BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013288
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 182/410 (44%), Gaps = 75/410 (18%)
Query: 1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
M++ T+L+W LI++ Y S G D R+ +KW TDY + + T ++ Y QVG
Sbjct: 65 MAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFI----KAHTSQNEFYGQVGQG 120
Query: 61 QNGTSEPNDHNCWQRPEDMDYPRPVQTINA---GPDLAGEMXXXXXXXSIVFKD-NTAYS 116
DH W RPEDM RP I+ G DLAGE SIVF++ + YS
Sbjct: 121 D------ADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYS 174
Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYL 176
L+ A+ +FDFA R Y +Y S+ Y DE +W AAWLY AT + +YL
Sbjct: 175 NNLLTHARQLFDFANN--YRGKYSDSITDARNFYASADYRDELVWAAAWLYRATNDNTYL 232
Query: 177 SLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNT 236
+ A + F L+WD+K+ +LL + L+ Y+D ++ Y N
Sbjct: 233 NTAESL-----YDEFGLQNWGGGLNWDSKVSGVQVLLAK----LTNKQAYKDTVQSYVNY 283
Query: 237 TSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYV---------ANAAFLASLYVDYLN 287
++ Q P+ L Y+ ANAAF+
Sbjct: 284 ---------------------LINNQQKTPKGLLYIDMWGTLRHAANAAFIM-------- 314
Query: 288 ASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIP 347
++ + R FA +QI Y LG S+V G+G P HHR +S P
Sbjct: 315 ------LEAAELGLSASSYRQFAQTQIDYALGDG--GRSFVCGFGSNPPTRPHHRSSSCP 366
Query: 348 SDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTE 397
+C W N+P PN H ++GA+V GPD+ D + D R+++ + E
Sbjct: 367 P--APATCD--WNTFNSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVHNE 412
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 170/404 (42%), Gaps = 54/404 (13%)
Query: 1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
MS++ ML W++ EY ++ G+Y+H+ IKW DY + + D Y QVG
Sbjct: 87 MSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFI----KCHPEKDVYYYQVGDG 142
Query: 61 QNGTSEPNDHNCWQRPEDMDYPRP---VQTINAGPDLAGEMXXXXXXXSIVFKD-NTAYS 116
DH W E M RP V + G + E SI+FK + YS
Sbjct: 143 H------ADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYS 196
Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNS-SGYFDEYMWGAAWLYYATGNVSY 175
++ +K AK +F+FA Y N F YNS SG++DE W A WLY AT + SY
Sbjct: 197 KECLKHAKELFEFADTTKSDDGYTAANGF----YNSWSGFYDELSWAAVWLYLATNDSSY 252
Query: 176 LSLATNSGLPKNSKAFYRIPE-KSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYH 234
L A + + IP+ K WD+ LLL R + + Y++ + +
Sbjct: 253 LDKAESYSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLARIK---NDNGKYKEAIERH- 308
Query: 235 NTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGF 294
L + +T G+ L+Q L+Y AFLA +Y D+ N
Sbjct: 309 ----LDWWTTGYNGERITYTPKGLAWLDQWG--SLRYATTTAFLACVYSDWENGDKEKAK 362
Query: 295 TCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYS 354
T FA SQ Y LG S+VVG+G+ P+ HHR A
Sbjct: 363 T----------YLEFARSQADYALGST--GRSFVVGFGENPPKRPHHRTA---------- 400
Query: 355 CKGGWKWSN-NPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTE 397
G W S P + H + GA+V GPD D + D +N+ E
Sbjct: 401 -HGSWADSQMEPPEHRHVLYGALVGGPDSTDNYTDDISNYTCNE 443
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 179/413 (43%), Gaps = 67/413 (16%)
Query: 1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
M+F TML+W IE Y G+ ++++ ++W DY + S + +Y QVG
Sbjct: 66 MAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSP----NVLYVQVGDG 121
Query: 61 QNGTSEPNDHNCWQRPEDMDYPRPVQTINA---GPDLAGEMXXXXXXXSIVFKDNT-AYS 116
