Query 013287
Match_columns 446
No_of_seqs 227 out of 1533
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 07:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013287.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013287hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 99.7 1.6E-18 1.1E-22 131.7 4.5 63 376-442 1-64 (64)
2 d2bbha1 d.328.1.1 (A:13-244) M 99.5 2.3E-14 1.7E-18 134.0 12.9 174 59-275 42-230 (232)
3 d1lrza1 a.2.7.4 (A:245-309) Me 85.9 2.7 0.0002 29.8 8.8 61 207-267 1-62 (65)
4 d1ppjd2 f.23.11.1 (D:196-241) 69.0 1.7 0.00012 28.8 2.9 16 428-443 17-32 (46)
5 d1gs9a_ a.24.1.1 (A:) Apolipop 65.5 8.6 0.00063 30.8 7.5 32 328-359 106-138 (144)
6 d1j8ca_ d.15.1.1 (A:) Ubiquiti 49.8 18 0.0013 27.1 6.4 18 82-99 58-75 (103)
7 d3cx5d2 f.23.11.1 (D:261-307) 46.1 7.3 0.00053 25.7 2.9 14 430-443 19-32 (47)
8 d1lvfa_ a.47.2.1 (A:) Syntaxin 34.8 69 0.0051 23.9 7.7 64 199-266 39-104 (106)
9 d1ez3a_ a.47.2.1 (A:) Syntaxin 32.7 88 0.0064 23.5 8.3 34 336-369 3-36 (124)
10 d1ez3a_ a.47.2.1 (A:) Syntaxin 27.7 1.1E+02 0.0083 22.8 12.2 54 331-384 47-109 (124)
11 d2g0ua1 a.2.20.1 (A:1-84) BsaL 24.4 1.2E+02 0.0087 21.9 7.9 62 206-267 17-79 (84)
12 d3dtub2 f.17.2.1 (B:30-129) Ba 24.4 30 0.0022 25.7 3.7 7 401-407 10-16 (100)
13 d1vcsa1 a.47.2.1 (A:8-96) Vesi 23.2 1.3E+02 0.0091 21.7 7.1 23 240-262 65-87 (89)
14 d1wa8b1 a.25.3.1 (B:602-695) E 20.4 1.3E+02 0.0097 21.2 6.8 30 200-229 7-39 (94)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=99.71 E-value=1.6e-18 Score=131.68 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287 376 ELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLY-ETDGIFEIFVGSTTTACVLLFLLVLGYARWKK 442 (446)
Q Consensus 376 ~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e-~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~ 442 (446)
|+|++|++||++|++|+|+|+|||+||||++++|+ +++++||++++++++ +++++++||||||
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~----~~~~~~~~f~rkk 64 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGV----IAVIMVVYFKKKK 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHH----HHHHHHTTTTSCC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHH----HHHHHHHHHhccC
Confidence 57889999999999999999999999999998777 999999999887654 4457789999987
No 2
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.53 E-value=2.3e-14 Score=133.96 Aligned_cols=174 Identities=14% Similarity=0.212 Sum_probs=131.7
Q ss_pred cCCCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhh-hCCCCCccceeEeecCeeEe--------------eccce
Q 013287 59 KAGGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRI-LGPVFSHSSNILAREKAMVV--------------NLEFI 123 (446)
Q Consensus 59 ~~~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aIlv--------------nle~I 123 (446)
.+.+...|++|++.++.+.++ .|++.||||+..++. +++ .++|++...++++++ ...++
T Consensus 42 ~~~~~~~Widi~~~~~~e~l~----~l~~~f~i~~l~led~l~~--~~rpk~e~~~~~~fiil~~~~~~~~~~~~~~~~l 115 (232)
T d2bbha1 42 RDSSTPTWINITGIHRTDVVQ----RVGEFFGTHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQV 115 (232)
T ss_dssp GGCSSCEEEEEECTTCHHHHH----HHHHHHTCCHHHHHHHHCT--TCCCEEEECSSEEEEEEEEEECCC--CCCEEEEE
T ss_pred cCCCCcEEEEeCCCCCHHHHH----HHHHHcCcCHhHHHHHhCc--ccCCceEEeCCEEEEEEEeecccCCCCcceeEEE
Confidence 456678999999999988765 899999999999997 777 889999999997664 33488
Q ss_pred eeEEecCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHH
Q 013287 124 KAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVL 203 (446)
Q Consensus 124 raII~~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~L 203 (446)
.++++.|+|++|+.... ++++.+++|+..... . .+ ..+.+++- +.++
T Consensus 116 ~i~l~~~~lITv~~~~~---~~~~~v~~~~~~~~~-----~----------------~~-------~~~~~~ll--~~ll 162 (232)
T d2bbha1 116 SLILTKNCVLMFQEKIG---DVFDPVRERIRYNRG-----I----------------IR-------KKRADYLL--YSLI 162 (232)
