Query 013287
Match_columns 446
No_of_seqs 227 out of 1533
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 3.5E-78 7.6E-83 602.3 38.0 361 49-446 50-414 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 7.8E-36 1.7E-40 301.2 29.8 274 63-444 32-322 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 6.2E-34 1.4E-38 286.2 31.4 280 59-444 22-318 (318)
4 PRK09546 zntB zinc transporter 100.0 2.4E-32 5.3E-37 275.9 33.1 273 62-444 35-324 (324)
5 PRK11085 magnesium/nickel/coba 100.0 4.1E-29 8.9E-34 250.6 28.7 271 63-444 25-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 100.0 7.6E-28 1.7E-32 237.2 25.6 273 62-440 2-292 (292)
7 PRK09546 zntB zinc transporter 96.6 0.18 4E-06 51.1 18.8 38 362-399 248-285 (324)
8 PRK11085 magnesium/nickel/coba 95.2 4.3 9.3E-05 41.4 22.1 99 343-444 214-313 (316)
9 PF01544 CorA: CorA-like Mg2+ 95.2 0.49 1.1E-05 46.4 13.9 77 339-415 195-273 (292)
10 TIGR00383 corA magnesium Mg(2+ 94.9 1.9 4.2E-05 43.3 17.6 85 344-429 224-310 (318)
11 COG0598 CorA Mg2+ and Co2+ tra 94.2 3.8 8.3E-05 41.6 17.9 94 345-443 222-318 (322)
12 PF10267 Tmemb_cc2: Predicted 91.8 17 0.00037 38.2 18.5 28 381-413 345-372 (395)
13 PF03904 DUF334: Domain of unk 90.4 18 0.00038 35.0 18.0 30 369-398 139-168 (230)
14 KOG3208 SNARE protein GS28 [In 87.5 28 0.00061 33.5 15.8 52 339-390 142-199 (231)
15 KOG3850 Predicted membrane pro 87.1 41 0.00089 35.0 17.7 14 202-215 261-274 (455)
16 PF05478 Prominin: Prominin; 85.6 55 0.0012 37.6 18.8 39 371-409 410-448 (806)
17 PF02656 DUF202: Domain of unk 82.3 9.6 0.00021 29.7 7.9 18 426-443 56-73 (73)
18 PF07332 DUF1469: Protein of u 81.3 22 0.00047 30.4 10.4 48 357-405 14-61 (121)
19 PF11286 DUF3087: Protein of u 78.3 6.9 0.00015 36.0 6.5 51 386-444 26-76 (165)
20 PRK15348 type III secretion sy 77.9 2.5 5.5E-05 41.5 3.8 42 399-440 200-247 (249)
21 TIGR02230 ATPase_gene1 F0F1-AT 72.1 28 0.00061 29.5 8.2 33 378-410 39-71 (100)
22 PF04971 Lysis_S: Lysis protei 69.0 6.2 0.00013 30.9 3.3 57 382-442 3-59 (68)
23 KOG2675 Adenylate cyclase-asso 66.5 4.9 0.00011 42.2 3.0 7 64-70 332-338 (480)
24 KOG1853 LIS1-interacting prote 66.3 1.4E+02 0.0031 29.5 12.6 73 203-275 46-124 (333)
25 KOG1924 RhoA GTPase effector D 66.2 4.5 9.9E-05 45.4 2.8 10 145-154 734-743 (1102)
26 COG5130 YIP3 Prenylated rab ac 64.7 27 0.00058 31.4 6.8 42 364-405 52-99 (169)
27 PF01102 Glycophorin_A: Glycop 62.6 13 0.00028 32.7 4.4 18 413-430 64-81 (122)
28 PF05478 Prominin: Prominin; 62.4 2.9E+02 0.0063 31.8 19.9 22 250-271 268-289 (806)
29 PF15290 Syntaphilin: Golgi-lo 58.7 2E+02 0.0044 28.8 13.2 28 338-365 147-174 (305)
30 PF10272 Tmpp129: Putative tra 58.4 17 0.00037 37.6 5.2 44 363-406 18-61 (358)
31 cd07912 Tweety_N N-terminal do 56.8 2.4E+02 0.0052 30.0 13.5 32 384-420 211-242 (418)
32 PF04156 IncA: IncA protein; 56.3 18 0.00039 33.5 4.7 20 383-402 6-25 (191)
33 PTZ00382 Variant-specific surf 54.3 2.6 5.6E-05 35.4 -1.3 15 428-442 81-95 (96)
34 PRK14584 hmsS hemin storage sy 54.2 59 0.0013 29.7 7.3 30 380-410 17-46 (153)
35 PRK02935 hypothetical protein; 54.2 1.1E+02 0.0024 26.2 8.4 25 415-439 36-60 (110)
36 KOG2751 Beclin-like protein [S 53.6 1.6E+02 0.0034 31.3 11.2 71 202-276 136-210 (447)
37 PF07798 DUF1640: Protein of u 53.0 1.9E+02 0.0041 26.7 15.4 23 245-267 76-98 (177)
38 PF11970 Git3_C: G protein-cou 52.8 34 0.00075 27.4 5.0 68 373-443 3-74 (76)
39 PF10577 UPF0560: Uncharacteri 51.2 15 0.00032 41.7 3.6 32 412-443 270-302 (807)
40 PF10856 DUF2678: Protein of u 50.8 11 0.00025 32.6 2.1 20 382-401 32-51 (118)
41 KOG1924 RhoA GTPase effector D 50.7 15 0.00032 41.5 3.4 12 144-155 657-668 (1102)
42 PF06570 DUF1129: Protein of u 50.3 44 0.00095 31.6 6.3 10 432-441 191-200 (206)
43 TIGR02132 phaR_Bmeg polyhydrox 50.2 80 0.0017 29.5 7.5 56 210-270 80-135 (189)
44 PF06127 DUF962: Protein of un 49.6 1.1E+02 0.0024 25.3 7.9 25 361-385 3-27 (95)
45 PF13042 DUF3902: Protein of u 49.5 42 0.00091 30.5 5.5 77 364-441 48-125 (161)
46 PF10805 DUF2730: Protein of u 49.0 81 0.0018 26.7 7.1 50 216-268 42-91 (106)
47 PF11026 DUF2721: Protein of u 48.9 1.9E+02 0.004 25.4 11.5 69 337-405 15-93 (130)
48 PRK10881 putative hydrogenase 48.7 64 0.0014 33.7 7.8 58 381-443 22-85 (394)
49 PF11137 DUF2909: Protein of u 48.7 98 0.0021 24.0 6.8 60 381-444 1-60 (63)
50 PF01442 Apolipoprotein: Apoli 46.2 2.2E+02 0.0047 25.4 12.1 14 212-225 8-21 (202)
51 PF04012 PspA_IM30: PspA/IM30 45.0 2.7E+02 0.0059 26.2 15.9 41 244-284 53-94 (221)
52 PF11023 DUF2614: Protein of u 44.8 1.4E+02 0.0031 25.8 7.8 25 415-439 35-59 (114)
53 PF01618 MotA_ExbB: MotA/TolQ/ 44.5 2.2E+02 0.0047 25.0 9.5 8 433-440 118-125 (139)
54 PF13273 DUF4064: Protein of u 44.5 31 0.00067 28.6 3.8 27 380-406 4-30 (100)
55 KOG4643 Uncharacterized coiled 44.4 4E+02 0.0087 31.5 13.3 67 204-283 172-238 (1195)
56 COG5487 Small integral membran 43.5 1.2E+02 0.0025 22.6 6.0 17 387-403 4-20 (54)
57 PF02060 ISK_Channel: Slow vol 43.4 32 0.0007 30.3 3.8 31 413-443 41-71 (129)
58 PF10003 DUF2244: Integral mem 43.3 79 0.0017 28.1 6.5 27 415-441 34-60 (140)
59 PF14015 DUF4231: Protein of u 43.1 1.2E+02 0.0025 25.3 7.2 6 398-403 39-44 (112)
60 COG5178 PRP8 U5 snRNP spliceos 43.0 18 0.00038 42.6 2.6 14 88-101 81-94 (2365)
61 COG1196 Smc Chromosome segrega 42.9 6.8E+02 0.015 30.2 17.6 6 397-402 514-519 (1163)
62 PF04136 Sec34: Sec34-like fam 42.7 2.1E+02 0.0045 26.0 9.2 32 241-272 27-58 (157)
63 COG3462 Predicted membrane pro 42.6 1.8E+02 0.0038 25.1 7.9 13 413-425 46-58 (117)
64 PF06196 DUF997: Protein of un 41.1 1.9E+02 0.0042 23.4 8.0 38 383-420 8-50 (80)
65 PRK15326 type III secretion sy 40.9 2E+02 0.0043 23.4 8.6 66 205-270 7-77 (80)
66 PF06645 SPC12: Microsomal sig 40.4 26 0.00056 28.1 2.5 53 381-441 10-62 (76)
67 PF10754 DUF2569: Protein of u 39.2 94 0.002 27.9 6.4 12 433-444 73-84 (149)
68 PTZ00370 STEVOR; Provisional 38.1 52 0.0011 33.0 4.8 22 260-281 110-134 (296)
69 KOG3176 Predicted alpha-helica 37.9 1.6E+02 0.0034 28.5 7.7 75 191-273 40-114 (223)
70 PRK11020 hypothetical protein; 37.3 1.7E+02 0.0038 25.3 7.1 74 217-290 6-80 (118)
71 PRK15361 pathogenicity island 37.3 3.6E+02 0.0079 25.5 10.4 47 339-385 32-87 (195)
72 PF07332 DUF1469: Protein of u 36.9 1.7E+02 0.0037 24.8 7.4 20 381-400 44-63 (121)
73 PF07889 DUF1664: Protein of u 36.5 3E+02 0.0065 24.3 12.0 23 202-224 36-58 (126)
74 TIGR01478 STEVOR variant surfa 35.9 60 0.0013 32.6 4.8 14 261-274 112-125 (295)
75 PF06210 DUF1003: Protein of u 35.9 1E+02 0.0022 26.4 5.6 34 386-419 3-38 (108)
76 PF01769 MgtE: Divalent cation 35.0 2.7E+02 0.0059 24.1 8.5 14 430-443 96-109 (135)
77 PF04341 DUF485: Protein of un 34.9 2.5E+02 0.0055 22.9 8.9 28 411-442 51-78 (91)
78 PF09990 DUF2231: Predicted me 34.8 1.6E+02 0.0034 24.5 6.6 26 382-407 6-31 (104)
79 PRK10189 MATE family multidrug 34.1 1E+02 0.0023 32.8 6.8 47 389-445 420-466 (478)
80 PF10267 Tmemb_cc2: Predicted 34.0 5.9E+02 0.013 26.9 15.3 22 247-268 249-270 (395)
81 TIGR01167 LPXTG_anchor LPXTG-m 33.7 59 0.0013 21.2 3.1 10 433-442 24-33 (34)
82 PF06570 DUF1129: Protein of u 33.3 2.1E+02 0.0046 26.9 8.0 12 391-402 90-101 (206)
83 PF02439 Adeno_E3_CR2: Adenovi 33.0 89 0.0019 21.8 3.8 10 433-442 23-32 (38)
84 PF01299 Lamp: Lysosome-associ 33.0 34 0.00074 34.4 2.7 42 401-442 258-299 (306)
85 PF13829 DUF4191: Domain of un 33.0 1.3E+02 0.0028 29.2 6.5 13 413-425 51-63 (224)
86 PF04799 Fzo_mitofusin: fzo-li 32.8 2.5E+02 0.0054 26.2 8.0 31 196-226 107-137 (171)
87 KOG1923 Rac1 GTPase effector F 32.6 40 0.00087 38.1 3.3 68 346-419 642-718 (830)
88 PF10112 Halogen_Hydrol: 5-bro 32.5 75 0.0016 29.8 4.8 21 384-404 10-30 (199)
89 PF12263 DUF3611: Protein of u 32.3 1.5E+02 0.0032 27.9 6.6 55 380-441 24-80 (183)
90 PF12761 End3: Actin cytoskele 32.1 4.5E+02 0.0098 25.0 10.0 26 241-267 96-121 (195)
91 KOG2196 Nuclear porin [Nuclear 31.9 5.1E+02 0.011 25.5 11.6 68 199-271 72-142 (254)
92 COG5415 Predicted integral mem 31.8 4.5E+02 0.0098 25.4 9.6 27 370-396 31-57 (251)
93 COG4062 MtrB Tetrahydromethano 31.5 53 0.0012 27.7 3.1 22 344-365 32-53 (108)
94 PHA03231 glycoprotein BALF4; P 30.9 2.2E+02 0.0047 32.9 8.7 22 121-142 361-383 (829)
95 PF05915 DUF872: Eukaryotic pr 30.8 2.8E+02 0.0061 24.0 7.6 11 383-393 49-59 (115)
96 KOG0994 Extracellular matrix g 30.7 4.8E+02 0.01 31.6 11.2 55 214-271 1199-1254(1758)
97 PF04799 Fzo_mitofusin: fzo-li 30.5 4E+02 0.0086 24.8 8.9 61 201-270 105-165 (171)
98 COG3763 Uncharacterized protei 30.3 58 0.0013 25.8 2.9 13 390-402 8-20 (71)
99 TIGR03141 cytochro_ccmD heme e 30.2 76 0.0016 22.6 3.4 12 432-443 22-33 (45)
100 PF11368 DUF3169: Protein of u 29.9 1.8E+02 0.004 28.2 7.2 28 375-402 6-33 (248)
101 TIGR01834 PHA_synth_III_E poly 29.3 3.8E+02 0.0081 27.5 9.3 52 220-271 267-318 (320)
102 PF05591 DUF770: Protein of un 28.9 1.1E+02 0.0024 28.0 5.1 36 241-276 111-149 (157)
103 COG4244 Predicted membrane pro 28.8 3.2E+02 0.007 25.1 8.0 32 377-408 47-78 (160)
104 PF08580 KAR9: Yeast cortical 28.8 9.1E+02 0.02 27.5 14.7 22 246-267 54-75 (683)
105 PRK02870 heat shock protein Ht 28.6 2.1E+02 0.0045 29.5 7.6 29 374-402 19-47 (336)
106 KOG4343 bZIP transcription fac 28.6 81 0.0018 34.3 4.6 76 330-410 303-383 (655)
107 PF10661 EssA: WXG100 protein 28.3 73 0.0016 28.7 3.7 8 434-441 135-142 (145)
108 COG0534 NorM Na+-driven multid 28.2 1.6E+02 0.0034 31.3 6.9 42 392-444 405-446 (455)
109 PF04129 Vps52: Vps52 / Sac2 f 28.2 2.7E+02 0.0059 30.2 8.8 70 330-406 29-98 (508)
110 PF04111 APG6: Autophagy prote 28.2 4.3E+02 0.0094 26.8 9.7 31 244-274 45-75 (314)
111 PF04995 CcmD: Heme exporter p 28.1 99 0.0021 22.1 3.7 12 432-443 21-32 (46)
112 PF05377 FlaC_arch: Flagella a 28.0 1.3E+02 0.0028 22.7 4.4 23 247-269 19-41 (55)
113 PF14163 SieB: Superinfection 28.0 1.7E+02 0.0036 26.2 6.0 20 381-400 4-23 (151)
114 KOG3684 Ca2+-activated K+ chan 27.8 8E+02 0.017 26.5 13.2 39 237-275 384-422 (489)
115 PRK15122 magnesium-transportin 27.4 1.6E+02 0.0035 34.4 7.2 18 134-151 547-564 (903)
116 PF08317 Spc7: Spc7 kinetochor 27.2 6.7E+02 0.015 25.4 15.2 15 81-95 15-29 (325)
117 PF04504 DUF573: Protein of un 27.0 1.3E+02 0.0029 25.1 4.8 59 199-257 12-71 (98)
118 PF10498 IFT57: Intra-flagella 26.4 7.2E+02 0.016 25.8 11.1 42 347-388 312-355 (359)
119 KOG4433 Tweety transmembrane/c 26.4 4.7E+02 0.01 28.4 9.6 18 427-444 221-238 (526)
120 PRK10517 magnesium-transportin 25.8 2.1E+02 0.0044 33.6 7.7 49 390-443 853-901 (902)
121 PF14257 DUF4349: Domain of un 25.8 4E+02 0.0086 25.9 8.8 36 349-384 148-185 (262)
122 KOG1277 Endosomal membrane pro 25.6 1.7E+02 0.0037 31.6 6.2 27 380-406 399-425 (593)
123 PF05802 EspB: Enterobacterial 25.1 4.7E+02 0.01 26.3 8.8 41 363-403 73-115 (317)
124 PF01284 MARVEL: Membrane-asso 25.1 3.6E+02 0.0077 22.9 7.5 8 414-421 42-49 (144)
125 PF11712 Vma12: Endoplasmic re 25.1 4.8E+02 0.01 23.0 11.9 10 395-404 92-101 (142)
126 PF04956 TrbC: TrbC/VIRB2 fami 24.4 96 0.0021 25.4 3.5 23 374-396 39-62 (99)
127 PF05568 ASFV_J13L: African sw 24.2 93 0.002 28.2 3.5 28 414-442 30-57 (189)
128 PF12270 Cyt_c_ox_IV: Cytochro 24.1 2.4E+02 0.0051 25.3 6.1 54 385-438 39-111 (137)
129 PF00746 Gram_pos_anchor: Gram 24.1 26 0.00056 23.9 0.0 10 432-441 30-39 (39)
130 PF05377 FlaC_arch: Flagella a 24.0 3.1E+02 0.0068 20.7 5.7 36 244-279 9-44 (55)
131 PF15086 UPF0542: Uncharacteri 23.9 1.4E+02 0.0031 23.8 4.0 28 411-438 17-44 (74)
132 PRK13182 racA polar chromosome 23.5 3.2E+02 0.0069 25.4 7.1 27 242-268 118-144 (175)