DH W E M RP ++ G D+A E SIVF D+ AY+
Sbjct: 122 DA------DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYA 175
Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYL 176
LV+ AK ++ FA R Y P Y + SGY DE +WGA WLY ATG+ SYL
Sbjct: 176 ATLVQHAKQLYTFADT--YRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYL 233
Query: 177 SLATNS--GLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYH 234
+ A L + R + ++WD+K +LL + E + Y
Sbjct: 234 AKAEYEYDFLSTEQQTDLR-SYRWTIAWDDKSYGTYVLLAK-----------ETGKQKYI 281
Query: 235 NTTS--LTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAP 292
+ + L + ++ GGM L+ L+Y AN AF+A +Y ++
Sbjct: 282 DDANRWLDYWTVGVNGQRVPYSPGGMAVLDTWG--ALRYAANTAFVALVYAKVID----- 334
Query: 293 GFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKK 352
+ + + FA QI Y LG NP SYVVG+G PR+ HHR
Sbjct: 335 ------DPVRKQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHR---------- 378
Query: 353 YSCKGGWKWS-NNPKPNPHNITGAMVAGP---------DRFDKF-NDVRTNHN 394
+ G W S +P N H + GA+V GP DR D N+V T++N
Sbjct: 379 -TAHGSWTDSIASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYN 430
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 109/404 (26%), Positives = 174/404 (43%), Gaps = 71/404 (17%)
Query: 3 FAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQN 62
++ +L WSL E+ + + G M + +K+ TDY L + +S T Y QVG
Sbjct: 69 YSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTT----FYYQVG---- 120
Query: 63 GTSEPN-DHNCWQRPEDMDYPRP----VQTINAGPDLAGEMXXXXXXXSIVFKD-NTAYS 116
E N DH W PE+ RP + D+ E + +K+ ++AY+
Sbjct: 121 ---EGNADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYA 177
Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYL 176
K + AK ++ + +G + +Y ++ + D+ W A WLY AT + +Y+
Sbjct: 178 TKCLNAAKELYAMGKAN-------QGVGNGQSFYQATSFGDDLAWAATWLYTATNDSTYI 230
Query: 177 SLATNSGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNT 236
+ A N+ ++ +K + WD+ A L L + ++ Y+D + N
Sbjct: 231 TDAEQFITLGNTMNENKMQDKWTMCWDDMYVPAALRLAQ----ITGKQIYKDAIEFNFNY 286
Query: 237 TSLTMCSYLEQFHVFNWTRGGMVQL-NQGKPQPLQYVANAAFLASLYVDYLNASGAPGFT 295
+ + T GG+ L N G L+Y A + + +Y
Sbjct: 287 WKTQVTT----------TPGGLKWLSNWG---VLRYAAAESMVMLVY------------- 320
Query: 296 CGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSC 355
C N L A Q+ YILG NP MSY++GYG + H HHR A+
Sbjct: 321 CKQN--PDQSLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAAN---------- 368
Query: 356 KGGWKWSN--NPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTE 397
G+ ++N N KP H +TGA+V GPD+ DKF D + YTE
Sbjct: 369 --GYTYANGDNAKPAKHLLTGALVGGPDQNDKFLDDANQYQYTE 410
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 170/418 (40%), Gaps = 71/418 (16%)
Query: 2 SFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLL-LTFNSSATKIDKIYAQVGGS 60
++A + + W E+ ++++ G+ H ++++ DY + TF ++ + QVG
Sbjct: 128 AYAASTVGWGYYEFKDQFRATGQAVHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDG 187
Query: 61 QNGTSEPNDHNCWQRPEDMDYPRP---VQTINAGPDLAGEMXXXXXXXSIVFKD-NTAYS 116
DH W PE+ R + G D+ + FKD + Y+
Sbjct: 188 DI------DHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINYMNFKDTDPQYA 241
Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYL 176
K + AK +FDFA + K +G + YY SS + D+Y W AAWLY AT N YL
Sbjct: 242 AKSLDYAKALFDFAEKNPK--GVVQGEDGPKGYYGSSKWQDDYCWAAAWLYLATQNEHYL 299
Query: 177 SLATNSGLPKNSKAF----YRIPEKSVLSWDNKLPAAMLLLTRFR-IFLSPGYPYEDMLR 231
