Query 013289
Match_columns 446
No_of_seqs 296 out of 1557
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4185 Uncharacterized protei 99.9 8.6E-26 1.9E-30 206.5 15.5 173 141-381 1-174 (187)
2 PF06414 Zeta_toxin: Zeta toxi 99.9 6.4E-25 1.4E-29 206.5 15.8 172 138-363 11-190 (199)
3 PHA02530 pseT polynucleotide k 99.7 4.9E-16 1.1E-20 153.8 19.1 201 141-410 1-202 (300)
4 PF13671 AAA_33: AAA domain; P 99.7 1.4E-15 3.1E-20 133.5 13.4 125 144-329 1-125 (143)
5 COG2074 2-phosphoglycerate kin 99.6 1.4E-14 3E-19 141.5 12.4 143 83-240 36-198 (299)
6 PRK06762 hypothetical protein; 99.5 8.6E-14 1.9E-18 126.4 12.9 130 141-339 1-131 (166)
7 COG4639 Predicted kinase [Gene 99.4 1.2E-12 2.7E-17 119.9 12.1 132 141-341 1-132 (168)
8 TIGR01663 PNK-3'Pase polynucle 99.4 1.7E-12 3.7E-17 139.5 14.5 107 140-327 367-473 (526)
9 PRK04220 2-phosphoglycerate ki 99.4 2.6E-11 5.6E-16 122.1 20.3 164 67-244 19-206 (301)
10 TIGR01313 therm_gnt_kin carboh 99.4 1.5E-11 3.2E-16 111.4 15.2 129 145-340 1-129 (163)
11 cd02021 GntK Gluconate kinase 99.4 2.5E-11 5.4E-16 108.3 15.8 125 144-332 1-125 (150)
12 COG0645 Predicted kinase [Gene 99.4 1.2E-11 2.5E-16 114.8 13.4 123 142-324 1-126 (170)
13 cd00227 CPT Chloramphenicol (C 99.3 1.9E-11 4.1E-16 112.7 12.7 128 142-323 2-132 (175)
14 TIGR03574 selen_PSTK L-seryl-t 99.3 3.1E-11 6.7E-16 117.4 13.6 132 144-342 1-132 (249)
15 PRK12337 2-phosphoglycerate ki 99.3 3E-10 6.4E-15 120.2 19.9 183 92-337 210-419 (475)
16 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 5.1E-10 1.1E-14 102.9 17.5 142 144-345 1-148 (183)
17 PRK12339 2-phosphoglycerate ki 99.2 4E-10 8.7E-15 107.2 16.9 136 141-337 2-155 (197)
18 PRK14527 adenylate kinase; Pro 99.1 1.1E-09 2.3E-14 102.4 14.4 148 140-347 4-158 (191)
19 cd02027 APSK Adenosine 5'-phos 99.1 9.1E-10 2E-14 99.6 12.1 113 144-319 1-114 (149)
20 TIGR00455 apsK adenylylsulfate 99.1 2.1E-09 4.6E-14 99.6 13.8 92 140-246 16-108 (184)
21 PLN02200 adenylate kinase fami 99.0 1.2E-08 2.6E-13 99.4 18.0 45 132-183 33-77 (234)
22 PRK06696 uridine kinase; Valid 99.0 9.6E-10 2.1E-14 105.5 10.2 50 140-191 20-69 (223)
23 PF01583 APS_kinase: Adenylyls 99.0 4.5E-09 9.8E-14 96.8 13.5 92 141-246 1-92 (156)
24 PF07931 CPT: Chloramphenicol 99.0 3.4E-09 7.3E-14 99.3 12.1 127 143-324 2-132 (174)
25 TIGR01360 aden_kin_iso1 adenyl 99.0 1.2E-08 2.7E-13 93.4 15.4 34 143-183 4-37 (188)
26 PRK14532 adenylate kinase; Pro 99.0 1.4E-08 3.1E-13 94.1 15.5 32 145-183 3-34 (188)
27 KOG3354 Gluconate kinase [Carb 99.0 1E-08 2.3E-13 94.4 13.3 140 137-334 7-147 (191)
28 COG0237 CoaE Dephospho-CoA kin 99.0 2.9E-09 6.3E-14 101.8 10.1 132 141-324 1-146 (201)
29 PRK05541 adenylylsulfate kinas 98.9 1E-08 2.2E-13 94.3 12.4 84 140-238 5-88 (176)
30 PRK14531 adenylate kinase; Pro 98.9 3.5E-08 7.5E-13 91.9 16.2 35 142-183 2-36 (183)
31 PRK12338 hypothetical protein; 98.9 3.7E-08 8E-13 100.3 17.6 132 140-328 2-156 (319)
32 COG0572 Udk Uridine kinase [Nu 98.9 1.3E-09 2.9E-14 105.2 6.6 146 140-331 6-158 (218)
33 PRK00081 coaE dephospho-CoA ki 98.9 8.5E-09 1.8E-13 97.2 11.9 34 142-183 2-35 (194)
34 PRK01184 hypothetical protein; 98.9 5.3E-08 1.2E-12 90.0 16.7 33 143-183 2-34 (184)
35 PF08433 KTI12: Chromatin asso 98.9 1.4E-08 2.9E-13 101.2 13.3 138 144-345 3-140 (270)
36 COG4088 Predicted nucleotide k 98.9 1.4E-08 3.1E-13 97.5 11.8 139 143-345 2-141 (261)
37 PRK00889 adenylylsulfate kinas 98.9 2.9E-08 6.2E-13 91.2 13.6 90 140-243 2-91 (175)
38 cd01428 ADK Adenylate kinase ( 98.9 7.4E-08 1.6E-12 88.9 16.0 32 145-183 2-33 (194)
39 PRK09825 idnK D-gluconate kina 98.9 6.5E-08 1.4E-12 90.2 15.2 123 142-331 3-125 (176)
40 cd02020 CMPK Cytidine monophos 98.9 3.4E-08 7.5E-13 86.7 12.6 123 144-342 1-123 (147)
41 PRK03846 adenylylsulfate kinas 98.8 3.9E-08 8.4E-13 92.6 13.1 94 140-248 22-116 (198)
42 PRK00279 adk adenylate kinase; 98.8 9.1E-08 2E-12 91.1 15.7 33 144-183 2-34 (215)
43 COG3265 GntK Gluconate kinase 98.8 3.7E-08 8.1E-13 90.0 12.3 119 149-335 2-121 (161)
44 PRK14733 coaE dephospho-CoA ki 98.8 1.6E-08 3.5E-13 96.9 10.0 37 140-183 4-40 (204)
45 PRK11545 gntK gluconate kinase 98.8 3.8E-08 8.2E-13 90.5 11.7 111 148-323 1-112 (163)
46 TIGR02173 cyt_kin_arch cytidyl 98.8 4.1E-08 8.9E-13 88.7 11.7 34 143-183 1-34 (171)
47 TIGR01351 adk adenylate kinase 98.8 1.1E-07 2.4E-12 90.2 14.9 32 145-183 2-33 (210)
48 COG0529 CysC Adenylylsulfate k 98.8 6E-08 1.3E-12 91.1 12.5 82 139-235 20-102 (197)
49 PF01121 CoaE: Dephospho-CoA k 98.8 1.1E-08 2.3E-13 96.2 6.7 128 143-324 1-145 (180)
50 PRK04182 cytidylate kinase; Pr 98.8 1.6E-07 3.5E-12 85.3 14.1 33 144-183 2-34 (180)
51 COG1102 Cmk Cytidylate kinase 98.8 6.6E-08 1.4E-12 89.7 11.3 81 143-238 1-83 (179)
52 PRK05506 bifunctional sulfate 98.8 5.9E-08 1.3E-12 106.8 13.0 93 140-246 458-550 (632)
53 PRK07261 topology modulation p 98.8 5.4E-08 1.2E-12 90.1 10.7 104 144-328 2-106 (171)
54 KOG3079 Uridylate kinase/adeny 98.8 3.8E-08 8.3E-13 92.7 9.6 151 140-345 6-157 (195)
55 PRK06761 hypothetical protein; 98.8 4.4E-08 9.6E-13 98.2 10.6 148 142-366 3-151 (282)
56 cd00464 SK Shikimate kinase (S 98.8 4.2E-07 9E-12 80.7 15.8 32 145-183 2-33 (154)
57 PRK06217 hypothetical protein; 98.7 3.4E-08 7.5E-13 91.8 8.7 34 144-184 3-36 (183)
58 PRK14732 coaE dephospho-CoA ki 98.7 8.4E-08 1.8E-12 91.1 11.5 126 144-323 1-143 (196)
59 TIGR03575 selen_PSTK_euk L-ser 98.7 1.8E-07 3.9E-12 96.1 14.0 40 144-184 1-40 (340)
60 PRK14734 coaE dephospho-CoA ki 98.7 1.2E-07 2.7E-12 90.0 11.7 33 143-183 2-34 (200)
61 PRK14730 coaE dephospho-CoA ki 98.7 5.4E-08 1.2E-12 92.1 9.0 34 143-183 2-35 (195)
62 PRK06547 hypothetical protein; 98.7 1.8E-07 4E-12 87.1 12.3 37 140-183 13-49 (172)
63 PTZ00451 dephospho-CoA kinase; 98.7 1.3E-07 2.9E-12 93.0 11.8 34 143-183 2-35 (244)
64 PRK14530 adenylate kinase; Pro 98.7 5.1E-07 1.1E-11 86.0 15.6 33 144-183 5-37 (215)
65 PRK05537 bifunctional sulfate 98.7 1.7E-07 3.7E-12 102.2 13.6 96 140-248 390-485 (568)
66 cd02022 DPCK Dephospho-coenzym 98.7 7.7E-08 1.7E-12 89.3 9.3 32 144-183 1-32 (179)
67 PRK00131 aroK shikimate kinase 98.7 6.1E-07 1.3E-11 80.9 14.8 37 140-183 2-38 (175)
68 PRK09270 nucleoside triphospha 98.7 1.9E-06 4.2E-11 83.0 19.1 69 101-186 7-76 (229)
69 PRK14528 adenylate kinase; Pro 98.7 3.4E-07 7.4E-12 85.8 13.2 47 304-350 110-157 (186)
70 PRK08118 topology modulation p 98.7 2E-07 4.4E-12 86.1 11.4 33 144-183 3-35 (167)
71 PRK10078 ribose 1,5-bisphospho 98.6 5.4E-07 1.2E-11 83.9 13.8 25 142-166 2-26 (186)
72 KOG3220 Similar to bacterial d 98.6 1.1E-07 2.4E-12 90.8 9.2 33 143-183 2-34 (225)
73 PRK04040 adenylate kinase; Pro 98.6 5.4E-07 1.2E-11 85.0 13.7 38 141-183 1-38 (188)
74 PRK13946 shikimate kinase; Pro 98.6 1E-06 2.2E-11 82.2 15.2 36 141-183 9-44 (184)
75 PRK14731 coaE dephospho-CoA ki 98.6 2.8E-07 6.1E-12 87.9 11.7 37 140-184 3-39 (208)
76 COG0194 Gmk Guanylate kinase [ 98.6 1.4E-07 2.9E-12 89.3 8.6 86 141-237 3-102 (191)
77 PRK13947 shikimate kinase; Pro 98.6 2.4E-06 5.3E-11 77.6 16.4 33 145-184 4-36 (171)
78 PRK05480 uridine/cytidine kina 98.6 3.8E-07 8.2E-12 86.2 11.2 40 140-183 4-43 (209)
79 PRK14737 gmk guanylate kinase; 98.6 2.1E-07 4.5E-12 87.7 9.2 86 140-236 2-102 (186)
80 PRK03839 putative kinase; Prov 98.6 3.2E-07 6.8E-12 84.7 10.2 33 144-183 2-34 (180)
81 PRK00625 shikimate kinase; Pro 98.6 2.6E-06 5.7E-11 79.5 16.3 33 144-183 2-34 (173)
82 PRK02496 adk adenylate kinase; 98.6 2.5E-06 5.5E-11 78.9 16.1 33 144-183 3-35 (184)
83 TIGR00152 dephospho-CoA kinase 98.6 6.5E-07 1.4E-11 83.5 11.9 34 144-184 1-34 (188)
84 PRK03731 aroL shikimate kinase 98.5 3.7E-06 8.1E-11 76.7 16.2 35 143-184 3-37 (171)
85 PRK08233 hypothetical protein; 98.5 1.5E-06 3.2E-11 79.3 13.4 27 141-167 2-28 (182)
86 PRK07667 uridine kinase; Provi 98.5 8.1E-07 1.8E-11 83.6 11.5 42 140-183 15-56 (193)
87 PLN02674 adenylate kinase 98.5 1.7E-06 3.6E-11 85.3 13.9 38 139-183 28-65 (244)
88 PRK08356 hypothetical protein; 98.5 5E-06 1.1E-10 78.2 16.2 32 143-182 6-37 (195)
89 PF01591 6PF2K: 6-phosphofruct 98.5 4.5E-06 9.8E-11 81.2 16.2 102 140-249 10-117 (222)
90 PTZ00322 6-phosphofructo-2-kin 98.5 5E-06 1.1E-10 92.3 18.4 162 140-351 213-375 (664)
91 PTZ00301 uridine kinase; Provi 98.5 5.4E-07 1.2E-11 86.7 9.2 40 143-183 4-44 (210)
92 PRK13948 shikimate kinase; Pro 98.5 1.8E-06 3.9E-11 81.3 12.5 38 140-184 8-45 (182)
93 cd01673 dNK Deoxyribonucleosid 98.5 4.4E-06 9.5E-11 77.7 14.9 24 144-167 1-24 (193)
94 PLN02348 phosphoribulokinase 98.5 1.2E-06 2.5E-11 91.6 12.0 45 140-184 47-104 (395)
95 cd01672 TMPK Thymidine monopho 98.5 2.2E-05 4.8E-10 71.9 19.1 24 143-166 1-24 (200)
96 PLN02422 dephospho-CoA kinase 98.5 8.3E-07 1.8E-11 86.8 9.7 33 143-183 2-34 (232)
97 PRK00698 tmk thymidylate kinas 98.4 2.7E-05 5.9E-10 72.4 19.4 26 141-166 2-27 (205)
98 TIGR03263 guanyl_kin guanylate 98.4 6.8E-07 1.5E-11 81.9 8.4 24 143-166 2-25 (180)
99 PRK13973 thymidylate kinase; P 98.4 3.1E-05 6.6E-10 74.1 19.6 93 141-236 2-97 (213)
100 PRK13808 adenylate kinase; Pro 98.4 8.2E-06 1.8E-10 83.8 15.8 32 145-183 3-34 (333)
101 TIGR00041 DTMP_kinase thymidyl 98.4 7.6E-05 1.7E-09 69.2 20.8 26 142-167 3-28 (195)
102 TIGR00017 cmk cytidylate kinas 98.4 7E-06 1.5E-10 79.3 13.8 36 141-183 1-36 (217)
103 PRK05057 aroK shikimate kinase 98.4 8.1E-06 1.8E-10 75.7 13.7 35 142-183 4-38 (172)
104 COG0703 AroK Shikimate kinase 98.4 1.6E-05 3.5E-10 74.5 15.5 34 144-184 4-37 (172)
105 PRK14738 gmk guanylate kinase; 98.4 2.3E-06 4.9E-11 81.5 9.9 87 140-237 11-112 (206)
106 PF00485 PRK: Phosphoribulokin 98.3 6.2E-06 1.3E-10 77.4 12.3 39 144-184 1-43 (194)
107 cd02023 UMPK Uridine monophosp 98.3 2E-06 4.3E-11 80.6 8.9 37 144-184 1-37 (198)
108 TIGR02322 phosphon_PhnN phosph 98.3 1.3E-06 2.8E-11 80.3 7.3 25 143-167 2-26 (179)
109 PF00406 ADK: Adenylate kinase 98.3 1.4E-05 3.1E-10 71.7 13.8 30 147-183 1-30 (151)
110 PTZ00088 adenylate kinase 1; P 98.3 8.8E-06 1.9E-10 79.3 13.1 36 141-183 5-40 (229)
111 PRK00300 gmk guanylate kinase; 98.3 4.1E-06 8.8E-11 78.5 10.1 27 140-166 3-29 (205)
112 PF13207 AAA_17: AAA domain; P 98.3 5.3E-07 1.2E-11 77.1 3.6 33 144-183 1-33 (121)
113 cd02024 NRK1 Nicotinamide ribo 98.3 1.5E-06 3.2E-11 82.3 6.6 34 144-183 1-34 (187)
114 PRK13949 shikimate kinase; Pro 98.3 5.5E-05 1.2E-09 70.1 16.6 33 144-183 3-35 (169)
115 cd02028 UMPK_like Uridine mono 98.3 2.4E-06 5.2E-11 79.8 7.4 39 144-184 1-39 (179)
116 PRK14526 adenylate kinase; Pro 98.2 2.6E-05 5.6E-10 75.1 14.6 32 145-183 3-34 (211)
117 TIGR00235 udk uridine kinase. 98.2 1.7E-05 3.7E-10 75.1 13.1 40 140-183 4-43 (207)
118 PRK00091 miaA tRNA delta(2)-is 98.2 2.9E-05 6.4E-10 78.9 15.5 84 140-234 2-99 (307)
119 cd02030 NDUO42 NADH:Ubiquinone 98.2 4.4E-05 9.5E-10 73.3 15.8 24 144-167 1-24 (219)
120 PF13238 AAA_18: AAA domain; P 98.2 4.5E-06 9.8E-11 71.2 7.7 22 145-166 1-22 (129)
121 PRK07429 phosphoribulokinase; 98.2 1.7E-05 3.8E-10 81.2 12.8 42 139-184 5-46 (327)
122 PRK03333 coaE dephospho-CoA ki 98.2 7.2E-06 1.6E-10 85.9 9.4 33 143-183 2-34 (395)
123 PRK15453 phosphoribulokinase; 98.2 9.9E-06 2.2E-10 81.5 9.8 44 140-185 3-46 (290)
124 smart00072 GuKc Guanylate kina 98.1 9.5E-06 2.1E-10 75.6 8.9 25 142-166 2-26 (184)
125 cd02026 PRK Phosphoribulokinas 98.1 3.1E-05 6.6E-10 77.4 12.8 38 144-185 1-38 (273)
126 cd02029 PRK_like Phosphoribulo 98.1 1.2E-05 2.5E-10 80.5 9.4 40 144-185 1-40 (277)
127 PRK08154 anaerobic benzoate ca 98.1 6.7E-05 1.5E-09 76.0 14.8 37 140-183 131-167 (309)
128 PRK13975 thymidylate kinase; P 98.1 0.00022 4.8E-09 66.2 16.4 26 142-167 2-27 (196)
129 PF01202 SKI: Shikimate kinase 98.0 0.0002 4.2E-09 65.3 15.4 26 151-183 1-26 (158)
130 PLN02318 phosphoribulokinase/u 98.0 4.4E-05 9.6E-10 83.6 12.6 39 140-184 63-101 (656)
131 PF00625 Guanylate_kin: Guanyl 98.0 9.9E-06 2.1E-10 75.2 6.6 25 142-166 2-26 (183)
132 PRK11860 bifunctional 3-phosph 98.0 7.1E-05 1.5E-09 83.2 14.4 64 99-183 413-476 (661)
133 COG0563 Adk Adenylate kinase a 98.0 7.8E-05 1.7E-09 70.1 12.4 32 145-183 3-34 (178)
134 PF02223 Thymidylate_kin: Thym 98.0 0.00066 1.4E-08 62.8 18.3 173 147-362 1-176 (186)
135 PLN02459 probable adenylate ki 98.0 0.00017 3.6E-09 72.0 15.1 35 142-183 29-63 (261)
136 PRK05416 glmZ(sRNA)-inactivati 98.0 0.00021 4.5E-09 72.2 15.5 25 141-165 5-29 (288)
137 PRK13477 bifunctional pantoate 98.0 0.00011 2.4E-09 79.5 14.3 37 140-183 282-318 (512)
138 PRK00023 cmk cytidylate kinase 98.0 0.00015 3.3E-09 70.3 13.5 36 141-183 3-38 (225)
139 PRK13951 bifunctional shikimat 97.9 0.00028 6E-09 76.1 16.2 34 144-184 2-35 (488)
140 PRK14529 adenylate kinase; Pro 97.9 0.0001 2.2E-09 71.9 11.2 32 145-183 3-34 (223)
141 COG1428 Deoxynucleoside kinase 97.9 0.00054 1.2E-08 66.3 15.6 26 142-167 4-29 (216)
142 PLN02199 shikimate kinase 97.9 0.00068 1.5E-08 68.8 16.7 36 142-184 102-137 (303)
143 PLN02924 thymidylate kinase 97.8 0.00083 1.8E-08 65.1 16.5 95 137-236 11-108 (220)
144 PRK14021 bifunctional shikimat 97.8 0.00059 1.3E-08 74.4 16.9 34 143-183 7-40 (542)
145 PRK13974 thymidylate kinase; P 97.7 0.0038 8.3E-08 59.6 19.1 26 142-167 3-28 (212)
146 PRK07933 thymidylate kinase; V 97.7 0.0025 5.4E-08 61.3 17.5 25 143-167 1-25 (213)
147 PLN02840 tRNA dimethylallyltra 97.7 7.5E-05 1.6E-09 78.9 7.2 95 131-236 10-119 (421)
148 COG0125 Tmk Thymidylate kinase 97.7 0.0026 5.7E-08 61.4 17.2 93 141-236 2-96 (208)
149 PRK09518 bifunctional cytidyla 97.7 0.00053 1.1E-08 77.0 13.8 33 144-183 3-35 (712)
150 TIGR01425 SRP54_euk signal rec 97.6 0.00058 1.3E-08 72.5 12.9 44 140-185 98-141 (429)
151 PLN02772 guanylate kinase 97.6 0.00026 5.5E-09 74.3 10.0 85 141-236 134-234 (398)
152 COG0283 Cmk Cytidylate kinase 97.6 0.00064 1.4E-08 66.0 11.7 35 142-183 4-38 (222)
153 TIGR00554 panK_bact pantothena 97.6 8.4E-05 1.8E-09 75.0 5.7 45 140-185 60-105 (290)
154 COG3896 Chloramphenicol 3-O-ph 97.6 0.00046 1E-08 64.4 10.0 130 140-323 21-161 (205)
155 PLN02842 nucleotide kinase 97.6 0.0013 2.8E-08 71.1 15.0 31 146-183 1-31 (505)
156 PRK05439 pantothenate kinase; 97.6 0.0001 2.2E-09 75.1 5.8 46 139-184 83-128 (311)
157 KOG0635 Adenosine 5'-phosphosu 97.5 0.00067 1.5E-08 62.9 9.7 43 140-184 29-71 (207)
158 PLN02748 tRNA dimethylallyltra 97.5 0.0002 4.4E-09 76.7 7.3 87 140-237 20-121 (468)
159 PRK10867 signal recognition pa 97.5 0.0014 3.1E-08 69.7 13.3 45 140-186 98-143 (433)
160 PF00004 AAA: ATPase family as 97.5 0.0004 8.7E-09 59.3 7.5 34 145-183 1-34 (132)
161 cd02025 PanK Pantothenate kina 97.5 0.00012 2.5E-09 70.8 4.6 41 144-184 1-41 (220)
162 PLN02165 adenylate isopentenyl 97.5 0.00022 4.8E-09 73.3 6.7 36 141-183 42-77 (334)
163 TIGR00959 ffh signal recogniti 97.4 0.00063 1.4E-08 72.3 10.0 46 139-185 96-141 (428)
164 TIGR00174 miaA tRNA isopenteny 97.4 0.00026 5.6E-09 71.5 6.7 83 144-237 1-98 (287)
165 TIGR00064 ftsY signal recognit 97.4 0.00057 1.2E-08 68.3 8.6 44 140-185 70-113 (272)
166 cd00071 GMPK Guanosine monopho 97.4 6.6E-05 1.4E-09 67.2 1.8 23 144-166 1-23 (137)
167 PF03668 ATP_bind_2: P-loop AT 97.4 0.0054 1.2E-07 61.9 15.4 23 143-165 2-24 (284)
168 smart00382 AAA ATPases associa 97.4 0.00021 4.6E-09 59.6 4.6 41 142-184 2-42 (148)
169 cd03115 SRP The signal recogni 97.4 0.00078 1.7E-08 61.6 8.5 40 144-185 2-41 (173)
170 PRK14974 cell division protein 97.4 0.0012 2.6E-08 68.0 10.7 44 140-185 138-181 (336)
171 cd02019 NK Nucleoside/nucleoti 97.3 0.00025 5.5E-09 56.1 4.3 23 144-166 1-23 (69)
172 PF08303 tRNA_lig_kinase: tRNA 97.3 0.002 4.3E-08 60.3 10.4 77 145-252 2-79 (168)
173 KOG3877 NADH:ubiquinone oxidor 97.3 0.0097 2.1E-07 60.1 15.7 29 140-168 69-97 (393)
174 PRK10416 signal recognition pa 97.3 0.0016 3.4E-08 66.7 10.6 44 140-185 112-155 (318)
175 PRK13976 thymidylate kinase; P 97.3 0.0067 1.5E-07 58.3 14.0 91 143-237 1-95 (209)
176 COG2019 AdkA Archaeal adenylat 97.3 0.0079 1.7E-07 56.7 13.7 36 142-183 4-39 (189)
177 COG0541 Ffh Signal recognition 97.2 0.0009 1.9E-08 70.7 8.1 90 139-236 97-191 (451)
178 PF00448 SRP54: SRP54-type pro 97.2 0.00039 8.5E-09 66.2 5.0 42 142-185 1-42 (196)
179 KOG1384 tRNA delta(2)-isopente 97.2 0.0032 7E-08 64.5 11.7 138 142-323 7-159 (348)
180 cd01130 VirB11-like_ATPase Typ 97.2 0.001 2.2E-08 62.1 7.6 132 141-332 24-157 (186)
181 KOG3347 Predicted nucleotide k 97.2 0.0023 5E-08 59.3 8.9 33 145-184 10-42 (176)
182 COG0324 MiaA tRNA delta(2)-iso 97.1 0.0012 2.5E-08 67.4 7.5 86 141-237 2-102 (308)
183 COG1072 CoaA Panthothenate kin 97.1 0.0094 2E-07 59.9 13.4 156 138-330 78-239 (283)
184 PHA03132 thymidine kinase; Pro 97.1 0.022 4.7E-07 62.8 16.8 24 143-166 258-281 (580)
185 smart00763 AAA_PrkA PrkA AAA d 97.1 0.0011 2.3E-08 69.0 6.5 45 109-167 59-103 (361)
186 PRK00771 signal recognition pa 97.0 0.0012 2.5E-08 70.4 6.6 44 140-185 93-136 (437)
187 TIGR01618 phage_P_loop phage n 97.0 0.00086 1.9E-08 65.3 5.1 35 140-183 10-44 (220)
188 PRK14729 miaA tRNA delta(2)-is 97.0 0.0019 4E-08 65.7 7.6 85 141-237 3-102 (300)
189 PF01745 IPT: Isopentenyl tran 96.9 0.01 2.2E-07 57.9 11.6 35 143-184 2-36 (233)
190 COG0552 FtsY Signal recognitio 96.9 0.0088 1.9E-07 61.6 11.6 90 139-236 136-229 (340)
191 PLN03046 D-glycerate 3-kinase; 96.9 0.0013 2.8E-08 69.8 5.7 43 140-184 210-252 (460)
192 PRK12724 flagellar biosynthesi 96.9 0.0051 1.1E-07 65.3 10.1 44 141-185 222-265 (432)
193 PLN02796 D-glycerate 3-kinase 96.9 0.0014 3E-08 67.9 5.4 43 140-184 98-140 (347)
194 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0013 2.8E-08 59.4 4.3 29 140-168 20-48 (133)
195 PF13521 AAA_28: AAA domain; P 96.8 0.0064 1.4E-07 55.1 8.8 21 145-165 2-22 (163)
196 PRK09435 membrane ATPase/prote 96.8 0.0012 2.6E-08 67.9 4.5 42 139-182 53-94 (332)
197 PRK13768 GTPase; Provisional 96.7 0.0019 4.1E-08 63.7 5.1 41 141-183 1-41 (253)
198 COG1936 Predicted nucleotide k 96.7 0.0019 4.1E-08 60.9 4.8 23 144-167 2-24 (180)
199 TIGR03499 FlhF flagellar biosy 96.7 0.002 4.3E-08 64.6 5.2 45 140-184 192-236 (282)
200 KOG3062 RNA polymerase II elon 96.7 0.0054 1.2E-07 60.2 8.0 81 144-238 3-84 (281)
201 cd01120 RecA-like_NTPases RecA 96.7 0.0016 3.5E-08 56.9 4.1 38 144-183 1-38 (165)
202 cd00009 AAA The AAA+ (ATPases 96.7 0.0023 5E-08 54.1 4.6 41 141-183 18-58 (151)
203 PRK12723 flagellar biosynthesi 96.7 0.0056 1.2E-07 64.3 8.4 46 140-185 172-219 (388)
204 PRK11889 flhF flagellar biosyn 96.7 0.0022 4.7E-08 67.8 5.1 43 140-184 239-281 (436)
205 PRK12269 bifunctional cytidyla 96.6 0.0018 3.9E-08 74.2 4.6 34 143-183 35-68 (863)
206 TIGR00101 ureG urease accessor 96.6 0.0032 7E-08 59.9 5.4 40 142-184 1-40 (199)
207 cd01394 radB RadB. The archaea 96.6 0.0033 7.1E-08 59.6 5.3 41 140-182 17-57 (218)
208 TIGR00750 lao LAO/AO transport 96.6 0.0032 7E-08 63.4 5.5 49 133-183 25-73 (300)
209 PF03308 ArgK: ArgK protein; 96.6 0.0017 3.8E-08 64.7 3.5 112 140-264 27-154 (266)
210 COG1120 FepC ABC-type cobalami 96.6 0.0027 5.9E-08 63.3 4.8 47 135-184 21-67 (258)
211 COG3709 Uncharacterized compon 96.6 0.0082 1.8E-07 56.4 7.6 26 141-166 4-29 (192)
212 PF13555 AAA_29: P-loop contai 96.5 0.0023 4.9E-08 50.6 3.2 24 143-166 24-47 (62)
213 COG1126 GlnQ ABC-type polar am 96.5 0.003 6.5E-08 61.7 4.7 48 133-183 19-66 (240)
214 PRK14723 flhF flagellar biosyn 96.5 0.041 8.8E-07 62.5 14.2 44 141-184 184-227 (767)
215 PRK05800 cobU adenosylcobinami 96.5 0.0026 5.6E-08 59.3 3.9 34 144-182 3-36 (170)
216 PF03029 ATP_bind_1: Conserved 96.5 0.0025 5.4E-08 62.5 4.0 34 147-182 1-34 (238)
217 PRK06995 flhF flagellar biosyn 96.5 0.0089 1.9E-07 64.5 8.5 44 141-184 255-298 (484)
218 TIGR02237 recomb_radB DNA repa 96.5 0.0041 8.8E-08 58.5 5.3 42 140-183 10-51 (209)
219 cd01124 KaiC KaiC is a circadi 96.5 0.0031 6.7E-08 57.6 4.3 38 144-183 1-38 (187)
220 KOG0780 Signal recognition par 96.4 0.02 4.3E-07 60.1 10.2 92 140-239 99-195 (483)
221 cd03225 ABC_cobalt_CbiO_domain 96.4 0.0038 8.2E-08 58.8 4.7 47 134-183 19-65 (211)
222 PF00005 ABC_tran: ABC transpo 96.4 0.0018 3.9E-08 56.5 2.3 42 140-184 9-50 (137)
223 COG1703 ArgK Putative periplas 96.4 0.0021 4.6E-08 65.2 3.0 124 132-264 41-176 (323)
224 cd01131 PilT Pilus retraction 96.4 0.0026 5.6E-08 60.2 3.5 23 144-166 3-25 (198)
225 KOG1532 GTPase XAB1, interacts 96.4 0.016 3.5E-07 58.6 9.0 40 140-181 17-56 (366)
226 KOG2134 Polynucleotide kinase 96.4 0.008 1.7E-07 62.8 7.1 78 140-252 267-344 (422)
227 TIGR01166 cbiO cobalt transpor 96.4 0.0038 8.1E-08 58.0 4.4 42 139-183 15-56 (190)
228 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0037 8E-08 59.2 4.4 46 135-183 23-68 (218)
229 PRK09087 hypothetical protein; 96.4 0.016 3.4E-07 56.3 8.8 84 144-240 46-129 (226)
230 PRK10751 molybdopterin-guanine 96.4 0.0035 7.7E-08 58.9 4.1 27 140-166 4-30 (173)
231 cd03226 ABC_cobalt_CbiO_domain 96.4 0.0039 8.4E-08 58.6 4.3 42 139-183 23-64 (205)
232 PRK04296 thymidine kinase; Pro 96.3 0.0047 1E-07 58.1 4.8 37 142-180 2-38 (190)
233 cd03301 ABC_MalK_N The N-termi 96.3 0.0043 9.4E-08 58.5 4.5 41 140-183 24-64 (213)
234 cd01918 HprK_C HprK/P, the bif 96.3 0.004 8.6E-08 57.3 4.1 34 142-183 14-47 (149)
235 cd03259 ABC_Carb_Solutes_like 96.3 0.0044 9.5E-08 58.5 4.5 41 140-183 24-64 (213)
236 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0042 9.1E-08 54.1 4.0 35 140-183 13-47 (107)
237 COG3839 MalK ABC-type sugar tr 96.3 0.0039 8.4E-08 64.4 4.4 54 133-189 20-73 (338)
238 PF13173 AAA_14: AAA domain 96.3 0.0051 1.1E-07 53.8 4.6 38 143-183 3-40 (128)
239 TIGR02673 FtsE cell division A 96.3 0.0044 9.6E-08 58.5 4.5 41 140-183 26-66 (214)
240 PF05496 RuvB_N: Holliday junc 96.3 0.0073 1.6E-07 59.3 6.0 39 142-185 50-88 (233)
241 PRK08099 bifunctional DNA-bind 96.3 0.014 3E-07 61.6 8.5 27 141-167 218-244 (399)
242 COG0396 sufC Cysteine desulfur 96.3 0.0037 8E-08 61.5 3.8 49 140-189 28-76 (251)
243 cd03292 ABC_FtsE_transporter F 96.3 0.0045 9.8E-08 58.3 4.4 41 140-183 25-65 (214)
244 PF13401 AAA_22: AAA domain; P 96.3 0.0033 7.1E-08 54.0 3.1 43 141-183 3-48 (131)
245 PRK13900 type IV secretion sys 96.3 0.025 5.4E-07 58.2 10.1 27 141-167 159-185 (332)
246 cd03269 ABC_putative_ATPase Th 96.3 0.005 1.1E-07 58.0 4.6 41 140-183 24-64 (210)
247 cd03263 ABC_subfamily_A The AB 96.3 0.005 1.1E-07 58.4 4.6 42 139-183 25-66 (220)
248 cd03261 ABC_Org_Solvent_Resist 96.3 0.0046 9.9E-08 59.4 4.4 41 140-183 24-64 (235)
249 cd03219 ABC_Mj1267_LivG_branch 96.3 0.0045 9.8E-08 59.3 4.3 41 140-183 24-64 (236)
250 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.0047 1E-07 59.4 4.4 42 139-183 24-65 (236)
251 PHA00729 NTP-binding motif con 96.3 0.0035 7.6E-08 61.3 3.5 25 142-166 17-41 (226)
252 cd03224 ABC_TM1139_LivF_branch 96.3 0.0051 1.1E-07 58.3 4.6 47 134-183 18-64 (222)
253 TIGR02315 ABC_phnC phosphonate 96.3 0.0048 1E-07 59.4 4.4 41 140-183 26-66 (243)
254 COG1660 Predicted P-loop-conta 96.3 0.071 1.5E-06 53.4 12.6 23 143-165 2-24 (286)
255 cd03256 ABC_PhnC_transporter A 96.3 0.005 1.1E-07 59.1 4.5 41 140-183 25-65 (241)
256 PRK04195 replication factor C 96.3 0.006 1.3E-07 65.4 5.6 40 142-186 39-78 (482)
257 PF02367 UPF0079: Uncharacteri 96.3 0.0047 1E-07 55.1 4.0 29 140-168 13-41 (123)
258 PF07728 AAA_5: AAA domain (dy 96.3 0.0049 1.1E-07 54.1 4.1 33 145-182 2-34 (139)
259 cd03258 ABC_MetN_methionine_tr 96.2 0.0052 1.1E-07 58.9 4.6 42 139-183 28-69 (233)
260 cd03264 ABC_drug_resistance_li 96.2 0.0052 1.1E-07 57.9 4.5 40 140-183 24-63 (211)
261 cd03235 ABC_Metallic_Cations A 96.2 0.0048 1E-07 58.2 4.3 45 135-182 18-62 (213)
262 TIGR00960 3a0501s02 Type II (G 96.2 0.005 1.1E-07 58.3 4.4 42 139-183 26-67 (216)
263 PF13245 AAA_19: Part of AAA d 96.2 0.0077 1.7E-07 49.0 4.9 25 142-166 10-34 (76)
264 PF13191 AAA_16: AAA ATPase do 96.2 0.0038 8.3E-08 56.5 3.4 27 140-166 22-48 (185)
265 cd03262 ABC_HisP_GlnQ_permease 96.2 0.0055 1.2E-07 57.7 4.6 41 140-183 24-64 (213)
266 TIGR02211 LolD_lipo_ex lipopro 96.2 0.0054 1.2E-07 58.1 4.6 47 134-183 23-69 (221)
267 PF05729 NACHT: NACHT domain 96.2 0.0038 8.1E-08 55.2 3.3 24 143-166 1-24 (166)
268 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.0046 1E-07 58.4 4.1 42 140-183 36-77 (226)
269 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.005 1.1E-07 58.6 4.3 40 140-182 28-67 (220)
270 PRK10584 putative ABC transpor 96.2 0.0054 1.2E-07 58.5 4.5 47 134-183 28-74 (228)
271 cd03257 ABC_NikE_OppD_transpor 96.2 0.0053 1.1E-07 58.3 4.4 47 134-183 23-69 (228)
272 TIGR03410 urea_trans_UrtE urea 96.2 0.0055 1.2E-07 58.6 4.5 42 139-183 23-64 (230)
273 PRK09361 radB DNA repair and r 96.2 0.0071 1.5E-07 57.7 5.2 42 140-183 21-62 (225)
274 cd03265 ABC_DrrA DrrA is the A 96.2 0.0057 1.2E-07 58.1 4.6 46 135-183 19-64 (220)
275 cd03229 ABC_Class3 This class 96.2 0.0059 1.3E-07 56.4 4.5 41 140-183 24-64 (178)
276 cd00544 CobU Adenosylcobinamid 96.2 0.0052 1.1E-07 57.3 4.1 33 144-181 1-33 (169)
277 cd03296 ABC_CysA_sulfate_impor 96.2 0.0055 1.2E-07 59.1 4.4 47 134-183 20-66 (239)
278 cd03247 ABCC_cytochrome_bd The 96.2 0.0064 1.4E-07 56.1 4.7 46 135-183 21-66 (178)
279 cd03218 ABC_YhbG The ABC trans 96.2 0.0059 1.3E-07 58.3 4.6 41 140-183 24-64 (232)
280 cd03268 ABC_BcrA_bacitracin_re 96.2 0.0065 1.4E-07 57.2 4.8 41 140-183 24-64 (208)
281 cd03295 ABC_OpuCA_Osmoprotecti 96.2 0.0061 1.3E-07 58.9 4.7 47 134-183 19-65 (242)
282 cd03246 ABCC_Protease_Secretio 96.2 0.0071 1.5E-07 55.6 4.9 41 140-183 26-66 (173)
283 cd01129 PulE-GspE PulE/GspE Th 96.2 0.017 3.7E-07 57.5 7.9 94 143-254 81-175 (264)
284 KOG3308 Uncharacterized protei 96.2 0.0058 1.2E-07 59.0 4.3 38 141-184 3-40 (225)
285 PRK14250 phosphate ABC transpo 96.2 0.0059 1.3E-07 59.1 4.5 41 140-183 27-67 (241)
