Query 013289
Match_columns 446
No_of_seqs 296 out of 1557
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 07:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gvn_B Zeta; postsegregational 99.8 1.8E-17 6.3E-22 162.9 18.2 169 139-362 30-207 (287)
2 1ly1_A Polynucleotide kinase; 99.6 4.2E-15 1.4E-19 132.2 13.9 175 141-389 1-181 (181)
3 2p5t_B PEZT; postsegregational 99.6 6.2E-14 2.1E-18 134.4 19.0 167 139-360 29-204 (253)
4 1ltq_A Polynucleotide kinase; 99.5 4.2E-13 1.4E-17 130.2 17.1 195 141-408 1-201 (301)
5 2rhm_A Putative kinase; P-loop 99.4 3.3E-12 1.1E-16 115.0 13.8 129 140-328 3-131 (193)
6 3zvl_A Bifunctional polynucleo 99.4 2.5E-12 8.4E-17 132.6 13.8 115 140-335 256-372 (416)
7 1tev_A UMP-CMP kinase; ploop, 99.3 1.8E-10 6.1E-15 103.2 21.2 146 141-345 2-158 (196)
8 1knq_A Gluconate kinase; ALFA/ 99.3 8.9E-11 3E-15 104.8 17.3 120 140-323 6-125 (175)
9 1qf9_A UMP/CMP kinase, protein 99.3 3.7E-10 1.3E-14 100.9 19.5 37 140-183 4-40 (194)
10 3t61_A Gluconokinase; PSI-biol 99.3 7.2E-11 2.5E-15 108.2 14.7 118 140-324 16-133 (202)
11 1ukz_A Uridylate kinase; trans 99.2 5E-10 1.7E-14 102.2 19.5 162 139-362 12-185 (203)
12 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 9E-11 3.1E-15 112.9 15.2 132 141-340 3-134 (260)
13 1qhx_A CPT, protein (chloramph 99.2 6.1E-11 2.1E-15 105.7 12.2 127 141-323 2-134 (178)
14 2c95_A Adenylate kinase 1; tra 99.2 5.3E-10 1.8E-14 100.8 17.2 37 140-183 7-43 (196)
15 2axn_A 6-phosphofructo-2-kinas 99.2 2.9E-10 9.8E-15 120.8 17.8 132 140-325 33-171 (520)
16 4eun_A Thermoresistant glucoki 99.2 3.9E-10 1.3E-14 103.6 15.7 121 140-324 27-147 (200)
17 2vli_A Antibiotic resistance p 99.2 1.1E-10 3.9E-15 104.2 11.4 121 141-323 4-126 (183)
18 3lw7_A Adenylate kinase relate 99.2 1E-09 3.5E-14 95.7 16.1 150 143-356 2-156 (179)
19 3cm0_A Adenylate kinase; ATP-b 99.1 7.3E-10 2.5E-14 99.4 15.0 36 141-183 3-38 (186)
20 2bwj_A Adenylate kinase 5; pho 99.1 3.8E-10 1.3E-14 101.9 12.8 37 140-183 10-46 (199)
21 3fb4_A Adenylate kinase; psych 99.0 3E-09 1E-13 98.0 14.8 33 144-183 2-34 (216)
22 2yvu_A Probable adenylyl-sulfa 99.0 2.5E-09 8.5E-14 96.6 12.8 91 140-244 11-101 (186)
23 3dl0_A Adenylate kinase; phosp 99.0 3E-09 1E-13 98.2 13.5 33 144-183 2-34 (216)
24 2cdn_A Adenylate kinase; phosp 99.0 1.2E-08 4.1E-13 93.2 15.5 37 140-183 18-54 (201)
25 2f6r_A COA synthase, bifunctio 98.9 1.2E-08 4.2E-13 99.5 15.1 36 140-183 73-108 (281)
26 3kb2_A SPBC2 prophage-derived 98.9 4E-08 1.4E-12 86.3 16.8 34 143-183 2-35 (173)
27 2pbr_A DTMP kinase, thymidylat 98.9 6E-08 2.1E-12 86.8 17.9 87 144-236 2-91 (195)
28 4i1u_A Dephospho-COA kinase; s 98.9 3.6E-09 1.2E-13 100.3 9.6 129 140-323 7-153 (210)
29 3tlx_A Adenylate kinase 2; str 98.9 2E-08 6.9E-13 95.6 14.8 37 140-183 27-63 (243)
30 3trf_A Shikimate kinase, SK; a 98.9 3.3E-08 1.1E-12 88.6 14.2 37 141-184 4-40 (185)
31 2qor_A Guanylate kinase; phosp 98.8 2.3E-09 7.8E-14 98.8 5.4 28 139-166 9-36 (204)
32 2ze6_A Isopentenyl transferase 98.8 1.6E-08 5.3E-13 97.2 11.4 35 143-184 2-36 (253)
33 2pt5_A Shikimate kinase, SK; a 98.8 4.2E-08 1.4E-12 86.4 13.2 33 144-183 2-34 (168)
34 2bdt_A BH3686; alpha-beta prot 98.8 9E-08 3.1E-12 86.4 15.5 123 142-324 2-124 (189)
35 3uie_A Adenylyl-sulfate kinase 98.8 2.8E-08 9.6E-13 91.1 12.4 93 140-246 23-115 (200)
36 3vaa_A Shikimate kinase, SK; s 98.8 1.2E-07 4E-12 86.9 16.3 37 140-183 23-59 (199)
37 3umf_A Adenylate kinase; rossm 98.8 4.5E-08 1.5E-12 93.0 13.9 37 140-183 27-63 (217)
38 1aky_A Adenylate kinase; ATP:A 98.8 3.5E-08 1.2E-12 91.5 12.9 37 140-183 2-38 (220)
39 1e6c_A Shikimate kinase; phosp 98.8 1E-07 3.5E-12 84.1 15.1 34 143-183 3-36 (173)
40 1m7g_A Adenylylsulfate kinase; 98.8 3.4E-08 1.1E-12 91.3 12.2 84 140-236 23-106 (211)
41 2xb4_A Adenylate kinase; ATP-b 98.8 5.8E-08 2E-12 90.9 13.7 33 144-183 2-34 (223)
42 2plr_A DTMP kinase, probable t 98.8 4.1E-07 1.4E-11 82.4 18.0 27 141-167 3-29 (213)
43 3be4_A Adenylate kinase; malar 98.8 1.6E-07 5.3E-12 87.3 15.5 35 142-183 5-39 (217)
44 1jjv_A Dephospho-COA kinase; P 98.8 3.2E-08 1.1E-12 90.5 10.5 34 142-183 2-35 (206)
45 1bif_A 6-phosphofructo-2-kinas 98.7 2.5E-07 8.4E-12 96.4 17.2 103 140-250 37-145 (469)
46 1kht_A Adenylate kinase; phosp 98.7 7.2E-08 2.5E-12 86.0 11.3 40 142-183 3-42 (192)
47 4gp7_A Metallophosphoesterase; 98.7 2.1E-07 7.3E-12 83.7 14.0 151 140-362 7-157 (171)
48 2z0h_A DTMP kinase, thymidylat 98.7 4.8E-07 1.6E-11 81.3 16.4 23 144-166 2-24 (197)
49 2iyv_A Shikimate kinase, SK; t 98.7 5.1E-08 1.7E-12 87.5 9.6 35 142-183 2-36 (184)
50 1nks_A Adenylate kinase; therm 98.7 3.6E-07 1.2E-11 81.4 14.7 87 143-236 2-93 (194)
51 1zak_A Adenylate kinase; ATP:A 98.7 2.9E-07 9.8E-12 85.4 13.9 36 141-183 4-39 (222)
52 3sr0_A Adenylate kinase; phosp 98.7 3E-07 1E-11 86.3 14.2 82 144-239 2-86 (206)
53 1zd8_A GTP:AMP phosphotransfer 98.7 2.8E-07 9.7E-12 85.9 13.8 37 140-183 5-41 (227)
54 1uj2_A Uridine-cytidine kinase 98.6 1.2E-06 4E-11 83.4 17.4 46 139-184 19-67 (252)
55 1ak2_A Adenylate kinase isoenz 98.6 3.9E-07 1.3E-11 85.6 13.6 44 132-183 7-50 (233)
56 2wwf_A Thymidilate kinase, put 98.6 1E-07 3.5E-12 86.9 9.1 28 140-167 8-35 (212)
57 1nn5_A Similar to deoxythymidy 98.6 2.8E-07 9.6E-12 84.0 11.9 28 140-167 7-34 (215)
58 2pez_A Bifunctional 3'-phospho 98.6 3.6E-07 1.2E-11 81.8 12.3 43 140-184 3-45 (179)
59 4eaq_A DTMP kinase, thymidylat 98.6 9.9E-07 3.4E-11 83.6 15.7 28 140-167 24-51 (229)
60 2grj_A Dephospho-COA kinase; T 98.6 8.9E-08 3.1E-12 88.9 8.1 38 140-184 10-47 (192)
61 1x6v_B Bifunctional 3'-phospho 98.6 4.1E-07 1.4E-11 98.8 14.4 119 140-321 50-171 (630)
62 1e4v_A Adenylate kinase; trans 98.6 5.3E-07 1.8E-11 83.3 13.2 33 144-183 2-34 (214)
63 1y63_A LMAJ004144AAA protein; 98.6 2.1E-07 7.1E-12 84.3 9.8 42 135-183 3-45 (184)
64 1kag_A SKI, shikimate kinase I 98.6 2.7E-07 9.3E-12 81.6 10.3 36 141-183 3-38 (173)
65 1vht_A Dephospho-COA kinase; s 98.6 7E-07 2.4E-11 82.4 13.4 35 141-183 3-37 (218)
66 3iij_A Coilin-interacting nucl 98.5 4.4E-07 1.5E-11 81.1 10.9 37 140-183 9-45 (180)
67 1m8p_A Sulfate adenylyltransfe 98.5 7.4E-07 2.5E-11 95.7 14.4 93 140-245 394-486 (573)
68 4edh_A DTMP kinase, thymidylat 98.5 5.5E-06 1.9E-10 78.0 18.5 91 140-235 4-99 (213)
69 2qt1_A Nicotinamide riboside k 98.5 1.3E-06 4.4E-11 80.0 13.4 39 140-184 19-57 (207)
70 1zp6_A Hypothetical protein AT 98.5 1.6E-06 5.6E-11 77.7 13.3 39 140-183 7-45 (191)
71 3lv8_A DTMP kinase, thymidylat 98.5 7E-06 2.4E-10 78.7 18.4 94 139-234 24-121 (236)
72 3r20_A Cytidylate kinase; stru 98.5 1.7E-06 5.7E-11 83.1 13.6 37 140-183 7-43 (233)
73 1zuh_A Shikimate kinase; alpha 98.4 1.2E-06 4.1E-11 77.4 11.1 35 142-183 7-41 (168)
74 2gks_A Bifunctional SAT/APS ki 98.4 8.9E-07 3.1E-11 94.6 12.0 91 140-244 370-460 (546)
75 1uf9_A TT1252 protein; P-loop, 98.4 6.9E-07 2.4E-11 80.6 9.5 36 140-183 6-41 (203)
76 1via_A Shikimate kinase; struc 98.4 2.1E-06 7.3E-11 76.4 12.1 33 144-183 6-38 (175)
77 4tmk_A Protein (thymidylate ki 98.4 2.8E-05 9.5E-10 73.3 20.2 27 141-167 2-28 (213)
78 1cke_A CK, MSSA, protein (cyti 98.4 2.8E-06 9.7E-11 78.2 12.8 35 142-183 5-39 (227)
79 2jaq_A Deoxyguanosine kinase; 98.4 9.5E-06 3.2E-10 72.9 15.5 24 144-167 2-25 (205)
80 3gmt_A Adenylate kinase; ssgci 98.4 3.4E-06 1.2E-10 81.0 13.2 35 142-183 8-42 (230)
81 2h92_A Cytidylate kinase; ross 98.4 4.7E-06 1.6E-10 76.6 13.5 36 141-183 2-37 (219)
82 4hlc_A DTMP kinase, thymidylat 98.3 5.5E-05 1.9E-09 70.6 20.0 90 141-235 1-92 (205)
83 2if2_A Dephospho-COA kinase; a 98.3 2.1E-06 7.2E-11 78.1 10.1 33 143-183 2-34 (204)
84 1rz3_A Hypothetical protein rb 98.3 3.6E-06 1.2E-10 77.3 11.1 44 140-185 20-63 (201)
85 3a00_A Guanylate kinase, GMP k 98.3 1.1E-07 3.6E-12 86.4 0.3 25 142-166 1-25 (186)
86 1q3t_A Cytidylate kinase; nucl 98.2 1.1E-05 3.8E-10 75.7 13.4 38 140-184 14-51 (236)
87 3tau_A Guanylate kinase, GMP k 98.2 4.3E-07 1.5E-11 84.1 3.5 27 140-166 6-32 (208)
88 3v9p_A DTMP kinase, thymidylat 98.2 8.1E-06 2.8E-10 77.9 12.2 28 140-167 23-50 (227)
89 3c8u_A Fructokinase; YP_612366 98.2 2.2E-05 7.6E-10 72.2 14.6 42 140-183 20-61 (208)
90 4e22_A Cytidylate kinase; P-lo 98.2 1.1E-05 3.8E-10 77.0 12.9 36 141-183 26-61 (252)
91 3a8t_A Adenylate isopentenyltr 98.2 1E-05 3.6E-10 81.8 12.4 142 140-323 38-195 (339)
92 1ex7_A Guanylate kinase; subst 98.2 1.1E-06 3.8E-11 81.5 4.5 82 144-236 3-100 (186)
93 3ld9_A DTMP kinase, thymidylat 98.1 6.2E-05 2.1E-09 71.6 16.2 94 139-235 18-114 (223)
94 3fdi_A Uncharacterized protein 98.1 1.3E-05 4.3E-10 74.5 10.7 35 142-183 6-40 (201)
95 3tqc_A Pantothenate kinase; bi 98.1 2.1E-05 7.1E-10 78.8 12.5 46 139-184 89-134 (321)
96 3hdt_A Putative kinase; struct 98.1 2E-05 6.8E-10 74.8 11.7 37 141-184 13-49 (223)
97 3nwj_A ATSK2; P loop, shikimat 98.1 2E-05 7E-10 76.0 11.3 35 142-183 48-82 (250)
98 3tr0_A Guanylate kinase, GMP k 98.0 8.4E-05 2.9E-09 67.0 14.3 26 141-166 6-31 (205)
99 1gtv_A TMK, thymidylate kinase 98.0 3.1E-06 1.1E-10 77.1 4.4 25 143-167 1-25 (214)
100 3hjn_A DTMP kinase, thymidylat 98.0 0.00042 1.4E-08 64.1 17.8 88 143-235 1-89 (197)
101 2v54_A DTMP kinase, thymidylat 98.0 2.5E-05 8.4E-10 70.5 9.1 26 141-166 3-28 (204)
102 3crm_A TRNA delta(2)-isopenten 97.9 1.4E-05 4.9E-10 80.2 7.7 37 140-183 3-39 (323)
103 3exa_A TRNA delta(2)-isopenten 97.9 1.6E-05 5.6E-10 79.8 7.0 83 141-236 2-101 (322)
104 3foz_A TRNA delta(2)-isopenten 97.8 3.5E-05 1.2E-09 77.2 8.3 37 140-183 8-44 (316)
105 3ake_A Cytidylate kinase; CMP 97.8 9.3E-06 3.2E-10 73.4 3.0 34 144-184 4-37 (208)
106 3cr8_A Sulfate adenylyltranfer 97.8 0.00013 4.3E-09 78.2 11.8 42 140-183 367-409 (552)
107 1s96_A Guanylate kinase, GMP k 97.7 5.2E-05 1.8E-09 71.5 7.8 28 139-166 13-40 (219)
108 3d3q_A TRNA delta(2)-isopenten 97.7 2.8E-05 9.5E-10 78.7 5.6 36 141-183 6-41 (340)
109 1a7j_A Phosphoribulokinase; tr 97.7 1.5E-05 5.1E-10 78.2 2.8 43 141-185 4-46 (290)
110 3asz_A Uridine kinase; cytidin 97.6 4E-05 1.4E-09 69.9 5.1 39 140-183 4-42 (211)
111 2vp4_A Deoxynucleoside kinase; 97.6 0.00048 1.7E-08 64.4 12.6 26 140-165 18-43 (230)
112 3ney_A 55 kDa erythrocyte memb 97.6 8E-06 2.7E-10 76.5 0.3 27 140-166 17-43 (197)
113 3eph_A TRNA isopentenyltransfe 97.5 8.6E-05 3E-09 76.8 6.4 83 142-237 2-101 (409)
114 2bbw_A Adenylate kinase 4, AK4 97.4 4.6E-05 1.6E-09 71.8 2.5 36 141-183 26-61 (246)
115 1odf_A YGR205W, hypothetical 3 97.4 0.00025 8.7E-09 69.6 7.2 45 140-184 29-74 (290)
116 2jeo_A Uridine-cytidine kinase 97.3 0.00012 4E-09 69.1 4.2 51 133-183 16-69 (245)
117 2j41_A Guanylate kinase; GMP, 97.3 0.00012 4E-09 66.0 3.8 27 140-166 4-30 (207)
118 1vma_A Cell division protein F 97.3 0.00042 1.4E-08 68.7 7.9 67 109-185 79-145 (306)
119 1sq5_A Pantothenate kinase; P- 97.2 0.0003 1E-08 69.2 5.5 45 140-184 78-122 (308)
120 1kgd_A CASK, peripheral plasma 97.1 0.00024 8.1E-09 63.9 3.7 26 141-166 4-29 (180)
121 1zu4_A FTSY; GTPase, signal re 97.1 0.0017 5.8E-08 64.6 10.1 47 137-185 100-146 (320)
122 3b9q_A Chloroplast SRP recepto 97.1 0.0012 4E-08 65.2 8.7 49 134-184 92-140 (302)
123 1p5z_B DCK, deoxycytidine kina 97.1 0.00023 8E-09 67.7 3.1 33 134-166 16-48 (263)
124 3tmk_A Thymidylate kinase; pho 97.1 0.0027 9.3E-08 59.9 10.4 27 141-167 4-30 (216)
125 2yhs_A FTSY, cell division pro 97.0 0.0047 1.6E-07 65.4 12.9 44 139-184 290-333 (503)
126 2og2_A Putative signal recogni 97.0 0.0015 5E-08 66.4 8.7 71 107-184 127-197 (359)
127 3kl4_A SRP54, signal recogniti 97.0 0.0018 6.3E-08 67.3 9.3 44 140-185 95-138 (433)
128 3dm5_A SRP54, signal recogniti 97.0 0.0018 6.1E-08 67.6 9.1 43 141-185 99-141 (443)
129 1g8f_A Sulfate adenylyltransfe 96.9 0.00064 2.2E-08 72.2 5.1 43 140-182 393-435 (511)
130 3aez_A Pantothenate kinase; tr 96.9 0.00097 3.3E-08 66.1 6.0 44 140-183 88-131 (312)
131 3lnc_A Guanylate kinase, GMP k 96.9 0.0003 1E-08 65.4 1.9 27 140-166 25-52 (231)
132 1p6x_A Thymidine kinase; P-loo 96.9 0.011 3.9E-07 59.4 13.3 27 141-167 6-32 (334)
133 3t15_A Ribulose bisphosphate c 96.8 0.0006 2E-08 66.4 3.8 39 140-183 34-72 (293)
134 1lvg_A Guanylate kinase, GMP k 96.8 0.00049 1.7E-08 63.1 2.8 26 141-166 3-28 (198)
135 3ec2_A DNA replication protein 96.8 0.00075 2.6E-08 60.0 3.9 41 142-183 38-78 (180)
136 2ocp_A DGK, deoxyguanosine kin 96.8 0.00079 2.7E-08 63.0 3.9 26 141-166 1-26 (241)
137 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0014 4.9E-08 61.0 5.5 39 140-183 37-75 (262)
138 3e70_C DPA, signal recognition 96.7 0.0013 4.6E-08 65.7 5.5 44 140-185 127-170 (328)
139 1lv7_A FTSH; alpha/beta domain 96.7 0.0014 5E-08 61.5 5.5 37 142-183 45-81 (257)
140 2ehv_A Hypothetical protein PH 96.7 0.0013 4.5E-08 60.6 5.0 43 140-183 28-70 (251)
141 3h4m_A Proteasome-activating n 96.7 0.0032 1.1E-07 59.7 7.8 38 141-183 50-87 (285)
142 3bos_A Putative DNA replicatio 96.7 0.0013 4.4E-08 59.8 4.8 41 142-184 52-92 (242)
143 2cvh_A DNA repair and recombin 96.7 0.0014 4.8E-08 59.3 5.0 38 140-182 18-55 (220)
144 1rj9_A FTSY, signal recognitio 96.7 0.0016 5.4E-08 64.4 5.7 43 140-184 100-142 (304)
145 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0012 4.2E-08 59.8 4.4 41 141-183 22-62 (235)
146 2qmh_A HPR kinase/phosphorylas 96.7 0.0013 4.5E-08 62.1 4.6 35 141-183 33-67 (205)
147 1znw_A Guanylate kinase, GMP k 96.7 0.001 3.4E-08 61.0 3.7 27 140-166 18-44 (207)
148 4b4t_L 26S protease subunit RP 96.6 0.003 1E-07 65.8 7.6 39 140-183 213-251 (437)
149 2dr3_A UPF0273 protein PH0284; 96.6 0.0016 5.3E-08 60.0 4.9 41 141-183 22-62 (247)
150 2x8a_A Nuclear valosin-contain 96.6 0.0014 4.6E-08 63.5 4.6 34 145-183 47-80 (274)
151 1z6g_A Guanylate kinase; struc 96.6 0.001 3.4E-08 62.0 3.1 27 140-166 21-47 (218)
152 2v3c_C SRP54, signal recogniti 96.6 0.0033 1.1E-07 65.2 7.3 44 140-185 97-140 (432)
153 4fcw_A Chaperone protein CLPB; 96.6 0.0059 2E-07 58.4 8.6 42 142-185 47-88 (311)
154 4b4t_K 26S protease regulatory 96.6 0.0037 1.3E-07 64.9 7.6 39 140-183 204-242 (428)
155 4b4t_M 26S protease regulatory 96.6 0.0033 1.1E-07 65.4 7.3 39 140-183 213-251 (434)
156 3b9p_A CG5977-PA, isoform A; A 96.6 0.0019 6.6E-08 61.8 5.1 38 141-183 53-90 (297)
157 2px0_A Flagellar biosynthesis 96.5 0.0023 7.9E-08 62.9 5.5 45 140-185 103-147 (296)
158 4b4t_J 26S protease regulatory 96.5 0.0039 1.3E-07 64.4 7.3 39 140-183 180-218 (405)
159 3eie_A Vacuolar protein sortin 96.5 0.0049 1.7E-07 60.4 7.8 38 140-182 49-86 (322)
160 1ye8_A Protein THEP1, hypothet 96.5 0.0014 4.6E-08 59.7 3.5 24 144-167 2-25 (178)
161 1of1_A Thymidine kinase; trans 96.5 0.018 6.1E-07 58.9 11.8 26 141-166 48-73 (376)
162 1htw_A HI0065; nucleotide-bind 96.5 0.0018 6.3E-08 57.9 4.0 27 140-166 31-57 (158)
163 2xxa_A Signal recognition part 96.5 0.0053 1.8E-07 63.6 8.1 46 139-186 97-143 (433)
164 4a74_A DNA repair and recombin 96.5 0.0014 4.9E-08 59.6 3.3 43 140-182 23-69 (231)
165 1yrb_A ATP(GTP)binding protein 96.5 0.0038 1.3E-07 58.3 6.3 43 137-182 9-51 (262)
166 1jbk_A CLPB protein; beta barr 96.4 0.0018 6.2E-08 56.1 3.8 25 142-166 43-67 (195)
167 3tif_A Uncharacterized ABC tra 96.4 0.0015 5E-08 62.0 3.4 47 135-184 24-70 (235)
168 1e2k_A Thymidine kinase; trans 96.4 0.017 5.9E-07 58.0 11.3 26 141-166 3-28 (331)
169 1svm_A Large T antigen; AAA+ f 96.4 0.0027 9.1E-08 64.8 5.5 28 139-166 166-193 (377)
170 1c9k_A COBU, adenosylcobinamid 96.4 0.0018 6E-08 59.8 3.6 33 144-182 1-33 (180)
171 3cf0_A Transitional endoplasmi 96.4 0.0017 5.8E-08 63.2 3.6 38 140-182 47-84 (301)
172 1ofh_A ATP-dependent HSL prote 96.4 0.0026 8.8E-08 60.5 4.8 38 141-183 49-86 (310)
173 2eyu_A Twitching motility prot 96.4 0.0021 7.1E-08 62.0 4.1 41 140-183 23-64 (261)
174 2qp9_X Vacuolar protein sortin 96.4 0.009 3.1E-07 59.7 8.9 36 141-181 83-118 (355)
175 1sxj_A Activator 1 95 kDa subu 96.4 0.0081 2.8E-07 63.0 8.9 40 141-185 76-115 (516)
176 3czq_A Putative polyphosphate 96.4 0.016 5.5E-07 57.7 10.5 156 140-351 84-244 (304)
177 1osn_A Thymidine kinase, VZV-T 96.4 0.021 7.1E-07 57.7 11.5 28 140-167 10-38 (341)
178 2j37_W Signal recognition part 96.4 0.0072 2.5E-07 64.0 8.4 44 140-185 99-142 (504)
179 4b4t_H 26S protease regulatory 96.4 0.0051 1.8E-07 64.6 7.2 39 140-183 241-279 (467)
180 1n0w_A DNA repair protein RAD5 96.3 0.003 1E-07 58.0 4.8 43 140-182 22-68 (243)
181 2w58_A DNAI, primosome compone 96.3 0.0024 8.3E-08 57.5 4.1 40 142-183 54-93 (202)
182 1ixz_A ATP-dependent metallopr 96.3 0.002 6.8E-08 60.4 3.6 33 145-182 52-84 (254)
183 1j8m_F SRP54, signal recogniti 96.3 0.0083 2.8E-07 59.0 8.0 42 142-185 98-139 (297)
184 2kjq_A DNAA-related protein; s 96.3 0.0032 1.1E-07 55.4 4.5 41 141-183 35-75 (149)
185 1mv5_A LMRA, multidrug resista 96.3 0.0026 8.9E-08 60.4 4.2 48 133-183 19-66 (243)
186 1xjc_A MOBB protein homolog; s 96.2 0.0037 1.3E-07 57.0 4.8 25 142-166 4-28 (169)
187 4b4t_I 26S protease regulatory 96.2 0.0076 2.6E-07 62.8 7.7 39 140-183 214-252 (437)
188 2pcj_A ABC transporter, lipopr 96.2 0.0022 7.4E-08 60.3 3.2 41 140-183 28-68 (224)