133 PF09432 THP2: Tho complex sub 23.5 3.1E+02 0.0067 24.3 6.5 66 202-268 39-104 (132)
134 PRK09752 adhesin; Provisional 23.3 68 0.0015 38.2 3.1 11 64-74 986-996 (1250)
135 PRK15244 virulence protein Spv 23.1 51 0.0011 36.2 2.0 33 123-155 424-460 (591)
136 PF13140 DUF3980: Domain of un 22.9 2.5E+02 0.0054 22.5 5.2 26 382-407 12-37 (87)
137 TIGR00807 malonate_madL malona 22.9 2.2E+02 0.0048 24.9 5.4 52 384-445 6-57 (125)
138 PF05597 Phasin: Poly(hydroxya 22.8 4.6E+02 0.01 23.2 7.7 21 248-268 108-128 (132)
139 PF07462 MSP1_C: Merozoite sur 22.8 1.1E+02 0.0023 33.5 4.2 17 124-140 367-383 (574)
140 PF06609 TRI12: Fungal trichot 22.7 1E+02 0.0022 34.3 4.3 47 372-423 160-206 (599)
141 PRK13682 hypothetical protein; 22.7 78 0.0017 23.5 2.3 17 387-403 4-20 (51)
142 PF10168 Nup88: Nuclear pore c 22.7 1.2E+03 0.026 26.7 14.3 35 240-274 577-611 (717)
143 PF05360 YiaAB: yiaA/B two hel 22.6 2E+02 0.0044 21.2 4.6 39 383-425 3-41 (53)
144 PF14235 DUF4337: Domain of un 22.6 5.9E+02 0.013 23.2 11.1 37 331-367 68-104 (157)
145 PF06103 DUF948: Bacterial pro 22.5 4.1E+02 0.0089 21.3 8.3 57 207-268 24-80 (90)
146 PF05461 ApoL: Apolipoprotein 22.3 7.4E+02 0.016 25.2 10.1 12 259-270 32-43 (313)
147 PF04226 Transgly_assoc: Trans 22.3 1.9E+02 0.0041 20.9 4.3 11 393-403 10-20 (48)
148 PF11902 DUF3422: Protein of u 22.3 9.6E+02 0.021 25.5 20.8 35 338-372 300-334 (420)
149 KOG2675 Adenylate cyclase-asso 21.7 72 0.0016 33.9 2.7 10 20-29 232-241 (480)
150 PF00901 Orbi_VP5: Orbivirus o 21.7 5.4E+02 0.012 28.0 9.1 76 199-275 141-221 (508)
151 PF02388 FemAB: FemAB family; 21.7 4E+02 0.0087 27.9 8.4 58 208-267 241-298 (406)
152 PF07889 DUF1664: Protein of u 21.7 3.9E+02 0.0085 23.6 6.9 22 245-266 92-113 (126)
153 KOG2391 Vacuolar sorting prote 21.5 9.2E+02 0.02 25.0 12.8 13 333-345 301-313 (365)
154 PF01957 NfeD: NfeD-like C-ter 21.4 32 0.00069 29.8 0.1 17 390-406 24-40 (144)
155 PF11669 WBP-1: WW domain-bind 21.2 1.2E+02 0.0025 25.7 3.5 9 414-422 22-30 (102)
156 PF12597 DUF3767: Protein of u 21.2 2.3E+02 0.005 24.6 5.4 28 407-442 64-91 (118)
157 PF12325 TMF_TATA_bd: TATA ele 21.2 5.6E+02 0.012 22.3 9.3 25 247-271 35-59 (120)
158 PF03649 UPF0014: Uncharacteri 21.0 6.4E+02 0.014 24.8 9.1 63 337-402 144-210 (250)
159 PF11857 DUF3377: Domain of un 21.0 53 0.0011 26.3 1.2 23 420-442 36-58 (74)
160 PRK08456 flagellar motor prote 21.0 1.8E+02 0.0039 28.6 5.3 43 383-427 3-47 (257)
161 COG4267 Predicted membrane pro 20.9 7.8E+02 0.017 26.2 9.8 67 372-442 325-392 (467)
162 TIGR00833 actII Transport prot 20.9 2.9E+02 0.0062 32.4 7.7 39 385-423 277-315 (910)
163 TIGR03358 VI_chp_5 type VI sec 20.9 1.6E+02 0.0036 27.0 4.5 36 241-276 112-150 (159)
164 PRK13021 secF preprotein trans 20.9 4E+02 0.0086 27.0 7.7 24 372-397 222-245 (297)
165 PF15125 TMEM238: TMEM238 prot 20.9 4.1E+02 0.0089 20.7 6.5 19 384-402 9-27 (65)
166 KOG2678 Predicted membrane pro 20.8 1.3E+02 0.0028 29.3 3.9 18 422-439 221-238 (244)
167 PF10176 DUF2370: Protein of u 20.8 1.4E+02 0.003 29.2 4.3 33 411-443 189-221 (233)
168 PF13127 DUF3955: Protein of u 20.7 3.9E+02 0.0085 20.6 6.0 9 432-440 54-62 (63)
169 PF14584 DUF4446: Protein of u 20.7 2.1E+02 0.0046 25.9 5.2 40 329-368 39-78 (151)
170 PF09788 Tmemb_55A: Transmembr 20.6 63 0.0014 31.9 1.9 24 415-438 228-251 (256)
171 PF08173 YbgT_YccB: Membrane b 20.6 1.9E+02 0.004 18.9 3.4 13 415-427 3-15 (28)
172 PF06160 EzrA: Septation ring 20.6 1.1E+03 0.025 25.8 12.1 117 203-367 62-178 (560)
173 PF08113 CoxIIa: Cytochrome c 20.6 2.7E+02 0.0059 18.8 4.3 26 410-435 2-27 (34)
174 PF13851 GAS: Growth-arrest sp 20.5 7.3E+02 0.016 23.4 9.3 34 237-270 22-55 (201)
175 PF00957 Synaptobrevin: Synapt 20.4 4.5E+02 0.0097 21.0 11.6 37 332-368 10-46 (89)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-78 Score=602.33 Aligned_cols=361 Identities=53% Similarity=0.847 Sum_probs=318.6
Q ss_pred cccccCCCcccCCCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhhhCCCCCccceeEeecCeeEeeccceeeEEe
Q 013287 49 VSAATGKGKKKAGGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVT 128 (446)
Q Consensus 49 ~~~~~~~~~~~~~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~Ld~~~~~~~~Il~Re~aIlvnle~IraII~ 128 (446)
.....+..+|+..+.+.|+.||..|+++..++||+.|+++.||+|||||++||.|+|+++|+.||+|||+|+||||||||
T Consensus 50 ~~~~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIIt 129 (414)
T KOG2662|consen 50 KIDSSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIIT 129 (414)
T ss_pred cccCcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeee
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHHHH
Q 013287 129 SQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALE 208 (446)
Q Consensus 129 ~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~iL~ 208 (446)
+|+|++||..++ ++++.+++++|+...... . +.+... + ....+.+||||+|||++|+
T Consensus 130 aeeVll~d~~~~-v~~~~~el~~~l~~~~~~----~--------------~~q~s~--~--~~~~~~lPFEFrALE~aLe 186 (414)
T KOG2662|consen 130 ADEVLLLDSLDP-VIPYNEELQRRLPVELES----R--------------GNQLSS--D--GGSKDELPFEFRALEVALE 186 (414)
T ss_pred hhheeEeccccc-cchHHHHHHHHhcccccc----c--------------ccccCC--C--CCCCCCCchHHHHHHHHHH
Confidence 999999999887 889999999999865321 0 001100 0 1114789999999999999
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhhhh
Q 013287 209 VVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQ 288 (446)
Q Consensus 209 ~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~~~ 288 (446)
.+|+.|+.++.+||..++++||+|+.++++.+|++|+.+|++|+.+.++++++||+|+++||||+||++||||+|+.+++
T Consensus 187 ~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~ 266 (414)
T KOG2662|consen 187 AACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQAS 266 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred hhhcCCCCCCCCCCCcc----chhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 289 QAEALPGPAASNSIVPK----ASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTED 364 (446)
Q Consensus 289 ~~~~~~~~~~~N~~~~~----~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~ 364 (446)
+ +|++ |+ +++..|..+.+..+ +.. .++++||+|||||+||+|+|++.++++++++|+|+||+
T Consensus 267 ~---------~~~~-~~sp~~~~~~~r~~~~~~~s--~~~--~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd 332 (414)
T KOG2662|consen 267 S---------PESA-PTSPTIKAGISRAKSNRASS--TVR--GEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTED 332 (414)
T ss_pred c---------cccC-CCCccccCCccchhhcccch--hcc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4 2221 11 11222322222111 221 37999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013287 365 YVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL 444 (446)
Q Consensus 365 ~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl 444 (446)
+++|+||++||+++++++.||+.|++++.+++|||+||||+++.+|+.+|+|||++++++++|++++++.++|+|+||++
T Consensus 333 ~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~ 412 (414)
T KOG2662|consen 333 IINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEEDHYAFKWVVGITFTLCIVLFVVILGYAKLKRLL 412 (414)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 013287 445 GT 446 (446)
Q Consensus 445 ~~ 446 (446)
+.
T Consensus 413 ~~ 414 (414)
T KOG2662|consen 413 GL 414 (414)
T ss_pred CC
Confidence 74
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-36 Score=301.18 Aligned_cols=274 Identities=21% Similarity=0.260 Sum_probs=228.6
Q ss_pred ceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeEe--------------eccceeeEE
Q 013287 63 ARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMVV--------------NLEFIKAIV 127 (446)
Q Consensus 63 ~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIlv--------------nle~IraII 127 (446)
...|++++..++.+. + .|.+.+|||+..++. +|. +++|+++..++...+ ..+++++|+
T Consensus 32 ~~~Widl~~p~~~e~-~----~l~~~~~l~~~~~ed~~~~--~~r~r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~ 104 (322)
T COG0598 32 GFVWIDLVEPDDEEL-E----WLAKTFGLHPLALEDLLDA--EQRPKVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIV 104 (322)
T ss_pred CeEEEECCCCCHHHH-H----HHHHhcCCCcchHHHHhCc--ccCCceEeeCCEEEEEEEeeccccccccccceeEEEEE
Confidence 378999999999887 3 799999999999998 666 889999998874332 266889999
Q ss_pred ecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHHH
Q 013287 128 TSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIAL 207 (446)
Q Consensus 128 ~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~iL 207 (446)
+.+.+++++... .+.++.++.|+...... ....+.+ -+.++|.+.
T Consensus 105 ~~~~liT~r~~~---~~~~~~vr~r~~~~~~~------------------------------~~~~~~l--~~~lld~i~ 149 (322)
T COG0598 105 GKRRLITIRHRP---LPAFDRVRERLEKGTLL------------------------------TRGADEL--LYALLDAIV 149 (322)
T ss_pred eCCEEEEEecCC---CccHHHHHHHHhccccc------------------------------cCCHHHH--HHHHHHHHH
Confidence 999999998854 35788999998753110 1112233 346777777
Q ss_pred HHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhhh
Q 013287 208 EVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQN 287 (446)
Q Consensus 208 ~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~~ 287 (446)
+.+...++ .++++++.+.+.+..+.....+++|..+++.+..+++.+.+.++++..+.+.+.+. +.
T Consensus 150 d~~~~~le----~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~----~~------ 215 (322)
T COG0598 150 DNYFPVLE----QIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDW----LS------ 215 (322)
T ss_pred HhhHHHHH----HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccc----CC------
Confidence 77777766 57777788888887766667899999999999999999999999999999985431 11
Q ss_pred hhhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 013287 288 QQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYIDDTEDYV 366 (446)
Q Consensus 288 ~~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i~~~~~~i 366 (446)
.-...|++|+ ||+.+.++.+..+.+.+..+.
T Consensus 216 ------------------------------------------------~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~ 247 (322)
T COG0598 216 ------------------------------------------------EEDREYLRDVLDHLTQLIEMLEALRERLSSLL 247 (322)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1137788998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013287 367 NIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLY-ETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL 444 (446)
Q Consensus 367 ~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e-~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl 444 (446)
+.+++..+|++|++||+||++|++|+|+|+|||+|||||++||| +|+||||+++++|+++| +++++||||||||
T Consensus 248 d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~----~~~~~~frrk~Wl 322 (322)
T COG0598 248 DAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLA----LLLYLYFRRKGWL 322 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHH----HHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999 99999999999876644 5889999999997
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=6.2e-34 Score=286.19 Aligned_cols=280 Identities=17% Similarity=0.209 Sum_probs=218.4
Q ss_pred cCCCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeEe-------------ecccee
Q 013287 59 KAGGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMVV-------------NLEFIK 124 (446)
Q Consensus 59 ~~~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIlv-------------nle~Ir 124 (446)
...+...|+++.+..+.+.++ .+++.||+|+.+++. +++ +++|++...++..++ ..+++.
