELLNQLDGF++ ++KVI+ATNRI+ LDPALLRPGRIDRKIEFP
Sbjct: 259 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 318
Query: 362 PDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 421
P+ + R I +IH+ +M L +NL + SGA++K +CTEAG+ ALRERR+ VT
Sbjct: 319 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 378
Query: 422 HTDFKKAKEKVMFKKKE 438
DF+ A KVM K E
Sbjct: 379 QEDFEMAVAKVMQKDSE 395
>sp|O88685|PRS6A_MOUSE 26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=1
SV=2
Length = 442
Score = 344 bits (882), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 171/382 (44%), Positives = 251/382 (65%), Gaps = 20/382 (5%)
Query: 79 LMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN------------- 125
+M+ E + L+ ++K +E+ K+ + P V N+ EL+D +
Sbjct: 57 IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 116
Query: 126 -------HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVS 178
A++ +S Y++ ++ VD ++L+PG + ++ ++ L E D V
Sbjct: 117 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 176
Query: 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 238
M+V++ P E Y+DIGGLD QIQE+ EA+ LP+ H E +E++GI+PPKGV++YG PGTGK
Sbjct: 177 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 236
Query: 239 TLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298
TLLA+A A T ATFL++ G +L+Q ++GDG KLVR+ F +A + +PSI+FIDE+DA+GT
Sbjct: 237 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 296
Query: 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIE 358
KR+D+ G+RE+QRTMLELLNQLDGF VKVI ATNR++ LDPALLR GR+DRKIE
Sbjct: 297 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 356
Query: 359 FPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRM 418
FP+P+ + R RI QIH+ +M ++ DVN EE D+F+GA KA+C EAG++ALR
Sbjct: 357 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGAT 416
Query: 419 KVTHTDFKKAKEKVMFKKKEGV 440
++TH D+ + +V KKK +
Sbjct: 417 ELTHEDYMEGILEVQAKKKANL 438
>sp|P17980|PRS6A_HUMAN 26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1
SV=3
Length = 439
Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/382 (44%), Positives = 251/382 (65%), Gaps = 20/382 (5%)
Query: 79 LMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN------------- 125
+M+ E + L+ ++K +E+ K+ + P V N+ EL+D +
Sbjct: 54 IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 113
Query: 126 -------HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVS 178
A++ +S Y++ ++ VD ++L+PG + ++ ++ L E D V
Sbjct: 114 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 173
Query: 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 238
M+V++ P E Y+DIGGLD QIQE+ EA+ LP+ H E +E++GI+PPKGV++YG PGTGK
Sbjct: 174 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233
Query: 239 TLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298
TLLA+A A T ATFL++ G +L+Q ++GDG KLVR+ F +A + +PSI+FIDE+DA+GT
Sbjct: 234 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 293
Query: 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIE 358
KR+D+ G+RE+QRTMLELLNQLDGF VKVI ATNR++ LDPALLR GR+DRKIE
Sbjct: 294 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 353
Query: 359 FPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRM 418
FP+P+ + R RI QIH+ +M ++ DVN EE D+F+GA KA+C EAG++ALR
Sbjct: 354 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGAT 413
Query: 419 KVTHTDFKKAKEKVMFKKKEGV 440
++TH D+ + +V KKK +
Sbjct: 414 ELTHEDYMEGILEVQAKKKANL 435
>sp|Q63569|PRS6A_RAT 26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3
PE=2 SV=1
Length = 439
Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/382 (44%), Positives = 251/382 (65%), Gaps = 20/382 (5%)
Query: 79 LMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN------------- 125
+M+ E + L+ ++K +E+ K+ + P V N+ EL+D +
Sbjct: 54 IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 113
Query: 126 -------HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVS 178
A++ +S Y++ ++ VD ++L+PG + ++ ++ L E D V
Sbjct: 114 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 173
Query: 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 238
M+V++ P E Y+DIGGLD QIQE+ EA+ LP+ H E +E++GI+PPKGV++YG PGTGK
Sbjct: 174 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233
Query: 239 TLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298
TLLA+A A T ATFL++ G +L+Q ++GDG KLVR+ F +A + +PSI+FIDE+DA+GT
Sbjct: 234 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 293
Query: 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIE 358
KR+D+ G+RE+QRTMLELLNQLDGF VKVI ATNR++ LDPALLR GR+DRKIE
Sbjct: 294 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 353
Query: 359 FPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRM 418
FP+P+ + R RI QIH+ +M ++ DVN EE D+F+GA KA+C EAG++ALR
Sbjct: 354 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGAT 413
Query: 419 KVTHTDFKKAKEKVMFKKKEGV 440
++TH D+ + +V KKK +
Sbjct: 414 ELTHEDYMEGILEVQAKKKANL 435
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,188,855
Number of Sequences: 539616
Number of extensions: 7774338
Number of successful extensions: 28373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 1675
Number of HSP's that attempted gapping in prelim test: 25899
Number of HSP's gapped (non-prelim): 2965
length of query: 446
length of database: 191,569,459
effective HSP length: 121
effective length of query: 325
effective length of database: 126,275,923
effective search space: 41039674975
effective search space used: 41039674975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)