189 1njg_A DNA polymerase III subu 96.2 0.003 1E-07 56.5 3.9 27 141-167 44-70 (250)
190 1in4_A RUVB, holliday junction 96.2 0.0039 1.3E-07 61.5 5.1 27 141-167 50-76 (334)
191 4g1u_C Hemin import ATP-bindin 96.2 0.0028 9.5E-08 61.4 3.9 43 139-184 34-76 (266)
192 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0043 1.5E-07 61.2 5.1 40 140-183 43-82 (322)
193 3syl_A Protein CBBX; photosynt 96.2 0.0056 1.9E-07 58.6 5.7 44 140-183 65-110 (309)
194 1d2n_A N-ethylmaleimide-sensit 96.1 0.0048 1.6E-07 58.5 5.2 35 140-179 62-96 (272)
195 1b0u_A Histidine permease; ABC 96.1 0.0026 9E-08 61.3 3.4 46 135-183 25-70 (262)
196 3u61_B DNA polymerase accessor 96.1 0.0039 1.3E-07 60.5 4.6 39 140-183 46-84 (324)
197 2ffh_A Protein (FFH); SRP54, s 96.1 0.022 7.5E-07 59.0 10.4 43 141-185 97-139 (425)
198 2onk_A Molybdate/tungstate ABC 96.1 0.003 1E-07 60.2 3.6 40 140-183 23-62 (240)
199 3pfi_A Holliday junction ATP-d 96.1 0.009 3.1E-07 58.1 7.0 37 142-183 55-91 (338)
200 3gfo_A Cobalt import ATP-bindi 96.1 0.0023 7.9E-08 62.4 2.8 46 135-183 27-72 (275)
201 2p65_A Hypothetical protein PF 96.1 0.0026 8.9E-08 55.2 2.8 25 142-166 43-67 (187)
202 2pze_A Cystic fibrosis transme 96.1 0.0026 9E-08 59.9 3.0 38 139-179 31-68 (229)
203 3kta_A Chromosome segregation 96.1 0.003 1E-07 55.9 3.3 26 142-167 26-51 (182)
204 1ji0_A ABC transporter; ATP bi 96.1 0.0026 8.9E-08 60.4 2.9 41 140-183 30-70 (240)
205 1hqc_A RUVB; extended AAA-ATPa 96.1 0.01 3.5E-07 57.0 7.1 37 142-183 38-74 (324)
206 1g6h_A High-affinity branched- 96.1 0.0026 9E-08 61.0 2.9 44 137-183 28-71 (257)
207 1nij_A Hypothetical protein YJ 96.1 0.0042 1.4E-07 61.3 4.4 23 143-165 5-27 (318)
208 1iy2_A ATP-dependent metallopr 96.0 0.0033 1.1E-07 60.0 3.6 32 145-181 76-107 (278)
209 2ixe_A Antigen peptide transpo 96.0 0.0032 1.1E-07 61.1 3.4 46 135-183 38-83 (271)
210 2olj_A Amino acid ABC transpor 96.0 0.0032 1.1E-07 61.0 3.4 44 137-183 45-88 (263)
211 2ff7_A Alpha-hemolysin translo 96.0 0.0028 9.6E-08 60.5 2.9 46 135-183 28-73 (247)
212 1vpl_A ABC transporter, ATP-bi 96.0 0.0033 1.1E-07 60.6 3.4 44 137-183 36-79 (256)
213 2chg_A Replication factor C sm 96.0 0.0075 2.6E-07 53.4 5.4 22 145-166 41-62 (226)
214 2yz2_A Putative ABC transporte 96.0 0.0035 1.2E-07 60.5 3.4 46 135-183 26-71 (266)
215 3tqf_A HPR(Ser) kinase; transf 96.0 0.0049 1.7E-07 57.1 4.2 35 141-183 15-49 (181)
216 2cbz_A Multidrug resistance-as 96.0 0.0032 1.1E-07 59.7 3.1 32 135-166 24-55 (237)
217 1ls1_A Signal recognition part 96.0 0.0064 2.2E-07 59.6 5.4 43 141-185 97-139 (295)
218 3vfd_A Spastin; ATPase, microt 96.0 0.007 2.4E-07 60.9 5.7 38 141-183 147-184 (389)
219 2v1u_A Cell division control p 96.0 0.0066 2.3E-07 59.2 5.4 44 140-183 42-89 (387)
220 1sgw_A Putative ABC transporte 96.0 0.0029 9.9E-08 59.4 2.7 41 140-183 33-73 (214)
221 3d8b_A Fidgetin-like protein 1 95.9 0.0057 2E-07 61.0 4.9 39 140-183 115-153 (357)
222 1np6_A Molybdopterin-guanine d 95.9 0.0046 1.6E-07 56.3 3.8 25 142-166 6-30 (174)
223 1l8q_A Chromosomal replication 95.9 0.0034 1.2E-07 61.1 3.1 40 142-183 37-76 (324)
224 3cf2_A TER ATPase, transitiona 95.9 0.0077 2.6E-07 67.2 6.3 38 140-182 236-273 (806)
225 3p32_A Probable GTPase RV1496/ 95.9 0.0076 2.6E-07 60.2 5.6 41 140-182 77-117 (355)
226 3n70_A Transport activator; si 95.9 0.0064 2.2E-07 52.6 4.4 36 145-183 27-62 (145)
227 1cr0_A DNA primase/helicase; R 95.9 0.0042 1.5E-07 59.7 3.6 42 140-182 33-74 (296)
228 1p9r_A General secretion pathw 95.9 0.0075 2.6E-07 62.3 5.6 40 141-183 166-205 (418)
229 2ihy_A ABC transporter, ATP-bi 95.9 0.0044 1.5E-07 60.4 3.6 41 140-183 45-85 (279)
230 2zu0_C Probable ATP-dependent 95.8 0.0046 1.6E-07 59.7 3.6 44 139-183 43-86 (267)
231 3hr8_A Protein RECA; alpha and 95.8 0.0076 2.6E-07 61.1 5.2 41 141-183 60-100 (356)
232 2zts_A Putative uncharacterize 95.8 0.0055 1.9E-07 56.3 3.8 43 140-183 28-70 (251)
233 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0047 1.6E-07 59.0 3.5 43 140-183 27-69 (250)
234 3b85_A Phosphate starvation-in 95.8 0.004 1.4E-07 58.1 2.7 24 142-165 22-45 (208)
235 2r62_A Cell division protease 95.8 0.0023 7.7E-08 60.3 1.1 37 142-183 44-80 (268)
236 2ghi_A Transport protein; mult 95.8 0.0045 1.5E-07 59.6 3.1 46 134-183 38-83 (260)
237 2gza_A Type IV secretion syste 95.8 0.0062 2.1E-07 61.3 4.3 36 141-179 174-209 (361)
238 1um8_A ATP-dependent CLP prote 95.7 0.0079 2.7E-07 59.9 5.0 37 142-183 72-108 (376)
239 3nh6_A ATP-binding cassette SU 95.7 0.0038 1.3E-07 61.9 2.6 44 139-185 77-120 (306)
240 1dek_A Deoxynucleoside monopho 95.7 0.007 2.4E-07 58.1 4.2 31 143-180 2-32 (241)
241 2zr9_A Protein RECA, recombina 95.7 0.0085 2.9E-07 60.2 4.8 41 141-183 60-100 (349)
242 1fnn_A CDC6P, cell division co 95.7 0.013 4.5E-07 57.4 6.1 38 144-183 46-84 (389)
243 2orw_A Thymidine kinase; TMTK, 95.7 0.0068 2.3E-07 55.2 3.7 25 142-166 3-27 (184)
244 2i3b_A HCR-ntpase, human cance 95.6 0.0053 1.8E-07 56.4 3.0 23 144-166 3-25 (189)
245 2qi9_C Vitamin B12 import ATP- 95.6 0.005 1.7E-07 59.0 2.9 40 140-183 24-63 (249)
246 1sxj_E Activator 1 40 kDa subu 95.6 0.0058 2E-07 59.6 3.5 26 140-166 35-60 (354)
247 3ch4_B Pmkase, phosphomevalona 95.6 0.014 4.8E-07 54.8 5.9 36 140-179 9-44 (202)
248 2b8t_A Thymidine kinase; deoxy 95.6 0.0097 3.3E-07 56.4 4.8 38 140-179 10-47 (223)
249 3hws_A ATP-dependent CLP prote 95.6 0.0089 3E-07 59.3 4.8 36 141-181 50-85 (363)
250 2r2a_A Uncharacterized protein 95.6 0.007 2.4E-07 56.2 3.7 26 140-165 3-28 (199)
251 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.0074 2.5E-07 53.1 3.6 26 141-166 22-47 (149)
252 3fvq_A Fe(3+) IONS import ATP- 95.6 0.0069 2.3E-07 61.5 3.8 42 139-183 27-68 (359)
253 1nlf_A Regulatory protein REPA 95.6 0.0063 2.2E-07 58.2 3.3 43 140-183 28-79 (279)
254 2nq2_C Hypothetical ABC transp 95.6 0.0055 1.9E-07 58.8 2.9 27 140-166 29-55 (253)
255 2v9p_A Replication protein E1; 95.6 0.0068 2.3E-07 60.2 3.6 27 140-166 124-150 (305)
256 3te6_A Regulatory protein SIR3 95.5 0.012 4.2E-07 58.7 5.4 46 140-185 43-93 (318)
257 3tui_C Methionine import ATP-b 95.5 0.0077 2.6E-07 61.4 3.9 47 135-184 47-93 (366)
258 2qby_A CDC6 homolog 1, cell di 95.5 0.0092 3.1E-07 58.0 4.3 43 140-182 43-86 (386)
259 3jvv_A Twitching mobility prot 95.5 0.0083 2.9E-07 60.6 4.1 25 142-166 123-147 (356)
260 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.0073 2.5E-07 60.1 3.6 35 142-179 171-205 (330)
261 1g41_A Heat shock protein HSLU 95.5 0.0097 3.3E-07 62.1 4.7 37 142-183 50-86 (444)
262 2ewv_A Twitching motility prot 95.5 0.0079 2.7E-07 60.9 3.9 27 140-166 134-160 (372)
263 2f1r_A Molybdopterin-guanine d 95.5 0.0044 1.5E-07 56.2 1.8 24 143-166 3-26 (171)
264 2zan_A Vacuolar protein sortin 95.5 0.011 3.6E-07 61.1 4.8 40 140-183 165-204 (444)
265 2qby_B CDC6 homolog 3, cell di 95.5 0.011 3.9E-07 57.9 4.8 27 140-166 43-69 (384)
266 3rlf_A Maltose/maltodextrin im 95.4 0.0084 2.9E-07 61.4 3.9 42 139-183 26-67 (381)
267 2ce7_A Cell division protein F 95.4 0.013 4.3E-07 61.6 5.2 38 141-183 48-85 (476)
268 2bjv_A PSP operon transcriptio 95.4 0.014 4.7E-07 55.0 5.0 39 143-183 30-68 (265)
269 2yyz_A Sugar ABC transporter, 95.4 0.0091 3.1E-07 60.5 4.0 46 135-183 22-67 (359)
270 3uk6_A RUVB-like 2; hexameric 95.4 0.007 2.4E-07 59.4 3.0 26 142-167 70-95 (368)
271 3d31_A Sulfate/molybdate ABC t 95.4 0.0075 2.6E-07 60.8 3.3 48 133-183 17-64 (348)
272 1pzn_A RAD51, DNA repair and r 95.4 0.012 4.2E-07 58.9 4.8 44 140-183 129-176 (349)
273 1u94_A RECA protein, recombina 95.4 0.013 4.3E-07 59.3 4.9 41 141-183 62-102 (356)
274 2it1_A 362AA long hypothetical 95.4 0.0094 3.2E-07 60.5 3.9 46 135-183 22-67 (362)
275 2bbs_A Cystic fibrosis transme 95.3 0.0081 2.8E-07 59.0 3.0 34 133-166 55-88 (290)
276 2qm8_A GTPase/ATPase; G protei 95.3 0.015 5.2E-07 57.9 5.1 41 140-182 53-93 (337)
277 1v43_A Sugar-binding transport 95.3 0.01 3.6E-07 60.4 3.9 46 135-183 30-75 (372)
278 1z47_A CYSA, putative ABC-tran 95.3 0.0091 3.1E-07 60.5 3.4 42 139-183 38-79 (355)
279 1sxj_C Activator 1 40 kDa subu 95.3 0.011 3.6E-07 58.1 3.8 24 142-166 47-70 (340)
280 2oap_1 GSPE-2, type II secreti 95.2 0.011 3.8E-07 62.5 4.2 40 141-183 259-299 (511)
281 2pjz_A Hypothetical protein ST 95.2 0.0079 2.7E-07 58.2 2.8 44 134-182 23-66 (263)
282 1v5w_A DMC1, meiotic recombina 95.2 0.018 6E-07 57.4 5.3 43 140-182 120-166 (343)
283 2z43_A DNA repair and recombin 95.2 0.015 5.3E-07 57.2 4.9 43 140-182 105-151 (324)
284 2wsm_A Hydrogenase expression/ 95.2 0.024 8.2E-07 51.3 5.8 39 141-182 29-67 (221)
285 3sop_A Neuronal-specific septi 95.2 0.0092 3.1E-07 57.8 3.1 24 143-166 3-26 (270)
286 1lw7_A Transcriptional regulat 95.2 0.012 4E-07 58.9 3.9 25 142-166 170-194 (365)
287 2p67_A LAO/AO transport system 95.2 0.017 5.7E-07 57.5 5.0 42 140-183 54-95 (341)
288 2www_A Methylmalonic aciduria 95.2 0.019 6.5E-07 57.4 5.4 41 141-183 73-113 (349)
289 1tue_A Replication protein E1; 95.1 0.021 7.1E-07 54.2 5.3 25 142-166 58-82 (212)
290 1kjw_A Postsynaptic density pr 95.1 0.016 5.4E-07 57.1 4.6 34 128-166 93-126 (295)
291 1g29_1 MALK, maltose transport 95.1 0.012 4.1E-07 59.9 3.7 41 140-183 27-67 (372)
292 2c9o_A RUVB-like 1; hexameric 95.1 0.018 6.1E-07 59.4 5.1 40 141-183 62-101 (456)
293 3m6a_A ATP-dependent protease 95.1 0.016 5.5E-07 61.4 4.8 38 141-183 107-144 (543)
294 3hu3_A Transitional endoplasmi 95.0 0.036 1.2E-06 58.2 7.3 39 140-183 236-274 (489)
295 1oxx_K GLCV, glucose, ABC tran 95.0 0.008 2.7E-07 60.7 2.2 45 135-182 24-68 (353)
296 3bh0_A DNAB-like replicative h 95.0 0.021 7.3E-07 56.0 5.2 41 140-182 66-106 (315)
297 2dhr_A FTSH; AAA+ protein, hex 95.0 0.02 6.8E-07 60.5 5.3 37 142-183 64-100 (499)
298 3qks_A DNA double-strand break 95.0 0.014 4.8E-07 53.7 3.6 27 141-167 22-48 (203)
299 2ga8_A Hypothetical 39.9 kDa p 95.0 0.0097 3.3E-07 60.5 2.6 36 304-339 291-326 (359)
300 1ko7_A HPR kinase/phosphatase; 94.9 0.035 1.2E-06 55.4 6.6 84 85-183 93-177 (314)
301 3b5x_A Lipid A export ATP-bind 94.9 0.017 5.8E-07 61.5 4.5 42 140-184 367-408 (582)
302 1jr3_A DNA polymerase III subu 94.9 0.016 5.3E-07 56.7 3.9 27 141-167 37-63 (373)
303 2hf9_A Probable hydrogenase ni 94.9 0.029 9.9E-07 50.9 5.3 38 141-181 37-74 (226)
304 1xp8_A RECA protein, recombina 94.8 0.022 7.4E-07 57.8 4.8 41 141-183 73-113 (366)
305 3zq6_A Putative arsenical pump 94.8 0.031 1.1E-06 55.0 5.8 39 142-182 14-52 (324)
306 1oix_A RAS-related protein RAB 94.8 0.017 5.9E-07 51.6 3.6 25 142-166 29-53 (191)
307 3czp_A Putative polyphosphate 94.8 0.045 1.5E-06 57.9 7.2 130 140-324 41-170 (500)
308 3b60_A Lipid A export ATP-bind 94.8 0.016 5.3E-07 61.9 3.7 42 140-184 367-408 (582)
309 1tf7_A KAIC; homohexamer, hexa 94.8 0.02 6.8E-07 60.2 4.5 41 140-183 37-79 (525)
310 1xx6_A Thymidine kinase; NESG, 94.7 0.024 8.3E-07 52.3 4.5 38 140-179 6-43 (191)
311 2wjg_A FEOB, ferrous iron tran 94.7 0.02 6.7E-07 50.1 3.7 26 140-165 5-30 (188)
312 3ug7_A Arsenical pump-driving 94.7 0.03 1E-06 55.9 5.4 41 140-182 24-64 (349)
313 2z4s_A Chromosomal replication 94.7 0.016 5.4E-07 59.8 3.4 42 142-183 130-171 (440)
314 3iqw_A Tail-anchored protein t 94.7 0.036 1.2E-06 55.4 5.9 41 140-182 14-54 (334)
315 1sxj_D Activator 1 41 kDa subu 94.7 0.016 5.6E-07 56.1 3.3 38 145-182 61-99 (353)
316 2f9l_A RAB11B, member RAS onco 94.7 0.017 5.9E-07 51.6 3.2 24 142-165 5-28 (199)
317 1pui_A ENGB, probable GTP-bind 94.6 0.012 4E-07 52.7 2.0 26 140-165 24-49 (210)
318 2r44_A Uncharacterized protein 94.6 0.019 6.6E-07 55.8 3.7 32 144-180 48-79 (331)
319 2fna_A Conserved hypothetical 94.6 0.028 9.6E-07 53.9 4.8 34 144-182 32-65 (357)
320 1ypw_A Transitional endoplasmi 94.6 0.016 5.3E-07 64.5 3.4 38 140-182 236-273 (806)
321 3gd7_A Fusion complex of cysti 94.6 0.018 6.1E-07 59.0 3.6 46 135-184 40-85 (390)
322 2i1q_A DNA repair and recombin 94.6 0.028 9.5E-07 54.9 4.7 26 140-165 96-121 (322)
323 2wji_A Ferrous iron transport 94.6 0.021 7.1E-07 49.5 3.4 24 142-165 3-26 (165)
324 4dzz_A Plasmid partitioning pr 94.5 0.024 8.3E-07 50.6 3.8 40 142-183 2-41 (206)
325 3end_A Light-independent proto 94.5 0.033 1.1E-06 53.7 4.9 41 140-182 39-79 (307)
326 2chq_A Replication factor C sm 94.5 0.023 7.8E-07 54.0 3.8 24 142-166 39-62 (319)
327 3pvs_A Replication-associated 94.5 0.025 8.6E-07 58.6 4.4 25 143-167 51-75 (447)
328 3czp_A Putative polyphosphate 94.5 0.077 2.6E-06 56.1 8.1 157 140-351 298-458 (500)
329 4a82_A Cystic fibrosis transme 94.5 0.012 4.2E-07 62.6 2.0 43 140-185 365-407 (578)
330 3qkt_A DNA double-strand break 94.5 0.022 7.5E-07 56.4 3.7 27 141-167 22-48 (339)
331 2woo_A ATPase GET3; tail-ancho 94.5 0.04 1.4E-06 54.5 5.6 42 140-183 17-58 (329)
332 3qf4_B Uncharacterized ABC tra 94.4 0.017 5.8E-07 61.9 3.0 43 140-185 379-421 (598)
333 1iqp_A RFCS; clamp loader, ext 94.4 0.027 9.1E-07 53.7 4.1 24 142-166 47-70 (327)
334 4ag6_A VIRB4 ATPase, type IV s 94.4 0.034 1.2E-06 55.8 5.0 36 144-181 37-72 (392)
335 2yl4_A ATP-binding cassette SU 94.4 0.017 5.6E-07 61.8 2.9 42 140-184 368-409 (595)
336 2orv_A Thymidine kinase; TP4A 94.4 0.04 1.4E-06 52.9 5.3 42 136-179 13-54 (234)
337 3ea0_A ATPase, para family; al 94.4 0.048 1.6E-06 50.1 5.6 41 141-183 4-45 (245)
338 1knx_A Probable HPR(Ser) kinas 94.4 0.025 8.6E-07 56.4 3.9 76 83-165 94-170 (312)
339 3lda_A DNA repair protein RAD5 94.4 0.035 1.2E-06 56.9 5.1 43 140-182 176-222 (400)
340 1sxj_B Activator 1 37 kDa subu 94.3 0.027 9.2E-07 53.6 3.9 24 142-166 43-66 (323)
341 1ojl_A Transcriptional regulat 94.3 0.054 1.8E-06 52.9 6.2 41 142-184 25-65 (304)
342 2lkc_A Translation initiation 94.3 0.031 1E-06 48.1 3.9 26 140-165 6-31 (178)
343 3qf7_A RAD50; ABC-ATPase, ATPa 94.3 0.025 8.4E-07 57.0 3.7 24 142-165 23-46 (365)
344 1nrj_B SR-beta, signal recogni 94.3 0.028 9.7E-07 50.6 3.7 27 140-166 10-36 (218)
345 2ce2_X GTPase HRAS; signaling 94.3 0.028 9.6E-07 47.2 3.4 23 143-165 4-26 (166)
346 3co5_A Putative two-component 94.2 0.013 4.5E-07 50.5 1.3 22 145-166 30-51 (143)
347 2qgz_A Helicase loader, putati 94.2 0.026 8.9E-07 55.4 3.6 41 142-183 152-192 (308)
348 2yv5_A YJEQ protein; hydrolase 94.2 0.026 8.9E-07 55.2 3.5 24 142-166 165-188 (302)
349 3bfv_A CAPA1, CAPB2, membrane 94.2 0.046 1.6E-06 52.6 5.2 42 142-185 82-124 (271)
350 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.022 7.5E-07 59.5 3.1 25 141-165 137-161 (460)
351 2fn4_A P23, RAS-related protei 94.1 0.033 1.1E-06 47.9 3.7 25 141-165 8-32 (181)
352 2j9r_A Thymidine kinase; TK1, 94.1 0.052 1.8E-06 51.4 5.3 38 140-179 26-63 (214)
353 3qf4_A ABC transporter, ATP-bi 94.1 0.022 7.4E-07 61.0 3.0 43 140-185 367-409 (587)
354 3k9g_A PF-32 protein; ssgcid, 94.1 0.036 1.2E-06 52.2 4.2 40 141-183 27-66 (267)
355 2dyk_A GTP-binding protein; GT 94.1 0.027 9.3E-07 47.5 3.1 21 145-165 4-24 (161)
356 3ozx_A RNAse L inhibitor; ATP 94.1 0.025 8.4E-07 60.2 3.4 27 140-166 23-49 (538)
357 3cio_A ETK, tyrosine-protein k 94.0 0.048 1.6E-06 53.3 5.1 43 141-185 103-146 (299)
358 1yqt_A RNAse L inhibitor; ATP- 94.0 0.027 9.1E-07 59.8 3.5 27 140-166 45-71 (538)
359 4a1f_A DNAB helicase, replicat 94.0 0.042 1.4E-06 55.2 4.7 42 140-183 44-85 (338)
360 1g8p_A Magnesium-chelatase 38 94.0 0.017 5.9E-07 56.0 1.8 22 145-166 48-69 (350)
361 2r8r_A Sensor protein; KDPD, P 94.0 0.059 2E-06 51.5 5.5 39 142-182 6-44 (228)
362 3rhf_A Putative polyphosphate 94.0 0.051 1.8E-06 53.7 5.1 130 140-324 73-202 (289)
363 2qen_A Walker-type ATPase; unk 94.0 0.045 1.5E-06 52.4 4.7 33 143-182 32-64 (350)
364 1kao_A RAP2A; GTP-binding prot 94.0 0.036 1.2E-06 46.7 3.6 24 142-165 3-26 (167)
365 1ky3_A GTP-binding protein YPT 94.0 0.033 1.1E-06 47.9 3.3 25 141-165 7-31 (182)
366 2qag_B Septin-6, protein NEDD5 93.9 0.027 9.1E-07 58.5 3.1 26 140-165 38-65 (427)
367 1z2a_A RAS-related protein RAB 93.9 0.036 1.2E-06 47.0 3.4 24 142-165 5-28 (168)
368 2ged_A SR-beta, signal recogni 93.9 0.038 1.3E-06 48.5 3.7 25 141-165 47-71 (193)
369 3euj_A Chromosome partition pr 93.9 0.03 1E-06 59.0 3.5 24 143-166 30-53 (483)
370 2gj8_A MNME, tRNA modification 93.8 0.039 1.3E-06 48.4 3.6 25 141-165 3-27 (172)
371 1ek0_A Protein (GTP-binding pr 93.8 0.034 1.2E-06 47.1 3.1 23 143-165 4-26 (170)
372 1a5t_A Delta prime, HOLB; zinc 93.8 0.04 1.4E-06 54.3 4.0 28 140-167 22-49 (334)
373 1ihu_A Arsenical pump-driving 93.8 0.055 1.9E-06 57.4 5.3 41 140-182 6-46 (589)
374 3bgw_A DNAB-like replicative h 93.7 0.045 1.5E-06 56.7 4.5 42 140-183 195-236 (444)
375 3clv_A RAB5 protein, putative; 93.7 0.052 1.8E-06 47.2 4.3 26 140-165 5-30 (208)
376 1tq4_A IIGP1, interferon-induc 93.7 0.036 1.2E-06 57.1 3.7 25 141-165 68-92 (413)
377 1z0j_A RAB-22, RAS-related pro 93.7 0.036 1.2E-06 47.1 3.1 24 142-165 6-29 (170)
378 2woj_A ATPase GET3; tail-ancho 93.7 0.066 2.3E-06 53.7 5.5 41 140-182 16-58 (354)
379 2vhj_A Ntpase P4, P4; non- hyd 93.7 0.04 1.4E-06 55.5 3.8 34 142-180 123-156 (331)