+AF Y P + W++ +L ++ +ED +
Sbjct: 300 D-----------EAFKYYDYYAPPGWIHCWNDVWSGTACILAEINDLYDKDSQNFEDRYK 348
Query: 232 MYHNTTSLTMCSYLE--QFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNAS 289
N + + Q + W+ GG+ P YV +LN
Sbjct: 349 RASNKNQWEQIDFWKPIQDLLDKWSGGGIT------VTPGGYV------------FLNQW 390
Query: 290 GAPGFTCGPNFITL----------AKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHV 339
G+ + I L +K ++A SQ+ Y+LGKNP+ YVVGY ++
Sbjct: 391 GSARYNTAAQLIALVYDKHHGDTPSKYANWARSQMDYLLGKNPLNRCYVVGYSSNSVKYP 450
Query: 340 HHRGASIPSDGKKYSCKGGWKWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNHNYTE 397
HHR AS G K +N+ P+ + + GA+V GPD D+ D ++ Y E
Sbjct: 451 HHRAAS------------GLKDANDSSPHKYVLYGALVGGPDASDQHVDRTNDYIYNE 496
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 118/414 (28%), Positives = 166/414 (40%), Gaps = 83/414 (20%)
Query: 1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
MS+ TMLSW++ EY + G+ +H+ I+W DY + S Y QVG
Sbjct: 88 MSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYV----YYYQVGDG 143
Query: 61 QNGTSEPNDHNCWQRPEDMDYPRP---VQTINAGPDLAGEMXXXXXXXSIVFKD-NTAYS 116
DH W E M RP V + G + E SIV KD N +
Sbjct: 144 S------KDHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKA 197
Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNS-SGYFDEYMWGAAWLYYATGNVSY 175
++ AK +++FA Y N YYNS SG++DE W A WLY AT + +Y
Sbjct: 198 ATYLQHAKELYEFAEVTKSDAGYTAAN----GYYNSWSGFYDELSWAAVWLYLATNDSTY 253
Query: 176 LSLATN--SGLPKNSKAFYRIPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMY 233
L+ A + PK S + I K WD+ A LLL +
Sbjct: 254 LTKAESYVQNWPKISGS-NTIDYKWAHCWDDVHNGAALLLAKI----------------- 295
Query: 234 HNTTSLTMCSYLEQFHVFNWTRG-----------GMVQLNQGKPQPLQYVANAAFLASLY 282
T + + + H+ WT G G+ L+Q L+Y AFLA +Y
Sbjct: 296 ---TGKDIYKQIIESHLDYWTTGYNGERIKYTPKGLAWLDQWG--SLRYATTTAFLAFVY 350
Query: 283 VDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHR 342
D++ G P R F SQI Y LG S+VVG+G P+ HHR
Sbjct: 351 SDWV---GCPS-------TKKEIYRKFGESQIDYALGS--AGRSFVVGFGTNPPKRPHHR 398
Query: 343 GASIPSDGKKYSCKGGWKWSNN---PKPNPHNITGAMVAGPDRFDKFNDVRTNH 393
A W+++ P + H + GA+V GP D + D +N+
Sbjct: 399 TAHS-------------SWADSQSIPSYHRHTLYGALVGGPGSDDSYTDDISNY 439
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 167/400 (41%), Gaps = 56/400 (14%)
Query: 1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
MS+ ML+WSL E Y G+ ++ + IKW DY + + Y QVG
Sbjct: 66 MSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGV----YYYQVGDG 121
Query: 61 QNGTSEPNDHNCWQRPEDMDYPRPVQTINA---GPDLAGEMXXXXXXXSIVFKD-NTAYS 116
DH+ W E M RP ++A G + ++VFK + Y+
Sbjct: 122 GK------DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYA 175
Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYL 176
K + AK +FD A + Y + + SS ++D+ W A WLY AT + +YL
Sbjct: 176 EKCISHAKNLFDMADKAKSDAGYTAASGYYS----SSSFYDDLSWAAVWLYLATNDSTYL 231
Query: 177 SLATNSGLPKNSKAFYR--IPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYH 234
A S +P K I K WD+ A LLL + L+ Y+D + M
Sbjct: 232 DKA-ESYVPNWGKEQQTDIIAYKWGQCWDDVHYGAELLLAK----LTNKQLYKDSIEM-- 284
Query: 235 NTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGF 294
+L + ++T G+ L Q L++ AFLA +Y ++
Sbjct: 285 ---NLDFWTTGVNGTRVSYTPKGLAWLFQWG--SLRHATTQAFLAGVYAEWEG------- 332
Query: 295 TCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYS 354
C P+ +++ K F SQI Y LG S+VVGYG P+H HHR A
