Query 013287
Match_columns 446
No_of_seqs 227 out of 1533
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:45:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 5.9E-51 2E-55 395.3 27.4 239 63-377 16-261 (261)
2 2iub_A CORA, divalent cation t 100.0 2.7E-38 9.2E-43 322.4 26.4 279 61-444 68-363 (363)
3 4ev6_A Magnesium transport pro 100.0 4.7E-37 1.6E-41 310.5 32.2 279 61-444 47-339 (339)
4 4egw_A Magnesium transport pro 99.8 3.9E-18 1.3E-22 167.4 20.7 222 60-382 46-280 (280)
5 3nvo_A Zinc transport protein 99.6 3.7E-14 1.3E-18 137.4 19.4 209 61-379 39-263 (264)
6 3ck6_A Putative membrane trans 99.6 9.7E-14 3.3E-18 133.7 17.5 204 65-381 32-252 (252)
7 2bbh_A Divalent cation transpo 99.4 2.1E-12 7.1E-17 125.4 12.6 169 61-272 59-242 (269)
8 2hn1_A CORA, magnesium and cob 99.3 7.4E-12 2.5E-16 121.5 13.6 167 61-272 64-242 (266)
9 4ev6_A Magnesium transport pro 95.9 0.23 7.9E-06 49.2 16.5 94 345-443 239-335 (339)
10 2iub_A CORA, divalent cation t 94.9 0.2 6.9E-06 50.1 12.2 102 337-443 255-359 (363)
11 1nfn_A Apolipoprotein E3; lipi 82.7 9.2 0.00031 34.7 10.6 30 330-359 129-159 (191)
12 3s84_A Apolipoprotein A-IV; fo 65.7 73 0.0025 30.3 12.5 30 330-359 89-119 (273)
13 2ks1_B Epidermal growth factor 61.3 10 0.00034 26.3 3.9 14 429-442 26-39 (44)
14 3ghg_A Fibrinogen alpha chain; 61.1 81 0.0028 32.9 12.2 41 332-372 120-160 (562)
15 2k1k_A Ephrin type-A receptor 60.3 7.3 0.00025 26.1 3.0 9 433-441 29-37 (38)
16 1gs9_A Apolipoprotein E, APOE4 59.3 27 0.00091 30.9 7.5 33 327-359 126-159 (165)
17 2l2t_A Receptor tyrosine-prote 59.0 9.8 0.00034 26.3 3.5 13 430-442 26-38 (44)
18 2jwa_A Receptor tyrosine-prote 57.1 16 0.00055 25.2 4.3 18 426-443 23-40 (44)
19 2l7b_A Apolipoprotein E, APO-E 56.7 24 0.00083 34.4 7.4 27 246-272 111-137 (307)
20 3v86_A De novo design helix; c 50.8 33 0.0011 20.5 4.3 25 244-268 2-26 (27)
21 2k9y_A Ephrin type-A receptor 49.5 14 0.00049 24.6 3.1 7 435-441 33-39 (41)
22 1txp_A HnRNP C, heterogeneous 43.7 22 0.00074 22.0 2.9 24 245-268 2-25 (28)
23 3r2p_A Apolipoprotein A-I; amp 43.5 74 0.0025 28.2 7.9 28 329-356 155-183 (185)
24 3ck6_A Putative membrane trans 41.3 48 0.0016 30.4 6.6 30 346-375 213-242 (252)
25 2k21_A Potassium voltage-gated 41.2 21 0.00073 30.2 3.5 33 411-443 48-80 (138)
26 2ca5_A MXIH; transport protein 39.8 1.3E+02 0.0044 23.6 7.5 65 207-271 12-81 (85)
27 3r2p_A Apolipoprotein A-I; amp 39.5 1.1E+02 0.0038 27.0 8.5 7 339-345 143-149 (185)
28 3swf_A CGMP-gated cation chann 39.4 1.3E+02 0.0043 23.1 7.5 20 245-264 35-54 (74)
29 2g0u_A Type III secretion syst 36.2 1.5E+02 0.005 23.7 7.5 59 206-264 17-76 (92)
30 4dnd_A Syntaxin-10, SYN10; str 35.0 1.7E+02 0.0058 24.6 8.4 64 199-265 64-128 (130)
31 1nfn_A Apolipoprotein E3; lipi 35.0 62 0.0021 29.1 6.0 16 330-345 107-122 (191)
32 3ghg_A Fibrinogen alpha chain; 34.4 1.2E+02 0.0041 31.6 8.5 9 255-263 116-124 (562)
33 1t3j_A Mitofusin 1; coiled coi 34.4 1.8E+02 0.0061 23.3 8.9 33 195-227 33-65 (96)
34 1iij_A ERBB-2 receptor protein 31.8 18 0.00061 23.8 1.2 14 429-442 22-35 (35)
35 2knc_A Integrin alpha-IIB; tra 31.4 56 0.0019 23.5 3.9 7 436-442 37-43 (54)
36 2j69_A Bacterial dynamin-like 30.3 5.3E+02 0.018 27.5 18.1 29 242-270 366-394 (695)
37 2a01_A Apolipoprotein A-I; fou 29.7 58 0.002 30.3 5.0 29 329-357 154-183 (243)
38 2zw3_A GAP junction beta-2 pro 29.0 1.5E+02 0.005 27.5 7.5 62 382-443 136-218 (226)
39 4egw_A Magnesium transport pro 27.6 1.9E+02 0.0066 26.8 8.4 18 249-266 197-214 (280)
40 2k1a_A Integrin alpha-IIB; sin 27.3 1.1E+02 0.0037 20.8 4.7 13 412-424 6-18 (42)
41 2lem_A Apolipoprotein A-I; lip 25.6 2.6E+02 0.0087 25.3 8.6 30 328-357 152-182 (216)
42 2lf0_A Uncharacterized protein 25.3 1.1E+02 0.0039 25.4 5.3 74 216-289 10-84 (123)
43 3trt_A Vimentin; cytoskeleton, 25.1 2.1E+02 0.0073 21.2 7.5 29 240-268 47-75 (77)
44 2a01_A Apolipoprotein A-I; fou 25.1 2.4E+02 0.0081 26.0 8.4 28 329-356 110-138 (243)
45 1gs9_A Apolipoprotein E, APOE4 24.7 54 0.0019 28.8 3.6 16 330-345 107-122 (165)
46 2knc_B Integrin beta-3; transm 24.4 61 0.0021 25.0 3.4 15 422-436 16-30 (79)
47 3s8f_C Cytochrome C oxidase po 24.2 1.4E+02 0.0047 19.4 4.4 29 410-438 2-30 (34)
48 3okq_A BUD site selection prot 24.0 3.4E+02 0.012 23.2 8.7 29 206-234 18-46 (141)
49 3p8c_D Wiskott-aldrich syndrom 23.7 2.9E+02 0.0099 26.4 8.7 58 202-267 25-82 (279)
50 4fla_A Regulation of nuclear P 23.5 3E+02 0.01 23.7 8.1 70 202-271 72-146 (152)
51 2l8s_A Integrin alpha-1; trans 22.4 1.4E+02 0.0047 21.5 4.6 7 436-442 34-40 (54)
52 1m1j_A Fibrinogen alpha subuni 20.9 5.8E+02 0.02 26.1 10.5 106 229-389 52-157 (491)
53 1vcs_A Vesicle transport throu 20.2 3.2E+02 0.011 21.7 7.1 22 241-262 73-94 (102)
54 3iyk_A VP5; icosahedral virus; 20.1 3.9E+02 0.013 27.7 9.1 76 199-275 147-227 (526)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-51 Score=395.30 Aligned_cols=239 Identities=25% Similarity=0.372 Sum_probs=219.7
Q ss_pred ceEEEEEcCCCCeeEEe--echhhhHHHhCCChhhhhhhCCCC-CccceeEeecCeeEeeccceeeEEecCeEEeeCCCC
Q 013287 63 ARLWMRFDFTGKSELVE--CDKSVIIERAGVPARDLRILGPVF-SHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLR 139 (446)
Q Consensus 63 ~~~W~~id~~g~~~~~e--~~k~~i~~~~~L~~RDLr~Ld~~~-~~~~~Il~Re~aIlvnle~IraII~~d~vl~f~~~~ 139 (446)
...|..||..|++..++ ++|++|++++||+|||||+|||.+ ++.|+|++|++||+||+++|||||++|+|++|++.+
T Consensus 16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~ 95 (261)
T 3rkg_A 16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTN 95 (261)
T ss_dssp EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSC
T ss_pred eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCC
Confidence 67999999999999977 999999999999999999999974 689999999999999999999999999999999987
Q ss_pred CCch----hhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHHHHHHHhhhh
Q 013287 140 QEVL----PFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLD 215 (446)
Q Consensus 140 ~~~~----~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~iL~~v~~~Le 215 (446)
+.+. .|+..+..|+..+. .+.+||||+|||+||.++|..|+
T Consensus 96 ~~~~~~~~~f~~~l~~~l~~~~-----------------------------------~~~lPFEfraLEa~L~~v~~~Le 140 (261)
T 3rkg_A 96 PSAAAKLSVLMYDLESKLSSTK-----------------------------------NNSQFYEHRALESIFINVMSALE 140 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS-----------------------------------CCSSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHhccCC-----------------------------------CCCCChHHHHHHHHHHHHHHHHH
Confidence 6554 48888888886421 13689999999999999999999
Q ss_pred hHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhhhhhhhcCCC
Q 013287 216 SSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPG 295 (446)
Q Consensus 216 ~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~ 295 (446)
+++..++..+.+++++|..++++..|++|+..++.|+.+.++++.+|++|+++|+||+||+.||||++..