286 PRK11629 lolD lipoprotein tran 96.2 0.0059 1.3E-07 58.6 4.4 47 134-183 27-73 (233)
287 PRK13538 cytochrome c biogenes 96.2 0.0064 1.4E-07 57.3 4.6 47 134-183 19-65 (204)
288 PRK13541 cytochrome c biogenes 96.2 0.007 1.5E-07 56.6 4.8 41 140-183 24-64 (195)
289 TIGR03015 pepcterm_ATPase puta 96.2 0.0043 9.4E-08 60.2 3.5 26 141-166 42-67 (269)
290 cd03214 ABC_Iron-Siderophores_ 96.2 0.0067 1.5E-07 56.1 4.6 41 140-183 23-63 (180)
291 TIGR01277 thiQ thiamine ABC tr 96.1 0.0061 1.3E-07 57.7 4.4 41 140-183 22-62 (213)
292 cd03251 ABCC_MsbA MsbA is an e 96.1 0.0063 1.4E-07 58.2 4.5 41 140-183 26-66 (234)
293 cd03298 ABC_ThiQ_thiamine_tran 96.1 0.0063 1.4E-07 57.4 4.5 41 140-183 22-62 (211)
294 TIGR01189 ccmA heme ABC export 96.1 0.0067 1.4E-07 56.8 4.6 42 139-183 23-64 (198)
295 cd03260 ABC_PstB_phosphate_tra 96.1 0.0068 1.5E-07 57.8 4.7 44 140-183 24-69 (227)
296 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.0064 1.4E-07 60.5 4.6 50 131-183 19-68 (254)
297 TIGR03608 L_ocin_972_ABC putat 96.1 0.0065 1.4E-07 56.9 4.4 40 140-182 22-61 (206)
298 PRK05201 hslU ATP-dependent pr 96.1 0.013 2.9E-07 62.3 7.2 39 141-184 49-87 (443)
299 PRK10247 putative ABC transpor 96.1 0.007 1.5E-07 58.0 4.7 42 139-183 30-71 (225)
300 PRK14722 flhF flagellar biosyn 96.1 0.0071 1.5E-07 63.3 5.1 45 140-184 135-179 (374)
301 TIGR01184 ntrCD nitrate transp 96.1 0.0066 1.4E-07 58.4 4.5 41 140-183 9-49 (230)
302 cd03254 ABCC_Glucan_exporter_l 96.1 0.0066 1.4E-07 57.9 4.5 44 137-183 24-67 (229)
303 cd03230 ABC_DR_subfamily_A Thi 96.1 0.0071 1.5E-07 55.6 4.5 44 137-183 21-64 (173)
304 cd03215 ABC_Carb_Monos_II This 96.1 0.007 1.5E-07 56.1 4.4 41 140-183 24-64 (182)
305 cd03252 ABCC_Hemolysin The ABC 96.1 0.0069 1.5E-07 58.1 4.6 41 140-183 26-66 (237)
306 PRK13540 cytochrome c biogenes 96.1 0.0078 1.7E-07 56.5 4.8 41 140-183 25-65 (200)
307 COG0467 RAD55 RecA-superfamily 96.1 0.02 4.4E-07 56.1 7.9 75 140-239 21-95 (260)
308 PRK10771 thiQ thiamine transpo 96.1 0.007 1.5E-07 58.1 4.6 41 140-183 23-63 (232)
309 PRK05703 flhF flagellar biosyn 96.1 0.017 3.6E-07 61.4 7.8 43 142-184 221-263 (424)
310 cd03228 ABCC_MRP_Like The MRP 96.1 0.0079 1.7E-07 55.2 4.7 46 135-183 21-66 (171)
311 COG0378 HypB Ni2+-binding GTPa 96.1 0.0093 2E-07 57.3 5.1 45 140-187 10-55 (202)
312 KOG0744 AAA+-type ATPase [Post 96.1 0.027 5.7E-07 58.2 8.7 25 142-166 177-201 (423)
313 PRK10895 lipopolysaccharide AB 96.0 0.0073 1.6E-07 58.2 4.5 41 140-183 27-67 (241)
314 PRK11264 putative amino-acid A 96.0 0.0072 1.6E-07 58.5 4.5 41 140-183 27-67 (250)
315 PRK12726 flagellar biosynthesi 96.0 0.0081 1.8E-07 63.2 5.1 44 140-185 204-247 (407)
316 cd03266 ABC_NatA_sodium_export 96.0 0.0075 1.6E-07 57.1 4.5 47 133-182 22-68 (218)
317 PF13476 AAA_23: AAA domain; P 96.0 0.0057 1.2E-07 55.8 3.5 27 141-167 18-44 (202)
318 cd03222 ABC_RNaseL_inhibitor T 96.0 0.0077 1.7E-07 56.5 4.5 38 140-180 23-60 (177)
319 cd03244 ABCC_MRP_domain2 Domai 96.0 0.0078 1.7E-07 57.1 4.6 41 140-183 28-68 (221)
320 cd03238 ABC_UvrA The excision 96.0 0.0054 1.2E-07 57.5 3.4 31 134-164 13-43 (176)
321 cd03253 ABCC_ATM1_transporter 96.0 0.0075 1.6E-07 57.8 4.5 41 140-183 25-65 (236)
322 PLN00020 ribulose bisphosphate 96.0 0.018 3.8E-07 60.5 7.5 39 140-183 146-184 (413)
323 PRK11300 livG leucine/isoleuci 96.0 0.0075 1.6E-07 58.6 4.5 41 140-183 29-69 (255)
324 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.0 0.0079 1.7E-07 57.8 4.6 41 140-183 27-67 (238)
325 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.0083 1.8E-07 59.3 4.9 41 140-182 34-74 (259)
326 cd03248 ABCC_TAP TAP, the Tran 96.0 0.0084 1.8E-07 57.1 4.7 44 137-183 35-78 (226)
327 cd03297 ABC_ModC_molybdenum_tr 96.0 0.0079 1.7E-07 56.9 4.5 39 140-182 22-60 (214)
328 PRK10646 ADP-binding protein; 96.0 0.0081 1.8E-07 55.5 4.4 29 140-168 26-54 (153)
329 cd03283 ABC_MutS-like MutS-lik 96.0 0.0052 1.1E-07 58.5 3.2 24 142-165 25-48 (199)
330 cd03250 ABCC_MRP_domain1 Domai 96.0 0.0084 1.8E-07 56.3 4.6 43 134-179 23-65 (204)
331 PRK11248 tauB taurine transpor 96.0 0.008 1.7E-07 59.0 4.6 45 134-181 19-63 (255)
332 PRK09493 glnQ glutamine ABC tr 96.0 0.0079 1.7E-07 57.9 4.4 41 140-183 25-65 (240)
333 TIGR00635 ruvB Holliday juncti 96.0 0.023 5.1E-07 56.5 7.9 27 141-167 29-55 (305)
334 TIGR02770 nickel_nikD nickel i 96.0 0.0081 1.7E-07 57.7 4.4 41 140-183 10-54 (230)
335 cd03216 ABC_Carb_Monos_I This 96.0 0.0085 1.8E-07 54.8 4.4 42 139-183 23-64 (163)
336 PRK11124 artP arginine transpo 96.0 0.0083 1.8E-07 57.9 4.5 41 140-183 26-66 (242)
337 TIGR02655 circ_KaiC circadian 96.0 0.015 3.2E-07 62.6 6.8 43 140-184 261-303 (484)
338 cd03114 ArgK-like The function 96.0 0.007 1.5E-07 55.0 3.7 36 145-182 2-37 (148)
339 cd03234 ABCG_White The White s 96.0 0.0086 1.9E-07 57.3 4.5 45 139-183 30-74 (226)
340 COG2884 FtsE Predicted ATPase 96.0 0.011 2.3E-07 57.1 5.0 41 140-183 26-66 (223)
341 cd03245 ABCC_bacteriocin_expor 96.0 0.0089 1.9E-07 56.6 4.6 41 140-183 28-68 (220)
342 PRK11701 phnK phosphonate C-P 95.9 0.009 1.9E-07 58.3 4.7 41 139-182 29-69 (258)
343 PRK10908 cell division protein 95.9 0.0085 1.8E-07 57.0 4.4 41 140-183 26-66 (222)
344 PRK10575 iron-hydroxamate tran 95.9 0.0076 1.7E-07 59.2 4.2 41 140-183 35-75 (265)
345 TIGR03005 ectoine_ehuA ectoine 95.9 0.0083 1.8E-07 58.3 4.4 42 139-183 23-64 (252)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.0087 1.9E-07 53.8 4.2 40 138-180 22-61 (144)
347 COG1124 DppF ABC-type dipeptid 95.9 0.0098 2.1E-07 58.9 4.8 41 140-183 31-71 (252)
348 COG1855 ATPase (PilT family) [ 95.9 0.005 1.1E-07 65.6 3.0 25 142-166 263-287 (604)
349 PRK13539 cytochrome c biogenes 95.9 0.0095 2.1E-07 56.4 4.6 41 140-183 26-66 (207)
350 cd02034 CooC The accessory pro 95.9 0.01 2.3E-07 51.9 4.5 36 145-182 2-37 (116)
351 PF06745 KaiC: KaiC; InterPro 95.9 0.0068 1.5E-07 57.9 3.6 42 140-183 17-59 (226)
352 COG4619 ABC-type uncharacteriz 95.9 0.012 2.6E-07 55.9 5.1 48 133-183 20-67 (223)
353 cd03223 ABCD_peroxisomal_ALDP 95.9 0.0095 2.1E-07 54.6 4.4 43 134-179 19-61 (166)
354 PRK13638 cbiO cobalt transport 95.9 0.0082 1.8E-07 59.2 4.3 41 140-183 25-65 (271)
355 TIGR02324 CP_lyasePhnL phospho 95.9 0.0097 2.1E-07 56.6 4.6 44 133-179 25-68 (224)
356 TIGR03771 anch_rpt_ABC anchore 95.9 0.01 2.2E-07 56.9 4.8 40 141-183 5-44 (223)
357 TIGR03411 urea_trans_UrtD urea 95.9 0.0098 2.1E-07 57.3 4.7 44 137-183 23-66 (242)
358 PF13189 Cytidylate_kin2: Cyti 95.9 0.057 1.2E-06 50.3 9.6 33 144-183 1-33 (179)
359 cd03243 ABC_MutS_homologs The 95.9 0.0061 1.3E-07 57.5 3.2 25 140-164 27-51 (202)
360 PF13479 AAA_24: AAA domain 95.9 0.0081 1.8E-07 57.5 4.0 33 140-182 1-33 (213)
361 PHA02544 44 clamp loader, smal 95.9 0.01 2.2E-07 59.3 5.0 38 140-182 41-78 (316)
362 COG1125 OpuBA ABC-type proline 95.9 0.012 2.7E-07 58.9 5.3 47 140-189 25-71 (309)
363 COG3911 Predicted ATPase [Gene 95.9 0.0086 1.9E-07 55.6 3.9 23 143-165 10-32 (183)
364 PRK15177 Vi polysaccharide exp 95.9 0.0067 1.4E-07 57.9 3.4 27 140-166 11-37 (213)
365 TIGR02323 CP_lyasePhnK phospho 95.9 0.0092 2E-07 57.9 4.4 44 134-180 21-64 (253)
366 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.012 2.6E-07 57.2 5.1 42 140-183 19-60 (237)
367 COG4615 PvdE ABC-type sideroph 95.9 0.013 2.7E-07 61.9 5.5 59 134-195 341-400 (546)
368 cd03294 ABC_Pro_Gly_Bertaine T 95.8 0.0098 2.1E-07 58.7 4.5 47 134-183 42-88 (269)
369 cd00984 DnaB_C DnaB helicase C 95.8 0.012 2.6E-07 56.4 4.9 43 140-183 11-53 (242)
370 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.8 0.0095 2.1E-07 57.2 4.3 45 133-180 39-83 (224)
371 cd03272 ABC_SMC3_euk Eukaryoti 95.8 0.0062 1.3E-07 58.6 3.0 24 141-164 22-45 (243)
372 PRK13548 hmuV hemin importer A 95.8 0.0099 2.1E-07 58.3 4.4 46 135-183 21-66 (258)
373 cd03267 ABC_NatA_like Similar 95.8 0.01 2.2E-07 57.4 4.3 39 140-181 45-83 (236)
374 COG4240 Predicted kinase [Gene 95.8 0.0091 2E-07 58.9 4.0 46 138-184 46-91 (300)
375 cd03290 ABCC_SUR1_N The SUR do 95.8 0.012 2.6E-07 55.9 4.8 48 133-183 18-65 (218)
376 PRK13648 cbiO cobalt transport 95.8 0.01 2.2E-07 58.5 4.5 41 140-183 33-73 (269)
377 PRK11614 livF leucine/isoleuci 95.8 0.01 2.2E-07 57.0 4.3 44 137-183 26-69 (237)
378 PRK13886 conjugal transfer pro 95.8 0.078 1.7E-06 52.5 10.5 90 142-239 3-92 (241)
379 PRK11831 putative ABC transpor 95.8 0.01 2.2E-07 58.5 4.4 44 137-183 28-71 (269)
380 PRK08533 flagellar accessory p 95.8 0.014 3E-07 56.8 5.2 42 140-183 22-63 (230)
381 TIGR01188 drrA daunorubicin re 95.8 0.01 2.2E-07 59.6 4.5 41 140-183 17-57 (302)
382 COG2805 PilT Tfp pilus assembl 95.8 0.067 1.5E-06 54.8 10.2 99 143-254 126-224 (353)
383 PRK13649 cbiO cobalt transport 95.8 0.0099 2.1E-07 58.8 4.3 41 140-183 31-71 (280)
384 PRK13543 cytochrome c biogenes 95.8 0.01 2.2E-07 56.4 4.2 47 134-183 29-75 (214)
385 PRK15056 manganese/iron transp 95.8 0.01 2.2E-07 58.7 4.3 47 134-183 25-71 (272)
386 PTZ00202 tuzin; Provisional 95.8 0.051 1.1E-06 58.5 9.7 36 141-181 285-320 (550)
387 PRK13632 cbiO cobalt transport 95.8 0.011 2.4E-07 58.3 4.6 42 139-183 32-73 (271)
388 cd03300 ABC_PotA_N PotA is an 95.8 0.011 2.4E-07 56.8 4.4 44 137-183 21-64 (232)
389 PRK15112 antimicrobial peptide 95.8 0.011 2.5E-07 58.1 4.6 44 137-183 34-77 (267)
390 PF03266 NTPase_1: NTPase; In 95.8 0.0077 1.7E-07 56.1 3.2 22 145-166 2-23 (168)
391 PRK14721 flhF flagellar biosyn 95.8 0.039 8.5E-07 58.7 8.8 45 140-184 189-233 (420)
392 PRK08084 DNA replication initi 95.8 0.1 2.3E-06 50.7 11.2 39 143-183 46-84 (235)
393 TIGR00972 3a0107s01c2 phosphat 95.7 0.011 2.5E-07 57.2 4.5 41 140-183 25-70 (247)
394 PRK11247 ssuB aliphatic sulfon 95.7 0.011 2.3E-07 58.4 4.3 40 140-182 36-75 (257)
395 PRK12323 DNA polymerase III su 95.7 0.18 3.9E-06 56.6 14.1 54 93-168 11-64 (700)
396 TIGR01650 PD_CobS cobaltochela 95.7 0.01 2.2E-07 61.1 4.3 33 144-181 66-98 (327)
397 TIGR01978 sufC FeS assembly AT 95.7 0.0081 1.8E-07 57.7 3.4 43 140-183 24-66 (243)
398 PRK06067 flagellar accessory p 95.7 0.014 3E-07 56.2 5.0 42 140-183 23-64 (234)
399 PRK00080 ruvB Holliday junctio 95.7 0.023 5E-07 57.7 6.8 26 142-167 51-76 (328)
400 COG1618 Predicted nucleotide k 95.7 0.01 2.2E-07 55.7 3.8 27 140-166 3-29 (179)
401 cd03369 ABCC_NFT1 Domain 2 of 95.7 0.013 2.9E-07 55.1 4.7 40 140-182 32-71 (207)
402 TIGR03707 PPK2_P_aer polyphosp 95.7 0.28 6E-06 48.3 14.0 157 140-351 29-189 (230)
403 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.015 3.3E-07 55.5 5.1 42 140-183 18-59 (229)
404 PRK14242 phosphate transporter 95.7 0.0082 1.8E-07 58.3 3.3 44 140-183 30-75 (253)
405 PRK13635 cbiO cobalt transport 95.7 0.012 2.6E-07 58.6 4.6 46 135-183 26-71 (279)
406 PRK10463 hydrogenase nickel in 95.7 0.016 3.4E-07 58.8 5.4 41 140-183 102-142 (290)
407 cd03280 ABC_MutS2 MutS2 homolo 95.7 0.0091 2E-07 56.3 3.5 21 143-163 29-49 (200)
408 cd03232 ABC_PDR_domain2 The pl 95.7 0.0087 1.9E-07 56.0 3.3 43 140-183 31-73 (192)
409 PRK05973 replicative DNA helic 95.7 0.014 2.9E-07 57.6 4.7 42 140-183 62-103 (237)
410 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.017 3.7E-07 55.1 5.3 43 140-182 17-63 (235)
411 PRK10619 histidine/lysine/argi 95.7 0.012 2.7E-07 57.4 4.4 42 139-183 28-69 (257)
412 TIGR03740 galliderm_ABC gallid 95.7 0.013 2.9E-07 55.8 4.5 40 140-182 24-63 (223)
413 cd03231 ABC_CcmA_heme_exporter 95.7 0.014 2.9E-07 55.0 4.5 41 140-183 24-64 (201)
414 cd03237 ABC_RNaseL_inhibitor_d 95.7 0.013 2.7E-07 57.5 4.4 37 141-180 24-60 (246)
415 COG0802 Predicted ATPase or ki 95.7 0.015 3.3E-07 53.5 4.6 28 140-167 23-50 (149)
416 TIGR00968 3a0106s01 sulfate AB 95.7 0.013 2.9E-07 56.5 4.5 41 140-183 24-64 (237)
417 COG1419 FlhF Flagellar GTP-bin 95.7 0.059 1.3E-06 56.9 9.6 44 141-184 202-245 (407)
418 PRK10419 nikE nickel transport 95.7 0.013 2.8E-07 57.9 4.5 48 133-183 29-76 (268)
419 PRK13645 cbiO cobalt transport 95.7 0.012 2.6E-07 58.6 4.4 39 140-181 35-73 (289)
420 PRK14247 phosphate ABC transpo 95.7 0.0092 2E-07 57.8 3.4 44 140-183 27-72 (250)
421 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.014 3.1E-07 52.5 4.4 41 140-183 23-63 (157)
422 PF03215 Rad17: Rad17 cell cyc 95.6 0.0097 2.1E-07 64.8 3.9 26 142-167 45-70 (519)
423 PRK10418 nikD nickel transport 95.6 0.014 3E-07 57.0 4.6 44 140-183 27-71 (254)
424 PRK11231 fecE iron-dicitrate t 95.6 0.013 2.8E-07 57.2 4.3 41 140-183 26-66 (255)
425 COG3840 ThiQ ABC-type thiamine 95.6 0.012 2.5E-07 56.6 3.8 46 140-188 23-68 (231)
426 PRK14961 DNA polymerase III su 95.6 0.018 4E-07 59.5 5.7 28 140-167 36-63 (363)
427 PF08477 Miro: Miro-like prote 95.6 0.01 2.2E-07 50.1 3.1 22 145-166 2-23 (119)
428 TIGR01288 nodI ATP-binding ABC 95.6 0.013 2.8E-07 58.9 4.5 47 134-183 22-68 (303)
429 PRK14960 DNA polymerase III su 95.6 0.2 4.3E-06 56.3 13.9 29 140-168 35-63 (702)
430 CHL00195 ycf46 Ycf46; Provisio 95.6 0.031 6.7E-07 60.5 7.6 38 140-182 257-294 (489)
431 TIGR00390 hslU ATP-dependent p 95.6 0.012 2.6E-07 62.6 4.2 27 141-167 46-72 (441)
432 TIGR01420 pilT_fam pilus retra 95.6 0.049 1.1E-06 56.1 8.7 100 142-254 122-221 (343)
433 cd04163 Era Era subfamily. Er 95.6 0.011 2.4E-07 51.2 3.4 24 142-165 3-26 (168)
434 TIGR03873 F420-0_ABC_ATP propo 95.6 0.014 3E-07 57.0 4.4 47 134-183 19-65 (256)
435 PF08298 AAA_PrkA: PrkA AAA do 95.6 0.025 5.4E-07 58.8 6.4 48 105-166 65-112 (358)
436 TIGR02640 gas_vesic_GvpN gas v 95.6 0.015 3.2E-07 57.5 4.7 32 145-181 24-55 (262)
437 PRK13633 cobalt transporter AT 95.6 0.014 3.1E-07 57.9 4.5 47 134-183 28-74 (280)
438 TIGR02769 nickel_nikE nickel i 95.6 0.014 3.1E-07 57.3 4.4 41 140-183 35-75 (265)
439 TIGR02881 spore_V_K stage V sp 95.6 0.012 2.7E-07 57.7 4.0 25 142-166 42-66 (261)
440 KOG1533 Predicted GTPase [Gene 95.6 0.0096 2.1E-07 58.9 3.1 36 142-182 2-40 (290)
441 PRK10744 pstB phosphate transp 95.6 0.01 2.2E-07 58.1 3.4 44 140-183 37-82 (260)
442 PRK13652 cbiO cobalt transport 95.5 0.015 3.2E-07 57.8 4.5 47 134-183 22-68 (277)
443 TIGR00176 mobB molybdopterin-g 95.5 0.014 3.1E-07 53.5 4.1 36 144-181 1-36 (155)
444 COG1136 SalX ABC-type antimicr 95.5 0.016 3.5E-07 56.8 4.6 43 137-182 26-68 (226)
445 PRK09544 znuC high-affinity zi 95.5 0.015 3.2E-07 57.1 4.4 43 134-179 22-64 (251)
446 PRK13637 cbiO cobalt transport 95.5 0.015 3.2E-07 58.1 4.5 42 140-184 31-72 (287)
447 PRK13547 hmuV hemin importer A 95.5 0.013 2.9E-07 58.2 4.1 42 139-183 24-73 (272)
448 PRK13647 cbiO cobalt transport 95.5 0.015 3.3E-07 57.6 4.5 44 137-183 26-69 (274)
449 PRK03992 proteasome-activating 95.5 0.012 2.7E-07 61.5 4.0 38 140-182 163-200 (389)
450 PRK14262 phosphate ABC transpo 95.5 0.011 2.3E-07 57.4 3.4 47 137-183 24-72 (250)
451 PRK12402 replication factor C 95.5 0.014 3.1E-07 58.4 4.3 39 145-183 39-77 (337)
452 COG3842 PotA ABC-type spermidi 95.5 0.017 3.6E-07 60.1 4.9 44 139-185 28-71 (352)
453 COG1116 TauB ABC-type nitrate/ 95.5 0.018 4E-07 57.0 4.9 50 131-183 18-67 (248)
454 PRK13650 cbiO cobalt transport 95.5 0.016 3.4E-07 57.7 4.5 41 140-183 31-71 (279)
455 PRK10253 iron-enterobactin tra 95.5 0.014 3.1E-07 57.3 4.2 41 140-183 31-71 (265)
456 PRK08903 DnaA regulatory inact 95.5 0.017 3.6E-07 55.2 4.5 40 142-183 42-81 (227)
457 PF07724 AAA_2: AAA domain (Cd 95.5 0.019 4.1E-07 53.6 4.7 42 143-185 4-45 (171)
458 PRK14241 phosphate transporter 95.5 0.011 2.5E-07 57.6 3.4 43 140-182 28-72 (258)
459 cd03233 ABC_PDR_domain1 The pl 95.5 0.011 2.3E-07 55.9 3.2 45 139-183 30-74 (202)
460 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.012 2.6E-07 56.6 3.4 22 142-163 29-50 (213)
461 COG4778 PhnL ABC-type phosphon 95.5 0.02 4.4E-07 54.5 4.8 43 134-179 29-71 (235)
462 PRK11153 metN DL-methionine tr 95.5 0.015 3.3E-07 59.7 4.4 46 135-183 24-69 (343)
463 PRK13646 cbiO cobalt transport 95.5 0.016 3.5E-07 57.8 4.5 41 140-183 31-71 (286)
464 TIGR02655 circ_KaiC circadian 95.5 0.017 3.7E-07 62.2 4.9 43 140-183 19-61 (484)
465 PTZ00454 26S protease regulato 95.5 0.037 8E-07 58.4 7.3 28 140-167 177-204 (398)
466 PRK13644 cbiO cobalt transport 95.5 0.017 3.6E-07 57.3 4.5 46 135-183 21-66 (274)
467 TIGR02868 CydC thiol reductant 95.5 0.014 3E-07 62.8 4.3 41 140-183 359-399 (529)
468 PRK14267 phosphate ABC transpo 95.4 0.012 2.6E-07 57.1 3.4 44 140-183 28-73 (253)
469 cd03278 ABC_SMC_barmotin Barmo 95.4 0.012 2.6E-07 55.8 3.3 22 144-165 24-45 (197)
470 PF13086 AAA_11: AAA domain; P 95.4 0.014 3.1E-07 54.1 3.8 25 142-166 17-41 (236)
471 KOG0733 Nuclear AAA ATPase (VC 95.4 0.13 2.9E-06 56.8 11.5 39 140-183 221-259 (802)
472 PRK13639 cbiO cobalt transport 95.4 0.016 3.6E-07 57.3 4.4 47 134-183 20-66 (275)
473 TIGR01241 FtsH_fam ATP-depende 95.4 0.032 6.9E-07 60.1 6.9 39 140-183 86-124 (495)
474 PRK14251 phosphate ABC transpo 95.4 0.013 2.7E-07 56.9 3.4 44 140-183 28-73 (251)
475 PRK14248 phosphate ABC transpo 95.4 0.013 2.7E-07 57.7 3.4 44 140-183 45-90 (268)
476 PRK05642 DNA replication initi 95.4 0.061 1.3E-06 52.3 8.2 94 143-239 46-141 (234)
477 PRK14261 phosphate ABC transpo 95.4 0.013 2.8E-07 57.0 3.4 26 140-165 30-55 (253)
478 TIGR02524 dot_icm_DotB Dot/Icm 95.4 0.012 2.7E-07 61.1 3.5 25 142-166 134-158 (358)
479 PRK12727 flagellar biosynthesi 95.4 0.02 4.4E-07 62.5 5.2 45 141-185 349-393 (559)
480 PRK14239 phosphate transporter 95.4 0.013 2.8E-07 56.8 3.4 43 140-183 29-74 (252)
481 TIGR01243 CDC48 AAA family ATP 95.4 0.035 7.5E-07 62.7 7.3 39 140-183 485-523 (733)
482 PRK04328 hypothetical protein; 95.4 0.021 4.6E-07 56.0 5.0 42 140-183 21-62 (249)
483 PRK14244 phosphate ABC transpo 95.4 0.013 2.8E-07 56.9 3.4 44 140-183 29-74 (251)
484 PRK13643 cbiO cobalt transport 95.4 0.015 3.4E-07 58.0 4.1 50 131-183 21-70 (288)
485 cd03273 ABC_SMC2_euk Eukaryoti 95.4 0.013 2.7E-07 57.3 3.3 27 141-167 24-50 (251)
486 PLN03025 replication factor C 95.4 0.052 1.1E-06 55.0 7.9 25 141-166 34-58 (319)
487 PRK14245 phosphate ABC transpo 95.4 0.013 2.7E-07 57.0 3.3 44 140-183 27-72 (250)
488 PRK14256 phosphate ABC transpo 95.4 0.013 2.8E-07 57.0 3.4 44 140-183 28-73 (252)
489 PRK14255 phosphate ABC transpo 95.4 0.012 2.7E-07 57.0 3.3 32 134-165 23-54 (252)
490 PRK14274 phosphate ABC transpo 95.4 0.013 2.8E-07 57.2 3.4 27 140-166 36-62 (259)
491 PRK13546 teichoic acids export 95.4 0.017 3.7E-07 57.2 4.3 46 132-180 40-85 (264)
492 COG4618 ArpD ABC-type protease 95.4 0.017 3.6E-07 62.5 4.4 43 142-187 362-404 (580)
493 TIGR02142 modC_ABC molybdenum 95.4 0.018 3.9E-07 59.4 4.5 41 140-183 21-61 (354)
494 TIGR01243 CDC48 AAA family ATP 95.4 0.04 8.6E-07 62.2 7.6 39 140-183 210-248 (733)
495 cd03299 ABC_ModC_like Archeal 95.4 0.019 4.1E-07 55.4 4.4 41 140-183 23-63 (235)
496 PRK14270 phosphate ABC transpo 95.4 0.014 2.9E-07 56.8 3.4 44 140-183 28-73 (251)
497 PRK14253 phosphate ABC transpo 95.4 0.014 3E-07 56.6 3.5 28 139-166 26-53 (249)
498 COG4559 ABC-type hemin transpo 95.4 0.019 4E-07 56.3 4.3 37 140-179 25-61 (259)
499 PRK14240 phosphate transporter 95.3 0.014 3E-07 56.6 3.4 44 140-183 27-72 (250)
500 PF00437 T2SE: Type II/IV secr 95.3 0.014 3E-07 57.4 3.5 27 141-167 126-152 (270)
No 1
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.94 E-value=8.6e-26 Score=206.46 Aligned_cols=173 Identities=23% Similarity=0.220 Sum_probs=143.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~l 220 (446)
+|++.+|+|+|||||||+...+...+. ++..+||+|++. ..+++. .| . ...-.+.+.+...
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~-----~~~~~VN~D~iA------~~i~p~-~p---~----~~~i~A~r~ai~~ 61 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLL-----PGIVFVNADEIA------AQISPD-NP---T----SAAIQAARVAIDR 61 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhc-----CCeEEECHHHHh------hhcCCC-Cc---h----HHHHHHHHHHHHH
Confidence 589999999999999999988766652 578999999984 446553 22 1 1133456677789
Q ss_pred HHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCC
Q 013289 221 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 300 (446)
Q Consensus 221 i~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~g 300 (446)
+..+++.|.+|.+|+||+.+++++.+.+ ++..|
T Consensus 62 i~~~I~~~~~F~~ETtLS~~s~~~~ik~-----------------------------------------------Ak~~G 94 (187)
T COG4185 62 IARLIDLGRPFIAETTLSGPSILELIKT-----------------------------------------------AKAAG 94 (187)
T ss_pred HHHHHHcCCCcceEEeeccchHHHHHHH-----------------------------------------------HHhCC
Confidence 9999999999999999999988776522 46789
Q ss_pred cEEEEEEEe-CCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHhHHHhhcccceEEEeecCCCCCCCeEEEEEeCCcc
Q 013289 301 YRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSN 379 (446)
Q Consensus 301 Y~I~lv~V~-~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~~~~~~~lvD~~~lydnn~~g~pp~lIa~~~~~~~ 379 (446)
|.|.+.++. -+++++++|+..|+..|||+||++++++||.|.+++++.+..|+|++.+|||++. .|++++...++..
T Consensus 95 f~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS~~--~~~lv~e~~~~~i 172 (187)
T COG4185 95 FYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADRATIYDNSRL--APRLVAEFSGGGI 172 (187)
T ss_pred eEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCCCC--CceEEEEeCCceE
Confidence 999997775 5799999999999999999999999999999999999999999999999996653 4999999987664
Q ss_pred ee
Q 013289 380 LL 381 (446)
Q Consensus 380 li 381 (446)
..
T Consensus 173 ~~ 174 (187)
T COG4185 173 IG 174 (187)
T ss_pred EE
Confidence 43
No 2
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.93 E-value=6.4e-25 Score=206.54 Aligned_cols=172 Identities=23% Similarity=0.330 Sum_probs=127.2
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHH
Q 013289 138 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 217 (446)
Q Consensus 138 ~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a 217 (446)
++..|++++++|+|||||||++..+...++ .+++++||+|+|+..+|.+.++... ++...+..++..+..++
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~----~~~~~~~~~~~~a~~~~ 82 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA----DPDEASELTQKEASRLA 82 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH----HCCCTHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh----hhhhhHHHHHHHHHHHH
Confidence 457899999999999999999999998862 2589999999999988877776542 22234566788888999
Q ss_pred HHHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhc
Q 013289 218 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 297 (446)
Q Consensus 218 ~~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~ 297 (446)
..+++.++++|.|||+|+||+++.+...+++. ++
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~----------------------------------------------~k 116 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIRE----------------------------------------------AK 116 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHH----------------------------------------------HH
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHH----------------------------------------------HH
Confidence 99999999999999999999998777655433 35
Q ss_pred CCCcEEEEEEEeCCHHHHHHHHHHhhhhc------CcccchhhhhhHHHHHHHhHHHhhc--ccceEEEeecCC
Q 013289 298 RKPYRIELVGVVCDAYLAVVRGIRRAIMM------KRAVRVNSQLKSHKRFANAFRNYCE--LVDNARLYCTNA 363 (446)
Q Consensus 298 ~~gY~I~lv~V~~d~elav~Rv~~R~~~g------GR~Vpv~~ql~r~~rf~~~~~~~~~--lvD~~~lydnn~ 363 (446)
..||.|++++|.+|+++++.|+..|..++ ||.||.+.+..+|..+.+++..... ++|.+.+||++.
T Consensus 117 ~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~v~~~~~~~~~~~~~~~~~~~~~~~~~d~i~v~d~~g 190 (199)
T PF06414_consen 117 AAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRFVPEEKHDRAYANLPETLEALENEKLFDRITVYDRDG 190 (199)
T ss_dssp CTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT-----HCCCHCCHHHHHHHHHHHHHCT--SEEEEE-TTS
T ss_pred cCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 68999999999999999999999999999 9999999999999999999987665 899999999663
No 3
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.71 E-value=4.9e-16 Score=153.80 Aligned_cols=201 Identities=19% Similarity=0.139 Sum_probs=135.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~l 220 (446)
+|.+|++.|+|||||||+++.|++++ +++.+||.|.++. .+...+..+...+..+. ...........
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~------~~~~~l~~D~~r~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 67 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKN------PKAVNVNRDDLRQ------SLFGHGEWGEYKFTKEK-EDLVTKAQEAA 67 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHC------CCCEEEeccHHHH------HhcCCCcccccccChHH-HHHHHHHHHHH
Confidence 47899999999999999999999986 2579999999843 33321100000111111 11123344556
Q ss_pred HHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCC
Q 013289 221 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 300 (446)
Q Consensus 221 i~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~g 300 (446)
+..++..|.+||+|+++..+..++.+..++ +..+
T Consensus 68 ~~~~l~~g~~vIid~~~~~~~~~~~~~~la----------------------------------------------~~~~ 101 (300)
T PHA02530 68 ALAALKSGKSVIISDTNLNPERRRKWKELA----------------------------------------------KELG 101 (300)
T ss_pred HHHHHHcCCeEEEeCCCCCHHHHHHHHHHH----------------------------------------------HHcC
Confidence 778889999999999999887776654433 2345
Q ss_pred cEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHhHHHhhcccceEEEeecCCCCCCCeEEEEEeCCcce
Q 013289 301 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKDGDSNL 380 (446)
Q Consensus 301 Y~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~~~~~~~lvD~~~lydnn~~g~pp~lIa~~~~~~~l 380 (446)
+.+.++++.+|.+++.+|...| ++|.+|.+.+.++++++...-....+ +|..+. +.++.++.+.+++...