T Consensus 22 ~~~~~~~Widl~~p~~~e~~~----~l~~~~~l~~~~~ed~~~~--~~~~k~e~~~~~~~i~~~~~~~~~~~~~~~~~l~ 95 (318)
T TIGR00383 22 QELNTVLWIDLIEPTDEETLA----KLGQFFAIHPLALEDILNS--PQRPKVEEDEDHLFIISFFLNEDEDDTFETEQVS 95 (318)
T ss_pred CCCCceEEEEccCCCcHHHHH----HHHHHcCcCcchHHHhhCC--CCCCcEEEECCEEEEEEEeeeccCCCcceeEEEE
Confidence 455678999999998887433 799999999999997 565 677888777765442 346789
Q ss_pred eEEecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHH
Q 013287 125 AIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLE 204 (446)
Q Consensus 125 aII~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE 204 (446)
++++.+.++++.+.+. +.++.+++++..... .. ... |. .++-
T Consensus 96 ~~l~~~~liTv~~~~~---~~~~~~~~~~~~~~~----------------------~~-------~~~----~~--~ll~ 137 (318)
T TIGR00383 96 FILGKNLLFTIHEREL---PAFDSIRERIRTSQK----------------------VF-------EKG----AD--YLLY 137 (318)
T ss_pred EEEECCEEEEEEcCCC---CcHHHHHHHHHhCch----------------------hh-------hCC----HH--HHHH
Confidence 9999999999977653 468888887653210 00 001 21 2444
Q ss_pred HHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhhcchh
Q 013287 205 IALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNE-DMAHLYLTRR 283 (446)
Q Consensus 205 ~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~-dm~~m~Lt~~ 283 (446)
.+++.+...+...++.++++++.+.+.+.+......++++..+|+++..+++.+.+.+++++.+.+.+. .. ++
T Consensus 138 ~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~----~~-- 211 (318)
T TIGR00383 138 DIFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPI----QT-- 211 (318)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc----CC--
Confidence 444444444445555678887888777766656677899999999999999999999999999987532 10 00
Q ss_pred hhhhhhhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 013287 284 RIQNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYIDDT 362 (446)
Q Consensus 284 ~~~~~~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i~~~ 362 (446)
.-...|++|+ |++.+..+.++.+.+.+
T Consensus 212 ----------------------------------------------------~~~~~~~~dv~~~~~~l~~~~~~~~e~l 239 (318)
T TIGR00383 212 ----------------------------------------------------EEVREYLRDIYDHILSLLEMIETYRELL 239 (318)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0135688888 78888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 363 EDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLY-ETDGIFEIFVGSTTTACVLLFLLVLGYARWK 441 (446)
Q Consensus 363 ~~~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e-~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk 441 (446)
+.+++.+++..+|++|++|++||++|++|+|+|+|||+|||||++||| +|+||||+++++|+++| +++++|||||
T Consensus 240 ~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~----~~~~~~fkrk 315 (318)
T TIGR00383 240 SSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIA----LGPLIYFRRK 315 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHH----HHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999 99999999999886544 5789999999
Q ss_pred Ccc
Q 013287 442 KLL 444 (446)
Q Consensus 442 ~wl 444 (446)
|||
T Consensus 316 ~Wl 318 (318)
T TIGR00383 316 GWL 318 (318)
T ss_pred CCC
Confidence 997
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=2.4e-32 Score=275.93 Aligned_cols=273 Identities=13% Similarity=0.140 Sum_probs=205.6
Q ss_pred CceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeEee--------------ccceeeE
Q 013287 62 GARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMVVN--------------LEFIKAI 126 (446)
Q Consensus 62 ~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIlvn--------------le~IraI 126 (446)
+...|+.++.....+. ..|.+ ++.++..++. +.. -+++|++...++.+++. +.+++++
T Consensus 35 ~~~~Wi~l~~~~~~e~-----~~L~~-~~~~~~~~~d~l~~-~~~rpk~e~~~~~~~iil~~~~~~~~~~~~~~~~l~~~ 107 (324)
T PRK09546 35 AHPCWLHLDYTHPDSA-----QWLAT-TPLLPDNVRDALAG-ESTRPRVSRLGEGTLITLRCINGNTDERPDQLVAMRVY 107 (324)
T ss_pred CCCEEEEeCCCChhHH-----HHHHh-cCCCCHHHHHHHhC-CCCCCcEEEECCEEEEEEEeccCCCCCChhheEEEEEE
Confidence 4568999987655542 24554 4667777665 432 15789998888765532 2347999
Q ss_pred EecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHH
Q 013287 127 VTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIA 206 (446)
Q Consensus 127 I~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~i 206 (446)
+++|+++++...+. ++++.+++++..... . .. .. -+-+.+++.+
T Consensus 108 l~~~~lITv~~~~~---~~~~~~~~~~~~~~~----------------------~--------~~-~~--~ll~~lld~i 151 (324)
T PRK09546 108 ITDRLIVSTRHRKV---LALDDVVSDLQEGTG----------------------P--------TD-CG--GWLVDVCDAL 151 (324)
T ss_pred EeCCEEEEEecCCc---ccHHHHHHHHHhCCC----------------------C--------CC-HH--HHHHHHHHHH
Confidence 99999999976653 568888888754210 0 00 11 1233556666
Q ss_pred HHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhh
Q 013287 207 LEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQ 286 (446)
Q Consensus 207 L~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~ 286 (446)
++.+...+ +.+++.++.+++.+....++ .++++..+|+++..+++.+.+.|+++..+.+.+... +++
T Consensus 152 vd~~~~~l----~~i~~~ld~lE~~l~~~~~~-~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~----~~~---- 218 (324)
T PRK09546 152 TDHASEFI----EELHDKIIDLEDNLLDQQIP-PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPW----MSD---- 218 (324)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cCh----
Confidence 55555544 45677777776666543222 467899999999999999999999999998753110 110
Q ss_pred hhhhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 013287 287 NQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYIDDTEDY 365 (446)
Q Consensus 287 ~~~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i~~~~~~ 365 (446)
-...||+|+ |++.+.++.++.+++.+..+
T Consensus 219 --------------------------------------------------~~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l 248 (324)
T PRK09546 219 --------------------------------------------------DDRRRMQDIADRLGRGLDDLDACIARTAVL 248 (324)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 026789998 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013287 366 VNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLY-ETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL 444 (446)
Q Consensus 366 i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e-~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl 444 (446)
.+.+.+..+|++|++|++||++|++|+|+|||||+|||||++||| +|+||||+++++|++ +++++++||||||||
T Consensus 249 ~d~~~s~~s~~~N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~----i~~~~~~~fkrk~Wl 324 (324)
T PRK09546 249 ADEIASVMAEAMNRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVV----LIGGVAWWLKRSKWL 324 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHH----HHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999 999999999987765 445889999999997
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.97 E-value=4.1e-29 Score=250.61 Aligned_cols=271 Identities=14% Similarity=0.152 Sum_probs=185.3
Q ss_pred ceEEEEEcCCCCeeEEeechhhhHHHhCCC---hhhhhhhCCCCCccceeEeecCeeEe-------------eccceeeE
Q 013287 63 ARLWMRFDFTGKSELVECDKSVIIERAGVP---ARDLRILGPVFSHSSNILAREKAMVV-------------NLEFIKAI 126 (446)
Q Consensus 63 ~~~W~~id~~g~~~~~e~~k~~i~~~~~L~---~RDLr~Ld~~~~~~~~Il~Re~aIlv-------------nle~IraI 126 (446)
...|+.+......+.- .+.+.+|++ ..|++.+.. .|++..+++++.+ ..+.|.+|
T Consensus 25 ~~vWiDl~~Pt~eE~~-----~v~~~~gl~~pt~~~~eeIe~----ssR~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fi 95 (316)
T PRK11085 25 DAVWIDLVEPDDDERL-----RVQSELGQSLATRPELEDIEA----SARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAFT 95 (316)
T ss_pred CCEEEEcCCCCHHHHH-----HHHHHhCCCCCChhhHHHHhh----CceEEEECCeEEEEEEEEecCCCCCccceeEEEE
Confidence 5799999888776653 788999999 888887765 2566665555443 34578999
Q ss_pred EecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHH
Q 013287 127 VTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIA 206 (446)
Q Consensus 127 I~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~i 206 (446)
++.|.++++...+. +.|+.+++|+...... ..+... .-+.++|++
T Consensus 96 l~~~~LvTvr~~~~---~~f~~~~~r~~~~~~~------------------------------~~~~~~--vl~~Lld~i 140 (316)
T PRK11085 96 IRDGRLFTLREREL---PAFRLYRMRARSQTLV------------------------------DGNAYE--LLLDLFETK 140 (316)
T ss_pred EECCEEEEEecCCc---chHHHHHHHHHhCCcc------------------------------cCCHHH--HHHHHHHHH
Confidence 99999999987764 4688888888643100 011112 234678998
Q ss_pred HHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcch
Q 013287 207 LEVVCTYLDSSVAELEKDAYPVLDELARNVST----KNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTR 282 (446)
Q Consensus 207 L~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~----~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~ 282 (446)
++.+...+|.--.++|.....++ .+..+ +.++++..+++.+..+++.+.++++++..+.+..
T Consensus 141 Vd~~ad~lE~~~~~ld~ls~~if----~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~---------- 206 (316)
T PRK11085 141 IEQLADEIENIYSDLEKLSRVIM----EGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKA---------- 206 (316)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhc----cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Confidence 88888888765555554443333 22111 1233333334444444444444444444443210
Q ss_pred hhhhhhhhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 283 RRIQNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDT 362 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~ 362 (446)
....++.+. +..+++|++.+...++. ..+.+
T Consensus 207 ---------------------------------------------~~~~~~~~~-~~~~~~Di~~l~~~~~~---~~~~~ 237 (316)
T PRK11085 207 ---------------------------------------------RLPGGQLEQ-AREILRDIESLLPHNES---LFQKV 237 (316)
T ss_pred ---------------------------------------------cCChhHHHH-HHHHHHHHHHHHHHHHH---HHHHH
Confidence 000011112 35777888777665544 46677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 363 EDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLY-ETDGIFEIFVGSTTTACVLLFLLVLGYARWK 441 (446)
Q Consensus 363 ~~~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e-~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk 441 (446)
..+++.+++..+|++|++||+||++|++|+|+|+|||+|||||++||+ +|+||||+++++|++++ +++++|||||
T Consensus 238 ~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~----~~~~~~f~rk 313 (316)
T PRK11085 238 NFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAG----LAPYLYFKRK 313 (316)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHH----HHHHHHHHHc
Confidence 788899999999999999999999999999999999999999999999 99999999998876544 5789999999
Q ss_pred Ccc
Q 013287 442 KLL 444 (446)
Q Consensus 442 ~wl 444 (446)
|||
T Consensus 314 ~Wl 316 (316)
T PRK11085 314 NWL 316 (316)
T ss_pred ccC
Confidence 997
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.96 E-value=7.6e-28 Score=237.22 Aligned_cols=273 Identities=21% Similarity=0.288 Sum_probs=201.0
Q ss_pred CceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeEeec--------------cceeeE
Q 013287 62 GARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMVVNL--------------EFIKAI 126 (446)
Q Consensus 62 ~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIlvnl--------------e~IraI 126 (446)
+...|+.+.+..+.+.. .|.+++|||+..++. +++ ..+|++...++++++.+ .++.++
T Consensus 2 ~~~~Wi~~~~~~~~~~~-----~l~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 74 (292)
T PF01544_consen 2 DGFVWIDLSGPDDEELE-----WLAEEFGLHPLTIEDALDP--EERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFI 74 (292)
T ss_dssp SS-EEEEEETTTCHHHH-----HHHHTTTS-HHHHHHHCCT--SSSSEEEEETTEEEEEEEEEEESTTCCECCEEEEEEE
T ss_pred CccEEEEEeCCCHHHHH-----HHHHHhCcCHhHHHHHhCC--CcCCEEEEECCeEEEEEEEcchhhcccccccceEEEE
Confidence 35799999999998553 799999999999995 776 78899998888666421 157999
Q ss_pred EecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHH
Q 013287 127 VTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIA 206 (446)
Q Consensus 127 I~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~i 206 (446)
++.+.+++++..+ .++++.+++++.... .. ..-|+ .++..+
T Consensus 75 ~~~~~lit~~~~~---~~~~~~~~~~~~~~~-----------------------~~-----------~~~~~--~ll~~i 115 (292)
T PF01544_consen 75 LGDNFLITVHRDP---LPFIDELRERLESRN-----------------------ER-----------PSSPE--DLLYAI 115 (292)
T ss_dssp EETTEEEEEESSS---SHCHHHHHHHHHSTT-----------------------CS-----------CSSHH--HHHHHH
T ss_pred EecceEEEEECCC---ChHHHHHHHHhhccC-----------------------CC-----------CCCHH--HHHHHH
Confidence 9999999998876 367888888876111 00 01133 566777
Q ss_pred HHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cchhhhhhhcchhhh
Q 013287 207 LEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLD-DNEDMAHLYLTRRRI 285 (446)
Q Consensus 207 L~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~-dd~dm~~m~Lt~~~~ 285 (446)
++.++..+...++.+++.+..+.+.+.+......+.++..+++.+..+++.+.+.++++.++++ ++... +
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~----~----- 186 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPF----I----- 186 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTT----S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhh----h-----
Confidence 7777777777777888888888888866666777889999999999999999999999988887 21110 0
Q ss_pred hhhhhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 013287 286 QNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYIDDTED 364 (446)
Q Consensus 286 ~~~~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i~~~~~ 364 (446)
..+ ...|++++ +++....+.++...+.++.
T Consensus 187 -----------------------------------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (292)
T PF01544_consen 187 -----------------------------------------SDE--------DKEYLRDLLDRIERLLERAESLRERLES 217 (292)
T ss_dssp -----------------------------------------HCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------hhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 13345555 5555566666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013287 365 YVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLY-ETDGIFEIFVGSTTTACVLLFLLVLGYARW 440 (446)
Q Consensus 365 ~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e-~~~~~f~~v~~~~~~~~~~i~~~~~~yfrr 440 (446)
+.+.+.+..++++|++|++||++|++|+|+|||||+|||||.++|+ +|+|||+++++ +++|+++++++++||||
T Consensus 218 l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~--~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 218 LQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFVII--LGLMILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH----HHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCccCCccHHHHHHH--HHHHHHHHHHHHHheeC
Confidence 8888999999999999999999999999999999999999998777 88887766622 12344566678888886
No 7
>PRK09546 zntB zinc transporter; Reviewed
Probab=96.64 E-value=0.18 Score=51.12 Aligned_cols=38 Identities=11% Similarity=0.048 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 362 TEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAG 399 (446)
Q Consensus 362 ~~~~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaG 399 (446)
+.+.....+++..|+.++++.++|++.+..+..|=|.|
T Consensus 248 l~d~~~s~~s~~~N~~m~~Ltilt~IflPlT~IaGiyG 285 (324)
T PRK09546 248 LADEIASVMAEAMNRRTYTMSLMAMVFLPTTFLTGLFG 285 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333444444455555555555555555544444444
No 8
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=95.17 E-value=4.3 Score=41.36 Aligned_cols=99 Identities=15% Similarity=-0.036 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHH
Q 013287 343 MQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNEL-IQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVG 421 (446)
Q Consensus 343 ~~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN~l-~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~ 421 (446)
.++..+...++.+.++.+...+.++..+|...+.+ ++...++-++|++-++....+=+.|+ +..-+...|..-|....
T Consensus 214 ~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagi-yGMNf~~mP~~~~~~g~ 292 (316)
T PRK11085 214 EQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASS-YGMNFEFMPELKWSFGY 292 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCCCCCCCCcHHH
Confidence 34566677777888888888888888888886665 56778888999999999999999997 44334457765555432
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcc
Q 013287 422 STTTACVLLFLLVLGYARWKKLL 444 (446)
Q Consensus 422 ~~~~~~~~i~~~~~~yfrrk~wl 444 (446)
. +++++++++.+..+++-||-
T Consensus 293 ~--~~l~~~~~~~~~~~~~f~rk 313 (316)
T PRK11085 293 P--GAIILMILAGLAPYLYFKRK 313 (316)
T ss_pred H--HHHHHHHHHHHHHHHHHHHc
Confidence 2 23455667777788776664
No 9
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=95.16 E-value=0.49 Score=46.37 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCCCCCCCCch
Q 013287 339 EAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGI--FGMNIPCQLYETDGI 415 (446)
Q Consensus 339 e~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGi--fGMN~~~~~e~~~~~ 415 (446)
+....++..+.+.++.+.+.++.+.+.....++...|+.++..-++|++-+=++..|-+.|. .||.....+..+.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~ 273 (292)
T PF01544_consen 195 RDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFV 273 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCccCCccHHHHH
Confidence 33445666677777888888889999999999999999999999999999998888888887 668876655545444
No 10
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=94.87 E-value=1.9 Score=43.26 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-cccCCCCCCCCCchHHHHHH
Q 013287 344 QLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGI-F-GMNIPCQLYETDGIFEIFVG 421 (446)
Q Consensus 344 ~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGi-f-GMN~~~~~e~~~~~f~~v~~ 421 (446)
+++.+.+.++.+++.++.+.+...-..++..|+.+++.-++|++-+..+..|=+.|. | ||=....+..+++. +.+++
T Consensus 224 ~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~-l~~m~ 302 (318)
T TIGR00383 224 HILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAV-LIVMA 302 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHH-HHHHH
Confidence 444555556677777778888888888999999999999999999999999988886 3 45554544555544 44444
Q ss_pred HHHHHHHH
Q 013287 422 STTTACVL 429 (446)
Q Consensus 422 ~~~~~~~~ 429 (446)
++++++++
T Consensus 303 ~i~~~~~~ 310 (318)
T TIGR00383 303 VIALGPLI 310 (318)
T ss_pred HHHHHHHH
Confidence 44555653
No 11
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=94.16 E-value=3.8 Score=41.59 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHH--HH
Q 013287 345 LDGTRNKILSVREYIDDTEDYVNIQLDNQRNEL-IQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIF--VG 421 (446)
Q Consensus 345 ~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN~l-~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v--~~ 421 (446)
++++...+..+.+..+..++.++.-+|...+.+ |+...++-++|.+-++..-.|=+.|- |.+-+...|..=|.. ++
T Consensus 222 l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagi-yGMNf~~mPel~~~~Gy~~ 300 (322)
T COG0598 222 LRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGF-YGMNFKGMPELDWPYGYPI 300 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcc-cccCCCCCcCCCCcccHHH
Confidence 356666666665666666666665666654444 34555566666666666666666662 222222345333332 22
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 013287 422 STTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 422 ~~~~~~~~i~~~~~~yfrrk~w 443 (446)
+|++++++.++.+++-|+
T Consensus 301 ----~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 301 ----ALILMLLLALLLYLYFRR 318 (322)
T ss_pred ----HHHHHHHHHHHHHHHHHh
Confidence 334455555655555443
No 12
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=91.76 E-value=17 Score=38.17 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 013287 381 QLILTIASFAIAANTLIAGIFGMNIPCQLYETD 413 (446)
Q Consensus 381 ~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~ 413 (446)
..+||++++++...+.+++ |..|+-.+.
T Consensus 345 nllL~l~~vlLv~vSt~~~-----~~~Pl~~tR 372 (395)
T PF10267_consen 345 NLLLTLLTVLLVFVSTVAN-----CPLPLTRTR 372 (395)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCcHHhhcc
Confidence 3456666666655555554 455555565
No 13
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=90.42 E-value=18 Score=35.00 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 369 QLDNQRNELIQLQLILTIASFAIAANTLIA 398 (446)
Q Consensus 369 ~Ld~~rN~l~~~~~~LTi~s~i~~p~t~Ia 398 (446)
.++..+++...+.+-++.+-++|+..++|.
T Consensus 139 ~~E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 139 SHEKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344557778887778888888887777766
No 14
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.54 E-value=28 Score=33.55 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 013287 339 EAYFMQLDGTRNKILSVREYIDDTEDYVN------IQLDNQRNELIQLQLILTIASFA 390 (446)
Q Consensus 339 e~Y~~~~d~~~~~i~~l~~~i~~~~~~i~------i~Ld~~rN~l~~~~~~LTi~s~i 390 (446)
|.|+++-+|+.+....+++.|+.+...-+ ..|...+|+++.+-..+-.+..+
T Consensus 142 e~~lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~L 199 (231)
T KOG3208|consen 142 EMYLKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQL 199 (231)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHH
Confidence 66777766666666666655655544322 24555677777665555444433
No 15
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=87.09 E-value=41 Score=35.01 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhh
Q 013287 202 VLEIALEVVCTYLD 215 (446)
Q Consensus 202 ~LE~iL~~v~~~Le 215 (446)
+|++++++.-...+
T Consensus 261 ~l~aileeL~eIk~ 274 (455)
T KOG3850|consen 261 ALDAILEELREIKE 274 (455)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666665554443
No 16
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=85.59 E-value=55 Score=37.64 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 013287 371 DNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQL 409 (446)
Q Consensus 371 d~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~ 409 (446)
+..|.-..-+.-.+.++-+++...+++.|++|-.=...|
T Consensus 410 ~~yR~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p 448 (806)
T PF05478_consen 410 DSYRWIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRADP 448 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 344555544444455555566778999999996655433
No 17
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=82.33 E-value=9.6 Score=29.72 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhcCc
Q 013287 426 ACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 426 ~~~~i~~~~~~yfrrk~w 443 (446)
+.+++..+.+.|++++||
T Consensus 56 ~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 56 GLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344455678889999998
No 18
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=81.26 E-value=22 Score=30.43 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 013287 357 EYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNI 405 (446)
Q Consensus 357 ~~i~~~~~~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~ 405 (446)
++.+.--++...++.....++.. ...+.+++.++...+++...++..+
T Consensus 14 ~lv~~~i~La~~E~~~~~~~~~~-~~~~~~~a~vl~~~~l~~l~~al~~ 61 (121)
T PF07332_consen 14 TLVRTRIELAKAELREKARRLGR-GLALLVLAAVLALLALLFLLVALVF 61 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433 3344455555555555555544444
No 19
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=78.29 E-value=6.9 Score=36.04 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013287 386 IASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL 444 (446)
Q Consensus 386 i~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl 444 (446)
.+.+.++..+....+|| .++..-|++=++|.+++++ +.++++..+|.+-|+
T Consensus 26 lai~sl~~s~llI~lFg-------~~~~~nf~~NllGVil~~~-~~~~~l~~~k~~p~m 76 (165)
T PF11286_consen 26 LAILSLAFSQLLIALFG-------GESGGNFHWNLLGVILGLL-LTSALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHHHcC-------CCCCCceeeeHHHHHHHHH-HHHHHHHHHccChHH
Confidence 34444555677788999 3233334443333333333 334555588888775
No 20
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=77.86 E-value=2.5 Score=41.54 Aligned_cols=42 Identities=10% Similarity=-0.061 Sum_probs=23.8
Q ss_pred HhhcccCCCCCCC----C--CchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013287 399 GIFGMNIPCQLYE----T--DGIFEIFVGSTTTACVLLFLLVLGYARW 440 (446)
Q Consensus 399 GifGMN~~~~~e~----~--~~~f~~v~~~~~~~~~~i~~~~~~yfrr 440 (446)
-|+|||+.+.+.. | .|+||.++++++++.+++.++.++|.+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (249)
T PRK15348 200 TFWIMDVINANKGKVVKWLMKYPYQLMLSLTGLLLGVGILIGYFCLRR 247 (249)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999876553 2 3567777766654333333333333333
No 21
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=72.11 E-value=28 Score=29.46 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 013287 378 IQLQLILTIASFAIAANTLIAGIFGMNIPCQLY 410 (446)
Q Consensus 378 ~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e 410 (446)
.+-.-.++++...++.++++..+.|.=++.-+.