T Consensus 141 ~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~---------- 210 (261)
T 3rkg_A 141 TDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS---------- 210 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999997631
Q ss_pred CCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 296 PAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRN 375 (446)
Q Consensus 296 ~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN 375 (446)
..++|+|+|||+|+||+++|++.++++.+.+++++||+++++.||+.||
T Consensus 211 -------------------------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN 259 (261)
T 3rkg_A 211 -------------------------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRN 259 (261)
T ss_dssp -------------------------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred -------------------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5679999999999999999999999999999999999999999999999
Q ss_pred HH
Q 013287 376 EL 377 (446)
Q Consensus 376 ~l 377 (446)
++
T Consensus 260 ~L 261 (261)
T 3rkg_A 260 SL 261 (261)
T ss_dssp --
T ss_pred CC
Confidence 85
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=2.7e-38 Score=322.44 Aligned_cols=279 Identities=17% Similarity=0.231 Sum_probs=211.5
Q ss_pred CCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeE--e------------eccceee
Q 013287 61 GGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMV--V------------NLEFIKA 125 (446)
Q Consensus 61 ~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIl--v------------nle~Ira 125 (446)
++...|+++++..+.+.++ .|++.||||+..+++ ++. .++|++...+++++ + ..+++.+
T Consensus 68 ~~~~~Wi~l~~p~~~~e~~----~l~~~f~l~~l~ied~l~~--~~rpk~e~~~~~lfivl~~~~~~~~~~~~~~~~v~~ 141 (363)
T 2iub_A 68 SSTPTWINITGIHRTDVVQ----RVGEFFGIHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSL 141 (363)
T ss_dssp CSSCEEEEEECTTCHHHHH----HHHHHTTCCHHHHHHHHCC--SSCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCeEEEEeCCCCCHHHHH----HHHHHcCcChhHHHHHhCC--CCCCeEEEECCEEEEEEEeeeecccccccceEEEEE
Confidence 4568999999997555553 899999999999997 676 88999999888663 2 3357899
Q ss_pred EEecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHH
Q 013287 126 IVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEI 205 (446)
Q Consensus 126 II~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~ 205 (446)
+++.|+|++|.+.+. +.++.+++|+..... ..+ ..+.+++ -+.++|.
T Consensus 142 ~l~~~~liTv~~~~~---~~~~~v~~rl~~~~~---------------------~~~-------~~~~~~l--l~~lld~ 188 (363)
T 2iub_A 142 ILTKNCVLMFQEKIG---DVFDPVRERIRYNRG---------------------IIR-------KKRADYL--LYSLIDA 188 (363)
T ss_dssp EEETTEEEEEESSSC---CSCHHHHHHHHTTCT---------------------TTT-------TSCHHHH--HHHHHHH
T ss_pred EEECCEEEEEEeCCC---chHHHHHHHHHhcCC---------------------ccc-------cCCHHHH--HHHHHHH
Confidence 999999999987653 468888888864310 011 1112223 2367777
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhh
Q 013287 206 ALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRI 285 (446)
Q Consensus 206 iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~ 285 (446)
+++.+...++ .+++.++.+++++....+...++++..+|+++..+++.+++.|++++.+.+.+... ++
T Consensus 189 ivd~y~~~l~----~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~----~~---- 256 (363)
T 2iub_A 189 LVDDYFVLLE----KIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL----IE---- 256 (363)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSS----CH----
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CC----
Confidence 7777777665 56777777777776665566799999999999999999999999999998864321 11
Q ss_pred hhhhhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 013287 286 QNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYIDDTED 364 (446)
Q Consensus 286 ~~~~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i~~~~~ 364 (446)
.-...||+|+ ||+.+.++.++.+.+.+..