T Consensus 102 ~~~~~v~l~~~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~~~~~~p------~~~~~~-~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 102 AEFEEKVFDVPVEELVKRNRKR---GERAVPEDVLRSMFKQMKEYRGLVWP------VYTADP-GLPKAVIFDIDGTLAK 171 (300)
T ss_pred CeEEEEEeCCCHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHhcCCCCc------eeccCC-CCCCEEEEECCCcCcC
Confidence 6778899999999999999999 57999988888877776643222122 233343 3567788888887655
Q ss_pred eeChhhHHHHHhhc-CCChhhhhhHhhhcCC
Q 013289 381 LVDSDEIKCLTRVG-SLNADADSVYELHSEP 410 (446)
Q Consensus 381 i~d~~~y~~~~~~~-~ln~~a~~~~ely~~~ 410 (446)
.....+|+...... .+.+.+...++.+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 202 (300)
T PHA02530 172 MGGRSPYDWTKVKEDKPNPMVVELVKMYKAA 202 (300)
T ss_pred CCCCCccchhhcccCCCChhHHHHHHHHHhC
Confidence 55555566555443 6777777766655443
No 4
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.66 E-value=1.4e-15 Score=133.49 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=90.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 223 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~ 223 (446)
||+|+|+|||||||+++.+++.+ ++.+|+.|.++ ..+...+.+ ......+. .......+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~-------~~~~i~~D~~~------~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 65 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL-------GAVVISQDEIR------RRLAGEDPP-SPSDYIEA-EERAYQILNAAIRK 65 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS-------TEEEEEHHHHH------HHHCCSSSG-CCCCCHHH-HHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC-------CCEEEeHHHHH------HHHcccccc-cchhHHHH-HHHHHHHHHHHHHH
Confidence 68999999999999999999886 38999999873 345442111 11111111 23344556668888
Q ss_pred HHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEE
Q 013289 224 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 303 (446)
Q Consensus 224 aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I 303 (446)
++..|.++|+|+|+..++.++.+.+++ +..||.+
T Consensus 66 ~l~~g~~~vvd~~~~~~~~r~~~~~~~----------------------------------------------~~~~~~~ 99 (143)
T PF13671_consen 66 ALRNGNSVVVDNTNLSREERARLRELA----------------------------------------------RKHGYPV 99 (143)
T ss_dssp HHHTT-EEEEESS--SHHHHHHHHHHH----------------------------------------------HHCTEEE
T ss_pred HHHcCCCceeccCcCCHHHHHHHHHHH----------------------------------------------HHcCCeE
Confidence 999999999999999887777665543 3567888
Q ss_pred EEEEEeCCHHHHHHHHHHhhhhcCcc
Q 013289 304 ELVGVVCDAYLAVVRGIRRAIMMKRA 329 (446)
Q Consensus 304 ~lv~V~~d~elav~Rv~~R~~~gGR~ 329 (446)
.++++++|.+++.+|...|...+++.
T Consensus 100 ~~v~l~~~~~~~~~R~~~R~~~~~~~ 125 (143)
T PF13671_consen 100 RVVYLDAPEETLRERLAQRNREGDKR 125 (143)
T ss_dssp EEEEECHHHHHHHHHHHTTHCCCTTS
T ss_pred EEEEEECCHHHHHHHHHhcCCccccc
Confidence 99999999999999999999877653
No 5
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.4e-14 Score=141.47 Aligned_cols=143 Identities=22% Similarity=0.282 Sum_probs=109.7
Q ss_pred chhhhHHHHhhhhchhhhhhhhhhHHHHHHHHH-HHHHHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHH
Q 013289 83 KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKD 161 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~r~~~~l~e-~~~~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~ 161 (446)
++---+-+--+|.+.+.|||+++++ +|++|++ +.++.|+ +|.+|+.+.+. +.|.+|+++|+||.||||+|..
T Consensus 36 ~iA~~i~e~L~~~~~~~v~~~eir~-~~~~l~~k~~~e~a~-----rY~lwR~ir~~-~~p~IILIGGasGVGkStIA~E 108 (299)
T COG2074 36 SIAIEIQEELKKEGIRLVTKDEIRE-VYQKLLEKGDPEVAK-----RYLLWRRIRKM-KRPLIILIGGASGVGKSTIAGE 108 (299)
T ss_pred HHHHHHHHHHHhCCCeEeeHHHHHH-HHHHHHHhcCHHHHH-----HHHHHHHHhcc-CCCeEEEecCCCCCChhHHHHH
Confidence 4444455666788999999999999 9999999 8888887 89999999986 6799999999999999999999
Q ss_pred HHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCC----------------Chhh-h-HHHHHHHHH-HHHHHHHHH
Q 013289 162 IMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----------------DDML-Q-TAELVHQSS-TDAASSLLV 222 (446)
Q Consensus 162 La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~----------------~d~~-~-~ae~v~~ea-~~~a~~li~ 222 (446)
++.++|+ ..+|++|.+|+ ++|+.+++...| .+.. - +.-..|.++ ......+++
T Consensus 109 lA~rLgI------~~visTD~IRE--vlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~V~~GI~~VI~ 180 (299)
T COG2074 109 LARRLGI------RSVISTDSIRE--VLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASAVMVGIEAVIE 180 (299)
T ss_pred HHHHcCC------ceeecchHHHH--HHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHHhHHHHHHHHHHHH
Confidence 9999975 57899999975 455554432111 0000 0 111113332 466788999
Q ss_pred HHHhCCCcEEEeCcCCCH
Q 013289 223 TALNEGRDVIMDGTLSWV 240 (446)
Q Consensus 223 ~aL~~G~sVViD~T~s~~ 240 (446)
+|+.+|.|+|+||++.=|
T Consensus 181 RAi~eG~~lIIEGvHlVP 198 (299)
T COG2074 181 RAIEEGEDLIIEGVHLVP 198 (299)
T ss_pred HHHhcCcceEEEeeeecc
Confidence 999999999999998755
No 6
>PRK06762 hypothetical protein; Provisional
Probab=99.53 E-value=8.6e-14 Score=126.37 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC-CCCChhhhHHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~-g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
||.+|+|+|+|||||||+|+.|++.++ .++++++.|.++ +.+... +.++. . .......
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~-----~~~~~i~~D~~r------~~l~~~~~~~~~--~--------~~~~~~~ 59 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLG-----RGTLLVSQDVVR------RDMLRVKDGPGN--L--------SIDLIEQ 59 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEecHHHHH------HHhccccCCCCC--c--------CHHHHHH
Confidence 689999999999999999999999873 368899988874 334321 11110 0 0122333
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.+..++..|.+||+|+++....+++.+..++ ...
T Consensus 60 ~~~~~~~~g~~vild~~~~~~~~~~~~~~l~----------------------------------------------~~~ 93 (166)
T PRK06762 60 LVRYGLGHCEFVILEGILNSDRYGPMLKELI----------------------------------------------HLF 93 (166)
T ss_pred HHHHHHhCCCEEEEchhhccHhHHHHHHHHH----------------------------------------------Hhc
Confidence 5556788999999999987765554332221 233
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHH
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSH 339 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~ 339 (446)
++.+.++++++|++++.+|...|.. .|.++.+.+.+.+
T Consensus 94 ~~~~~~v~Ldap~e~~~~R~~~R~~--~~~~~~~~l~~~~ 131 (166)
T PRK06762 94 RGNAYTYYFDLSFEETLRRHSTRPK--SHEFGEDDMRRWW 131 (166)
T ss_pred CCCeEEEEEeCCHHHHHHHHhcccc--cccCCHHHHHHHH
Confidence 4567789999999999999999974 4666655544443
No 7
>COG4639 Predicted kinase [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=119.87 Aligned_cols=132 Identities=20% Similarity=0.200 Sum_probs=99.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~l 220 (446)
++.|+++.|+|||||||+++.... +..+|+.|+|+. .+... . ..+.+......+.+.+..+
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~---------~~~~lsld~~r~------~lg~~--~--~~e~sqk~~~~~~~~l~~~ 61 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFL---------QNYVLSLDDLRL------LLGVS--A--SKENSQKNDELVWDILYKQ 61 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCC---------CcceecHHHHHH------Hhhhc--h--hhhhccccHHHHHHHHHHH
Confidence 468999999999999999998543 356899998842 22111 0 0111111123355677778
Q ss_pred HHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCC
Q 013289 221 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 300 (446)
Q Consensus 221 i~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~g 300 (446)
++..|..|+..|+|+|+.+++.+++++.+|++ -|
T Consensus 62 l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~----------------------------------------------y~ 95 (168)
T COG4639 62 LEQRLRRGKFTIIDATNLRREDRRKLIDLAKA----------------------------------------------YG 95 (168)
T ss_pred HHHHHHcCCeEEEEcccCCHHHHHHHHHHHHH----------------------------------------------hC
Confidence 99999999999999999999999999888743 45
Q ss_pred cEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHH
Q 013289 301 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKR 341 (446)
Q Consensus 301 Y~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~r 341 (446)
|.+.++++++|++++.+|...|. |.||++.+.+.+..
T Consensus 96 ~~~~~ivfdtp~~~c~aRNk~~~----Rqv~~~VI~r~~r~ 132 (168)
T COG4639 96 YKIYAIVFDTPLELCLARNKLRE----RQVPEEVIPRMLRE 132 (168)
T ss_pred CeEEEEEEeCCHHHHHHHhhccc----hhCCHHHHHHHHHH
Confidence 66778999999999999988555 99999999887765
No 8
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.42 E-value=1.7e-12 Score=139.48 Aligned_cols=107 Identities=17% Similarity=0.075 Sum_probs=87.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
.+|.||+|+|+|||||||+|+.++... ++++||.|.+.. + ..+..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~-------g~~~vn~D~lg~------------------------~----~~~~~ 411 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPA-------GYKHVNADTLGS------------------------T----QNCLT 411 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHc-------CCeEECcHHHHH------------------------H----HHHHH
Confidence 579999999999999999999999875 579999987621 0 01223
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.+.++|.+|++||+|+|+..+..|+.++++| ++.
T Consensus 412 ~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lA----------------------------------------------k~~ 445 (526)
T TIGR01663 412 ACERALDQGKRCAIDNTNPDAASRAKFLQCA----------------------------------------------RAA 445 (526)
T ss_pred HHHHHHhCCCcEEEECCCCCHHHHHHHHHHH----------------------------------------------HHc
Confidence 5678999999999999999999998887765 345
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhhhcC
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAIMMK 327 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~~gG 327 (446)
|+.+.++++++|.+++..|...|....+
T Consensus 446 gv~v~~i~~~~p~e~~~~Rn~~R~~~~~ 473 (526)
T TIGR01663 446 GIPCRCFLFNAPLAQAKHNIAFRELSDS 473 (526)
T ss_pred CCeEEEEEeCCCHHHHHHHHHhhccCCc
Confidence 6778899999999999999999986433
No 9
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.40 E-value=2.6e-11 Score=122.14 Aligned_cols=164 Identities=20% Similarity=0.324 Sum_probs=114.0
Q ss_pred hhHHHhhhcccchh-h--hchhhhHHHHhhhhchhhhhhhhhhHHHHHHHHH-HHHHHHhcCCCccccccccccccCCCC
Q 013289 67 SLMISQVLSVESEK-K--TKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSP 142 (446)
Q Consensus 67 ~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~~l~e-~~~~~~~~~~~~~~~~~~~~~~~~~~P 142 (446)
-.+++|.|+.-.=+ . -++-.-|.+.-|+++.+++++++..++|+++|.+ ..+.++. +|.+|+.+... +.|
T Consensus 19 rgiL~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~~-----~y~~~~~i~~~-~~p 92 (301)
T PRK04220 19 KGILARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVAE-----KYLLWRRIRKS-KEP 92 (301)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHHH-----HHHHHHHHhcC-CCC
Confidence 34566666533211 1 1344445556677899999999999999999999 4466664 69999999886 579
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC-----------------CCCC-hhhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-----------------GHHD-DMLQ 204 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~-----------------g~~~-d~~~ 204 (446)
.+|+++|++||||||+|..|+..++ ...+|++|.+++ .+++.++.. ..|. +...
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~------~~~vi~~D~~re--~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~ 164 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLG------IRSVIGTDSIRE--VMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPV 164 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC------CCEEEechHHHH--HHHHhcchhhccchhhhhhhhhhcccCCCCCchhh
Confidence 9999999999999999999999985 236899999973 122211110 0011 1101
Q ss_pred HHHH-HH-HHHHHHHHHHHHHHHhCCCcEEEeCcCCCHHHHH
Q 013289 205 TAEL-VH-QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVE 244 (446)
Q Consensus 205 ~ae~-v~-~ea~~~a~~li~~aL~~G~sVViD~T~s~~~~re 244 (446)
...+ .+ +.....+..++..++.+|.++|+||.+..|.+.+
T Consensus 165 l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~ 206 (301)
T PRK04220 165 IYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIK 206 (301)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHH
Confidence 1111 11 1224567889999999999999999999987654
No 10
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.37 E-value=1.5e-11 Score=111.40 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=83.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA 224 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~a 224 (446)
|+|.|+|||||||+++.|+..+ +..+||.|.+......++.+.+.+.. ... .......+...+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-------~~~~v~~D~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~ 66 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-------GAKFIEGDDLHPAANIEKMSAGIPLN--DDD-----RWPWLQNLNDASTAA 66 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-------CCeEEeCccccChHHHHHHHcCCCCC--hhh-----HHHHHHHHHHHHHHH
Confidence 5789999999999999999987 37899999985432233333332111 110 111122233455567
Q ss_pred HhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEEE
Q 013289 225 LNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIE 304 (446)
Q Consensus 225 L~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I~ 304 (446)
+..|.++|+++|+..+.+++.+ +..++.+.
T Consensus 67 l~~~~~~Vi~~t~~~~~~r~~~--------------------------------------------------~~~~~~~~ 96 (163)
T TIGR01313 67 AAKNKVGIITCSALKRHYRDIL--------------------------------------------------REAEPNLH 96 (163)
T ss_pred HhcCCCEEEEecccHHHHHHHH--------------------------------------------------HhcCCCEE
Confidence 7788888999887765554322 11234567
Q ss_pred EEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHH
Q 013289 305 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHK 340 (446)
Q Consensus 305 lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~ 340 (446)
++++++|++++.+|...|. |+.++.+.+...+.
T Consensus 97 ~i~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~ 129 (163)
T TIGR01313 97 FIYLSGDKDVILERMKARK---GHFMKADMLESQFA 129 (163)
T ss_pred EEEEeCCHHHHHHHHHhcc---CCCCCHHHHHHHHH
Confidence 7899999999999999995 55556544444443
No 11
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.36 E-value=2.5e-11 Score=108.29 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 223 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~ 223 (446)
|++|+|+|||||||+++.|++.+ ++.+||.|.++......+...+ .+........+ . ..........
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-------~~~~i~~D~~~~~~~~~~~~~~--~~~~~~~~~~~--~--~~~~~~~~~~ 67 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-------GAPFIDGDDLHPPANIAKMAAG--IPLNDEDRWPW--L--QALTDALLAK 67 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-------CCEEEeCcccccHHHHHHHHcC--CCCCccchhhH--H--HHHHHHHHHH
Confidence 58999999999999999999986 4789999999653111112222 11111100111 0 1111112222
Q ss_pred HHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEE
Q 013289 224 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 303 (446)
Q Consensus 224 aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I 303 (446)
.+..|.++|+|+++....+++.+.++ + .++.+
T Consensus 68 l~~~~~~vVid~~~~~~~~r~~~~~~----------------------------------------------~--~~~~~ 99 (150)
T cd02021 68 LASAGEGVVVACSALKRIYRDILRGG----------------------------------------------A--ANPRV 99 (150)
T ss_pred HHhCCCCEEEEeccccHHHHHHHHhc----------------------------------------------C--CCCCE
Confidence 23589999999998776555433211 1 34567
Q ss_pred EEEEEeCCHHHHHHHHHHhhhhcCcccch
Q 013289 304 ELVGVVCDAYLAVVRGIRRAIMMKRAVRV 332 (446)
Q Consensus 304 ~lv~V~~d~elav~Rv~~R~~~gGR~Vpv 332 (446)
.++++.||+++..+|...|. ++..+.
T Consensus 100 ~~v~l~~~~~~~~~R~~~R~---~~~~~~ 125 (150)
T cd02021 100 RFVHLDGPREVLAERLAARK---GHFMPA 125 (150)
T ss_pred EEEEEECCHHHHHHHHHhcc---cCCCCH
Confidence 78999999999999999995 344443
No 12
>COG0645 Predicted kinase [General function prediction only]
Probab=99.35 E-value=1.2e-11 Score=114.78 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=93.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC---CCCChhhhHHHHHHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK---GHHDDMLQTAELVHQSSTDAAS 218 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~---g~~~d~~~~ae~v~~ea~~~a~ 218 (446)
+.+++++|.||+||||+|+.+.+.+ ++++|.+|++ ++.|.+. ...+...|+.+. ....+..+.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~l-------gA~~lrsD~i------rk~L~g~p~~~r~~~g~ys~~~-~~~vy~~l~ 66 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELL-------GAIRLRSDVI------RKRLFGVPEETRGPAGLYSPAA-TAAVYDELL 66 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhc-------CceEEehHHH------HHHhcCCcccccCCCCCCcHHH-HHHHHHHHH
Confidence 4689999999999999999999997 4899998887 5667762 001122233332 334456666
Q ss_pred HHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 219 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
.....++..|.+||+|+||.++..|+.....|++
T Consensus 67 ~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~---------------------------------------------- 100 (170)
T COG0645 67 GRAELLLSSGHSVVLDATFDRPQERALARALARD---------------------------------------------- 100 (170)
T ss_pred HHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhc----------------------------------------------
Confidence 6888899999999999999999888877665533
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhhh
Q 013289 299 KPYRIELVGVVCDAYLAVVRGIRRAI 324 (446)
Q Consensus 299 ~gY~I~lv~V~~d~elav~Rv~~R~~ 324 (446)
.|..+.++.+.+++++...|...|.-
T Consensus 101 ~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 101 VGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred cCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 33456778888999999999999874
No 13
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.32 E-value=1.9e-11 Score=112.71 Aligned_cols=128 Identities=17% Similarity=0.138 Sum_probs=81.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHH-h-cCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL-S-SKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L-~-~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..+|+|+|+|||||||+++.|++.++ ..+++++.|.+....+....- . .....++..+..+..+...+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 76 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA-----EPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYE 76 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC-----CCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHH
Confidence 46899999999999999999998863 235778889874321100000 0 0000000011112223445666667
Q ss_pred HHHHHHhCCCcEEEeCcCC-CHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 220 LLVTALNEGRDVIMDGTLS-WVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s-~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
.+..++++|.+||+|.++. .+.+++.+.. .
T Consensus 77 ~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~-------------------------------------------------~ 107 (175)
T cd00227 77 AVAAMARAGANVIADDVFLGRAALQDCWRS-------------------------------------------------F 107 (175)
T ss_pred HHHHHHhCCCcEEEeeeccCCHHHHHHHHH-------------------------------------------------h
Confidence 7888999999999999987 4433332110 1
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhh
Q 013289 299 KPYRIELVGVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 299 ~gY~I~lv~V~~d~elav~Rv~~R~ 323 (446)
.+..+.++++.||.+++.+|...|.
T Consensus 108 ~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 108 VGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred cCCCEEEEEEECCHHHHHHHHHhcC
Confidence 1234678999999999999999985
No 14
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.30 E-value=3.1e-11 Score=117.37 Aligned_cols=132 Identities=20% Similarity=0.255 Sum_probs=86.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 223 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~ 223 (446)
||+|+|+|||||||+|+.|++.+.. .+.++++++.|.+++. +.. +. . .... .........+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~--~~~~v~~i~~D~lr~~------~~~--~~-~--~~e~----~~~~~~~~~i~~ 63 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE--KNIDVIILGTDLIRES------FPV--WK-E--KYEE----FIRDSTLYLIKT 63 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--cCCceEEEccHHHHHH------hHH--hh-H--HhHH----HHHHHHHHHHHH
Confidence 6899999999999999999987631 2235788888887532 211 00 0 0011 112233447788
Q ss_pred HHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEE
Q 013289 224 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 303 (446)
Q Consensus 224 aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I 303 (446)
+++.|..||+|+++....++..+...+ +..++..
T Consensus 64 ~l~~~~~VI~D~~~~~~~~r~~l~~~a----------------------------------------------k~~~~~~ 97 (249)
T TIGR03574 64 ALKNKYSVIVDDTNYYNSMRRDLINIA----------------------------------------------KEYNKNY 97 (249)
T ss_pred HHhCCCeEEEeccchHHHHHHHHHHHH----------------------------------------------HhCCCCE
Confidence 999999999999887666665554433 2233445
Q ss_pred EEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHH
Q 013289 304 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRF 342 (446)
Q Consensus 304 ~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf 342 (446)
.++++++|.++++.|...|. +.+|.+.+...+.+|
T Consensus 98 ~~I~l~~p~e~~~~Rn~~R~----~~~~~~~i~~l~~r~ 132 (249)
T TIGR03574 98 IIIYLKAPLDTLLRRNIERG----EKIPNEVIKDMYEKF 132 (249)
T ss_pred EEEEecCCHHHHHHHHHhCC----CCCCHHHHHHHHHhh
Confidence 67889999999999988774 455655554444444
No 15
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.27 E-value=3e-10 Score=120.18 Aligned_cols=183 Identities=16% Similarity=0.164 Sum_probs=118.8
Q ss_pred hhhhchhhhhhhhhhHHHHHHHHHHHH-HHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccC
Q 013289 92 TRKQRFEKVTKDLKMKRVFSTLVEEMK-AIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG 170 (446)
Q Consensus 92 ~~~~~~~~v~~~~~~~r~~~~l~e~~~-~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~ 170 (446)
.++++.+.++++..+..|...|.+.+. .++. .+.+|.++... +.|.+|+|+|+||+||||++..|+..++|
T Consensus 210 L~~kg~~~~~ra~VR~~V~~~L~~~l~~~~a~-----~y~la~~i~~~-k~p~vil~~G~~G~GKSt~a~~LA~~lg~-- 281 (475)
T PRK12337 210 LRRSGDRVVRRDQLRRKVEALLLEEAGEEVAR-----RYRLLRSIRRP-PRPLHVLIGGVSGVGKSVLASALAYRLGI-- 281 (475)
T ss_pred HHhcccccccHHHHHHHHHHHHHhhhhhhHHH-----HHHHHHHhhcc-CCCeEEEEECCCCCCHHHHHHHHHHHcCC--
Confidence 334566677788888888888888553 2232 46777777764 46999999999999999999999999853
Q ss_pred CCCCeEEEeCcccccchHHHHHHhcCCCC---------------C-----hhhhH----HHH-HHHH-HHHHHHHHHHHH
Q 013289 171 AATNAVVVEADAFKETDVIYRALSSKGHH---------------D-----DMLQT----AEL-VHQS-STDAASSLLVTA 224 (446)
Q Consensus 171 ~~~~~vvIdaD~ir~~d~irk~L~~~g~~---------------~-----d~~~~----ae~-v~~e-a~~~a~~li~~a 224 (446)
..+|++|.+++. ++..+.....| + +..+. ..+ .|-+ .....+.+++.+
T Consensus 282 ----~~ii~tD~iR~~--lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~ 355 (475)
T PRK12337 282 ----TRIVSTDAVREV--LRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERS 355 (475)
T ss_pred ----cEEeehhHHHHH--HHhhcchhhccchhhchhhHHhhccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899998641 22222221101 0 00000 001 0111 245578899999
Q ss_pred HhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEEE
Q 013289 225 LNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIE 304 (446)
Q Consensus 225 L~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I~ 304 (446)
+..|.|||+||++..+.+++. + ....+-.+.
T Consensus 356 l~eG~SvIIEGVHl~P~~i~~----~---------------------------------------------~~~~~~~i~ 386 (475)
T PRK12337 356 AQEGTSLVLEGVHLVPGYLRH----P---------------------------------------------YQAGALVVP 386 (475)
T ss_pred HHcCCeEEEECCCCCHHHHHH----H---------------------------------------------HhcCCceEE
Confidence 999999999999999876541 1 011222233
Q ss_pred EEEEeCCHHHHHHHHHHhhhhcCcccchhhhhh
Q 013289 305 LVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLK 337 (446)
Q Consensus 305 lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~ 337 (446)
++.+..|.+.-..|...|...++..-|.+..++
T Consensus 387 flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~ 419 (475)
T PRK12337 387 MLVTLPDEALHRRRFELRDRETGASRPRERYLR 419 (475)
T ss_pred EEEEECCHHHHHHHHHHHhhhccCCCchhHHHH
Confidence 344446899999999999987765555444333
No 16
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.24 E-value=5.1e-10 Score=102.87 Aligned_cols=142 Identities=15% Similarity=0.234 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHH-H--HHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQ-S--STDAASSL 220 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~-e--a~~~a~~l 220 (446)
+|+|.|+|||||||+++.|++.+ ++++|+.+++ +++.+... .+ ........... . ....+..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-------~~~~is~~d~-----lr~~~~~~-~~-~~~~~~~~~~~g~~~~~~~~~~l 66 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-------GFTHLSAGDL-----LRAEIKSG-SE-NGELIESMIKNGKIVPSEVTVKL 66 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-------CCeEEECChH-----HHHHHhcC-Ch-HHHHHHHHHHCCCcCCHHHHHHH
Confidence 58999999999999999999997 4799998554 23333321 00 00000111000 0 01222335
Q ss_pred HHHHHhC--CCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 221 LVTALNE--GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 221 i~~aL~~--G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
+..++.. +..+|+||...+......+...+. ..
T Consensus 67 l~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~---------------------------------------------~~ 101 (183)
T TIGR01359 67 LKNAIQADGSKKFLIDGFPRNEENLEAWEKLMD---------------------------------------------NK 101 (183)
T ss_pred HHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHh---------------------------------------------cC
Confidence 5555543 678999998877654443322110 00
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhhhhcCcccc-hhhhhhHHHHHHHh
Q 013289 299 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANA 345 (446)
Q Consensus 299 ~gY~I~lv~V~~d~elav~Rv~~R~~~gGR~Vp-v~~ql~r~~rf~~~ 345 (446)
.... .++++++|++++.+|...|....||.-. .+.+.+++..+.+.
T Consensus 102 ~~~d-~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~ 148 (183)
T TIGR01359 102 VNFK-FVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQ 148 (183)
T ss_pred CCCC-EEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHH
Confidence 1111 2688899999999999999865555433 45555555555444
No 17
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.23 E-value=4e-10 Score=107.16 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCC-------------CCChh--hhH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG-------------HHDDM--LQT 205 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g-------------~~~d~--~~~ 205 (446)
.|.+|+++|.|||||||+++.|+.+++ -..++..|.+++ .+++.... + ++++. .-.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~------~~~~~~~D~~r~--~~r~~~~~-~p~l~~s~~~a~~~~~~~~~~~~~ 72 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRA------IDIVLSGDYLRE--FLRPYVDD-EPVLAKSVYDAWEFYGSMTDENIV 72 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC------CeEEehhHHHHH--HHHHhcCC-CCCcccccHHHHHHcCCcchhHHH
Confidence 578999999999999999999999975 245788888754 23332221 1 00000 000
Q ss_pred HH-HHH-HHHHHHHHHHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhc
Q 013289 206 AE-LVH-QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEG 283 (446)
Q Consensus 206 ae-~v~-~ea~~~a~~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~ 283 (446)
.. ..| ...+.....++..++.+|.+||+|+++..+.+++..
T Consensus 73 ~~y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~------------------------------------- 115 (197)
T PRK12339 73 KGYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN------------------------------------- 115 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH-------------------------------------
Confidence 00 011 122455677889999999999999999988664311
Q ss_pred chhhHhhhhhhhhcCCCcEEEEEEEe-CCHHHHHHHHHHhhhhcCcccchhhhhh
Q 013289 284 EEDYQQKENRQVFSRKPYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRVNSQLK 337 (446)
Q Consensus 284 ~~~~~~~~~~~~~~~~gY~I~lv~V~-~d~elav~Rv~~R~~~gGR~Vpv~~ql~ 337 (446)
...+ +.++++. .++++...|...|...+++..|.+..++
T Consensus 116 -------------~~~~--v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~ 155 (197)
T PRK12339 116 -------------RTNN--IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAE 155 (197)
T ss_pred -------------HhcC--eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence 0011 2334443 5799999999999999999888765544
No 18
>PRK14527 adenylate kinase; Provisional
Probab=99.13 E-value=1.1e-09 Score=102.36 Aligned_cols=148 Identities=14% Similarity=0.098 Sum_probs=88.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHH---HHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQ---SSTDA 216 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~---ea~~~ 216 (446)
.+|.+|+|.|+|||||||+++.|++.+ ++.+++.|++- ++.+... .+ -.....+.... .....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~-------~~~~is~gd~~-----r~~~~~~-~~-~~~~~~~~~~~g~~~p~~~ 69 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL-------GLKKLSTGDIL-----RDHVARG-TE-LGQRAKPIMEAGDLVPDEL 69 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-------CCCCCCccHHH-----HHHHhcC-cH-HHHHHHHHHHcCCCCcHHH
Confidence 568999999999999999999999987 47889887662 3333221 00 00001111000 00122
Q ss_pred HHHHHHHHHhC--CCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhh
Q 013289 217 ASSLLVTALNE--GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 294 (446)
Q Consensus 217 a~~li~~aL~~--G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~ 294 (446)
...++...+.+ +..+|+||...+...++.+..++
T Consensus 70 ~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~-------------------------------------------- 105 (191)
T PRK14527 70 ILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLL-------------------------------------------- 105 (191)
T ss_pred HHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHH--------------------------------------------
Confidence 33455555554 45799998665543333222111
Q ss_pred hhcCCCcEE-EEEEEeCCHHHHHHHHHHhhhhcCcccc-hhhhhhHHHHHHHhHH
Q 013289 295 VFSRKPYRI-ELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAFR 347 (446)
Q Consensus 295 ~~~~~gY~I-~lv~V~~d~elav~Rv~~R~~~gGR~Vp-v~~ql~r~~rf~~~~~ 347 (446)
...|..+ .+++++||++++..|...|....||.-. .+.+.++...|.+...
T Consensus 106 --~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~ 158 (191)
T PRK14527 106 --EELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQ 158 (191)
T ss_pred --HHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhH
Confidence 1122223 3578899999999999999876666543 6666666666665543
No 19
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.10 E-value=9.1e-10 Score=99.63 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=75.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC-CCCChhhhHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAASSLLV 222 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~-g~~~d~~~~ae~v~~ea~~~a~~li~ 222 (446)
+++|+|+|||||||+++.|+..+.+ .+.++.+++.|.++ +.+... ++.... ..+..+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~--~g~~~~~i~~d~~r------~~l~~~~~~~~~~-------~~~~~~~~~~~a~ 65 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ--RGRPVYVLDGDNVR------HGLNKDLGFSRED-------REENIRRIAEVAK 65 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEEcCHHHH------HhhhhccCCCcch-------HHHHHHHHHHHHH
Confidence 4789999999999999999998631 12356788988874 333321 111110 1122233334556
Q ss_pred HHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcE
Q 013289 223 TALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYR 302 (446)
Q Consensus 223 ~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~ 302 (446)
..+++|.+||+|.++.++..+..+.+++ . ++.
T Consensus 66 ~l~~~G~~VIid~~~~~~~~R~~~~~l~----------------------------------------------~--~~~ 97 (149)
T cd02027 66 LLADAGLIVIAAFISPYREDREAARKII----------------------------------------------G--GGD 97 (149)
T ss_pred HHHhCCCEEEEccCCCCHHHHHHHHHhc----------------------------------------------C--CCC
Confidence 6778999999999998876665432221 1 456
Q ss_pred EEEEEEeCCHHHHHHHH
Q 013289 303 IELVGVVCDAYLAVVRG 319 (446)
Q Consensus 303 I~lv~V~~d~elav~Rv 319 (446)
+.++++.||.+++.+|.
T Consensus 98 ~~~i~l~~~~e~~~~R~ 114 (149)
T cd02027 98 FLEVFVDTPLEVCEQRD 114 (149)
T ss_pred EEEEEEeCCHHHHHHhC
Confidence 78899999999988875
No 20
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.08 E-value=2.1e-09 Score=99.55 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=62.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC-CCCChhhhHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAAS 218 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~-g~~~d~~~~ae~v~~ea~~~a~ 218 (446)
.+|.+++|+|++||||||+++.|...+. ..+.+.++++.|.++ +.+... ++. .+. .......+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~--~~~~~~~~l~~d~~r------~~l~~~~~~~------~~~-~~~~~~~~~ 80 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE--SKGYRVYVLDGDNVR------HGLNKDLGFS------EED-RKENIRRIG 80 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECChHHH------hhhccccCCC------HHH-HHHHHHHHH
Confidence 5689999999999999999999998763 222347889988874 334331 111 111 111223333
Q ss_pred HHHHHHHhCCCcEEEeCcCCCHHHHHHH
Q 013289 219 SLLVTALNEGRDVIMDGTLSWVPFVEQT 246 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~T~s~~~~re~l 246 (446)
.+....+.+|.+||+|+++..+.+++.+
T Consensus 81 ~~~~~~~~~G~~VI~d~~~~~~~~r~~~ 108 (184)
T TIGR00455 81 EVAKLFVRNGIIVITSFISPYRADRQMV 108 (184)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHH
Confidence 4666778999999999998887776554
No 21
>PLN02200 adenylate kinase family protein
Probab=99.04 E-value=1.2e-08 Score=99.39 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=36.8
Q ss_pred cccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 132 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 132 ~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+++.....+.|.+|+|.|+|||||||+++.|++.+ ++.+|+.+++
T Consensus 33 ~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~-------g~~his~gdl 77 (234)
T PLN02200 33 ERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF-------GFKHLSAGDL 77 (234)
T ss_pred cccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------CCeEEEccHH
Confidence 44444555678999999999999999999999987 4789998555
No 22
>PRK06696 uridine kinase; Validated
Probab=99.04 E-value=9.6e-10 Score=105.45 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYR 191 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk 191 (446)
..|.+|.|+|++||||||+|+.|++.++ ..+..+++++.|.|-.....++
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~--~~g~~v~~~~~Ddf~~~~~~r~ 69 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIK--KRGRPVIRASIDDFHNPRVIRY 69 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeccccccCCHHHHH
Confidence 4689999999999999999999999873 1122466778999965544433
No 23
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.03 E-value=4.5e-09 Score=96.83 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~l 220 (446)
+|.+|+|+|.|||||||+|+.|.+.+. ..+..+.++|.|.++. .|... .+ +..+- ..+..+.+..+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LDgD~lR~------~l~~d-l~----fs~~d-R~e~~rr~~~~ 66 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLDGDNLRH------GLNAD-LG----FSKED-REENIRRIAEV 66 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEEHHHHCT------TTTTT-------SSHHH-HHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEecCcchhh------ccCCC-CC----CCHHH-HHHHHHHHHHH
Confidence 489999999999999999999998874 4456799999999864 24432 11 11111 23334445567
Q ss_pred HHHHHhCCCcEEEeCcCCCHHHHHHH
Q 013289 221 LVTALNEGRDVIMDGTLSWVPFVEQT 246 (446)
Q Consensus 221 i~~aL~~G~sVViD~T~s~~~~re~l 246 (446)
.....++|..||+..+-..++.|+..
T Consensus 67 A~ll~~~G~ivIva~isp~~~~R~~~ 92 (156)
T PF01583_consen 67 AKLLADQGIIVIVAFISPYREDREWA 92 (156)
T ss_dssp HHHHHHTTSEEEEE----SHHHHHHH
T ss_pred HHHHHhCCCeEEEeeccCchHHHHHH
Confidence 77788899999999877766666544
No 24
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.01 E-value=3.4e-09 Score=99.25 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC--CCC--ChhhhHHHHHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GHH--DDMLQTAELVHQSSTDAAS 218 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~--g~~--~d~~~~ae~v~~ea~~~a~ 218 (446)
.+|++-|+|-|||||+++.|...+. ..+.++..|.|....+. ..... +.. ++.... .......+....
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~-----~p~~~l~~D~f~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP-----EPWLHLSVDTFVDMMPP--GRYRPGDGLEPAGDRPDG-GPLFRRLYAAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS-----S-EEEEEHHHHHHHS-G--GGGTSTTSEEEETTSEEE--HHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc-----CCeEEEecChHHhhcCc--ccccCCccccccccCCch-hHHHHHHHHHHH
Confidence 5899999999999999999999874 45799999998542111 11110 100 000000 112334455566
Q ss_pred HHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 219 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
.-+....+.|.+||+|..+..+.+.....+ . .-
T Consensus 74 ~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~------------------------------~-----------------~L 106 (174)
T PF07931_consen 74 AAIAAMARAGNNVIVDDVFLGPRWLQDCLR------------------------------R-----------------LL 106 (174)
T ss_dssp HHHHHHHHTT-EEEEEE--TTTHHHHHHHH------------------------------H-----------------HH
T ss_pred HHHHHHHhCCCCEEEecCccCcHHHHHHHH------------------------------H-----------------Hh
Confidence 677888899999999999887654221110 0 12
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhhh
Q 013289 299 KPYRIELVGVVCDAYLAVVRGIRRAI 324 (446)
Q Consensus 299 ~gY~I~lv~V~~d~elav~Rv~~R~~ 324 (446)
.||.+.+|+|.||+++..+|-+.|.-
T Consensus 107 ~~~~vl~VgV~Cpleil~~RE~~RgD 132 (174)
T PF07931_consen 107 AGLPVLFVGVRCPLEILERRERARGD 132 (174)
T ss_dssp TTS-EEEEEEE--HHHHHHHHHHHTS
T ss_pred CCCceEEEEEECCHHHHHHHHHhcCC
Confidence 46889999999999999999998874
No 25
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.00 E-value=1.2e-08 Score=93.44 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|+|.|+|||||||+++.|++.++ ..+++.+++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g-------~~~~~~g~~ 37 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG-------FTHLSTGDL 37 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-------CcEEeHHHH
Confidence 4788899999999999999999874 678888654
No 26
>PRK14532 adenylate kinase; Provisional
Probab=98.99 E-value=1.4e-08 Score=94.13 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|+|.|+|||||||+++.|++.+ ++.+|+.|++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~-------g~~~is~~d~ 34 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER-------GMVQLSTGDM 34 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-------CCeEEeCcHH
Confidence 7889999999999999999987 4799998655
No 27
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1e-08 Score=94.39 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=92.5
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCC-hhhhHHHHHHHHHHH
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD-DMLQTAELVHQSSTD 215 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~-d~~~~ae~v~~ea~~ 215 (446)
+.++.|.+|++.|++||||||+++.|.++++ +.++|+|++..-....| +.. |.|- |......+ + .
T Consensus 7 t~~~~k~~i~vmGvsGsGKSTigk~L~~~l~-------~~F~dgDd~Hp~~NveK-M~~-GipLnD~DR~pWL-~----~ 72 (191)
T KOG3354|consen 7 TMGPFKYVIVVMGVSGSGKSTIGKALSEELG-------LKFIDGDDLHPPANVEK-MTQ-GIPLNDDDRWPWL-K----K 72 (191)
T ss_pred ccCCCceeEEEEecCCCChhhHHHHHHHHhC-------CcccccccCCCHHHHHH-Hhc-CCCCCcccccHHH-H----H
Confidence 4445677999999999999999999999985 57999999964322233 322 3442 33332222 1 1
Q ss_pred HHHHHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhh
Q 013289 216 AASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 295 (446)
Q Consensus 216 ~a~~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~ 295 (446)
... .....+..|+-||+-+.-..+.||+.+.... +.++.