Sbjct: 333 -CTPSKVSVYK--DFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHRTA---------- 377
Query: 355 CKGGW-KWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNH 393
G W +P + H I GA+V GPD D + D N+
Sbjct: 378 -HGSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNY 416
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 167/400 (41%), Gaps = 56/400 (14%)
Query: 1 MSFAMTMLSWSLIEYNHKYQSIGEYDHMRELIKWGTDYLLLTFNSSATKIDKIYAQVGGS 60
MS+ ML+WSL E Y G+ ++ + IKW DY + + Y QVG
Sbjct: 66 MSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGV----YYYQVGDG 121
Query: 61 QNGTSEPNDHNCWQRPEDMDYPRPVQTINA---GPDLAGEMXXXXXXXSIVFKD-NTAYS 116
DH+ W E M RP ++A G + ++VFK + Y+
Sbjct: 122 GK------DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYA 175
Query: 117 RKLVKGAKTVFDFAREGGKRRPYCRGNPFIEPYYNSSGYFDEYMWGAAWLYYATGNVSYL 176
K + AK +FD A + Y + + SS ++D+ W A WLY AT + +YL
Sbjct: 176 EKCISHAKNLFDMADKAKSDAGYTAASGYYS----SSSFYDDLSWAAVWLYLATNDSTYL 231
Query: 177 SLATNSGLPKNSKAFYR--IPEKSVLSWDNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYH 234
A S +P K I K WD+ A LLL + L+ Y+D + M
Sbjct: 232 DKA-ESYVPNWGKEQQTDIIAYKWGQXWDDVHYGAELLLAK----LTNKQLYKDSIEM-- 284
Query: 235 NTTSLTMCSYLEQFHVFNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGF 294
+L + ++T G+ L Q L++ AFLA +Y ++
Sbjct: 285 ---NLDFWTTGVNGTRVSYTPKGLAWLFQWG--SLRHATTQAFLAGVYAEWEG------- 332
Query: 295 TCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYS 354
C P+ +++ K F SQI Y LG S+VVGYG P+H HHR A
Sbjct: 333 -CTPSKVSVYK--DFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHRTA---------- 377
Query: 355 CKGGW-KWSNNPKPNPHNITGAMVAGPDRFDKFNDVRTNH 393
G W +P + H I GA+V GPD D + D N+
Sbjct: 378 -HGSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNY 416
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 79/372 (21%), Positives = 119/372 (31%), Gaps = 100/372 (26%)
Query: 29 RELIKWGTDYLLLTFNSSATKIDKIYAQVGGSQNGTSEPNDHNCWQRPEDMDYPRPVQTI 88
RE I W LLT AT GG + + P+ RPED D P + I
Sbjct: 195 REEIAW-----LLTMQDPAT---------GGVYHKVTTPSFPPLDTRPEDDDAPLVLSPI 240
Query: 89 NAGPDLAGEMXXXXXXXSIVFKDNTAYSRKLVKGAKTVFDFAREGGKRRPYC-RGNPFIE 147
+ + F A++ + + RR Y G ++
Sbjct: 241 S-------------YAATATFCAAMAHAALVYRPFDPALSSCCADAARRAYAWLGAHEMQ 287
Query: 148 PYYNSSGYF----------DEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEK 197
P++N G DE +W + L TG+ S + + +
Sbjct: 288 PFHNPDGILTGEYGDAELRDELLWASCALLRMTGD---------SAWARVCEPLLDLDLP 338
Query: 198 SVLSW-DNKLPAAMLLLTRFRIFLSPGYPYEDMLRMYHNTTSLTMCSYLEQFHV------ 250
L W D L M L R +S + R+ +L + F +
Sbjct: 339 WELGWADVALYGVMDYLRTPRAAVSDDVRNKVKSRLLRELDALAAMAESHPFGIPMRDDD 398
Query: 251 FNWTRGGMVQLNQGKPQPLQYVANAAFLASLYVDYLNASGAPGFTCGPNFITLAKLRSFA 310
F W MV LN+ AFL + V L+ + + A
Sbjct: 399 FIWG-SNMVLLNRAM----------AFLLAEGVGVLHPAA----------------HTVA 431
Query: 311 TSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNNPKPNPH 370
Y+ G NP+ YV G+G++ RH HHR S+ D H
Sbjct: 432 QRAADYLFGANPLGQCYVTGFGQRPVRHPHHR-PSVADDVD------------------H 472
Query: 371 NITGAMVAGPDR 382
+ G +V GP+R
Sbjct: 473 PVPGMVVGGPNR 484
>pdb|3A54|A Chain A, Crystal Structure Of The A47q1 Mutant Of
Pro-Protein-Glutaminase
pdb|3A54|B Chain B, Crystal Structure Of The A47q1 Mutant Of
Pro-Protein-Glutaminase
pdb|3A55|A Chain A, Crystal Structure Of The A47q2 Mutant Of Pro-
Protein-Glutaminase