T Consensus 257 --------------------------------------------------~~~~~~lrDv~d~~~~~~e~~~~~re~l~~ 286 (363)
T 2iub_A 257 --------------------------------------------------KETVPYFRDVYDHTIQIADTVETFRDIVSG 286 (363)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1136799999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 365 YVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLY-ETDGIFEIFVGSTTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 365 ~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e-~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~w 443 (446)
+.+.+++..+|++|++||+||++|++|+|+|||||+|||||++||| +|+||||+++++|+++| +++++|||||||
T Consensus 287 l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~----~~~~~~Fkrk~W 362 (363)
T 2iub_A 287 LLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIA----VIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHH----HHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHH----HHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999 99999999999876544 588999999999
Q ss_pred c
Q 013287 444 L 444 (446)
Q Consensus 444 l 444 (446)
|
T Consensus 363 l 363 (363)
T 2iub_A 363 L 363 (363)
T ss_dssp -
T ss_pred C
Confidence 7
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.7e-37 Score=310.50 Aligned_cols=279 Identities=16% Similarity=0.185 Sum_probs=224.8
Q ss_pred CCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeEe-----------eccceeeEEe
Q 013287 61 GGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMVV-----------NLEFIKAIVT 128 (446)
Q Consensus 61 ~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIlv-----------nle~IraII~ 128 (446)
..+..|+++.+..+.++ ..|++.||||+..++. +++ .++|+++..++..++ ..+++.++++
T Consensus 47 d~~~vWIdl~~Pt~~E~-----~~l~~~~~l~~~~~ed~l~~--~~rpk~e~~~~~~~iv~~~~~~~~~~~~~~v~i~l~ 119 (339)
T 4ev6_A 47 DYRLIWIDCYDPKDEEL-----YKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYIK 119 (339)
T ss_dssp SCSCEEEEEESCCHHHH-----HHHHHHHTCCHHHHHHHHCT--TCCCEEEEETTEEEEECCCCCCTTTCCCCCCEEEEE
T ss_pred CCCEEEEEeCCCCHHHH-----HHHHHHHCcCHhHHHHhhCC--ccCCeEEEECCEEEEEEecCccCCCcceEEEEEEEE
Confidence 44678999999877664 3799999999999997 777 889999998886553 3468999999
Q ss_pred cCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHHHH
Q 013287 129 SQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALE 208 (446)
Q Consensus 129 ~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~iL~ 208 (446)
.+.|++|...+ .+.++.+++++...... ... ..+.+++ -+.++|.+++
T Consensus 120 ~~~lITv~~~~---~~~~~~~~~~~~~~~~~---------------------~~~------~~~~~~l--l~~lld~ivd 167 (339)
T 4ev6_A 120 NNLLLTIHSDK---IKAIGRLHKLISTKKPR---------------------IVF------ERGIGFL--LYHILNEITR 167 (339)
T ss_dssp TTEEEEEESSC---CHHHHHHHHHSSSSSSC---------------------CCC------CSCHHHH--HHHHHHHHHH
T ss_pred CCeeEEeecCC---cchhHHHHHHHHcCCCc---------------------ccc------ccCHHHH--HHHHHHHHHH
Confidence 99999998765 36789999998754210 000 1112222 2356777777
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhhhh
Q 013287 209 VVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQ 288 (446)
Q Consensus 209 ~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~~~ 288 (446)
.+...++ .+++.++.+++++....+...++++..+|+++..+++.+.+.|+++..+.+.+... ++
T Consensus 168 ~~~~~l~----~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~----~~------- 232 (339)
T 4ev6_A 168 SYSRILM----NLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPI----TT------- 232 (339)
T ss_dssp HHHHHHH----HHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTT----BC-------
T ss_pred HHHHHHH----HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccc----cc-------
Confidence 7666554 56677777777766666777899999999999999999999999999988764321 01
Q ss_pred hhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013287 289 QAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYIDDTEDYVN 367 (446)
Q Consensus 289 ~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i~~~~~~i~ 367 (446)
.-...||+|+ |++.+.++.++.+.+.+..+.+
T Consensus 233 -----------------------------------------------~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d 265 (339)
T 4ev6_A 233 -----------------------------------------------KEDRENFEDLYYDTLQLIDMSATYREVLTSMMD 265 (339)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0135688898 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013287 368 IQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLY-ETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL 444 (446)
Q Consensus 368 i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e-~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl 444 (446)
.+++..+|++|++|++||++|++|+|+|||||+|||||++||| +|+||||+++++|+++| +++++||||||||
T Consensus 266 ~~~s~is~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~----~~~~~~fkrk~WL 339 (339)
T 4ev6_A 266 ITLSLENIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVII----MIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHH----HHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHH----HHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999998 99999999998876544 5789999999997
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=3.9e-18 Score=167.44 Aligned_cols=222 Identities=15% Similarity=0.152 Sum_probs=170.2
Q ss_pred CCCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeEe-----------eccceeeEE
Q 013287 60 AGGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMVV-----------NLEFIKAIV 127 (446)
Q Consensus 60 ~~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIlv-----------nle~IraII 127 (446)
...+..|+++.+..+.++ ..|++.||||+..++. +++ .++|++...++.+++ ..+++.+++
T Consensus 46 ~d~~~vWIdl~~Pt~eEl-----~~l~~~f~lh~l~leD~l~~--~~rpKie~~~d~~fivl~~~~~~~~~~t~~v~i~l 118 (280)
T 4egw_A 46 EDYRLIWIDCYDPKDEEL-----YKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYI 118 (280)
T ss_dssp TSSSCEEEEEESCCHHHH-----HHHHHHHTCCHHHHHHHTCT--TCCCEEECCSSSEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCCeEEEEEeCCCCHHHH-----HHHHHHHCcCHHHHHHHhCc--ccCceEEEECCEEEEEEEeccccccceeeeEEEEE
Confidence 345688999999887664 3899999999999997 777 889999988886553 345899999
Q ss_pred ecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHHH
Q 013287 128 TSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIAL 207 (446)
Q Consensus 128 ~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~iL 207 (446)
+.++|++|+.... +.++.+++|+...... .. ...+.+++- +.++|.++
T Consensus 119 ~~~~lITv~~~~~---~~~~~v~~~l~~~~~~---------------------~~------~~~g~~~ll--~~lld~iv 166 (280)
T 4egw_A 119 KNNLLLTIHSDKI---KAIGRLHKLISTKKPR---------------------IV------FERGIGFLL--YHILNEIT 166 (280)
T ss_dssp ETTEEEEEESSCC---HHHHHHHHHHHHSCCS---------------------SS------CTTTTTHHH--HHHHHHHH
T ss_pred ECCEEEEEecCCc---chHHHHHHHHHhcCcc---------------------cc------cccCHHHHH--HHHHHHHH
Confidence 9999999987753 6789999988643210 00 012234443 47889999
Q ss_pred HHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhhh
Q 013287 208 EVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQN 287 (446)
Q Consensus 208 ~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~~ 287 (446)
+.+...++ .+++.+..+.+.+....+...+.++..+|+++..+++.+++.|+++..+.+.+... ++
T Consensus 167 d~y~~~l~----~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~----~~------ 232 (280)
T 4egw_A 167 RSYSRILM----NLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPI----TT------ 232 (280)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS----CC------
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccc----CC------
Confidence 98888776 46777777778777777777899999999999999999999999999998874321 11
Q ss_pred hhhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 013287 288 QQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYIDDTEDYV 366 (446)
Q Consensus 288 ~~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i~~~~~~i 366 (446)
.-...||+|+ ||+.+.++.++.+.+.+..++
T Consensus 233 ------------------------------------------------~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~ 264 (280)
T 4egw_A 233 ------------------------------------------------KEDRENFEDLYYDTLQLIDMSATYREVLTSMM 264 (280)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1136799999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013287 367 NIQLDNQRNELIQLQL 382 (446)
Q Consensus 367 ~i~Ld~~rN~l~~~~~ 382 (446)
+.+++..+|++|++||
T Consensus 265 d~~~s~is~~~N~iMK 280 (280)
T 4egw_A 265 DITLSLENIKMNQIMK 280 (280)
T ss_dssp HHHHHHCC--------
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999997
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.60 E-value=3.7e-14 Score=137.44 Aligned_cols=209 Identities=11% Similarity=0.123 Sum_probs=154.6
Q ss_pred CCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeEe--------------eccceee
Q 013287 61 GGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMVV--------------NLEFIKA 125 (446)
Q Consensus 61 ~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIlv--------------nle~Ira 125 (446)
++...|+++++....+ + ..|.+.||||+..++. ++. .++|++...++.+++ ..+++++
T Consensus 39 ~~~~~Wi~l~~p~~~e-~----~~l~~~~~l~~l~~ed~~~~--~~rpk~e~~~~~~fivl~~~~~~~~~~~~~~~~v~~ 111 (264)
T 3nvo_A 39 SQHPCWLHLNYTHPDS-A----RWLASTPLLPNNVRDALAGE--SSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRL 111 (264)
T ss_dssp TTSCEEEEEETTSHHH-H----HHHHHCTTSCTTTHHHHTTC--CCSCEEEEETTEEEEEEECC----------CCEEEE
T ss_pred CCCCEEEEeCCCCHHH-H----HHHHhccCCCHHHHHHHhCC--CCCCceEEECCEEEEEEEecccCCCCCCcceEEEEE
Confidence 5568999999966544 3 3899999999999997 555 789999998887654 2458999
Q ss_pred EEecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHH
Q 013287 126 IVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEI 205 (446)
Q Consensus 126 II~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~ 205 (446)
+++.++|++|.... .+.++.+++|+..... ..+..+ +-+.+++.