380 2q6t_A DNAB replication FORK h 93.7 0.063 2.2E-06 55.1 5.5 42 140-182 198-239 (444)
381 2r6a_A DNAB helicase, replicat 93.7 0.039 1.3E-06 56.9 3.8 42 140-182 201-242 (454)
382 1upt_A ARL1, ADP-ribosylation 93.7 0.053 1.8E-06 46.2 4.1 26 140-165 5-30 (171)
383 1u8z_A RAS-related protein RAL 93.7 0.043 1.5E-06 46.3 3.5 24 142-165 4-27 (168)
384 1g3q_A MIND ATPase, cell divis 93.7 0.055 1.9E-06 49.5 4.5 40 142-183 3-42 (237)
385 1q57_A DNA primase/helicase; d 93.7 0.053 1.8E-06 56.4 4.9 42 140-183 240-282 (503)
386 1g16_A RAS-related protein SEC 93.6 0.039 1.3E-06 46.9 3.2 23 143-165 4-26 (170)
387 1svi_A GTP-binding protein YSX 93.6 0.052 1.8E-06 47.6 4.1 25 141-165 22-46 (195)
388 2erx_A GTP-binding protein DI- 93.6 0.038 1.3E-06 46.9 3.0 23 143-165 4-26 (172)
389 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.038 1.3E-06 47.5 3.1 24 142-165 7-30 (177)
390 1yqt_A RNAse L inhibitor; ATP- 93.6 0.036 1.2E-06 58.9 3.4 26 141-166 311-336 (538)
391 1e69_A Chromosome segregation 93.6 0.03 1E-06 55.0 2.7 23 142-164 24-46 (322)
392 2hxs_A RAB-26, RAS-related pro 93.6 0.049 1.7E-06 46.8 3.8 25 141-165 5-29 (178)
393 3io3_A DEHA2D07832P; chaperone 93.6 0.072 2.5E-06 53.5 5.5 40 140-181 16-57 (348)
394 3pxi_A Negative regulator of g 93.6 0.063 2.2E-06 58.7 5.5 43 140-184 518-561 (758)
395 3kjh_A CO dehydrogenase/acetyl 93.6 0.049 1.7E-06 49.8 4.0 36 145-182 3-38 (254)
396 3j16_B RLI1P; ribosome recycli 93.5 0.037 1.3E-06 59.8 3.5 27 140-166 101-127 (608)
397 1z08_A RAS-related protein RAB 93.5 0.04 1.4E-06 46.9 3.1 24 142-165 6-29 (170)
398 2zej_A Dardarin, leucine-rich 93.5 0.036 1.2E-06 48.9 2.9 22 143-164 3-24 (184)
399 2rcn_A Probable GTPase ENGC; Y 93.5 0.038 1.3E-06 56.1 3.3 24 142-165 215-238 (358)
400 3con_A GTPase NRAS; structural 93.5 0.04 1.4E-06 48.3 3.1 24 142-165 21-44 (190)
401 2ph1_A Nucleotide-binding prot 93.5 0.075 2.6E-06 50.1 5.2 42 141-184 18-59 (262)
402 1cp2_A CP2, nitrogenase iron p 93.5 0.072 2.4E-06 49.9 5.0 38 144-183 3-40 (269)
403 3auy_A DNA double-strand break 93.4 0.044 1.5E-06 54.9 3.7 25 140-164 23-47 (371)
404 3tkl_A RAS-related protein RAB 93.4 0.044 1.5E-06 48.0 3.3 24 142-165 16-39 (196)
405 1wb9_A DNA mismatch repair pro 93.4 0.038 1.3E-06 61.6 3.5 25 141-165 606-630 (800)
406 3bk7_A ABC transporter ATP-bin 93.4 0.038 1.3E-06 59.6 3.4 26 141-166 381-406 (607)
407 2h17_A ADP-ribosylation factor 93.4 0.042 1.4E-06 48.1 3.1 26 140-165 19-44 (181)
408 3io5_A Recombination and repai 93.4 0.061 2.1E-06 54.2 4.6 39 144-182 30-68 (333)
409 3q9l_A Septum site-determining 93.4 0.061 2.1E-06 49.9 4.4 40 142-183 3-42 (260)
410 1hyq_A MIND, cell division inh 93.4 0.068 2.3E-06 49.9 4.7 40 142-183 3-42 (263)
411 1w1w_A Structural maintenance 93.4 0.041 1.4E-06 56.1 3.4 26 141-166 25-50 (430)
412 1z6t_A APAF-1, apoptotic prote 93.4 0.26 8.9E-06 51.5 9.6 24 141-164 146-169 (591)
413 1c1y_A RAS-related protein RAP 93.3 0.054 1.8E-06 45.8 3.6 23 143-165 4-26 (167)
414 3ozx_A RNAse L inhibitor; ATP 93.3 0.032 1.1E-06 59.4 2.6 26 141-166 293-318 (538)
415 1u0l_A Probable GTPase ENGC; p 93.3 0.041 1.4E-06 53.7 3.1 24 142-165 169-192 (301)
416 2xtp_A GTPase IMAP family memb 93.3 0.052 1.8E-06 50.8 3.7 26 140-165 20-45 (260)
417 1r2q_A RAS-related protein RAB 93.3 0.049 1.7E-06 46.1 3.2 24 142-165 6-29 (170)
418 1w5s_A Origin recognition comp 93.3 0.045 1.5E-06 54.0 3.4 26 141-166 49-76 (412)
419 3q72_A GTP-binding protein RAD 93.2 0.043 1.5E-06 46.6 2.8 21 144-164 4-24 (166)
420 1z0f_A RAB14, member RAS oncog 93.2 0.048 1.6E-06 46.7 3.1 24 142-165 15-38 (179)
421 3q85_A GTP-binding protein REM 93.2 0.047 1.6E-06 46.5 3.1 21 144-164 4-24 (169)
422 4aby_A DNA repair protein RECN 93.2 0.02 6.7E-07 57.5 0.7 23 144-166 62-84 (415)
423 2nzj_A GTP-binding protein REM 93.2 0.054 1.8E-06 46.3 3.4 24 142-165 4-27 (175)
424 1vg8_A RAS-related protein RAB 93.2 0.05 1.7E-06 48.2 3.3 26 140-165 6-31 (207)
425 3bc1_A RAS-related protein RAB 93.2 0.049 1.7E-06 47.2 3.2 24 142-165 11-34 (195)
426 3bk7_A ABC transporter ATP-bin 93.2 0.038 1.3E-06 59.6 3.0 27 140-166 115-141 (607)
427 4dsu_A GTPase KRAS, isoform 2B 93.2 0.048 1.6E-06 47.3 3.1 24 142-165 4-27 (189)
428 1fzq_A ADP-ribosylation factor 93.1 0.055 1.9E-06 47.6 3.5 26 140-165 14-39 (181)
429 1ewq_A DNA mismatch repair pro 93.1 0.043 1.5E-06 60.8 3.2 24 142-165 576-599 (765)
430 3tw8_B RAS-related protein RAB 93.1 0.048 1.6E-06 46.8 2.9 24 142-165 9-32 (181)
431 3kkq_A RAS-related protein M-R 93.1 0.064 2.2E-06 46.5 3.7 24 142-165 18-41 (183)
432 1moz_A ARL1, ADP-ribosylation 93.0 0.047 1.6E-06 47.3 2.8 25 140-164 16-40 (183)
433 2y8e_A RAB-protein 6, GH09086P 93.0 0.052 1.8E-06 46.5 3.1 23 143-165 15-37 (179)
434 3la6_A Tyrosine-protein kinase 93.0 0.12 4E-06 50.3 5.9 42 142-185 93-134 (286)
435 3cwq_A Para family chromosome 93.0 0.1 3.4E-06 47.9 5.1 38 143-183 2-39 (209)
436 3j16_B RLI1P; ribosome recycli 93.0 0.047 1.6E-06 59.0 3.3 24 143-166 379-402 (608)
437 3cf2_A TER ATPase, transitiona 93.0 0.053 1.8E-06 60.5 3.8 28 140-167 509-536 (806)
438 1r8s_A ADP-ribosylation factor 93.0 0.06 2E-06 45.6 3.3 21 145-165 3-23 (164)
439 2bme_A RAB4A, RAS-related prot 92.9 0.054 1.9E-06 47.0 3.1 24 142-165 10-33 (186)
440 1tf7_A KAIC; homohexamer, hexa 92.9 0.051 1.8E-06 57.0 3.3 41 140-182 279-319 (525)
441 2efe_B Small GTP-binding prote 92.9 0.056 1.9E-06 46.6 3.1 24 142-165 12-35 (181)
442 2cxx_A Probable GTP-binding pr 92.9 0.053 1.8E-06 47.1 2.9 21 145-165 4-24 (190)
443 2o5v_A DNA replication and rep 92.9 0.061 2.1E-06 54.4 3.7 23 142-164 26-48 (359)
444 3pqc_A Probable GTP-binding pr 92.9 0.073 2.5E-06 46.3 3.8 23 143-165 24-46 (195)
445 2bov_A RAla, RAS-related prote 92.8 0.069 2.3E-06 47.2 3.6 24 142-165 14-37 (206)
446 1r6b_X CLPA protein; AAA+, N-t 92.8 0.097 3.3E-06 57.0 5.5 39 141-184 486-525 (758)
447 2g6b_A RAS-related protein RAB 92.7 0.062 2.1E-06 46.3 3.1 24 142-165 10-33 (180)
448 2afh_E Nitrogenase iron protei 92.7 0.091 3.1E-06 50.1 4.6 38 144-183 4-41 (289)
449 2a9k_A RAS-related protein RAL 92.7 0.068 2.3E-06 46.1 3.3 24 142-165 18-41 (187)
450 2xkx_A Disks large homolog 4; 92.7 0.29 1E-05 53.6 9.2 93 128-236 519-628 (721)
451 2obl_A ESCN; ATPase, hydrolase 92.7 0.064 2.2E-06 53.8 3.6 26 141-166 70-95 (347)
452 2qnr_A Septin-2, protein NEDD5 92.6 0.051 1.7E-06 53.1 2.7 22 143-164 19-40 (301)
453 3thx_B DNA mismatch repair pro 92.6 0.046 1.6E-06 61.8 2.7 23 141-163 672-694 (918)
454 3thx_A DNA mismatch repair pro 92.6 0.056 1.9E-06 61.3 3.3 22 141-162 661-682 (934)
455 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.068 2.3E-06 46.2 3.2 24 142-165 5-28 (186)
456 1qvr_A CLPB protein; coiled co 92.6 0.082 2.8E-06 58.8 4.6 43 141-185 586-629 (854)
457 1w4r_A Thymidine kinase; type 92.6 0.11 3.8E-06 48.4 4.9 39 140-180 18-56 (195)
458 2oil_A CATX-8, RAS-related pro 92.6 0.068 2.3E-06 47.0 3.2 24 142-165 25-48 (193)
459 1wcv_1 SOJ, segregation protei 92.5 0.073 2.5E-06 50.0 3.5 41 141-183 6-46 (257)
460 1ypw_A Transitional endoplasmi 92.5 0.031 1.1E-06 62.1 1.2 38 141-183 510-547 (806)
461 3lxx_A GTPase IMAP family memb 92.5 0.068 2.3E-06 49.5 3.3 27 140-166 27-53 (239)
462 3bwd_D RAC-like GTP-binding pr 92.5 0.082 2.8E-06 45.6 3.6 25 141-165 7-31 (182)
463 3pxg_A Negative regulator of g 92.5 0.059 2E-06 55.9 3.1 23 144-166 203-225 (468)
464 1zd9_A ADP-ribosylation factor 92.5 0.071 2.4E-06 47.0 3.2 26 140-165 20-45 (188)
465 2gf0_A GTP-binding protein DI- 92.4 0.1 3.4E-06 45.8 4.2 25 141-165 7-31 (199)
466 2gno_A DNA polymerase III, gam 92.4 0.14 4.8E-06 50.3 5.6 40 142-181 18-58 (305)
467 1m7b_A RND3/RHOE small GTP-bin 92.4 0.077 2.6E-06 46.5 3.4 25 141-165 6-30 (184)
468 1zcb_A G alpha I/13; GTP-bindi 92.4 0.076 2.6E-06 53.6 3.8 24 140-163 31-54 (362)
469 1ksh_A ARF-like protein 2; sma 92.4 0.087 3E-06 45.9 3.6 26 140-165 16-41 (186)
470 3k1j_A LON protease, ATP-depen 92.3 0.064 2.2E-06 57.4 3.2 25 143-167 61-85 (604)
471 1m2o_B GTP-binding protein SAR 92.3 0.079 2.7E-06 47.1 3.3 25 141-165 22-46 (190)
472 1t9h_A YLOQ, probable GTPase E 92.3 0.032 1.1E-06 55.3 0.8 25 141-165 172-196 (307)
473 1z06_A RAS-related protein RAB 92.2 0.085 2.9E-06 46.3 3.4 25 141-165 19-43 (189)
474 1zj6_A ADP-ribosylation factor 92.2 0.1 3.5E-06 45.7 3.9 26 140-165 14-39 (187)
475 3t5g_A GTP-binding protein RHE 92.2 0.065 2.2E-06 46.4 2.6 24 142-165 6-29 (181)
476 3t1o_A Gliding protein MGLA; G 92.2 0.082 2.8E-06 46.0 3.2 24 143-166 15-38 (198)
477 2o8b_B DNA mismatch repair pro 92.2 0.068 2.3E-06 61.1 3.3 21 142-162 789-809 (1022)
478 1x3s_A RAS-related protein RAB 92.1 0.081 2.8E-06 46.1 3.1 24 142-165 15-38 (195)
479 2iw3_A Elongation factor 3A; a 92.1 0.073 2.5E-06 60.6 3.5 25 140-164 459-483 (986)
480 2gf9_A RAS-related protein RAB 92.1 0.081 2.8E-06 46.4 3.1 24 142-165 22-45 (189)
481 2p5s_A RAS and EF-hand domain 92.1 0.099 3.4E-06 46.5 3.7 26 140-165 26-51 (199)
482 4f4c_A Multidrug resistance pr 92.1 0.072 2.5E-06 62.3 3.4 43 140-185 442-484 (1321)
483 3oes_A GTPase rhebl1; small GT 92.0 0.091 3.1E-06 46.8 3.4 25 141-165 23-47 (201)
484 1f6b_A SAR1; gtpases, N-termin 92.0 0.095 3.2E-06 46.9 3.5 24 141-164 24-47 (198)
485 3dz8_A RAS-related protein RAB 92.0 0.089 3E-06 46.4 3.2 25 142-166 23-47 (191)
486 3e2i_A Thymidine kinase; Zn-bi 92.0 0.14 4.8E-06 48.6 4.8 39 140-180 26-64 (219)
487 1qhl_A Protein (cell division 91.9 0.028 9.7E-07 53.3 -0.1 24 143-166 28-51 (227)
488 1zbd_A Rabphilin-3A; G protein 91.9 0.085 2.9E-06 46.8 3.1 23 143-165 9-31 (203)
489 3g5u_A MCG1178, multidrug resi 91.9 0.068 2.3E-06 62.4 3.0 42 140-184 414-455 (1284)
490 1u0j_A DNA replication protein 91.9 0.1 3.4E-06 51.0 3.8 25 142-166 104-128 (267)
491 2dpy_A FLII, flagellum-specifi 91.9 0.084 2.9E-06 54.7 3.4 27 140-166 155-181 (438)
492 3k53_A Ferrous iron transport 91.9 0.1 3.6E-06 49.5 3.8 23 143-165 4-26 (271)
493 2fg5_A RAB-22B, RAS-related pr 91.9 0.089 3.1E-06 46.5 3.1 24 142-165 23-46 (192)
494 2bcg_Y Protein YP2, GTP-bindin 91.9 0.089 3.1E-06 46.8 3.2 24 142-165 8-31 (206)
495 3upu_A ATP-dependent DNA helic 91.9 0.088 3E-06 54.1 3.5 23 144-166 47-69 (459)
496 3nbx_X ATPase RAVA; AAA+ ATPas 91.8 0.061 2.1E-06 56.8 2.3 23 144-166 43-65 (500)
497 2fh5_B SR-beta, signal recogni 91.8 0.095 3.3E-06 46.9 3.3 25 141-165 6-30 (214)
498 2qu8_A Putative nucleolar GTP- 91.7 0.13 4.4E-06 47.0 4.1 26 140-165 27-52 (228)
499 3fkq_A NTRC-like two-domain pr 91.7 0.11 3.9E-06 51.9 4.0 39 142-182 144-182 (373)
500 2atv_A RERG, RAS-like estrogen 91.6 0.13 4.5E-06 45.4 3.9 26 140-165 26-51 (196)
No 1
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.76 E-value=1.8e-17 Score=162.93 Aligned_cols=169 Identities=20% Similarity=0.279 Sum_probs=122.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHH
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 218 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~ 218 (446)
..+|.+|+|+|+|||||||+++.|++.++ .+.++||+|.++...+-+..+... ++ ....+.....+.....
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~D~~R~~~~~~~~~~~~-~~---~~a~~~~~~~~~~~~~ 100 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDNDTFKQQHPNFDELVKL-YE---KDVVKHVTPYSNRMTE 100 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECTHHHHTTSTTHHHHHHH-HG---GGCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechHhHHhchhhHHHHHH-cc---chhhhhhhHHHHHHHH
Confidence 35699999999999999999999998862 357999999986543222222110 00 0111221222334456
Q ss_pred HHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 219 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
..+..+++.|.+||+|+++.....+.++.+. ++.
T Consensus 101 ~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~----------------------------------------------~~~ 134 (287)
T 1gvn_B 101 AIISRLSDQGYNLVIEGTGRTTDVPIQTATM----------------------------------------------LQA 134 (287)
T ss_dssp HHHHHHHHHTCCEEECCCCCCSHHHHHHHHH----------------------------------------------HHT
T ss_pred HHHHHHHhcCCeEEEECCCCCHHHHHHHHHH----------------------------------------------HHh
Confidence 6788889999999999999987655554332 234
Q ss_pred CCcEEEEEEEeCCHHHH----HHHHHHhhhhc---CcccchhhhhhHHHHHHHhHHHh--hcccceEEEeecC
Q 013289 299 KPYRIELVGVVCDAYLA----VVRGIRRAIMM---KRAVRVNSQLKSHKRFANAFRNY--CELVDNARLYCTN 362 (446)
Q Consensus 299 ~gY~I~lv~V~~d~ela----v~Rv~~R~~~g---GR~Vpv~~ql~r~~rf~~~~~~~--~~lvD~~~lydnn 362 (446)
.||.+.++++.+|++++ +.|...|...+ ||.+|.+.+...+.++..++..+ ...+|.+++||+.
T Consensus 135 ~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~~el~~~~~~d~v~v~d~~ 207 (287)
T 1gvn_B 135 KGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNRE 207 (287)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTT
T ss_pred CCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCC
Confidence 57888888999999999 88888888764 58999888888899999888754 5778999999854
No 2
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.62 E-value=4.2e-15 Score=132.22 Aligned_cols=175 Identities=15% Similarity=0.083 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH-hhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCCh--hhhHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMK-ESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD--MLQTAELVHQSSTDAA 217 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~-~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d--~~~~ae~v~~ea~~~a 217 (446)
+|.+|+|.|+|||||||+++.|++ .+ ++.+|+.|.++ ..+... +.. ..+..+. ........
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~-------~~~~i~~d~~r------~~~~~~--~~~~~~~~~~~~-~~~~~~~~ 64 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNP-------GFYNINRDDYR------QSIMAH--EERDEYKYTKKK-EGIVTGMQ 64 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHST-------TEEEECHHHHH------HHHTTS--CCGGGCCCCHHH-HHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcC-------CcEEecHHHHH------HHhhCC--Cccchhhhchhh-hhHHHHHH
Confidence 588999999999999999999998 44 57899988874 333321 000 0010000 11123344
Q ss_pred HHHHHHHH---hCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhh
Q 013289 218 SSLLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 294 (446)
Q Consensus 218 ~~li~~aL---~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~ 294 (446)
...+..++ ..|.+||+|+++....+++.+...+
T Consensus 65 ~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~-------------------------------------------- 100 (181)
T 1ly1_A 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFA-------------------------------------------- 100 (181)
T ss_dssp HHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHH--------------------------------------------
Confidence 56778888 8899999999988776655543322
Q ss_pred hhcCCCcEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHhHHHhhcccceEEEeecCCCCCCCeEEEEE
Q 013289 295 VFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWK 374 (446)
Q Consensus 295 ~~~~~gY~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~~~~~~~lvD~~~lydnn~~g~pp~lIa~~ 374 (446)
...|+.+.+++++||++++++|...|.. +.++.+.+.+++..|.... ..|.. +.|++ .|..++.+.
T Consensus 101 --~~~~~~~~~i~l~~~~~~~~~R~~~R~~---~~~~~~~i~~~~~~~~~~~-----~~~~~-~id~~---~~~~v~~~i 166 (181)
T 1ly1_A 101 --KEYGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREYL-----GLPVY-NGTPG---KPKAVIFDV 166 (181)
T ss_dssp --HHHTCEEEEEECCCCHHHHHHHHTTCGG---GCCCHHHHHHHHHHHHHHH-----TCCCC------------------
T ss_pred --HHcCCCEEEEEEeCCHHHHHHHHhcccc---CCCCHHHHHHHHHHhhccC-----CCCcc-ccCCC---CCceeeehh
Confidence 1234556778899999999999998864 5677777777676665441 12322 23422 245677777
Q ss_pred eCCcceeeChhhHHH
Q 013289 375 DGDSNLLVDSDEIKC 389 (446)
Q Consensus 375 ~~~~~li~d~~~y~~ 389 (446)
++......++++||.
T Consensus 167 ~~~l~~~~~r~~~~~ 181 (181)
T 1ly1_A 167 DGTLAKMNGRGPYDL 181 (181)
T ss_dssp ---------------
T ss_pred hhhhhccCCCCCCCC
Confidence 766555567777763
No 3
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.58 E-value=6.2e-14 Score=134.38 Aligned_cols=167 Identities=22% Similarity=0.332 Sum_probs=105.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHH
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 218 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~ 218 (446)
.++|.+|+|+|+|||||||+++.|++.++ .+.++++.|.++...+-+..+... .+... .+...........
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~r~~~~~~~~i~~~-~g~~~---~~~~~~~~~~~~~ 99 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSFRSQHPHYLELQQE-YGKDS---VEYTKDFAGKMVE 99 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGGGTTSTTHHHHHTT-CSSTT---HHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHHHHhchhHHHHHHH-cCchH---HHHhhHHHHHHHH
Confidence 36689999999999999999999999874 357899999997643333333332 11111 1221111334445
Q ss_pred HHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 219 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
.++..++..|.+||+|+++.....+..+.+. ++.