T ss_dssp EEEEETTEEEEEESSSC---CSCHHHHHHHHTTCT-----T----------------GG-------GSCHHHHH--HHHH
T ss_pred EEEEECCEEEEEecCCC---chHHHHHHHHHhCcc-----c----------------cc-------cCCHHHHH--HHHH
Confidence 99999999999987653 568888888864321 0 11 12234443 3678
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 013287 204 EIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDM 275 (446)
Q Consensus 204 E~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm 275 (446)
+.+++.+...++ .+++.+..+++.+..+.+...++++..+|+++..+++.+.+.|++|..+.+++.++
T Consensus 163 d~ivd~y~~~l~----~l~~~id~lE~~v~~~~~~~~l~~i~~lrr~l~~lrr~l~p~revl~~L~r~~~~l 230 (232)
T d2bbha1 163 DALVDDYFVLLE----KIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL 230 (232)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 888887777665 46666666666666666677899999999999999999999999999999988765
No 3
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=85.90 E-value=2.7 Score=29.80 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=51.8
Q ss_pred HHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 207 LEVVCTYLDSSVAELEKDAYPVLDELARNVSTKN-LEHVRSLKSNLTRLLARVQKVRDEIEH 267 (446)
Q Consensus 207 L~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~-Le~lr~lK~~L~~l~~~v~~vRe~L~~ 267 (446)
+++|...|..+...|+..+..+..+|..+++... -..++.|.+++..+..++....+.+++
T Consensus 1 F~eYl~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li~k 62 (65)
T d1lrza1 1 FDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999999999999887754 556889999999999999988877764
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=69.02 E-value=1.7 Score=28.81 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcCc
Q 013287 428 VLLFLLVLGYARWKKL 443 (446)
Q Consensus 428 ~~i~~~~~~yfrrk~w 443 (446)
+.++.++.+|.||++|
T Consensus 17 l~~l~~l~yy~KR~~W 32 (46)
T d1ppjd2 17 MGLLLPLVYAMKRHKW 32 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3455678899999998
No 5
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=65.48 E-value=8.6 Score=30.82 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=20.3
Q ss_pred CcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 013287 328 DNDVEDLEMLLEAYFMQL-DGTRNKILSVREYI 359 (446)
Q Consensus 328 ~~~~eele~Lle~Y~~~~-d~~~~~i~~l~~~i 359 (446)
....+++..-+.+|...+ ..+...++.++..+
T Consensus 106 ~~~~ee~r~~l~p~~eel~~~l~~~~eel~~kL 138 (144)
T d1gs9a_ 106 GQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 138 (144)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777778887777 55555555555443
No 6
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.83 E-value=18 Score=27.07 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.1
Q ss_pred hhhhHHHhCCChhhhhhh
Q 013287 82 KSVIIERAGVPARDLRIL 99 (446)
Q Consensus 82 k~~i~~~~~L~~RDLr~L 99 (446)
|..|..++|+++.+.|++
T Consensus 58 K~~I~~~~gi~~~~qrLi 75 (103)
T d1j8ca_ 58 KEAISKRFKSQTDQLVLI 75 (103)
T ss_dssp HHHHHHHHCSCSSSEEEE
T ss_pred HHHHHHHHCcCHHHeeee
Confidence 678999999999888853
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=46.08 E-value=7.3 Score=25.68 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCc
Q 013287 430 LFLLVLGYARWKKL 443 (446)
Q Consensus 430 i~~~~~~yfrrk~w 443 (446)
+..++.+|.||.+|
T Consensus 19 ~l~~~~~y~KR~kW 32 (47)
T d3cx5d2 19 SLYLLSIWVKKFKW 32 (47)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 33577889999998
No 8
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.85 E-value=69 Score=23.87 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 199 EFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKN--LEHVRSLKSNLTRLLARVQKVRDEIE 266 (446)
Q Consensus 199 Ef~~LE~iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~--Le~lr~lK~~L~~l~~~v~~vRe~L~ 266 (446)
|+.-+-.=|.+.|..++..+.+|++.+.-+.. ++.... -..|..-|+=+..++..|..+++.|.