T Consensus 112 ~l~~~~lITv~~~~---~~~~~~v~~rl~~~~~-------------------------------~~~~~~--ll~~lld~ 155 (264)
T 3nvo_A 112 YMDERFIVSTRQRK---VLALDDVVSDLQEGTG-------------------------------PVDCGG--WLVDVCDA 155 (264)
T ss_dssp EECSSEEEEEESSC---CHHHHHHHHHHHTTCS-------------------------------CSSHHH--HHHHHHHH
T ss_pred EEeCCEEEEEecCC---cCcHHHHHHHHHhCCC-------------------------------CCCHHH--HHHHHHHH
Confidence 99999999998765 3689999999864310 011223 34578888
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhh
Q 013287 206 ALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRI 285 (446)
Q Consensus 206 iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~ 285 (446)
+++.+...++ .+++.+..+++.+..+ +...+.+|..+|+++..+++.+++.|+++..+.+.+... +.
T Consensus 156 ivd~y~~~l~----~l~~~id~lE~~l~~~-~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~----~~---- 222 (264)
T 3nvo_A 156 LTDHASEFIE----ELHDKIIDLEDNLLDQ-QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW----MS---- 222 (264)
T ss_dssp HHHHHHHHHH----HHHHHHHHHTTC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTT----SC----
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCcc----CC----
Confidence 8888777665 4555555555555555 566789999999999999999999999999999875321 11
Q ss_pred hhhhhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 013287 286 QNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYIDDTED 364 (446)
Q Consensus 286 ~~~~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i~~~~~ 364 (446)
.-...||+|+ ||+.+.++.++.+.+.+..
T Consensus 223 --------------------------------------------------~~~~~~l~Dv~d~~~~~~e~~~~~re~l~~ 252 (264)
T 3nvo_A 223 --------------------------------------------------DDHRRRMQDIADRLGRGLDEIDACIARTGI 252 (264)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1147799999 9999998888888888777
Q ss_pred HHHHHHHHHHHHHHH
Q 013287 365 YVNIQLDNQRNELIQ 379 (446)
Q Consensus 365 ~i~i~Ld~~rN~l~~ 379 (446)
+.+ ..+|++|+
T Consensus 253 l~d----~~~s~~~e 263 (264)
T 3nvo_A 253 MAD----EIAQVMQE 263 (264)
T ss_dssp HHH----HHHHHHHT
T ss_pred HHH----HHHHHhcc
Confidence 766 55666653
No 6
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.55 E-value=9.7e-14 Score=133.67 Aligned_cols=204 Identities=9% Similarity=0.099 Sum_probs=152.2
Q ss_pred EEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecC-eeEe--e------------ccceeeEEe
Q 013287 65 LWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREK-AMVV--N------------LEFIKAIVT 128 (446)
Q Consensus 65 ~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~-aIlv--n------------le~IraII~ 128 (446)
.|+.+++....+ + ..|.+. |||+..++. ++. .++|++...++ ++++ + ...++++++
T Consensus 32 ~Wi~l~~p~~~e-~----~~l~~~-~l~~l~~ed~l~~--~~rpk~e~~~d~~lfivl~~~~~~~~~~~~~~~~l~i~l~ 103 (252)
T 3ck6_A 32 HWYHCERLHPDI-R----GWLEDN-HVPRATVDHLLAD--ESRPSFHPLDDDNFMLILRGINMNENASPEDMLSIRILYF 103 (252)
T ss_dssp EEEEEETTCTTH-H----HHHHHT-TCCHHHHHHHHCS--SCCCEEEECSTTCEEEEEEECCCSTTCCTTSCEEEEEEEE
T ss_pred EEEEecCCCHHH-H----HHHHHc-CCCHHHHHHHhCC--CCCCceEEeCCceEEEEEecCccCCCCCcccEEEEEEEEe
Confidence 999999977544 3 378999 999999997 666 88999999999 7743 2 123677999
Q ss_pred cCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHHHH
Q 013287 129 SQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALE 208 (446)
Q Consensus 129 ~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~iL~ 208 (446)
.++|++|.... .+.|+.+++|+..... ..+..+ |-+.++|.+++
T Consensus 104 ~~~lITvr~~~---~~~~~~v~~~l~~~~~-------------------------------~~~~~~--ll~~lld~ivd 147 (252)
T 3ck6_A 104 QGALISTRKIP---SRAIMEIRQALAEHKG-------------------------------PKSLAS--LLNQIIEGLNG 147 (252)
T ss_dssp TTEEEEEESSC---CHHHHHHHHHHHTTCS-------------------------------CSSHHH--HHHHHHHHHHH
T ss_pred CCEEEEEeCCC---cchHHHHHHHHHhCCC-------------------------------CCCHHH--HHHHHHHHHHH
Confidence 99999998775 3678999999853210 001122 34477888888
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhhhh
Q 013287 209 VVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQ 288 (446)
Q Consensus 209 ~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~~~ 288 (446)
.+...++ .+++.++.+++. ...+.+|+.+|+++..+++.++|.|+++..+.+.+..+ ..
T Consensus 148 ~y~~~l~----~l~~~id~lE~~------~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~-----~~------ 206 (252)
T 3ck6_A 148 KIDLYLD----TIEETLNEFDVN------DESTYNHIAAQKALISIKRFIRPQQYAIRDLIESESEL-----VT------ 206 (252)
T ss_dssp HHHHHHH----HHHHHHHTCCTT------CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----HH------
T ss_pred HHHHHHH----HHHHHHHHHHcC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CH------
Confidence 8777665 355554444333 23567899999999999999999999999999874221 10
Q ss_pred hhhcCCCCCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013287 289 QAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYIDDTEDYVN 367 (446)
Q Consensus 289 ~~~~~~~~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i~~~~~~i~ 367 (446)
-...||+|+ ||+.+.++.++.+++.+..+.+
T Consensus 207 ------------------------------------------------~~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d 238 (252)
T 3ck6_A 207 ------------------------------------------------SRPHQYRFAHNNITRINETIEFYLGEVALFQD 238 (252)
T ss_dssp ------------------------------------------------TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 026799999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013287 368 IQLDNQRNELIQLQ 381 (446)
Q Consensus 368 i~Ld~~rN~l~~~~ 381 (446)
.+++..+|++|++|
T Consensus 239 ~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 239 EIKHNRDEKTNKNS 252 (252)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHccCC
Confidence 99999999999976
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.38 E-value=2.1e-12 Score=125.41 Aligned_cols=169 Identities=15% Similarity=0.219 Sum_probs=122.3
Q ss_pred CCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeE--e------------eccceee
Q 013287 61 GGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMV--V------------NLEFIKA 125 (446)
Q Consensus 61 ~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIl--v------------nle~Ira 125 (446)
++...|+++++.++.+.++ .|++.||||+..++. ++. .++|++...+++++ + ..+++.+
T Consensus 59 ~~~~~Wi~l~~p~~~~e~~----~l~~~f~l~~l~~ed~l~~--~~rpk~e~~~d~lfivl~~~~~~~~~~~~~~~~v~~ 132 (269)
T 2bbh_A 59 SSTPTWINITGIHRTDVVQ----RVGEFFGTHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSL 132 (269)
T ss_dssp CSSCEEEEEECTTCHHHHH----HHHHHHTCCHHHHHHHHCT--TCCCEEEECSSEEEEEEEEEECCC--CCCEEEEEEE
T ss_pred CCCeEEEEecCCCCHHHHH----HHHHHcCCCHhHHHHHhCc--CCCceEEEECCEEEEEEEeeeecCCcCceeEEEEEE
Confidence 4468999999986555553 899999999999997 666 78999999888663 2 2346899
Q ss_pred EEecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHH
Q 013287 126 IVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEI 205 (446)
Q Consensus 126 II~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~ 205 (446)
+++.++|++|..... +.++.+++|+.... + ..+ ..+.+++ -+.++|.