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~ 71 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYP 71 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334446889999999999999999988875444
No 22
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=69.04 E-value=6.2 Score=30.95 Aligned_cols=57 Identities=19% Similarity=0.048 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 382 LILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKK 442 (446)
Q Consensus 382 ~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~ 442 (446)
|+-|-++=....+++..++++.= ......+|++..+++++ ++.++..+.=+|||+|+
T Consensus 3 ki~tg~aYgtSag~~~~wl~~ll--d~~sp~qW~aIGvi~gi--~~~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 3 KITTGAAYGTSAGSAGYWLLQLL--DQFSPSQWAAIGVIGGI--FFGLLTYLTNLYFKIKE 59 (68)
T ss_pred hhhhhhccccchhhHHHHHHHHH--hccCcccchhHHHHHHH--HHHHHHHHhHhhhhhhH
Confidence 33444444444455555555531 11222344544444433 23456667888999874
No 23
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=66.49 E-value=4.9 Score=42.21 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=3.1
Q ss_pred eEEEEEc
Q 013287 64 RLWMRFD 70 (446)
Q Consensus 64 ~~W~~id 70 (446)
+.|..=+
T Consensus 332 kkW~VEn 338 (480)
T KOG2675|consen 332 KKWRVEN 338 (480)
T ss_pred ceEEEee
Confidence 3554433
No 24
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=66.28 E-value=1.4e+02 Score=29.51 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 013287 203 LEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKN------LEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDM 275 (446)
Q Consensus 203 LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~------Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm 275 (446)
+|+-|++-...++.+.++++.....+--++..+-.... -..+-.|.+.+.+.+..-..+|+-|.+|-.-++|+
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 45555555556666666666555444333322111111 11233344555555555555556666555544443
No 25
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.22 E-value=4.5 Score=45.36 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=4.3
Q ss_pred hHHHHHHhcC
Q 013287 145 FVDQLRQQLP 154 (446)
Q Consensus 145 f~~~L~~rl~ 154 (446)
++++|+++++
T Consensus 734 ~iqnLik~lP 743 (1102)
T KOG1924|consen 734 MIQNLIKHLP 743 (1102)
T ss_pred HHHHHHHhCC
Confidence 3444444443
No 26
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=64.74 E-value=27 Score=31.44 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhcccC
Q 013287 364 DYVNIQLDNQRNELIQLQLILTIASF------AIAANTLIAGIFGMNI 405 (446)
Q Consensus 364 ~~i~i~Ld~~rN~l~~~~~~LTi~s~------i~~p~t~IaGifGMN~ 405 (446)
.-+-.+||-.+-+...+.-.|||.++ ++.++-.+||+||.|=
T Consensus 52 sRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~k 99 (169)
T COG5130 52 SRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRK 99 (169)
T ss_pred HHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhh
Confidence 33344455544444455556666554 5667788999999984
No 27
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.63 E-value=13 Score=32.67 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=11.3
Q ss_pred CchHHHHHHHHHHHHHHH
Q 013287 413 DGIFEIFVGSTTTACVLL 430 (446)
Q Consensus 413 ~~~f~~v~~~~~~~~~~i 430 (446)
+.-.++++|+|+.+.++|
T Consensus 64 ~~i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGII 81 (122)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHH
Confidence 346777777776654444
No 28
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=62.44 E-value=2.9e+02 Score=31.82 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 013287 250 NLTRLLARVQKVRDEIEHLLDD 271 (446)
Q Consensus 250 ~L~~l~~~v~~vRe~L~~lL~d 271 (446)
...+|+..++.+|+.|...+.+
T Consensus 268 ~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 268 YQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555555544
No 29
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.67 E-value=2e+02 Score=28.81 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 338 LEAYFMQLDGTRNKILSVREYIDDTEDY 365 (446)
Q Consensus 338 le~Y~~~~d~~~~~i~~l~~~i~~~~~~ 365 (446)
+..||.|++---.+++.+-+.+++++.-
T Consensus 147 iQKYFvDINiQN~KLEsLLqsMElAq~g 174 (305)
T PF15290_consen 147 IQKYFVDINIQNKKLESLLQSMELAQSG 174 (305)
T ss_pred HHHHHhhhhhhHhHHHHHHHHHHHHHhc
Confidence 4779988877777778887777776543
No 30
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=58.41 E-value=17 Score=37.63 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013287 363 EDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIP 406 (446)
Q Consensus 363 ~~~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~ 406 (446)
+++....|.+.+....+--..-|++++.+-+.-...=+.||++-
T Consensus 18 ~~lfs~~LgsE~~~FV~YHikRT~~tllvHs~LPlgY~~~~~~~ 61 (358)
T PF10272_consen 18 QNLFSSWLGSEDYDFVQYHIKRTSATLLVHSCLPLGYFIGMCFF 61 (358)
T ss_pred HHHHHHhhCccccchHHHHHhHhHHHHHHHHHHHHHHHhheeEe
Confidence 33444444444333333333444444444443333346777763
No 31
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=56.75 E-value=2.4e+02 Score=30.00 Aligned_cols=32 Identities=6% Similarity=0.177 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHH
Q 013287 384 LTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFV 420 (446)
Q Consensus 384 LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~ 420 (446)
.+++-++|.....+.++||.= -++.+++..+.
T Consensus 211 ~~l~lL~~~lviC~~~l~gl~-----r~Sr~~li~~s 242 (418)
T cd07912 211 AYLGLLSLLLVICLVLLVGLA-----RHSRCLLIVFS 242 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhcchHHHHHH
Confidence 344444455555555677743 24566655553
No 32
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.28 E-value=18 Score=33.50 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 013287 383 ILTIASFAIAANTLIAGIFG 402 (446)
Q Consensus 383 ~LTi~s~i~~p~t~IaGifG 402 (446)
+++++.++++..-+++|+-|
T Consensus 6 i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 33
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=54.26 E-value=2.6 Score=35.37 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhcC
Q 013287 428 VLLFLLVLGYARWKK 442 (446)
Q Consensus 428 ~~i~~~~~~yfrrk~ 442 (446)
+++.++.|||++|||
T Consensus 81 ~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 81 GLVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHHhheeEEeec
Confidence 334445556555554
No 34
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=54.22 E-value=59 Score=29.68 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 013287 380 LQLILTIASFAIAANTLIAGIFGMNIPCQLY 410 (446)
Q Consensus 380 ~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e 410 (446)
++..||+++=+.-..-++.|+.+| |.+.+.
T Consensus 17 iD~~lT~~aW~gfi~l~~~~~~~~-~~~~~~ 46 (153)
T PRK14584 17 IDIILTALAWFGFLFLLVRGLLEM-ISRAPH 46 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccCcc
Confidence 455788888777777888899998 544333
No 35
>PRK02935 hypothetical protein; Provisional
Probab=54.19 E-value=1.1e+02 Score=26.19 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 415 IFEIFVGSTTTACVLLFLLVLGYAR 439 (446)
Q Consensus 415 ~f~~v~~~~~~~~~~i~~~~~~yfr 439 (446)
+.++....|+++.+.+......|||
T Consensus 36 ~~~~m~ifm~~G~l~~l~S~vvYFw 60 (110)
T PRK02935 36 SIIIMTIFMLLGFLAVIASTVVYFW 60 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544444445566665
No 36
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=53.58 E-value=1.6e+02 Score=31.30 Aligned_cols=71 Identities=18% Similarity=0.322 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHH---HHHHHhhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 013287 202 VLEIALEVVCTYLDSSVAELEKDAYP---VLDELARN-VSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMA 276 (446)
Q Consensus 202 ~LE~iL~~v~~~Le~~~~~Le~~~~~---vld~L~~~-v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~ 276 (446)
+-+.|-+.....++.+++.+++..+. +++.|... ... ..-.++.++..+..-=..+-..+++++..+.+++
T Consensus 136 lC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~----~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~ 210 (447)
T KOG2751|consen 136 LCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV----SEEDLLKELKNLKEEEERLLQQLEELEKEEAELD 210 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777666532 44554432 111 1222333334444444445556666666666654
No 37
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=52.96 E-value=1.9e+02 Score=26.67 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013287 245 RSLKSNLTRLLARVQKVRDEIEH 267 (446)
Q Consensus 245 r~lK~~L~~l~~~v~~vRe~L~~ 267 (446)
..++.+...+++.+..++..|.+
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544443
No 38
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=52.75 E-value=34 Score=27.37 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHhcCc
Q 013287 373 QRNELIQLQLILTIASFAIAANTL---IAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFL-LVLGYARWKKL 443 (446)
Q Consensus 373 ~rN~l~~~~~~LTi~s~i~~p~t~---IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~-~~~~yfrrk~w 443 (446)
.|+++.+.++.+-+.-++.+...+ +++.++.|-+ . .....||..++..+..|.-.++ .+++.+++|.|
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~--~-~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYE--I-GHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-CCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 366777777777776666655544 4555555522 1 2222344443333333332333 45566677766
No 39
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=51.17 E-value=15 Score=41.68 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=23.4
Q ss_pred CCchHH-HHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 412 TDGIFE-IFVGSTTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 412 ~~~~f~-~v~~~~~~~~~~i~~~~~~yfrrk~w 443 (446)
.+..|. .++|+|+++.+++.+++++|||||.|
T Consensus 270 YHT~fLl~ILG~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 270 YHTVFLLAILGGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 344564 34666777777777789999999987
No 40
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=50.79 E-value=11 Score=32.56 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 013287 382 LILTIASFAIAANTLIAGIF 401 (446)
Q Consensus 382 ~~LTi~s~i~~p~t~IaGif 401 (446)
+++.++|.++...|+|.|++
T Consensus 32 liiG~vT~l~VLvtii~afv 51 (118)
T PF10856_consen 32 LIIGAVTSLFVLVTIISAFV 51 (118)
T ss_pred eehHHHHHHHHHHHHhheEE
Confidence 46777888888888877765
No 41
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=50.66 E-value=15 Score=41.50 Aligned_cols=12 Identities=8% Similarity=0.229 Sum_probs=6.5
Q ss_pred hhHHHHHHhcCC
Q 013287 144 PFVDQLRQQLPQ 155 (446)
Q Consensus 144 ~f~~~L~~rl~~ 155 (446)
++|..|+-.+..
T Consensus 657 dlfakL~~~Fat 668 (1102)
T KOG1924|consen 657 DLFAKLALKFAT 668 (1102)
T ss_pred HHHHHHHHHhhc
Confidence 455565555543
No 42
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=50.31 E-value=44 Score=31.64 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=6.3
Q ss_pred HHHHHHHHhc
Q 013287 432 LLVLGYARWK 441 (446)
Q Consensus 432 ~~~~~yfrrk 441 (446)
.+..+|+|||
T Consensus 191 ~~~~~~lkkk 200 (206)
T PF06570_consen 191 FALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHH
Confidence 4556777765
No 43
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=50.20 E-value=80 Score=29.53 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=30.8
Q ss_pred HHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 210 VCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLD 270 (446)
Q Consensus 210 v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~ 270 (446)
.+..+|.++.+||..+.+..|.+.. .++.-..+|++++.++.++..+-+.+.++|+
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~~-----q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELEA-----QQEQAPALKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhCchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666776666665555541 2334445555556565555555555555544
No 44
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=49.62 E-value=1.1e+02 Score=25.29 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 361 DTEDYVNIQLDNQRNELIQLQLILT 385 (446)
Q Consensus 361 ~~~~~i~i~Ld~~rN~l~~~~~~LT 385 (446)
+.++...-|.+.+||..|+..=.+.
T Consensus 3 ~~~~~~~~Y~~~H~~~~n~~lH~ig 27 (95)
T PF06127_consen 3 SLEEFFAFYLSYHRNPINRALHFIG 27 (95)
T ss_pred CHHHHHHHHHHHcCCHhhHHHHHHH
Confidence 4567777888889999888543333
No 45
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=49.45 E-value=42 Score=30.46 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=44.2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 364 DYVNIQLDN-QRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWK 441 (446)
Q Consensus 364 ~~i~i~Ld~-~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk 441 (446)
.+++++-.+ ...+..++.+.-+++|+.++..+++.|++=++... +..+-..|||+..+..-...+++.+.+.+-++|
T Consensus 48 ~li~Ly~~~ty~k~~~k~l~kt~~iSF~~avLGiifgI~~qll~~-WslsiM~wYWll~LlLyl~tiisLViLVf~n~k 125 (161)
T PF13042_consen 48 ILIDLYCKNTYDKKFSKVLIKTNVISFNFAVLGIIFGIIHQLLGK-WSLSIMMWYWLLILLLYLITIISLVILVFVNRK 125 (161)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 344443322 24566677778999999999999999999887652 112222333332222222233444555555554
No 46
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.04 E-value=81 Score=26.73 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=25.2
Q ss_pred hHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 216 SSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHL 268 (446)
Q Consensus 216 ~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~l 268 (446)
+.+...+.++..++.++..-++.+.+.. |+-++.+++..+..++..|+.+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~---L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHD---LQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHH---HHHHHHHHHhHHHHHHHHHHHH
Confidence 3334445565666666665565554444 4444455554444444444433
No 47
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=48.86 E-value=1.9e+02 Score=25.41 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcccC
Q 013287 337 LLEAYFMQLDGTRNKILSVREYIDDTE--D----YVNIQLDNQRNELIQLQLILTIASFAIAANTL----IAGIFGMNI 405 (446)
Q Consensus 337 Lle~Y~~~~d~~~~~i~~l~~~i~~~~--~----~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~----IaGifGMN~ 405 (446)
++-.|-.++..+..++..+.+..+... + ..++..=..|-++++-...+.+.|+++...+. +.+++++|+
T Consensus 15 ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~ 93 (130)
T PF11026_consen 15 LLLVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDL 93 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 445555565555555555554443211 1 22333333466666666666666666555544 445555554
No 48
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=48.70 E-value=64 Score=33.71 Aligned_cols=58 Identities=17% Similarity=-0.003 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hcccCCCCCCCCCchHHHHH---HHHHHHHHHHHHHHHHHHHhcCc
Q 013287 381 QLILTIASFAIAANTLIAGI---FGMNIPCQLYETDGIFEIFV---GSTTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 381 ~~~LTi~s~i~~p~t~IaGi---fGMN~~~~~e~~~~~f~~v~---~~~~~~~~~i~~~~~~yfrrk~w 443 (446)
...+.++.+....--++.|+ .|||= +.+||+|++. ..+.++++...+..+.|.-++++
T Consensus 22 ~~~l~~~g~~~~~~~~~~Glg~vtg~~~-----~~~WGl~I~~y~~~~vglaag~~~is~~~~vf~~~~ 85 (394)
T PRK10881 22 LGPLIVICMLLIVKRFVFGLGSVSNLNG-----GYPWGIWIAFDVLIGTGFACGGWALAWLVYVFNRGQ 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhcCCCC-----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 33444555555555566654 66664 4457776653 12223344444455555333444
No 49
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=48.68 E-value=98 Score=23.97 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013287 381 QLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL 444 (446)
Q Consensus 381 ~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl 444 (446)
+|.+-++.++++..++-.|+|-|-=+-+ ...+...+..+=+.. ++ +.++++.+..+-+|+
T Consensus 1 ~Ki~iv~lll~ii~sL~saL~~l~kd~~-~~~rm~~~L~~RV~l--S~-~l~~lil~~~~~G~i 60 (63)
T PF11137_consen 1 MKILIVLLLLAIIASLFSALFFLVKDKG-SSKRMVKALGRRVGL--SA-LLFLLILIALYTGWI 60 (63)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHH--HH-HHHHHHHHHHHhCCC
Confidence 4678888999999999999999976533 444444444432222 22 223455666677777
No 50
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=46.17 E-value=2.2e+02 Score=25.42 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHhhH
Q 013287 212 TYLDSSVAELEKDA 225 (446)
Q Consensus 212 ~~Le~~~~~Le~~~ 225 (446)
..+...+..++..+
T Consensus 8 ~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 8 DSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 51
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.02 E-value=2.7e+02 Score=26.25 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-Cchhhhhhhcchhh
Q 013287 244 VRSLKSNLTRLLARVQKVRDEIEHLLD-DNEDMAHLYLTRRR 284 (446)
Q Consensus 244 lr~lK~~L~~l~~~v~~vRe~L~~lL~-dd~dm~~m~Lt~~~ 284 (446)
-..+++++....+.+....+....-|+ .++|++.-+|.++.