T Consensus 73 i~~-~~~~~l~~~q~vVlACSaLKk~YRdILr~sl----------------------------------------~~gk~ 111 (191)
T KOG3354|consen 73 IAV-ELRKALASGQGVVLACSALKKKYRDILRHSL----------------------------------------KDGKP 111 (191)
T ss_pred HHH-HHHHHhhcCCeEEEEhHHHHHHHHHHHHhhc----------------------------------------ccCCc
Confidence 111 2223444899999998888888887653211 11111
Q ss_pred hcCCCcEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhh
Q 013289 296 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNS 334 (446)
Q Consensus 296 ~~~~gY~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ 334 (446)
.+.....+.+++...+-|+-..|+..|. ||+.|.+-
T Consensus 112 ~~~~~~~l~fi~l~~s~evi~~Rl~~R~---gHFMp~~l 147 (191)
T KOG3354|consen 112 GKCPESQLHFILLSASFEVILKRLKKRK---GHFMPADL 147 (191)
T ss_pred cCCccceEEEeeeeccHHHHHHHHhhcc---cccCCHHH
Confidence 2344456777788889999999999998 59999443
No 28
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.97 E-value=2.9e-09 Score=101.82 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~l 220 (446)
++.+|.++|.+||||||+++.+.+ + |+.+||+|.+. +++...+.+ . .
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~-------G~~vidaD~v~------r~~~~~~~~---~----------------~ 47 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-L-------GFPVIDADDVA------REVVEPGGE---A----------------L 47 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-c-------CCeEEEccHHH------HHHHhccch---H----------------H
Confidence 367999999999999999999988 4 58999999983 334332111 0 1
Q ss_pred HHHHHhCCCcEE-EeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhh------
Q 013289 221 LVTALNEGRDVI-MDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR------ 293 (446)
Q Consensus 221 i~~aL~~G~sVV-iD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~------ 293 (446)
...+...|..++ -|+++.++..++.++..+... ..+|.+-+|+...... .....
T Consensus 48 ~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~-----------------~~Le~i~hPli~~~~~--~~~~~~~~~~~ 108 (201)
T COG0237 48 QEIAERFGLEILDEDGGLDRRKLREKVFNDPEAR-----------------LKLEKILHPLIRAEIK--VVIDGARSPYV 108 (201)
T ss_pred HHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHH-----------------HHHHHhhhHHHHHHHH--HHHHHhhCCce
Confidence 222344688887 478888887777766544332 2445555554333210 00000
Q ss_pred ----hhhcCC-Cc--EEEEEEEeCCHHHHHHHHHHhhh
Q 013289 294 ----QVFSRK-PY--RIELVGVVCDAYLAVVRGIRRAI 324 (446)
Q Consensus 294 ----~~~~~~-gY--~I~lv~V~~d~elav~Rv~~R~~ 324 (446)
...... +. ...+++|+||++++.+|+++|..
T Consensus 109 ~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~ 146 (201)
T COG0237 109 VLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDG 146 (201)
T ss_pred EEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCC
Confidence 011122 21 12678899999999999999984
No 29
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.94 E-value=1e-08 Score=94.26 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=52.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..|.+|++.|+|||||||+++.|+..+. .+..+.++++.|.++ +.+...++. ..... +.......
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~~~d~~r------~~~~~~~~~--~~~~~-----~~~~~~~~ 69 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYLDGDELR------EILGHYGYD--KQSRI-----EMALKRAK 69 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEecHHHH------hhcCCCCCC--HHHHH-----HHHHHHHH
Confidence 5689999999999999999999998863 223457889888774 223221211 11101 11111222
Q ss_pred HHHHHHhCCCcEEEeCcCC
Q 013289 220 LLVTALNEGRDVIMDGTLS 238 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s 238 (446)
+.......|..||.|++..
T Consensus 70 l~~~l~~~g~~VI~~~~~~ 88 (176)
T PRK05541 70 LAKFLADQGMIVIVTTISM 88 (176)
T ss_pred HHHHHHhCCCEEEEEeCCc
Confidence 3333457899999998764
No 30
>PRK14531 adenylate kinase; Provisional
Probab=98.94 E-value=3.5e-08 Score=91.86 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.-|++.|+|||||||+++.|++.+ ++.+|+.+++
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~-------g~~~is~gd~ 36 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAH-------GLRHLSTGDL 36 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-------CCCeEecccH
Confidence 3468999999999999999999997 4789998554
No 31
>PRK12338 hypothetical protein; Provisional
Probab=98.94 E-value=3.7e-08 Score=100.26 Aligned_cols=132 Identities=20% Similarity=0.299 Sum_probs=84.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCC--hhhhHH-----------
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD--DMLQTA----------- 206 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~--d~~~~a----------- 206 (446)
+.|.+|+++|+|||||||+|+.|+.+++| ..+++.|.+++ .++..+.+.-.|. ...+.+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~------~~~~~tD~~r~--~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~ 73 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNI------KHLIETDFIRE--VVRGIIGKEYAPALHKSSYNAYTALRDKENFK 73 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCC------eEEccChHHHH--HHcCCCCcccCchhhcccHHHHhhcCCccccc
Confidence 46899999999999999999999999853 23457887753 1221111100010 000000
Q ss_pred ---HH------H-HHHHHHHHHHHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhh
Q 013289 207 ---EL------V-HQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENY 276 (446)
Q Consensus 207 ---e~------v-~~ea~~~a~~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~y 276 (446)
+. . .+........++..++..|.++|+||++..|.++... .
T Consensus 74 ~~~~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~--~--------------------------- 124 (319)
T PRK12338 74 NNEELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIE--Q--------------------------- 124 (319)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhh--h---------------------------
Confidence 00 0 1122455667888899999999999999888665421 0
Q ss_pred hhhhhhcchhhHhhhhhhhhcCCCcEEEEEEEeCCHHHHHHHHHHhhhhcCc
Q 013289 277 WEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKR 328 (446)
Q Consensus 277 w~~v~~~~~~~~~~~~~~~~~~~gY~I~lv~V~~d~elav~Rv~~R~~~gGR 328 (446)
......|.++++..+.+...+|...|+..++|
T Consensus 125 --------------------~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r 156 (319)
T PRK12338 125 --------------------FEENASIHFFILSADEEVHKERFVKRAMEIKR 156 (319)
T ss_pred --------------------hcccCceEEEEEECCHHHHHHHHHHhhhccCC
Confidence 00112355566678999999999999987766
No 32
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.94 E-value=1.3e-09 Score=105.17 Aligned_cols=146 Identities=22% Similarity=0.281 Sum_probs=86.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHH--HHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS--TDAA 217 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea--~~~a 217 (446)
.++.+|.++|++||||||+++.|...++ ....++|.-|.+ |+..... +.+..-...+.|.++ .+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~----~~~~~~I~~D~Y------Yk~~~~~--~~~~~~~~n~d~p~A~D~dLl 73 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG----VEKVVVISLDDY------YKDQSHL--PFEERNKINYDHPEAFDLDLL 73 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC----cCcceEeecccc------ccchhhc--CHhhcCCcCccChhhhcHHHH
Confidence 4469999999999999999999999985 236789999988 3322211 100011112234445 3556
Q ss_pred HHHHHHHHhCCCcEEE---eC-cCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhh
Q 013289 218 SSLLVTALNEGRDVIM---DG-TLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR 293 (446)
Q Consensus 218 ~~li~~aL~~G~sVVi---D~-T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~ 293 (446)
.+.+. .|.+|+.|.+ |- ++.+. . .. ..+.|.=. -++|+++-..++.
T Consensus 74 ~~~L~-~L~~g~~v~~P~yd~~~~~r~-~--~~-----------i~~~p~~V-----VIvEGi~~l~d~~---------- 123 (218)
T COG0572 74 IEHLK-DLKQGKPVDLPVYDYKTHTRE-P--ET-----------IKVEPNDV-----VIVEGILLLYDER---------- 123 (218)
T ss_pred HHHHH-HHHcCCcccccccchhccccc-C--Cc-----------cccCCCcE-----EEEecccccccHH----------
Confidence 66666 4556666532 31 11111 0 00 11223222 2667777554431
Q ss_pred hhhcCCCcEEEEEEEeCCHHHHHHHHHHhhh-hcCcccc
Q 013289 294 QVFSRKPYRIELVGVVCDAYLAVVRGIRRAI-MMKRAVR 331 (446)
Q Consensus 294 ~~~~~~gY~I~lv~V~~d~elav~Rv~~R~~-~gGR~Vp 331 (446)
-+.-+.+. ++|++|.++++.|.+.|+. +.||.++
T Consensus 124 ---lr~~~d~k-Ifvdtd~D~RliRri~RD~~~rg~~~e 158 (218)
T COG0572 124 ---LRDLMDLK-IFVDTDADVRLIRRIKRDVQERGRDLE 158 (218)
T ss_pred ---HHhhcCEE-EEEeCCccHHHHHHHHHHHHHhCCCHH
Confidence 12223333 8899999999999999987 4788766
No 33
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.93 E-value=8.5e-09 Score=97.22 Aligned_cols=34 Identities=38% Similarity=0.582 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+|+|+|++||||||+++.|.+ + ++.+||+|.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~-------g~~~i~~D~~ 35 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L-------GAPVIDADAI 35 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c-------CCEEEEecHH
Confidence 57899999999999999999987 5 4789999988
No 34
>PRK01184 hypothetical protein; Provisional
Probab=98.93 E-value=5.3e-08 Score=89.97 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|+|+|+|||||||+++ +++++ ++.++++|++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~-------g~~~i~~~d~ 34 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM-------GIPVVVMGDV 34 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc-------CCcEEEhhHH
Confidence 489999999999999987 66665 4788997543
No 35
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.92 E-value=1.4e-08 Score=101.23 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=81.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 223 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~ 223 (446)
||+|+|.|||||||+++.|.+.+. +.+....+|+.|.+. +....+. +. .....+.....+.+++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~--~~~~~v~~i~~~~~~--------~~~~~y~-~~-----~~Ek~~R~~l~s~v~r 66 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLE--EKGKEVVIISDDSLG--------IDRNDYA-DS-----KKEKEARGSLKSAVER 66 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHH--HTT--EEEE-THHHH---------TTSSS---G-----GGHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHH--hcCCEEEEEcccccc--------cchhhhh-ch-----hhhHHHHHHHHHHHHH
Confidence 789999999999999999988752 233467788866552 1111111 11 1122334456668888
Q ss_pred HHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEE
Q 013289 224 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 303 (446)
Q Consensus 224 aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I 303 (446)
++....-||+|+++--+.+|-++..+|++ .+...
T Consensus 67 ~ls~~~iVI~Dd~nYiKg~RYelyclAr~----------------------------------------------~~~~~ 100 (270)
T PF08433_consen 67 ALSKDTIVILDDNNYIKGMRYELYCLARA----------------------------------------------YGTTF 100 (270)
T ss_dssp HHTT-SEEEE-S---SHHHHHHHHHHHHH----------------------------------------------TT-EE
T ss_pred hhccCeEEEEeCCchHHHHHHHHHHHHHH----------------------------------------------cCCCE
Confidence 99999889999999888888877666543 22334
Q ss_pred EEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHh
Q 013289 304 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANA 345 (446)
Q Consensus 304 ~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~ 345 (446)
-+++|.|+.+.|+.|-..|... ..++.+.+.+...||-..
T Consensus 101 c~i~~~~~~e~~~~~N~~R~~~--~~~~~e~i~~m~~RfE~P 140 (270)
T PF08433_consen 101 CVIYCDCPLETCLQRNSKRPEP--ERYPEETIDDMIQRFEEP 140 (270)
T ss_dssp EEEEEE--HHHHHHHHHHTT-S----S-HHHHHHHHHH---T
T ss_pred EEEEECCCHHHHHHhhhccCCC--CCCCHHHHHHHHHHhcCC
Confidence 5689999999999999888742 348888887777776643
No 36
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.89 E-value=1.4e-08 Score=97.50 Aligned_cols=139 Identities=20% Similarity=0.210 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHH-HHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASSLL 221 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea-~~~a~~li 221 (446)
.||+++|+|||||||+|+.|++.+. ......+++..|..+.. +... .......++.++ ..-+..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~--~~i~~vi~l~kdy~~~i------~~DE-----slpi~ke~yres~~ks~~rll 68 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR--QEIWRVIHLEKDYLRGI------LWDE-----SLPILKEVYRESFLKSVERLL 68 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH--Hhhhhccccchhhhhhe------eccc-----ccchHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999988763 22234566666544211 1110 001111223333 23334477
Q ss_pred HHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCc
Q 013289 222 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY 301 (446)
Q Consensus 222 ~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY 301 (446)
..|++ ..-||+|.|.--..+|.++.-.|.. ...+|
T Consensus 69 dSalk-n~~VIvDdtNYyksmRrqL~ceak~--------------------------------------------~~tt~ 103 (261)
T COG4088 69 DSALK-NYLVIVDDTNYYKSMRRQLACEAKE--------------------------------------------RKTTW 103 (261)
T ss_pred HHHhc-ceEEEEecccHHHHHHHHHHHHHHh--------------------------------------------cCCce
Confidence 77776 6779999999888888887554422 12333
Q ss_pred EEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHh
Q 013289 302 RIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANA 345 (446)
Q Consensus 302 ~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~ 345 (446)
. ++++-||++++.+|- .+.|..+|.+...+.|.||-+.
T Consensus 104 c--iIyl~~plDtc~rrN----~ergepip~Evl~qly~RfEeP 141 (261)
T COG4088 104 C--IIYLRTPLDTCLRRN----RERGEPIPEEVLRQLYDRFEEP 141 (261)
T ss_pred E--EEEEccCHHHHHHhh----ccCCCCCCHHHHHHHHHhhcCC
Confidence 3 478889999987665 4567899999999988888754
No 37
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.89 E-value=2.9e-08 Score=91.16 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=54.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..+.+|+|+|+|||||||+++.|+..+. ..+.++.+||.|.++ +.+... .+..... .....+.+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~--~~g~~v~~id~D~~~------~~~~~~-~~~~~~~-----r~~~~~~~~~ 67 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR--EAGYPVEVLDGDAVR------TNLSKG-LGFSKED-----RDTNIRRIGF 67 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEcCccHH------HHHhcC-CCCChhh-----HHHHHHHHHH
Confidence 3578999999999999999999998763 122347889999874 333321 1100100 0111111122
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHH
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFV 243 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~r 243 (446)
+.......|..||++++......+
T Consensus 68 ~a~~~~~~g~~vi~~~~~~~~~~~ 91 (175)
T PRK00889 68 VANLLTRHGVIVLVSAISPYRETR 91 (175)
T ss_pred HHHHHHhCCCEEEEecCCCCHHHH
Confidence 333445679999999886544333
No 38
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.88 E-value=7.4e-08 Score=88.92 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|+|.|+|||||||+++.|++.+ ++.+|+.|++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-------~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-------GLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-------CCeEEECcHH
Confidence 7899999999999999999987 4789999876
No 39
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.87 E-value=6.5e-08 Score=90.20 Aligned_cols=123 Identities=12% Similarity=0.058 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 221 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li 221 (446)
+.++++.|+|||||||+++.++..++ ..+|+.|.+......++.....++.... .. . + ...+...+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~-------~~~i~gd~~~~~~~~r~~~~g~~~~~~~-~~-~--~---~~~~~~~~ 68 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS-------AKFIDGDDLHPAKNIDKMSQGIPLTDED-RL-P--W---LERLNDAS 68 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC-------CEEECCcccCCHhHHHHHhcCCCCCccc-ch-H--H---HHHHHHHH
Confidence 46899999999999999999998863 5799999885432233333222111110 00 0 1 11111111
Q ss_pred HHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCc
Q 013289 222 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY 301 (446)
Q Consensus 222 ~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY 301 (446)
...+..+.+.++-+++..+.+++.+ +..+.
T Consensus 69 ~~~~~~~~~g~iv~s~~~~~~R~~~--------------------------------------------------r~~~~ 98 (176)
T PRK09825 69 YSLYKKNETGFIVCSSLKKQYRDIL--------------------------------------------------RKSSP 98 (176)
T ss_pred HHHHhcCCCEEEEEEecCHHHHHHH--------------------------------------------------HhhCC
Confidence 2223333333333777776665532 11223
Q ss_pred EEEEEEEeCCHHHHHHHHHHhhhhcCcccc
Q 013289 302 RIELVGVVCDAYLAVVRGIRRAIMMKRAVR 331 (446)
Q Consensus 302 ~I~lv~V~~d~elav~Rv~~R~~~gGR~Vp 331 (446)
.+.+++++||+++..+|+..|. ||.++
T Consensus 99 ~~~~v~l~a~~~~l~~Rl~~R~---~~~~~ 125 (176)
T PRK09825 99 NVHFLWLDGDYETILARMQRRA---GHFMP 125 (176)
T ss_pred CEEEEEEeCCHHHHHHHHhccc---CCCCC
Confidence 4678999999999999999996 46654
No 40
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.87 E-value=3.4e-08 Score=86.69 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=75.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 223 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~ 223 (446)
+|+|+|+|||||||+++.|++.+ +..+++.|.+... ........ .. . .......+...+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-------~~~~~~~~~i~~e--~~~~~~~~-~~-~--------~~~i~~~l~~~~~~ 61 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-------GLPYLDTGGIRTE--EVGKLASE-VA-A--------IPEVRKALDERQRE 61 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-------CCceeccccCCHH--HHHHHHHH-hc-c--------cHhHHHHHHHHHHH
Confidence 58999999999999999999987 4789999966321 11111110 00 0 01111122223333
Q ss_pred HHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEE
Q 013289 224 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 303 (446)
Q Consensus 224 aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I 303 (446)
+..+.++|+||.... |.+ .+...
T Consensus 62 -~~~~~~~Vidg~~~~------------------------~~~--------------------------------~~~~~ 84 (147)
T cd02020 62 -LAKKPGIVLEGRDIG------------------------TVV--------------------------------FPDAD 84 (147)
T ss_pred -HhhCCCEEEEeeeee------------------------eEE--------------------------------cCCCC
Confidence 444568999986532 110 00012
Q ss_pred EEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHH
Q 013289 304 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRF 342 (446)
Q Consensus 304 ~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf 342 (446)
.++++++|+++.+.|+..|....++.++.+....+.+..
T Consensus 85 ~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 85 LKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 358889999999999999996666778766655555444
No 41
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.85 E-value=3.9e-08 Score=92.63 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=59.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhc-CCCCChhhhHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS-KGHHDDMLQTAELVHQSSTDAAS 218 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~-~g~~~d~~~~ae~v~~ea~~~a~ 218 (446)
.+|.+++|+|+|||||||+++.|...+. ..+.+.++++.|.++. .+.. .++.... .......+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~--~~~~~~~~ld~d~~~~------~~~~~~~~~~~~-------~~~~~~~l~ 86 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH--ELGVSTYLLDGDNVRH------GLCSDLGFSDAD-------RKENIRRVG 86 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH--hCCCCEEEEcCEeHHh------hhhhcCCcCccc-------HHHHHHHHH
Confidence 5689999999999999999999998763 2234589999998852 2221 1111111 112222233
Q ss_pred HHHHHHHhCCCcEEEeCcCCCHHHHHHHHH
Q 013289 219 SLLVTALNEGRDVIMDGTLSWVPFVEQTIA 248 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~T~s~~~~re~lia 248 (446)
.+....+.+|..||.+.....+..++.+.+
T Consensus 87 ~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~ 116 (198)
T PRK03846 87 EVAKLMVDAGLVVLTAFISPHRAERQMVRE 116 (198)
T ss_pred HHHHHHhhCCCEEEEEeCCCCHHHHHHHHH
Confidence 356667788988886655445666665543
No 42
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.85 E-value=9.1e-08 Score=91.13 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-|+|.|+|||||||+++.|++.+ ++.+|+.+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-------~~~~is~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-------GIPHISTGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-------CCcEEECCcc
Confidence 38899999999999999999997 4789998665
No 43
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=3.7e-08 Score=90.04 Aligned_cols=119 Identities=17% Similarity=0.108 Sum_probs=82.7
Q ss_pred cCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCC-hhhhHHHHHHHHHHHHHHHHHHHHHhC
Q 013289 149 GGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD-DMLQTAELVHQSSTDAASSLLVTALNE 227 (446)
Q Consensus 149 G~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~-d~~~~ae~v~~ea~~~a~~li~~aL~~ 227 (446)
|.+||||||++..|+++++ +.+|+.|++.....+.|+-.+ .|- |......+ ......+......
T Consensus 2 GVsG~GKStvg~~lA~~lg-------~~fidGDdlHp~aNi~KM~~G--iPL~DdDR~pWL------~~l~~~~~~~~~~ 66 (161)
T COG3265 2 GVSGSGKSTVGSALAERLG-------AKFIDGDDLHPPANIEKMSAG--IPLNDDDRWPWL------EALGDAAASLAQK 66 (161)
T ss_pred CCCccCHHHHHHHHHHHcC-------CceecccccCCHHHHHHHhCC--CCCCcchhhHHH------HHHHHHHHHhhcC
Confidence 8999999999999999985 789999999766566555433 342 33332322 1122233344557
Q ss_pred CCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEEEEEE
Q 013289 228 GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVG 307 (446)
Q Consensus 228 G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I~lv~ 307 (446)
|.++|+-+.-..+.||+.+.. ..| .+.+++
T Consensus 67 ~~~~vi~CSALKr~YRD~LR~-------------------------------------------------~~~-~~~Fv~ 96 (161)
T COG3265 67 NKHVVIACSALKRSYRDLLRE-------------------------------------------------ANP-GLRFVY 96 (161)
T ss_pred CCceEEecHHHHHHHHHHHhc-------------------------------------------------cCC-CeEEEE
Confidence 777888887777777775421 122 177899
Q ss_pred EeCCHHHHHHHHHHhhhhcCcccchhhh
Q 013289 308 VVCDAYLAVVRGIRRAIMMKRAVRVNSQ 335 (446)
Q Consensus 308 V~~d~elav~Rv~~R~~~gGR~Vpv~~q 335 (446)
++-+.++..+|...|. ||+.|.+-.
T Consensus 97 L~g~~~~i~~Rm~~R~---gHFM~~~ll 121 (161)
T COG3265 97 LDGDFDLILERMKARK---GHFMPASLL 121 (161)
T ss_pred ecCCHHHHHHHHHhcc---cCCCCHHHH
Confidence 9999999999999997 799995443
No 44
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.83 E-value=1.6e-08 Score=96.92 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|..|.++|++||||||+++.|.+.+ ++.++|+|.+
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~l-------g~~vidaD~i 40 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKL-------NLNVVCADTI 40 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHc-------CCeEEeccHH
Confidence 458999999999999999999999876 3679999988
No 45
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.82 E-value=3.8e-08 Score=90.46 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=67.4
Q ss_pred EcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHH-HHh
Q 013289 148 GGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT-ALN 226 (446)
Q Consensus 148 aG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~-aL~ 226 (446)
.|+|||||||+++.|+..+ +.++|+.|.+.....+++.+.+ .+........+ ...+...... ...
T Consensus 1 ~G~sGsGKSTla~~la~~l-------~~~~~~~d~~~~~~~~~~~~~g--~~~~~~~~~~~-----~~~~~~~~~~~~~~ 66 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-------HAAFLDGDFLHPRRNIEKMASG--EPLNDDDRKPW-----LQALNDAAFAMQRT 66 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-------CCeEEeCccCCchhhhccccCC--CCCChhhHHHH-----HHHHHHHHHHHHHc
Confidence 4999999999999999997 4789999987432223333333 22111000011 1111112222 233
Q ss_pred CCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEEEEE
Q 013289 227 EGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELV 306 (446)
Q Consensus 227 ~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I~lv 306 (446)
.|.+||+ +|+..+.+++.+ ...+..+.++
T Consensus 67 ~~~~viv-~s~~~~~~r~~~--------------------------------------------------~~~~~~~~~v 95 (163)
T PRK11545 67 NKVSLIV-CSALKKHYRDLL--------------------------------------------------REGNPNLSFI 95 (163)
T ss_pred CCceEEE-EecchHHHHHHH--------------------------------------------------HccCCCEEEE
Confidence 4556666 888876665432 1123346779
Q ss_pred EEeCCHHHHHHHHHHhh
Q 013289 307 GVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 307 ~V~~d~elav~Rv~~R~ 323 (446)
+++||+++..+|+..|.
T Consensus 96 ~l~a~~~~l~~Rl~~R~ 112 (163)
T PRK11545 96 YLKGDFDVIESRLKARK 112 (163)
T ss_pred EEECCHHHHHHHHHhcc
Confidence 99999999999999996
No 46
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.82 E-value=4.1e-08 Score=88.67 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|+|+|++||||||+++.|++.+ ++.+++.|++
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~l-------g~~~~~~~~~ 34 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKL-------SLKLISAGDI 34 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc-------CCceecHHHH
Confidence 379999999999999999999987 4779998754
No 47
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.81 E-value=1.1e-07 Score=90.19 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|+|.|+|||||||+++.|++.+ ++.+|+++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~-------g~~~is~gdl 33 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY-------GLPHISTGDL 33 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-------CCCeeehhHH
Confidence 6889999999999999999987 4789998655
No 48
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.80 E-value=6e-08 Score=91.13 Aligned_cols=82 Identities=16% Similarity=0.219 Sum_probs=55.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC-CCCChhhhHHHHHHHHHHHHH
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAA 217 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~-g~~~d~~~~ae~v~~ea~~~a 217 (446)
..+|.+|.++|+|||||||+|..|.+.+. ..+-...++|.|.+ |..|+.. |++. ....+..+..
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~--~~G~~~y~LDGDnv------R~gL~~dLgFs~-------edR~eniRRv 84 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLF--AKGYHVYLLDGDNV------RHGLNRDLGFSR-------EDRIENIRRV 84 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHH--HcCCeEEEecChhH------hhcccCCCCCCh-------HHHHHHHHHH
Confidence 35689999999999999999999988874 44557889999998 4557653 3321 1122233333
Q ss_pred HHHHHHHHhCCCcEEEeC
Q 013289 218 SSLLVTALNEGRDVIMDG 235 (446)
Q Consensus 218 ~~li~~aL~~G~sVViD~ 235 (446)
..+..-...+|.-||+-.
T Consensus 85 aevAkll~daG~iviva~ 102 (197)
T COG0529 85 AEVAKLLADAGLIVIVAF 102 (197)
T ss_pred HHHHHHHHHCCeEEEEEe
Confidence 445555666776666553
No 49
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.78 E-value=1.1e-08 Score=96.21 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV 222 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~ 222 (446)
.+|.++|+.||||||+++.|.+ + |+.+||+|.+ .+.+...+ ...+ . .+.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~-------G~~vidaD~i------~~~l~~~~---~~~~----------~----~l~ 49 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-L-------GFPVIDADEI------AHELYEPG---SEGY----------K----ALK 49 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-T-------T-EEEEHHHH------HHHCTSCT---CHHH----------H----HHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-C-------CCCEECccHH------HHHHhhcC---HHHH----------H----HHH
Confidence 4789999999999999999988 4 5899999998 34454421 1110 0 111
Q ss_pred HHHhCCCcEEE-eCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCc
Q 013289 223 TALNEGRDVIM-DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY 301 (446)
Q Consensus 223 ~aL~~G~sVVi-D~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY 301 (446)
. ..|.+++- ||++.++...+.++...... ..+|.+-+|.-..+... +.. .....++
T Consensus 50 ~--~FG~~il~~~g~idR~~L~~~vF~d~~~~-----------------~~L~~iihP~I~~~~~~-~~~---~~~~~~~ 106 (180)
T PF01121_consen 50 E--RFGEEILDEDGEIDRKKLAEIVFSDPEKL-----------------KKLENIIHPLIREEIEK-FIK---RNKSEKV 106 (180)
T ss_dssp H--HHGGGGBETTSSB-HHHHHHHHTTSHHHH-----------------HHHHHHHHHHHHHHHHH-HHH---HCHSTSE
T ss_pred H--HcCccccCCCCCChHHHHHHHHhcCHHHH-----------------HHHHHHHhHHHHHHHHH-HHH---hccCCCE
Confidence 1 23566654 47777766665554433222 13444555543321110 000 0111133
Q ss_pred EE----------------EEEEEeCCHHHHHHHHHHhhh
Q 013289 302 RI----------------ELVGVVCDAYLAVVRGIRRAI 324 (446)
Q Consensus 302 ~I----------------~lv~V~~d~elav~Rv~~R~~ 324 (446)
.| .+++|+||++++++|+++|..
T Consensus 107 ~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~ 145 (180)
T PF01121_consen 107 VVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDG 145 (180)
T ss_dssp EEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHT
T ss_pred EEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCC
Confidence 33 488999999999999999974
No 50
>PRK04182 cytidylate kinase; Provisional
Probab=98.77 E-value=1.6e-07 Score=85.30 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|+|+|++||||||+++.|++.++ +.++|.|++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg-------~~~id~~~~ 34 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG-------LKHVSAGEI 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CcEecHHHH
Confidence 789999999999999999999874 679997654
No 51
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.77 E-value=6.6e-08 Score=89.67 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC-CCCC-hhhhHHHHHHHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHD-DMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~-g~~~-d~~~~ae~v~~ea~~~a~~l 220 (446)
++|.++|+|||||||+++.|++.+| ..+|++..+ ++++... |.+- ++...++. +.+.-......
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~g-------l~~vsaG~i------FR~~A~e~gmsl~ef~~~AE~-~p~iD~~iD~r 66 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLG-------LKLVSAGTI------FREMARERGMSLEEFSRYAEE-DPEIDKEIDRR 66 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhC-------CceeeccHH------HHHHHHHcCCCHHHHHHHHhc-CchhhHHHHHH
Confidence 3689999999999999999999985 789987655 3333332 2221 22222322 33333333334
Q ss_pred HHHHHhCCCcEEEeCcCC
Q 013289 221 LVTALNEGRDVIMDGTLS 238 (446)
Q Consensus 221 i~~aL~~G~sVViD~T~s 238 (446)
..+... ..|+|+|+-+.
T Consensus 67 q~e~a~-~~nvVlegrLA 83 (179)
T COG1102 67 QKELAK-EGNVVLEGRLA 83 (179)
T ss_pred HHHHHH-cCCeEEhhhhH
Confidence 444444 88999998765
No 52
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.76 E-value=5.9e-08 Score=106.82 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=64.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
.+|.+|+|+|+|||||||+|+.|+..+.+ .+.++++|+.|.++. .+.+. .+ +..+. ....+..+..
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~--~~~~~~~l~~D~~r~------~l~~~-~~----~~~~~-r~~~~~~l~~ 523 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHA--LGRHTYLLDGDNVRH------GLNRD-LG----FSDAD-RVENIRRVAE 523 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHH--cCCCEEEEcChhhhh------ccCCC-CC----CCHHH-HHHHHHHHHH
Confidence 35999999999999999999999998742 234689999999853 34431 11 11111 2223333444
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHH
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQT 246 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~l 246 (446)
+....+++|.+||+|.++..+..|+.+
T Consensus 524 ~a~~~~~~G~~Vivda~~~~~~~R~~~ 550 (632)
T PRK05506 524 VARLMADAGLIVLVSFISPFREERELA 550 (632)
T ss_pred HHHHHHhCCCEEEEECCCCCHHHHHHH
Confidence 666677899999999998887776543
No 53
>PRK07261 topology modulation protein; Provisional
Probab=98.76 E-value=5.4e-08 Score=90.10 Aligned_cols=104 Identities=18% Similarity=0.290 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 223 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~ 223 (446)
-|+|.|+|||||||+++.|+..+ +..+++.|.+.-. + ++.... .++ ..+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-------~~~~i~~D~~~~~--------~-~~~~~~-------~~~----~~~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-------NCPVLHLDTLHFQ--------P-NWQERD-------DDD----MIADISN 54 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-------CCCeEecCCEEec--------c-ccccCC-------HHH----HHHHHHH
Confidence 37899999999999999999886 3678888887311 1 111000 111 1224455
Q ss_pred HHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEE
Q 013289 224 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 303 (446)
Q Consensus 224 aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I 303 (446)
++.++. +|+||+++...+...+ .. . -
T Consensus 55 ~~~~~~-wIidg~~~~~~~~~~l----------------------------------~~----------------a---d 80 (171)
T PRK07261 55 FLLKHD-WIIDGNYSWCLYEERM----------------------------------QE----------------A---D 80 (171)
T ss_pred HHhCCC-EEEcCcchhhhHHHHH----------------------------------HH----------------C---C
Confidence 666655 9999998753211110 01 0 1
Q ss_pred EEEEEeCCHHHHHHHHHHhhhh-cCc
Q 013289 304 ELVGVVCDAYLAVVRGIRRAIM-MKR 328 (446)
Q Consensus 304 ~lv~V~~d~elav~Rv~~R~~~-gGR 328 (446)
.++++++|.++++.|+++|... .|+
T Consensus 81 ~vI~Ld~p~~~~~~R~lkR~~~~rg~ 106 (171)
T PRK07261 81 QIIFLNFSRFNCLYRAFKRYLKYRGK 106 (171)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence 3688999999999999999875 344
No 54
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.76 E-value=3.8e-08 Score=92.73 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=93.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
++|.+|++-|+|||||-|.+..+.+.++ +.|+++.++ +|.+....+ . + ...
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~-------ftHlSaGdL-----LR~E~~~~g---s-----e---------~g~ 56 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYG-------FTHLSAGDL-----LRAEIASAG---S-----E---------RGA 56 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcC-------ceeecHHHH-----HHHHHcccc---C-----h---------HHH
Confidence 5688999999999999999999999984 799998776 455554421 0 1 122
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
++...+++|.-|-.+.|.+ .++.-+....+ ..|| ++++|...+++. ..+++...+.
T Consensus 57 ~I~~~i~~G~iVP~ei~~~---LL~~am~~~~~--------~~~f-------LIDGyPR~~~q~------~~fe~~i~~~ 112 (195)
T KOG3079|consen 57 LIKEIIKNGDLVPVEITLS---LLEEAMRSSGD--------SNGF-------LIDGYPRNVDQL------VEFERKIQGD 112 (195)
T ss_pred HHHHHHHcCCcCcHHHHHH---HHHHHHHhcCC--------CCeE-------EecCCCCChHHH------HHHHHHhcCC
Confidence 6666777777766655432 11111111100 0123 345566555443 2222222221
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhhhcCcccc-hhhhhhHHHHHHHh
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANA 345 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~~gGR~Vp-v~~ql~r~~rf~~~ 345 (446)
+ --+++++|+.++++.|+..|...++|... ++++..|.+-|..+
T Consensus 113 ~--~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~ 157 (195)
T KOG3079|consen 113 P--DFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKS 157 (195)
T ss_pred C--CEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHc
Confidence 1 13578899999999999999988776555 77776666655544
No 55
>PRK06761 hypothetical protein; Provisional
Probab=98.75 E-value=4.4e-08 Score=98.20 Aligned_cols=148 Identities=14% Similarity=0.063 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCe-EEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA-VVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~-vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~l 220 (446)
+.+|+|+|+|||||||+++.|++.+.. .+-++ .+.++|..... .+.... .-......... ......+..+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~--~g~~v~~~~~~~~~~p~-----d~~~~~-~~~~eer~~~l-~~~~~f~~~l 73 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ--NGIEVELYLEGNLDHPA-----DYDGVA-CFTKEEFDRLL-SNYPDFKEVL 73 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc--CceEEEEEecCCCCCch-----hhcccc-CCCHHHHHHHH-HhhhHHHHHH
Confidence 579999999999999999999998741 11111 12334433211 121110 00011111111 1112333446
Q ss_pred HHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCC
Q 013289 221 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 300 (446)
Q Consensus 221 i~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~g 300 (446)
...++..|.++|+-..-..+.+++.+-
T Consensus 74 ~~~~~~~g~~~i~~~~~l~~~yr~~~~----------------------------------------------------- 100 (282)
T PRK06761 74 LKNVLKKGDYYLLPYRKIKNEFGDQFS----------------------------------------------------- 100 (282)
T ss_pred HHHHHHcCCeEEEEehhhhHHHhhhhh-----------------------------------------------------
Confidence 677777777777766555554444321
Q ss_pred cEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHhHHHhhcccceEEEeecCCCCC
Q 013289 301 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGG 366 (446)
Q Consensus 301 Y~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~~~~~~~lvD~~~lydnn~~g~ 366 (446)
+++.++.|+.. ||.+|.+.+.+++.+...+|.....+.|.+.+|+|+....
T Consensus 101 ----------~~~~~~~~v~~-----~h~~p~e~i~~R~~~rw~~f~~a~l~~dq~~ifE~s~~~~ 151 (282)
T PRK06761 101 ----------DELFNDISKND-----IYELPFDKNTELITDRWNDFAEIALEENKVYIFECCFIQN 151 (282)
T ss_pred ----------hhhcccceeee-----eecCCHHHHHHHHHHHHHHHHHHhhccCceEEEeccCcCC
Confidence 11222222111 6788888888888888888988888999999999766543
No 56
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.75 E-value=4.2e-07 Score=80.71 Aligned_cols=32 Identities=34% Similarity=0.392 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|+|.|+|||||||+++.|++.++ +.++++|.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~-------~~~~~~d~~ 33 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG-------LPFVDLDEL 33 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-------CCEEEchHH
Confidence 68999999999999999999874 679999987
No 57
>PRK06217 hypothetical protein; Validated
Probab=98.74 E-value=3.4e-08 Score=91.77 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
-|+|.|+|||||||+++.|++.+ +..+++.|.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-------~~~~~~~D~~~ 36 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-------DIPHLDTDDYF 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-------CCcEEEcCcee
Confidence 48999999999999999999997 46799999883
No 58
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.74 E-value=8.4e-08 Score=91.10 Aligned_cols=126 Identities=19% Similarity=0.220 Sum_probs=72.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 223 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~ 223 (446)
+|.++|++||||||+++.|... ++.+||+|.+. +.+...+ ... .. .+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~--------g~~~i~~D~i~------~~~~~~~---~~~------~~--------~i~~ 49 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL--------GAFGISADRLA------KRYTEPD---SPI------LS--------ELVS 49 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC--------CCEEEecchHH------HHHHhcC---cHH------HH--------HHHH
Confidence 5789999999999999988653 47899999983 3333311 000 00 1111
Q ss_pred HHhCCCcEEE-eCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcE
Q 013289 224 ALNEGRDVIM-DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYR 302 (446)
Q Consensus 224 aL~~G~sVVi-D~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~ 302 (446)
..|..++- |+++.+....+.++...... ..+|.+.+|.-..+.. .... .....++.