T Consensus 133 ~l~~~~lITv~~~~~---~~~~~v~~rl~~~~-----~----------------~~~-------~~~~~~l--l~~lld~ 179 (269)
T 2bbh_A 133 ILTKNCVLMFQEKIG---DVFDPVRERIRYNR-----G----------------IIR-------KKRADYL--LYSLIDA 179 (269)
T ss_dssp EEETTEEEEEESSSC---CSCHHHHHHHHTTC-----T----------------TGG-------GSCHHHH--HHHHHHH
T ss_pred EEECCEEEEEECCCC---CcHHHHHHHHHhcC-----C----------------chh-------hCCHHHH--HHHHHHH
Confidence 999999999987653 46788888886431 0 010 1122333 3478888
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 206 ALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDN 272 (446)
Q Consensus 206 iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd 272 (446)
+++.+...++ .+++.++.+.+.+....+...+.+|..+|+++..+++.+++.|+++..+.+.+
T Consensus 180 ivd~y~~~l~----~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 180 LVDDYFVLLE----KIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888887665 35555555555555444456799999999999999999999999999999864
No 8
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.34 E-value=7.4e-12 Score=121.49 Aligned_cols=167 Identities=14% Similarity=0.183 Sum_probs=128.0
Q ss_pred CCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeE--e---------eccceeeEEe
Q 013287 61 GGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMV--V---------NLEFIKAIVT 128 (446)
Q Consensus 61 ~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIl--v---------nle~IraII~ 128 (446)
++...|+++++.++.+.++ .|++.||||+..++. ++. .++|++...+++++ + ..++|.++++
T Consensus 64 ~~~~~Wi~l~~p~~~~e~~----~l~~~f~l~~l~~ed~l~~--~~rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l~ 137 (266)
T 2hn1_A 64 LNKKLWIDVVGVHDESLIA----KICEFLGIHPLAAEDILNT--AQRVKIEDYDDHLFLVLKILLYNETLEIDQLSLVLK 137 (266)
T ss_dssp TTSEEEEEECCCCCHHHHH----HHHHTTTCCHHHHHHHHBT--TCCSEEEECSSEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred CCCeEEEEeCCCCCHHHHH----HHHHHcCCCHhHHHHHhCC--CCCCeEEEECCEEEEEEEeccccCccceEEEEEEEE
Confidence 4568999999986555553 899999999999997 666 88999999888763 2 3457899999
Q ss_pred cCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHHHH
Q 013287 129 SQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALE 208 (446)
Q Consensus 129 ~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~iL~ 208 (446)
.|+|++|..... +.++.+++|+..... .+ ..+.+++ -+.++|.+++
T Consensus 138 ~~~lITv~~~~~---~~~~~v~~rl~~~~~----------------------~~-------~~~~~~l--l~~lld~ivd 183 (266)
T 2hn1_A 138 KNLVATFEEREY---WILDSIRSRLKSGGR----------------------MR-------KLAGDYL--AYTILDAVVD 183 (266)
T ss_dssp TTEEEEEESSSS---CSTHHHHHHHHSSSH----------------------HH-------HSCHHHH--HHHHHHHHHH
T ss_pred CCEEEEEEcCCC---ChHHHHHHHHHhCCc----------------------hh-------hcCHHHH--HHHHHHHHHH
Confidence 999999987653 457889998864200 00 0112233 2467888888
Q ss_pred HHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 209 VVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDN 272 (446)
Q Consensus 209 ~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd 272 (446)
.+...++ .+++.++.+++.+....+ ..+.+|..+|+++..+++.+++.|++++.+.+.+
T Consensus 184 ~y~~~l~----~i~~~id~lE~~l~~~~~-~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (266)
T 2hn1_A 184 SYFEALL----KISDEIEVLEDEVVSGDS-TLIGKIHSLKREILAFRNAVWPLRDVLSFFTRVE 242 (266)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHH----HHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8777665 467777777777766556 7789999999999999999999999999999874
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=95.92 E-value=0.23 Score=49.18 Aligned_cols=94 Identities=9% Similarity=0.038 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchH--HHHHH
Q 013287 345 LDGTRNKILSVREYIDDTEDYVNIQLDNQRNELI-QLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIF--EIFVG 421 (446)
Q Consensus 345 ~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN~l~-~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f--~~v~~ 421 (446)
+.++...+..+.+.++...+.++..+|...+.++ +...++-++|++-++....+=+-|. |.+-++.-|..- |.+++
T Consensus 239 l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi-yGMNf~~mPel~~~~gy~~ 317 (339)
T 4ev6_A 239 FEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI-YGMNFSYLPLANNPQGFWL 317 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH-TTCCCSCCTTSSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCcCCCCCCccCchHHHH
Confidence 4666666666666666666666666666655553 5666666666666666666666662 233333456543 34443
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 013287 422 STTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 422 ~~~~~~~~i~~~~~~yfrrk~w 443 (446)
++++++++.++.+++-|+
T Consensus 318 ----~l~~m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 318 ----VMALMVVIIMIFVYIFRR 335 (339)
T ss_dssp ----HHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 233455667776666555
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=94.91 E-value=0.2 Score=50.12 Aligned_cols=102 Identities=7% Similarity=0.027 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCch
Q 013287 337 LLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNEL-IQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGI 415 (446)
Q Consensus 337 Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN~l-~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~ 415 (446)
+-+.--..+.++...+..+.+.++...+.++..+|...+.+ ++...++-++|++-++....+=+-|. |.+-++..|..