T Consensus 53 ~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~ 94 (221)
T PF04012_consen 53 QKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKA 94 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667777777777766665555554 57788888888764
No 52
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=44.80 E-value=1.4e+02 Score=25.81 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 415 IFEIFVGSTTTACVLLFLLVLGYAR 439 (446)
Q Consensus 415 ~f~~v~~~~~~~~~~i~~~~~~yfr 439 (446)
+.|+.+..|+++.+++......|||
T Consensus 35 ~~~im~ifmllG~L~~l~S~~VYfw 59 (114)
T PF11023_consen 35 SPIIMVIFMLLGLLAILASTAVYFW 59 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444455666665
No 53
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=44.51 E-value=2.2e+02 Score=24.96 Aligned_cols=8 Identities=13% Similarity=0.248 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 013287 433 LVLGYARW 440 (446)
Q Consensus 433 ~~~~yfrr 440 (446)
.++.++++
T Consensus 118 ~~~~~l~~ 125 (139)
T PF01618_consen 118 PFYNYLKR 125 (139)
T ss_pred HHHHHHHH
Confidence 34444443
No 54
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=44.48 E-value=31 Score=28.61 Aligned_cols=27 Identities=11% Similarity=-0.140 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013287 380 LQLILTIASFAIAANTLIAGIFGMNIP 406 (446)
Q Consensus 380 ~~~~LTi~s~i~~p~t~IaGifGMN~~ 406 (446)
.+++|++++.++.....+.+++...+.
T Consensus 4 ~E~iL~~Ig~il~il~~~~~l~~~~~~ 30 (100)
T PF13273_consen 4 AEKILGWIGGILGILFGFFGLLIGFFG 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888887776655555544443
No 55
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=44.40 E-value=4e+02 Score=31.53 Aligned_cols=67 Identities=28% Similarity=0.457 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchh
Q 013287 204 EIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRR 283 (446)
Q Consensus 204 E~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~ 283 (446)
+..|.+-|..++.+++.|+... .. ..+.++.++.+|..++..+.++|..+.+++++-.- +.+|..+-
T Consensus 172 ~~hL~velAdle~kir~LrqEl-------EE-----K~enll~lr~eLddleae~~klrqe~~e~l~ea~r-a~~yrdel 238 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQEL-------EE-----KFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHR-ADRYRDEL 238 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHH
Confidence 3446666666666666555443 22 24778889999999999999999999999987544 35565543
No 56
>COG5487 Small integral membrane protein [Function unknown]
Probab=43.50 E-value=1.2e+02 Score=22.57 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhcc
Q 013287 387 ASFAIAANTLIAGIFGM 403 (446)
Q Consensus 387 ~s~i~~p~t~IaGifGM 403 (446)
++.+|.+.++|+|.+|.
T Consensus 4 waliFlvialIa~~lGF 20 (54)
T COG5487 4 WALIFLVIALIAGALGF 20 (54)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 67889999999999994
No 57
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=43.41 E-value=32 Score=30.27 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 413 DGIFEIFVGSTTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 413 ~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~w 443 (446)
.+.|++++.+|.+.++.++.+|+.|.|-||.
T Consensus 41 ~~~~lYIL~vmgfFgff~~gImlsyvRSKK~ 71 (129)
T PF02060_consen 41 DNEYLYILVVMGFFGFFTVGIMLSYVRSKKR 71 (129)
T ss_dssp SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456777777777777788889999998864
No 58
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=43.33 E-value=79 Score=28.10 Aligned_cols=27 Identities=7% Similarity=-0.172 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 415 IFEIFVGSTTTACVLLFLLVLGYARWK 441 (446)
Q Consensus 415 ~f~~v~~~~~~~~~~i~~~~~~yfrrk 441 (446)
|.|.+.+.+.+-.++++.++..++|+.
T Consensus 34 GaW~Vl~F~glev~~l~~a~~~~~r~~ 60 (140)
T PF10003_consen 34 GAWPVLPFAGLEVLALWYAFRRNYRHA 60 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456666665555556666777777654
No 59
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=43.13 E-value=1.2e+02 Score=25.26 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=2.7
Q ss_pred HHhhcc
Q 013287 398 AGIFGM 403 (446)
Q Consensus 398 aGifGM 403 (446)
+++++.
T Consensus 39 ~~~~~~ 44 (112)
T PF14015_consen 39 ASLSGL 44 (112)
T ss_pred HHHhhc
Confidence 344444
No 60
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=43.00 E-value=18 Score=42.64 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=8.5
Q ss_pred HhCCChhhhhhhCC
Q 013287 88 RAGVPARDLRILGP 101 (446)
Q Consensus 88 ~~~L~~RDLr~Ld~ 101 (446)
...++|.-||++-.
T Consensus 81 ka~~PpeHLrki~~ 94 (2365)
T COG5178 81 KAPIPPEHLRKIQS 94 (2365)
T ss_pred CCCCCHHHHHhhhC
Confidence 34567777776443
No 61
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=42.90 E-value=6.8e+02 Score=30.19 Aligned_cols=6 Identities=33% Similarity=1.359 Sum_probs=4.3
Q ss_pred HHHhhc
Q 013287 397 IAGIFG 402 (446)
Q Consensus 397 IaGifG 402 (446)
+.|+||
T Consensus 514 ~~Gv~G 519 (1163)
T COG1196 514 LPGVYG 519 (1163)
T ss_pred CCCccc
Confidence 667777
No 62
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=42.74 E-value=2.1e+02 Score=26.02 Aligned_cols=32 Identities=16% Similarity=0.443 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 241 LEHVRSLKSNLTRLLARVQKVRDEIEHLLDDN 272 (446)
Q Consensus 241 Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd 272 (446)
+..|..+...+..+..+...++++=++++.+.
T Consensus 27 ~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq 58 (157)
T PF04136_consen 27 LDQLDELQEQYNSVSEKTNSLHEACEQLLEEQ 58 (157)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555543
No 63
>COG3462 Predicted membrane protein [Function unknown]
Probab=42.60 E-value=1.8e+02 Score=25.14 Aligned_cols=13 Identities=0% Similarity=-0.465 Sum_probs=5.7
Q ss_pred CchHHHHHHHHHH
Q 013287 413 DGIFEIFVGSTTT 425 (446)
Q Consensus 413 ~~~f~~v~~~~~~ 425 (446)
-||.|.+.-++.+
T Consensus 46 ~yGm~lImpI~~~ 58 (117)
T COG3462 46 LYGMWLIMPIFWA 58 (117)
T ss_pred hhhhHHHHHHHHH
Confidence 3454554443433
No 64
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=41.11 E-value=1.9e+02 Score=23.37 Aligned_cols=38 Identities=11% Similarity=-0.078 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCC-----CCCCCchHHHHH
Q 013287 383 ILTIASFAIAANTLIAGIFGMNIPCQ-----LYETDGIFEIFV 420 (446)
Q Consensus 383 ~LTi~s~i~~p~t~IaGifGMN~~~~-----~e~~~~~f~~v~ 420 (446)
..|++.+++-..--..+.||..-..+ .-.-|-+|+..+
T Consensus 8 ~~tl~l~l~yf~~W~~~ay~~~~~~~~~y~~i~GlPlWF~~SC 50 (80)
T PF06196_consen 8 RWTLGLTLIYFAWWYGFAYGLGNGDGEEYKYIFGLPLWFFYSC 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCccccccccCCcHHHHHHH
Confidence 45566666666666777888875544 224455555443
No 65
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=40.90 E-value=2e+02 Score=23.43 Aligned_cols=66 Identities=23% Similarity=0.203 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 013287 205 IALEVVCTYLDSSVAELEKDAYPVLDELARNVST-KNLEHVRSLKSNLTRLLA----RVQKVRDEIEHLLD 270 (446)
Q Consensus 205 ~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~-~~Le~lr~lK~~L~~l~~----~v~~vRe~L~~lL~ 270 (446)
..|+.+...++..+.++.+++..+++++..+++. ..|-.+..+-.+++-++. .+..++|....+++
T Consensus 7 g~l~~v~~~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNaQSn~iKa~KD~~~aIIq 77 (80)
T PRK15326 7 GYLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSNTVKVFKDIDAAIIQ 77 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888999999999999999999877665 346777777777766554 34455665555554
No 66
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=40.40 E-value=26 Score=28.07 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 381 QLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWK 441 (446)
Q Consensus 381 ~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk 441 (446)
++.++.+-.++++.+||.|++=-|+.+ .++.+.++.+ +++++++=-|-+++|.
T Consensus 10 e~l~~~il~~~~iisfi~Gy~~q~~~~-------~~~~~~~g~~-~~~lv~vP~Wp~y~r~ 62 (76)
T PF06645_consen 10 EKLMQYILIISAIISFIVGYITQSFSY-------TFYIYGAGVV-LTLLVVVPPWPFYNRH 62 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHhheeCCcHhhcCC
Confidence 446667777778888899988766653 4555544443 3333444455555554
No 67
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=39.19 E-value=94 Score=27.86 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=6.9
Q ss_pred HHHHHHHhcCcc
Q 013287 433 LVLGYARWKKLL 444 (446)
Q Consensus 433 ~~~~yfrrk~wl 444 (446)
+.+.+||||+-+
T Consensus 73 ~~~lffkr~~~~ 84 (149)
T PF10754_consen 73 LLYLFFKRKRRF 84 (149)
T ss_pred HHHHHHHccchh
Confidence 345567776643
No 68
>PTZ00370 STEVOR; Provisional
Probab=38.07 E-value=52 Score=33.04 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCchh-hh--hhhcc
Q 013287 260 KVRDEIEHLLDDNED-MA--HLYLT 281 (446)
Q Consensus 260 ~vRe~L~~lL~dd~d-m~--~m~Lt 281 (446)
.+-+.++++..|+.+ |. .||..
T Consensus 110 el~e~~ee~fg~~~~imlksg~~~n 134 (296)
T PTZ00370 110 ELLETYEEMFGDESDIMLKSGMYPN 134 (296)
T ss_pred HHHHHHHHHhcCccchhhhcCCCCC
Confidence 355778888999888 42 44443
No 69
>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=37.87 E-value=1.6e+02 Score=28.48 Aligned_cols=75 Identities=23% Similarity=0.382 Sum_probs=46.5
Q ss_pred CcccccchHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 191 GFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLD 270 (446)
Q Consensus 191 ~~~~~LPfEf~~LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~ 270 (446)
..+.-|||...++|.+++.+-..-| .+|..+.. .++...+..-.|+|++.+-+.+ ++-|++++-.-..++|+
T Consensus 40 ~APeLLp~~~elve~~ldqIe~~eE----~i~~~a~~--~dlr~~~~qmELERvkfvlrSY--lRcRL~KIekf~~~~ln 111 (223)
T KOG3176|consen 40 CAPELLPYALELVERLLDQIEHMEE----TIERKASN--KDLRVSLHQMELERVKFVLRSY--LRCRLQKIEKFLQHILN 111 (223)
T ss_pred cChhhcCChHHHHHHHHHHHHHHHH----HHHHhccc--ccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhc
Confidence 3467899999998888875443322 23222111 1122233344688888777766 66778888777777877
Q ss_pred Cch
Q 013287 271 DNE 273 (446)
Q Consensus 271 dd~ 273 (446)
.++
T Consensus 112 ~ee 114 (223)
T KOG3176|consen 112 QEE 114 (223)
T ss_pred chh
Confidence 765
No 70
>PRK11020 hypothetical protein; Provisional
Probab=37.29 E-value=1.7e+02 Score=25.31 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=47.6
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhhcchhhhhhhhh
Q 013287 217 SVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNE-DMAHLYLTRRRIQNQQA 290 (446)
Q Consensus 217 ~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~-dm~~m~Lt~~~~~~~~~ 290 (446)
++..|.+.++.+-..+..-.....-+-+-.++++...+...|..++..=..-|..+. ++.+|.+++..++.+|.
T Consensus 6 Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK~EQA 80 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITKKEQA 80 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccHHHHH
Confidence 344444444333333332233344567777888999999999999888777776544 67888888877665553
No 71
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=37.27 E-value=3.6e+02 Score=25.46 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 013287 339 EAYFMQLDGTRNKILSVR-EYIDDTED--------YVNIQLDNQRNELIQLQLILT 385 (446)
Q Consensus 339 e~Y~~~~d~~~~~i~~l~-~~i~~~~~--------~i~i~Ld~~rN~l~~~~~~LT 385 (446)
+.++..+|+++..+.++- ..+|..++ -++++..+..|+.-.+++..+
T Consensus 32 ~s~l~~fddii~kL~eLfKKLRDvl~~YnqkqQ~l~w~iQv~amdtkreaIdka~~ 87 (195)
T PRK15361 32 ESMLLLFDDIWMKLMELAKKLRDIMRSYNVEKQRLSWELQVNVLQTQMKTIDEAFR 87 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444544555544444442 22333333 366788888888888888765
No 72
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=36.86 E-value=1.7e+02 Score=24.76 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013287 381 QLILTIASFAIAANTLIAGI 400 (446)
Q Consensus 381 ~~~LTi~s~i~~p~t~IaGi 400 (446)
..++.+++.++...+++.++
T Consensus 44 a~vl~~~~l~~l~~al~~~l 63 (121)
T PF07332_consen 44 AAVLALLALLFLLVALVFAL 63 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444
No 73
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.45 E-value=3e+02 Score=24.27 Aligned_cols=23 Identities=4% Similarity=0.146 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhh
Q 013287 202 VLEIALEVVCTYLDSSVAELEKD 224 (446)
Q Consensus 202 ~LE~iL~~v~~~Le~~~~~Le~~ 224 (446)
|..--+..+|..+...++.+-+.
T Consensus 36 vTrr~m~~A~~~v~kql~~vs~~ 58 (126)
T PF07889_consen 36 VTRRSMSDAVASVSKQLEQVSES 58 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555555666555555444333
No 74
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.93 E-value=60 Score=32.55 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCchh
Q 013287 261 VRDEIEHLLDDNED 274 (446)
Q Consensus 261 vRe~L~~lL~dd~d 274 (446)
+-+.++++..|+.+
T Consensus 112 l~e~~~~~fg~e~~ 125 (295)
T TIGR01478 112 LLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHhCCccc
Confidence 44677778888888
No 75
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.92 E-value=1e+02 Score=26.44 Aligned_cols=34 Identities=18% Similarity=0.049 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCC--CCCchHHHH
Q 013287 386 IASFAIAANTLIAGIFGMNIPCQLY--ETDGIFEIF 419 (446)
Q Consensus 386 i~s~i~~p~t~IaGifGMN~~~~~e--~~~~~f~~v 419 (446)
.++++++-..+++++.+.|.-.++. -.||.|...
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilL 38 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFILL 38 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHH
Confidence 3678888899999999999975553 355665444
No 76
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=34.99 E-value=2.7e+02 Score=24.10 Aligned_cols=14 Identities=21% Similarity=-0.197 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhcCc
Q 013287 430 LFLLVLGYARWKKL 443 (446)
Q Consensus 430 i~~~~~~yfrrk~w 443 (446)
+...+-..+||++|
T Consensus 96 ~~~~l~~~~~k~g~ 109 (135)
T PF01769_consen 96 LGYLLPIILWKIGL 109 (135)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCC
Confidence 34455566777775
No 77
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=34.85 E-value=2.5e+02 Score=22.94 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=14.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 411 ETDGIFEIFVGSTTTACVLLFLLVLGYARWKK 442 (446)
Q Consensus 411 ~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~ 442 (446)
..++|++..++..++ .+++.++|.++-+
T Consensus 51 ~~t~g~~~g~~~~~~----~~~l~~~Yv~~An 78 (91)
T PF04341_consen 51 SLTLGIVLGLGQIVF----AWVLTWLYVRRAN 78 (91)
T ss_pred CcCHHHHHHHHHHHH----HHHHHHHHHHHHc
Confidence 455666655554432 3345666666543
No 78
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=34.81 E-value=1.6e+02 Score=24.50 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC
Q 013287 382 LILTIASFAIAANTLIAGIFGMNIPC 407 (446)
Q Consensus 382 ~~LTi~s~i~~p~t~IaGifGMN~~~ 407 (446)
..+.++.+++++++.++|+.=+..-.
T Consensus 6 ~wll~~G~l~~~~A~~~G~~d~~~~~ 31 (104)
T PF09990_consen 6 FWLLVLGLLGAIVAVLTGFVDLLTVE 31 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45778888899999999999887763
No 79
>PRK10189 MATE family multidrug exporter; Provisional
Probab=34.12 E-value=1e+02 Score=32.82 Aligned_cols=47 Identities=11% Similarity=-0.246 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccC
Q 013287 389 FAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLLG 445 (446)
Q Consensus 389 ~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl~ 445 (446)
++..|.+++.+++- .++...+|.++.+..++.+++++++||+.+|..