T Consensus 50 --~fG~~i~~~~g~idr~~L~~~vF~~~~~~-----------------~~L~~i~hP~v~~~~~-~~~~---~~~~~~~v 106 (196)
T PRK14732 50 --LLGPSILDENGKPNRKKISEIVFNDEEKL-----------------KALNELIHPLVRKDFQ-KILQ---TTAEGKLV 106 (196)
T ss_pred --HhChhhcCCCCccCHHHHHHHHhCCHHHH-----------------HHHHHHhhHHHHHHHH-HHHH---HHhcCCcE
Confidence 24556654 47777766666555433322 2344455554332110 0000 00111232
Q ss_pred E----------------EEEEEeCCHHHHHHHHHHhh
Q 013289 303 I----------------ELVGVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 303 I----------------~lv~V~~d~elav~Rv~~R~ 323 (446)
| .+++|+||++++++|+..|.
T Consensus 107 i~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~ 143 (196)
T PRK14732 107 IWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRD 143 (196)
T ss_pred EEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcC
Confidence 2 47889999999999999995
No 59
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.72 E-value=1.8e-07 Score=96.12 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+.++.|+|||||||+++.|...+.. ..+-.+.+++.|++-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~-~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRR-ERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh-ccCCeEEEEcccccc
Confidence 4689999999999999998866521 123467899999874
No 60
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.71 E-value=1.2e-07 Score=90.02 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.++|++||||||+++.|.. + ++++||+|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~-------g~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E-------GFLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-------CCeEEeCcHH
Confidence 4799999999999999999986 3 4899999988
No 61
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.70 E-value=5.4e-08 Score=92.15 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.|+|++||||||+++.|.+.+ |+.+||+|.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-------g~~~i~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-------GIPILDADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-------CCeEeeCcHH
Confidence 379999999999999999999875 4789999998
No 62
>PRK06547 hypothetical protein; Provisional
Probab=98.70 E-value=1.8e-07 Score=87.12 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.+|+|.|++||||||+++.|++.+ +..+|+.|.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~-------~~~~~~~d~~ 49 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART-------GFQLVHLDDL 49 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-------CCCeecccce
Confidence 568899999999999999999999986 4678998887
No 63
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.70 E-value=1.3e-07 Score=92.98 Aligned_cols=34 Identities=35% Similarity=0.569 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.++|++||||||+++.|.+.+ |+.+||+|.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~-------G~~viDaD~i 35 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH-------HIEVIDADLV 35 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-------CCeEEehHHH
Confidence 579999999999999999999865 4799999998
No 64
>PRK14530 adenylate kinase; Provisional
Probab=98.70 E-value=5.1e-07 Score=86.01 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|+|.|+|||||||+++.|++.+ ++.+|+.|++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~-------~~~~i~~g~~ 37 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF-------GVEHVTTGDA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-------CCeEEeccHH
Confidence 47889999999999999999997 4789988776
No 65
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.69 E-value=1.7e-07 Score=102.18 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
++|.+|+|+|+|||||||+++.|++.+++ ..+..+.++|.|.+ ++.+.+. . .+..+. .......+..
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~-~~g~~~~~lD~D~v------r~~l~ge--~---~f~~~e-r~~~~~~l~~ 456 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLME-MRGRPVTLLDGDVV------RKHLSSE--L---GFSKED-RDLNILRIGF 456 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhh-ccCceEEEeCCcHH------HHhccCC--C---CCCHHH-HHHHHHHHHH
Confidence 56889999999999999999999999853 12224689999987 3445442 1 011111 1111222223
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHH
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIA 248 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia 248 (446)
+....++.|..||++.++..+..++...+
T Consensus 457 ~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~ 485 (568)
T PRK05537 457 VASEITKNGGIAICAPIAPYRATRREVRE 485 (568)
T ss_pred HHHHHHhCCCEEEEEeCCchHHHHHHHHH
Confidence 45667789999999999888766665543
No 66
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.69 E-value=7.7e-08 Score=89.35 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|+|+|++||||||+++.|.+ + ++.+||+|.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-------g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-------GIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-------CCCEEecCHH
Confidence 489999999999999999988 5 4789999988
No 67
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.68 E-value=6.1e-07 Score=80.85 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.+|+|.|+|||||||+++.|++.++ ..++|.|.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~-------~~~~d~d~~ 38 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG-------YDFIDTDHL 38 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC-------CCEEEChHH
Confidence 3578999999999999999999999974 678999987
No 68
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.68 E-value=1.9e-06 Score=83.02 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=52.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEE-Ee
Q 013289 101 TKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-VE 179 (446)
Q Consensus 101 ~~~~~~~r~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vv-Id 179 (446)
-+|+.+.+.|..|++.++.... ....|.++.|+|+|||||||+++.|+..+. ..++...+ |.
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~ 69 (229)
T PRK09270 7 YRDEEIEAVHKPLLRRLAALQA---------------EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVP 69 (229)
T ss_pred cChHhHHHHHHHHHHHHHHHHh---------------cCCCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEe
Confidence 4678889999999998877763 225689999999999999999999988763 11223345 88
Q ss_pred Ccccccc
Q 013289 180 ADAFKET 186 (446)
Q Consensus 180 aD~ir~~ 186 (446)
.|.+...
T Consensus 70 ~D~~~~~ 76 (229)
T PRK09270 70 MDGFHLD 76 (229)
T ss_pred cccccCC
Confidence 8887543
No 69
>PRK14528 adenylate kinase; Provisional
Probab=98.67 E-value=3.4e-07 Score=85.80 Aligned_cols=47 Identities=11% Similarity=-0.015 Sum_probs=35.4
Q ss_pred EEEEEeCCHHHHHHHHHHhhhhcCcccc-hhhhhhHHHHHHHhHHHhh
Q 013289 304 ELVGVVCDAYLAVVRGIRRAIMMKRAVR-VNSQLKSHKRFANAFRNYC 350 (446)
Q Consensus 304 ~lv~V~~d~elav~Rv~~R~~~gGR~Vp-v~~ql~r~~rf~~~~~~~~ 350 (446)
.+++++||+++++.|...|....||.-. .+.+.+|...|.+......
T Consensus 110 ~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~ 157 (186)
T PRK14528 110 KAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLL 157 (186)
T ss_pred EEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence 3577899999999999999888888754 6777777666666554333
No 70
>PRK08118 topology modulation protein; Reviewed
Probab=98.67 E-value=2e-07 Score=86.14 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-|+|.|+|||||||+|+.|++.+ +..+++.|.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-------~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-------NIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-------CCCceecchh
Confidence 37899999999999999999997 4778888876
No 71
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.65 E-value=5.4e-07 Score=83.95 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.+++|.|||||||||+++.|+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998875
No 72
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.65 E-value=1.1e-07 Score=90.80 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.++.++|+.||||||+++.+.+ + ++.+||+|.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~~-~-------G~~vIDaD~v 34 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFKA-L-------GIPVIDADVV 34 (225)
T ss_pred eEEEeecccccChHHHHHHHHH-c-------CCcEecHHHH
Confidence 5789999999999999999984 3 5899999987
No 73
>PRK04040 adenylate kinase; Provisional
Probab=98.64 E-value=5.4e-07 Score=85.04 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|.+|+++|+|||||||+++.|++.+. .+..+++.+++
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~-----~~~~~~~~g~~ 38 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLK-----EDYKIVNFGDV 38 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhc-----cCCeEEecchH
Confidence 378999999999999999999999872 25778888876
No 74
>PRK13946 shikimate kinase; Provisional
Probab=98.64 E-value=1e-06 Score=82.23 Aligned_cols=36 Identities=31% Similarity=0.273 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+..|++.|++||||||+++.|++.++ +.++|.|..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg-------~~~id~D~~ 44 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG-------LPFLDADTE 44 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-------CCeECcCHH
Confidence 567899999999999999999999985 679999975
No 75
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.63 E-value=2.8e-07 Score=87.91 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+.|.+|.++|++||||||+++.|.. + ++.++|+|.+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~-------g~~v~d~D~i~ 39 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-M-------GCELFEADRVA 39 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C-------CCeEEeccHHH
Confidence 4578999999999999999999986 3 47899999773
No 76
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.61 E-value=1.4e-07 Score=89.29 Aligned_cols=86 Identities=28% Similarity=0.468 Sum_probs=60.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcc--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFW--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTA 206 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~--------------~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~a 206 (446)
++.+++++||+|+||||+.+.|.+...+ .-.+.++.+|+.++|. .+... +..++.+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~-------~~i~~---~~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFE-------ELIER---DEFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHH-------HHHhc---CCcEEEE
Confidence 6899999999999999999999887543 3344556777777763 22222 1333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEeCcC
Q 013289 207 ELVHQSSTDAASSLLVTALNEGRDVIMDGTL 237 (446)
Q Consensus 207 e~v~~ea~~~a~~li~~aL~~G~sVViD~T~ 237 (446)
++ +...+.....-++.++++|++||+|-..
T Consensus 73 ~~-~gnyYGT~~~~ve~~~~~G~~vildId~ 102 (191)
T COG0194 73 EY-HGNYYGTSREPVEQALAEGKDVILDIDV 102 (191)
T ss_pred EE-cCCcccCcHHHHHHHHhcCCeEEEEEeh
Confidence 44 3344455556888999999999999754
No 77
>PRK13947 shikimate kinase; Provisional
Probab=98.60 E-value=2.4e-06 Score=77.63 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=29.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
|++.|+|||||||+++.|++.++ +.+||.|.+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg-------~~~id~d~~~ 36 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLS-------FGFIDTDKEI 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-------CCEEECchhh
Confidence 89999999999999999999985 6799999873
No 78
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.59 E-value=3.8e-07 Score=86.21 Aligned_cols=40 Identities=30% Similarity=0.593 Sum_probs=34.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.+|.|+|+|||||||+++.|...++ +..+.+|+.|.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG----DESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC----CCceEEEeCCcc
Confidence 4689999999999999999999999863 346788999987
No 79
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.59 E-value=2.1e-07 Score=87.68 Aligned_cols=86 Identities=26% Similarity=0.489 Sum_probs=52.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc-c--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF-W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ 204 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~-~--------------~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~ 204 (446)
..|.+|+|+||+||||||+++.|.+..+ . +..+.++.+|+.++|. +.+... .+..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~------~~i~~~----~f~e 71 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFK------KGIADG----EFLE 71 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHH------HHHHcC----CeEE
Confidence 4689999999999999999999988752 0 0112234445444441 112111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCc
Q 013289 205 TAELVHQSSTDAASSLLVTALNEGRDVIMDGT 236 (446)
Q Consensus 205 ~ae~v~~ea~~~a~~li~~aL~~G~sVViD~T 236 (446)
..++ +...+....+-+...+++|+.+|+|..
T Consensus 72 ~~~~-~g~~YGt~~~~i~~~~~~g~~~i~d~~ 102 (186)
T PRK14737 72 WAEV-HDNYYGTPKAFIEDAFKEGRSAIMDID 102 (186)
T ss_pred EEEE-CCeeecCcHHHHHHHHHcCCeEEEEcC
Confidence 1111 333444455568889999999999974
No 80
>PRK03839 putative kinase; Provisional
Probab=98.58 E-value=3.2e-07 Score=84.65 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|+|.|+|||||||+++.|++.+ ++.++|.|++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-------~~~~id~d~~ 34 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-------GYEYVDLTEF 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-------CCcEEehhhh
Confidence 58999999999999999999997 4789999876
No 81
>PRK00625 shikimate kinase; Provisional
Probab=98.58 E-value=2.6e-06 Score=79.55 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|+|.|.|||||||+++.|++.++ +.+||.|.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~-------~~~id~D~~ 34 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS-------LPFFDTDDL 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CCEEEhhHH
Confidence 489999999999999999999974 789999976
No 82
>PRK02496 adk adenylate kinase; Provisional
Probab=98.58 E-value=2.5e-06 Score=78.91 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-++|.|+|||||||+++.|++.+ ++.+++.|++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~-------~~~~i~~~~~ 35 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL-------HIPHISTGDI 35 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-------CCcEEEhHHH
Confidence 47889999999999999999987 4788988665
No 83
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.57 E-value=6.5e-07 Score=83.47 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+|+|+|++||||||+++.|.+.. ++.+||+|.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-------~~~~i~~D~~~ 34 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-------HFPVIDADKIA 34 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-------CCeEEeCCHHH
Confidence 48899999999999999998873 47899999984
No 84
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.55 E-value=3.7e-06 Score=76.66 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..|++.|++||||||+++.|++.++ +.++|.|.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg-------~~~~d~D~~~ 37 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG-------YRFVDTDQWL 37 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-------CCEEEccHHH
Confidence 3477889999999999999999974 6799999874
No 85
>PRK08233 hypothetical protein; Provisional
Probab=98.55 E-value=1.5e-06 Score=79.33 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
++.+|+|+|+|||||||+++.|++.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999999999873
No 86
>PRK07667 uridine kinase; Provisional
Probab=98.53 E-value=8.1e-07 Score=83.63 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=34.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.+|.|+|++||||||+++.|++.+. ..+.+..+|+.|.+
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~--~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMK--QEGIPFHIFHIDDY 56 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEEcCcc
Confidence 4458999999999999999999998763 22345789999987
No 87
>PLN02674 adenylate kinase
Probab=98.52 E-value=1.7e-06 Score=85.30 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=32.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.+.-|++.|||||||||+++.|++.+ ++++|+++++
T Consensus 28 ~~~~~~i~l~G~PGsGKgT~a~~La~~~-------~~~his~Gdl 65 (244)
T PLN02674 28 SKPDKRLILIGPPGSGKGTQSPIIKDEY-------CLCHLATGDM 65 (244)
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHc-------CCcEEchhHH
Confidence 3445668899999999999999999997 4789998766
No 88
>PRK08356 hypothetical protein; Provisional
Probab=98.51 E-value=5e-06 Score=78.17 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
.+|+++|||||||||+++.|. ++ ++.+|+..+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~-------g~~~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EK-------GFCRVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HC-------CCcEEeCCC
Confidence 578999999999999999995 44 356777664
No 89
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.50 E-value=4.5e-06 Score=81.17 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=59.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCC---Chh-hhHHHHHHHHH-H
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH---DDM-LQTAELVHQSS-T 214 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~---~d~-~~~ae~v~~ea-~ 214 (446)
..+.+|+|.|.||.|||++|+.|..-+.|.+ -.+-++|..++| +.+.+.... .++ ...+....+.. .
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g--~~~~vFn~g~yR------R~~~~~~~~~~ff~p~n~~~~~~R~~~a~ 81 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLG--VKTKVFNVGDYR------RKLSGAPQDAEFFDPDNEEAKKLREQIAK 81 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT----EEEEEHHHHH------HHHHSS-S-GGGGSTT-HHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcC--CCcceeecccce------ecccccccccccCCCCChHHHHHHHHHHH
Confidence 5679999999999999999999999888853 357788877763 334432100 011 11122223333 3
Q ss_pred HHHHHHHHHHHhC-CCcEEEeCcCCCHHHHHHHHHH
Q 013289 215 DAASSLLVTALNE-GRDVIMDGTLSWVPFVEQTIAM 249 (446)
Q Consensus 215 ~~a~~li~~aL~~-G~sVViD~T~s~~~~re~lia~ 249 (446)
..+..++.-..++ |.--|+|+|.++++.|+.+.+.
T Consensus 82 ~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~ 117 (222)
T PF01591_consen 82 EALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVER 117 (222)
T ss_dssp HHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4444555544424 4455889999999888877554
No 90
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.49 E-value=5e-06 Score=92.34 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=92.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCC-hhhhHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD-DMLQTAELVHQSSTDAAS 218 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~-d~~~~ae~v~~ea~~~a~ 218 (446)
....+++|.|.||+||||+++.|++.+.|. +-++.+++.|.+ ++.+...+... +.......-......++.
T Consensus 213 ~~~~~~~~vglp~~GKStia~~L~~~l~~~--~~~~~~~~~~~~------rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 284 (664)
T PTZ00322 213 MGSLIVIMVGLPGRGKTYVARQIQRYFQWN--GLQSRIFIHQAY------RRRLERRGGAVSSPTGAAEVEFRIAKAIAH 284 (664)
T ss_pred ccceeEEecccCCCChhHHHHHHHHHHHhc--CCCcEEEccchh------HhhhccCCCCcCCCCCHHHHHHHHHHHHHH
Confidence 345799999999999999999999998762 223455555554 34454221110 111111111112223333
Q ss_pred HHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 219 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
.+..-.+..|..+|+|+|......+..+++.+++. ...
T Consensus 285 d~~~~v~~~GgvaI~DatN~t~~rR~~~~~~~~~~------------------------------------------~~~ 322 (664)
T PTZ00322 285 DMTTFICKTDGVAVLDGTNTTHARRMALLRAIRET------------------------------------------GLI 322 (664)
T ss_pred HHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHc------------------------------------------CCC
Confidence 34444556688999999999976666655543221 112
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHhHHHhhc
Q 013289 299 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCE 351 (446)
Q Consensus 299 ~gY~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~~~~~~~ 351 (446)
.|..|.++-+.|+....+.|-+.|........+.+...+-++++...-+.|..
T Consensus 323 ~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~~~Ye~ 375 (664)
T PTZ00322 323 RMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLEAVYKS 375 (664)
T ss_pred ccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 34556667677888777888888876555544444333333333333333433
No 91
>PTZ00301 uridine kinase; Provisional
Probab=98.48 E-value=5.4e-07 Score=86.70 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCC-eEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~-~vvIdaD~i 183 (446)
.+|.|+|+|||||||+|+.|.+.+. ...++. +.++.-|.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~-~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM-AHCGPVSIGVICEDFY 44 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH-hhcCCCeEEEeCCCCC
Confidence 7899999999999999998876641 000122 447888877
No 92
>PRK13948 shikimate kinase; Provisional
Probab=98.48 E-value=1.8e-06 Score=81.33 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+.|..|++.|+|||||||+++.|++.++ ..+||+|.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg-------~~~iD~D~~i 45 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM-------LHFIDTDRYI 45 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC-------CCEEECCHHH
Confidence 5678999999999999999999999984 6789999763
No 93
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.48 E-value=4.4e-06 Score=77.66 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+|++.|++||||||+++.|.+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~ 24 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG 24 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998753
No 94
>PLN02348 phosphoribulokinase
Probab=98.47 E-value=1.2e-06 Score=91.58 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=35.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC-------------CCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-------------ATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~-------------~~~~vvIdaD~ir 184 (446)
..|.+|.|+|++||||||+++.|...++-... ...+.+|..|++-
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 56899999999999999999999998751100 1246789999884
No 95
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.47 E-value=2.2e-05 Score=71.95 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+|++.|++||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999886
No 96
>PLN02422 dephospho-CoA kinase
Probab=98.45 E-value=8.3e-07 Score=86.79 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.++|++||||||+++.|.+ + |+.+||+|.+
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~-------g~~~idaD~~ 34 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-S-------GIPVVDADKV 34 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-------CCeEEehhHH
Confidence 3799999999999999999984 4 4789999988
No 97
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.45 E-value=2.7e-05 Score=72.43 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
++.+|++.|++||||||+++.|++.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999999875
No 98
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.44 E-value=6.8e-07 Score=81.94 Aligned_cols=24 Identities=38% Similarity=0.771 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+|+|.||+||||||+++.|+..+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999864
No 99
>PRK13973 thymidylate kinase; Provisional
Probab=98.43 E-value=3.1e-05 Score=74.07 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEE-eCcccccchHHHHHHhcCC-CCChhhhHHHHHHHH-HHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKG-HHDDMLQTAELVHQS-STDAA 217 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvI-daD~ir~~d~irk~L~~~g-~~~d~~~~ae~v~~e-a~~~a 217 (446)
.+.+|++-|+.||||||.++.|++.+. ..+-.+++. .|+.-.....++..+.... ...++. +....+.. -....
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~--~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~-~~~ll~~a~r~~~~ 78 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLR--AAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPR-MEALLFAAARDDHV 78 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHH-HHHHHHHHHHHHHH
Confidence 368999999999999999999999873 111122222 1322111233444444310 000111 11111111 12333
Q ss_pred HHHHHHHHhCCCcEEEeCc
Q 013289 218 SSLLVTALNEGRDVIMDGT 236 (446)
Q Consensus 218 ~~li~~aL~~G~sVViD~T 236 (446)
...+..+++.|..||.|--
T Consensus 79 ~~~i~~~l~~g~~Vi~DRy 97 (213)
T PRK13973 79 EEVIRPALARGKIVLCDRF 97 (213)
T ss_pred HHHHHHHHHCCCEEEEcch
Confidence 4567889999999999953
No 100
>PRK13808 adenylate kinase; Provisional
Probab=98.40 E-value=8.2e-06 Score=83.77 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|+|.|||||||||++..|++.+ ++++|+.|++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y-------gl~~is~gdl 34 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY-------GIVQLSTGDM 34 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-------CCceecccHH
Confidence 7889999999999999999997 4799998766
No 101
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.39 E-value=7.6e-05 Score=69.24 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+.+|++.|++||||||+++.|++.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999874
No 102
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.37 E-value=7e-06 Score=79.28 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++.+|.|.||+||||||+++.|+++++ ..+++++.+
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~~-------~~~~~~g~~ 36 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKLG-------YAYLDSGAM 36 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-------CceeeCchH
Confidence 367899999999999999999999874 678888876
No 103
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.37 E-value=8.1e-06 Score=75.66 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+..|++.|++||||||+++.|+..+ +..++|.|..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l-------~~~~vd~D~~ 38 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL-------NMEFYDSDQE 38 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc-------CCcEEECCch
Confidence 4579999999999999999999987 4789999975
No 104
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.36 E-value=1.6e-05 Score=74.54 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
=|++.|+|||||||+.+.|++.+ +..++|.|.+-
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L-------~~~F~D~D~~I 37 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL-------NLPFIDTDQEI 37 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc-------CCCcccchHHH
Confidence 47899999999999999999998 58899999873
No 105
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.35 E-value=2.3e-06 Score=81.51 Aligned_cols=87 Identities=24% Similarity=0.423 Sum_probs=49.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc-c--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF-W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ 204 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~-~--------------~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~ 204 (446)
..|.+|+|.||+||||||+++.|.+... . ...+.++.+|+.++|. +.+... ....
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~------~~~~~~----~~le 80 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFR------EMISQN----ELLE 80 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHH------HHHHcC----CcEE
Confidence 5689999999999999999999976421 0 0111223344444331 112110 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCcC
Q 013289 205 TAELVHQSSTDAASSLLVTALNEGRDVIMDGTL 237 (446)
Q Consensus 205 ~ae~v~~ea~~~a~~li~~aL~~G~sVViD~T~ 237 (446)
..+. +...+......+..++++|+.+|++.+.
T Consensus 81 ~~~~-~g~~YGt~~~~i~~~~~~g~~vi~~~~~ 112 (206)
T PRK14738 81 WAEV-YGNYYGVPKAPVRQALASGRDVIVKVDV 112 (206)
T ss_pred EEEE-cCceecCCHHHHHHHHHcCCcEEEEcCH
Confidence 1111 2223333344678889999999998754
No 106
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.34 E-value=6.2e-06 Score=77.35 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCC----CeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAAT----NAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~----~~vvIdaD~ir 184 (446)
+|.|+|++||||||+|+.|...++ ..+. ...++..|.+-
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccc
Confidence 689999999999999999999874 1111 25677888773
No 107
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.34 E-value=2e-06 Score=80.55 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+|.|+|++||||||+++.|...++ +.++.+++.|.+-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCCeEEEEecccc
Confidence 588999999999999999988752 3468899999873
No 108
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.33 E-value=1.3e-06 Score=80.28 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.+++|.|+|||||||+++.|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988764
No 109
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.32 E-value=1.4e-05 Score=71.65 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=26.5
Q ss_pred EEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 147 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 147 laG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|-|||||||||+++.|++++ +.++|+.+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~-------~~~~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-------GLVHISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-------TSEEEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc-------CcceechHHH
Confidence 57999999999999999997 4899997665
No 110
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.31 E-value=8.8e-06 Score=79.34 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|.-|+|.|||||||||+++.|++.+ ++.+|+.|++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~-------g~~~is~gdl 40 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKE-------NLKHINMGNI 40 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-------CCcEEECChH
Confidence 45559999999999999999999997 4799999887
No 111
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.30 E-value=4.1e-06 Score=78.49 Aligned_cols=27 Identities=37% Similarity=0.714 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.+.+|+|.||+||||||+++.|+..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456899999999999999999999875
No 112
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.29 E-value=5.3e-07 Score=77.11 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|+|+|+|||||||+++.|++.+ ++.+|+.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-------~~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-------GFPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-------TCEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-------CCeEEEecce
Confidence 58999999999999999999997 4788998884
No 113
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.27 E-value=1.5e-06 Score=82.34 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|.|+|++||||||+++.|++.++ ++.+|+.|.|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~------~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP------NCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC------CCeEEccccc
Confidence 588999999999999999999862 5889999988
No 114
>PRK13949 shikimate kinase; Provisional
Probab=98.26 E-value=5.5e-05 Score=70.08 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-|+|.|+|||||||+++.|++.++ +.+||.|.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~-------~~~id~D~~ 35 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG-------LSFIDLDFF 35 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-------CCeecccHH
Confidence 388999999999999999999974 689999976
No 115
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.25 E-value=2.4e-06 Score=79.76 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+|.|+|++||||||+++.|+..+. ..+.++.+|+.|.|-
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~--~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR--VNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEehhhcc
Confidence 589999999999999999998863 223468899999984
No 116
>PRK14526 adenylate kinase; Provisional
Probab=98.25 E-value=2.6e-05 Score=75.09 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+++.|+|||||||+++.|++.+ +..+|+++++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~-------~~~~is~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL-------NYYHISTGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-------CCceeecChH
Confidence 6789999999999999999886 3678887766
No 117
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.24 E-value=1.7e-05 Score=75.09 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+.+|.|+|+|||||||+++.|...+. ..++.+++.|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~----~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG----KLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc----ccCCeEeccccc
Confidence 5678999999999999999999998763 135678888876
No 118
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.24 E-value=2.9e-05 Score=78.89 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=54.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC------------CCCC-hhhh-H
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK------------GHHD-DMLQ-T 205 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~------------g~~~-d~~~-~ 205 (446)
.+|.+|+|+||+||||||++..|++.+ +..+|++|.+. +|+.+.-. .|.. +... .
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~-------~~~iis~Ds~Q----vy~~l~i~Takp~~~E~~gv~hhlid~~~~~ 70 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRL-------NGEIISADSMQ----VYRGMDIGTAKPTAEERAGVPHHLIDILDPT 70 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhC-------CCcEEeccccc----eeecccccCCCCCHHHHcCccEEeecccChh
Confidence 457899999999999999999999986 46899999862 23443211 0100 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEe
Q 013289 206 AELVHQSSTDAASSLLVTALNEGRDVIMD 234 (446)
Q Consensus 206 ae~v~~ea~~~a~~li~~aL~~G~sVViD 234 (446)
..+.-......+...++.+++.|+..|++
T Consensus 71 ~~~s~~~f~~~a~~~i~~i~~~gk~pIlv 99 (307)
T PRK00091 71 ESYSVADFQRDALAAIADILARGKLPILV 99 (307)
T ss_pred hcccHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 11111233456677888899999998886
No 119
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.23 E-value=4.4e-05 Score=73.28 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+|++-|..||||||+++.|++.++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999874
No 120
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.22 E-value=4.5e-06 Score=71.17 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l 166 (446)
|+|+|+|||||||+++.|.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999984
No 121
>PRK07429 phosphoribulokinase; Provisional
Probab=98.19 E-value=1.7e-05 Score=81.17 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=34.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..+|.+|.|+|++||||||+++.|+..++ ..+..+|..|.+.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~----~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLG----EELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhc----cCceEEEEecccc
Confidence 36799999999999999999999998864 1235678888874
No 122
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.16 E-value=7.2e-06 Score=85.88 Aligned_cols=33 Identities=45% Similarity=0.672 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.|+|++||||||+++.|++ + |+.+||+|.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~-------G~~vidaD~i 34 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L-------GAVVVDADVL 34 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-------CCeEEehHHH
Confidence 3589999999999999999987 4 4789999988
No 123
>PRK15453 phosphoribulokinase; Provisional
Probab=98.15 E-value=9.9e-06 Score=81.49 Aligned_cols=44 Identities=32% Similarity=0.404 Sum_probs=35.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+++.+|.|+|+|||||||+++.|+..++ ..+.++++|+.|.+-.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~--~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR--RENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeEEEecccccc
Confidence 4578999999999999999999987663 1223588999999854
No 124
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.14 E-value=9.5e-06 Score=75.57 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
++++++.||+||||+|++..|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999998874
No 125
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.13 E-value=3.1e-05 Score=77.36 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
++.|+|++||||||+++.|...++ ..+..+|..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~----~~~~~vi~~Dd~~~ 38 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG----SDLVTVICLDDYHS 38 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC----CCceEEEECccccc
Confidence 578999999999999999998763 23567888898743
No 126
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.12 E-value=1.2e-05 Score=80.49 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+|.++|++||||||+++.+.+.++ ..+..+.+|+.|.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~--~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA--REGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcCCceEEEecccccc
Confidence 578999999999999999988763 1223578999999854
No 127
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.11 E-value=6.7e-05 Score=75.97 Aligned_cols=37 Identities=24% Similarity=0.108 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.++..|+++|+|||||||+++.|++.+| +.+||.|..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg-------~~~id~D~~ 167 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLG-------VPFVELNRE 167 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcC-------CCEEeHHHH
Confidence 4467899999999999999999999985 568888754
No 128
>PRK13975 thymidylate kinase; Provisional
Probab=98.07 E-value=0.00022 Score=66.17 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+.+|++.|++||||||+++.|++.++
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999999999984
No 129
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.05 E-value=0.0002 Score=65.25 Aligned_cols=26 Identities=38% Similarity=0.333 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 151 MGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 151 ~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|||||||+++.|++.++ ..++|.|.+
T Consensus 1 ~GsGKStvg~~lA~~L~-------~~fiD~D~~ 26 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG-------RPFIDLDDE 26 (158)
T ss_dssp TTSSHHHHHHHHHHHHT-------SEEEEHHHH
T ss_pred CCCcHHHHHHHHHHHhC-------CCccccCHH
Confidence 79999999999999985 689999987
No 130
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.03 E-value=4.4e-05 Score=83.57 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..+.+|.|+|||||||||+++.|+..++ +..+|..|.+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp------~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC------CcEEEEEccee
Confidence 4578999999999999999999998753 46788888874
No 131
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.03 E-value=9.9e-06 Score=75.21 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+++++|.||+||||||+++.|.+.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999998875
No 132
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.03 E-value=7.1e-05 Score=83.24 Aligned_cols=64 Identities=13% Similarity=0.231 Sum_probs=51.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEE
Q 013289 99 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 178 (446)
Q Consensus 99 ~v~~~~~~~r~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvI 178 (446)
.|+.-..+.+.|-...+.++.++.. + .+....|.+.||+||||||+++.|+++++ +.++
T Consensus 413 ~I~~~~~v~ksyP~F~~~l~~Lg~~---~-----------~~~~~~i~i~g~~~~gks~~~~~l~~~~~-------~~~~ 471 (661)
T PRK11860 413 RINDPKCVAKTFPDYFEALFSVAQA---D-----------ADRVPVICIDGPTASGKGTVAARVAEALG-------YHYL 471 (661)
T ss_pred EEeccCeeecCCCChHHHHHHhcCC---c-----------ccCcceEEeeCCCCCCHHHHHHHHHHHhC-------CeEe
Confidence 4666678889999999999999851 1 12234788899999999999999999984 6789
Q ss_pred eCccc
Q 013289 179 EADAF 183 (446)
Q Consensus 179 daD~i 183 (446)
|+|.+
T Consensus 472 ~~~~~ 476 (661)
T PRK11860 472 DSGAL 476 (661)
T ss_pred cHHHh
Confidence 98877
No 133
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.01 E-value=7.8e-05 Score=70.05 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=29.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|+|-|+|||||||+|+.|++.+ +.++||+|++
T Consensus 3 iiilG~pGaGK~T~A~~La~~~-------~i~hlstgd~ 34 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL-------GLPHLDTGDI 34 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-------CCcEEcHhHH
Confidence 7889999999999999999997 4899998776
No 134
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.01 E-value=0.00066 Score=62.81 Aligned_cols=173 Identities=19% Similarity=0.205 Sum_probs=84.4
Q ss_pred EEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe-Ccc-cccchHHHHHHhcCCCCChhhhHHHHHHHHH-HHHHHHHHHH
Q 013289 147 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADA-FKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASSLLVT 223 (446)
Q Consensus 147 laG~~GSGKSTvAr~La~~l~~~~~~~~~vvId-aD~-ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea-~~~a~~li~~ 223 (446)
+-|+.||||||+++.|.+.+. +.+.. +++. +.. -.-...++..+.... ..++. +....+... .......+..
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~--~~~~~-~~~~~~~~~~~~g~~ir~~l~~~~-~~~~~-~~~~l~~a~r~~~~~~~I~~ 75 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALK--EKGYK-VIITFPPGSTPIGELIRELLRSES-ELSPE-AEALLFAADRAWHLARVIRP 75 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHH--HTTEE-EEEEESSTSSHHHHHHHHHHHTSS-TCGHH-HHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH--HcCCc-ccccCCCCCChHHHHHHHHHhccc-CCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999998874 12222 2332 111 000122333344211 11221 111112111 2334457788
Q ss_pred HHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCcEE
Q 013289 224 ALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRI 303 (446)
Q Consensus 224 aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY~I 303 (446)
+++.|..||+|--... . +|... ..| .+ +...+ |. +.. ......|-
T Consensus 76 ~l~~g~~VI~DRy~~S------~--lay~~-------~~~-~~--~~~~~---~~-~~~-----------~~~~~~PD-- 120 (186)
T PF02223_consen 76 ALKRGKIVICDRYIYS------T--LAYQG-------AKG-EL--DIDWI---WR-LNK-----------DIFLPKPD-- 120 (186)
T ss_dssp HHHTTSEEEEESEHHH------H--HHHHT-------TTT-SS--THHHH---HH-HHH-----------HHHTTE-S--
T ss_pred HHcCCCEEEEechhHH------H--HHhCc-------ccc-CC--cchhh---hH-HHH-----------HhcCCCCC--
Confidence 9999999999943211 1 11110 000 00 00111 10 100 00111331
Q ss_pred EEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHhHHHhhcccceEEEeecC
Q 013289 304 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN 362 (446)
Q Consensus 304 ~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~~~~~~~lvD~~~lydnn 362 (446)
.++++++||+++.+|...|.. ..-........+.++.+.+.....-.+++.+-|++
T Consensus 121 l~~~Ldv~pe~~~~R~~~r~~---~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~iid~~ 176 (186)
T PF02223_consen 121 LTFFLDVDPEEALKRIAKRGE---KDDEEEEDLEYLRRVREAYLELAKDPNNWVIIDAS 176 (186)
T ss_dssp EEEEEECCHHHHHHHHHHTSS---TTTTTTHHHHHHHHHHHHHHHHHHTTTTEEEEETT
T ss_pred EEEEEecCHHHHHHHHHcCCc---cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 347889999999999999987 22223334444556666665544434567676644
No 135
>PLN02459 probable adenylate kinase
Probab=98.00 E-value=0.00017 Score=71.96 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|..|++.|||||||||+++.|++.+ ++.+|++.++
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~-------~~~~is~gdl 63 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLL-------GVPHIATGDL 63 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh-------CCcEEeCcHH
Confidence 4557778999999999999999987 4789997665
No 136
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.98 E-value=0.00021 Score=72.16 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.+|+|+|++||||||+++.|...
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~~ 29 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALEDL 29 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHc
Confidence 3469999999999999999999643
No 137
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.98 E-value=0.00011 Score=79.51 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.+|.+.||+||||||+++.|++.++ +.++|.|.+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~-------~~~~d~g~~ 318 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLG-------LLYLDTGAM 318 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC-------CeEecCCce
Confidence 4678999999999999999999999984 789998877
No 138
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.95 E-value=0.00015 Score=70.28 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++.+|.+.|++||||||+++.|++.++ +.+++.|.+
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~-------~~~~~~~~~ 38 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLG-------FHYLDTGAM 38 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCchh
Confidence 468999999999999999999999984 788998876
No 139
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.93 E-value=0.00028 Score=76.07 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
-|++.|+|||||||+++.|++.++ +.+||.|.+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg-------~~~id~D~~i 35 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD-------LQFIDMDEEI 35 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-------CeEEECcHHH
Confidence 378999999999999999999874 7899999874
No 140
>PRK14529 adenylate kinase; Provisional
Probab=97.90 E-value=0.0001 Score=71.86 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|+|.|||||||||+++.|++.++ ..+|+..++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~-------~~~is~gdl 34 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD-------LAHIESGAI 34 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-------CCCcccchh
Confidence 78899999999999999999974 677875444
No 141
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.88 E-value=0.00054 Score=66.28 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
-.+|+|+|+.|+||||+++.|+++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999985
No 142
>PLN02199 shikimate kinase
Probab=97.86 E-value=0.00068 Score=68.83 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..-|++.|.+||||||+++.|++.++ +.+||+|.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg-------~~fIDtD~lI 137 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG-------YTFFDCDTLI 137 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-------CCEEehHHHH
Confidence 45789999999999999999999874 7899999863
No 143
>PLN02924 thymidylate kinase
Probab=97.85 E-value=0.00083 Score=65.11 Aligned_cols=95 Identities=21% Similarity=0.169 Sum_probs=51.2
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe-Cc--ccccchHHHHHHhcCCCCChhhhHHHHHHHHH
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-AD--AFKETDVIYRALSSKGHHDDMLQTAELVHQSS 213 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId-aD--~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea 213 (446)
.+++++.+|++.|..||||||.++.|++.+.. .+..+.++. ++ .. --..+++-+.... ..++. +....+...