T Consensus 255 ~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGi-yGMNf~~mPel 333 (363)
T 2iub_A 255 IEKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGI-YGMNFEYMPEL 333 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccCCCCCcc
Confidence 33333334577787788887888888888888888876554 66778888888888888888888884 44444456754
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 416 FEI--FVGSTTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 416 f~~--v~~~~~~~~~~i~~~~~~yfrrk~w 443 (446)
-|. +++ ++++++++.+..+++-|+
T Consensus 334 ~~~~Gy~~----~l~~m~~i~~~~~~~Fkr 359 (363)
T 2iub_A 334 RWKWGYPV----VLAVMGVIAVIMVVYFKK 359 (363)
T ss_dssp -----CHH----HHHHHHHHHHHHHTTTTS
T ss_pred cCcHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 443 333 234455667776666554
No 11
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=82.73 E-value=9.2 Score=34.68 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 013287 330 DVEDLEMLLEAYFMQL-DGTRNKILSVREYI 359 (446)
Q Consensus 330 ~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i 359 (446)
..|++..-+.+|..++ ..+...++.++..+
T Consensus 129 ~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l 159 (191)
T 1nfn_A 129 STEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3445555567777766 56665655555443
No 12
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=65.72 E-value=73 Score=30.33 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 013287 330 DVEDLEMLLEAYFMQL-DGTRNKILSVREYI 359 (446)
Q Consensus 330 ~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i 359 (446)
+.+++..-+.+|..++ +.+.+.+++++..+
T Consensus 89 ~~eeLr~~L~p~~eelr~kl~~~veelk~~L 119 (273)
T 3s84_A 89 NADSLQASLRPHADELKAKIDQNVEELKGRL 119 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4566666777888877 66666666665443
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=61.28 E-value=10 Score=26.26 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhcC
Q 013287 429 LLFLLVLGYARWKK 442 (446)
Q Consensus 429 ~i~~~~~~yfrrk~ 442 (446)
+++++.++|+|||+
T Consensus 26 ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 26 VVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhH
Confidence 34455566666664
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.12 E-value=81 Score=32.90 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 332 EDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDN 372 (446)
Q Consensus 332 eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~ 372 (446)
+.|+.-+..-+.++..+.+.|+.+...|..+|--|++++..
T Consensus 120 qyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 120 EVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444555666666677777777777777777654
No 15
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=60.29 E-value=7.3 Score=26.05 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=3.8
Q ss_pred HHHHHHHhc
Q 013287 433 LVLGYARWK 441 (446)
Q Consensus 433 ~~~~yfrrk 441 (446)
++.+|++||
T Consensus 29 ~l~~~~~rr 37 (38)
T 2k1k_A 29 GILVFRSRR 37 (38)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHeec
Confidence 333444444
No 16
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=59.29 E-value=27 Score=30.89 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=22.2
Q ss_pred CCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 013287 327 DDNDVEDLEMLLEAYFMQL-DGTRNKILSVREYI 359 (446)
Q Consensus 327 ~~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i 359 (446)
.....|++..-+++|++++ ..+...++.|+..+
T Consensus 126 l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 126 LGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3445677778888888887 66666666665443
No 17
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=58.96 E-value=9.8 Score=26.33 Aligned_cols=13 Identities=31% Similarity=0.238 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhcC
Q 013287 430 LFLLVLGYARWKK 442 (446)
Q Consensus 430 i~~~~~~yfrrk~ 442 (446)
++++.++|+|||+
T Consensus 26 i~~~~~~~~RRRr 38 (44)
T 2l2t_A 26 VGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhh
Confidence 4445556666654
No 18
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=57.13 E-value=16 Score=25.25 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhcCc
Q 013287 426 ACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 426 ~~~~i~~~~~~yfrrk~w 443 (446)
+.+++.++..+|+|||+.
T Consensus 23 l~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhheehhhh
Confidence 344555567888888864
No 19
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=56.68 E-value=24 Score=34.35 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 246 SLKSNLTRLLARVQKVRDEIEHLLDDN 272 (446)
Q Consensus 246 ~lK~~L~~l~~~v~~vRe~L~~lL~dd 272 (446)
.+...+..++.++.|.++.+...++.+
T Consensus 111 ~L~~dlEelR~~L~Py~~el~~~l~~~ 137 (307)
T 2l7b_A 111 RLGADMEDVCGRLVQYRGEVQAMLGQS 137 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888889888888888754
No 20
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=50.79 E-value=33 Score=20.46 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 244 VRSLKSNLTRLLARVQKVRDEIEHL 268 (446)
Q Consensus 244 lr~lK~~L~~l~~~v~~vRe~L~~l 268 (446)
++++|.+..+++..++.+++++.++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 4667888888888888888877654
No 21
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=49.51 E-value=14 Score=24.56 Aligned_cols=7 Identities=0% Similarity=-0.168 Sum_probs=2.7
Q ss_pred HHHHHhc
Q 013287 435 LGYARWK 441 (446)
Q Consensus 435 ~~yfrrk 441 (446)
+++++||
T Consensus 33 ~~~~~rR 39 (41)
T 2k9y_A 33 GFFIHRR 39 (41)
T ss_dssp HHSSSSS
T ss_pred heeEeee
Confidence 3344433
No 22
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=43.73 E-value=22 Score=22.02 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 245 RSLKSNLTRLLARVQKVRDEIEHL 268 (446)
Q Consensus 245 r~lK~~L~~l~~~v~~vRe~L~~l 268 (446)
+.+|++|++++.+|..+-+.|+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 568889999998888887777654
No 23
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=43.52 E-value=74 Score=28.17 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 013287 329 NDVEDLEMLLEAYFMQL-DGTRNKILSVR 356 (446)
Q Consensus 329 ~~~eele~Lle~Y~~~~-d~~~~~i~~l~ 356 (446)
...+++...+.+|..++ +.+.+.+++++
T Consensus 155 ~~~e~lk~~l~Py~ee~k~kl~~~leeLk 183 (185)
T 3r2p_A 155 AHVDALRTHLAPYSDELRQRLAARLEALK 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 34555556666666666 55555555443
No 24
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=41.34 E-value=48 Score=30.44 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 346 DGTRNKILSVREYIDDTEDYVNIQLDNQRN 375 (446)
Q Consensus 346 d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN 375 (446)
.++...+..+.+.++...+.+..-++....
T Consensus 213 rdv~d~~~~~~e~i~~~re~~~~l~d~~~s 242 (252)
T 3ck6_A 213 RFAHNNITRINETIEFYLGEVALFQDEIKH 242 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444444433
No 25
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=41.18 E-value=21 Score=30.24 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=24.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013287 411 ETDGIFEIFVGSTTTACVLLFLLVLGYARWKKL 443 (446)
Q Consensus 411 ~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~w 443 (446)
+..+.+.+++.+|.+.++.++.+|+.|.|-||.
T Consensus 48 ~~~~~ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 48 DGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp TCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 444556666667777777777889999998874
No 26
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=39.75 E-value=1.3e+02 Score=23.59 Aligned_cols=65 Identities=25% Similarity=0.274 Sum_probs=41.4
Q ss_pred HHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcc-hHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Q 013287 207 LEVVCTYLDSSVAELEKDAYPVLDELARNVSTK-NLEHVRSLKSNLTRLLA----RVQKVRDEIEHLLDD 271 (446)
Q Consensus 207 L~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~-~Le~lr~lK~~L~~l~~----~v~~vRe~L~~lL~d 271 (446)
|+.+...++.-+.++.+.+..+++.|..+++.. .|-.++..-++++-++. .+..++|....+|+.
T Consensus 12 Ld~v~~~f~~ga~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~sI~~~ 81 (85)
T 2ca5_A 12 LSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAILEH 81 (85)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888899999999999999999998876553 35666666666665554 556677777777764
No 27
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=39.54 E-value=1.1e+02 Score=26.96 Aligned_cols=7 Identities=0% Similarity=-0.102 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 013287 339 EAYFMQL 345 (446)
Q Consensus 339 e~Y~~~~ 345 (446)
.+|..++
T Consensus 143 ~p~~e~l 149 (185)
T 3r2p_A 143 SPLGEEM 149 (185)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344333
No 28
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=39.42 E-value=1.3e+02 Score=23.06 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013287 245 RSLKSNLTRLLARVQKVRDE 264 (446)
Q Consensus 245 r~lK~~L~~l~~~v~~vRe~ 264 (446)
..||+++..+..++.++++.