T Consensus 420 ~v~ip~~~ll~~~~----------~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 420 GCRVVAGYILGIML----------GFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 34456666665541 123344444444444556667889999999954
No 80
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.04 E-value=5.9e+02 Score=26.91 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013287 247 LKSNLTRLLARVQKVRDEIEHL 268 (446)
Q Consensus 247 lK~~L~~l~~~v~~vRe~L~~l 268 (446)
+...|.+-+-+...+-+.++++
T Consensus 249 ~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 249 ILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 81
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=33.67 E-value=59 Score=21.18 Aligned_cols=10 Identities=30% Similarity=-0.037 Sum_probs=5.0
Q ss_pred HHHHHHHhcC
Q 013287 433 LVLGYARWKK 442 (446)
Q Consensus 433 ~~~~yfrrk~ 442 (446)
+.+++.|||+
T Consensus 24 ~~~~~~~rk~ 33 (34)
T TIGR01167 24 GGLLLRKRKK 33 (34)
T ss_pred HHHHheeccc
Confidence 4455555543
No 82
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.28 E-value=2.1e+02 Score=26.95 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=5.0
Q ss_pred HHHHHHHHHhhc
Q 013287 391 IAANTLIAGIFG 402 (446)
Q Consensus 391 ~~p~t~IaGifG 402 (446)
++..+++.|+.+
T Consensus 90 ~~if~~~~gi~~ 101 (206)
T PF06570_consen 90 FGIFSLLFGIMG 101 (206)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 83
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=33.05 E-value=89 Score=21.78 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=4.8
Q ss_pred HHHHHHHhcC
Q 013287 433 LVLGYARWKK 442 (446)
Q Consensus 433 ~~~~yfrrk~ 442 (446)
.+++.+.+||
T Consensus 23 ~~~YaCcykk 32 (38)
T PF02439_consen 23 MFYYACCYKK 32 (38)
T ss_pred HHHHHHHHcc
Confidence 3444455554
No 84
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=33.04 E-value=34 Score=34.43 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=25.0
Q ss_pred hcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 401 FGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKK 442 (446)
Q Consensus 401 fGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~ 442 (446)
||=-.+....+....-.+++|+.+++.++|+++.+++.|||.
T Consensus 258 Fg~a~~C~~D~~~~~vPIaVG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 258 FGTAEECSSDDTSDLVPIAVGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred CCChhcCCcCCccchHHHHHHHHHHHHHHHHHHhheeEeccc
Confidence 775555554443555566677776666666555555556553
No 85
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.99 E-value=1.3e+02 Score=29.22 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=8.5
Q ss_pred CchHHHHHHHHHH
Q 013287 413 DGIFEIFVGSTTT 425 (446)
Q Consensus 413 ~~~f~~v~~~~~~ 425 (446)
++.||+++|+++.
T Consensus 51 ~~~~~~i~gi~~g 63 (224)
T PF13829_consen 51 SWWYWLIIGILLG 63 (224)
T ss_pred cHHHHHHHHHHHH
Confidence 4577777776654
No 86
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=32.79 E-value=2.5e+02 Score=26.16 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHHHHHhhhhhHHHHHHhhHH
Q 013287 196 LPFEFQVLEIALEVVCTYLDSSVAELEKDAY 226 (446)
Q Consensus 196 LPfEf~~LE~iL~~v~~~Le~~~~~Le~~~~ 226 (446)
|-.-|.=|...++.+-..|+.++++|+..+.
T Consensus 107 L~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~ 137 (171)
T PF04799_consen 107 LSSTFARLCQQVDQTKNELEDEIKQLEKEIQ 137 (171)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577788888888888887777776654
No 87
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=32.63 E-value=40 Score=38.06 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchH
Q 013287 346 DGTRNKILSVREYIDDTEDYVNI---------QLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIF 416 (446)
Q Consensus 346 d~~~~~i~~l~~~i~~~~~~i~i---------~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f 416 (446)
|.....+.++..-.+.++-..+. .+++..-.|-++.+-+-.....|.+.+ =+||=|=+. ..+..|
T Consensus 642 esV~~Dv~eL~~g~~l~~kE~e~~~~~~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~---~y~Gespk~---tppt~f 715 (830)
T KOG1923|consen 642 ESVLADVKELNAGMTLAEKETEREGLDVILSEFLDNNKPKMKKLRKDFKDAAEAFEDVV---EYFGESPKT---TPPTVF 715 (830)
T ss_pred hccchhHHHHHhHHHHHHHHHhhhccchHHHHHHhcccHHHHHHHHHHHHHHHHHHhHh---HhhCCCCCC---CCCCcc
Confidence 34444455555555555544443 334445566666677777777777766 567755433 345566
Q ss_pred HHH
Q 013287 417 EIF 419 (446)
Q Consensus 417 ~~v 419 (446)
+-.
T Consensus 716 f~~ 718 (830)
T KOG1923|consen 716 FQL 718 (830)
T ss_pred HHH
Confidence 554
No 88
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=32.50 E-value=75 Score=29.78 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 013287 384 LTIASFAIAANTLIAGIFGMN 404 (446)
Q Consensus 384 LTi~s~i~~p~t~IaGifGMN 404 (446)
-+++++.++..++++++||.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 10 RWILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 356777777788888888855
No 89
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=32.26 E-value=1.5e+02 Score=27.91 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 380 LQLILTIASFAIAANTLIAGIFGMNIPCQLY--ETDGIFEIFVGSTTTACVLLFLLVLGYARWK 441 (446)
Q Consensus 380 ~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e--~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk 441 (446)
+..+|++++.+....++ +++=+..++-. ....++|+.+++.++ +++.++|-||..
T Consensus 24 ~QlvLgvVs~~iL~F~~---~~~~~~~~~~~~~G~~~gl~~a~~gl~~----l~~si~~~fry~ 80 (183)
T PF12263_consen 24 IQLVLGVVSAVILLFAN---LFSGRATSPNRNPGLGIGLFLAICGLVA----LFFSIFWSFRYT 80 (183)
T ss_pred HHHHHHHHHHHHHHHHh---hccccCCCCCcCCCcchHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45678888877766654 23434433332 234455555443333 223455555543
No 90
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.14 E-value=4.5e+02 Score=25.00 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 241 LEHVRSLKSNLTRLLARVQKVRDEIEH 267 (446)
Q Consensus 241 Le~lr~lK~~L~~l~~~v~~vRe~L~~ 267 (446)
.|.++ ||++|..|...+.++.++.+.
T Consensus 96 wEevr-LkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 96 WEEVR-LKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 34433 777777777777777766665
No 91
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=31.86 E-value=5.1e+02 Score=25.53 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHH---HHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 199 EFQVLEIALEVVCTYLDSSVAELEKDAYPVLD---ELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDD 271 (446)
Q Consensus 199 Ef~~LE~iL~~v~~~Le~~~~~Le~~~~~vld---~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~d 271 (446)
-|..||.++......|+.+-+..+..+.++=+ .|.+ +=+.|..|-++.+.++..-+++-..|+-++..
T Consensus 72 ~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~-----ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sq 142 (254)
T KOG2196|consen 72 TYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIE-----NGEKISGLYNEVVKVKLDQKRLDQELEFILSQ 142 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34788888888888888776666655543321 1111 12345555555555555555554444444433
No 92
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=31.79 E-value=4.5e+02 Score=25.39 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 370 LDNQRNELIQLQLILTIASFAIAANTL 396 (446)
Q Consensus 370 Ld~~rN~l~~~~~~LTi~s~i~~p~t~ 396 (446)
++..+-.+-++.-.+|+.++.+...++
T Consensus 31 ~~~~qs~l~~~~~r~tv~slAl~~l~~ 57 (251)
T COG5415 31 LKKSQSILSQWQSRLTVYSLALTVLAL 57 (251)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444555555567777777666654
No 93
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=31.49 E-value=53 Score=27.73 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013287 344 QLDGTRNKILSVREYIDDTEDY 365 (446)
Q Consensus 344 ~~d~~~~~i~~l~~~i~~~~~~ 365 (446)
++|-+..+++.++++.|+.+..
T Consensus 32 dv~pi~Eqi~kLe~~vddl~~s 53 (108)
T COG4062 32 DVDPIEEQIKKLETLVDDLENS 53 (108)
T ss_pred eccHHHHHHHHHHHHHHHHHhc
Confidence 4566666777777766665543
No 94
>PHA03231 glycoprotein BALF4; Provisional
Probab=30.87 E-value=2.2e+02 Score=32.94 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=12.7
Q ss_pred cceeeEEe-cCeEEeeCCCCCCc
Q 013287 121 EFIKAIVT-SQEVLLLDPLRQEV 142 (446)
Q Consensus 121 e~IraII~-~d~vl~f~~~~~~~ 142 (446)
+.+..-.+ .+.++.+||.-+..
T Consensus 361 G~vqyy~t~GGl~i~wQpl~~~~ 383 (829)
T PHA03231 361 GDVQYYLTTGGLLLAWQPLLSKS 383 (829)
T ss_pred CceEEEEecCcEEEEEccCCcch
Confidence 34444444 45566678886654
No 95
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=30.85 E-value=2.8e+02 Score=23.98 Aligned_cols=11 Identities=18% Similarity=0.150 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 013287 383 ILTIASFAIAA 393 (446)
Q Consensus 383 ~LTi~s~i~~p 393 (446)
.|.++.++++.
T Consensus 49 ~Lli~G~~li~ 59 (115)
T PF05915_consen 49 FLLIFGTVLII 59 (115)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 96
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.74 E-value=4.8e+02 Score=31.56 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=28.9
Q ss_pred hhhHHHHHHhhHHHHHHHHhh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 214 LDSSVAELEKDAYPVLDELAR-NVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDD 271 (446)
Q Consensus 214 Le~~~~~Le~~~~~vld~L~~-~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~d 271 (446)
++..+.++|+.+..+-+-|.. ++ ..+.+..+-..+..|++.++.+++.|..+-.+
T Consensus 1199 y~s~f~~me~kl~~ir~il~~~sv---s~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~ 1254 (1758)
T KOG0994|consen 1199 YASRFLDMEEKLEEIRAILSAPSV---SAEDIAQLASATESLRRQLQALTEDLPQEEET 1254 (1758)
T ss_pred hHhHHHHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 334444444444443333311 22 23445556666777777777777776655444
No 97
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=30.47 E-value=4e+02 Score=24.82 Aligned_cols=61 Identities=20% Similarity=0.365 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 201 QVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLD 270 (446)
Q Consensus 201 ~~LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~ 270 (446)
+=|+..+...|...+.-..+|++++..+.++ ++++..+.+++..|+.++.-+...|+..-+
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~---------i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKE---------IQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777777776555443 345555666666677777766666665544
No 98
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.31 E-value=58 Score=25.77 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhhc
Q 013287 390 AIAANTLIAGIFG 402 (446)
Q Consensus 390 i~~p~t~IaGifG 402 (446)
++++.++++|++|
T Consensus 8 l~ivl~ll~G~~~ 20 (71)
T COG3763 8 LLIVLALLAGLIG 20 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 99
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=30.19 E-value=76 Score=22.63 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=5.6
Q ss_pred HHHHHHHHhcCc
Q 013287 432 LLVLGYARWKKL 443 (446)
Q Consensus 432 ~~~~~yfrrk~w 443 (446)
.+.+.+.++|++
T Consensus 22 li~~~~~~~r~~ 33 (45)
T TIGR03141 22 LILWSLLDRRRL 33 (45)
T ss_pred HHHHHHHHHHHH
Confidence 344444555543
No 100
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=29.91 E-value=1.8e+02 Score=28.21 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013287 375 NELIQLQLILTIASFAIAANTLIAGIFG 402 (446)
Q Consensus 375 N~l~~~~~~LTi~s~i~~p~t~IaGifG 402 (446)
+++.+..+.+.+.+++=+..+++.|.++
T Consensus 6 ~~~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 6 KRILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333344444444
No 101
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=29.28 E-value=3.8e+02 Score=27.52 Aligned_cols=52 Identities=10% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 220 ELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDD 271 (446)
Q Consensus 220 ~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~d 271 (446)
++......+.++..+..+-..-..|..+-++|.+|+++++.++..|+++...
T Consensus 267 ~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 267 RLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4444445555555554333333455557778888889998888888877543
No 102
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=28.89 E-value=1.1e+02 Score=27.98 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCchhhh
Q 013287 241 LEHVRSLKSNLTRLLARV---QKVRDEIEHLLDDNEDMA 276 (446)
Q Consensus 241 Le~lr~lK~~L~~l~~~v---~~vRe~L~~lL~dd~dm~ 276 (446)
|.+|..++++|..|+..+ ..+|+.|++++.|++.+.
T Consensus 111 L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~ 149 (157)
T PF05591_consen 111 LRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALE 149 (157)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHH
Confidence 566677777777777765 579999999999987764
No 103
>COG4244 Predicted membrane protein [Function unknown]
Probab=28.84 E-value=3.2e+02 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 013287 377 LIQLQLILTIASFAIAANTLIAGIFGMNIPCQ 408 (446)
Q Consensus 377 l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~ 408 (446)
-.+.-..+...+++++..++++|+|++=+--+
T Consensus 47 ~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~ 78 (160)
T COG4244 47 WFDVSWWNLFAALIAGFFAVIAGLFEFLLARP 78 (160)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45556678889999999999999999877654
No 104
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=28.83 E-value=9.1e+02 Score=27.46 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013287 246 SLKSNLTRLLARVQKVRDEIEH 267 (446)
Q Consensus 246 ~lK~~L~~l~~~v~~vRe~L~~ 267 (446)
.|.+.+..+...+..+-+.|+.
T Consensus 54 ~L~~~l~~ID~ai~~~l~lIe~ 75 (683)
T PF08580_consen 54 GLREGLEEIDSAISRFLDLIEV 75 (683)
T ss_pred HHHHhHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444
No 105
>PRK02870 heat shock protein HtpX; Provisional
Probab=28.65 E-value=2.1e+02 Score=29.50 Aligned_cols=29 Identities=24% Similarity=0.183 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013287 374 RNELIQLQLILTIASFAIAANTLIAGIFG 402 (446)
Q Consensus 374 rN~l~~~~~~LTi~s~i~~p~t~IaGifG 402 (446)
+|++--..++...+.+.+.++.++.|+||
T Consensus 19 ~n~~kt~~l~~~~~~l~~~~g~~~~~~~~ 47 (336)
T PRK02870 19 RNRLKTRAVIATYLAIFLFIGLLVDAIRI 47 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 46655555555555555566677777887
No 106
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=28.60 E-value=81 Score=34.34 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cc
Q 013287 330 DVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDY-VNIQLDN--QRNELIQLQLILTIASFAIAANTLIAGIFG--MN 404 (446)
Q Consensus 330 ~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~-i~i~Ld~--~rN~l~~~~~~LTi~s~i~~p~t~IaGifG--MN 404 (446)
-.+-+|+-+.+.+.+.|.+...-..|+.+++.+... -++.+-+ -||+=+ .-++.+|+..+.||.-.|| ||
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk-----~Rkvvaimv~maFi~f~~~~p~n 377 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKK-----KRKVVAIMVVMAFIIFNYGSPMN 377 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCccccccc-----chhhhhHHHHHHHHHHhccCccc
Confidence 445567777777777777777767776666554331 1111111 133322 3456677777888999999 99
Q ss_pred CCCCCC
Q 013287 405 IPCQLY 410 (446)
Q Consensus 405 ~~~~~e 410 (446)
+.+.++
T Consensus 378 i~nnln 383 (655)
T KOG4343|consen 378 ILNNLN 383 (655)
T ss_pred ccCCcc
Confidence 988775
No 107
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=28.31 E-value=73 Score=28.75 Aligned_cols=8 Identities=13% Similarity=-0.251 Sum_probs=3.0
Q ss_pred HHHHHHhc
Q 013287 434 VLGYARWK 441 (446)
Q Consensus 434 ~~~yfrrk 441 (446)
.+++.-||
T Consensus 135 giy~~~r~ 142 (145)
T PF10661_consen 135 GIYVVLRK 142 (145)
T ss_pred HHHHHHHH
Confidence 33333333
No 108
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=28.24 E-value=1.6e+02 Score=31.32 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013287 392 AANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL 444 (446)
Q Consensus 392 ~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl 444 (446)
.|.+++.+.|. +. ..|.|+ ++.+..++-++..++++++++|-
T Consensus 405 lp~~~~l~~~~--~g------~~Gvw~---~~~~~~~~~~~~~~~~~~~~~~~ 446 (455)
T COG0534 405 LPLAYLLGFFF--LG------LAGVWI---GFPLSLILRAILLLLRLRRGRWR 446 (455)
T ss_pred HhHHHHHhhhc--cc------chHHHH---HHHHHHHHHHHHHHHHHHHhhhh
Confidence 67777777755 11 124443 33334444556778888888884
No 109
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=28.24 E-value=2.7e+02 Score=30.19 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013287 330 DVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIP 406 (446)
Q Consensus 330 ~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~ 406 (446)
-.+.+|..|..|-.++..+-..+..+++.-.. ++..| .|+-.-..+.=.++.-+.+||.+|-.|--=++.