T Consensus 11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~--~g~~v~~~~ep~~~~~-~g~~ir~~l~~~~-~~~~~-~~~llf~ad 85 (220)
T PLN02924 11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKG--LGVAAELWRFPDRTTS-VGQMISAYLSNKS-QLDDR-AIHLLFSAN 85 (220)
T ss_pred CcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCceeeeCCCCCCh-HHHHHHHHHhCCC-CCCHH-HHHHHHHHH
Confidence 34467899999999999999999999998752 122222222 21 11 0112333343211 11111 111111111
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCc
Q 013289 214 TDAASSLLVTALNEGRDVIMDGT 236 (446)
Q Consensus 214 ~~~a~~li~~aL~~G~sVViD~T 236 (446)
.......+..+++.|..||.|--
T Consensus 86 R~~~~~~I~pal~~g~vVI~DRy 108 (220)
T PLN02924 86 RWEKRSLMERKLKSGTTLVVDRY 108 (220)
T ss_pred HHHHHHHHHHHHHCCCEEEEccc
Confidence 11112458889999999999943
No 144
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.83 E-value=0.00059 Score=74.38 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|++.|.|||||||+++.|++.++ ..+||.|..
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~-------~~fiD~D~~ 40 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMR-------LPFADADVE 40 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhC-------CCEEEchHH
Confidence 4678889999999999999999985 679999976
No 145
>PRK13974 thymidylate kinase; Provisional
Probab=97.74 E-value=0.0038 Score=59.63 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+.+|++-|++||||||.++.|.+.+.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999998763
No 146
>PRK07933 thymidylate kinase; Validated
Probab=97.72 E-value=0.0025 Score=61.29 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.+|++-|.-||||||+++.|++.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999874
No 147
>PLN02840 tRNA dimethylallyltransferase
Probab=97.70 E-value=7.5e-05 Score=78.88 Aligned_cols=95 Identities=26% Similarity=0.406 Sum_probs=58.7
Q ss_pred ccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhc------------CCC
Q 013289 131 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS------------KGH 198 (446)
Q Consensus 131 ~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~------------~g~ 198 (446)
.|.|-++...++.+|+|+||+||||||++..|++.++ ..+|++|.+. +|+.+.- ..|
T Consensus 10 ~~~~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~-------~~iis~Ds~q----vYr~~~IgTaKpt~eE~~~V~H 78 (421)
T PLN02840 10 LSGSGASKTKKEKVIVISGPTGAGKSRLALELAKRLN-------GEIISADSVQ----VYRGLDVGSAKPSLSERKEVPH 78 (421)
T ss_pred cCCCccccccCCeEEEEECCCCCCHHHHHHHHHHHCC-------CCeEeccccc----eecceeEEcCCCCHHHHcCCCe
Confidence 4455556667778999999999999999999999973 5689998752 2333321 001
Q ss_pred CC-hhhh-HHHHHHHHHHHHHHHHHHHHHhCCCc-EEEeCc
Q 013289 199 HD-DMLQ-TAELVHQSSTDAASSLLVTALNEGRD-VIMDGT 236 (446)
Q Consensus 199 ~~-d~~~-~ae~v~~ea~~~a~~li~~aL~~G~s-VViD~T 236 (446)
.. +... ..++.-......+...++..++.|+. ||+-||
T Consensus 79 hlidil~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGT 119 (421)
T PLN02840 79 HLIDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGT 119 (421)
T ss_pred EeEeecCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 00 0000 00111122345666788888888884 555566
No 148
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.0026 Score=61.39 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=50.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe-CcccccchHHHHHHhcCCCCChhhhHHHHHHHHH-HHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAAS 218 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId-aD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea-~~~a~ 218 (446)
++.+|.+-|.=||||||.++.|.+.+. +.+-.+++.. |..-.-...++..+.......++. +..+..... .....
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~--~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~-~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLE--ERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPK-AEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHH-HHHHHHHHHHHHHHH
Confidence 578999999999999999999988763 1111222221 111000122333333210000111 111111111 23356
Q ss_pred HHHHHHHhCCCcEEEeCc
Q 013289 219 SLLVTALNEGRDVIMDGT 236 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~T 236 (446)
..+..++..|.-||.|--
T Consensus 79 ~~i~pal~~g~vVI~DRy 96 (208)
T COG0125 79 EVIKPALKEGKVVICDRY 96 (208)
T ss_pred HHHHHhhcCCCEEEECCc
Confidence 688899999999999843
No 149
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.67 E-value=0.00053 Score=76.96 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|.|.|||||||||+++.|++.++ +.++|...+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~-------~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG-------YAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEeecCcE
Confidence 689999999999999999999984 678888776
No 150
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.64 E-value=0.00058 Score=72.50 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.+|+|+|++||||||++..|+..+ ...+..+.+|++|.+|.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l--~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY--QRKGFKPCLVCADTFRA 141 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEcCcccch
Confidence 568999999999999999999998754 22334688999999874
No 151
>PLN02772 guanylate kinase
Probab=97.64 E-value=0.00026 Score=74.31 Aligned_cols=85 Identities=19% Similarity=0.328 Sum_probs=52.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc--c--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ 204 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~--~--------------~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~ 204 (446)
...+++++||+||||||+.+.|.+.+. + +..+.++.+++.++|. +.+.. + .+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe------~~i~~-g---~FlE 203 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVME------KEIKD-G---KFLE 203 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHH------HHHHh-C---ccce
Confidence 446999999999999999999987642 1 0011224444434431 11111 1 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCc
Q 013289 205 TAELVHQSSTDAASSLLVTALNEGRDVIMDGT 236 (446)
Q Consensus 205 ~ae~v~~ea~~~a~~li~~aL~~G~sVViD~T 236 (446)
.+++ |...|....+.++..+++|+.+|+|-.
T Consensus 204 ~~e~-~Gn~YGTsk~~V~~vl~~Gk~vILdLD 234 (398)
T PLN02772 204 FASV-HGNLYGTSIEAVEVVTDSGKRCILDID 234 (398)
T ss_pred eeee-cCccccccHHHHHHHHHhCCcEEEeCC
Confidence 2222 444556666788889999999999954
No 152
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.62 E-value=0.00064 Score=65.99 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+|-|=||+||||||+++.|+++++ +.++|+..+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg-------~~yldTGam 38 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLG-------FHYLDTGAM 38 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhC-------CCeecccHH
Confidence 47899999999999999999999985 789998766
No 153
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.60 E-value=8.4e-05 Score=75.05 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc-ccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~-~~~~~~~~vvIdaD~ir~ 185 (446)
+.|.+|.|+|+|||||||+++.|...+. | ...+.+.+|+.|.+-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~-~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRW-PEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc-CCCCceEEEecccccc
Confidence 6799999999999999999988765542 1 1123578889998853
No 154
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.60 E-value=0.00046 Score=64.37 Aligned_cols=130 Identities=19% Similarity=0.220 Sum_probs=81.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCC--CC----hhh-----hHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH--HD----DML-----QTAEL 208 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~--~~----d~~-----~~ae~ 208 (446)
....++++-|++-||||++|..+..-. .+.+.+|..|.|-+.-|-.......++ +. |.+ ....
T Consensus 21 ~~griVlLNG~~saGKSSiA~A~Q~~~-----a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gp- 94 (205)
T COG3896 21 PEGRIVLLNGGSSAGKSSIALAFQDLA-----AEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGP- 94 (205)
T ss_pred CCceEEEecCCCccchhHHHHHHHHHh-----hcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechh-
Confidence 456899999999999999999987754 234677888877443332222222221 10 000 0011
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhH
Q 013289 209 VHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQ 288 (446)
Q Consensus 209 v~~ea~~~a~~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~ 288 (446)
+.+.+..-...-+......|-|+|.|.....+.++-.-++
T Consensus 95 i~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r---------------------------------------- 134 (205)
T COG3896 95 ILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLR---------------------------------------- 134 (205)
T ss_pred HHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHH----------------------------------------
Confidence 1222323333356667788999999998877544322111
Q ss_pred hhhhhhhhcCCCcEEEEEEEeCCHHHHHHHHHHhh
Q 013289 289 QKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 289 ~~~~~~~~~~~gY~I~lv~V~~d~elav~Rv~~R~ 323 (446)
.-.|+++.+|+|.||.|+-.+|-.+|.
T Consensus 135 --------~l~g~~v~~VGV~~p~E~~~~Re~rr~ 161 (205)
T COG3896 135 --------VLEGCRVWMVGVHVPDEEGARRELRRG 161 (205)
T ss_pred --------HHhCCceEEEEeeccHHHHHHHHhhcC
Confidence 235678999999999999887777764
No 155
>PLN02842 nucleotide kinase
Probab=97.60 E-value=0.0013 Score=71.07 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=26.9
Q ss_pred EEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 146 LMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 146 llaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|.|+|||||||+++.|++.+ +..+|+++++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~l-------g~~hIs~gdL 31 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKF-------GLVHISTGDL 31 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHh-------CCCEEEccHH
Confidence 478999999999999999987 4788987765
No 156
>PRK05439 pantothenate kinase; Provisional
Probab=97.57 E-value=0.0001 Score=75.13 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
...|.+|.|+|++||||||+++.|...+.-...+..+.+|..|.|-
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 3679999999999999999999998865300123457899999984
No 157
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00067 Score=62.93 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
...-+|.|+|.+||||||+|-.|.+.+. ..+.-..++|.|.+|
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~--qrgkl~Y~LDGDNvR 71 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALL--QRGKLTYILDGDNVR 71 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHH--hcCceEEEecCcccc
Confidence 4578999999999999999988777653 233457789999984
No 158
>PLN02748 tRNA dimethylallyltransferase
Probab=97.51 E-value=0.0002 Score=76.70 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=54.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHh------------cCCCCC-hhhh-H
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS------------SKGHHD-DMLQ-T 205 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~------------~~g~~~-d~~~-~ 205 (446)
.++.+|+|.||+||||||++..|+..+ +..+||+|..- +|++|. ...|+. +... .
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~-------~~eii~~DsmQ----VYrgLdIgTaKpt~eE~~~VpHHLid~v~p~ 88 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHF-------PVEIINADSMQ----VYSGLDVLTNKVPLHEQKGVPHHLLGVISPS 88 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc-------CeeEEcCchhe----eeCCcchhcCCCCHHHHcCCCCeeEeecCCC
Confidence 557799999999999999999999986 47899999641 244331 111110 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-cEEEeCcC
Q 013289 206 AELVHQSSTDAASSLLVTALNEGR-DVIMDGTL 237 (446)
Q Consensus 206 ae~v~~ea~~~a~~li~~aL~~G~-sVViD~T~ 237 (446)
.++.-......+...++.....|+ .||+-||.
T Consensus 89 e~ysv~~F~~~A~~~I~~I~~rgk~PIlVGGTg 121 (468)
T PLN02748 89 VEFTAKDFRDHAVPLIEEILSRNGLPVIVGGTN 121 (468)
T ss_pred CcCcHHHHHHHHHHHHHHHHhcCCCeEEEcChH
Confidence 111112234556668888888887 56666664
No 159
>PRK10867 signal recognition particle protein; Provisional
Probab=97.49 E-value=0.0014 Score=69.69 Aligned_cols=45 Identities=27% Similarity=0.443 Sum_probs=35.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC-CCCeEEEeCcccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKET 186 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~-~~~~vvIdaD~ir~~ 186 (446)
..|.+|+++|++||||||++..|+..+. .. +..+.+|++|.+|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEccccchH
Confidence 5699999999999999998888877542 22 346789999999753
No 160
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=0.0004 Score=59.32 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|++.||||+||||+++.+++.++ .....++...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----ccccccccccc
Confidence 68999999999999999999974 34556666554
No 161
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.48 E-value=0.00012 Score=70.82 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+|.|+|+|||||||+++.|+..+.-...+..+.+|+.|.+-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 57899999999999999998876200023457889999884
No 162
>PLN02165 adenylate isopentenyltransferase
Probab=97.47 E-value=0.00022 Score=73.33 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.+++|.||+||||||++..|+..+ +..+||+|.+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l-------~~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRF-------PSEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHc-------CCceecCChh
Confidence 45689999999999999999999987 3579999987
No 163
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.45 E-value=0.00063 Score=72.27 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=36.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
...|.+++++|++||||||++..|+..+. ...+..+.+|++|.+|.
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~-~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLK-KKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCeEEEEeccccch
Confidence 35699999999999999999988876631 11234688999999875
No 164
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.44 E-value=0.00026 Score=71.47 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=52.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC-CCCC------------hhhhH-HHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHD------------DMLQT-AELV 209 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~-g~~~------------d~~~~-ae~v 209 (446)
+|+|+||+||||||++..|++.+ +..+|++|.+ .+|++|.-. ..|. +.... ..+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~-------~~~iis~Ds~----qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~ 69 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKL-------NAEIISVDSM----QIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYS 69 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhC-------CCcEEEechh----heeeeccccCCCCCHHHHcCccEEEEEEechhheEc
Confidence 48999999999999999999986 4678999986 235554321 0010 00000 1111
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEE-eCcC
Q 013289 210 HQSSTDAASSLLVTALNEGRDVIM-DGTL 237 (446)
Q Consensus 210 ~~ea~~~a~~li~~aL~~G~sVVi-D~T~ 237 (446)
-......+...+....+.|+..|+ -||.
T Consensus 70 v~~f~~~a~~~i~~~~~~g~~pi~vGGTg 98 (287)
T TIGR00174 70 AADFQTLALNAIADITARGKIPLLVGGTG 98 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEcCcH
Confidence 123356677788899999986555 4553
No 165
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.41 E-value=0.00057 Score=68.26 Aligned_cols=44 Identities=20% Similarity=0.447 Sum_probs=35.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.++++.|++|+||||++..|+..+ ...+....+|++|.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCCCCH
Confidence 558899999999999999999988765 23334678899998864
No 166
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.40 E-value=6.6e-05 Score=67.15 Aligned_cols=23 Identities=43% Similarity=0.767 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l 166 (446)
+++|.||+||||||+++.|++.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47889999999999999999874
No 167
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.39 E-value=0.0054 Score=61.88 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+++|+|.+||||||..+.|..-
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~ 24 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDL 24 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhc
Confidence 48999999999999999998654
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.39 E-value=0.00021 Score=59.59 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+..+++.||||+||||+++.++..+.. ......+++++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEcc
Confidence 467899999999999999999998751 11147888887664
No 169
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.38 E-value=0.00078 Score=61.59 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
++++.|++||||||++..++..+ ...+....+|+.|.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~--~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL--KKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEcCCCCh
Confidence 68899999999999999988764 23334678899998864
No 170
>PRK14974 cell division protein FtsY; Provisional
Probab=97.37 E-value=0.0012 Score=68.05 Aligned_cols=44 Identities=23% Similarity=0.393 Sum_probs=34.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.++++.|+||+||||++..|+..+. ..+..+.++++|.+|.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGFSVVIAAGDTFRA 181 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcCcH
Confidence 5699999999999999998888876542 2234577899998864
No 171
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.35 E-value=0.00025 Score=56.10 Aligned_cols=23 Identities=39% Similarity=0.705 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l 166 (446)
+|+++|+|||||||+++.|.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999884
No 172
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.31 E-value=0.002 Score=60.27 Aligned_cols=77 Identities=17% Similarity=0.066 Sum_probs=50.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA 224 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~a 224 (446)
++=.+.+|+||||++..|..-+| .+-+|.-|.|... .. ..+ +...+..+
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg------~wgHvQnDnI~~k--------------~~---~~f--------~~~~l~~L 50 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFG------EWGHVQNDNITGK--------------RK---PKF--------IKAVLELL 50 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcC------CCCccccCCCCCC--------------CH---HHH--------HHHHHHHH
Confidence 45567889999999999998886 1358998998421 00 011 11123222
Q ss_pred HhCCC-cEEEeCcCCCHHHHHHHHHHHhh
Q 013289 225 LNEGR-DVIMDGTLSWVPFVEQTIAMARN 252 (446)
Q Consensus 225 L~~G~-sVViD~T~s~~~~re~lia~Ar~ 252 (446)
-+.+. -|+.|-.......|++++..++.
T Consensus 51 ~~~~~~vViaDRNNh~~reR~ql~~~~~~ 79 (168)
T PF08303_consen 51 AKDTHPVVIADRNNHQKRERKQLFEDVSQ 79 (168)
T ss_pred hhCCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 23444 55668888888899999887655
No 173
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.30 E-value=0.0097 Score=60.07 Aligned_cols=29 Identities=17% Similarity=0.502 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 168 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~ 168 (446)
....+|.+-|+.|||||++|++|++++|+
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf 97 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGF 97 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCC
Confidence 45789999999999999999999999874
No 174
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.30 E-value=0.0016 Score=66.67 Aligned_cols=44 Identities=20% Similarity=0.462 Sum_probs=35.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.++++.|||||||||++..|+..+- ..+..+.++++|.++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRA 155 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccch
Confidence 5689999999999999999999987652 2334678899998763
No 175
>PRK13976 thymidylate kinase; Provisional
Probab=97.27 E-value=0.0067 Score=58.33 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCC-C-CCeEEE-eCcccccchHHHHHHhcCCCCChhhhHHHHHHHH-HHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGA-A-TNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQS-STDAAS 218 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~-~-~~~vvI-daD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~e-a~~~a~ 218 (446)
.+|++-|.-||||||.++.|++.+. .. + ..+.+. .+..-.-...+++.+...... ++.. .....-. -.....
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~--~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~-~~~~-~~llf~a~R~~~~~ 76 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLS--DIYGENNVVLTREPGGTSFNELVRGLLLSLKNL-DKIS-ELLLFIAMRREHFV 76 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCC-CHHH-HHHHHHHHHHHHHH
Confidence 4799999999999999999998863 11 1 122222 121100112344444331101 1111 1110110 112234
Q ss_pred HHHHHHHhCCCcEEEeCcC
Q 013289 219 SLLVTALNEGRDVIMDGTL 237 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~T~ 237 (446)
..+..+++.|..||.|--+
T Consensus 77 ~~I~p~l~~G~~VI~DRy~ 95 (209)
T PRK13976 77 KVILPALLQGKIVICDRFI 95 (209)
T ss_pred HHHHHHHHCCCEEEECCCc
Confidence 4688899999999999443
No 176
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.0079 Score=56.68 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+++++|-||+||||+.+...+.+- ...++|-.++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~------~~~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELV------KHKIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHh------hceeeeHhHH
Confidence 68999999999999999999888761 3567775554
No 177
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.0009 Score=70.75 Aligned_cols=90 Identities=24% Similarity=0.382 Sum_probs=58.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHH---hcC-CCCChhhhHHHHHHHHHH
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL---SSK-GHHDDMLQTAELVHQSST 214 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L---~~~-g~~~d~~~~ae~v~~ea~ 214 (446)
.+.|.+|+|+|.-||||||.+..|+..+ ...+....+|.+|.+|.. -+.+| ... +.+ ...+-......
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~l--kk~~~kvllVaaD~~RpA--A~eQL~~La~q~~v~----~f~~~~~~~Pv 168 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYL--KKKGKKVLLVAADTYRPA--AIEQLKQLAEQVGVP----FFGSGTEKDPV 168 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHH--HHcCCceEEEecccCChH--HHHHHHHHHHHcCCc----eecCCCCCCHH
Confidence 4679999999999999999998888765 234567889999999843 12222 221 111 00111122234
Q ss_pred HHHHHHHHHHHhCCCcEEE-eCc
Q 013289 215 DAASSLLVTALNEGRDVIM-DGT 236 (446)
Q Consensus 215 ~~a~~li~~aL~~G~sVVi-D~T 236 (446)
.++.+-++.+-.++.+||+ ||.
T Consensus 169 ~Iak~al~~ak~~~~DvvIvDTA 191 (451)
T COG0541 169 EIAKAALEKAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC
Confidence 5677788888888988755 643
No 178
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.23 E-value=0.00039 Score=66.18 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
|.+|++.||+|+||||.+..|+..+.. .+....+|++|.+|.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCc
Confidence 889999999999999999998887642 255789999999973
No 179
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0032 Score=64.51 Aligned_cols=138 Identities=19% Similarity=0.297 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC----------CCC----ChhhhHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------GHH----DDMLQTAE 207 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~----------g~~----~d~~~~ae 207 (446)
-+++++.|+.|||||-++-.|+.++ +..+||+|-+. +|+++.-. |.| +......+
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf-------~~EIINsDkmQ----vYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e 75 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRF-------PGEIINSDKMQ----VYKGLDIVTNKITLQERKGVPHHLLGHLHPEAE 75 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhC-------Cceeeccccee----eecCcccccccCChhhcCCCChHHhCcCChHhh
Confidence 4799999999999999999999997 47899999872 34443210 111 00011124
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC-cEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchh
Q 013289 208 LVHQSSTDAASSLLVTALNEGR-DVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEED 286 (446)
Q Consensus 208 ~v~~ea~~~a~~li~~aL~~G~-sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~ 286 (446)
++..+....+...++...+.|+ ++|.-||++- ...++.. +..| + ..|+...
T Consensus 76 ~t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~y---i~al~~~---------~~d~--~-----------~dp~~~~--- 127 (348)
T KOG1384|consen 76 YTAGEFEDDASRAIEEIHSRGKLPIVVGGSNSY---LQALLSK---------RFDP--K-----------IDPFSSN--- 127 (348)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCEEeCCchhh---HHHHhhc---------CCCc--c-----------cCccccc---
Confidence 4445556677778999999888 6666687763 3333221 0001 0 0011110
Q ss_pred hHhhhhhhhhcCCCcEEEEEEEeCCHHHHHHHHHHhh
Q 013289 287 YQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 287 ~~~~~~~~~~~~~gY~I~lv~V~~d~elav~Rv~~R~ 323 (446)
.+.......|.-=+++|+++..+.-.|+-.|+
T Consensus 128 -----~g~~pS~lryd~c~lWlda~~~VL~~~l~~RV 159 (348)
T KOG1384|consen 128 -----TGSIPSELRYDCCFLWLDADQAVLFERLDKRV 159 (348)
T ss_pred -----CCCCCcccccceEEEEEecchHHHHHHHHHHH
Confidence 00011233577778999999999999999997
No 180
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.22 E-value=0.001 Score=62.13 Aligned_cols=132 Identities=16% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe-CcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId-aD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
....++++|++||||||+.+.|...+. +..+.+.++ ++++.-.....-.+... +..... ........
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied~~E~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~ 91 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIEDTAELQLPHPNWVRLVTR--PGNVEG-------SGEVTMAD 91 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECCccccCCCCCCEEEEEEe--cCCCCC-------CCccCHHH
Confidence 467899999999999999999987652 223444442 22221100000000000 000000 00011233
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.+..++..+-++|+-+.+..++-.. +++.+. .
T Consensus 92 ~l~~~lR~~pd~i~igEir~~ea~~-~~~a~~-----------------------------------------------t 123 (186)
T cd01130 92 LLRSALRMRPDRIIVGEVRGGEALD-LLQAMN-----------------------------------------------T 123 (186)
T ss_pred HHHHHhccCCCEEEEEccCcHHHHH-HHHHHh-----------------------------------------------c
Confidence 6677888899999999888865432 333222 2
Q ss_pred CcEEEEEEEe-CCHHHHHHHHHHhhhhcCcccch
Q 013289 300 PYRIELVGVV-CDAYLAVVRGIRRAIMMKRAVRV 332 (446)
Q Consensus 300 gY~I~lv~V~-~d~elav~Rv~~R~~~gGR~Vpv 332 (446)
|+.-.+.-++ .++..++.|...+...+++.++.
T Consensus 124 Gh~g~~~T~Ha~s~~~~~~Rl~~~~~~~~~~~~~ 157 (186)
T cd01130 124 GHPGGMTTIHANSAEEALTRLELLPSNVPLGRPL 157 (186)
T ss_pred CCCCceeeecCCCHHHHHHHHHHHHhhcCccHHH
Confidence 2221223333 37899999999999888876654
No 181
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.0023 Score=59.28 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
|+++|-||+||||++.+|++.+ +..+|+.-++.
T Consensus 10 ILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~v 42 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLV 42 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHH
Confidence 6789999999999999999886 47888865553
No 182
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0012 Score=67.39 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC-CCCC------------hhhh-HH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHD------------DMLQ-TA 206 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~-g~~~------------d~~~-~a 206 (446)
.|.+++|+||.|||||-++-.|++++ +..+||.|.. .+|++|.-. ..|. |... +.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~-------~~eIIs~DSm----QvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e 70 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRL-------GGEIISLDSM----QVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE 70 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHc-------CCcEEecchh----hhcCCCcccCCCCCHHHHcCCCEEEecccCccc
Confidence 47899999999999999999999997 4789999976 345554321 1110 0000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc-EEEeCcC
Q 013289 207 ELVHQSSTDAASSLLVTALNEGRD-VIMDGTL 237 (446)
Q Consensus 207 e~v~~ea~~~a~~li~~aL~~G~s-VViD~T~ 237 (446)
.+.-....+.+...+......|+- +++-||.
T Consensus 71 ~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTg 102 (308)
T COG0324 71 SYSAAEFQRDALAAIDDILARGKLPILVGGTG 102 (308)
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCcEEEccHH
Confidence 111123345566788889999975 5555663
No 183
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.10 E-value=0.0094 Score=59.91 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=81.9
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHHHhhc-ccCCCCCeEEEeCcccccchHH--HHHH-hcCCCCChhhhHHHHHHHHH
Q 013289 138 SERSPVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEADAFKETDVI--YRAL-SSKGHHDDMLQTAELVHQSS 213 (446)
Q Consensus 138 ~~~~P~LIllaG~~GSGKSTvAr~La~~l~-~~~~~~~~vvIdaD~ir~~d~i--rk~L-~~~g~~~d~~~~ae~v~~ea 213 (446)
..+.|.+|.++|++|+||||+++.+...+- |.+. +.+.+|-.|=|--.+.. .+.+ ...|.|....- ...
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~-~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~------~~l 150 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPES-PKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDV------AAL 150 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCC-CceEEEeccccccCHhHhhhccccccCCCCccccH------HHH
Confidence 347799999999999999999998876542 3222 23667777776322111 1122 22244421110 001
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecC--CcchhhhhhhhhhhcchhhHhhh
Q 013289 214 TDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNE--DGTVIENYWEQVKEGEEDYQQKE 291 (446)
Q Consensus 214 ~~~a~~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~--~g~~~E~yw~~v~~~~~~~~~~~ 291 (446)
. .....+++|...|.==++++..+ ...-.+|.|.+ |=-++|+.|.-.....
T Consensus 151 l-----~fl~~vK~~~~~v~aPvysh~~y---------------D~vpd~~~v~~~pdIlI~EG~nvLq~~~p------- 203 (283)
T COG1072 151 L-----RFLSDVKAGKPDVFAPVYSHLIY---------------DPVPDAFQVVPQPDILIVEGNNVLQDGEP------- 203 (283)
T ss_pred H-----HHHHHHhcCCCcccccccccccc---------------ccCCCceeecCCCCEEEEechhhhcCCCc-------
Confidence 1 23335555666433333333111 01111222211 1235577666544320
Q ss_pred hhhhhcCCCcEEEEEEEeCCHHHHHHHHHHhhhhcCccc
Q 013289 292 NRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV 330 (446)
Q Consensus 292 ~~~~~~~~gY~I~lv~V~~d~elav~Rv~~R~~~gGR~V 330 (446)
. ..-.++.---++|+++.+..-+|.+.|....|...
T Consensus 204 --~-~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~~a 239 (283)
T COG1072 204 --W-LFLSDFFDFSIYVDADEELLEERYIERFLKFGLTA 239 (283)
T ss_pred --c-ccccccceEEEEecCCHHHHHHHHHHHHHhcccch
Confidence 0 11223322348999999999999999998766543
No 184
>PHA03132 thymidine kinase; Provisional
Probab=97.06 E-value=0.022 Score=62.77 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+|.|-|..||||||+++.|++.+
T Consensus 258 ~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 258 CFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999875
No 185
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.05 E-value=0.0011 Score=68.98 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 109 VFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 109 ~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+...|++-++..+. .......+++++|||||||||+++.|+..+.
T Consensus 59 ~i~~lv~~l~~~a~--------------g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 59 AIERFVNYFKSAAQ--------------GLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred HHHHHHHHHHHHHh--------------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46667776666653 1113458899999999999999999999874
No 186
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.03 E-value=0.0012 Score=70.44 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=36.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.+++++|++|+||||++..|+..+. ..+....+|++|.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCH
Confidence 4699999999999999999999987652 3334688899999875
No 187
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.02 E-value=0.00086 Score=65.27 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.++++.|+||+||||+|+.+.. ...+++.|..
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~---------~~~~~~~d~~ 44 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG---------KTLVLSFDMS 44 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC---------CCEEEecccc
Confidence 5588999999999999999998853 3678998885
No 188
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.01 E-value=0.0019 Score=65.73 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC-CCCC------------hhhh-HH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHD------------DMLQ-TA 206 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~-g~~~------------d~~~-~a 206 (446)
.+.+|+|.||+|||||.+|-.|+++. ..+||+|.. .+|++|.=. ..|. |... ..
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~--------~eIIsaDS~----QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e 70 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGK--------AEIINVDSI----QVYKEFDIASCKPSKELRKHIKHHLVDFLEPIK 70 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC--------CcEEeccHH----HHHCCCceecCCCCHHHHcCCCeeeeeccCCCC
Confidence 45699999999999999999999883 479999987 356665311 0010 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc-EEEeCcC
Q 013289 207 ELVHQSSTDAASSLLVTALNEGRD-VIMDGTL 237 (446)
Q Consensus 207 e~v~~ea~~~a~~li~~aL~~G~s-VViD~T~ 237 (446)
++.-......+...++.....|+. ||+-||.
T Consensus 71 ~~sv~~f~~~a~~~i~~i~~~gk~PilvGGTg 102 (300)
T PRK14729 71 EYNLGIFYKEALKIIKELRQQKKIPIFVGGSA 102 (300)
T ss_pred ceeHHHHHHHHHHHHHHHHHCCCCEEEEeCch
Confidence 111112234566677777788875 5555663
No 189
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.93 E-value=0.01 Score=57.90 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
.++++.||+|+|||.++-.++++++ ..+|+.|-+-
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g-------~pvI~~Driq 36 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTG-------APVISLDRIQ 36 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhC-------CCEEEeccee
Confidence 5899999999999999999999984 6899999884
No 190
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.92 E-value=0.0088 Score=61.55 Aligned_cols=90 Identities=19% Similarity=0.284 Sum_probs=53.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccc----hHHHHHHhcCCCCChhhhHHHHHHHHHH
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET----DVIYRALSSKGHHDDMLQTAELVHQSST 214 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~----d~irk~L~~~g~~~d~~~~ae~v~~ea~ 214 (446)
..+|.+|++.|.||+||||-...|+..+- ..+..+.+.-+|.||.. ...+.+-.+. + .... .. .....
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~--~~g~~VllaA~DTFRAaAiEQL~~w~er~gv--~--vI~~-~~-G~DpA 207 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLK--QQGKSVLLAAGDTFRAAAIEQLEVWGERLGV--P--VISG-KE-GADPA 207 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHH--HCCCeEEEEecchHHHHHHHHHHHHHHHhCC--e--EEcc-CC-CCCcH
Confidence 35699999999999999999888887652 33445667778999742 1111111110 0 0000 00 01112
Q ss_pred HHHHHHHHHHHhCCCcEEEeCc
Q 013289 215 DAASSLLVTALNEGRDVIMDGT 236 (446)
Q Consensus 215 ~~a~~li~~aL~~G~sVViD~T 236 (446)
..+..-++.+...|.+||+=.|
T Consensus 208 aVafDAi~~Akar~~DvvliDT 229 (340)
T COG0552 208 AVAFDAIQAAKARGIDVVLIDT 229 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC
Confidence 2445578889999999877433
No 191
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.91 E-value=0.0013 Score=69.77 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..|.+|.|+|++||||||+++.|...+. ..+.....|+-|++-
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~--~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFR--VTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc--ccCCceEEEEECCcc
Confidence 4799999999999999999999976542 112347788888874
No 192
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0051 Score=65.34 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=34.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.|.++++.||+||||||++..|+..+. ...+..+.+++.|.++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~-~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYF-LHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HhcCCeEEEecccchhh
Confidence 478999999999999999999987542 12234578899999864
No 193
>PLN02796 D-glycerate 3-kinase
Probab=96.88 E-value=0.0014 Score=67.88 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..|.++.|+|++||||||+++.|...+. ..+.....|+.|.+-
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~--~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFN--ATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhc--ccCCceeEEEECCcc
Confidence 4689999999999999999999988763 111236678888774
No 194
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.84 E-value=0.0013 Score=59.36 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 168 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~ 168 (446)
+.+.++++.|++||||||+++.+++.+++
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 44679999999999999999999999864
No 195
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.82 E-value=0.0064 Score=55.09 Aligned_cols=21 Identities=24% Similarity=0.623 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~ 165 (446)
|+|+|++|+||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 689999999999999999987
No 196
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.82 E-value=0.0012 Score=67.93 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=33.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
...|.+|.++|+|||||||++..|...+. ..+..+.+|+.|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~--~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLI--EQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeCC
Confidence 46789999999999999999998877652 2234677888775
No 197
>PRK13768 GTPase; Provisional
Probab=96.75 E-value=0.0019 Score=63.68 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++.++++.|++||||||++..++..+. ..+..+.+||.|.-
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~--~~g~~v~~i~~D~~ 41 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLE--EQGYDVAIVNLDPA 41 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHH--hcCCceEEEECCCc
Confidence 468999999999999999988877642 23456788887743
No 198
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0019 Score=60.88 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+|+++|.||.||||+++.|. .++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg 24 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG 24 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC
Confidence 68999999999999999999 665
No 199
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.74 E-value=0.002 Score=64.60 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..|.++++.||+||||||++..|+..+-....+..+.+|+.|.++
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 457899999999999999999988765211012467889999875
No 200
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.74 E-value=0.0054 Score=60.22 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=48.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCC-CCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV 222 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~-~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~ 222 (446)
|++++|.|.|||||.|++|...+. +.+ ...+.|--|+- + +.+++ ..|..............+.++
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~--~~~~K~~v~ii~des---------l-g~~~n--s~y~~s~~EK~lRg~L~S~v~ 68 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALK--ERGTKQSVRIIDDES---------L-GIEKN--SNYGDSQAEKALRGKLRSAVD 68 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHH--hhcccceEEEechhh---------c-CCCCc--ccccccHHHHHHHHHHHHHHH
Confidence 789999999999999999988763 222 12455543332 1 11111 011001101122344556778
Q ss_pred HHHhCCCcEEEeCcCC
Q 013289 223 TALNEGRDVIMDGTLS 238 (446)
Q Consensus 223 ~aL~~G~sVViD~T~s 238 (446)
+-+..|.-||+|+-..
T Consensus 69 R~Lsk~~iVI~DslNy 84 (281)
T KOG3062|consen 69 RSLSKGDIVIVDSLNY 84 (281)
T ss_pred hhcccCcEEEEecccc
Confidence 8899999999998654
No 201
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.74 E-value=0.0016 Score=56.93 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++++.|+||+||||++..++.... ..+..+++++.+.-
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcc
Confidence 478999999999999999987642 23345777776543
No 202
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.69 E-value=0.0023 Score=54.09 Aligned_cols=41 Identities=29% Similarity=0.444 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+..+++.|++|+||||+++.++..+. .......+++...+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhh
Confidence 356788999999999999999998752 12234566665544
No 203
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0056 Score=64.34 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=36.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhccc--CCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~--~~~~~~vvIdaD~ir~ 185 (446)
..|.++++.||+|+||||.+..|+..+... ..+..+.+|++|.++.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 458899999999999999999998765211 1234688899999864
No 204
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.0022 Score=67.82 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..|.+|++.||+||||||++..|+..+. ..+....+|++|.+|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcc
Confidence 4578999999999999999999987652 334467899999986
No 205
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.63 E-value=0.0018 Score=74.16 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.|.||+||||||+++.|++.++ +.+||.+.+
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~-------~~~~~~g~~ 68 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG-------AQCLNTGSF 68 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-------CcEEeHHHH
Confidence 5899999999999999999999984 679998876
No 206
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.60 E-value=0.0032 Score=59.93 Aligned_cols=40 Identities=18% Similarity=0.429 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
|..+.++|++||||||+.+.+...+. +..+..++..|...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~---~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR---QKYQLAVITNDIYT 40 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC---cCCcEEEEeCCcCC
Confidence 67899999999999999999988753 12345667666553
No 207
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.58 E-value=0.0033 Score=59.61 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....++++.|+|||||||++.+++.... ..+..+.+|+++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~ 57 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEG 57 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCC
Confidence 4578999999999999999999987642 2345678898764
No 208
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.58 E-value=0.0032 Score=63.44 Aligned_cols=49 Identities=22% Similarity=0.152 Sum_probs=34.9
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+......+.++.+.|+|||||||++..+...+. ..+..+.+|+.|.-
T Consensus 25 ~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~--~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 25 DRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR--RRGLKVAVIAVDPS 73 (300)
T ss_pred HhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCC
Confidence 33333445688999999999999999999877542 22345778888844
No 209
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.57 E-value=0.0017 Score=64.67 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=57.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEE--EeC-----------cccccchHHHHHHhcCCCCChhhh-H
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV--VEA-----------DAFKETDVIYRALSSKGHHDDMLQ-T 205 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vv--Ida-----------D~ir~~d~irk~L~~~g~~~d~~~-~ 205 (446)
....+|.++||||+||||+...|...+- +.+....+ ||| |-+|- ..++. .++-+.. .
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~--~~g~~VaVlAVDPSSp~tGGAlLGDRiRM-----~~~~~--d~~vfIRS~ 97 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELR--ERGKRVAVLAVDPSSPFTGGALLGDRIRM-----QELSR--DPGVFIRSM 97 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHH--HTT--EEEEEE-GGGGCC---SS--GGGC-----HHHHT--STTEEEEEE
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHh--hcCCceEEEEECCCCCCCCCcccccHHHh-----cCcCC--CCCEEEeec
Confidence 4578999999999999999999887652 22334444 443 22221 11211 1111100 0
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhCCCcEE-EeCcCCCHHHHHHHHHHHhhcccccccccccc
Q 013289 206 AEL-VHQSSTDAASSLLVTALNEGRDVI-MDGTLSWVPFVEQTIAMARNVHKSRYRMGVGY 264 (446)
Q Consensus 206 ae~-v~~ea~~~a~~li~~aL~~G~sVV-iD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY 264 (446)
+.. ...-........+.-+-..|.++| +||+--.....+ .+.-++-..+.+-||+
T Consensus 98 atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~----I~~~aD~~v~v~~Pg~ 154 (266)
T PF03308_consen 98 ATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD----IADMADTVVLVLVPGL 154 (266)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH----HHTTSSEEEEEEESST
T ss_pred CcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH----HHHhcCeEEEEecCCC
Confidence 000 011112333445566666899875 588876665544 3444566777777776
No 210
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.57 E-value=0.0027 Score=63.26 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=36.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+...-+...++.+-|||||||||+.+.++.-+ .+..|.+.+|...+.