T Consensus 100 ~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~----------------------------------------------l~~ 133 (253)
T 2p5t_B 100 SLVTKLSSLGYNLLIEGTLRTVDVPKKTAQL----------------------------------------------LKN 133 (253)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHH----------------------------------------------HHH
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHH----------------------------------------------HHH
Confidence 6777788899999999999876554444332 234
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhhhh-------cCcccchhhhhhHHHHHHHhHH--HhhcccceEEEee
Q 013289 299 KPYRIELVGVVCDAYLAVVRGIRRAIM-------MKRAVRVNSQLKSHKRFANAFR--NYCELVDNARLYC 360 (446)
Q Consensus 299 ~gY~I~lv~V~~d~elav~Rv~~R~~~-------gGR~Vpv~~ql~r~~rf~~~~~--~~~~lvD~~~lyd 360 (446)
.|+.+.++++.+|++++..|...|... .|+.+|.+.....+..+.-+.. .....+|.+..|.
T Consensus 134 ~g~~v~lv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~t~~~~~~~~~~~I~~~l 204 (253)
T 2p5t_B 134 KGYEVQLALIATKPELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIYQ 204 (253)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHHHHHHTTTSCSCC-------CCCTTHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCcEEEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhHHHHHHHHhhccCCCeEEEEe
Confidence 678888999999999999999999753 3444554333233333433332 2345577777666
No 4
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.50 E-value=4.2e-13 Score=130.18 Aligned_cols=195 Identities=15% Similarity=0.079 Sum_probs=118.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC--CCCChhhhHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GHHDDMLQTAELVHQSSTDAAS 218 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~--g~~~d~~~~ae~v~~ea~~~a~ 218 (446)
+|.+|+|.|+|||||||+++.|++.+ .++.+|+.|.++ ..+... +.........+. .......
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~------~~~~~i~~D~~r------~~~~~~~~g~~~~~~~~~~~---~~~~~~~ 65 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKN------PGFYNINRDDYR------QSIMAHEERDEYKYTKKKEG---IVTGMQF 65 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHS------TTEEEECHHHHH------HHHTTSCCCC---CCHHHHH---HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhC------CCcEEecccHHH------HHhccCCcccccccchhhhh---HHHHHHH
Confidence 47899999999999999999999864 258899999774 333321 110000000111 1123344
Q ss_pred HHHHHHH---hCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhh
Q 013289 219 SLLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQV 295 (446)
Q Consensus 219 ~li~~aL---~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~ 295 (446)
..+..++ ..|.+||+|+++.....++.+...+
T Consensus 66 ~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~--------------------------------------------- 100 (301)
T 1ltq_A 66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFA--------------------------------------------- 100 (301)
T ss_dssp HHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHH---------------------------------------------
Confidence 5677788 8899999999998876665543332
Q ss_pred hcCCCcEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHhHHHhhcccceEEEeecCCCCCCCeEEEEEe
Q 013289 296 FSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTNAVGGPPRLIAWKD 375 (446)
Q Consensus 296 ~~~~gY~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~~~~~~~lvD~~~lydnn~~g~pp~lIa~~~ 375 (446)
...|+.+.++++++|++++++|...|.. |.++.+.+.+++++|..... ..+ +++++ ..+..++.+.+
T Consensus 101 -~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~~~~e~i~~~~~~~~~~~~----~~~--~~~~~---~~~~~i~iD~d 167 (301)
T 1ltq_A 101 -KEYGWKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREYLG----LPV--YNGTP---GKPKAVIFDVD 167 (301)
T ss_dssp -HHTTCEEEEEECCCCHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHHHT----CCC--CCCCT---TSCEEEEEETB
T ss_pred -HHcCCcEEEEEEECCHHHHHHHHHhccC---CCCCHHHHHHHHHHHhcccC----Ccc--eeccc---cccceEEEeCC
Confidence 2345667789999999999999999863 78888887777766554321 111 11221 12233444444
Q ss_pred CCcceeeChhhHHHHHhhc-CCChhhhhhHhhhc
Q 013289 376 GDSNLLVDSDEIKCLTRVG-SLNADADSVYELHS 408 (446)
Q Consensus 376 ~~~~li~d~~~y~~~~~~~-~ln~~a~~~~ely~ 408 (446)
++...+..+.+|+...... .+.+.+..+++...
T Consensus 168 gtl~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~ 201 (301)
T 1ltq_A 168 GTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYA 201 (301)
T ss_dssp TTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHH
T ss_pred CCcccccCCCchhhhhccccCCChHHHHHHHHHH
Confidence 4433333444443333322 55666666655443
No 5
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.39 E-value=3.3e-12 Score=115.01 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=82.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
++|.+|+|.|+|||||||+++.|++.++ +.+++.|.+++. +...+ . .. +..+ ........+.....
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-------~~~i~~D~~~~~--~~~~~-~--~~-~~~~-~~~~~~~~~~~~~~ 68 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR-------LPLLSKDAFKEV--MFDGL-G--WS-DREW-SRRVGATAIMMLYH 68 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT-------CCEEEHHHHHHH--HHHHH-C--CC-SHHH-HHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC-------CeEecHHHHHHH--HHHhc-C--cc-chHH-HHHhhHHHHHHHHH
Confidence 4689999999999999999999999874 678999988532 22222 1 11 1111 11112223344555
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.+..+++.|.+||+|+++........+.++ ....
T Consensus 69 ~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l----------------------------------------------~~~~ 102 (193)
T 2rhm_A 69 TAATILQSGQSLIMESNFRVDLDTERMQNL----------------------------------------------HTIA 102 (193)
T ss_dssp HHHHHHHTTCCEEEEECCCHHHHHHHHHHH----------------------------------------------HHHS
T ss_pred HHHHHHhCCCeEEEecCCCCHHHHHHHHHH----------------------------------------------HHhc
Confidence 677788899999999988321111111100 1123
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhhhcCc
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAIMMKR 328 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~~gGR 328 (446)
++...++++++|++++.+|...|...+.|
T Consensus 103 ~~~~~~v~l~~~~e~~~~R~~~R~~~~~r 131 (193)
T 2rhm_A 103 PFTPIQIRCVASGDVLVERILSRIAQGAR 131 (193)
T ss_dssp CCEEEEEEEECCHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEEEeCCHHHHHHHHHHhcCcccc
Confidence 34567789999999999999999765444
No 6
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.38 E-value=2.5e-12 Score=132.57 Aligned_cols=115 Identities=22% Similarity=0.183 Sum_probs=88.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..|.+|+|+|+|||||||+++.|++.+ ++.+|+.|.++.. . .+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~~----~------------------------~~~~ 300 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-------GYVHVNRDTLGSW----Q------------------------RCVS 300 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-------TCEECCGGGSCSH----H------------------------HHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-------CcEEEccchHHHH----H------------------------HHHH
Confidence 568999999999999999999999986 4789999998321 1 1122
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.+..++..|.+||+|+++.....+..++.+++ ..
T Consensus 301 ~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~----------------------------------------------~~ 334 (416)
T 3zvl_A 301 SCQAALRQGKRVVIDNTNPDVPSRARYIQCAK----------------------------------------------DA 334 (416)
T ss_dssp HHHHHHHTTCCEEEESCCCSHHHHHHHHHHHH----------------------------------------------HH
T ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH----------------------------------------------Hc
Confidence 55667889999999999988877776654432 23
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhhhcCcc--cchhhh
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAIMMKRA--VRVNSQ 335 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~~gGR~--Vpv~~q 335 (446)
|+.+.++++++|.+++++|...|...+++. ++.+.+
T Consensus 335 ~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~ 372 (416)
T 3zvl_A 335 GVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVM 372 (416)
T ss_dssp TCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHH
T ss_pred CCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHH
Confidence 456778899999999999999998866553 444443
No 7
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.33 E-value=1.8e-10 Score=103.21 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCC-Chh---------hhHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDM---------LQTAELVH 210 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~-~d~---------~~~ae~v~ 210 (446)
+|.+|+|.|+|||||||+++.|++.++ ..+|+.|.+.. ....+.+.+ +.. ....+.++
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 69 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG-------YTHLSAGELLR-----DERKNPDSQYGELIEKYIKEGKIVPVEITI 69 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHHHH-----HHHHCTTSTTHHHHHHHHHTTCCCCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-------CeEEeHHHHHH-----HHHhccCChHHHHHHHHHHCCCcCCHHHHH
Confidence 589999999999999999999999874 68999987621 111110000 000 00001111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhh
Q 013289 211 QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQK 290 (446)
Q Consensus 211 ~ea~~~a~~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~ 290 (446)
......+...+ .++..|..||+|+.......++.+...+
T Consensus 70 ~~l~~~~~~~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~~---------------------------------------- 108 (196)
T 1tev_A 70 SLLKREMDQTM-AANAQKNKFLIDGFPRNQDNLQGWNKTM---------------------------------------- 108 (196)
T ss_dssp HHHHHHHHHHH-HHCTTCCEEEEESCCCSHHHHHHHHHHH----------------------------------------
T ss_pred HHHHHHHHhhh-ccccCCCeEEEeCCCCCHHHHHHHHHHh----------------------------------------
Confidence 11111111121 2334588999998877654333221110
Q ss_pred hhhhhhcCCCcEEEEEEEeCCHHHHHHHHHHhhhhcCccc-chhhhhhHHHHHHHh
Q 013289 291 ENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRAV-RVNSQLKSHKRFANA 345 (446)
Q Consensus 291 ~~~~~~~~~gY~I~lv~V~~d~elav~Rv~~R~~~gGR~V-pv~~ql~r~~rf~~~ 345 (446)
...+..-.++++++|++++++|...|....+|.. ..+.+.+++..+.+.
T Consensus 109 ------~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~ 158 (196)
T 1tev_A 109 ------DGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS 158 (196)
T ss_dssp ------TTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHH
T ss_pred ------cccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 1111112468889999999999999987666654 244444444444443
No 8
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.30 E-value=8.9e-11 Score=104.79 Aligned_cols=120 Identities=12% Similarity=0.094 Sum_probs=78.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
+.+.+++|.|+|||||||+++.|+..+ +.++|+.|.+.....+.+...+ ..... .. ..........
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~~~~~~~~~~~~g--~~~~~---~~--~~~~~~~~~~ 71 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFLHPRRNIEKMASG--EPLND---DD--RKPWLQALND 71 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGGCCHHHHHHHHTT--CCCCH---HH--HHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccccchHHHHHhhcC--cCCCc---cc--cccHHHHHHH
Confidence 457899999999999999999999886 4789999998643222221122 11111 00 0111223344
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
++..++..|.++|+|+++..+..++.+ +..
T Consensus 72 ~~~~~~~~~~~~vi~~~~~~~~~~~~l--------------------------------------------------~~~ 101 (175)
T 1knq_A 72 AAFAMQRTNKVSLIVCSALKKHYRDLL--------------------------------------------------REG 101 (175)
T ss_dssp HHHHHHHHCSEEEEECCCCSHHHHHHH--------------------------------------------------HTT
T ss_pred HHHHHHhcCCcEEEEeCchHHHHHHHH--------------------------------------------------Hhc
Confidence 566667789999999887654333211 111
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhh
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~ 323 (446)
+..+.+++++||++++++|...|.
T Consensus 102 ~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 102 NPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp CTTEEEEEEECCHHHHHHHHHTST
T ss_pred CCCEEEEEEECCHHHHHHHHHhcc
Confidence 223567899999999999999885
No 9
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.27 E-value=3.7e-10 Score=100.95 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=33.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.+|+|.|+|||||||+++.|++.++ +.+||.|++
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d~~ 40 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG-------WVHLSAGDL 40 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhC-------CeEeeHHHH
Confidence 4688999999999999999999999874 789999876
No 10
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.26 E-value=7.2e-11 Score=108.15 Aligned_cols=118 Identities=18% Similarity=0.136 Sum_probs=77.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
.+|.+|+|+|+|||||||+++.|++.++ +.+|+.|.+..... ...+.. +..... .. .. ....
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg-------~~~i~~d~~~~~~~-~~~~~~-g~~~~~---~~--~~----~~~~ 77 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG-------YPFIEGDALHPPEN-IRKMSE-GIPLTD---DD--RW----PWLA 77 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT-------CCEEEGGGGCCHHH-HHHHHH-TCCCCH---HH--HH----HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CEEEeCCcCcchhh-HHHHhc-CCCCCc---hh--hH----HHHH
Confidence 3478999999999999999999999874 78999999853211 112211 111110 00 01 1112
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.+...+..|.+||+|+++..+..++.+.. ..
T Consensus 78 ~l~~~~~~~~~vivd~~~~~~~~~~~l~~-------------------------------------------------~~ 108 (202)
T 3t61_A 78 AIGERLASREPVVVSCSALKRSYRDKLRE-------------------------------------------------SA 108 (202)
T ss_dssp HHHHHHTSSSCCEEECCCCSHHHHHHHHH-------------------------------------------------TS
T ss_pred HHHHHHhcCCCEEEECCCCCHHHHHHHHH-------------------------------------------------hc
Confidence 44455688999999999887655543311 11
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhh
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAI 324 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~ 324 (446)
+..+.+++++||++++++|...|..
T Consensus 109 ~~~~~vi~l~~~~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 109 PGGLAFVFLHGSESVLAERMHHRTG 133 (202)
T ss_dssp TTCCEEEEEECCHHHHHHHHHHHHS
T ss_pred CCCeEEEEEeCCHHHHHHHHHHhhc
Confidence 2224578899999999999999873
No 11
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.25 E-value=5e-10 Score=102.24 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=90.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHH-------HH
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELV-------HQ 211 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v-------~~ 211 (446)
...|.+|+|.|++||||||+++.|++.+ +..+|+.|.+- +......+.+.. ....... ..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~-------g~~~i~~d~~~-----~~~~~~~~~~~~-~~i~~~~~~g~~~~~~ 78 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY-------SFVHLSAGDLL-----RAEQGRAGSQYG-ELIKNCIKEGQIVPQE 78 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS-------SCEEEEHHHHH-----HHHHHSTTCSCH-HHHHHHHHTTCCCCHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc-------CceEEeHHHHH-----HHHHhccCCHHH-HHHHHHHHcCCcCCHH
Confidence 3668899999999999999999999987 47899988762 111111110000 0000000 01
Q ss_pred HHHHHHHHHHHHHHhCC-CcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhh
Q 013289 212 SSTDAASSLLVTALNEG-RDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQK 290 (446)
Q Consensus 212 ea~~~a~~li~~aL~~G-~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~ 290 (446)
.........+...+..| ..+|+|+..........+ . .
T Consensus 79 ~~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~-~---------------------------------~-------- 116 (203)
T 1ukz_A 79 ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISF-E---------------------------------R-------- 116 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHH-H---------------------------------H--------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHH-H---------------------------------H--------
Confidence 11223344555677777 478889865443221110 0 0
Q ss_pred hhhhhhcCCCcEEEEEEEeCCHHHHHHHHHHhhhhcCcc-cchhhhhhHHHHHHHhH-H--HhhcccceEEEeecC
Q 013289 291 ENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRAIMMKRA-VRVNSQLKSHKRFANAF-R--NYCELVDNARLYCTN 362 (446)
Q Consensus 291 ~~~~~~~~~gY~I~lv~V~~d~elav~Rv~~R~~~gGR~-Vpv~~ql~r~~rf~~~~-~--~~~~lvD~~~lydnn 362 (446)
.... + -.++++++|++++++|+..|....|+. ...+.+..++..+.+.. + .+....|.++..|++
T Consensus 117 ----~~~~-~--~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~ 185 (203)
T 1ukz_A 117 ----DIVE-S--KFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCD 185 (203)
T ss_dssp ----HTCC-C--SEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECS
T ss_pred ----hcCC-C--CEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECC
Confidence 0011 1 136889999999999999998766664 23444545555444331 1 112345666656644
No 12
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.25 E-value=9e-11 Score=112.89 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=83.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~l 220 (446)
+|.+|+|+|+|||||||+++.|++.+.. .+-.+++++.|.++.. +.+ +. ... ... ........
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~--~g~~~i~~~~D~~~~~------l~~--~~--~~~-e~~----~~~~~~~~ 65 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSK--NNIDVIVLGSDLIRES------FPV--WK--EKY-EEF----IKKSTYRL 65 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECTHHHHTT------SSS--CC--GGG-HHH----HHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh--CCCEEEEECchHHHHH------Hhh--hh--HHH-HHH----HHHHHHHH
Confidence 4789999999999999999999987310 0112344598887432 221 11 100 011 11222345
Q ss_pred HHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCC
Q 013289 221 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKP 300 (446)
Q Consensus 221 i~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~g 300 (446)
+..+++. ..||+|+++..+.++..+...+ ...|
T Consensus 66 i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a----------------------------------------------~~~~ 98 (260)
T 3a4m_A 66 IDSALKN-YWVIVDDTNYYNSMRRDLINIA----------------------------------------------KKYN 98 (260)
T ss_dssp HHHHHTT-SEEEECSCCCSHHHHHHHHHHH----------------------------------------------HHTT
T ss_pred HHHHhhC-CEEEEeCCcccHHHHHHHHHHH----------------------------------------------HHcC
Confidence 6667777 8999999988776665554332 2234
Q ss_pred cEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHH
Q 013289 301 YRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHK 340 (446)
Q Consensus 301 Y~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~ 340 (446)
+...+++++||++++.+|...|. +.++.+.+.+.+.
T Consensus 99 ~~~~vi~l~~~~e~~~~R~~~R~----~~~~~~~l~~~~~ 134 (260)
T 3a4m_A 99 KNYAIIYLKASLDVLIRRNIERG----EKIPNEVIKKMYE 134 (260)
T ss_dssp CEEEEEEEECCHHHHHHHHHHTT----CSSCHHHHHHHHH
T ss_pred CCEEEEEEeCCHHHHHHHHHhCC----CCCCHHHHHHHHH
Confidence 55677899999999999998874 5555544444333
No 13
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.23 E-value=6.1e-11 Score=105.74 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcC--C--CCChh-hhHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--G--HHDDM-LQTAELVHQSSTD 215 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~--g--~~~d~-~~~ae~v~~ea~~ 215 (446)
+|.+|+|+|+|||||||+++.|++.++ ..++.++.|.++...+ ..+... + +.... .+..+. ......
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~-----~~~~~~~~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 73 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP-----EPWLAFGVDSLIEAMP--LKMQSAEGGIEFDADGGVSIGPE-FRALEG 73 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS-----SCEEEEEHHHHHHHSC--GGGGTSTTSEEECTTSCEEECHH-HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEeccchHhhhcc--hhhccchhhccccCCCccccchh-HHHHHH
Confidence 578999999999999999999999874 2466678887632100 001000 0 00000 000011 112222
Q ss_pred HHHHHHHHHHhCCCcEEEeCcCC-CHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhh
Q 013289 216 AASSLLVTALNEGRDVIMDGTLS-WVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQ 294 (446)
Q Consensus 216 ~a~~li~~aL~~G~sVViD~T~s-~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~ 294 (446)
.....+...++.|.+||+|+++. .+..++.+.+.
T Consensus 74 ~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~--------------------------------------------- 108 (178)
T 1qhx_A 74 AWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSF--------------------------------------------- 108 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHH---------------------------------------------
Confidence 22334566778899999999885 33333322211
Q ss_pred hhcCCCcEEEEEEEeCCHHHHHHHHHHhh
Q 013289 295 VFSRKPYRIELVGVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 295 ~~~~~gY~I~lv~V~~d~elav~Rv~~R~ 323 (446)
. .++.+.++++.||++++.+|...|.
T Consensus 109 -~--~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 109 -V--GDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp -H--TTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred -h--cCCcEEEEEEECCHHHHHHHHHhhC
Confidence 1 1223556788999999999998874
No 14
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.21 E-value=5.3e-10 Score=100.76 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++|.+|++.|+|||||||+++.|++.++ ..+|+.|.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~-------~~~i~~d~~ 43 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG-------YTHLSTGDL 43 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHHHH
Confidence 3578999999999999999999999874 689998876
No 15
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.20 E-value=2.9e-10 Score=120.75 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChh----hhHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDM----LQTAELVHQSSTD 215 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~----~~~ae~v~~ea~~ 215 (446)
.+|.+|+|+|+|||||||+++.|++.++|. ..++.+|+.|+++ +.+.+.....+. ........+....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~--~~d~~v~s~D~~r------~~~~~~~~~~~~f~~~~~~~~~~re~~~~ 104 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWI--GVPTKVFNVGEYR------REAVKQYSSYNFFRPDNEEAMKVRKQCAL 104 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------HHHHSCCCCGGGGCTTCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCCeEEecccHHH------HHhccCCccccccCcccHHHHHHHHHHHH
Confidence 568999999999999999999999988762 2356788988874 334332100000 0001111111211
Q ss_pred HHHHHHHHHH--hCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhh
Q 013289 216 AASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENR 293 (446)
Q Consensus 216 ~a~~li~~aL--~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~ 293 (446)
.+...+...+ ..|..||+|+|+.....++.+.+.++
T Consensus 105 ~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~------------------------------------------ 142 (520)
T 2axn_A 105 AALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAK------------------------------------------ 142 (520)
T ss_dssp HHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHH------------------------------------------
T ss_pred HHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHH------------------------------------------
Confidence 1222334445 67999999999999888877655432
Q ss_pred hhhcCCCcEEEEEEEeCC-HHHHHHHHHHhhhh
Q 013289 294 QVFSRKPYRIELVGVVCD-AYLAVVRGIRRAIM 325 (446)
Q Consensus 294 ~~~~~~gY~I~lv~V~~d-~elav~Rv~~R~~~ 325 (446)
..|+.+.++.+.|+ +++..+|+..|...
T Consensus 143 ----~~g~~v~~l~~~~~d~e~i~~ri~~r~~~ 171 (520)
T 2axn_A 143 ----ENDFKAFFIESVCDDPTVVASNIMEVKIS 171 (520)
T ss_dssp ----HHTCEEEEEEEECCCHHHHHHHHHHHTTT
T ss_pred ----HcCCeEEEEEEeCChHHHHHHHHHhhhhc
Confidence 23456667788887 77777777777643
No 16
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.19 E-value=3.9e-10 Score=103.57 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=79.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..+.+|+|.|+|||||||+++.|+..+ +.++|+.|.+......++...+ ..... .. ..........
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g--~~~~~---~~--~~~~~~~~~~ 92 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRG--IPLTD---ED--RWPWLRSLAE 92 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTT--CCCCH---HH--HHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcC--CCCCC---cc--cccHHHHHHH
Confidence 457899999999999999999999887 4789999998643222222222 11111 01 1112233445
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.+...+..|.++|+|+++..+..++.+. + ...
T Consensus 93 ~~~~~~~~g~~viid~~~~~~~~~~~l~----------------------------------~--------------~~~ 124 (200)
T 4eun_A 93 WMDARADAGVSTIITCSALKRTYRDVLR----------------------------------E--------------GPP 124 (200)
T ss_dssp HHHHHHHTTCCEEEEECCCCHHHHHHHT----------------------------------T--------------SSS
T ss_pred HHHHHHhcCCCEEEEchhhhHHHHHHHH----------------------------------H--------------hCC
Confidence 6666778899999999887764443220 0 011
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhh
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAI 324 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~ 324 (446)
.+.+++++||+++.++|...|..
T Consensus 125 --~~~vv~l~~~~e~l~~Rl~~R~~ 147 (200)
T 4eun_A 125 --SVDFLHLDGPAEVIKGRMSKREG 147 (200)
T ss_dssp --CCEEEEEECCHHHHHHHHTTCSC
T ss_pred --ceEEEEEeCCHHHHHHHHHhccc
Confidence 24568899999999999988763
No 17
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.18 E-value=1.1e-10 Score=104.24 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=68.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEE-eCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvI-daD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
+|.+|+|.|+|||||||+++.|++.++ ..++ ++|.+. +.++..+. .+.. +..+.... ......
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~-------~~~i~d~~~~g--~~i~~~~~-~g~~-~~~~~~~~-----~~~~~~ 67 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP-------GSFVFEPEEMG--QALRKLTP-GFSG-DPQEHPMW-----IPLMLD 67 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST-------TCEECCTHHHH--HHHHHTST-TCCS-CGGGSTTH-----HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC-------CCEEEchhhhH--HHHHHhCc-cccc-hhhhhHHH-----HHHHHH
Confidence 578999999999999999999999875 2344 654331 11222121 1111 11111110 011223
Q ss_pred HHHHHHhC-CCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 220 LLVTALNE-GRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 220 li~~aL~~-G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
.+..++.. |..||+|+++....+++.+...+ ..
T Consensus 68 ~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l----------------------------------------------~~ 101 (183)
T 2vli_A 68 ALQYASREAAGPLIVPVSISDTARHRRLMSGL----------------------------------------------KD 101 (183)
T ss_dssp HHHHHHHHCSSCEEEEECCCCHHHHHHHHHHH----------------------------------------------HH
T ss_pred HHHHHHHhCCCcEEEeeeccCHHHHHHHHHHH----------------------------------------------Hh
Confidence 44455565 88999999998876654443221 11
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhh
Q 013289 299 KPYRIELVGVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 299 ~gY~I~lv~V~~d~elav~Rv~~R~ 323 (446)
.|+.+.+++++||++++++|...|.