T Consensus 35 ~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 35 QKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCC
Confidence 45889999999888875543
No 29
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=36.23 E-value=1.5e+02 Score=23.66 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=44.0
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 206 ALEVVCTYLDSSVAELEKDAYPVLDELARNVST-KNLEHVRSLKSNLTRLLARVQKVRDE 264 (446)
Q Consensus 206 iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~-~~Le~lr~lK~~L~~l~~~v~~vRe~ 264 (446)
.|+.+...++..+.++.+.+..+++++..+++. ..|-.++..-.+++-++..-.-+-.+
T Consensus 17 ~Ld~vs~~f~~~a~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQSntiKa 76 (92)
T 2g0u_A 17 YLTGIGRAFDDGVKDLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAVKS 76 (92)
T ss_dssp HHHHHHGGGCTTTHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999877655 34677777777777665543333333
No 30
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=35.04 E-value=1.7e+02 Score=24.60 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 199 EFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELAR-NVSTKNLEHVRSLKSNLTRLLARVQKVRDEI 265 (446)
Q Consensus 199 Ef~~LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~-~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L 265 (446)
|+.-+-.=|.+.|..++..+++|++.+.-+...-.+ +++.. .|..=|+-+..++..|..+++.|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~---Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAG---DLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666667888888888888888877544322111 12222 23344555666666666666654
No 31
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=34.96 E-value=62 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=9.0
Q ss_pred chHHHHHHHHHHHHHH
Q 013287 330 DVEDLEMLLEAYFMQL 345 (446)
Q Consensus 330 ~~eele~Lle~Y~~~~ 345 (446)
+.+++..-+++|..++
T Consensus 107 dlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 107 DMEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHH
Confidence 4455555566666555
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.43 E-value=1.2e+02 Score=31.61 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013287 255 LARVQKVRD 263 (446)
Q Consensus 255 ~~~v~~vRe 263 (446)
+++++-+++
T Consensus 116 RRrIqyLKe 124 (562)
T 3ghg_A 116 RSRIEVLKR 124 (562)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 33
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.40 E-value=1.8e+02 Score=23.33 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=26.0
Q ss_pred ccchHHHHHHHHHHHHHhhhhhHHHHHHhhHHH
Q 013287 195 ELPFEFQVLEIALEVVCTYLDSSVAELEKDAYP 227 (446)
Q Consensus 195 ~LPfEf~~LE~iL~~v~~~Le~~~~~Le~~~~~ 227 (446)
.|-.-|.=|...++.+-..|+.++++|+.++..
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~ 65 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKEIDQ 65 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566889999999999999999998888654
No 34
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=31.85 E-value=18 Score=23.79 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhcC
Q 013287 429 LLFLLVLGYARWKK 442 (446)
Q Consensus 429 ~i~~~~~~yfrrk~ 442 (446)
++.++...|.|||+
T Consensus 22 ii~l~~~~~iRRr~ 35 (35)
T 1iij_A 22 ILVVVVGILIKRRR 35 (35)
T ss_dssp HHTTTTTHHHHHCC
T ss_pred HHHHHhheEEeecC
Confidence 34445677888875
No 35
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.40 E-value=56 Score=23.51 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=4.4
Q ss_pred HHHHhcC
Q 013287 436 GYARWKK 442 (446)
Q Consensus 436 ~yfrrk~ 442 (446)
.||||++
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 5666665
No 36
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=30.33 E-value=5.3e+02 Score=27.49 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013287 242 EHVRSLKSNLTRLLARVQKVRDEIEHLLD 270 (446)
Q Consensus 242 e~lr~lK~~L~~l~~~v~~vRe~L~~lL~ 270 (446)
+++..++..+..+++..+.+++.+.+..+
T Consensus 366 ~~l~~~~~~~~~l~~~~~~~~~~l~~~~~ 394 (695)
T 2j69_A 366 KRIDSVEPEFNKLTGIRDEFQKEIINTRD 394 (695)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666655554
No 37
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=29.74 E-value=58 Score=30.32 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=16.7
Q ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 013287 329 NDVEDLEMLLEAYFMQL-DGTRNKILSVRE 357 (446)
Q Consensus 329 ~~~eele~Lle~Y~~~~-d~~~~~i~~l~~ 357 (446)
...+++..-+++|..++ ..+.+.++++++
T Consensus 154 ~~veelk~~l~P~~ee~r~kl~~~~~el~~ 183 (243)
T 2a01_A 154 AHVDALRTHLAPYSDELRQRLAARLEALKE 183 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34555666666666666 555555555554
No 38
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} PDB: 3iz1_A 3iz2_A
Probab=28.99 E-value=1.5e+02 Score=27.52 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHH---hh-cccCCCCCC--CCC---------------chHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013287 382 LILTIASFAIAANTLIAG---IF-GMNIPCQLY--ETD---------------GIFEIFVGSTTTACVLLFLLVLGYARW 440 (446)
Q Consensus 382 ~~LTi~s~i~~p~t~IaG---if-GMN~~~~~e--~~~---------------~~f~~v~~~~~~~~~~i~~~~~~yfrr 440 (446)
.+++++.=++.=.+|+.| +| |++++.-.. .+| ..|.++..++.++|+++.++=++|.-+
T Consensus 136 Yi~~l~~R~~~E~~Fl~~qy~Ly~gf~vp~~y~C~~~PCp~~VdCfvSRPtEKtifl~fM~~vs~lsi~L~v~El~~l~~ 215 (226)
T 2zw3_A 136 YTSSIFFRVIFEAAFMYVFYVMYDGFSMQRLVKCNAWPCPNTVDCFVSRPTEKTVFTVFMIAVSGICILLNVTELCYLLI 215 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSCCSEEEECCTTSSSSEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccCceEeeCCCCCCCCeeeECCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666778888 88 998863221 122 356666667777888888888888877
Q ss_pred cCc
Q 013287 441 KKL 443 (446)
Q Consensus 441 k~w 443 (446)
|++
T Consensus 216 k~~ 218 (226)
T 2zw3_A 216 RYC 218 (226)
T ss_dssp CC-
T ss_pred HHH
Confidence 664
No 39
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=27.60 E-value=1.9e+02 Score=26.83 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013287 249 SNLTRLLARVQKVRDEIE 266 (446)
Q Consensus 249 ~~L~~l~~~v~~vRe~L~ 266 (446)
.++..+++.+-.+|..+.