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l---~p~~G~V~l~g~~i~ 67 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLL---KPKSGEVLLDGKDIA 67 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCCchh
Confidence 33344567899999999999999999998754 345678999887664
No 211
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0082 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+..+|.+.||+||||-|+.......+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l 29 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARL 29 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHh
Confidence 57899999999999999998887775
No 212
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.53 E-value=0.0023 Score=50.55 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+.++.|+|||||||+..++.--+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999886543
No 213
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.53 E-value=0.003 Score=61.69 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=35.8
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.-+...-.+.-++.+.|||||||||+.+.+..- ..+..|.+.|+.+.+
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~ 66 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDV 66 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEec
Confidence 334444466889999999999999999998642 345667888887544
No 214
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.041 Score=62.47 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
.+.+|++.||+|+||||.+..|+..+-.........+|+.|.++
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 47899999999999999999998764111111357789999987
No 215
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.50 E-value=0.0026 Score=59.30 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
++++.|+|||||||+|..++..++ ....+|.+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCC
Confidence 689999999999999999998853 2466777643
No 216
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.50 E-value=0.0025 Score=62.54 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=23.8
Q ss_pred EEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 147 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 147 laG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+.||+||||||+++.+.+.+. ..+-...+||.|-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~--~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE--SNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT--TT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHH--hccCCceEEEcch
Confidence 579999999999999988653 3345678888774
No 217
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.49 E-value=0.0089 Score=64.53 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
.+.++++.||||+||||.+..|+..+-.......+.+|+.|.++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 46899999999999999999998765221111246789999875
No 218
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.49 E-value=0.0041 Score=58.51 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||++.+++.... ..+..+++|+.+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~~ 51 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEGL 51 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC
Confidence 3468999999999999999999886532 23456899998763
No 219
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.48 E-value=0.0031 Score=57.64 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+++|.|+||+||||++.+++... ...+..+.+++.++=
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~--~~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG--LARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCC
Confidence 37899999999999999887653 134567888987654
No 220
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.02 Score=60.12 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=59.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC----CCCChhhhHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----GHHDDMLQTAELVHQSSTD 215 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~----g~~~d~~~~ae~v~~ea~~ 215 (446)
.+|.+|.+.|..||||||.+..++-.+- ..+-.+.+|.+|.||.. -+.+|... +.| ....++......
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~k--kkG~K~~LvcaDTFRag--AfDQLkqnA~k~~iP----~ygsyte~dpv~ 170 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYK--KKGYKVALVCADTFRAG--AFDQLKQNATKARVP----FYGSYTEADPVK 170 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHH--hcCCceeEEeecccccc--hHHHHHHHhHhhCCe----eEecccccchHH
Confidence 5799999999999999999988765541 22236789999999852 12222211 111 111222223356
Q ss_pred HHHHHHHHHHhCCCcEEE-eCcCCC
Q 013289 216 AASSLLVTALNEGRDVIM-DGTLSW 239 (446)
Q Consensus 216 ~a~~li~~aL~~G~sVVi-D~T~s~ 239 (446)
++.+=+++.-+++.++|+ ||.-.+
T Consensus 171 ia~egv~~fKke~fdvIIvDTSGRh 195 (483)
T KOG0780|consen 171 IASEGVDRFKKENFDVIIVDTSGRH 195 (483)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCch
Confidence 677788889999998766 665443
No 221
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.43 E-value=0.0038 Score=58.79 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=34.1
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 65 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDL 65 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEc
Confidence 333333567899999999999999999998654 23456677776544
No 222
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.43 E-value=0.0018 Score=56.45 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
....++.|.|+|||||||+.+.|+.... +..+.+.++...+.
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~ 50 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDIS 50 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGT
T ss_pred cCCCEEEEEccCCCccccceeeeccccc---cccccccccccccc
Confidence 3467999999999999999999987642 23456777765553
No 223
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0021 Score=65.20 Aligned_cols=124 Identities=18% Similarity=0.102 Sum_probs=66.5
Q ss_pred cccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc--cc-----chHHHH-HHhcCCCCChhh
Q 013289 132 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF--KE-----TDVIYR-ALSSKGHHDDML 203 (446)
Q Consensus 132 ~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i--r~-----~d~irk-~L~~~g~~~d~~ 203 (446)
.+.+.....++.+|.|+|+|||||||+...|..++. +.+....+|.-|-= +. -|-+|- .++. +|+.+.
T Consensus 41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~--~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~--~~~vFi 116 (323)
T COG1703 41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR--ERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAV--DPGVFI 116 (323)
T ss_pred HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH--HCCcEEEEEEECCCCCCCCccccccHhhHHhhcc--CCCeEE
Confidence 333334446789999999999999999999888763 33343444433321 10 011111 1211 111110
Q ss_pred h---HHHHHHHHHHHHHHHHHHHHHhCCCcEE-EeCcCCCHHHHHHHHHHHhhcccccccccccc
Q 013289 204 Q---TAELVHQSSTDAASSLLVTALNEGRDVI-MDGTLSWVPFVEQTIAMARNVHKSRYRMGVGY 264 (446)
Q Consensus 204 ~---~ae~v~~ea~~~a~~li~~aL~~G~sVV-iD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY 264 (446)
. +... -....+.....+.-+=..|.++| +||+-...+..+ +..+ ++-..+.+-||+
T Consensus 117 Rs~~srG~-lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~-I~~~---aDt~~~v~~pg~ 176 (323)
T COG1703 117 RSSPSRGT-LGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD-IANM---ADTFLVVMIPGA 176 (323)
T ss_pred eecCCCcc-chhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH-Hhhh---cceEEEEecCCC
Confidence 0 0000 11123444556777777899875 588877665544 3333 455666677766
No 224
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.41 E-value=0.0026 Score=60.21 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l 166 (446)
+++++||+||||||+...++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999888765
No 225
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.41 E-value=0.016 Score=58.56 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
++|.+|++.|..|||||||..+|-..+. .......+||.|
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLD 56 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLD 56 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCC
Confidence 6799999999999999999999988764 222234667766
No 226
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.40 E-value=0.008 Score=62.75 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=59.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..+-++++.|-|||||||++...... .++.++++|.+-. |.. .. .
T Consensus 267 ~~~eiV~~vgfp~sGks~f~a~~~~~-------~~y~~vn~d~lg~-------------~~~-----------C~----~ 311 (422)
T KOG2134|consen 267 GHGEIVVAVGFPGSGKSTFAAKRVVP-------NGYKIVNADTLGT-------------PQN-----------CL----L 311 (422)
T ss_pred CCCcEEEEEecCCCCcchhhhhhccc-------CceeEeecccCCC-------------chh-----------hH----H
Confidence 44589999999999999999876554 3689999998721 100 11 1
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhh
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 252 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~ 252 (446)
.-.+++..|++||+|.|.-....++.++..|+.
T Consensus 312 ~~~e~l~~~~sVvidnt~pd~~sr~~~~~~a~e 344 (422)
T KOG2134|consen 312 ANAEALKHGKSVVIDNTNPDAESRKYYLDCATE 344 (422)
T ss_pred HHHHHhhcccEEeeCCCCcchHHHHHHhhhHHH
Confidence 345688899999999999988888888777654
No 227
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.39 E-value=0.0038 Score=58.04 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-....++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL---RPQSGAVLIDGEPL 56 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceeEEECCEEc
Confidence 3567899999999999999999998653 23345677765443
No 228
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.39 E-value=0.0037 Score=59.15 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=33.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~ 68 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD---RPTSGEVRVDGTDI 68 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc---CCCceeEEECCEeh
Confidence 33333567899999999999999999998764 23446677765444
No 229
>PRK09087 hypothetical protein; Validated
Probab=96.39 E-value=0.016 Score=56.34 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=48.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 223 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~ 223 (446)
.+++.|++||||||+++.+++.. ++.+|+.+.+... ....+.....--|......... .....++..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~~~~~~--~~~~~~~~~l~iDDi~~~~~~~----~~lf~l~n~ 112 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-------DALLIHPNEIGSD--AANAAAEGPVLIEDIDAGGFDE----TGLFHLINS 112 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-------CCEEecHHHcchH--HHHhhhcCeEEEECCCCCCCCH----HHHHHHHHH
Confidence 46999999999999999988774 4678888765321 1111111000000000000101 123447777
Q ss_pred HHhCCCcEEEeCcCCCH
Q 013289 224 ALNEGRDVIMDGTLSWV 240 (446)
Q Consensus 224 aL~~G~sVViD~T~s~~ 240 (446)
+.+.|+.+|+-++...+
T Consensus 113 ~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 113 VRQAGTSLLMTSRLWPS 129 (226)
T ss_pred HHhCCCeEEEECCCChH
Confidence 88889999998776544
No 230
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.38 E-value=0.0035 Score=58.92 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+|.++.++|++||||||+++.|...+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHH
Confidence 456689999999999999999998776
No 231
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.37 E-value=0.0039 Score=58.65 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-....++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 64 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI---KESSGSILLNGKPI 64 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEh
Confidence 3567899999999999999999998753 23456677765544
No 232
>PRK04296 thymidine kinase; Provisional
Probab=96.34 E-value=0.0047 Score=58.14 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
..+++++|+|||||||++..++.++. .++..+.++.+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEec
Confidence 57899999999999999998887752 23345666754
No 233
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.34 E-value=0.0043 Score=58.49 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+. +..|.+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~ 64 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDV 64 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEC
Confidence 5678999999999999999999987642 3345677765444
No 234
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.34 E-value=0.004 Score=57.29 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-+++.|++||||||++..|.++ ++.+|.-|.+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~--------g~~lvaDD~v 47 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR--------GHRLVADDRV 47 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc--------CCeEEECCEE
Confidence 577999999999999999999887 3556655543
No 235
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0044 Score=58.54 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~ 64 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE---RPDSGEILIDGRDV 64 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEc
Confidence 567899999999999999999998653 23446677765444
No 236
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.33 E-value=0.0042 Score=54.11 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|++||||||+++.+. . +.+.++.|++
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~-~--------G~i~~~g~di 47 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI-K--------RKHRLVGDDN 47 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh-C--------CeEEEeeEeH
Confidence 345899999999999999999987 2 2466777766
No 237
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.0039 Score=64.40 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=40.1
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHH
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 189 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~i 189 (446)
..+...-+..-++++.|||||||||+.+.++.- ..+..|-+.|+..++....|.
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL---e~~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL---EEPTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEECCEECCCCChh
Confidence 334444466789999999999999999999854 355678899998777543333
No 238
>PF13173 AAA_14: AAA domain
Probab=96.32 E-value=0.0051 Score=53.84 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.++++.||.|+||||+++++++.+. ...+..+||.|+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCH
Confidence 5889999999999999999998752 2346788988876
No 239
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.32 E-value=0.0044 Score=58.46 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~ 66 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGEDV 66 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEc
Confidence 557899999999999999999998654 23456677765544
No 240
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.32 E-value=0.0073 Score=59.31 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.--+++.||||.||||+|..++.+++ .++..+++..+.+
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~i~k 88 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPAIEK 88 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC--S
T ss_pred cceEEEECCCccchhHHHHHHHhccC-----CCeEeccchhhhh
Confidence 34578999999999999999999985 4677777766643
No 241
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.31 E-value=0.014 Score=61.61 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
....|+|.|++||||||+++.|+..++
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999999874
No 242
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0037 Score=61.49 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 189 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~i 189 (446)
+..-++.+-|||||||||++..|+..... +.-.+-+.++..+|....+.
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPD 76 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHh
Confidence 56789999999999999999999876321 11234466666666544333
No 243
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.30 E-value=0.0045 Score=58.31 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i 65 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE---LPTSGTIRVNGQDV 65 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEc
Confidence 567899999999999999999998754 23345666765433
No 244
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.29 E-value=0.0033 Score=54.05 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcc---cCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFW---SGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~---~~~~~~~vvIdaD~i 183 (446)
...++++.|++|+||||+++.+...+.. .....+.++++...-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 4678999999999999999999887520 000234566665443
No 245
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.29 E-value=0.025 Score=58.24 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
....|+++|++||||||+.+.|.....
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999998763
No 246
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.005 Score=58.05 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPL 64 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCch
Confidence 5678999999999999999999987542 3345666765433
No 247
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.28 E-value=0.005 Score=58.38 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=32.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-...-++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 66 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL---RPTSGTAYINGYSI 66 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEec
Confidence 3567899999999999999999998653 23456677765544
No 248
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.0046 Score=59.38 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~ 64 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL---RPDSGEVLIDGEDI 64 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 567899999999999999999998654 23446677776544
No 249
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.28 E-value=0.0045 Score=59.30 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 64 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL---RPTSGSVLFDGEDI 64 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCceEEECCEEC
Confidence 557899999999999999999998653 23346677776544
No 250
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.27 E-value=0.0047 Score=59.43 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=32.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-..+.++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~i 65 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY---VAQEGQISVAGHDL 65 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCEEc
Confidence 3567899999999999999999998653 23456677776544
No 251
>PHA00729 NTP-binding motif containing protein
Probab=96.26 E-value=0.0035 Score=61.34 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..-+++.|+||+||||+|..|+..+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999885
No 252
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.26 E-value=0.0051 Score=58.28 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=33.5
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-....++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 64 (222)
T cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL---PPRSGSIRFDGRDI 64 (222)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEc
Confidence 333333567899999999999999999997654 23345677765444
No 253
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.26 E-value=0.0048 Score=59.37 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 66 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV---EPSSGSILLEGTDI 66 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc---CCCccEEEECCEEh
Confidence 557899999999999999999998653 23346677775444
No 254
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.26 E-value=0.071 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+|+|+|.+||||||.++.|..-
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lEDl 24 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLEDL 24 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHhc
Confidence 48999999999999999998654
No 255
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.005 Score=59.08 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+++.|+..+ .+..|.+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 65 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV---EPTSGSVLIDGTDI 65 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc---CCCCceEEECCEec
Confidence 567899999999999999999998653 23346677775444
No 256
>PRK04195 replication factor C large subunit; Provisional
Probab=96.26 E-value=0.006 Score=65.42 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 186 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~ 186 (446)
+..++|.||||+||||+++.++..++| ..+.+|+.+.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~-----~~ielnasd~r~~ 78 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW-----EVIELNASDQRTA 78 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEcccccccH
Confidence 678999999999999999999999864 5677777665443
No 257
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.26 E-value=0.0047 Score=55.05 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 168 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~ 168 (446)
+...+|++.|..||||||+++.+++.++.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45689999999999999999999999863
No 258
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.25 E-value=0.0049 Score=54.09 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+++.|+||+|||++++.+++.++ .....++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~ 34 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSS 34 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEecc
Confidence 68999999999999999999874 3455565443
No 259
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0052 Score=58.87 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=32.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 69 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE---RPTSGSVLVDGTDL 69 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEc
Confidence 3567899999999999999999998764 23456677765444
No 260
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0052 Score=57.93 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
... ++.+.|+|||||||+.+.++..+ .+..|-+.++...+
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 63 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLT---PPSSGTIRIDGQDV 63 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCCcc
Confidence 346 99999999999999999998653 23456677776444
No 261
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.24 E-value=0.0048 Score=58.25 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=32.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+...-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++.-.
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~ 62 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL---KPTSGSIRVFGKP 62 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCcc
Confidence 33333567899999999999999999998653 2345667776533
No 262
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.24 E-value=0.005 Score=58.28 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 67 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE---KPTRGKIRFNGQDL 67 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEeh
Confidence 3567899999999999999999998754 23345677765433
No 263
>PF13245 AAA_19: Part of AAA domain
Probab=96.24 E-value=0.0077 Score=48.98 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=18.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.+.+|.|||||||||++..+...+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578889999999996665554443
No 264
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.24 E-value=0.0038 Score=56.48 Aligned_cols=27 Identities=33% Similarity=0.630 Sum_probs=18.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..|.+++|.|++|+||||+.+.+...+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999988775
No 265
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.24 E-value=0.0055 Score=57.71 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 64 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE---EPDSGTIIIDGLKL 64 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEC
Confidence 567899999999999999999998754 23456677765444
No 266
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.23 E-value=0.0054 Score=58.14 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=33.9
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 69 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD---NPTSGEVLFNGQSL 69 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEh
Confidence 333333567899999999999999999998754 23456677765433
No 267
>PF05729 NACHT: NACHT domain
Probab=96.23 E-value=0.0038 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+++|.|++|+||||+++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 378999999999999999988764
No 268
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.23 E-value=0.0046 Score=58.43 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+..+++.|++|+||||+++.++.... ..+..+++++.+.+
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAEL 77 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHH
Confidence 3467889999999999999999987642 12335777876655
No 269
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.005 Score=58.55 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....++.+.|+|||||||+.+.|+... .+..|.+.++.-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~ 67 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE---RPTSGEVLVDGEP 67 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEE
Confidence 567899999999999999999998653 2334566665433
No 270
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.22 E-value=0.0054 Score=58.53 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=34.2
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 28 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~~ 74 (228)
T PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGLD---DGSSGEVSLVGQPL 74 (228)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCeeEEECCEEc
Confidence 333333567899999999999999999998754 23456677765444
No 271
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.21 E-value=0.0053 Score=58.31 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=34.3
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-+...++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 69 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLL---KPTSGSIIFDGKDL 69 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEc
Confidence 333333567899999999999999999998754 23456677765444
No 272
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.21 E-value=0.0055 Score=58.59 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=32.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-....++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 64 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL---PVKSGSIRLDGEDI 64 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEC
Confidence 3567899999999999999999998654 23456677775444
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.20 E-value=0.0071 Score=57.71 Aligned_cols=42 Identities=12% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||++.+++... ...+..+++|+.+.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e~~ 62 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTEGL 62 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 457899999999999999999988653 123457899998743
No 274
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0057 Score=58.14 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=33.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 64 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL---KPTSGRATVAGHDV 64 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEec
Confidence 33333567899999999999999999998653 23345667765443
No 275
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0059 Score=56.40 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 64 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDL 64 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 567899999999999999999998653 23345677765444
No 276
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.19 E-value=0.0052 Score=57.30 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
++++.|++||||||+|.+++...+ ....++.+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~-----~~~~y~at~ 33 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG-----GPVTYIATA 33 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEcc
Confidence 478999999999999999987642 456777654
No 277
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0055 Score=59.07 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=33.8
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 66 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE---RPDSGTILFGGEDA 66 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 333333567899999999999999999998754 23345677765443
No 278
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.18 E-value=0.0064 Score=56.08 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-..+.++.+.|+|||||||+.+.|+... .+..+.+.++...+
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~ 66 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGVPV 66 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCEEH
Confidence 33333567899999999999999999998764 23456677775433
No 279
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.18 E-value=0.0059 Score=58.33 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 64 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV---KPDSGKILLDGQDI 64 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEec
Confidence 567899999999999999999998653 23456677765444
No 280
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.18 E-value=0.0065 Score=57.18 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 64 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI---KPDSGEITFDGKSY 64 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCCcc
Confidence 457899999999999999999998653 23446677776544
No 281
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0061 Score=58.88 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=34.5
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 19 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 65 (242)
T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI---EPTSGEIFIDGEDI 65 (242)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCeEc
Confidence 333333567899999999999999999998654 23456677876554
No 282
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.17 E-value=0.0071 Score=55.60 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~ 66 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADI 66 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEc
Confidence 567899999999999999999998754 23456677765444
No 283
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.16 E-value=0.017 Score=57.46 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEE-eCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 221 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvI-daD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li 221 (446)
-+++++|++||||||+.+.+...+. .+..+.+.| |+.++. +... . .. .. ..+........+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiEdp~E~~--------~~~~--~-q~-~v----~~~~~~~~~~~l 142 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVEDPVEYQ--------IPGI--N-QV-QV----NEKAGLTFARGL 142 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEECCCceec--------CCCc--e-EE-Ee----CCcCCcCHHHHH
Confidence 4899999999999999999877652 111223334 222221 1110 0 00 00 000001123477
Q ss_pred HHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcc
Q 013289 222 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 254 (446)
Q Consensus 222 ~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h 254 (446)
..+|..+-++|+=+-...+.....++..+...|
T Consensus 143 ~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh 175 (264)
T cd01129 143 RAILRQDPDIIMVGEIRDAETAEIAVQAALTGH 175 (264)
T ss_pred HHHhccCCCEEEeccCCCHHHHHHHHHHHHcCC
Confidence 788999999999888888876666666665544
No 284
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0058 Score=59.04 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+..+|.|+|.+-|||||+|+.|.+-+ +++.+|+-|+|=
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f------~~~~lIhqDDFy 40 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFF------PGCSLIHQDDFY 40 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHc------cCCeeecccccc
Confidence 34789999999999999999999887 478899999983
No 285
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0059 Score=59.12 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 67 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI---DPTEGSILIDGVDI 67 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEh
Confidence 557899999999999999999998754 23456677776544
No 286
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.15 E-value=0.0059 Score=58.63 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=34.2
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~i 73 (233)
T PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD---TPTSGDVIFNGQPM 73 (233)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEc
Confidence 333333567899999999999999999998753 23456677775444
No 287
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.15 E-value=0.0064 Score=57.29 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=34.7
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~v~~~g~~~ 65 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA---RPDAGEVLWQGEPI 65 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEc
Confidence 333434567899999999999999999998764 23456677776544
No 288
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.15 E-value=0.007 Score=56.62 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+... .+..|.+.++.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i 64 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM---QPSSGNIYYKNCNI 64 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCccc
Confidence 567899999999999999999998764 23456677765444
No 289
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.15 E-value=0.0043 Score=60.21 Aligned_cols=26 Identities=31% Similarity=0.680 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+-++++.|++||||||+++.+...+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 35688999999999999999998875
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.15 E-value=0.0067 Score=56.12 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.+.... .+..|.+.++...+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~ 63 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDL 63 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEC
Confidence 557899999999999999999998754 23456777775444
No 291
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.14 E-value=0.0061 Score=57.75 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 62 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSH 62 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEc
Confidence 467899999999999999999998764 23456677776544
No 292
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0063 Score=58.23 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+-++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 66 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY---DVDSGRILIDGHDV 66 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc---cCCCCEEEECCEEh
Confidence 567899999999999999999998664 23456677776544
No 293
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0063 Score=57.37 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~---~~~~G~i~~~g~~~ 62 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDV 62 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEc
Confidence 457899999999999999999998654 23456677776554
No 294
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.13 E-value=0.0067 Score=56.82 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=32.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 64 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLL---RPDSGEVRWNGTAL 64 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEc
Confidence 3567899999999999999999998754 23456677776544
No 295
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.13 E-value=0.0068 Score=57.82 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc--ccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF--WSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~--~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+. -..+..|.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 69 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDI 69 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEh
Confidence 5678999999999999999999987540 0023346677776554
No 296
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.0064 Score=60.51 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=36.4
Q ss_pred ccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 131 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 131 ~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++.-+...-..+.++.+.|||||||||+.+.++.-+ .+..|.+.+....+
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll---~p~~G~i~~~g~~~ 68 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL---KPSSGEIKIFGKPV 68 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---cCCcceEEEccccc
Confidence 444455545667899999999999999999998743 33456777765543
No 297
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.12 E-value=0.0065 Score=56.88 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....++.+.|+|||||||+.+.|+..+ .+..|-+.++.-.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~ 61 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE---KFDSGQVYLNGKE 61 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEE
Confidence 457899999999999999999998754 2334566676544
No 298
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.12 E-value=0.013 Score=62.26 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
.|.-++|.||||+||||+|+.|++.++ ..++.+|+..|-
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~-----~~fi~vD~t~f~ 87 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFT 87 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-----Chheeecchhhc
Confidence 467789999999999999999999874 356666665553
No 299
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.11 E-value=0.007 Score=57.98 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=32.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-..+.++.+.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 71 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDI 71 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCeEEECCEEc
Confidence 3567899999999999999999998653 23456677775444
No 300
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.0071 Score=63.30 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..+.++++.||+|+||||++..|+..+-.........+|..|.++
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 446799999999999999999998763110011357789999986
No 301
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.11 E-value=0.0066 Score=58.43 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 49 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA---QPTSGGVILEGKQI 49 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEC
Confidence 456899999999999999999998654 23446677765444
No 302
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.0066 Score=57.90 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=33.2
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 67 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFY---DPQKGQILIDGIDI 67 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEeH
Confidence 333567899999999999999999998764 23456777776444
No 303
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0071 Score=55.60 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=32.4
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-....++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~ 64 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDI 64 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEc
Confidence 333557899999999999999999998753 23456677765444
No 304
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.09 E-value=0.007 Score=56.11 Aligned_cols=41 Identities=12% Similarity=0.300 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...++.+.|+|||||||+.+.|+..+. +..|-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPV 64 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEC
Confidence 5678999999999999999999987642 3456677776444
No 305
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.09 E-value=0.0069 Score=58.14 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 66 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY---VPENGRVLVDGHDL 66 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCeeh
Confidence 567899999999999999999998764 23346677776444
No 306
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.09 E-value=0.0078 Score=56.55 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~ 65 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL---NPEKGEILFERQSI 65 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeeEEECCCcc
Confidence 567899999999999999999998754 34456777876554
No 307
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.09 E-value=0.02 Score=56.10 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=49.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
+...++++.|+||||||+++.+++-+. ...+..+++|..|+-.+ .+.+.+...++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~--~~~ge~vlyvs~~e~~~--~l~~~~~~~g~--------------------- 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG--AREGEPVLYVSTEESPE--ELLENARSFGW--------------------- 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH--HhcCCcEEEEEecCCHH--HHHHHHHHcCC---------------------
Confidence 456799999999999999999987763 23356689998877532 12222222211
Q ss_pred HHHHHHhCCCcEEEeCcCCC
Q 013289 220 LLVTALNEGRDVIMDGTLSW 239 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~ 239 (446)
-.+...+.|..+++|.....
T Consensus 76 d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 76 DLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred CHHHHhhcCCEEEEEccccc
Confidence 12245668899999866543
No 308
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.007 Score=58.11 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 63 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL---TPASGSLTLNGQDH 63 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCeec
Confidence 457899999999999999999998754 23456677876554
No 309
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.08 E-value=0.017 Score=61.41 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+.++++.||+|+||||++..|+..+-....+..+.+|++|.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 4688899999999999998887654100123468899999975
No 310
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0079 Score=55.19 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=33.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-....++.+.|+|||||||+.+.++..+. +..|.+.++...+
T Consensus 21 i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~ 66 (171)
T cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDL 66 (171)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEh
Confidence 333335678999999999999999999987642 3456677776444
No 311
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.06 E-value=0.0093 Score=57.28 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=34.0
Q ss_pred CCC-eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccch
Q 013289 140 RSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD 187 (446)
Q Consensus 140 ~~P-~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d 187 (446)
.+| ..|.++|||||||||+...+.+.+. ..-...+|-.|.+.+.|
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~---~~~~~aVI~~Di~t~~D 55 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALK---DEYKIAVITGDIYTKED 55 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHH---hhCCeEEEeceeechhh
Confidence 457 8999999999999999988766652 11257888888886443
No 312
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.027 Score=58.18 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
-++|++.||||.||||++++|++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 4799999999999999999999987
No 313
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0073 Score=58.21 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 67 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV---PRDAGNIIIDDEDI 67 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEC
Confidence 567899999999999999999998764 23456677776544
No 314
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.05 E-value=0.0072 Score=58.49 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 67 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE---QPEAGTIRVGDITI 67 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEc
Confidence 567899999999999999999998654 23345666765444
No 315
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.0081 Score=63.24 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=35.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..+.++++.||+|+||||++..|+..+. ..+..+.+|++|.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCc
Confidence 4578999999999999999999886542 2234678899999975
No 316
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.05 E-value=0.0075 Score=57.09 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=33.0
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..+...-....++.+.|+|||||||+.+.|+..+ .+..|.+.++.-.
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~ 68 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL---EPDAGFATVDGFD 68 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc---CCCCceEEECCEE
Confidence 3333333557899999999999999999998653 2334566676433
No 317
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.04 E-value=0.0057 Score=55.80 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.|-+.++.|+||+||||++..|.-.++
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999999977664
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.04 E-value=0.0077 Score=56.52 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
+...++.+.|+|||||||+.+.++... .+..+.+.++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g 60 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDG 60 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECC
Confidence 456799999999999999999998653 23445666654
No 319
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.03 E-value=0.0078 Score=57.07 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+.++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 68 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV---ELSSGSILIDGVDI 68 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEh
Confidence 567899999999999999999998653 23456677765444
No 320
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.03 E-value=0.0054 Score=57.52 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=25.0
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHH
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~ 164 (446)
.+...-..+.++.+.|||||||||+.+.++.
T Consensus 13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3334446678999999999999999998864
No 321
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0075 Score=57.78 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~v~~~g~~~ 65 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY---DVSSGSILIDGQDI 65 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCEEEECCEEh
Confidence 567899999999999999999998654 23456777776444
No 322
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.03 E-value=0.018 Score=60.54 Aligned_cols=39 Identities=28% Similarity=0.429 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.+++|-||||+|||.+++.++.+++ .+.+.+++-++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg-----~~~i~vsa~eL 184 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG-----IEPIVMSAGEL 184 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC-----CCeEEEEHHHh
Confidence 6799999999999999999999999986 36777876655
No 323
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0075 Score=58.56 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 69 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY---KPTGGTILLRGQHI 69 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc---CCCcceEEECCEEC
Confidence 567899999999999999999998754 23456777776554
No 324
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.02 E-value=0.0079 Score=57.77 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 67 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY---DPTSGEILLDGVDI 67 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC---CCCCCEEEECCEeh
Confidence 567899999999999999999998764 23456677765443
No 325
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.02 E-value=0.0083 Score=59.29 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....+++|+|+||+||||++.+++... ...+..+.+|+.+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 456899999999999999999987652 12345788898763
No 326
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.01 E-value=0.0084 Score=57.14 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=32.5
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-+.+.++.+.|+|||||||+.+.|+..+ .+..|.+.++.-.+
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 78 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFY---QPQGGQVLLDGKPI 78 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCcEEEECCCch
Confidence 333567899999999999999999998764 23445677765333
No 327
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.0079 Score=56.95 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
.. .++.+.|+|||||||+.+.|+..+ .+..|.+.++.-.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~ 60 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE---KPDGGTIVLNGTV 60 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEe
Confidence 45 899999999999999999998654 2334556666433
No 328
>PRK10646 ADP-binding protein; Provisional
Probab=96.00 E-value=0.0081 Score=55.50 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 168 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~ 168 (446)
+.+.+|++.|.-||||||+++.+++.+|+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44678999999999999999999999874
No 329
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.99 E-value=0.0052 Score=58.46 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..++++.|||||||||+.+.+...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 379999999999999999998753
No 330
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.99 E-value=0.0084 Score=56.31 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=31.2
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
.+...-+.+.++.+.|+|||||||+.+.++... .+..|.+.++
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~---~~~~G~i~~~ 65 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGEL---EKLSGSVSVP 65 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC---CCCCCeEEEc
Confidence 333334567899999999999999999998753 2344555554
No 331
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.008 Score=58.98 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=32.6
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
.+...-....++.|.|+|||||||+.+.|+..+ .+..|.+.++..
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~ 63 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSITLDGK 63 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCE
Confidence 333333567899999999999999999998653 233456667643
No 332
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.98 E-value=0.0079 Score=57.93 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 65 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE---EITSGDLIVDGLKV 65 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 567899999999999999999998754 23346677776444
No 333
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.98 E-value=0.023 Score=56.48 Aligned_cols=27 Identities=33% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.|.-+++.||||+||||+++.++..++
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345578999999999999999999874
No 334
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.98 E-value=0.0081 Score=57.67 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC----CCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA----ATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~----~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+... .+ ..|-+.++...+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~~~~~G~i~~~g~~~ 54 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL---PPGLTQTSGEILLDGRPL 54 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCccCccccEEEECCEec
Confidence 457899999999999999999998764 22 345677776554
No 335
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.97 E-value=0.0085 Score=54.78 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-...-++.+.|+|||||||+.+.|+... .+..+.+.++...+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~ 64 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEV 64 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEC
Confidence 3567899999999999999999998654 23456677776544
No 336
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.97 E-value=0.0083 Score=57.88 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+-++.+.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 66 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE---MPRSGTLNIAGNHF 66 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEec
Confidence 567899999999999999999998653 23456677765443
No 337
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.97 E-value=0.015 Score=62.64 Aligned_cols=43 Identities=14% Similarity=0.356 Sum_probs=34.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
....++++.|+||+||||++.+++... ...+..+.+++.++-.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEESR 303 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeCCH
Confidence 456899999999999999999988763 2345678999988753
No 338
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.97 E-value=0.007 Score=54.99 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+.+.|++||||||++..++..+ ...+....+++.|.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~--~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL--RARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEeCC
Confidence 6788999999999999998764 23345677888874
No 339
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.96 E-value=0.0086 Score=57.26 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=31.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-....++.+.|+|||||||+.+.|+..+.-.++..+-++++...+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 356789999999999999999999865410002345667765444
No 340
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.96 E-value=0.011 Score=57.06 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...-+++++|||||||||+.+.|.... .+..+-+.++.-++
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e---~pt~G~i~~~~~dl 66 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE---RPTRGKILVNGHDL 66 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh---cCCCceEEECCeec
Confidence 557899999999999999999988764 33445566654333
No 341
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.95 E-value=0.0089 Score=56.63 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 68 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY---KPTSGSVLLDGTDI 68 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCeEEECCEEh
Confidence 567899999999999999999998653 23445677765443
No 342
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.95 E-value=0.009 Score=58.35 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=32.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
-..+.++.+.|+|||||||+++.|+..+ .+..|.+.++...
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~ 69 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARL---APDAGEVHYRMRD 69 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCcc
Confidence 3567899999999999999999998764 2345667777654
No 343
>PRK10908 cell division protein FtsE; Provisional
Probab=95.94 E-value=0.0085 Score=57.04 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i 66 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE---RPSAGKIWFSGHDI 66 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 567899999999999999999998654 23456677765444
No 344
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.0076 Score=59.23 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~ 75 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQ---PPSEGEILLDAQPL 75 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCEeh
Confidence 567899999999999999999998653 23456677776544
No 345
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.94 E-value=0.0083 Score=58.31 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i 64 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLE---PIDEGQIQVEGEQL 64 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 3567899999999999999999998654 23445677765444
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.93 E-value=0.0087 Score=53.75 Aligned_cols=40 Identities=30% Similarity=0.219 Sum_probs=30.0
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 138 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 138 ~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
.-....++.+.|+|||||||+.+.++..+ .+..+.+.++.
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~ 61 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGS 61 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECC
Confidence 33567899999999999999999998754 23345566653
No 347
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.0098 Score=58.86 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...-.+.+.|++||||||+++.++. |..+..|.+.++...+
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G---l~~p~~G~I~~~G~~~ 71 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG---LEKPSSGSILLDGKPL 71 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc---ccCCCCceEEECCccc
Confidence 5678999999999999999999974 4455678888987654
No 348
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.92 E-value=0.005 Score=65.60 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..=|+++|+||||||||+++|++-+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH
Confidence 3458999999999999999998754
No 349
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.92 E-value=0.0095 Score=56.35 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.++... .+..|.+.++...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 66 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDI 66 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEeC
Confidence 567899999999999999999998754 23346677775443
No 350
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.92 E-value=0.01 Score=51.90 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+++.|.+|+||||++..++..+ .+.+....+||+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l--~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYL--AEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCc
Confidence 7899999999999999887764 23345678899886
No 351
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.92 E-value=0.0068 Score=57.86 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC-CCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~-~~~~vvIdaD~i 183 (446)
+.+.++++.|+||||||+++.+++.+. ... +.++.+|+.++=
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~--~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG--LKNFGEKVLYVSFEEP 59 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHHHT--EEEEESSS-
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh--hhhcCCcEEEEEecCC
Confidence 456899999999999999999876542 122 467899987764
No 352
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.92 E-value=0.012 Score=55.91 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=33.4
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.++...-...-.+.++||+||||||+.+.++.-. .+..|.+......+
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li---sp~~G~l~f~Ge~v 67 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDV 67 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHHHhcc---CCCCceEEEcCccc
Confidence 4444444667899999999999999999998753 22344555554444
No 353
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.91 E-value=0.0095 Score=54.64 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=30.9
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
.+...-....++.+.|+|||||||+.+.++..+. +..+.+.++
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~ 61 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMP 61 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEEC
Confidence 3334335678999999999999999999987642 234455554
No 354
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0082 Score=59.19 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.|.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 65 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLL---RPQKGAVLWQGKPL 65 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC---CCCccEEEECCEEc
Confidence 457899999999999999999998654 23456677776544
No 355
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.91 E-value=0.0097 Score=56.65 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=32.6
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
..+...-...-++.+.|+|||||||+.+.|+..+ .+..|.+.++
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~ 68 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY---LPDSGRILVR 68 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEEe
Confidence 3444444567899999999999999999998754 2334667776
No 356
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.91 E-value=0.01 Score=56.92 Aligned_cols=40 Identities=33% Similarity=0.321 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...++.+.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 44 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI---PPAKGTVKVAGASP 44 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCccc
Confidence 46799999999999999999998754 23345677776544
No 357
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.90 E-value=0.0098 Score=57.26 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=32.9
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-.-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~ 66 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTMMDVITGKT---RPDEGSVLFGGTDL 66 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEECCeec
Confidence 333567899999999999999999998754 23456677775444
No 358
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.90 E-value=0.057 Score=50.35 Aligned_cols=33 Identities=6% Similarity=0.171 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|-|+|..|||++|+++.|++.+| +.++|.+.+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg-------~~~~d~~ii 33 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG-------YPYYDREII 33 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT---------EE-HHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHcC-------CccCCHHHH
Confidence 688999999999999999999984 788887655
No 359
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.89 E-value=0.0061 Score=57.49 Aligned_cols=25 Identities=44% Similarity=0.398 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~ 164 (446)
..+.+++++|||||||||+.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3457999999999999999999983
No 360
>PF13479 AAA_24: AAA domain
Probab=95.89 E-value=0.0081 Score=57.48 Aligned_cols=33 Identities=21% Similarity=0.561 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
++|.-++|.|+||+||||++..+ . +..+||.|.