T Consensus 102 ~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 102 RGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp TTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred cCCceEEEEEeCCHHHHHHHHHhcc
Confidence 2333455889999999999999885
No 18
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.16 E-value=1e-09 Score=95.71 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCC-ChhhhHHHHHHHH-HHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQS-STDAASSL 220 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~-~d~~~~ae~v~~e-a~~~a~~l 220 (446)
.+|+|.|+|||||||+++.| +.+ ++.+++.|++- +..+...+.. .+........... .......+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~-------g~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER-------GAKVIVMSDVV-----RKRYSIEAKPGERLMDFAKRLREIYGDGVVARL 68 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT-------TCEEEEHHHHH-----HHHHHHHC---CCHHHHHHHHHHHHCTTHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC-------CCcEEEHhHHH-----HHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHH
Confidence 48999999999999999999 776 46788876542 2222221100 0111111111111 01223445
Q ss_pred HHHHH--hCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 221 LVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 221 i~~aL--~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
+...+ ..+..||+|+. ..+..++.+... ..
T Consensus 69 ~~~~l~~~~~~~vi~dg~-~~~~~~~~l~~~-----------------------------------------------~~ 100 (179)
T 3lw7_A 69 CVEELGTSNHDLVVFDGV-RSLAEVEEFKRL-----------------------------------------------LG 100 (179)
T ss_dssp HHHHHCSCCCSCEEEECC-CCHHHHHHHHHH-----------------------------------------------HC
T ss_pred HHHHHHhcCCCeEEEeCC-CCHHHHHHHHHH-----------------------------------------------hC
Confidence 66667 77889999997 554443332111 01
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHH-HhHHHhhcccceE
Q 013289 299 KPYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFA-NAFRNYCELVDNA 356 (446)
Q Consensus 299 ~gY~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~-~~~~~~~~lvD~~ 356 (446)
. ...++++++|+++.++|...|..... ....+....++.+.. .....+...+|..
T Consensus 101 ~--~~~~i~l~~~~~~~~~R~~~R~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~ad~v 156 (179)
T 3lw7_A 101 D--SVYIVAVHSPPKIRYKRMIERLRSDD-SKEISELIRRDREELKLGIGEVIAMADYI 156 (179)
T ss_dssp S--CEEEEEEECCHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHTHHHHHHTCSEE
T ss_pred C--CcEEEEEECCHHHHHHHHHhccCCCC-cchHHHHHHHHHhhhccChHhHHHhCCEE
Confidence 1 24678999999999999999864311 122333344332211 1133455666644
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.15 E-value=7.3e-10 Score=99.40 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++.+|++.|+|||||||+++.|++.++ ..+++.|++
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~-------~~~i~~d~~ 38 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG-------FKKLSTGDI 38 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT-------CEEECHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CeEecHHHH
Confidence 478999999999999999999999874 789998765
No 20
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.14 E-value=3.8e-10 Score=101.92 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.+|+|.|+|||||||+++.|++.++ +.+|+.|.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d~~ 46 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG-------FTHLSTGEL 46 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC-------CeEEcHHHH
Confidence 3578999999999999999999999873 789998876
No 21
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.05 E-value=3e-09 Score=97.98 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|+|.|+|||||||+++.|++.++ +.+|++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-------~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE-------IPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcEeeHHHH
Confidence 478999999999999999999874 679998766
No 22
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.02 E-value=2.5e-09 Score=96.60 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=54.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
+++.+|++.|+|||||||+++.|+..+.. .+..+.+++.|.++. .+.+. ..... .+ ..........
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~--~~~~~~~~~~d~~~~------~~~~~-~~~~~---~~--r~~~~~~~~~ 76 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK--EGYRVEVLDGDWART------TVSEG-AGFTR---EE--RLRHLKRIAW 76 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHHT------TTTTT-CCCCH---HH--HHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEeeHHHHHH------HHhhc-cCCCh---hh--HHHHHHHHHH
Confidence 46789999999999999999999988642 123367888887743 23221 11011 11 1111111222
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHH
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVE 244 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re 244 (446)
....++..|..||.|++......++
T Consensus 77 ~~~~~~~~g~~vi~d~~~~~~~~r~ 101 (186)
T 2yvu_A 77 IARLLARNGVIVICSFVSPYKQARN 101 (186)
T ss_dssp HHHHHHTTTCEEEEECCCCCHHHHH
T ss_pred HHHHHHhCCCEEEEeCccccHHHHH
Confidence 3344567888899998776654443
No 23
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.02 E-value=3e-09 Score=98.15 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|+|.|+|||||||+++.|++.+ ++.+|++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-------~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-------GIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-------SCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-------CCcEEeHHHH
Confidence 47899999999999999999987 4789998766
No 24
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.97 E-value=1.2e-08 Score=93.18 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.+|+|.|+|||||||+++.|++.++ ..+|+.|++
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~-------~~~i~~d~~ 54 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG-------IPQISTGEL 54 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CcEEehhHH
Confidence 6688999999999999999999999874 578998765
No 25
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.94 E-value=1.2e-08 Score=99.47 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.+|+|+|++||||||+++.|+ .+ ++.+|++|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~l-------g~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NL-------GAYIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HH-------TCEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HC-------CCcEEehhHH
Confidence 568999999999999999999999 45 4789999987
No 26
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.93 E-value=4e-08 Score=86.26 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|+|.|+|||||||+++.|++.++ +.+++.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~-------~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK-------YPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC-------CCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-------CeeecCccc
Confidence 4799999999999999999999974 679999987
No 27
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.92 E-value=6e-08 Score=86.75 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=50.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccc---hHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET---DVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 220 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~---d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~l 220 (446)
+|++.|++||||||+++.|++.+. ..++.++++|..... ..+.+.+.. |.. ++....-+...+........
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~----~~g~~~i~~d~~~~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~~~l~~~ 75 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK----QKGYFVSLYREPGGTKVGEVLREILLT-EEL-DERTELLLFEASRSKLIEEK 75 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH----HTTCCEEEEESSCSSHHHHHHHHHHHH-SCC-CHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH----HCCCeEEEEeCCCCCchHHHHHHHHcC-CCC-CHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999762 114668888764322 112222222 111 11111111111122333456
Q ss_pred HHHHHhCCCcEEEeCc
Q 013289 221 LVTALNEGRDVIMDGT 236 (446)
Q Consensus 221 i~~aL~~G~sVViD~T 236 (446)
+..++..|..||+|..
T Consensus 76 i~~~l~~~~~vi~dr~ 91 (195)
T 2pbr_A 76 IIPDLKRDKVVILDRF 91 (195)
T ss_dssp HHHHHHTTCEEEEESC
T ss_pred HHHHHhCCCEEEECcc
Confidence 6677889999999953
No 28
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.90 E-value=3.6e-09 Score=100.32 Aligned_cols=129 Identities=18% Similarity=0.262 Sum_probs=79.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..-..|.++|++||||||+++.|++ + |+.+||+|.+ .+++...+.+ . . .
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~-------g~~vidaD~i------a~~l~~~~~~--~-~------~-------- 55 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-R-------GASLVDTDLI------AHRITAPAGL--A-M------P-------- 55 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-T-------TCEEEEHHHH------HHHHTSTTCT--T-H------H--------
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-C-------CCcEEECcHH------HHHHhcCCcH--H-H------H--------
Confidence 3457899999999999999999987 5 4899999987 3445543211 0 0 0
Q ss_pred HHHHHHhCCCcEEE-eCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 220 LLVTALNEGRDVIM-DGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 220 li~~aL~~G~sVVi-D~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
.+. -..|..++- |+++.++...+.++...... ..+|.+-+|....+.. .+.. ...
T Consensus 56 ~i~--~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~-----------------~~L~~i~HP~I~~~~~-~~~~----~~~ 111 (210)
T 4i1u_A 56 AIE--QTFGPAFVAADGSLDRARMRALIFSDEDAR-----------------RRLEAITHPLIRAETE-REAR----DAQ 111 (210)
T ss_dssp HHH--HHHCGGGBCTTSSBCHHHHHHHHHHCHHHH-----------------HHHHHHHHHHHHHHHH-HHHH----TCC
T ss_pred HHH--HHhChhhcCCCCCCcHHHHHHHHhCCHHHH-----------------HHHHHHhhHHHHHHHH-HHHH----hcC
Confidence 111 113555553 67888877777766543322 1344455554332111 0000 011
Q ss_pred CCcEE-----------------EEEEEeCCHHHHHHHHHHhh
Q 013289 299 KPYRI-----------------ELVGVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 299 ~gY~I-----------------~lv~V~~d~elav~Rv~~R~ 323 (446)
.+|.| .+++|+||++++++|++.|.
T Consensus 112 ~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd 153 (210)
T 4i1u_A 112 GPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN 153 (210)
T ss_dssp SSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC
Confidence 22322 47889999999999999997
No 29
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.90 E-value=2e-08 Score=95.61 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.+|+|.|+|||||||+++.|++.+ +..+|++|++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-------g~~~is~~~~ 63 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-------CYCHLSTGDL 63 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH-------CCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-------CCeEEecHHH
Confidence 468999999999999999999999987 4789998765
No 30
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.87 E-value=3.3e-08 Score=88.62 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
++..|++.|+|||||||+++.|++.++ +.+||.|.+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~-------~~~i~~d~~~ 40 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK-------RILYDSDKEI 40 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC-------CCEEEHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-------CCEEEChHHH
Confidence 356889999999999999999999974 6899999873
No 31
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.83 E-value=2.3e-09 Score=98.75 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
...+.+|+|+|||||||||+++.|++.+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568899999999999999999999876
No 32
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.83 E-value=1.6e-08 Score=97.19 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
.+|+|+|||||||||+++.|++.+ ++.+|+.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~-------~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET-------GWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-------CCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC-------CCeEEeccHHh
Confidence 489999999999999999999987 46899999873
No 33
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.83 E-value=4.2e-08 Score=86.43 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|+|.|++||||||+++.|++.++ +.+|+.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-------~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-------IPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-------CCEEECcHH
Confidence 689999999999999999999874 679999887
No 34
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.82 E-value=9e-08 Score=86.36 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=72.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 221 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li 221 (446)
+.++++.|+|||||||+++.|+... .+.++|+.|.+... . ..+...+.. .........+.....+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~------~g~~~i~~d~~~~~------~-~~~~~~~~~--~~~~~~~~~~~l~~~~ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL------DNSAYIEGDIINHM------V-VGGYRPPWE--SDELLALTWKNITDLT 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS------SSEEEEEHHHHHTT------C-CTTCCCGGG--CHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc------CCeEEEcccchhhh------h-ccccccCcc--chhHHHHHHHHHHHHH
Confidence 4689999999999999999998764 35689998887421 1 111111110 0000111222233344
Q ss_pred HHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCCCc
Q 013289 222 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPY 301 (446)
Q Consensus 222 ~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~gY 301 (446)
...+..|.++|+|+++. +..++.+...++ .+..+.
T Consensus 67 ~~~~~~~~~~ild~~~~-~~~~~~~~~~~~--------------------------------------------s~g~~~ 101 (189)
T 2bdt_A 67 VNFLLAQNDVVLDYIAF-PDEAEALAQTVQ--------------------------------------------AKVDDV 101 (189)
T ss_dssp HHHHHTTCEEEEESCCC-HHHHHHHHHHHH--------------------------------------------HHCSSE
T ss_pred HHHHhcCCcEEEeeccC-HHHHHHHHHHHH--------------------------------------------hcccCC
Confidence 55567888999998653 333222211100 012234
Q ss_pred EEEEEEEeCCHHHHHHHHHHhhh
Q 013289 302 RIELVGVVCDAYLAVVRGIRRAI 324 (446)
Q Consensus 302 ~I~lv~V~~d~elav~Rv~~R~~ 324 (446)
++.++++.+|++..+.|...|..
T Consensus 102 ~~~~i~L~~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 102 EIRFIILWTNREELLRRDALRKK 124 (189)
T ss_dssp EEEEEEEECCHHHHHHHTTTSCC
T ss_pred CeEEEEEeCCHHHHHHHHHhccc
Confidence 56677889999999999988854
No 35
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.82 E-value=2.8e-08 Score=91.11 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=57.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..+.+|+|.|+|||||||+++.|+..++. .+.-.++++.|.++.. +... .+... +. ..........
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~--~G~~~~~~d~d~~~~~------~~~~-~~~~~----~~-~~~~~~~~~~ 88 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQ--KGKLCYILDGDNVRHG------LNRD-LSFKA----ED-RAENIRRVGE 88 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHTTT------TTTT-CCSSH----HH-HHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEecCchhhhH------hhcc-cCcCh----HH-HHHHHHHHHH
Confidence 56899999999999999999999988742 1111248998887432 2221 11011 11 1111222233
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHH
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQT 246 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~l 246 (446)
+.......|..+|.......+..++.+
T Consensus 89 ~~~~~~~~~~~vi~~~~~~~~~~r~~~ 115 (200)
T 3uie_A 89 VAKLFADAGIICIASLISPYRTDRDAC 115 (200)
T ss_dssp HHHHHHHTTCEEEEECCCCCHHHHHHH
T ss_pred HHHHHHhCCceEEEecCCchHHHHHHH
Confidence 555566789999988877766665543
No 36
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=1.2e-07 Score=86.91 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.+|++.|+|||||||+++.|++.++ +.+++.|.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~-------~~~i~~d~~ 59 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN-------VPFIDLDWY 59 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC-------CCEEcchHH
Confidence 3457899999999999999999999984 678999886
No 37
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.82 E-value=4.5e-08 Score=92.99 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++|.+|+|.|||||||||.|+.|++.+ ++.+|++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~-------g~~hIstGdl 63 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF-------HFNHLSSGDL 63 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH-------CCEEECHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH-------CCceEcHHHH
Confidence 678999999999999999999999998 4789997544
No 38
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.81 E-value=3.5e-08 Score=91.48 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.+|+|.|+|||||||+++.|++.++ ..+|+.|++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~~ 38 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH-------AAHLATGDM 38 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC-------ceEEehhHH
Confidence 4578999999999999999999999874 689998765
No 39
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.81 E-value=1e-07 Score=84.13 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|+|.|++||||||+++.|++.++ +.+||.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-------~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG-------YEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-------CcEEcccHH
Confidence 5799999999999999999999874 689999877
No 40
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.80 E-value=3.4e-08 Score=91.35 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=52.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
.+|.+|++.|++||||||+++.|+..++. ..+...++++.|.++. .+... .. +.... ..........
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-~~g~~~~~~~~d~~r~------~l~~~-~~----~~~~~-r~~~~~~~~~ 89 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVR-DRRVHAYRLDGDNIRF------GLNKD-LG----FSEAD-RNENIRRIAE 89 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEECHHHHTT------TTTTT-CC----SSHHH-HHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc-ccCCcEEEECChHHhh------hhccc-cC----CCHHH-HHHHHHHHHH
Confidence 45789999999999999999999987630 0011378899887743 23221 01 11011 1112222233
Q ss_pred HHHHHHhCCCcEEEeCc
Q 013289 220 LLVTALNEGRDVIMDGT 236 (446)
Q Consensus 220 li~~aL~~G~sVViD~T 236 (446)
.+..++..|..||+|.+
T Consensus 90 ~~~~~l~~g~~VI~d~~ 106 (211)
T 1m7g_A 90 VAKLFADSNSIAITSFI 106 (211)
T ss_dssp HHHHHHHTTCEEEEECC
T ss_pred HHHHHHHCCCEEEEecC
Confidence 56677889999999954
No 41
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.79 E-value=5.8e-08 Score=90.88 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|+|.|+|||||||+++.|++.++ ..+|++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg-------~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS-------LAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CeEEchHHH
Confidence 689999999999999999999873 689998766
No 42
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.76 E-value=4.1e-07 Score=82.41 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+|.+|+|.|+|||||||+++.|++.++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999875
No 43
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.76 E-value=1.6e-07 Score=87.33 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+..|++.|+|||||||+++.|++.++ +.+|+.|++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG-------LAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC-------CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC-------ceEEehhHH
Confidence 46789999999999999999999974 789998776
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.76 E-value=3.2e-08 Score=90.54 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+|.+.|+|||||||+++.|+. + +..+||+|.+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l-------g~~~id~d~~ 35 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L-------GVPLVDADVV 35 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T-------TCCEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C-------CCcccchHHH
Confidence 57899999999999999999987 5 4689999987
No 45
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.72 E-value=2.5e-07 Score=96.40 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=60.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCC---hh-hhHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD---DM-LQTAELVHQSSTD 215 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~---d~-~~~ae~v~~ea~~ 215 (446)
.+|.+|+|.|.|||||||+++.|++.++|. ..+...++.|.++ ..+.+...+. +. .............
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~--~~~t~~~~~d~~r------~~~~g~~~~~~ifd~~g~~~~r~re~~~~ 108 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI--GVPTREFNVGQYR------RDMVKTYKSFEFFLPDNEEGLKIRKQCAL 108 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------HHHHCSCCCGGGGCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc--CCCceEEecchhh------hhhccCCCcccccCCCCHHHHHHHHHHHH
Confidence 568999999999999999999999987652 2345666666653 3333210000 00 0101111111111
Q ss_pred HHHHHHHHHH--hCCCcEEEeCcCCCHHHHHHHHHHH
Q 013289 216 AASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMA 250 (446)
Q Consensus 216 ~a~~li~~aL--~~G~sVViD~T~s~~~~re~lia~A 250 (446)
.+...+...+ ..|..+|+|+|+.....++.++..+
T Consensus 109 ~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~ 145 (469)
T 1bif_A 109 AALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFG 145 (469)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 1112234455 5688999999999988887775543
No 46
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.72 E-value=7.2e-08 Score=86.00 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|.+|+|.|+|||||||+++.|++.++ ..+.++.+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR--KEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH--TTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCcceEEEehHHH
Confidence 67999999999999999999999874 01111688887654
No 47
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.71 E-value=2.1e-07 Score=83.66 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=98.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..+.++.|.|+|||||||+++.+.. +..+++.|.++ ..+... ++... . ..........
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~~~------g~~~~~--~~~~~-~----~~~~~~~~~~ 64 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDFCR------GLMSDD--ENDQT-V----TGAAFDVLHY 64 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHHHH------HHHCSS--TTCGG-G----HHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHHHH------HHhcCc--ccchh-h----HHHHHHHHHH
Confidence 4578999999999999999998642 34567777653 334332 21111 1 1112222333
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.....+..|..+++|.++.....+++.+++|+..
T Consensus 65 ~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral---------------------------------------------- 98 (171)
T 4gp7_A 65 IVSKRLQLGKLTVVDATNVQESARKPLIEMAKDY---------------------------------------------- 98 (171)
T ss_dssp HHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHT----------------------------------------------
T ss_pred HHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHc----------------------------------------------
Confidence 5566778899999999998887777777776542
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHHHHHHHhHHHhhcccceEEEeecC
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSHKRFANAFRNYCELVDNARLYCTN 362 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~~rf~~~~~~~~~lvD~~~lydnn 362 (446)
.....++.++.|....-.|...|.. +.+|.+.+.+....+.+.+....+- ....++-+.
T Consensus 99 ~~~p~~lllDEPt~~Ld~~~~~R~~---~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH 157 (171)
T 4gp7_A 99 HCFPVAVVFNLPEKVCQERNKNRTD---RQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILN 157 (171)
T ss_dssp TCEEEEEEECCCHHHHHHHHHTCSS---CCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEEC
T ss_pred CCcEEEEEEeCCHHHHHHHHhcccC---CCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeC
Confidence 2345678888888888788887763 6889888877777777665544332 334444443
No 48
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.71 E-value=4.8e-07 Score=81.28 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l 166 (446)
+|++.|++||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 49
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.70 E-value=5.1e-08 Score=87.46 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+|+|+|+|||||||+++.|++.++ +.+||.|.+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg-------~~~id~D~~ 36 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALG-------VGLLDTDVA 36 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC-------CCEEeCchH
Confidence 34689999999999999999999874 679999987
No 50
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.68 E-value=3.6e-07 Score=81.37 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChh---hhHHHHHHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDM---LQTAELVHQSSTDAASS 219 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~---~~~ae~v~~ea~~~a~~ 219 (446)
.+|+|.|+|||||||+++.|++.++ ..+..+.+++.|++ +...+...+..... ..............+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD--NQGINNKIINYGDF-----MLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAK 74 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH--TTTCCEEEEEHHHH-----HHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEEECChH-----HHHHHHhcccccchhhhhcCCHHHHHHHHHHHHH
Confidence 4799999999999999999999874 11123778876654 12222111111100 00000001122222333
Q ss_pred HHHHHH--hCCCcEEEeCc
Q 013289 220 LLVTAL--NEGRDVIMDGT 236 (446)
Q Consensus 220 li~~aL--~~G~sVViD~T 236 (446)
.+..++ ..|..||+|+.
T Consensus 75 ~i~~~l~~~~~~~vi~d~~ 93 (194)
T 1nks_A 75 GIAEEARAGGEGYLFIDTH 93 (194)
T ss_dssp HHHHHHHHTCSSEEEEEEC
T ss_pred HHHHHhhccCCCEEEECCc
Confidence 456667 78999999986
No 51
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.66 E-value=2.9e-07 Score=85.43 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|.+|+|.|+|||||||+++.|++.++ ..+++.|++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-------~~~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ-------LAHISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC-------CEECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-------CceecHHHH
Confidence 467899999999999999999999974 689998765
No 52
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.66 E-value=3e-07 Score=86.27 Aligned_cols=82 Identities=23% Similarity=0.279 Sum_probs=49.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHH-H--HHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQ-S--STDAASSL 220 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~-e--a~~~a~~l 220 (446)
+|+|-|||||||||.|+.|++.+ ++++|++.++ +|.++... ..-.......... . .-.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-------g~~~istGdl-----lR~~i~~~--t~lg~~~~~~~~~G~lvpd~iv~~l 67 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-------GFVHISTGDI-----LREAVQKG--TPLGKKAKEYMERGELVPDDLIIAL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-------CCEEEEHHHH-----HHHHHHHT--CHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-------CCeEEcHHHH-----HHHHHHhc--ChhhhhHHHHHhcCCcCCHHHHHHH
Confidence 57888999999999999999998 4789996544 23334331 0000001111000 0 01344556
Q ss_pred HHHHHhCCCcEEEeCcCCC
Q 013289 221 LVTALNEGRDVIMDGTLSW 239 (446)
Q Consensus 221 i~~aL~~G~sVViD~T~s~ 239 (446)
+...+.+...+|+||--.+
T Consensus 68 v~~~l~~~~~~ilDGfPRt 86 (206)
T 3sr0_A 68 IEEVFPKHGNVIFDGFPRT 86 (206)
T ss_dssp HHHHCCSSSCEEEESCCCS
T ss_pred HHHhhccCCceEecCCchh
Confidence 7777777778888885444
No 53
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.66 E-value=2.8e-07 Score=85.89 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.+|+|.|+|||||||+++.|++.+ +..+|+.|++
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l-------~~~~i~~d~~ 41 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF-------ELKHLSSGDL 41 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS-------SSEEEEHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc-------CCeEEechHH
Confidence 347899999999999999999999987 4789998765
No 54
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.63 E-value=1.2e-06 Score=83.36 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=35.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhccc---CCCCCeEEEeCcccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAFK 184 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~---~~~~~~vvIdaD~ir 184 (446)
..+|.+|.|+|++||||||+++.|++.+++. ..+.++.+|+.|.+-
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3568999999999999999999999987531 011245689999984
No 55
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.62 E-value=3.9e-07 Score=85.57 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=32.3
Q ss_pred cccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 132 MVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 132 ~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|.|.... ..|..|++.|+|||||||+++.|++.++ +.+|+.|++
T Consensus 7 ~~p~~~~-~~~~~I~l~G~~GsGKsT~a~~La~~l~-------~~~i~~d~l 50 (233)
T 1ak2_A 7 AEPVPES-PKGVRAVLLGPPGAGKGTQAPKLAKNFC-------VCHLATGDM 50 (233)
T ss_dssp --------CCCCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCCCCCC-CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CceecHHHH
Confidence 4455444 4567899999999999999999999974 789998765
No 56
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.61 E-value=1e-07 Score=86.92 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
++|.+|+|.|++||||||+++.|++.++
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999875
No 57
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.61 E-value=2.8e-07 Score=83.98 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
++|.+|+|.|++||||||+++.|++.++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999999865
No 58
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.60 E-value=3.6e-07 Score=81.78 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+++.+|++.|++||||||+++.|+..+.- .+-..+.+|.|.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~--~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC--HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh--CCCcEEEECChHHH
Confidence 35789999999999999999999987510 01135566777664
No 59
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.59 E-value=9.9e-07 Score=83.56 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.++.+|++.|++||||||+++.|++.+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999874
No 60
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.59 E-value=8.9e-08 Score=88.89 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
....+|.++|++||||||+++.|++.+ ++.+||+|.+.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l-------g~~vid~D~~~ 47 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY-------GAHVVNVDRIG 47 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH-------CCEEEEHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc-------CCEEEECcHHH
Confidence 456899999999999999999999986 48999999883
No 61
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.58 E-value=4.1e-07 Score=98.77 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=73.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh---cccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES---FWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA 216 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l---~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~ 216 (446)
.+|.+|+|+|+|||||||+++.|++.+ ++ .++.+|.|.++. .+... ...+. +. ..+..+.