pdb|3A55|B Chain B, Crystal Structure Of The A47q2 Mutant Of Pro-
Protein-Glutaminase
Length = 305
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 145 FIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDN 204
I+P SSG + W A + + G+ S S A +G +YR P S L +DN
Sbjct: 215 IIDPSLFSSGPVTDTAWRNACVNTSCGSASVSSYANTAG-----NVYYRSPSNSYL-YDN 268
Query: 205 KLPAAMLLLTRFRIF 219
L +LT+F +
Sbjct: 269 NLINTNCVLTKFSLL 283
>pdb|3A56|A Chain A, Crystal Structure Of Pro- Protein-Glutaminase
pdb|3A56|B Chain B, Crystal Structure Of Pro- Protein-Glutaminase
Length = 305
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 145 FIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDN 204
I+P SSG + W A + + G+ S S A +G +YR P S L +DN
Sbjct: 215 IIDPSLFSSGPVTDTAWRNACVNTSCGSASVSSYANTAG-----NVYYRSPSNSYL-YDN 268
Query: 205 KLPAAMLLLTRFRIF 219
L +LT+F +
Sbjct: 269 NLINTNCVLTKFSLL 283
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 314 IGYILGKNPMKMSYVVGYGKQFPRHVHHR 342
I Y+LG+N M SYV GYG++ ++ H R
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 314 IGYILGKNPMKMSYVVGYGKQFPRHVHHR 342
I Y+LG+N M SYV GYG++ ++ H R
Sbjct: 504 ISYLLGRNAMDQSYVTGYGERPLQNPHDR 532
>pdb|2KSV|A Chain A, The Nmr Structure Of Protein-Glutaminase From
Chryseobacteri Proteolyticum
Length = 185
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 145 FIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDN 204
I+P SSG + W A + + G+ S S A +G +YR P S L +DN
Sbjct: 101 IIDPSLFSSGPVTDTAWRNACVNTSCGSASVSSYANTAG-----NVYYRSPSNSYL-YDN 154
Query: 205 KLPAAMLLLTRFRIF 219
L +LT+F +
Sbjct: 155 NLINTNCVLTKFSLL 169
>pdb|2ZK9|X Chain X, Crystal Structure Of Protein-Glutaminase
Length = 185
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 145 FIEPYYNSSGYFDEYMWGAAWLYYATGNVSYLSLATNSGLPKNSKAFYRIPEKSVLSWDN 204
I+P SSG + W A + + G+ S S A +G +YR P S L +DN
Sbjct: 101 IIDPSLFSSGPVTDTAWRNACVNTSCGSASVSSYANTAG-----NVYYRSPSNSYL-YDN 154
Query: 205 KLPAAMLLLTRFRIF 219
L +LT+F +
Sbjct: 155 NLINTNCVLTKFSLL 169
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 54/142 (38%), Gaps = 11/142 (7%)
Query: 225 PYEDMLRMYHNTTSLTMCSYLEQFHVFNWTR-----GGMVQLNQGKPQP-LQYVANAAFL 278
PY+ TT M S F V N T GG NQ P + YV
Sbjct: 10 PYDGWAAYGEGTTGGAMASPQNVFVVTNRTELIQALGGNNHTNQYNSVPKIIYVKGTI-- 67
Query: 279 ASLYVDYLNASGAPGFTCGPNFITLAKLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRH 338
L VD N P F P+F A LR + + G + P++ + V KQ R
Sbjct: 68 -DLNVDDNNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRI 126
Query: 339 VHHRGA--SIPSDGKKYSCKGG 358
+ + G+ SI GK KGG
Sbjct: 127 MVYVGSNTSIIGVGKDAKIKGG 148
>pdb|3H7L|A Chain A, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|B Chain B, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|C Chain C, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
Length = 586
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 305 KLRSFATSQIGYILGKNPMKMSYVVGYGKQFPRHVHHRGASIPSDGKKYSCKGGWKWSNN 364
+L FA + +I+G NP M + G+G+ P ++ G G GG++ +
Sbjct: 469 QLSVFAQDALNWIVGLNPYDMCMLDGHGRNNPDYLPQYGFFNAKGGVCNGITGGFEDEED 528
Query: 365 PKPNP 369
NP
Sbjct: 529 IAFNP 533
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,216,161
Number of Sequences: 62578
Number of extensions: 626082
Number of successful extensions: 972
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 24
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)