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~-~---------k~l~id~E~ 33 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL-P---------KPLFIDTEN 33 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC-C---------CeEEEEeCC
Confidence 35789999999999999999988 2 467888764
No 361
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.89 E-value=0.01 Score=59.32 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+.|.++++.|++|+||||+++.++..++ .+...+|+..
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~~~~i~~~~ 78 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVG-----AEVLFVNGSD 78 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----ccceEeccCc
Confidence 4588999999999999999999998763 3456666544
No 362
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.88 E-value=0.012 Score=58.89 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=38.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 189 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~i 189 (446)
....++++.|||||||||+.+.+-.-. ++..|.+.||...++..|+.
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLi---ept~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLI---EPTSGEILIDGEDISDLDPV 71 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhccc---CCCCceEEECCeecccCCHH
Confidence 557899999999999999999986543 55678899998888765544
No 363
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.88 E-value=0.0086 Score=55.60 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+++++|+||+||||+..+|+..
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHc
Confidence 78999999999999999999987
No 364
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.88 E-value=0.0067 Score=57.94 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
....++.+.|+|||||||+.+.++.-.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456899999999999999999998653
No 365
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.87 E-value=0.0092 Score=57.93 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=32.5
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
.+...-....++.+.|+|||||||+.+.|+... .+..|.+.++.
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g 64 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL---APDHGTATYIM 64 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEEec
Confidence 333434567899999999999999999998764 23445677764
No 366
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.86 E-value=0.012 Score=57.16 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++++.|+|||||||++.+++... . ..+..+++|+.++-
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEEH 60 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeCC
Confidence 457899999999999999998876542 1 23456889987764
No 367
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.013 Score=61.92 Aligned_cols=59 Identities=25% Similarity=0.343 Sum_probs=38.7
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc-cchHHHHHHhc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSS 195 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir-~~d~irk~L~~ 195 (446)
|+...-+++-++++.|.|||||||+++.|..-+ .|..|-+.+|..-+- ++...|+.|.+
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~---~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY---QPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhccc---CCCCCceeECCccCCCCCHHHHHHHHH
Confidence 444445678899999999999999999986543 344556666643331 12234555544
No 368
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0098 Score=58.73 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=34.1
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~---~p~~G~i~i~g~~~ 88 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI---EPTSGKVLIDGQDI 88 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEc
Confidence 333334567899999999999999999998754 23346677765444
No 369
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.84 E-value=0.012 Score=56.45 Aligned_cols=43 Identities=9% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....+++|+|+||+||||++.+++...- ...+..+.+++.+.=
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~~ 53 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEMS 53 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCCC
Confidence 3467999999999999999998876531 111457888987763
No 370
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.84 E-value=0.0095 Score=57.17 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=32.1
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
..+...-....++.+.|+|||||||+.+.++... .+..+.+.++.
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g 83 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY---PPDSGTVTVRG 83 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECC
Confidence 3333333567899999999999999999998753 23345566654
No 371
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.83 E-value=0.0062 Score=58.61 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~ 164 (446)
.|.+.++.|||||||||+.+.|.-
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~~ 45 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIRF 45 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999999873
No 372
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.82 E-value=0.0099 Score=58.28 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=34.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-..+.++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~p~~G~i~~~g~~~ 66 (258)
T PRK13548 21 VSLTLRPGEVVAILGPNGAGKSTLLRALSGEL---SPDSGEVRLNGRPL 66 (258)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEc
Confidence 33333567899999999999999999998754 23456677776544
No 373
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.81 E-value=0.01 Score=57.41 Aligned_cols=39 Identities=26% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++..
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~---~p~~G~i~~~g~ 83 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLL---QPTSGEVRVAGL 83 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCE
Confidence 567899999999999999999998754 233456666543
No 374
>COG4240 Predicted kinase [General function prediction only]
Probab=95.81 E-value=0.0091 Score=58.91 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=33.8
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 138 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 138 ~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
...+|.++.++||-||||||++..|...+- .........++.|++=
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~-~kg~ert~~lSLDDlY 91 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA-AKGLERTATLSLDDLY 91 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH-HhcccceEEeehhhhh
Confidence 346799999999999999999977655431 0111367888999884
No 375
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.81 E-value=0.012 Score=55.87 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=34.4
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+...-..+.++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 65 (218)
T cd03290 18 SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM---QTLEGKVHWSNKNE 65 (218)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCeEEECCccc
Confidence 3444334567899999999999999999998754 23456677765433
No 376
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.01 Score=58.47 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...-++.+.|+|||||||+.+.|+..+ .+..|.+.++.-.+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~ 73 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE---KVKSGEIFYNNQAI 73 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 457899999999999999999998754 23456677776444
No 377
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.80 E-value=0.01 Score=57.04 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=32.6
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-.-...-++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~ 69 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDP---RATSGRIVFDGKDI 69 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCceEEECCEec
Confidence 333567899999999999999999998653 23456677775444
No 378
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=95.80 E-value=0.078 Score=52.47 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 221 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li 221 (446)
+++++++|-.|+||||++..|+..+ +..+..+..||+|.-...---++.+... .-+.....+. . .+....++
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l--~~~g~~vl~iD~D~~n~~~~~~~~l~~~--~~~i~~~~~i-~---~r~fD~Lv 74 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYK--ASKGQKPLCIDTDPVNATFEGYKALNVR--RLNIMDGDEI-N---TRNFDALV 74 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHH--HhCCCCEEEEECCCCCchhhhHHhcCCc--ceecccCCcc-c---hhhHHHHH
Confidence 4677888999999999999887764 3345678999999653221112322221 0000000000 0 12234577
Q ss_pred HHHHhCCCcEEEeCcCCC
Q 013289 222 VTALNEGRDVIMDGTLSW 239 (446)
Q Consensus 222 ~~aL~~G~sVViD~T~s~ 239 (446)
+.+...+.++|+|.+-+.
T Consensus 75 e~i~~~~~dvIIDngAs~ 92 (241)
T PRK13886 75 EMIASTEGDVIIDNGASS 92 (241)
T ss_pred HHHhccCCCEEEECCCcc
Confidence 777778889999977543
No 379
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.80 E-value=0.01 Score=58.51 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=32.5
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-...-++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 71 (269)
T PRK11831 28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQI---APDHGEILFDGENI 71 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEc
Confidence 333567899999999999999999998754 23345677765443
No 380
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.79 E-value=0.014 Score=56.83 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...++++.|+|||||||++.+++... ..++....+|+.++-
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF--LQNGYSVSYVSTQLT 63 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEeCCCC
Confidence 345699999999999999987765543 123456788887654
No 381
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.79 E-value=0.01 Score=59.64 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|||||||||+.+.|+.-+ .+..|.+.++...+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 57 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL---RPTSGTARVAGYDV 57 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 557899999999999999999998654 23456677776544
No 382
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.79 E-value=0.067 Score=54.78 Aligned_cols=99 Identities=24% Similarity=0.299 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV 222 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~ 222 (446)
-||+++||.||||||....+...+. ... ...+|-- .||+- -+..... ....-.| ++.. +.-...-+.
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN--~~~-~~HIlTI-----EDPIE-~vh~skk--slI~QRE-vG~d-T~sF~~aLr 192 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYIN--KHK-AKHILTI-----EDPIE-YVHESKK--SLINQRE-VGRD-TLSFANALR 192 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHh--ccC-CcceEEe-----cCchH-hhhcchH--hhhhHHH-hccc-HHHHHHHHH
Confidence 4999999999999998888776642 111 1223321 12220 0111000 0000000 0111 122334677
Q ss_pred HHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcc
Q 013289 223 TALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 254 (446)
Q Consensus 223 ~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h 254 (446)
.||.+--+||+=|-+...+-....+..|.-.|
T Consensus 193 aALReDPDVIlvGEmRD~ETi~~ALtAAETGH 224 (353)
T COG2805 193 AALREDPDVILVGEMRDLETIRLALTAAETGH 224 (353)
T ss_pred HHhhcCCCEEEEeccccHHHHHHHHHHHhcCC
Confidence 89999999999999999988888777776655
No 383
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.78 E-value=0.0099 Score=58.82 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~i 71 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLH---VPTQGSVRVDDTLI 71 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc
Confidence 567899999999999999999998653 23456677765444
No 384
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.78 E-value=0.01 Score=56.39 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=33.8
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-...-++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~i 75 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL---HVESGQIQIDGKTA 75 (214)
T ss_pred cceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCCeeEEECCEEc
Confidence 333333567899999999999999999998753 23445677765444
No 385
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.01 Score=58.69 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=33.3
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-...-++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 71 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFV---RLASGKISILGQPT 71 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEh
Confidence 333333567899999999999999999998654 23345666765433
No 386
>PTZ00202 tuzin; Provisional
Probab=95.78 E-value=0.051 Score=58.48 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
.|.+++|+|++|+||||+++.+...++ .-..++|+-
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr 320 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR 320 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC
Confidence 467999999999999999999987753 225666665
No 387
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.78 E-value=0.011 Score=58.31 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-...-++.+.|+|||||||+.+.|+... .+..|-+.++...+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~i 73 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLL---KPQSGEIKIDGITI 73 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEec
Confidence 3567899999999999999999998654 23456677775444
No 388
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.011 Score=56.82 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=33.2
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-.-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~---~~~~G~i~~~g~~~ 64 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFE---TPTSGEILLDGKDI 64 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEc
Confidence 333557899999999999999999998764 23456677765544
No 389
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.77 E-value=0.011 Score=58.14 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=33.0
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-..+.++.|.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 34 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 77 (267)
T PRK15112 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMI---EPTSGELLIDDHPL 77 (267)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEC
Confidence 333567899999999999999999998764 23456677765444
No 390
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.76 E-value=0.0077 Score=56.07 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l 166 (446)
|+++|+||+||||+.+.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999988876
No 391
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.039 Score=58.68 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..+.++.+.|+||+||||+...|+..+-.........+|..|.++
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 346899999999999999999888753100111245677788876
No 392
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.76 E-value=0.1 Score=50.69 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+++.||+|+|||+++..++.... ..+..+.+++.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~ 84 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKR 84 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHH
Confidence 3688999999999999999887642 12334678877764
No 393
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.75 E-value=0.011 Score=57.17 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCC-----CCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-----TNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~-----~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+. +. .|-+.++...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEc
Confidence 5678999999999999999999986541 22 45677766554
No 394
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.74 E-value=0.011 Score=58.41 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..+.++.|.|+|||||||+.+.|+..+ .+..|.+.++...
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~---~p~~G~i~~~g~~ 75 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE---TPSAGELLAGTAP 75 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEE
Confidence 567899999999999999999998754 2334556665443
No 395
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.18 Score=56.58 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=39.0
Q ss_pred hhhchhhhhhhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcc
Q 013289 93 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 168 (446)
Q Consensus 93 ~~~~~~~v~~~~~~~r~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~ 168 (446)
|=+.|+.|.....+.+.+...++. .+.|..++++|++|.||||+++.|++.+.+
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~----------------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQ----------------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHh----------------------CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456777777666655544333321 245789999999999999999999998753
No 396
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.74 E-value=0.01 Score=61.09 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
-|++.|+||+||||+++.+++.++| ....|+.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~-----~~~rV~~~ 98 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNW-----PCVRVNLD 98 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCC-----CeEEEEec
Confidence 3889999999999999999999875 45566544
No 397
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.74 E-value=0.0081 Score=57.71 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.|.|+|||||||+.+.|+..+. -.+..|.+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~ 66 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDL 66 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCcceEEECCEec
Confidence 5678999999999999999999986520 012346677776544
No 398
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.74 E-value=0.014 Score=56.17 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+.++++.|+|||||||++.+++... ...+..+.+++.+.-
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC
Confidence 457899999999999999999986542 123467888987653
No 399
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.74 E-value=0.023 Score=57.73 Aligned_cols=26 Identities=31% Similarity=0.232 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
|.-+++.||||+||||+++.++..++
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhC
Confidence 45678999999999999999999975
No 400
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.01 Score=55.68 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+++.=|+++|+||+||||++..++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 456779999999999999999988765
No 401
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.72 E-value=0.013 Score=55.07 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....++.+.|+|||||||+.+.|+... .+..|.+.++...
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~ 71 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL---EAEEGKIEIDGID 71 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCeEEECCEE
Confidence 557899999999999999999998653 2334566776543
No 402
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=95.72 E-value=0.28 Score=48.27 Aligned_cols=157 Identities=17% Similarity=0.105 Sum_probs=88.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
+.|+||++-|..||||+.+.+.|...+. +....|. .|. .|.+ .+..| ..++.
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lD-----PRg~~v~--~~~-------------~pt~----eE~~~----p~lwR 80 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLN-----PRGARVV--ALP-------------KPSD----RERTQ----WYFQR 80 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcC-----CCeeEEE--eCC-------------CCCH----HHHcC----hHHHH
Confidence 4599999999999999999999998863 2333332 121 0111 01111 12222
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.-...=..|.-.|+|.+.-....++.+ | |.. +....+..+..+. ..++.....
T Consensus 81 fw~~lP~~G~i~IF~rSwY~~~lv~rv-------~--------~~~---~~~~~~~~~~~I~---------~FEr~L~~~ 133 (230)
T TIGR03707 81 YVQHLPAAGEIVLFDRSWYNRAGVERV-------M--------GFC---TDEEYEEFLRQVP---------EFERMLVRD 133 (230)
T ss_pred HHHhCCCCCeEEEEeCchhhhHHHHHh-------c--------CCC---CHHHHHHHHHHHH---------HHHHHHHHC
Confidence 334444578889999876554333222 1 110 0011122222222 223446689
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhhhcC--cccchhh--hhhHHHHHHHhHHHhhc
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAIMMK--RAVRVNS--QLKSHKRFANAFRNYCE 351 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~~gG--R~Vpv~~--ql~r~~rf~~~~~~~~~ 351 (446)
|+.|.=++++.+.+++.+|...|-..-. -.+.... ....|.++.+.+..+..
T Consensus 134 G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd~y~~a~e~~l~ 189 (230)
T TIGR03707 134 GIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDRWDDYSRAKDEMFA 189 (230)
T ss_pred CCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 9988889999999999999999875322 1222111 23345555555555544
No 403
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.72 E-value=0.015 Score=55.51 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++++.|+||+||||++.+++.+. ...+..+++++.+.-
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 457899999999999999999876542 123456788887554
No 404
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.72 E-value=0.0082 Score=58.30 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc-c-CCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW-S-GAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~-~-~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..... . .+..|.+.++.-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 56789999999999999999999864210 0 01235667765433
No 405
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.012 Score=58.57 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=34.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-..+.++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~---~p~~G~i~~~g~~i 71 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL---LPEAGTITVGGMVL 71 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 33333567899999999999999999998654 34556778877555
No 406
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.71 E-value=0.016 Score=58.84 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...++-|.|+|||||||+...+...+. ...+..+|..|.-
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~---~~~~~~VI~gD~~ 142 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLK---DSVPCAVIEGDQQ 142 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc---cCCCEEEECCCcC
Confidence 4568999999999999999999888752 1235777876643
No 407
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.70 E-value=0.0091 Score=56.31 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIM 163 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La 163 (446)
.+++++|||||||||+.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 699999999999999999987
No 408
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.0087 Score=56.00 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+.... ..+..+-+.++...+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~G~i~~~g~~~ 73 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKT-AGVITGEILINGRPL 73 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEEECCEeh
Confidence 5578999999999999999999985321 012345667765443
No 409
>PRK05973 replicative DNA helicase; Provisional
Probab=95.69 E-value=0.014 Score=57.61 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....+++|+|+||+||||++-+++... ...+..+++++.++=
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes 103 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC
Confidence 345799999999999999999987753 123455778876543
No 410
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.69 E-value=0.017 Score=55.10 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc----ccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF----WSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~----~~~~~~~~vvIdaD~ 182 (446)
+...++.+.|+|||||||++.+++...- |.+...++++|+.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 4568999999999999999999875421 111125688888765
No 411
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.68 E-value=0.012 Score=57.37 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=32.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-..+.++.+.|+|||||||+++.|+..+. +..|.+.++...+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~ 69 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTI 69 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEc
Confidence 35678999999999999999999987642 3346677776444
No 412
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.67 E-value=0.013 Score=55.77 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
...-++.+.|+|||||||+.+.|+..+ .+..|.+.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~~~~ 63 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGIL---RPTSGEIIFDGHP 63 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEe
Confidence 457799999999999999999998754 2334566666433
No 413
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.67 E-value=0.014 Score=55.04 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~ 64 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS---PPLAGRVLLNGGPL 64 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEec
Confidence 567899999999999999999998754 23445677765444
No 414
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.67 E-value=0.013 Score=57.55 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
...++.+.|+|||||||+.+.|+... .+..|.+.++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~---~p~~G~i~~~g 60 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL---KPDEGDIEIEL 60 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---cCCCCeEEECC
Confidence 46799999999999999999998654 23345555554
No 415
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.67 E-value=0.015 Score=53.54 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+.+.+|++.|.-||||||+++.+++.++
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 5678999999999999999999999985
No 416
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.67 E-value=0.013 Score=56.54 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~i~g~~~ 64 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE---QPDSGRIRLNGQDA 64 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEc
Confidence 457899999999999999999998654 23345677765544
No 417
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.66 E-value=0.059 Score=56.94 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=36.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
.+.++.+.||.|+||||....|+.++..........+|..|.+|
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 47899999999999999999998886533445678999999997
No 418
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.66 E-value=0.013 Score=57.89 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=34.5
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+...-..+.++.|.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~sG~i~~~g~~~ 76 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE---SPSQGNVSWRGEPL 76 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEec
Confidence 3444444567899999999999999999998653 23456677776544
No 419
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.66 E-value=0.012 Score=58.60 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++.-
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~ 73 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI---ISETGQTIVGDY 73 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCE
Confidence 557899999999999999999998754 233456666643
No 420
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.66 E-value=0.0092 Score=57.83 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhccc--CCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~--~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..+.-. .+..|.+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 72 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI 72 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEEC
Confidence 567899999999999999999998653100 01245667765444
No 421
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.014 Score=52.48 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|...+. +..+.+.++...+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~ 63 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDI 63 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEc
Confidence 4457999999999999999999987642 3345566765444
No 422
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.64 E-value=0.0097 Score=64.79 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
..+++++||+||||||..+.|+++++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45999999999999999999999986
No 423
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.64 E-value=0.014 Score=56.95 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc-cCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW-SGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~-~~~~~~~vvIdaD~i 183 (446)
..+-++.+.|+|||||||+++.|+..... ..+..|.+.++...+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV 71 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec
Confidence 45789999999999999999999875420 000346677765444
No 424
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.63 E-value=0.013 Score=57.18 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+-++.+.|+|||||||+.+.|+..+. +..|.+.++...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 66 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPI 66 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEh
Confidence 5678999999999999999999987542 3445677765443
No 425
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.63 E-value=0.012 Score=56.57 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV 188 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~ 188 (446)
....++.|.||+||||||+...++.- ..|..+.+.||..+...+.|
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF---~~P~~G~i~i~g~d~t~~~P 68 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGF---ETPASGEILINGVDHTASPP 68 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhc---cCCCCceEEEcCeecCcCCc
Confidence 44678999999999999999999753 45677889999877754433
No 426
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.018 Score=59.53 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+-|..+++.||+|+||||+|+.+++.+.
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3477899999999999999999999874
No 427
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.62 E-value=0.01 Score=50.14 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l 166 (446)
|+|.|++||||||+.+.|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998763
No 428
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.62 E-value=0.013 Score=58.93 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=33.4
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 22 ~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 68 (303)
T TIGR01288 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMI---SPDRGKITVLGEPV 68 (303)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 333333567899999999999999999998653 23445667765433
No 429
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.2 Score=56.29 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 168 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~ 168 (446)
+-|..+++.||+|+||||+|+.+++.+.+
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44789999999999999999999998753
No 430
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.62 E-value=0.031 Score=60.55 Aligned_cols=38 Identities=26% Similarity=0.279 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+.|.-+++.||||+|||++|+.++.+++ -....++...
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~-----~~~~~l~~~~ 294 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQ-----LPLLRLDVGK 294 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEEhHH
Confidence 4578899999999999999999999874 2445555433
No 431
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.61 E-value=0.012 Score=62.65 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.|.-|+|.||||+||||+++.|++.++
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467789999999999999999999874
No 432
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.61 E-value=0.049 Score=56.07 Aligned_cols=100 Identities=27% Similarity=0.299 Sum_probs=52.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 221 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li 221 (446)
.-+++++||+||||||+.+.+...+. .+..+.++.-.|.+ +. ..+.... ...+ .+. ... .......+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~tiEdp~-E~------~~~~~~~-~i~q-~ev-g~~-~~~~~~~l 188 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIITIEDPI-EY------VHRNKRS-LINQ-REV-GLD-TLSFANAL 188 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEEEcCCh-hh------hccCccc-eEEc-ccc-CCC-CcCHHHHH
Confidence 46899999999999999999887642 11123333333332 11 0000000 0000 000 000 01123356
Q ss_pred HHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcc
Q 013289 222 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVH 254 (446)
Q Consensus 222 ~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h 254 (446)
..+|..+-++|+=+-...+.-....+..+...|
T Consensus 189 ~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh 221 (343)
T TIGR01420 189 RAALREDPDVILIGEMRDLETVELALTAAETGH 221 (343)
T ss_pred HHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 678888888888666667666665555554433
No 433
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.60 E-value=0.011 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
...|++.|++||||||+...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998764
No 434
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.59 E-value=0.014 Score=56.96 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=34.3
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-..+.++.|.|+|||||||+.+.|+..+ .+..|-+.++...+
T Consensus 19 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~ 65 (256)
T TIGR03873 19 GVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL---RPDAGTVDLAGVDL 65 (256)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCEEc
Confidence 333333567899999999999999999998754 23456677776544
No 435
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.59 E-value=0.025 Score=58.78 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 105 KMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 105 ~~~r~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
....+...||+-++..|. ....+..++++.||.|+||||+++.|...+
T Consensus 65 G~~~~i~~lV~~fk~AA~--------------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 65 GMEETIERLVNYFKSAAQ--------------GLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CcHHHHHHHHHHHHHHHh--------------ccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 356788889998888885 122456899999999999999999998876
No 436
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.59 E-value=0.015 Score=57.47 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
+++.|+||+||||+|+.++..++ ..+..++..
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~ 55 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGD 55 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCC
Confidence 45789999999999999998764 356777654
No 437
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.57 E-value=0.014 Score=57.91 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=34.6
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.-.-..+.++.|.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~i~g~~i 74 (280)
T PRK13633 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL---IPSEGKVYVDGLDT 74 (280)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEec
Confidence 333333567899999999999999999998654 23456778876554
No 438
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.57 E-value=0.014 Score=57.29 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 75 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLE---KPAQGTVSFRGQDL 75 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEc
Confidence 567899999999999999999998754 23456677775444
No 439
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.56 E-value=0.012 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.=+++.||||+||||+|+.+++.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4457889999999999999998764
No 440
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.56 E-value=0.0096 Score=58.86 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHH---HHhhcccCCCCCeEEEeCcc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDI---MKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~L---a~~l~~~~~~~~~vvIdaD~ 182 (446)
|.--++.|||||||||..... .... +....+||.|-
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~-----gr~~~vVNLDP 40 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAI-----GRPVAVVNLDP 40 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHh-----CCceEEEecCC
Confidence 456789999999999998554 4444 34567888764
No 441
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.56 E-value=0.01 Score=58.10 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhccc--CCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~--~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+... .+..|.+.++...+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 567899999999999999999998653100 01235667765443
No 442
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.55 E-value=0.015 Score=57.75 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=34.2
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-..+-++.+.|+|||||||+.+.|+..+ .+..|.+.++.-.+
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 68 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL---KPTSGSVLIRGEPI 68 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 333333567899999999999999999998654 23456677765444
No 443
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.55 E-value=0.014 Score=53.46 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
++.++|++||||||++..|...+- ..+-...+|..|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~--~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK--ARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecc
Confidence 478899999999999999988752 222245666544
No 444
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.54 E-value=0.016 Score=56.79 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=32.2
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..-+..-++.|.||+||||||+...+..- ..+..+.+.|+.-+
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~l---d~pt~G~v~i~g~d 68 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGL---DKPTSGEVLINGKD 68 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc---cCCCCceEEECCEE
Confidence 33356789999999999999999988643 24456777887633
No 445
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.54 E-value=0.015 Score=57.08 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=30.3
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
.+...-..+.++.+.|+|||||||+.+.|+..+ .+..|.+.++
T Consensus 22 ~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~---~p~~G~i~~~ 64 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV---APDEGVIKRN 64 (251)
T ss_pred eEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEEC
Confidence 333333567899999999999999999998653 2233445554
No 446
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.015 Score=58.14 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
....++.|.|+|||||||+.+.|+.-+ .+..|.+.++...+.
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~ 72 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLL---KPTSGKIIIDGVDIT 72 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC---CCCccEEEECCEECC
Confidence 567899999999999999999998653 344567778765553
No 447
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.53 E-value=0.013 Score=58.20 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCC--------CCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA--------TNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~--------~~~vvIdaD~i 183 (446)
-..+.++.+.|+|||||||+.+.|+..+. +. .|.+.++...+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 35678999999999999999999987542 22 35677776554
No 448
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.015 Score=57.64 Aligned_cols=44 Identities=27% Similarity=0.139 Sum_probs=33.5
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-....++.+.|+|||||||+.+.|+.-+ .+..|.+.++...+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 69 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIY---LPQRGRVKVMGREV 69 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 333567899999999999999999998654 23456777776555
No 449
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.53 E-value=0.012 Score=61.49 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..|.-+++.||||+|||++|+.++..++ ..++.++...
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v~~~~ 200 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVGSE 200 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhC-----CCEEEeehHH
Confidence 4577799999999999999999999864 2455555433
No 450
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.52 E-value=0.011 Score=57.35 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=31.9
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcc--cCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFW--SGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~--~~~~~~~vvIdaD~i 183 (446)
..-..+.++.+.|+|||||||+.+.|+.-..- ..+..|.+.++...+
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 33356789999999999999999999854210 001235677775444
No 451
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.52 E-value=0.014 Score=58.42 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+++.||+|+||||+++.+++.+.-.....+.+.+|+.++
T Consensus 39 lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 679999999999999999887631110124567776554
No 452
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.52 E-value=0.017 Score=60.10 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=35.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
-+..-++.+-|||||||||+.+.|+.- ..+..|.+.|+.-++..
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGf---e~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGF---EQPSSGEILLDGEDITD 71 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEECCEECCC
Confidence 355678999999999999999999853 45667788888777643
No 453
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.52 E-value=0.018 Score=57.04 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=37.1
Q ss_pred ccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 131 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 131 ~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+-..+...-...-++-+.|||||||||+.+.++.- ..+..|.+.++...+
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL---~~p~~G~V~~~g~~v 67 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL---EKPTSGEVLLDGRPV 67 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEECCccc
Confidence 33444444466789999999999999999999864 245567788877655
No 454
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.51 E-value=0.016 Score=57.67 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+.-+ .+..|.++++.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 71 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLL---EAESGQIIIDGDLL 71 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 557899999999999999999998653 34456777776554
No 455
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.51 E-value=0.014 Score=57.32 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+. +..|.+.++...+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~ 71 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHI 71 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEh
Confidence 4578999999999999999999987642 3345677765443
No 456
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.50 E-value=0.017 Score=55.23 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+..+++.|++|+|||++++.++.... ..+..+.++++..+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~~~~~i~~~~~ 81 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS--YGGRNARYLDAASP 81 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEehHHh
Confidence 45678999999999999999987642 22346788887655
No 457
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.50 E-value=0.019 Score=53.58 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..++++||+|+|||.+++.|++.++. +.....+.+|.-.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 36899999999999999999998741 2233577788766643
No 458
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.011 Score=57.63 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhccc--CCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~--~~~~~~vvIdaD~ 182 (446)
..+.++.|.|+|||||||+.+.|+....-. .+..|.+.++.-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~ 72 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGED 72 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEe
Confidence 557899999999999999999998753100 0124566776533
No 459
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.011 Score=55.90 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-..+.++.+.|+|||||||+.+.|+....-..+..|.+.++...+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~ 74 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEEC
Confidence 356789999999999999999999875410002345667765443
No 460
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.47 E-value=0.012 Score=56.62 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIM 163 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La 163 (446)
+.+++++||||+||||+.+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4899999999999999999987
No 461
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.02 Score=54.51 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=32.2
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
.+..+-+..-++++.||+||||||+.+.|-..+. +..+-+.|.
T Consensus 29 ~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~ 71 (235)
T COG4778 29 NVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVR 71 (235)
T ss_pred ceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEE
Confidence 3344446678999999999999999999988863 344555554
No 462
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.015 Score=59.74 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=33.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-+...++.+.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~---~p~~G~I~~~g~~i 69 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLE---RPTSGRVLVDGQDL 69 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 33333567899999999999999999998754 23456677775444
No 463
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.016 Score=57.76 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...-++.+.|+|||||||+.+.|+..+ .+..|-+.++.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~---~p~~G~i~~~g~~i 71 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL---KPTTGTVTVDDITI 71 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 557899999999999999999998654 34456677775443
No 464
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.47 E-value=0.017 Score=62.18 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++++.|+|||||||++.+++.+- ....+..+++|+.++-
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g-~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNG-IIHFDEPGVFVTFEES 61 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH-HHhCCCCEEEEEEecC
Confidence 457899999999999999999986541 1112467899987754
No 465
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.46 E-value=0.037 Score=58.39 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
..|.-+++.||||+||||+++.++..++
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578899999999999999999999863
No 466
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.017 Score=57.34 Aligned_cols=46 Identities=20% Similarity=0.119 Sum_probs=34.3
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-...-++.|.|+|||||||+.+.|+..+ .+..|.+.++...+
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 66 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLL---RPQKGKVLVSGIDT 66 (274)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEC
Confidence 33333567899999999999999999998754 23456677776555
No 467
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.46 E-value=0.014 Score=62.77 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+....+.+.|++||||||+++.|..-+ .+..|.+.+|.-++
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~i~g~~i 399 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL---DPLQGEVTLDGVSV 399 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEh
Confidence 456789999999999999999998654 34567788886555
No 468
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.45 E-value=0.012 Score=57.13 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhccc--CCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~--~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+..+.-. .+..|-+.++...+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 457899999999999999999998653100 00135677765444
No 469
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.45 E-value=0.012 Score=55.77 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~ 165 (446)
++.|.|+|||||||+.+.+.--
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999998654
No 470
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.44 E-value=0.014 Score=54.09 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=19.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.+.+|.||||+||||++..+...+
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHh
Confidence 4489999999999999887777664
No 471
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.13 Score=56.84 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.=+++.||||+|||.+|++++.+++ -.+.-|++-++
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~-----vPf~~isApei 259 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELG-----VPFLSISAPEI 259 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcC-----CceEeecchhh
Confidence 4578899999999999999999999985 24444555444
No 472
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.016 Score=57.32 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=34.2
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.-.-..+-++.+.|+|||||||+.+.|+..+ .+..|.+.++.-.+
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~ 66 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL---KPTSGEVLIKGEPI 66 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEC
Confidence 333333567899999999999999999998653 23456677776544
No 473
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.43 E-value=0.032 Score=60.08 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.-+++.||||+||||+++.++...+ ..++.++...+
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~~i~~~~~ 124 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGSDF 124 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCeeeccHHHH
Confidence 3466799999999999999999998864 23455554443
No 474
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.013 Score=56.92 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccC--CCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG--AATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~--~~~~~vvIdaD~i 183 (446)
..+-++.+.|+|||||||+.+.|+....-.. +..|-+.++.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI 73 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence 4578999999999999999999986531000 1235566665333
No 475
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.013 Score=57.71 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccC--CCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG--AATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~--~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+....... +..|.+.++...+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 4567999999999999999999986421000 1235677765444
No 476
>PRK05642 DNA replication initiation factor; Validated
Probab=95.41 E-value=0.061 Score=52.33 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHH-HHHHhcCCCC-ChhhhHHHHHHHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI-YRALSSKGHH-DDMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~i-rk~L~~~g~~-~d~~~~ae~v~~ea~~~a~~l 220 (446)
..+++.|++|+|||.++..++..+. ..+..+++++++++....+. .+.+...+.- -|..+.-.. ..........+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~-~~~~~~~Lf~l 122 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAG-KADWEEALFHL 122 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcC-ChHHHHHHHHH
Confidence 4578999999999999999876531 22356889998877432111 1112111000 011110000 00111223446
Q ss_pred HHHHHhCCCcEEEeCcCCC
Q 013289 221 LVTALNEGRDVIMDGTLSW 239 (446)
Q Consensus 221 i~~aL~~G~sVViD~T~s~ 239 (446)
+......|+.+|+-++...
T Consensus 123 ~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 123 FNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred HHHHHhcCCEEEEeCCCCH
Confidence 6667778888888777554
No 477
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.41 E-value=0.013 Score=57.03 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..+-++.+.|+|||||||+.+.|+.-
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 55789999999999999999999853
No 478
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.40 E-value=0.012 Score=61.13 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.-+++++||+||||||+.+.|...+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998764
No 479
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.02 Score=62.55 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.+.+|.|.|++|+||||++..|+..+-....+....+|+.|.++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 467888999999999999999887531111123578899998763
No 480
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.40 E-value=0.013 Score=56.83 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC---CCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA---ATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~---~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+..... .+ ..|.+.++...+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRMNDL-NPEVTITGSIVYNGHNI 74 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccccc-CCCCCccceEEECCEEC
Confidence 45789999999999999999999754100 01 135566765443
No 481
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.40 E-value=0.035 Score=62.68 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.-+++.||||+|||++++.++..++ .++..|++.++
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~-----~~fi~v~~~~l 523 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESG-----ANFIAVRGPEI 523 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEehHHH
Confidence 3467789999999999999999999874 35666654433
No 482
>PRK04328 hypothetical protein; Provisional
Probab=95.39 E-value=0.021 Score=56.04 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++++.|+|||||||++.+++.+. . ..+..+++|+.++-
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 457899999999999999999877652 1 23466889987664
No 483
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.013 Score=56.90 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc--cCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW--SGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~--~~~~~~~vvIdaD~i 183 (446)
..+-++.|.|+|||||||+.+.|+..... ..+..|-+.++...+
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 74 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEeh
Confidence 56789999999999999999999865310 001235566665443
No 484
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.015 Score=58.03 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=36.6
Q ss_pred ccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 131 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 131 ~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...+...-..+-++.|.|+|||||||+.+.|+..+ .+..|.+.++.-.+
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i 70 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL---QPTEGKVTVGDIVV 70 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 334444545667899999999999999999998754 24456777775444
No 485
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.39 E-value=0.013 Score=57.25 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.|-+..|.|+|||||||+.+.|.--++
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 477899999999999999999987664
No 486
>PLN03025 replication factor C subunit; Provisional
Probab=95.39 E-value=0.052 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.|. +++.||||+||||++..+++.+
T Consensus 34 ~~~-lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 34 MPN-LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred Cce-EEEECCCCCCHHHHHHHHHHHH
Confidence 355 5689999999999999999886
No 487
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.013 Score=56.96 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC--CCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~--~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+.-.+...+ ..|.+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEec
Confidence 55789999999999999999999753110011 135677765444
No 488
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.013 Score=56.96 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc--ccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF--WSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~--~~~~~~~~vvIdaD~i 183 (446)
..+-++.+.|+|||||||+.+.|+..+. ...+..+-+.++.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 73 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEc
Confidence 5578999999999999999999987531 0001135567765443
No 489
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.012 Score=57.00 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.5
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+...-..+.++.|.|+|||||||+.+.|+..
T Consensus 23 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 23 GIDLDFNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33333356789999999999999999999763
No 490
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.38 E-value=0.013 Score=57.24 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
....++.+.|+|||||||+.+.|+..+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999998653
No 491
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.38 E-value=0.017 Score=57.20 Aligned_cols=46 Identities=20% Similarity=0.086 Sum_probs=32.7
Q ss_pred cccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 132 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 132 ~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
...+...-..+-++.+.|+|||||||+.+.|+..+. +..|.+.++.
T Consensus 40 l~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g 85 (264)
T PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNG 85 (264)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECC
Confidence 344444446678999999999999999999987642 2344555543
No 492
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.38 E-value=0.017 Score=62.51 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccch
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD 187 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d 187 (446)
.-.+.|.||+||||||+++.|..- | .+..+.+.+|.-+++.-|
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~--w-~p~~G~VRLDga~l~qWd 404 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGI--W-PPTSGSVRLDGADLRQWD 404 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcc--c-ccCCCcEEecchhhhcCC
Confidence 456789999999999999999865 3 345678999987776554
No 493
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.37 E-value=0.018 Score=59.43 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+... .+..|.+.++...+
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~---~p~~G~I~~~g~~i 61 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLT---RPDEGEIVLNGRTL 61 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 456799999999999999999998754 23445677765444
No 494
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.36 E-value=0.04 Score=62.20 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.-+++.||||+||||+++.++..++ ..++.|+..++
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~-----~~~i~i~~~~i 248 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFISINGPEI 248 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEecHHH
Confidence 4467899999999999999999999874 34566665443
No 495
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.019 Score=55.36 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+-++.+.|+|||||||+.+.|+..+ .+..|.++++...+
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~---~p~~G~v~i~g~~~ 63 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFI---KPDSGKILLNGKDI 63 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCEEc
Confidence 456899999999999999999997654 23456677776444
No 496
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.36 E-value=0.014 Score=56.78 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc--cCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW--SGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~--~~~~~~~vvIdaD~i 183 (446)
..+-++.+.|+|||||||+.+.|+....- ..+..|.+.++...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence 56789999999999999999999864310 000235677765444
No 497
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.36 E-value=0.014 Score=56.61 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
-...-++.|.|+|||||||+++.|+...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3567899999999999999999998653
No 498
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.019 Score=56.30 Aligned_cols=37 Identities=35% Similarity=0.418 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
+..-+..|-|||||||||+.+.|..++. +..+-+.++
T Consensus 25 ~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~ 61 (259)
T COG4559 25 RPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLN 61 (259)
T ss_pred cCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeC
Confidence 4467899999999999999999988762 344455554
No 499
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.014 Score=56.63 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc--cCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW--SGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~--~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+.+.|+.-..- ..+..|.+.++...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 56789999999999999999999863210 000135677765443
No 500
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.34 E-value=0.014 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
....++++|++||||||+.+.+...+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred cceEEEEECCCccccchHHHHHhhhcc
Confidence 358999999999999999999998764
Done!