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~-----~~v~lDgD~iR~------~L~~~-~~fs~----~d-ree~~r~ 112 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI-----PCYTLDGDNIRQ------GLNKN-LGFSP----ED-REENVRR 112 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-----CEEEESHHHHTT------TTTTT-CCSSH----HH-HHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-----eEEEechHHhhh------ccCcc-ccCCh----hh-hHHHHHH
Confidence 368999999999999999999999987 42 467777777643 23321 01011 00 1222222
Q ss_pred HHHHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhh
Q 013289 217 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVF 296 (446)
Q Consensus 217 a~~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~ 296 (446)
...++..++..|..||.+.+......++.+.++ .
T Consensus 113 i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~l----------------------------------------------l 146 (630)
T 1x6v_B 113 IAEVAKLFADAGLVCITSFISPYTQDRNNARQI----------------------------------------------H 146 (630)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHH----------------------------------------------H
T ss_pred HHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHH----------------------------------------------H
Confidence 334566677889888887543333233322211 1
Q ss_pred cCCCcEEEEEEEeCCHHHHHHHHHH
Q 013289 297 SRKPYRIELVGVVCDAYLAVVRGIR 321 (446)
Q Consensus 297 ~~~gY~I~lv~V~~d~elav~Rv~~ 321 (446)
...+..+.+|+++||++++.+|..+
T Consensus 147 ~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 147 EGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp HTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred HhCCCCeEEEEEECCHHHHHHHhcc
Confidence 2233446789999999999999763
No 62
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.58 E-value=5.3e-07 Score=83.29 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|+|.|+|||||||+++.|++.++ ..+|+.|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g-------~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG-------IPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC-------CCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CeEEeHHHH
Confidence 479999999999999999999874 678998765
No 63
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.57 E-value=2.1e-07 Score=84.31 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=33.9
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHh-hcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKE-SFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~-l~~~~~~~~~vvIdaD~i 183 (446)
+....+++..|+++|+|||||||+++.|++. + ++.+||+|.+
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~-------g~~~id~d~~ 45 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELD-------GFQHLEVGKL 45 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHST-------TEEEEEHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcC-------CCEEeeHHHH
Confidence 3334456789999999999999999999998 5 4789999976
No 64
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.56 E-value=2.7e-07 Score=81.55 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++.+|+|.|+|||||||+++.|+..++ ..++|.|.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-------~~~id~d~~ 38 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-------MEFYDSDQE 38 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT-------CEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-------CCEEeccHH
Confidence 467899999999999999999999873 689998876
No 65
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.56 E-value=7e-07 Score=82.40 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|.+|+|+|++||||||+++.|++ + ++.+||+|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l-------g~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L-------GINVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T-------TCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c-------CCEEEEccHH
Confidence 478999999999999999999987 5 4789999876
No 66
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.53 E-value=4.4e-07 Score=81.14 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+++.+|++.|+|||||||+++.|++.+ ++.+++.|.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~-------~~~~~~~d~~ 45 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS-------GLKYINVGDL 45 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH-------CCEEEEHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh-------CCeEEEHHHH
Confidence 346788999999999999999999987 4789998876
No 67
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.53 E-value=7.4e-07 Score=95.74 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=58.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
.+|.+|+|+|+|||||||+++.|++.+++.+ +..+.++|.|.+ ++.+.+. ..... .+ ..+..+....
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G-~~~~~~lD~D~i------r~~l~~~-~~f~~---~e--r~~~i~ri~~ 460 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQG-GRSVSLLLGDTV------RHELSSE-LGFTR---ED--RHTNIQRIAF 460 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHC-SSCEEEEEHHHH------HHHTCTT-CCCSH---HH--HHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccC-CceEEEECcHHH------HHHhccc-cCCCh---hH--HHHHHHHHHH
Confidence 4689999999999999999999999875210 023688988876 3445432 11011 11 1112222334
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHH
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQ 245 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~ 245 (446)
++...+..|..||.+.....+..++.
T Consensus 461 v~~~~~~~g~~VI~~~is~~~~~R~~ 486 (573)
T 1m8p_A 461 VATELTRAGAAVIAAPIAPYEESRKF 486 (573)
T ss_dssp HHHHHHHTTCEEEEECCCCCHHHHHH
T ss_pred HHHHHHhCCCEEEEEcCCCcHHHHHH
Confidence 66677889999999865555544443
No 68
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.52 E-value=5.5e-06 Score=77.96 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=49.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccc---hHHHHHHhcCCCC-ChhhhHHHHHHHHH-H
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET---DVIYRALSSKGHH-DDMLQTAELVHQSS-T 214 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~---d~irk~L~~~g~~-~d~~~~ae~v~~ea-~ 214 (446)
+++.+|++.|++||||||+++.|++.+. ..+-.++... +-... ..+++.+...... -++ ++.....-.. .
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~~~~--~p~~~~~g~~i~~~l~~~~~~~~~~-~~~~llf~a~R~ 78 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQLTR--EPGGTPLAERIRELLLAPSDEPMAA-DTELLLMFAARA 78 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEE--SSCSSHHHHHHHHHHHSCCSSCCCH-HHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCccccc--CCCCCHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHH
Confidence 4589999999999999999999998764 1112222222 11111 1233334432100 011 1111111111 2
Q ss_pred HHHHHHHHHHHhCCCcEEEeC
Q 013289 215 DAASSLLVTALNEGRDVIMDG 235 (446)
Q Consensus 215 ~~a~~li~~aL~~G~sVViD~ 235 (446)
......+..+++.|..||.|-
T Consensus 79 ~~~~~~i~p~l~~g~~Vi~DR 99 (213)
T 4edh_A 79 QHLAGVIRPALARGAVVLCDR 99 (213)
T ss_dssp HHHHHTHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHCCCEEEECc
Confidence 223456788999999999994
No 69
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.51 E-value=1.3e-06 Score=80.01 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+++.+|.|+|+|||||||+++.|+..+ .++.+|+.|.+-
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~------~~~~~i~~D~~~ 57 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL------PNCSVISQDDFF 57 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS------TTEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc------CCcEEEeCCccc
Confidence 457899999999999999999999875 258899999873
No 70
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.48 E-value=1.6e-06 Score=77.70 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+.++++.|+|||||||+++.|+..++ .+.++++.|++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccch
Confidence 4578999999999999999999988642 46789998876
No 71
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.48 E-value=7e-06 Score=78.75 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=49.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCC-eEEEe-CcccccchHHHHHHhcCCCCChhhhHHHH--HHHHHH
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAEL--VHQSST 214 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~-~vvId-aD~ir~~d~irk~L~~~g~~~d~~~~ae~--v~~ea~ 214 (446)
.+++.+|++.|++||||||+++.|++.+.. .+-. ..... ++.-.-...++..+.............+. ....-.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~--~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~ 101 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQ--NGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARV 101 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHH
Confidence 356899999999999999999999887641 1112 22222 21100011233334211000011111111 111112
Q ss_pred HHHHHHHHHHHhCCCcEEEe
Q 013289 215 DAASSLLVTALNEGRDVIMD 234 (446)
Q Consensus 215 ~~a~~li~~aL~~G~sVViD 234 (446)
......+..+++.|..||.|
T Consensus 102 ~~~~~~I~paL~~g~~VI~D 121 (236)
T 3lv8_A 102 QLVENVIKPALARGEWVVGD 121 (236)
T ss_dssp HHHHHTHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 33445788899999999999
No 72
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.47 E-value=1.7e-06 Score=83.08 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++|.+|.|.||+||||||+++.|++.++ +.+++.|.+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg-------~~~~d~g~~ 43 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALG-------ARYLDTGAM 43 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCCcH
Confidence 4588999999999999999999999874 789998877
No 73
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.44 E-value=1.2e-06 Score=77.42 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-..|+|.|++||||||+++.|++.++ +.+||+|.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg-------~~~id~D~~ 41 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK-------LEVLDTDMI 41 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT-------CCEEEHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC-------CCEEEChHH
Confidence 46889999999999999999999884 679999887
No 74
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.44 E-value=8.9e-07 Score=94.55 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=58.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
+.|.+|+++|++||||||+++.|++.++. .+..+.++|.|.++ +.+.+. ..... .+. .........
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~--~G~~~~~ld~D~ir------~~l~~~-~~f~~---~er--~~~l~~i~~ 435 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQA--RGRKVTLLDGDVVR------THLSRG-LGFSK---EDR--ITNILRVGF 435 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECHHHHH------HHTCTT-CCSSH---HHH--HHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhh--cCCeEEEECchHhh------hhhccc-ccccH---HHH--HHHHHHHHH
Confidence 45789999999999999999999998752 12346899988773 444432 11011 111 111122233
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHH
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVE 244 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re 244 (446)
++...++.|..||+|++...+..++
T Consensus 436 ~~~~~l~~G~~VI~d~~~~~~~~r~ 460 (546)
T 2gks_A 436 VASEIVKHNGVVICALVSPYRSARN 460 (546)
T ss_dssp HHHHHHHTTCEEEEECCCCCHHHHH
T ss_pred HHHHHHhCCCEEEEEcCCCCHHHHH
Confidence 5666788999999998877654443
No 75
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.43 E-value=6.9e-07 Score=80.62 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.+|.|+|++||||||+++.|++. | +.+||.|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g-------~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-G-------YPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-T-------CCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-C-------CEEEcccHH
Confidence 56899999999999999999999986 4 689999987
No 76
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.41 E-value=2.1e-06 Score=76.44 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|+|.|+|||||||+++.|++.++ +.++|.|.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-------~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-------LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-------CCEEcccHH
Confidence 588899999999999999999974 789999887
No 77
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.41 E-value=2.8e-05 Score=73.28 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
++.+|++.|++||||||.++.|.+.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999988763
No 78
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.39 E-value=2.8e-06 Score=78.21 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+|.|.|+|||||||+++.|++.++ +.++++|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g-------~~~~d~g~i 39 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ-------WHLLDSGAI 39 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-------CCcccCcce
Confidence 56899999999999999999999874 789998887
No 79
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.37 E-value=9.5e-06 Score=72.88 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999874
No 80
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.37 E-value=3.4e-06 Score=80.98 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-.-+.+.|+|||||||+++.|++.+ ++.+|+++++
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~-------g~~~is~gdl 42 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF-------GIPQISTGDM 42 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH-------TCCEECHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh-------CCCeeechHH
Confidence 4567899999999999999999997 4789998655
No 81
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.36 E-value=4.7e-06 Score=76.59 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|.+|+++|++||||||+++.|++.+ ++.++|.|.+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~-------g~~~~~~d~~ 37 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASEL-------SMIYVDTGAM 37 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHT-------TCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc-------CCceecCChH
Confidence 36789999999999999999999987 4789999887
No 82
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.33 E-value=5.5e-05 Score=70.64 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=49.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEE-eCcccccchHHHHHHhcCCCCChhhhHHHHHHHHH-HHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAAS 218 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvI-daD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea-~~~a~ 218 (446)
|+.+|++-|+.||||||.++.|++.+. .+..+++. .++.-.-...+++.+... ..-++. +........ .....
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~---~~~~v~~~~eP~~t~~g~~ir~~l~~~-~~~~~~-~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLV---KDYDVIMTREPGGVPTGEEIRKIVLEG-NDMDIR-TEAMLFAASRREHLV 75 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHT---TTSCEEEEESSTTCHHHHHHHHHHHSS-CCCCHH-HHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH---CCCCEEEeeCCCCChHHHHHHHHHhcc-cCCCHH-HHHHHHHHHHHHHHH
Confidence 457899999999999999999998862 12233332 232211122344444332 111111 111111111 12234
Q ss_pred HHHHHHHhCCCcEEEeC
Q 013289 219 SLLVTALNEGRDVIMDG 235 (446)
Q Consensus 219 ~li~~aL~~G~sVViD~ 235 (446)
..+..++++|..||.|-
T Consensus 76 ~~i~p~l~~g~~Vi~DR 92 (205)
T 4hlc_A 76 LKVIPALKEGKVVLCDR 92 (205)
T ss_dssp HTHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCEEEecC
Confidence 56788999999999994
No 83
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.32 E-value=2.1e-06 Score=78.10 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|+|+|+|||||||+++.|++ + ++.+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~-------g~~~i~~d~~ 34 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L-------GAYVLDADKL 34 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T-------TCEEEEHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C-------CCEEEEccHH
Confidence 3689999999999999999998 6 4789999876
No 84
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.30 E-value=3.6e-06 Score=77.31 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.++.|+|++||||||+++.|+..+. ..+..+.+++.|.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMDDHIV 63 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccCcccC
Confidence 4579999999999999999999988642 1123466778888743
No 85
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.28 E-value=1.1e-07 Score=86.42 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
|.++++.|||||||||+++.|+..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999998764
No 86
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.25 E-value=1.1e-05 Score=75.68 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..+.+|.|.|+|||||||+++.|++.+| +.++|+|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg-------~~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG-------FTYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC-------CEEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC-------CceecCCCee
Confidence 4577999999999999999999999874 7899999873
No 87
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.24 E-value=4.3e-07 Score=84.09 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.+.++++.|||||||||+++.|+..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 457899999999999999999999875
No 88
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.23 E-value=8.1e-06 Score=77.86 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+++.+|++.|++||||||+++.|++.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998873
No 89
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.22 E-value=2.2e-05 Score=72.21 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+.++.|.|||||||||+++.|+..+.-. +....+|..|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEecCCC
Confidence 567899999999999999999998876310 123566666654
No 90
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.22 E-value=1.1e-05 Score=76.97 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.+|.|.|||||||||+++.|++.+| ..++|.|.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg-------~~~~d~g~i 61 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN-------WRLLDSGAI 61 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT-------CEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-------CCcCCCCce
Confidence 457999999999999999999999984 688888876
No 91
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.18 E-value=1e-05 Score=81.77 Aligned_cols=142 Identities=19% Similarity=0.211 Sum_probs=78.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhc------------CCCC--C--hhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS------------KGHH--D--DML 203 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~------------~g~~--~--d~~ 203 (446)
.+|.+|+|.||+||||||++..|++++ +..+||+|.+. +|++|.- ..|. + ++.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-------~~eiIs~Ds~q----vYr~mdIgTakp~~eE~~gvphhlidi~~~~ 106 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF-------PLEVINSDKMQ----VYKGLDITTNKISVPDRGGVPHHLLGEVDPA 106 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS-------CEEEEECCSST----TBSSCTTTTTCCCSGGGTTCCEESSSCBCGG
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC-------CCcEEcccccc----cccceeeecCCCCHHHHcCCCEeeccccCcc
Confidence 356799999999999999999999997 47899999872 1222211 0000 0 110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhc
Q 013289 204 QTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEG 283 (446)
Q Consensus 204 ~~ae~v~~ea~~~a~~li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~ 283 (446)
...+........+...+......|+.+|+-|.-. -|.+.++. |+.. .. .+ ++..+
T Consensus 107 -~e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtg--lYi~all~--------------g~~~-p~-~~-----d~~~a- 161 (339)
T 3a8t_A 107 -RGELTPADFRSLAGKAVSEITGRRKLPVLVGGSN--SFIHALLV--------------DRFD-SS-GP-----GVFEE- 161 (339)
T ss_dssp -GCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHHHHHB--------------SSCC-TT-CC-----------
T ss_pred -cCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHH--HHHHHHHh--------------CCCC-Cc-cc-----Chhhh-
Confidence 0011112234455567777888899888764321 13332210 1100 00 00 00000
Q ss_pred chhhHhhhhhhhhcCCCcEEEEEEEeCCHHHHHHHHHHhh
Q 013289 284 EEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRRA 323 (446)
Q Consensus 284 ~~~~~~~~~~~~~~~~gY~I~lv~V~~d~elav~Rv~~R~ 323 (446)
..+.......+|.+.++++.++.++..+|+..|+
T Consensus 162 ------~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~ 195 (339)
T 3a8t_A 162 ------GSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRV 195 (339)
T ss_dssp --------------CBSSEEEEEEEECCHHHHHHHHHHHH
T ss_pred ------cccCccccccccCeEEEEEeCCHHHHHHHHHhhc
Confidence 0000001124578888999999999999999986
No 92
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.17 E-value=1.1e-06 Score=81.49 Aligned_cols=82 Identities=21% Similarity=0.347 Sum_probs=49.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc--c--------------cCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAE 207 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~--~--------------~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae 207 (446)
.|+|+||+||||||+++.|.+.+. + +..+.++.+|+.++|. .+...+ .+...++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~-------~~i~~g---~flE~~~ 72 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK-------SMIKNN---EFIEWAQ 72 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH-------HHHHTT---CEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHH-------HHHHcC---CEEEEEE
Confidence 478999999999999999987642 1 1223456666666652 222211 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEeCc
Q 013289 208 LVHQSSTDAASSLLVTALNEGRDVIMDGT 236 (446)
Q Consensus 208 ~v~~ea~~~a~~li~~aL~~G~sVViD~T 236 (446)
. |...+......+...+++|+++|+|..
T Consensus 73 ~-~g~~YGt~~~~v~~~l~~g~~vil~id 100 (186)
T 1ex7_A 73 F-SGNYYGSTVASVKQVSKSGKTCILDID 100 (186)
T ss_dssp E-TTEEEEEEHHHHHHHHHHTSEEEEECC
T ss_pred E-cCceeeeecceeeehhhCCCEEEecCC
Confidence 1 222222233467778899999999964
No 93
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.14 E-value=6.2e-05 Score=71.63 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=50.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEE-E-eCcccccchHHHHHHhcCCCCChhhhHHHHHHHH-HHH
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-V-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQS-STD 215 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vv-I-daD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~e-a~~ 215 (446)
..+|.+|++.|++||||||+++.|++.+... .+..+.+ . .++.-.-...+++-+...... ++ ++.-+..-. -..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~-~g~~v~~~treP~~t~~g~~ir~~l~~~~~~-~~-~~e~llf~a~R~~ 94 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEI-YGVNNVVLTREPGGTLLNESVRNLLFKAQGL-DS-LSELLFFIAMRRE 94 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCGGGEEEEESSCSSHHHHHHHHHHHTCSSC-CH-HHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-cCceeeEeeeCCCCChHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHHH
Confidence 3678999999999999999999999876410 1112333 2 333210011233334321101 11 111111111 123
Q ss_pred HHHHHHHHHHhCCCcEEEeC
Q 013289 216 AASSLLVTALNEGRDVIMDG 235 (446)
Q Consensus 216 ~a~~li~~aL~~G~sVViD~ 235 (446)
.....+..+++.|..||.|-
T Consensus 95 ~~~~~I~paL~~g~~VI~DR 114 (223)
T 3ld9_A 95 HFVKIIKPSLMQKKIVICDR 114 (223)
T ss_dssp HHHHTHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHhcCCeEEEcc
Confidence 33445778999999999994
No 94
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.12 E-value=1.3e-05 Score=74.50 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+|.|.|++||||||+++.|++++| +.++|.|.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg-------~~~~D~~~~ 40 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN-------IPLYSKELL 40 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT-------CCEECHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC-------cCEECHHHH
Confidence 46899999999999999999999985 678885443
No 95
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.10 E-value=2.1e-05 Score=78.82 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=35.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
...|.++.|+||+||||||+++.|...+.-...++.+.+|+.|.+-
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 3679999999999999999999998765310112457889999874
No 96
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.09 E-value=2e-05 Score=74.84 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
.+.+|.|+|++||||||+++.|++.++ +.++|.|.++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg-------~~~~d~~~~~ 49 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG-------IHFYDDDILK 49 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT-------CEEECHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC-------CcEEcHHHHH
Confidence 367999999999999999999999984 7899988764
No 97
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.06 E-value=2e-05 Score=76.00 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+..|++.|+|||||||+++.|+..++ ..++|.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg-------~~~~d~d~~ 82 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG-------YTFFDCDTL 82 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT-------CEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC-------CcEEeCcHH
Confidence 56899999999999999999999884 689998876
No 98
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.04 E-value=8.4e-05 Score=67.05 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+.++.+.|||||||||+++.|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46799999999999999999998864
No 99
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.02 E-value=3.1e-06 Score=77.08 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.+|+|.|++||||||+++.|++.+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998874
No 100
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.97 E-value=0.00042 Score=64.08 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe-CcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 221 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId-aD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~li 221 (446)
.+|++-|+-||||||.++.|++.+. ..+..+++.. |+.-.-...+++.+.... . ++. +.-+............+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~--~~g~~v~~treP~~t~~~~~ir~~l~~~~-~-~~~-~~~ll~~a~r~~~~~~I 75 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLE--KRGKKVILKREPGGTETGEKIRKILLEEE-V-TPK-AELFLFLASRNLLVTEI 75 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCSSHHHHHHHHHHHHSC-C-CHH-HHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCCCcHHHHHHHHhhccc-C-ChH-HHHHHHHHHHHHHHHHH
Confidence 3788999999999999999988762 2222333332 221111223344443321 1 111 11111111122233467
Q ss_pred HHHHhCCCcEEEeC
Q 013289 222 VTALNEGRDVIMDG 235 (446)
Q Consensus 222 ~~aL~~G~sVViD~ 235 (446)
..+++.|..||.|-
T Consensus 76 ~~~L~~g~~Vi~DR 89 (197)
T 3hjn_A 76 KQYLSEGYAVLLDR 89 (197)
T ss_dssp HHHHTTTCEEEEES
T ss_pred HHHHHCCCeEEecc
Confidence 88999999999994
No 101
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.96 E-value=2.5e-05 Score=70.54 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+|.+|++.|++||||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999986
No 102
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.93 E-value=1.4e-05 Score=80.25 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.+|+|+||+||||||++..|++.+ +..+||.|.+
T Consensus 3 ~m~~~i~i~GptGsGKTtla~~La~~l-------~~~iis~Ds~ 39 (323)
T 3crm_A 3 SLPPAIFLMGPTAAGKTDLAMALADAL-------PCELISVDSA 39 (323)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEEECTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc-------CCcEEeccch
Confidence 357899999999999999999999997 4789999987
No 103
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.88 E-value=1.6e-05 Score=79.82 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=53.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhc------------CCCC----Chhhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS------------KGHH----DDMLQ 204 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~------------~g~~----~d~~~ 204 (446)
+|.+|+|+||+||||||++..|++.+ +..+||+|.+- +|+.++- ..|. .++..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~Q----vYr~~~igTakp~~~E~~gvphhlid~~~~~e 70 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL-------NGEVISGDSMQ----VYRGMDIGTAKITAEEMDGVPHHLIDIKDPSE 70 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT-------TEEEEECCGGG----GBTTCCTTTTCCCHHHHTTCCEESSSCBCTTS
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC-------ccceeecCccc----ceeeeeecCCCCCHHHHcCCCEEEeccCChhh
Confidence 46799999999999999999999987 47899999862 2232221 1000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEEe-Cc
Q 013289 205 TAELVHQSSTDAASSLLVTALNEGRDVIMD-GT 236 (446)
Q Consensus 205 ~ae~v~~ea~~~a~~li~~aL~~G~sVViD-~T 236 (446)
.+........+...+....+.|+.+|+= ||
T Consensus 71 --~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGT 101 (322)
T 3exa_A 71 --SFSVADFQDLATPLITEIHERGRLPFLVGGT 101 (322)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred --hccHHHHHHHHHHHHHHHHhCCCcEEEEcCc
Confidence 0101223455667888899999976664 55
No 104
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.82 E-value=3.5e-05 Score=77.25 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+|.+|+|+||+||||||++..|++.+ +..+|++|.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~ 44 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL-------PVELISVDSA 44 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEECCTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC-------CCcEEecccc
Confidence 568899999999999999999999996 4789999976
No 105
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.78 E-value=9.3e-06 Score=73.42 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+|.|+|++||||||+++.|++.++ +.++|.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-------~~~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-------VPYLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-------CCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-------CceeccchHH
Confidence 899999999999999999999874 7899999873
No 106
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.75 E-value=0.00013 Score=78.17 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCC-CeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT-NAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~-~~vvIdaD~i 183 (446)
.++.+++|.|+|||||||+++.|+..+.- .++ .+.++|.|.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcHH
Confidence 45789999999999999999999988641 111 2557998877
No 107
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.75 E-value=5.2e-05 Score=71.50 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+.+.+++|.|||||||||+.+.|....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4567899999999999999999998864
No 108
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.71 E-value=2.8e-05 Score=78.65 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++.+|+|+||+||||||++..|++.+ +..+|+.|.+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l-------~~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKF-------NGEIISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT-------TEEEEECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHc-------CCceeccccc
Confidence 46799999999999999999999997 4789999987
No 109
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.67 E-value=1.5e-05 Score=78.21 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
++.+|.|+|++||||||+++.|++.++. .+..+.+|++|.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--EGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH--HTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh--cCCCeeEeecchhhc
Confidence 4678999999999999999999987631 012378999999853
No 110
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.64 E-value=4e-05 Score=69.89 Aligned_cols=39 Identities=18% Similarity=0.421 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.++.|.|+|||||||+++.|+..++ +.+.+|+.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~-----~~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG-----ERVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG-----GGEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecCcc
Confidence 4678999999999999999999998763 13778888875
No 111
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.64 E-value=0.00048 Score=64.37 Aligned_cols=26 Identities=35% Similarity=0.622 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.+.+|.+.|++||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999999765
No 112
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.63 E-value=8e-06 Score=76.49 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..+.+++|.||+||||||+++.|++.+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 457899999999999999999999875
No 113
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.54 E-value=8.6e-05 Score=76.80 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=52.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhc------------CCCC--C--hhhhH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS------------KGHH--D--DMLQT 205 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~------------~g~~--~--d~~~~ 205 (446)
+.+|+|+||+||||||++..|++.++ ..+|++|..- +|+.+.- ..|. + ++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-------~~iis~Ds~Q----vYr~l~i~T~kp~~~E~~gv~hhlid~~~~~-- 68 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-------GEVINSDSMQ----VYKDIPIITNKHPLQEREGIPHHVMNHVDWS-- 68 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-------EEEEECCTTT----TBSSCTTTTTCCCGGGTTTCCEESCSCBCTT--
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-------CeEeecCccc----eecccccccCCCCHHHHcCchhhcCCccChH--
Confidence 56899999999999999999999973 6799999741 1333321 0010 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEe-CcC
Q 013289 206 AELVHQSSTDAASSLLVTALNEGRDVIMD-GTL 237 (446)
Q Consensus 206 ae~v~~ea~~~a~~li~~aL~~G~sVViD-~T~ 237 (446)
..+........+...+......|+.+|+= ||.