T Consensus 197 ~~i~~lrr~l~~lrr~l~ 214 (280)
T 4egw_A 197 EKILGLRKTLVYFHKSLI 214 (280)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555555555555544
No 40
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=27.31 E-value=1.1e+02 Score=20.77 Aligned_cols=13 Identities=0% Similarity=-0.380 Sum_probs=6.1
Q ss_pred CCchHHHHHHHHH
Q 013287 412 TDGIFEIFVGSTT 424 (446)
Q Consensus 412 ~~~~f~~v~~~~~ 424 (446)
.+...|++++..+
T Consensus 6 ~~vp~wiIi~s~l 18 (42)
T 2k1a_A 6 RAIPIWWVLVGVL 18 (42)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCcchHHHHHHHH
Confidence 3445565544333
No 41
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=25.62 E-value=2.6e+02 Score=25.29 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=21.0
Q ss_pred CcchHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 013287 328 DNDVEDLEMLLEAYFMQL-DGTRNKILSVRE 357 (446)
Q Consensus 328 ~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~ 357 (446)
....+++...+.+|..++ +.+-+.++++.+
T Consensus 152 ~~~~e~lk~~l~P~~ee~~~kl~~~leeL~~ 182 (216)
T 2lem_A 152 RTHVDSLRTQLAPHSEQMRESLAQRLAELKS 182 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHhC
Confidence 345667777777888777 677777777765
No 42
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.34 E-value=1.1e+02 Score=25.43 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=49.0
Q ss_pred hHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhhcchhhhhhhh
Q 013287 216 SSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNE-DMAHLYLTRRRIQNQQ 289 (446)
Q Consensus 216 ~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~-dm~~m~Lt~~~~~~~~ 289 (446)
.++..|.+.++.+-..+..-.....-+-+-.++++...+...|..++..=..-|..+. ++..|.+++..++.+|
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~lpFsR~iTK~EQ 84 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQ 84 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSCSEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCccccccHHHH
Confidence 4445555554444444443334444566777888999999999999988887776654 6778888776655444
No 43
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.14 E-value=2.1e+02 Score=21.23 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 240 NLEHVRSLKSNLTRLLARVQKVRDEIEHL 268 (446)
Q Consensus 240 ~Le~lr~lK~~L~~l~~~v~~vRe~L~~l 268 (446)
+-+.++..|.++.++++.++.+.-.|+.+
T Consensus 47 ~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 47 NNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567888999999999999998888765
No 44
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=25.07 E-value=2.4e+02 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=17.4
Q ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 013287 329 NDVEDLEMLLEAYFMQL-DGTRNKILSVR 356 (446)
Q Consensus 329 ~~~eele~Lle~Y~~~~-d~~~~~i~~l~ 356 (446)
.+.|++..-+++|..++ +.+...++.++
T Consensus 110 ~~~eelr~~L~P~~eel~~~~~~~~eel~ 138 (243)
T 2a01_A 110 EEMELYRQKVEPLRAELQEGARQKLHELQ 138 (243)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666677777777 55555555543
No 45
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=24.73 E-value=54 Score=28.84 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHHHHH
Q 013287 330 DVEDLEMLLEAYFMQL 345 (446)
Q Consensus 330 ~~eele~Lle~Y~~~~ 345 (446)
+.+++..-++.|..++
T Consensus 107 d~EelR~~l~p~~~el 122 (165)
T 1gs9_A 107 DMEDVRGRLVQYRGEV 122 (165)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555556666666554
No 46
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.37 E-value=61 Score=25.01 Aligned_cols=15 Identities=33% Similarity=0.173 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 013287 422 STTTACVLLFLLVLG 436 (446)
Q Consensus 422 ~~~~~~~~i~~~~~~ 436 (446)
+++++.+++.++++.
T Consensus 16 gvi~gilliGlllll 30 (79)
T 2knc_B 16 SVMGAILLIGLAALL 30 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 47
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=24.20 E-value=1.4e+02 Score=19.41 Aligned_cols=29 Identities=14% Similarity=-0.051 Sum_probs=14.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 410 YETDGIFEIFVGSTTTACVLLFLLVLGYA 438 (446)
Q Consensus 410 e~~~~~f~~v~~~~~~~~~~i~~~~~~yf 438 (446)
|+++.|-+..+.+..+..++.+.+++..|
T Consensus 2 E~~l~GTl~~V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 2 EEKPKGALAVILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccceehHHHHHHHHHHHHHHHHHeee
Confidence 45666666665554444444444555444
No 48
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=24.01 E-value=3.4e+02 Score=23.21 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=20.9
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHhh
Q 013287 206 ALEVVCTYLDSSVAELEKDAYPVLDELAR 234 (446)
Q Consensus 206 iL~~v~~~Le~~~~~Le~~~~~vld~L~~ 234 (446)
-|..-+..|-.++.+|++.++.+-.+...
T Consensus 18 kL~~~sd~LvtkVDDLQD~VE~LRkDV~~ 46 (141)
T 3okq_A 18 ELGDLSDTLLSKVDDLQDVIEIMRKDVAE 46 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 37777777778888888887776666654
No 49
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.66 E-value=2.9e+02 Score=26.38 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 202 VLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEH 267 (446)
Q Consensus 202 ~LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~ 267 (446)
.||++-......+-.++.+|-..+..+..+|.. .+..+-.++..|..+|..+...+..
T Consensus 25 eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~--------e~~~~~~R~~~L~~RI~~L~~~v~~ 82 (279)
T 3p8c_D 25 ELECVTNISLANIIRQLSSLSKYAEDIFGELFN--------EAHSFSFRVNSLQERVDRLSVSVTQ 82 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 366666555555556777888888888888864 3444556666666666666666653
No 50
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.46 E-value=3e+02 Score=23.74 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHH---HHHHHhhc--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 202 VLEIALEVVCTYLDSSVAELEKDAYP---VLDELARN--VSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDD 271 (446)
Q Consensus 202 ~LE~iL~~v~~~Le~~~~~Le~~~~~---vld~L~~~--v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~d 271 (446)
-|...++..|..|+++...|+.++.. +...|..- .-...+......-+++.....+|..+|..|...+.+
T Consensus 72 ~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 72 RLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555555555555544432 22222110 001112222333345555556777777777777665
No 51
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.40 E-value=1.4e+02 Score=21.46 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=4.6
Q ss_pred HHHHhcC
Q 013287 436 GYARWKK 442 (446)
Q Consensus 436 ~yfrrk~ 442 (446)
.||||++
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 5677765
No 52
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.85 E-value=5.8e+02 Score=26.13 Aligned_cols=106 Identities=8% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhhhhhhhcCCCCCCCCCCCccchh
Q 013287 229 LDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPGPAASNSIVPKASH 308 (446)
Q Consensus 229 ld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~~~~~N~~~~~~~~ 308 (446)
+..+..+.......+|..||++|..+.+.-+..-..+..+.+-
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~------------------------------------- 94 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINI------------------------------------- 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHH-------------------------------------
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH-------------------------------------
Q ss_pred hhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 309 LRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIAS 388 (446)
Q Consensus 309 l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN~l~~~~~~LTi~s 388 (446)
......+..+.-..|.+-.+++..+++.|++.++..-..+.+--++++|+..+|.+.=..|.
T Consensus 95 ------------------lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 95 ------------------LKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 013287 389 F 389 (446)
Q Consensus 389 ~ 389 (446)
+
T Consensus 157 ~ 157 (491)
T 1m1j_A 157 I 157 (491)
T ss_dssp H
T ss_pred H
No 53
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.21 E-value=3.2e+02 Score=21.66 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013287 241 LEHVRSLKSNLTRLLARVQKVR 262 (446)
Q Consensus 241 Le~lr~lK~~L~~l~~~v~~vR 262 (446)
..+|+..|++|..+++.+..++
T Consensus 73 ~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 73 SNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776666655433
No 54
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=20.14 E-value=3.9e+02 Score=27.66 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCch
Q 013287 199 EFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVR-----DEIEHLLDDNE 273 (446)
Q Consensus 199 Ef~~LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vR-----e~L~~lL~dd~ 273 (446)
++..||.++..+......+-..|......+..+- ..-+.+.-.-+..+++++..|+..|..-| |+|+++++--.
T Consensus 147 q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~-~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~~EEAIqe~~dmsa 225 (526)
T 3iyk_A 147 QFDILNKAVTSYNKILTEEDLQMRRLATALQKEI-GERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTA 225 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchH
Confidence 5678999999888888777766655543333222 22233344456778888888888887654 45666666655
Q ss_pred hh
Q 013287 274 DM 275 (446)
Q Consensus 274 dm 275 (446)
|+
T Consensus 226 eI 227 (526)
T 3iyk_A 226 DV 227 (526)
T ss_pred HH
Confidence 54
Done!