T Consensus 29 ~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~----l~~~L---~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~~v~ 98 (508)
T PF04129_consen 29 ILESLEEMLSNFQNDLGSISSEIRSLQERSSS----LNVKL---KNRKAVEEKLSPFIDDIVIPPDLIRSICEGPVN 98 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HhHHHHHHHHHHHHHHHcCCHHHHHhHhcCCCC
Confidence 45567788888888888888877777654333 33333 344444555667888888999999999875554
No 110
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.17 E-value=4.3e+02 Score=26.80 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 013287 244 VRSLKSNLTRLLARVQKVRDEIEHLLDDNED 274 (446)
Q Consensus 244 lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~d 274 (446)
+..+..++..+...-..+.+.|+++-+..++
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~ 75 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREE 75 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555444333
No 111
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=28.14 E-value=99 Score=22.09 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=6.1
Q ss_pred HHHHHHHHhcCc
Q 013287 432 LLVLGYARWKKL 443 (446)
Q Consensus 432 ~~~~~yfrrk~w 443 (446)
.+++.+.++|++
T Consensus 21 l~~~~~~~~r~~ 32 (46)
T PF04995_consen 21 LIVWSLRRRRRL 32 (46)
T ss_pred HHHHHHHHHHHH
Confidence 344555555544
No 112
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.01 E-value=1.3e+02 Score=22.70 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013287 247 LKSNLTRLLARVQKVRDEIEHLL 269 (446)
Q Consensus 247 lK~~L~~l~~~v~~vRe~L~~lL 269 (446)
+|++...++..+..+.+-+.+++
T Consensus 19 vk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 113
>PF14163 SieB: Superinfection exclusion protein B
Probab=28.00 E-value=1.7e+02 Score=26.18 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013287 381 QLILTIASFAIAANTLIAGI 400 (446)
Q Consensus 381 ~~~LTi~s~i~~p~t~IaGi 400 (446)
++.+.....+|+|-+++..+
T Consensus 4 ~l~i~~~~llf~P~~~~~~l 23 (151)
T PF14163_consen 4 WLIIFSGLLLFLPESLLEWL 23 (151)
T ss_pred HHHHHHHHHHHCCHHHHHHh
Confidence 45666777788888887754
No 114
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=27.83 E-value=8e+02 Score=26.51 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=27.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 013287 237 STKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDM 275 (446)
Q Consensus 237 ~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm 275 (446)
.+.+-.++|...+.+..-....+++|-...++.++.+++
T Consensus 384 ~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl 422 (489)
T KOG3684|consen 384 SKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSL 422 (489)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 445556777777777777777777777777777776554
No 115
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=27.40 E-value=1.6e+02 Score=34.42 Aligned_cols=18 Identities=33% Similarity=0.700 Sum_probs=9.6
Q ss_pred eeCCCCCCchhhHHHHHH
Q 013287 134 LLDPLRQEVLPFVDQLRQ 151 (446)
Q Consensus 134 ~f~~~~~~~~~f~~~L~~ 151 (446)
+.||.++++...++.+++
T Consensus 547 l~Dp~R~~a~~aI~~l~~ 564 (903)
T PRK15122 547 FLDPPKESAAPAIAALRE 564 (903)
T ss_pred ccCccHHHHHHHHHHHHH
Confidence 345555555555555544
No 116
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.18 E-value=6.7e+02 Score=25.40 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=8.9
Q ss_pred chhhhHHHhCCChhh
Q 013287 81 DKSVIIERAGVPARD 95 (446)
Q Consensus 81 ~k~~i~~~~~L~~RD 95 (446)
.-.++....||+..|
T Consensus 15 sL~~FL~~~~I~F~d 29 (325)
T PF08317_consen 15 SLQDFLNMTGIRFYD 29 (325)
T ss_pred CHHHHHHHhCceeCC
Confidence 334666667777644
No 117
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=26.95 E-value=1.3e+02 Score=25.11 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcch-HHHHHHHHHHHHHHHHH
Q 013287 199 EFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKN-LEHVRSLKSNLTRLLAR 257 (446)
Q Consensus 199 Ef~~LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~-Le~lr~lK~~L~~l~~~ 257 (446)
|+.+|+++++.....=..-..+...-.+.+-+.+...++... .+.+|.||+++.....+
T Consensus 12 Ei~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 12 EIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 778999998874431100001122222223333333444433 45688888877655444
No 118
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.39 E-value=7.2e+02 Score=25.85 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 013287 347 GTRNKILSVREYIDDTEDYVNI--QLDNQRNELIQLQLILTIAS 388 (446)
Q Consensus 347 ~~~~~i~~l~~~i~~~~~~i~i--~Ld~~rN~l~~~~~~LTi~s 388 (446)
.+-+.+++-...+.+..-++.| .+...++.+.++...++|+.
T Consensus 312 ~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 312 QVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 3333334444444555556666 45566778888777777654
No 119
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=26.35 E-value=4.7e+02 Score=28.40 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhcCcc
Q 013287 427 CVLLFLLVLGYARWKKLL 444 (446)
Q Consensus 427 ~~~i~~~~~~yfrrk~wl 444 (446)
.++.+++++.+.||.||+
T Consensus 221 LvvC~v~vlglak~Skc~ 238 (526)
T KOG4433|consen 221 LVVCLVLVLGLAKRSKCL 238 (526)
T ss_pred HHHHHHHHHHHHHhcchh
Confidence 344556788899999985
No 120
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=25.77 E-value=2.1e+02 Score=33.57 Aligned_cols=49 Identities=10% Similarity=-0.127 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 390 AIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 390 i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~w 443 (446)
++.|.+.+.++|||.--.+ .+..|+++. .+..+++.-+.=.+|+||.||
T Consensus 853 ~~~p~~~~~~~~~~~~l~~----~~~~~~~~~-~~~~~~~~e~~K~~~~~~~~~ 901 (902)
T PRK10517 853 IALPFSPLASYLQLQALPL----SYFPWLVAI-LAGYMTLTQLVKGFYSRRYGW 901 (902)
T ss_pred HHhhHHHHHHhhCCcCCCh----hHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 3344445778888763211 111222211 111223333445678888776
No 121
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.76 E-value=4e+02 Score=25.95 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 013287 349 RNKILSVREYIDDTEDYVNI--QLDNQRNELIQLQLIL 384 (446)
Q Consensus 349 ~~~i~~l~~~i~~~~~~i~i--~Ld~~rN~l~~~~~~L 384 (446)
..++..+.+.-+.+++++.+ .|+..+-++..+...+
T Consensus 148 ~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 148 EERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445555544 3444444444433333
No 122
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.59 E-value=1.7e+02 Score=31.57 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013287 380 LQLILTIASFAIAANTLIAGIFGMNIP 406 (446)
Q Consensus 380 ~~~~LTi~s~i~~p~t~IaGifGMN~~ 406 (446)
+..+++|+.++..|++++.|+.|=|-.
T Consensus 399 ~v~v~~iw~fv~~PL~~~G~i~GkN~~ 425 (593)
T KOG1277|consen 399 IVVVLLIWLFVISPLTVLGGIAGKNRS 425 (593)
T ss_pred hHHHHHHHHHHhchHHHcccccccccc
Confidence 445899999999999999999999975
No 123
>PF05802 EspB: Enterobacterial EspB protein
Probab=25.15 E-value=4.7e+02 Score=26.33 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcc
Q 013287 363 EDYVNIQLDNQRNELIQLQLIL--TIASFAIAANTLIAGIFGM 403 (446)
Q Consensus 363 ~~~i~i~Ld~~rN~l~~~~~~L--Ti~s~i~~p~t~IaGifGM 403 (446)
+--++|+.....|+.-.|++.- .+.+.+..+++-+.|++|+
T Consensus 73 ~LgW~IQvasmqtq~kAIDk~~aAA~aa~vgGIlSgVlG~~G~ 115 (317)
T PF05802_consen 73 ELGWEIQVASMQTQRKAIDKKKAAAIAAIVGGILSGVLGAVGS 115 (317)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3457888888888888887643 4555555666666666665
No 124
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=25.09 E-value=3.6e+02 Score=22.92 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.2
Q ss_pred chHHHHHH
Q 013287 414 GIFEIFVG 421 (446)
Q Consensus 414 ~~f~~v~~ 421 (446)
..|..+++
T Consensus 42 ~~~~~~v~ 49 (144)
T PF01284_consen 42 CGFALFVA 49 (144)
T ss_pred hhHHHHHH
Confidence 34444433
No 125
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=25.06 E-value=4.8e+02 Score=23.03 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=4.5
Q ss_pred HHHHHhhccc
Q 013287 395 TLIAGIFGMN 404 (446)
Q Consensus 395 t~IaGifGMN 404 (446)
++++|+||-.
T Consensus 92 ~~~~~~~~~~ 101 (142)
T PF11712_consen 92 VFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHH
Confidence 4444554533
No 126
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=24.39 E-value=96 Score=25.37 Aligned_cols=23 Identities=26% Similarity=0.049 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHH
Q 013287 374 RNELIQLQLILTI-ASFAIAANTL 396 (446)
Q Consensus 374 rN~l~~~~~~LTi-~s~i~~p~t~ 396 (446)
.+-++.+...|+- +..+++...+
T Consensus 39 ~~~l~~i~~~l~gp~~~~i~~i~i 62 (99)
T PF04956_consen 39 TSFLCKIIDWLTGPIGKAIAIIAI 62 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555445555 4444443333
No 127
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=24.16 E-value=93 Score=28.17 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 414 GIFEIFVGSTTTACVLLFLLVLGYARWKK 442 (446)
Q Consensus 414 ~~f~~v~~~~~~~~~~i~~~~~~yfrrk~ 442 (446)
+.+.+++++ ++..++++++.+|+-+|||
T Consensus 30 hm~tILiaI-vVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 30 HMYTILIAI-VVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhhhH
Confidence 334444433 3333444455555555554
No 128
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=24.14 E-value=2.4e+02 Score=25.33 Aligned_cols=54 Identities=11% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCC---CCCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 385 TIASFAIAANTLIAGIFGMNIP---CQLYE----------------TDGIFEIFVGSTTTACVLLFLLVLGYA 438 (446)
Q Consensus 385 Ti~s~i~~p~t~IaGifGMN~~---~~~e~----------------~~~~f~~v~~~~~~~~~~i~~~~~~yf 438 (446)
+.+.+.+....+|++.+++.-. ..||+ +|+.+|.++....+..+.+.++..+|+
T Consensus 39 ~aL~ls~~l~~mig~yl~~~~rr~~~rPED~~daEI~dgAGe~GfFsP~SwWPl~la~~~al~~lGla~g~Wl 111 (137)
T PF12270_consen 39 VALVLSGGLALMIGFYLRFTARRIGPRPEDREDAEIADGAGELGFFSPHSWWPLVLAAAAALVFLGLAFGWWL 111 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCCCCcCcCCCccHhHHHHHHHHHHHHHHHHHHHHH
No 129
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=24.09 E-value=26 Score=23.91 Aligned_cols=10 Identities=10% Similarity=-0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHhc
Q 013287 432 LLVLGYARWK 441 (446)
Q Consensus 432 ~~~~~yfrrk 441 (446)
++.++++|||
T Consensus 30 ~~~~~~~krr 39 (39)
T PF00746_consen 30 GGGLLLVKRR 39 (39)
T ss_dssp ----------
T ss_pred HHHHHheecC
Confidence 4556666664
No 130
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.97 E-value=3.1e+02 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.429 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 013287 244 VRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLY 279 (446)
Q Consensus 244 lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~ 279 (446)
+-.+...+..+++..+.+++.++++-++=.|+..||
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777777777777777776666655555
No 131
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.91 E-value=1.4e+02 Score=23.79 Aligned_cols=28 Identities=11% Similarity=-0.147 Sum_probs=18.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 411 ETDGIFEIFVGSTTTACVLLFLLVLGYA 438 (446)
Q Consensus 411 ~~~~~f~~v~~~~~~~~~~i~~~~~~yf 438 (446)
.+||+|...+.+++.-.+++++++-|++
T Consensus 17 kdP~~Fl~~vll~LtPlfiisa~lSwkL 44 (74)
T PF15086_consen 17 KDPYEFLTTVLLILTPLFIISAVLSWKL 44 (74)
T ss_pred cChHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6789998877666655555555555554
No 132
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.51 E-value=3.2e+02 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 242 EHVRSLKSNLTRLLARVQKVRDEIEHL 268 (446)
Q Consensus 242 e~lr~lK~~L~~l~~~v~~vRe~L~~l 268 (446)
-+|...++++-++..+++.+-..|.++
T Consensus 118 Yqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 118 YQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 355667888888888888888877773
No 133
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=23.49 E-value=3.1e+02 Score=24.33 Aligned_cols=66 Identities=26% Similarity=0.285 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 202 VLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHL 268 (446)
Q Consensus 202 ~LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~l 268 (446)
-+-.+|+.++. -...++.|..++..-+|++.-.--.-.||.=+.|+..|..+.+-|..-|+.-+.+
T Consensus 39 el~~iLe~y~~-~~~d~~~lr~~L~~YLD~IKm~RAkY~lENky~L~~tL~~LtkEVn~Wr~ewd~i 104 (132)
T PF09432_consen 39 ELQSILEKYNT-PSTDTEELRAQLDRYLDDIKMERAKYSLENKYSLQDTLNQLTKEVNYWRKEWDNI 104 (132)
T ss_pred HHHHHHHHHcC-CCccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667887777 5566777777777777777432223457777888888999988888888776544
No 134
>PRK09752 adhesin; Provisional
Probab=23.25 E-value=68 Score=38.21 Aligned_cols=11 Identities=18% Similarity=-0.127 Sum_probs=6.9
Q ss_pred eEEEEEcCCCC
Q 013287 64 RLWMRFDFTGK 74 (446)
Q Consensus 64 ~~W~~id~~g~ 74 (446)
..|+|+.+-+.
T Consensus 986 s~W~R~~GGh~ 996 (1250)
T PRK09752 986 TLNLRVIGGDY 996 (1250)
T ss_pred ceEEEeecCcc
Confidence 46888765543
No 135
>PRK15244 virulence protein SpvB; Provisional
Probab=23.06 E-value=51 Score=36.20 Aligned_cols=33 Identities=9% Similarity=0.278 Sum_probs=16.2
Q ss_pred eeeEEecCeEEeeCCCCCCch----hhHHHHHHhcCC
Q 013287 123 IKAIVTSQEVLLLDPLRQEVL----PFVDQLRQQLPQ 155 (446)
Q Consensus 123 IraII~~d~vl~f~~~~~~~~----~f~~~L~~rl~~ 155 (446)
+.-++..+++=.-.+.+.+.. .++..++.-|..
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~gl~k 460 (591)
T PRK15244 424 KETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLSS 460 (591)
T ss_pred hhhhhcccccCCcccchhhhhhhhhHHHHHHHHHHHh
Confidence 444455555444444443332 366666666543
No 136
>PF13140 DUF3980: Domain of unknown function (DUF3980)
Probab=22.94 E-value=2.5e+02 Score=22.53 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC
Q 013287 382 LILTIASFAIAANTLIAGIFGMNIPC 407 (446)
Q Consensus 382 ~~LTi~s~i~~p~t~IaGifGMN~~~ 407 (446)
|+|-+++.+....+.+++++---+-+
T Consensus 12 kilkimsviyli~sil~afs~~sli~ 37 (87)
T PF13140_consen 12 KILKIMSVIYLIVSILMAFSAGSLIH 37 (87)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45666777777777777777655543
No 137
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=22.88 E-value=2.2e+02 Score=24.94 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCccC
Q 013287 384 LTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLLG 445 (446)
Q Consensus 384 LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl~ 445 (446)
..+.+++...+.++.-+.|+=+..+-. +|+..+.+ ++.+..-.|++||+|+.
T Consensus 6 valLa~C~L~G~~lGdlLG~llGV~aN---------VGGVGiAM-lLLi~~~~~l~k~G~l~ 57 (125)
T TIGR00807 6 VALLAVCHLLGVYLGNILGMALGVKAN---------VGGVGIAM-ILLIISKELLAKRGHLP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc---------cchHHHHH-HHHHHHHHHHHHcCCCC
Confidence 456677777788888888876543222 22222222 23356678899999985
No 138
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=22.84 E-value=4.6e+02 Score=23.24 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013287 248 KSNLTRLLARVQKVRDEIEHL 268 (446)
Q Consensus 248 K~~L~~l~~~v~~vRe~L~~l 268 (446)
++++..|..+|..+...|+++
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665555554
No 139
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=22.82 E-value=1.1e+02 Score=33.52 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=12.1
Q ss_pred eeEEecCeEEeeCCCCC
Q 013287 124 KAIVTSQEVLLLDPLRQ 140 (446)
Q Consensus 124 raII~~d~vl~f~~~~~ 140 (446)
..+|-..+|+.+-|...
T Consensus 367 ~~~~nEyevvYiKpLAg 383 (574)
T PF07462_consen 367 PEGINEYEVVYIKPLAG 383 (574)
T ss_pred cCcCCccceEEecchHH
Confidence 56677778888877653
No 140
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=22.69 E-value=1e+02 Score=34.34 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHH
Q 013287 372 NQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGST 423 (446)
Q Consensus 372 ~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~ 423 (446)
..++|... +.+.+..+++.+++.+.++-.+.. ...|.|.||+..+..
T Consensus 160 p~k~R~~~----~~~~~~~~i~~~~~~~~ia~~~~~-~~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 160 PNKWRGLG----LAIASIPFIITTWISPLIAQLFAA-HSGWRWIFYIFIIWS 206 (599)
T ss_pred ccchhhhH----hHHHHHHHHhhhcccHHHHHHhcc-CCCcchHHHHHHHHH
Confidence 45677543 455566667777777777766532 348999998875543
No 141
>PRK13682 hypothetical protein; Provisional
Probab=22.69 E-value=78 Score=23.50 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhcc
Q 013287 387 ASFAIAANTLIAGIFGM 403 (446)
Q Consensus 387 ~s~i~~p~t~IaGifGM 403 (446)
++.+|...++|||+||.