T Consensus 69 ~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTg 101 (409)
T 3eph_A 69 EEYYSHRFETECMNAIEDIHRRGKIPIVVGGTH 101 (409)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCCEEEECChH
Confidence 01111223455667888899999976554 553
No 114
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.43 E-value=4.6e-05 Score=71.80 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|.+++|.|+|||||||+++.|++.++ ...++.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg-------~~~~~~G~i 61 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG-------LQHLSSGHF 61 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC-------CCCEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC-------CeEecHHHH
Confidence 478999999999999999999999874 456666554
No 115
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.38 E-value=0.00025 Score=69.62 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEE-eCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvI-daD~ir 184 (446)
..|.+|.|+|++||||||+++.|...+.-.++....+.+ ..|.|-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 568999999999999999999998876410000123444 988874
No 116
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.34 E-value=0.00012 Score=69.13 Aligned_cols=51 Identities=27% Similarity=0.358 Sum_probs=32.2
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhccc---CCCCCeEEEeCccc
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAF 183 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~---~~~~~~vvIdaD~i 183 (446)
..+...-..+.++.|.|||||||||+++.|+..+|.. .......+++.|.+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 3344444678999999999999999999998876410 00113447777755
No 117
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.32 E-value=0.00012 Score=66.01 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.+.++++.|+|||||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 347899999999999999999998875
No 118
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.30 E-value=0.00042 Score=68.71 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 109 VFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 109 ~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+...+.+++..+-... . |+......|.+++|.|+|||||||++..|+..+. ..+....+++.|.++.
T Consensus 79 ~~~~~~~~l~~~l~~~----~----~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~ 145 (306)
T 1vma_A 79 ALESLKEIILEILNFD----T----KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA 145 (306)
T ss_dssp HHHHHHHHHHHHTCSC----C----CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH
T ss_pred HHHHHHHHHHHHhCCC----C----CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH
Confidence 5555666665554210 1 2322336689999999999999999999987652 2234678889998863
No 119
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.20 E-value=0.0003 Score=69.15 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..+.++.|.|+|||||||+++.|+..+.-....+.+.+|+.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 567899999999999999999998864200112347788888774
No 120
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.00024 Score=63.89 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
++.++++.|||||||||+++.|...+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35799999999999999999998864
No 121
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.12 E-value=0.0017 Score=64.62 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=37.0
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.....|.++.|.|++||||||++..|+..+. ..+....+++.|.++.
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRA 146 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcch
Confidence 3346789999999999999999999887642 2345688899998753
No 122
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.11 E-value=0.0012 Score=65.25 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=35.0
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
|+...-..|.++.+.|+|||||||+++.|+..+. ..++...+.+.|.++
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFR 140 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSC
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccc
Confidence 3333346789999999999999999999987642 122345556677765
No 123
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.07 E-value=0.00023 Score=67.67 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=24.8
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
|..+..++|.+|+|.|++||||||+++.|++.+
T Consensus 16 ~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 16 SASSEGTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -------CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cccccccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 444555678999999999999999999999986
No 124
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.06 E-value=0.0027 Score=59.88 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
++.+|++.|++||||||+++.|++.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999999984
No 125
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.03 E-value=0.0047 Score=65.42 Aligned_cols=44 Identities=23% Similarity=0.481 Sum_probs=32.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
-..|.++.|.|+|||||||+++.|+..+. ..++.+.+.+.|.++
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFR 333 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccc
Confidence 36789999999999999999999987642 112334444688775
No 126
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.03 E-value=0.0015 Score=66.36 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 107 KRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 107 ~r~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..+...+.+++..+-.... . -.|+......|.++.|.|+|||||||+++.|+..+. ..++...+.+.|.++
T Consensus 127 ~~~~~~l~~~l~~~l~~~~----~-~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKN----S-KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFR 197 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC--------CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSC
T ss_pred HHHHHHHHHHHHHHhCCcc----c-CCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccc
Confidence 3455555666655542110 0 023433346789999999999999999999987652 123345566677765
No 127
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.00 E-value=0.0018 Score=67.31 Aligned_cols=44 Identities=20% Similarity=0.355 Sum_probs=35.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.+++++|++||||||++..|+..+ ...+..+.++++|.++.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCccch
Confidence 358999999999999999999988654 23345678899998864
No 128
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.99 E-value=0.0018 Score=67.62 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.|.+|+++|++||||||++..|+..+ ...+..+.+|++|.++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l--~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF--QKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCcch
Confidence 58999999999999999999998764 23445788999999875
No 129
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.91 E-value=0.00064 Score=72.15 Aligned_cols=43 Identities=7% Similarity=0.202 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+.+.+|++.|.|||||||+++.|++++++...+-.+.++|.|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4578999999999999999999999986311112357888886
No 130
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.90 E-value=0.00097 Score=66.13 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+.++.|.|+|||||||+++.|...+.-......+.+|.-|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 66899999999999999999999876521001124667777755
No 131
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.87 E-value=0.0003 Score=65.40 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=18.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH-Hhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIM-KES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La-~~l 166 (446)
+.+.++.+.|||||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999998 654
No 132
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.85 E-value=0.011 Score=59.38 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
++.+|.+-|+-||||||+++.|++.+.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999999874
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.84 E-value=0.0006 Score=66.43 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|..+++.||||+|||++++.++..++ ..++.++...+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~~~l 72 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG-----INPIMMSAGEL 72 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeHHHh
Confidence 5688999999999999999999999985 35777775443
No 134
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.81 E-value=0.00049 Score=63.07 Aligned_cols=26 Identities=42% Similarity=0.723 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+.++++.|||||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998754
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.80 E-value=0.00075 Score=60.03 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+..+++.||||+||||+++.++..+. ...+....+++..++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY-EKKGIRGYFFDTKDL 78 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH-HHSCCCCCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HHcCCeEEEEEHHHH
Confidence 57889999999999999999987651 011224566765544
No 136
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.77 E-value=0.00079 Score=63.03 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+|.+|++.|++||||||+++.|++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999999987
No 137
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.75 E-value=0.0014 Score=61.00 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.-+++.||||+||||+++.++..++ ..++.++...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~~ 75 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAEF 75 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHHH
Confidence 3466789999999999999999999874 35677776665
No 138
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.74 E-value=0.0013 Score=65.72 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.++.+.|||||||||+++.|+..+. ..++...+++.|.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~ 170 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRA 170 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeeccccc
Confidence 5689999999999999999999887542 2234566777887753
No 139
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.73 E-value=0.0014 Score=61.50 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|.-+++.||||+||||+++.++..++ ..++.++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~i~~~~~ 81 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSDF 81 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECSCSS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC-----CCEEEEeHHHH
Confidence 45589999999999999999998864 34677776665
No 140
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.72 E-value=0.0013 Score=60.59 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.+.++.+.|||||||||+++.++... ...++.+..+++.+..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~-~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER 70 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCeEEEEEccCC
Confidence 456899999999999999999887321 0011345677776654
No 141
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.72 E-value=0.0032 Score=59.70 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|.-+++.||||+||||+++.++..++ ...+.++...+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~~~ 87 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN-----ATFIRVVGSEL 87 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEGGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehHHH
Confidence 356689999999999999999999874 34566665554
No 142
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.71 E-value=0.0013 Score=59.81 Aligned_cols=41 Identities=5% Similarity=0.114 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+..+++.||+|+||||+++.++..+. ..+..+.+++.+.+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHA 92 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHH
Confidence 56788999999999999999988753 123356788876653
No 143
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.71 E-value=0.0014 Score=59.32 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..+.++++.|+|||||||++..++... +.+..+++.+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~-----~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLS-----GKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHH-----CSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEEECCC
Confidence 446799999999999999999998732 34678888765
No 144
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.70 E-value=0.0016 Score=64.44 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..|.++.|.|||||||||+++.|+..+. ..++...+.+.|.++
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFR 142 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSS
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCC
Confidence 3578999999999999999999987652 223456666777764
No 145
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.68 E-value=0.0012 Score=59.80 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.++++.|+|||||||+++.++...- ..+..+.+++.+.-
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEES 62 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccC
Confidence 467999999999999999999885431 11245777887653
No 146
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.67 E-value=0.0013 Score=62.08 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+..++|.||+||||||++..|+++. ..+|+.|..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g--------~~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG--------HRLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT--------CEEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC--------CeEEecchh
Confidence 46889999999999999999999873 278888865
No 147
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.66 E-value=0.001 Score=60.99 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..+.++.+.|||||||||+.+.|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456799999999999999999998764
No 148
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.003 Score=65.76 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.=+++.||||+|||++|+.++.+++ ..+..|++..+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~s~l 251 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPASGI 251 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehhhh
Confidence 4578899999999999999999999985 35666776655
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.0016 Score=59.96 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.++++.|+|||||||++..++... ...+.++.+++.+.-
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 46799999999999999998887643 122457888887764
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.63 E-value=0.0014 Score=63.50 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+++.||||+||||+++.++..++ .+.+.|+...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~-----~~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG-----LNFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT-----CEEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC-----CCEEEEEcHHH
Confidence 89999999999999999999864 35677776554
No 151
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.57 E-value=0.001 Score=61.97 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.+.++.|.|||||||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999998764
No 152
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.57 E-value=0.0033 Score=65.19 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=34.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.+|++.|++|+||||++..|+..+- ..+..+.++++|.++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~--~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQ--KRGLKPALIAADTYRP 140 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHH--HHHCCEEEECCSCCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeccccCc
Confidence 4578999999999999999999887642 1224688999998753
No 153
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.57 E-value=0.0059 Score=58.37 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+..+++.||||+||||+++.++..+.. ....++.++...+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYME 88 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEEEEGGGCCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEEeecccccc
Confidence 347999999999999999999988631 123477888777644
No 154
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0037 Score=64.93 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.=+++.||||+|||++|+.++.+++ ..+..|+...+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~~~l 242 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNGSEF 242 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecchh
Confidence 4578899999999999999999999985 34566665554
No 155
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0033 Score=65.41 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.=+++.||||+|||++|++++.+++ ..+..|++..+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l 251 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAAPQL 251 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGG
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEehhhh
Confidence 4578899999999999999999999985 24666766555
No 156
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.56 E-value=0.0019 Score=61.76 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|.-+++.||||+||||+++.++..++ ..++.++...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~l 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS-----ATFLNISAASL 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT-----CEEEEEESTTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEeeHHHH
Confidence 467889999999999999999999864 34566776554
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.52 E-value=0.0023 Score=62.86 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=34.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.++++.|++||||||++..|+..+.. ..+..+.+++.|.++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~ 147 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRI 147 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSST
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccc
Confidence 45789999999999999999999876421 1234688999998764
No 158
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0039 Score=64.37 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.=+++.||||+|||++|+.++.+++ ..+..|+..++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l 218 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD-----CKFIRVSGAEL 218 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT-----CEEEEEEGGGG
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC-----CCceEEEhHHh
Confidence 4577899999999999999999999975 34566665555
No 159
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.51 E-value=0.0049 Score=60.38 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..|.-+++.||||+|||++++.++..++ ..++.|+..+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~v~~~~ 86 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSD 86 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT-----CEEEEEEHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC-----CCEEEEchHH
Confidence 3467899999999999999999999874 3456666443
No 160
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.51 E-value=0.0014 Score=59.65 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.+.+.|||||||||+.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988753
No 161
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.47 E-value=0.018 Score=58.91 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+.+|.+-|+-||||||+++.|++.+
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L 73 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALG 73 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 162
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.47 E-value=0.0018 Score=57.94 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+...++.+.|+|||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999998865
No 163
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.46 E-value=0.0053 Score=63.63 Aligned_cols=46 Identities=30% Similarity=0.456 Sum_probs=37.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC-CCCeEEEeCcccccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKET 186 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~-~~~~vvIdaD~ir~~ 186 (446)
...|.+|+++|++|+||||++..|+..+. .. +....+|++|..+..
T Consensus 97 ~~~~~vI~ivG~~GvGKTT~a~~LA~~l~--~~~G~kVllvd~D~~r~~ 143 (433)
T 2xxa_A 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLR--EKHKKKVLVVSADVYRPA 143 (433)
T ss_dssp SSSSEEEEEECSTTSSHHHHHHHHHHHHH--HTSCCCEEEEECCCSSTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--HhcCCeEEEEecCCCCcc
Confidence 35689999999999999999999987652 23 457899999988643
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.46 E-value=0.0014 Score=59.61 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc----cCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW----SGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~----~~~~~~~vvIdaD~ 182 (446)
+...++.+.|||||||||+++.++..... .....+.++++.+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 34689999999999999999999874210 00123467777654
No 165
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.46 E-value=0.0038 Score=58.33 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=34.2
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+..+++.++++.|.+||||||++..|+..+. .+....+||.|.
T Consensus 9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd~D~ 51 (262)
T 1yrb_A 9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVNLDT 51 (262)
T ss_dssp CTTCCCEEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEECCS
T ss_pred cCCcceEEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEeCCC
Confidence 3346789999999999999999999987652 234678899884
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.45 E-value=0.0018 Score=56.07 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+..+++.|++|+||||+++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998875
No 167
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.45 E-value=0.0015 Score=61.99 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=34.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+...-....++.+.|||||||||+.+.|+.-+ .+..|.+.++...+.
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD---KPTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEECT
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCceEEEECCEEcc
Confidence 33333567899999999999999999997643 344567888765553
No 168
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.43 E-value=0.017 Score=57.95 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+.+|.+-|+-||||||+++.|++.+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L 28 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALG 28 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC--
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998875
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.43 E-value=0.0027 Score=64.83 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
-+.+.++++.|||||||||+++.|+..+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3567899999999999999999999876
No 170
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.41 E-value=0.0018 Score=59.84 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+++|.|++||||||+|.+++.. + ...++|.+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCC
Confidence 4789999999999999999865 3 3577887743
No 171
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.39 E-value=0.0017 Score=63.19 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..|.-+++.||||+||||+++.++..++ .+.+.|+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~~~ 84 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPE 84 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEhHH
Confidence 3467899999999999999999999864 3455565433
No 172
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.39 E-value=0.0026 Score=60.54 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|.-+++.||||+||||+++.++..++ ..++.+++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~ 86 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKF 86 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhc
Confidence 355678899999999999999999874 35777887665
No 173
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.38 E-value=0.0021 Score=62.04 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCC-CCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~-~~~vvIdaD~i 183 (446)
....++++.|||||||||+.+.++..+. +. .+.++++.|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI 64 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc
Confidence 4467999999999999999999887542 11 34566666654
No 174
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.38 E-value=0.009 Score=59.67 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
.|.-+++.||||+||||+++.++..++ ..++.|+..
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~v~~~ 118 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSS 118 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEEEHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEeeHH
Confidence 345678889999999999999999874 345556543
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.38 E-value=0.0081 Score=63.02 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.+..+++.||+|+||||+++.++..+++ .++.+++..+..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~-----~~i~in~s~~~~ 115 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGY-----DILEQNASDVRS 115 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTC-----EEEEECTTSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEeCCCcch
Confidence 4578999999999999999999998752 466677766644
No 176
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.37 E-value=0.016 Score=57.68 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=82.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..|++|++-|.-||||||.++.|.+.+. ..++.++....= . ..++.. + . ++
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ld----prg~~V~~~~~P--t---~eE~~~---~-------------y---l~- 134 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMN----PRSARVVALTKP--T---ETERGQ---W-------------Y---FQ- 134 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSC----TTTEEEEECCSC--C---HHHHTS---C-------------T---TH-
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhc----ccCCeEEEeCCc--C---hHHHhc---h-------------H---HH-
Confidence 4599999999999999999999998863 224444432111 0 111111 0 0 01
Q ss_pred HHHHHH-hCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcC
Q 013289 220 LLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 298 (446)
Q Consensus 220 li~~aL-~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~ 298 (446)
.....+ ..|.-||+|-..-..-..+.+. |.. +....+.++..+.. .++....
T Consensus 135 R~~~~LP~~G~IvIfDRswYs~v~~~rv~---------------g~~---~~~e~~~~~~~In~---------FE~~L~~ 187 (304)
T 3czq_A 135 RYVATFPTAGEFVLFDRSWYNRAGVEPVM---------------GFC---TPDQYEQFLKEAPR---------FEEMIAN 187 (304)
T ss_dssp HHHTTCCCTTCEEEEEECGGGGTTHHHHH---------------TSS---CHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHhcccCCeEEEEECCcchHHHHHHHh---------------cCC---CHHHHHHHHHHHHH---------HHHHHHh
Confidence 223345 7899999995543321112110 000 00000112222221 1112344
Q ss_pred CCcEEEEEEEeCCHHHHHHHHHHhhhhcCc---ccchhh-hhhHHHHHHHhHHHhhc
Q 013289 299 KPYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVNS-QLKSHKRFANAFRNYCE 351 (446)
Q Consensus 299 ~gY~I~lv~V~~d~elav~Rv~~R~~~gGR---~Vpv~~-ql~r~~rf~~~~~~~~~ 351 (446)
.|+.+..++++.|++++.+|...|...-.+ .-+.+. ....|.++.+.+..+..
T Consensus 188 ~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~ 244 (304)
T 3czq_A 188 EGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLK 244 (304)
T ss_dssp HTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEECCHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777799999999999999888432111 122222 23445666666665544
No 177
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=96.37 E-value=0.021 Score=57.68 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHH-HHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVL-KDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvA-r~La~~l~ 167 (446)
.++.+|.+-|+-||||||++ +.|++.+.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 34679999999999999999 99988763
No 178
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.36 E-value=0.0072 Score=63.98 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
..|.+|+++|++||||||++..|+..+. ..+....+|++|.++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~--~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ--RKGWKTCLICADTFRA 142 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEeccccch
Confidence 5688999999999999999999986642 2234688999998864
No 179
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0051 Score=64.58 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.=|++.||||+|||++|+.++.+++ ..+..|+...+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~s~L 279 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIGSEL 279 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGG
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEhHHh
Confidence 4588999999999999999999999985 24566665555
No 180
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.35 E-value=0.003 Score=58.00 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhccc----CCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~----~~~~~~vvIdaD~ 182 (446)
....++++.|+|||||||++..++...-.. +...+.++|+.+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 346799999999999999999998742100 0134678888765
No 181
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.34 E-value=0.0024 Score=57.52 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|.-+++.|++|+||||+++.++..+. ..+..+.+++...+
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVPEL 93 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhHHH
Confidence 46788999999999999999988752 22334666775544
No 182
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.33 E-value=0.002 Score=60.42 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+++.||||+||||+++.++..+. .+.+.++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~ 84 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 84 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHH
Confidence 89999999999999999998763 3566666433
No 183
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.31 E-value=0.0083 Score=58.99 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
|.++++.|++|+||||++..|+..+. ..+....+++.|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRP 139 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCH
Confidence 88999999999999999999887642 2345688999998764
No 184
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.29 E-value=0.0032 Score=55.44 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....+++.|++||||||+++.++.... ..+...++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHHh
Confidence 356788899999999999999988752 11223777876655
No 185
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.29 E-value=0.0026 Score=60.41 Aligned_cols=48 Identities=13% Similarity=0.300 Sum_probs=34.7
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+...-+...++.+.|||||||||+.+.|+.-+ .+..|.+.++.-.+
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 66 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY---QPTAGEITIDGQPI 66 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS---CCSBSCEEETTEES
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEh
Confidence 3344444667899999999999999999998653 23456777775443
No 186
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.24 E-value=0.0037 Score=56.98 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.++.++|++||||||++..|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578889999999999999998765
No 187
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0076 Score=62.79 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.|.=|++.||||+|||++|++++.+++ ..+..|+..++
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~~s~l 252 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRIVGSEL 252 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEEESGGG
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC-----CCEEEEEHHHh
Confidence 4578899999999999999999999975 35666766555
No 188
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.23 E-value=0.0022 Score=60.33 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|||||||||+.+.++.-+ .+..|.+.++.-.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD---APTEGKVFLEGKEV 68 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 457799999999999999999997643 33456777775444
No 189
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.21 E-value=0.003 Score=56.45 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.|..+++.|++|+||||+++.++..+.
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356889999999999999999998764
No 190
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.20 E-value=0.0039 Score=61.54 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.|..+++.||||+||||+++.++..++
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 346688999999999999999999874
No 191
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.20 E-value=0.0028 Score=61.39 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=33.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
-....++.+.|||||||||+.+.|+.-+ .+..|.+.++...+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL---SPSHGECHLLGQNLN 76 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS---CCSSCEEEETTEETT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECCEECC
Confidence 3567899999999999999999998653 344577888766553
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.16 E-value=0.0043 Score=61.21 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.-+++.||||+||||+++.++..+. +..+..|+..++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~~l 82 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSDL 82 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECCSS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhHHH
Confidence 3457899999999999999999999862 134666776655
No 193
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.15 E-value=0.0056 Score=58.62 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC--CCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~--~~~~vvIdaD~i 183 (446)
..+.-+++.||||+||||+++.++..++.... ...++.+++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 34567899999999999999998887642111 124667776665
No 194
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.15 E-value=0.0048 Score=58.51 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
..|.-+++.||||+||||+|+.++...+ ..++.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~-----~~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN-----FPFIKIC 96 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT-----CSEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEe
Confidence 4467899999999999999999999864 2455554
No 195
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.15 E-value=0.0026 Score=61.27 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=33.6
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-....++.+.|||||||||+.+.|+.-+ .+..|.+.++...+
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~---~p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNI 70 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEc
Confidence 33333567899999999999999999997653 23446777776444
No 196
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.14 E-value=0.0039 Score=60.47 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.+++++||||+||||+++.++..++ ..+..+|+...