T Consensus 39 e~~~~~~eL~~~l~siewdL~dLe~av~~ve~----np~kf~l~~~ei~~Rr~fi~~~~~~I~~~~~~l~ 104 (106)
T d1lvfa_ 39 EIDWTTNELRNNLRSIEWDLEDLDETISIVEA----NPRKFNLDATELSIRKAFITSTRQIVRDMKDQMS 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----SGGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666788888888888888887754432 222222 23344456666777777777777664
No 9
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.66 E-value=88 Score=23.52 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 336 MLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQ 369 (446)
Q Consensus 336 ~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i~ 369 (446)
..++.||.+++.+...+..++..++.+.++-.-.
T Consensus 3 ~~m~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~~~~ 36 (124)
T d1ez3a_ 3 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAI 36 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999988887777664433
No 10
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.72 E-value=1.1e+02 Score=22.79 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 013287 331 VEDLEMLLEAYFMQLDGTRNKILSVREYIDDTED---------YVNIQLDNQRNELIQLQLIL 384 (446)
Q Consensus 331 ~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~---------~i~i~Ld~~rN~l~~~~~~L 384 (446)
.++++.+....-+....+..++..++...+..+. .-..+.++.++++..+|.-.
T Consensus 47 ~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y 109 (124)
T d1ez3a_ 47 KEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEY 109 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665555556666666666555443221 12225566666666665543
No 11
>d2g0ua1 a.2.20.1 (A:1-84) BsaL needle protein {Burkholderia pseudomallei [TaxId: 28450]}
Probab=24.38 E-value=1.2e+02 Score=21.87 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=43.6
Q ss_pred HHHHHHhhhhhHHHHHHhhHHHHHHHHhhcCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287 206 ALEVVCTYLDSSVAELEKDAYPVLDELARNVSTK-NLEHVRSLKSNLTRLLARVQKVRDEIEH 267 (446)
Q Consensus 206 iL~~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~-~Le~lr~lK~~L~~l~~~v~~vRe~L~~ 267 (446)
.|+.+...|+..+..++.++...++.|..+++.. -|-.++.--.+++-++..-..+-.++.+
T Consensus 17 yl~~v~~~f~~~~~~~~~~v~~Al~aL~~~psdPa~LA~yQ~~lseysl~rNaqSt~vKa~KD 79 (84)
T d2g0ua1 17 YLTGIGRAFDDGVKDLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAVKSMKD 79 (84)
T ss_dssp HHHHHHGGGCTTTHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5788999999999999999999999999876553 3556555555665555443334344433
No 12
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=24.37 E-value=30 Score=25.72 Aligned_cols=7 Identities=14% Similarity=-0.050 Sum_probs=4.9
Q ss_pred hcccCCC
Q 013287 401 FGMNIPC 407 (446)
Q Consensus 401 fGMN~~~ 407 (446)
+||||+-
T Consensus 10 ~ql~fqd 16 (100)
T d3dtub2 10 GGTGFQP 16 (100)
T ss_dssp TCCSCCC
T ss_pred CCcCCCC
Confidence 5788863
No 13
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.23 E-value=1.3e+02 Score=21.71 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 013287 240 NLEHVRSLKSNLTRLLARVQKVR 262 (446)
Q Consensus 240 ~Le~lr~lK~~L~~l~~~v~~vR 262 (446)
-..+|+..|+.|..+++.+...|
T Consensus 65 ~~~klr~Yk~dl~~lk~elk~a~ 87 (89)
T d1vcsa1 65 YSNRMRSYKQEMGKLETDFKRSR 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999998877655
No 14
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.42 E-value=1.3e+02 Score=21.18 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=17.3
Q ss_pred HHHHHHH---HHHHHhhhhhHHHHHHhhHHHHH
Q 013287 200 FQVLEIA---LEVVCTYLDSSVAELEKDAYPVL 229 (446)
Q Consensus 200 f~~LE~i---L~~v~~~Le~~~~~Le~~~~~vl 229 (446)
|..|+.. +......++..+.+|+..+.++.
T Consensus 7 ~~~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~ 39 (94)
T d1wa8b1 7 FAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLA 39 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 44455666666666666654443
Done!