T Consensus 4 waliFliiA~iA~~lGF 20 (51)
T PRK13682 4 WAIIFLVIALIAAVLGF 20 (51)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 67889999999999994
No 142
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.67 E-value=1.2e+03 Score=26.70 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 013287 240 NLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNED 274 (446)
Q Consensus 240 ~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~d 274 (446)
.+++|..++.+...++.+..++.+-++++.+.-+.
T Consensus 577 Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~ 611 (717)
T PF10168_consen 577 QLKELQELQEERKSLRESAEKLAERYEEAKDKQEK 611 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666777777777777766665444
No 143
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=22.61 E-value=2e+02 Score=21.21 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHH
Q 013287 383 ILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTT 425 (446)
Q Consensus 383 ~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~ 425 (446)
..+-++++++...+..|+| |.+ ..-|.-|||.+..++.+
T Consensus 3 ~~~~~~f~i~~~~~~iGl~--~~~--~~l~~KGy~~~~~l~~l 41 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLW--NAP--LDLSEKGYYAMGLLFLL 41 (53)
T ss_pred hHHHHHHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHHH
Confidence 3566788888899999999 433 34566788877654443
No 144
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=22.61 E-value=5.9e+02 Score=23.18 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 331 VEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVN 367 (446)
Q Consensus 331 ~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~ 367 (446)
.+.++.-.+.|=.+.+.+....++++...+..+...+
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d 104 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESD 104 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455566677777777777777777666655554443
No 145
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.51 E-value=4.1e+02 Score=21.30 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 207 LEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHL 268 (446)
Q Consensus 207 L~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~l 268 (446)
+......++..++.+++++.++.++... .++....+....+.-...++++-+.+.++
T Consensus 24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~-----ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 24 LKKTLDEVNKTIDTLQEQVDPITKEIND-----LLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
No 146
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=22.33 E-value=7.4e+02 Score=25.23 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhc
Q 013287 259 QKVRDEIEHLLD 270 (446)
Q Consensus 259 ~~vRe~L~~lL~ 270 (446)
..++++|.++..
T Consensus 32 d~l~~~L~~l~~ 43 (313)
T PF05461_consen 32 DALREALKELTE 43 (313)
T ss_pred HHHHHHHHHHHh
Confidence 344444444444
No 147
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=22.30 E-value=1.9e+02 Score=20.91 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=7.3
Q ss_pred HHHHHHHhhcc
Q 013287 393 ANTLIAGIFGM 403 (446)
Q Consensus 393 p~t~IaGifGM 403 (446)
.+.++++.+|+
T Consensus 10 vGg~l~~~lg~ 20 (48)
T PF04226_consen 10 VGGWLFGLLGI 20 (48)
T ss_pred HHHHHHHHhcc
Confidence 45666777776
No 148
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=22.27 E-value=9.6e+02 Score=25.52 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 338 LEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDN 372 (446)
Q Consensus 338 le~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~ 372 (446)
+.+=.+-++.+..+++.+.+.+..+.+++....|.
T Consensus 300 l~PAmrTC~a~~~R~~~Ls~rv~Ra~~LLRTrVdv 334 (420)
T PF11902_consen 300 LTPAMRTCEAVERRQEDLSRRVARATDLLRTRVDV 334 (420)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44455556777777788877777777776654443
No 149
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=21.74 E-value=72 Score=33.88 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=3.6
Q ss_pred CCCCCCCCCC
Q 013287 20 KLEPPPSPAP 29 (446)
Q Consensus 20 ~~~~~~~~~~ 29 (446)
.|..|+||+|
T Consensus 232 ~~g~PPPPPP 241 (480)
T KOG2675|consen 232 APGAPPPPPP 241 (480)
T ss_pred CCCCCCCCCC
Confidence 3333333333
No 150
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.74 E-value=5.4e+02 Score=27.97 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCch
Q 013287 199 EFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVR-----DEIEHLLDDNE 273 (446)
Q Consensus 199 Ef~~LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vR-----e~L~~lL~dd~ 273 (446)
++..||.++..+-..++.+-..|......+..+ ...-+.+.-.-+..+++++..|+..|..-| |+|+++++--.
T Consensus 141 q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE-~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsa 219 (508)
T PF00901_consen 141 QIEILEKALKSYGKIVKEENKQLDRLARALQKE-SRERTQDERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSA 219 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccH
Confidence 567899999998888887777776654433332 222333444456778888888888887665 56666776655
Q ss_pred hh
Q 013287 274 DM 275 (446)
Q Consensus 274 dm 275 (446)
|+
T Consensus 220 eV 221 (508)
T PF00901_consen 220 EV 221 (508)
T ss_pred HH
Confidence 54
No 151
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.74 E-value=4e+02 Score=27.93 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=36.0
Q ss_pred HHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 208 EVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEH 267 (446)
Q Consensus 208 ~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~ 267 (446)
..+...++.++..++..+..+.+.+..+. +.-.++..+.+++..+.+++..+.+.+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~--k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP--KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666677777777776666666544 33445666777777777777666655443
No 152
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.70 E-value=3.9e+02 Score=23.56 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013287 245 RSLKSNLTRLLARVQKVRDEIE 266 (446)
Q Consensus 245 r~lK~~L~~l~~~v~~vRe~L~ 266 (446)
-.++..+.++...++.+...+.
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 153
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.48 E-value=9.2e+02 Score=25.01 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 013287 333 DLEMLLEAYFMQL 345 (446)
Q Consensus 333 ele~Lle~Y~~~~ 345 (446)
+.+.++|.|-.|+
T Consensus 301 l~kq~l~~~A~d~ 313 (365)
T KOG2391|consen 301 LYKQILECYALDL 313 (365)
T ss_pred HHHHHHHhhhhhh
Confidence 3445566676664
No 154
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=21.42 E-value=32 Score=29.83 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcccCC
Q 013287 390 AIAANTLIAGIFGMNIP 406 (446)
Q Consensus 390 i~~p~t~IaGifGMN~~ 406 (446)
+++..++++|+++.-..
T Consensus 24 ~~gi~~~~~g~~~~~~~ 40 (144)
T PF01957_consen 24 WGGIAAFIAGLLGLFFP 40 (144)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555677777776664
No 155
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=21.25 E-value=1.2e+02 Score=25.69 Aligned_cols=9 Identities=11% Similarity=-0.259 Sum_probs=4.5
Q ss_pred chHHHHHHH
Q 013287 414 GIFEIFVGS 422 (446)
Q Consensus 414 ~~f~~v~~~ 422 (446)
|.||.++++
T Consensus 22 w~FWlv~~l 30 (102)
T PF11669_consen 22 WYFWLVWVL 30 (102)
T ss_pred HHHHHHHHH
Confidence 345655443
No 156
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=21.22 E-value=2.3e+02 Score=24.62 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=15.5
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 407 CQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKK 442 (446)
Q Consensus 407 ~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~ 442 (446)
++.-...||+..+++ ++++.|.|+|+++
T Consensus 64 ~~~~A~nwavgsF~l--------~s~~~we~Cr~~r 91 (118)
T PF12597_consen 64 NPRKAANWAVGSFFL--------GSLGSWEYCRYNR 91 (118)
T ss_pred CCccchhhhhHHHHH--------HHHHHHHHHHHHH
Confidence 333345555554443 3346788888764
No 157
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.17 E-value=5.6e+02 Score=22.34 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 247 LKSNLTRLLARVQKVRDEIEHLLDD 271 (446)
Q Consensus 247 lK~~L~~l~~~v~~vRe~L~~lL~d 271 (446)
+|.++.++.+.=..++++|-.+...
T Consensus 35 l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 35 LQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555544444
No 158
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=21.02 E-value=6.4e+02 Score=24.75 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013287 337 LLEAYFMQLDGTRNKILSVRE----YIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFG 402 (446)
Q Consensus 337 Lle~Y~~~~d~~~~~i~~l~~----~i~~~~~~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifG 402 (446)
-++.|+.++.+-.+++|..-. ..+-++.+ .-++.+.-+.-....+..+..+.+|+.+.+=+.|
T Consensus 144 al~r~~~~l~~~~~~ie~~LalGat~~eA~~~~---~r~ai~~al~P~i~~m~~vGlVslPGmMtG~IL~ 210 (250)
T PF03649_consen 144 ALERFYSELRERRDEIEALLALGATPREAVRPF---IRRAIRAALIPTINSMKTVGLVSLPGMMTGQILG 210 (250)
T ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHH---HHHHHHHHhHhHHHhhhhhheeechHHHHHHHHc
Confidence 367777777555555554432 22222222 2344566666666677888888999988777765
No 159
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=20.99 E-value=53 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 013287 420 VGSTTTACVLLFLLVLGYARWKK 442 (446)
Q Consensus 420 ~~~~~~~~~~i~~~~~~yfrrk~ 442 (446)
+=+.+++|++..+..++.||||+
T Consensus 36 iPl~L~LCiLvl~yai~~fkrkG 58 (74)
T PF11857_consen 36 IPLVLLLCILVLIYAIFQFKRKG 58 (74)
T ss_pred HHHHHHHHHHHHHHHhheeeecC
Confidence 33445577777677777789886
No 160
>PRK08456 flagellar motor protein MotA; Validated
Probab=20.99 E-value=1.8e+02 Score=28.65 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhh--cccCCCCCCCCCchHHHHHHHHHHHH
Q 013287 383 ILTIASFAIAANTLIAGIF--GMNIPCQLYETDGIFEIFVGSTTTAC 427 (446)
Q Consensus 383 ~LTi~s~i~~p~t~IaGif--GMN~~~~~e~~~~~f~~v~~~~~~~~ 427 (446)
..|++.++++...++.|++ |=|+... -++.++.+|+|+++...
T Consensus 3 ~~tiiG~~~~~~~i~~~~~~~gg~~~~~--~~~~~~~IV~Ggt~~a~ 47 (257)
T PRK08456 3 LSTILGMVLAVASISVGDILEGGNPLHV--IHLSSFIIVVPTALFAA 47 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHH--hhHhHHHHHHHHHHHHH
Confidence 5788888888888888865 4343321 23566777777766443
No 161
>COG4267 Predicted membrane protein [Function unknown]
Probab=20.95 E-value=7.8e+02 Score=26.18 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 372 NQRNELIQLQLILTIAS-FAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKK 442 (446)
Q Consensus 372 ~~rN~l~~~~~~LTi~s-~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~ 442 (446)
+.|..+.++|++=..++ ++|+.+..+-++|||---+ -+--+|-++|+...+.....+....||-+++
T Consensus 325 tlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~ 392 (467)
T COG4267 325 TLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRR 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556665555433333 4556667778899986321 1222344455444444444445667776665
No 162
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=20.91 E-value=2.9e+02 Score=32.36 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHH
Q 013287 385 TIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGST 423 (446)
Q Consensus 385 Ti~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~ 423 (446)
+..++.++-.|.++|+.+|-+-..+.-...|+...++++
T Consensus 277 ~g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a~gvl 315 (910)
T TIGR00833 277 TGKAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVL 315 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 344555666777777777777543333333444444433
No 163
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=20.88 E-value=1.6e+02 Score=26.99 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCchhhh
Q 013287 241 LEHVRSLKSNLTRLLARV---QKVRDEIEHLLDDNEDMA 276 (446)
Q Consensus 241 Le~lr~lK~~L~~l~~~v---~~vRe~L~~lL~dd~dm~ 276 (446)
|.+|..+++.|..|+..+ ..+|+.|+++|.|++.+.
T Consensus 112 L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~ 150 (159)
T TIGR03358 112 LKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLE 150 (159)
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHH
Confidence 566677777788887765 579999999999877654
No 164
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=20.86 E-value=4e+02 Score=26.96 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 372 NQRNELIQLQLILTIASFAIAANTLI 397 (446)
Q Consensus 372 ~~rN~l~~~~~~LTi~s~i~~p~t~I 397 (446)
+.+.++-++ ++|.+|++++...+.
T Consensus 222 ai~~~lrr~--l~TslTt~l~llpL~ 245 (297)
T PRK13021 222 AIVATFSRT--MVTSGTTLMTVGALW 245 (297)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 334444443 445555555544443
No 165
>PF15125 TMEM238: TMEM238 protein family
Probab=20.85 E-value=4.1e+02 Score=20.71 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 013287 384 LTIASFAIAANTLIAGIFG 402 (446)
Q Consensus 384 LTi~s~i~~p~t~IaGifG 402 (446)
+.++--.+....+++|+|+
T Consensus 9 laV~fD~vGl~~Ll~GiFa 27 (65)
T PF15125_consen 9 LAVVFDVVGLVMLLTGIFA 27 (65)
T ss_pred HHHHHHHhhHHHHHHHHhc
Confidence 4444445566677889998
No 166
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=20.84 E-value=1.3e+02 Score=29.26 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013287 422 STTTACVLLFLLVLGYAR 439 (446)
Q Consensus 422 ~~~~~~~~i~~~~~~yfr 439 (446)
.|++++++.|+.|+++.+
T Consensus 221 ~miI~v~~sFVsMiliiq 238 (244)
T KOG2678|consen 221 TMIIFVILSFVSMILIIQ 238 (244)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444456666665544
No 167
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=20.76 E-value=1.4e+02 Score=29.18 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=22.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 411 ETDGIFEIFVGSTTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 411 ~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~w 443 (446)
......|+.+++|+++.+++.-.++-|.|=|||
T Consensus 189 ~~~~~~wla~~Lm~~G~fI~irsi~dY~rVKR~ 221 (233)
T PF10176_consen 189 ASQSNPWLAYILMAFGWFIFIRSIIDYWRVKRM 221 (233)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666766666666688888888887
No 168
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=20.75 E-value=3.9e+02 Score=20.55 Aligned_cols=9 Identities=11% Similarity=0.084 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 013287 432 LLVLGYARW 440 (446)
Q Consensus 432 ~~~~~yfrr 440 (446)
.++..++|+
T Consensus 54 ~~i~~~~~~ 62 (63)
T PF13127_consen 54 SLIIYLIKK 62 (63)
T ss_pred HHHHHHHhc
Confidence 344444443
No 169
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.65 E-value=2.1e+02 Score=25.93 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 329 NDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNI 368 (446)
Q Consensus 329 ~~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i 368 (446)
.+.+.+|+++..++++++.+...++.++..++.++....-
T Consensus 39 ~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 39 KDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445689999999999999999999998888887776543
No 170
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.60 E-value=63 Score=31.87 Aligned_cols=24 Identities=4% Similarity=-0.063 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 415 IFEIFVGSTTTACVLLFLLVLGYA 438 (446)
Q Consensus 415 ~f~~v~~~~~~~~~~i~~~~~~yf 438 (446)
|.|++|++.+++.+++++=.++|+
T Consensus 228 giY~~wv~~~l~a~~~~~rs~yy~ 251 (256)
T PF09788_consen 228 GIYVSWVGLFLIALICLIRSIYYC 251 (256)
T ss_pred cEeHHHHHHHHHHHHHHHHhheeE
Confidence 445555544444443434344443
No 171
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=20.60 E-value=1.9e+02 Score=18.85 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHH
Q 013287 415 IFEIFVGSTTTAC 427 (446)
Q Consensus 415 ~f~~v~~~~~~~~ 427 (446)
.|-+++|+.++++
T Consensus 3 YfaWilG~~lA~~ 15 (28)
T PF08173_consen 3 YFAWILGVLLACA 15 (28)
T ss_pred hHHHHHHHHHHHH
Confidence 3445555544433
No 172
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.59 E-value=1.1e+03 Score=25.76 Aligned_cols=117 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcch
Q 013287 203 LEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTR 282 (446)
Q Consensus 203 LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~ 282 (446)
++..=..+-......+.++|..+..+.+.+.+.--.+.-+.+..+...+..+...+..+++.|.++++.++. .+
T Consensus 62 fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~------nr 135 (560)
T PF06160_consen 62 FEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEK------NR 135 (560)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Q ss_pred hhhhhhhhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 283 RRIQNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDT 362 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~ 362 (446)
.. ...-.+..+.+-..+..+-......+..+++.++.+
T Consensus 136 ~~------------------------------------------i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~i 173 (560)
T PF06160_consen 136 EE------------------------------------------IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENI 173 (560)
T ss_pred HH------------------------------------------HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHH
Q ss_pred HHHHH
Q 013287 363 EDYVN 367 (446)
Q Consensus 363 ~~~i~ 367 (446)
++.++
T Consensus 174 e~~F~ 178 (560)
T PF06160_consen 174 EEEFS 178 (560)
T ss_pred HHHHH
No 173
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=20.57 E-value=2.7e+02 Score=18.83 Aligned_cols=26 Identities=15% Similarity=-0.076 Sum_probs=10.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHH
Q 013287 410 YETDGIFEIFVGSTTTACVLLFLLVL 435 (446)
Q Consensus 410 e~~~~~f~~v~~~~~~~~~~i~~~~~ 435 (446)
|+.|.|-..++++..+..++.+.+.+
T Consensus 2 eekp~Gal~vv~iLt~~ILvFWfgvf 27 (34)
T PF08113_consen 2 EEKPKGALGVVMILTAFILVFWFGVF 27 (34)
T ss_dssp --STHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceeeeHHHHHHHHHHHHHHHH
Confidence 44566655555444433333333333
No 174
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.45 E-value=7.3e+02 Score=23.42 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=18.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 237 STKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLD 270 (446)
Q Consensus 237 ~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~ 270 (446)
+..+|+-|.+||.++..++.+.......+.++..
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~ 55 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQ 55 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666555555555544444444443
No 175
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=20.41 E-value=4.5e+02 Score=20.97 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 332 EDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNI 368 (446)
Q Consensus 332 eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i 368 (446)
++++++.+.--+.+|.++++-+.++..-+.++++.+-
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~ 46 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDN 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 4455555555556677766666666656666655544
Done!