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~ 84 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC 84 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc
Confidence 4577899999999999999999999874 34566665443
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.11 E-value=0.022 Score=59.04 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.|.++.+.|++||||||++..|+..+. ..+....++++|.++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRP 139 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCSSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccccCc
Confidence 688999999999999999999987652 3345688899998864
No 198
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.11 E-value=0.003 Score=60.21 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.. .++.+.|||||||||+.+.++.-+ .+..|.+.++.-.+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 62 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV---KPDRGEVRLNGADI 62 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEC
Confidence 45 789999999999999999998654 23446677765443
No 199
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.10 E-value=0.009 Score=58.12 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.-+++.|++|+||||+++.++..++ ..++.++...+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~-----~~~~~~~~~~~ 91 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMS-----ANIKTTAAPMI 91 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEEGGGC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEecchhc
Confidence 34479999999999999999999874 35677776555
No 200
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.10 E-value=0.0023 Score=62.42 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=34.0
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-+...++.+.|||||||||+.+.|+.-+ .+..|.+.++...+
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~---~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGIL---KPSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCeEEEECCEEC
Confidence 33333567899999999999999999997653 23456778876555
No 201
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.10 E-value=0.0026 Score=55.24 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+..+++.|++|+||||+++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4566899999999999999998875
No 202
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.09 E-value=0.0026 Score=59.93 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=28.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
-+...++.+.|||||||||+.+.|+.-+ .+..|.+.++
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~ 68 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL---EPSEGKIKHS 68 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEEC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC---cCCccEEEEC
Confidence 3557899999999999999999998654 2334455554
No 203
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.08 E-value=0.003 Score=55.92 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
|-+.+|.|+|||||||+.+.|.-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 44899999999999999999987653
No 204
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.07 E-value=0.0026 Score=60.40 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|||||||||+.+.|+.-+ .+..|.+.++.-.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV---RAQKGKIIFNGQDI 70 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEC
Confidence 457899999999999999999998653 33456777775444
No 205
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.06 E-value=0.01 Score=57.04 Aligned_cols=37 Identities=32% Similarity=0.247 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+..+++.|++|+||||+++.++..++ ..+..++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~ 74 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAI 74 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecccc
Confidence 45678899999999999999998874 34666776554
No 206
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.06 E-value=0.0026 Score=60.98 Aligned_cols=44 Identities=27% Similarity=0.251 Sum_probs=32.9
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-+...++.+.|||||||||+.+.|+.-+ .+..|.+.++.-.+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~---~p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFL---KADEGRVYFENKDI 71 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEC
Confidence 333567899999999999999999997653 23456777876544
No 207
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.05 E-value=0.0042 Score=61.25 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+++++|++||||||+.+.|...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47889999999999999999865
No 208
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.05 E-value=0.0033 Score=59.99 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
+++.||||+||||+++.++..+. .+.+.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~ 107 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 107 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH
Confidence 88999999999999999998763 356666643
No 209
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.04 E-value=0.0032 Score=61.07 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=34.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-....++.|.|+|||||||+.+.|+.-+ .+..|.+.++.-.+
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~i 83 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLY---QPTGGKVLLDGEPL 83 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEEG
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCCEEEECCEEc
Confidence 33333567899999999999999999997654 23456778876554
No 210
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.04 E-value=0.0032 Score=61.00 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=32.7
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-....++.+.|||||||||+.+.|+.-+ .+..|.+.++.-.+
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~i 88 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLE---DFDEGEIIIDGINL 88 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEES
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCC---CCCCcEEEECCEEC
Confidence 333567899999999999999999997653 23446777775444
No 211
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.02 E-value=0.0028 Score=60.55 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=33.8
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-+...++.+.|+|||||||+.+.|+.-+ .+..|.+.++.-.+
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY---IPENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEET
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEh
Confidence 33333567899999999999999999997654 23456777876544
No 212
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.02 E-value=0.0033 Score=60.56 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=32.8
Q ss_pred ccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 137 LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 137 ~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-....++.+.|||||||||+.+.|+.-+ .+..|.+.++.-.+
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLI---KPSSGIVTVFGKNV 79 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEET
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 333567899999999999999999997653 23446677775444
No 213
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.99 E-value=0.0075 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l 166 (446)
+++.|++|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998865
No 214
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.99 E-value=0.0035 Score=60.50 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=33.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-....++.+.|+|||||||+.+.|+.-+ .+..|.+.++.-.+
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~---~p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGERK 71 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS---CCSEEEEEETTEEC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCcEEEECCEEC
Confidence 33333567899999999999999999997643 23456777775444
No 215
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.99 E-value=0.0049 Score=57.10 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...-++++|+||+||||++..|.++ ++.+|+-|.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r--------G~~lvaDD~v 49 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR--------GHQLVCDDVI 49 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT--------TCEEEESSEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc--------CCeEecCCEE
Confidence 4578999999999999999999986 3456655543
No 216
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.98 E-value=0.0032 Score=59.73 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=25.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+...-....++.+.|||||||||+.+.|+.-+
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33333567899999999999999999997654
No 217
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.98 E-value=0.0064 Score=59.55 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=34.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.|.++.+.|++|+||||++..|+..+. ..+....+++.|..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRP 139 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccH
Confidence 688888889999999999999887642 2345678889987653
No 218
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.98 E-value=0.007 Score=60.85 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.-++|.|+||+|||++++.++..++ ..++.+++..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~~~l 184 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISAASL 184 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECSCCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeHHHh
Confidence 357899999999999999999999874 35667777665
No 219
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.97 E-value=0.0066 Score=59.17 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhccc----CCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~----~~~~~~vvIdaD~i 183 (446)
..|..+++.||+|+||||+++.++..+.-. +....++.+|+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 456788999999999999999998875100 00124666776554
No 220
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.97 E-value=0.0029 Score=59.45 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|||||||||+.+.|+.-+ .+..|.+.++...+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL---KPLKGEIIYNGVPI 73 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTEEG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEh
Confidence 456789999999999999999997653 23446677765443
No 221
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.94 E-value=0.0057 Score=61.01 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.-+++.|+||+||||+++.++..++ ..++.|++..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~~l 153 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG-----ATFFSISASSL 153 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT-----CEEEEEEGGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC-----CeEEEEehHHh
Confidence 4467899999999999999999999874 34666776554
No 222
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.93 E-value=0.0046 Score=56.31 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..+++++|++||||||+...|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999988764
No 223
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.93 E-value=0.0034 Score=61.10 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.-+++.||||+||||+++.++..+. ..+..+++++++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHHHH
Confidence 45678999999999999999998752 11235788887665
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.93 E-value=0.0077 Score=67.17 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+.|.=|++.||||+||||+++.++.+++ ..+..|+..+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg-----~~~~~v~~~~ 273 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE 273 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT-----CEEEEEEHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEEhHH
Confidence 4688999999999999999999999975 2455565433
No 225
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.91 E-value=0.0076 Score=60.23 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..+.+|+++|.||+||||++..|+..+. ..+....+++.|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~--~~g~kV~vi~~Dp 117 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI--ERGHRVAVLAVDP 117 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH--hCCCceEEEecCC
Confidence 4577899999999999999999987642 3345678888884
No 226
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.90 E-value=0.0064 Score=52.60 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+++.|++|+|||++|+.+..... ..+..++ ++...+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~--~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YRELTP 62 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSST--TTTSCCE-EEECCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC--ccCCCEE-EECCCC
Confidence 68999999999999999988642 1122355 775554
No 227
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.89 E-value=0.0042 Score=59.72 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....+++|.|+|||||||+++.++..... ..+..+.+++.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLEE 74 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEESSS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeEEEEeCcC
Confidence 45689999999999999999998876421 1122466777654
No 228
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.89 E-value=0.0075 Score=62.27 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..-++++.|||||||||+.+.++..+. +..+-+++..|.+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccc
Confidence 356999999999999999999988752 2234455555554
No 229
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.87 E-value=0.0044 Score=60.43 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|||||||||+.+.|+.-+ .+..|.+.++.-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~---~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE---PATSGTVNLFGKMP 85 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS---CCSEEEEEETTBCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCeEEEECCEEc
Confidence 557899999999999999999998654 23446777775444
No 230
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.85 E-value=0.0046 Score=59.74 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=31.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-....++.+.|+|||||||+.+.|+.-.. ..+..|.+.++...+
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~-~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDL 86 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCTT-CEEEEEEEEETTEEG
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEEC
Confidence 35678999999999999999999987410 011235677775444
No 231
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.82 E-value=0.0076 Score=61.06 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...+++|.|||||||||++..++.... ..+..+.+|+++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccc
Confidence 468999999999999999999887642 12345789998764
No 232
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.0055 Score=56.27 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....+++++|+||+||||++.+++... +...+..+.+++.+.-
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER 70 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC
Confidence 346799999999999999998876431 1111345677776653
No 233
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.81 E-value=0.0047 Score=58.96 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|+|||||||+.+.|+.-.. ..+..|.+.++.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~-~~p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENI 69 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTT-CEEEEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEEC
Confidence 4578999999999999999999987410 012235677776554
No 234
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.78 E-value=0.004 Score=58.12 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..++.+.|||||||||+.+.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468899999999999999998754
No 235
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.77 E-value=0.0023 Score=60.32 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|.-+++.||||+||||+++.++..++ ..++.++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~~~ 80 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH-----VPFFSMGGSSF 80 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT-----CCCCCCCSCTT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEechHHH
Confidence 33478999999999999999999874 24555665554
No 236
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.76 E-value=0.0045 Score=59.58 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=33.5
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+...-..+.++.+.|||||||||+.+.|+.-+ .+ .|.+.++.-.+
T Consensus 38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~-~G~I~i~g~~i 83 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY---DA-EGDIKIGGKNV 83 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS---CC-EEEEEETTEEG
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhccC---CC-CeEEEECCEEh
Confidence 333334567899999999999999999998653 12 46677776444
No 237
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.76 E-value=0.0062 Score=61.28 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
...++++.||+||||||+.+.|...+. +..+.+.|+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEEC
Confidence 356899999999999999999987652 345667776
No 238
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.75 E-value=0.0079 Score=59.91 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.-+++.||||+||||+|+.++..++ ..++.++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~-----~~~~~~~~~~~ 108 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD-----IPIAISDATSL 108 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC-----CCEEEecchhh
Confidence 45678999999999999999999874 34666765554
No 239
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.74 E-value=0.0038 Score=61.89 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=34.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
-+...++.|.|+|||||||+.+.|+.-+ .+..|.+.|+.-.+..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~---~p~~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY---DISSGCIRIDGQDISQ 120 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS---CCSEEEEEETTEETTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC---CCCCcEEEECCEEccc
Confidence 3567899999999999999999997654 3445678888766643
No 240
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.71 E-value=0.007 Score=58.10 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
.+|.++|++||||||+++.|.+.+| +.++..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g-------~~~~~~ 32 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS-------AVKYQL 32 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC-------EEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-------CeEEec
Confidence 5899999999999999999988763 666654
No 241
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.67 E-value=0.0085 Score=60.24 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...++++.|+|||||||++..++...- ..+..+.+|+.+.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHA 100 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC
Confidence 467999999999999999999876531 23456899998763
No 242
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.66 E-value=0.013 Score=57.36 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCC-CCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~-~~~~vvIdaD~i 183 (446)
.+++.|++|+||||+++.++..+. .. +..++.+++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIY 84 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccC
Confidence 889999999999999999998762 11 124667775443
No 243
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.66 E-value=0.0068 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.+++++|+|||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999997776654
No 244
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.64 E-value=0.0053 Score=56.44 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l 166 (446)
++.+.|+|||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999998765
No 245
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.64 E-value=0.005 Score=59.04 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|||||||||+.+.|+.-+ .+. |.+.++...+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~---~p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT---SGK-GSIQFAGQPL 63 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS---CCE-EEEEETTEEG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC---CCC-eEEEECCEEC
Confidence 456799999999999999999997654 234 6677775444
No 246
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.0058 Score=59.64 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+.|. +++.||||+||||+++.++..+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 4466 8999999999999999999864
No 247
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.63 E-value=0.014 Score=54.81 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
..+.+|+++|.+||||+|++..+.+.++ ..++.+|.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g----~~~~~vv~ 44 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLG----ADVCAVLR 44 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHC----TTTEEEEC
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcC----CCCceEEE
Confidence 3467999999999999999999988663 12466665
No 248
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.63 E-value=0.0097 Score=56.41 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
....+++++|+|||||||.+..++.++. +++..+.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEE
Confidence 4468999999999999999988877752 2334566664
No 249
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.62 E-value=0.0089 Score=59.33 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
.|.-+++.||||+||||+|+.++..++ ..++.++.-
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~-----~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD-----VPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEechH
Confidence 355678899999999999999999874 345556543
No 250
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.62 E-value=0.007 Score=56.23 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+|.+++++|+|||||||++..+...
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999876443
No 251
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.58 E-value=0.0074 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.|-+.+|.|||||||||+...|.-.+
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999987654
No 252
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.57 E-value=0.0069 Score=61.52 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-...-++.+.|||||||||+.+.|+.-. .+..|.+.++...+
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE---QPDSGEISLSGKTI 68 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS---CCSEEEEEETTEEE
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC---CCCCcEEEECCEEC
Confidence 3557899999999999999999998653 23445677765443
No 253
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.56 E-value=0.0063 Score=58.18 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccC---------CCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG---------AATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~---------~~~~~vvIdaD~i 183 (446)
....+++|.|+|||||||++..++.... .+ ....+.+++.++-
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCC
Confidence 3568999999999999999999886431 11 0234667876653
No 254
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.56 E-value=0.0055 Score=58.77 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..+.++.+.|||||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 557799999999999999999997653
No 255
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.55 E-value=0.0068 Score=60.17 Aligned_cols=27 Identities=19% Similarity=0.141 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+...++.|.|||||||||+++.|+.-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456899999999999999999998764
No 256
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.012 Score=58.66 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc-ccCC----CCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF-WSGA----ATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~-~~~~----~~~~vvIdaD~ir~ 185 (446)
..|..+++.||||+|||++++.++..+. ++.. .-.++.||+-.+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 5678889999999999999999998863 1100 11356788655543
No 257
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.52 E-value=0.0077 Score=61.37 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=35.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+...-....++.+.|||||||||+.+.|+.-. .+..|.+.++...+.
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~---~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE---RPTEGSVLVDGQELT 93 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEECS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC---CCCceEEEECCEECC
Confidence 33334567899999999999999999998643 344567888776553
No 258
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.51 E-value=0.0092 Score=58.02 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC-CCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~-~~~~vvIdaD~ 182 (446)
..+..+++.|++|+||||+++.++..+.-... +..++++++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 45678999999999999999999886510000 12466777543
No 259
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.51 E-value=0.0083 Score=60.59 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.-+++++||+||||||+.+.++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3599999999999999999987764
No 260
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.51 E-value=0.0073 Score=60.14 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
..++++.|+|||||||+.+.|+..+. +..+.+.|+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIE 205 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEEC
Confidence 46899999999999999999987642 344666776
No 261
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.50 E-value=0.0097 Score=62.08 Aligned_cols=37 Identities=32% Similarity=0.464 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|.-+++.||||+||||+++.|+..++ ..++.+++..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~-----~~~~~v~~~~~ 86 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKF 86 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC-----CCceeecchhh
Confidence 45689999999999999999999975 35666666554
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.49 E-value=0.0079 Score=60.86 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..+.++++.|||||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 446799999999999999999998764
No 263
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.49 E-value=0.0044 Score=56.22 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.++.|.|++||||||+++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468888999999999999998765
No 264
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.47 E-value=0.011 Score=61.10 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.-+++.||||+||||+++.++..+. +..++.|+...+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~~l 204 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSSDL 204 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC--
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHHHH
Confidence 3457889999999999999999999861 134566776555
No 265
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.011 Score=57.91 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..|..+++.||+|+||||+++.++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998865
No 266
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.45 E-value=0.0084 Score=61.37 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-+..-++.+.|||||||||+.+.|+.-. .+..|.+.++...+
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE---TITSGDLFIGEKRM 67 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC---CCCCeEEEECCEEC
Confidence 3567899999999999999999998653 34456777776554
No 267
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.41 E-value=0.013 Score=61.64 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|.-+++.||||+||||+++.++...+ ..++.++..++
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~-----~~f~~is~~~~ 85 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEAN-----VPFFHISGSDF 85 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-----CCeeeCCHHHH
Confidence 355588999999999999999999864 34666776555
No 268
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.40 E-value=0.014 Score=54.97 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.-+++.|++|+|||++++.++.... .....++.|+...+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL 68 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC
Confidence 4467899999999999999998752 11234778887766
No 269
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.39 E-value=0.0091 Score=60.53 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=33.2
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-+...++.+.|||||||||+.+.|+.-. .+..|.+.++...+
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i 67 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY---KPTSGEIYFDDVLV 67 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC---CCCccEEEECCEEC
Confidence 33333567899999999999999999998653 23446677765443
No 270
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.39 E-value=0.007 Score=59.40 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
|..+++.||||+||||+++.++..++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999999874
No 271
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.38 E-value=0.0075 Score=60.85 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=35.0
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+...-+...++.+.|||||||||+.+.|+.-. .+..|.+.++...+
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~~~g~~i 64 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH---VPDSGRILLDGKDV 64 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC---CCCCcEEEECCEEC
Confidence 3344444567899999999999999999998653 34456777876554
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.37 E-value=0.012 Score=58.86 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc--c-cCC-CCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF--W-SGA-ATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~--~-~~~-~~~~vvIdaD~i 183 (446)
+...++.|.|+|||||||++..++.... . ++. ++.+++|+....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 4568999999999999999999987641 0 000 123588987653
No 273
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.37 E-value=0.013 Score=59.27 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.++++.|+|||||||++..++...- ..+..+.+|+++.-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s 102 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHA 102 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCC
Confidence 467999999999999999999887531 22356899998653
No 274
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.36 E-value=0.0094 Score=60.49 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=33.5
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-....++.+.|||||||||+.+.|+.-. .+..|.+.++...+
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i 67 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTLLYTIAGIY---KPTSGKIYFDEKDV 67 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCC---CCCceEEEECCEEC
Confidence 33333567899999999999999999998653 23446677775444
No 275
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.28 E-value=0.0081 Score=58.98 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=26.7
Q ss_pred ccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 133 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 133 ~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..+...-....++.+.|+|||||||+.+.|+.-+
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3334444567899999999999999999997653
No 276
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.27 E-value=0.015 Score=57.90 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..+.++.+.|+|||||||+.+.|...+. ..++...+++.|.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDP 93 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcC
Confidence 4578999999999999999999986531 1123445555443
No 277
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.27 E-value=0.01 Score=60.37 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=33.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+...-+...++.+.|||||||||+.+.|+.-. .+..|.+.++...+
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i 75 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE---EPTEGRIYFGDRDV 75 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCC---CCCceEEEECCEEC
Confidence 33333567899999999999999999998643 23446677765443
No 278
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.26 E-value=0.0091 Score=60.49 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=31.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 139 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 139 ~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
-....++.+.|||||||||+.+.|+.-. .+..|.+.++...+
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~i 79 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE---RPTKGDVWIGGKRV 79 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEETTEEC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC---CCCccEEEECCEEC
Confidence 3557899999999999999999998643 23445677765444
No 279
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.26 E-value=0.011 Score=58.15 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
|. +++.||||+||||+++.++..+
T Consensus 47 ~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 47 PH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 45 8899999999999999999875
No 280
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.24 E-value=0.011 Score=62.53 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe-Cccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId-aD~i 183 (446)
.+..++++||+||||||+.+.|+..+. +..+.+.|+ ++++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~~E~ 299 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDTREI 299 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCcccc
Confidence 355799999999999999999987642 334555553 4444
No 281
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.23 E-value=0.0079 Score=58.18 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=31.9
Q ss_pred cccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 134 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 134 ~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
.+...-. ..++.+.|+|||||||+.+.|+.-+ +..|.+.++...
T Consensus 23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~ 66 (263)
T 2pjz_A 23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGME 66 (263)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEE
T ss_pred eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEE
Confidence 3334445 7899999999999999999997542 334667776533
No 282
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.21 E-value=0.018 Score=57.41 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc----cCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW----SGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~----~~~~~~~vvIdaD~ 182 (446)
....++++.|+|||||||++..++...-. .+.+.++++|+.+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45689999999999999999999875210 01235688998765
No 283
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.21 E-value=0.015 Score=57.18 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc----ccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF----WSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~----~~~~~~~~vvIdaD~ 182 (446)
+...++++.|+|||||||++..++...- |.+.+..+++|+.+.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3467999999999999999999987531 111134688998775
No 284
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.21 E-value=0.024 Score=51.30 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
.+..+++.|.+||||||+...|+..++ . .....+|+.|.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~--~-~~~~~~i~~d~ 67 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG--N-EVKIGAMLGDV 67 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT--T-TSCEEEEECSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc--c-CCeEEEEecCC
Confidence 356788889999999999999987742 1 12456666654
No 285
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.19 E-value=0.0092 Score=57.76 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..+.+.|+|||||||+.+.|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998764
No 286
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.19 E-value=0.012 Score=58.87 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
...+.|.|+|||||||+++.|+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999998875
No 287
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.17 E-value=0.017 Score=57.48 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..+.++.+.|+|||||||+...|+..+. ..+....+++.|..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIAVDPS 95 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeecCC
Confidence 4567888999999999999999976541 12345677887764
No 288
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.15 E-value=0.019 Score=57.43 Aligned_cols=41 Identities=24% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...++.+.|+|||||||+...|...+. ..+....++..|-.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecCC
Confidence 367899999999999999999987531 11234566665543
No 289
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.14 E-value=0.021 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
...+++.||||+||||++..++..+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999886
No 290
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=95.13 E-value=0.016 Score=57.06 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=24.5
Q ss_pred cccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 128 CTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 128 ~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.|+...+... ..+.+|+|.|| ||+|+.+.|.+.+
T Consensus 93 ~Ye~V~~~~~--~~~r~ivl~GP---gK~tl~~~L~~~~ 126 (295)
T 1kjw_A 93 SYETVTQMEV--HYARPIIILGP---TKDRANDDLLSEF 126 (295)
T ss_dssp CEEEEEEEEC--CSCCCEEEEST---THHHHHHHHHHHC
T ss_pred CcceeeeecC--CCCCEEEEECC---CHHHHHHHHHhhC
Confidence 3555444433 45678888898 7999999998864
No 291
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.08 E-value=0.012 Score=59.89 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....++.+.|||||||||+.+.|+.-. .+..|.+.++...+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~~ 67 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE---EPSRGQIYIGDKLV 67 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS---CCSEEEEEETTEEE
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC---CCCccEEEECCEEC
Confidence 457899999999999999999998643 23445677765433
No 292
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.07 E-value=0.018 Score=59.37 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.|.-+++.||||+||||+|+.++..++. ...++.+++-.+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~~~~~~~~~ 101 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS---KVPFCPMVGSEV 101 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCEEEEEGGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC---CceEEEEeHHHH
Confidence 3566899999999999999999998741 124556665444
No 293
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.06 E-value=0.016 Score=61.44 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+..+++.||||+||||+++.++..++ .....|+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 466899999999999999999998864 34566766554
No 294
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.04 E-value=0.036 Score=58.19 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
..|.-+++.|+||+|||++++.++..++ ..++.||...+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~l 274 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPEI 274 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchHh
Confidence 3456789999999999999999998863 34666765443
No 295
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.02 E-value=0.008 Score=60.71 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.1
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+...-+...++.+.|||||||||+.+.|+.-. .+..|.+.++...
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~---~p~~G~I~i~g~~ 68 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLD---VPSTGELYFDDRL 68 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSS---CCSEEEEEETTEE
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEE
Confidence 33333567899999999999999999998643 2334566666433
No 296
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.01 E-value=0.021 Score=56.05 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....+++++|+||+||||++..++.... ..+..+.+++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a--~~g~~vl~~slE~ 106 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEM 106 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH--TTTCEEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEECCC
Confidence 4568999999999999999999886642 2224577888764
No 297
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.00 E-value=0.02 Score=60.47 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
|.=++|.||||+||||+++.++...+ .+.+.++..+|
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~ 100 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 100 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHH
Confidence 44489999999999999999998863 45777876555
No 298
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.98 E-value=0.014 Score=53.73 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.|-+.+|.|+|||||||+...|.-.++
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999876654
No 299
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.96 E-value=0.0097 Score=60.54 Aligned_cols=36 Identities=8% Similarity=-0.030 Sum_probs=26.3
Q ss_pred EEEEEeCCHHHHHHHHHHhhhhcCcccchhhhhhHH
Q 013289 304 ELVGVVCDAYLAVVRGIRRAIMMKRAVRVNSQLKSH 339 (446)
Q Consensus 304 ~lv~V~~d~elav~Rv~~R~~~gGR~Vpv~~ql~r~ 339 (446)
.+++|+||++++++|.++|....|..-..+....++
T Consensus 291 ~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~ 326 (359)
T 2ga8_A 291 LVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326 (359)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHH
Confidence 468899999999999999998777643444433333
No 300
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.95 E-value=0.035 Score=55.43 Aligned_cols=84 Identities=19% Similarity=0.301 Sum_probs=55.0
Q ss_pred hhhHHHHhhhhchhhhhhhhhhHHHHHHHHHHHHH-HHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHHHH
Q 013289 85 KDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKA-IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIM 163 (446)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~r~~~~l~e~~~~-~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La 163 (446)
-..+++++++..+-..+.+....+..+.|..=+.. ++. ....+-..- .-...-+++.|++|+||||++..|.
T Consensus 93 peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~------~~~~H~~~v-~~~g~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 93 PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELAR------TTSLHGVLV-DVYGVGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCE------EEEEESEEE-EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhcc------ceeeeEEEE-EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 34567788888888888888878877777653322 221 111111111 1246789999999999999999998
Q ss_pred HhhcccCCCCCeEEEeCccc
Q 013289 164 KESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 164 ~~l~~~~~~~~~vvIdaD~i 183 (446)
.+ +..+|+-|..
T Consensus 166 ~~--------g~~lv~dD~~ 177 (314)
T 1ko7_A 166 KR--------GHRLVADDNV 177 (314)
T ss_dssp HT--------TCEEEESSEE
T ss_pred hc--------CCceecCCeE
Confidence 86 2456655543
No 301
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.93 E-value=0.017 Score=61.54 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+.+.++.+.|||||||||+.+.|+.-+ .+..|.+.+|.-++.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY---DVDSGSICLDGHDVR 408 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCCEEEECCEEhh
Confidence 456789999999999999999998754 344577888765553
No 302
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.91 E-value=0.016 Score=56.67 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.|..+++.|++|+||||+++.+++.+.
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998864
No 303
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.87 E-value=0.029 Score=50.94 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
.+..|++.|.+||||||++..++...+ .......|+.|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~---~~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK---DKYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT---TTCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc---cCCeEEEEECC
Confidence 356677779999999999999988742 11234556544
No 304
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.84 E-value=0.022 Score=57.80 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+.+++|.|+||+||||++..++...- ..+..+.+|+++.-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCC
Confidence 456899999999999999999877531 22356899998864
No 305
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.84 E-value=0.031 Score=55.05 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+++++++|..|+||||++..++..+ +..+..+.+||+|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~l--A~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWM--ARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHH--HHCCCcEEEEeCCC
Confidence 6899999999999999999887764 34456789999997
No 306
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.80 E-value=0.017 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
...+++.|++||||||+.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3678999999999999999998753
No 307
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.77 E-value=0.045 Score=57.93 Aligned_cols=130 Identities=15% Similarity=0.005 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..|++|++-|.-||||+|.++.|.+.+. ..++.++....= -..++.. + . ...
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~----prg~~V~a~~~P-----t~~E~~~---~--y--------------l~R 92 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMD----PRLIEVQSFLRP-----SDEELER---P--P--------------QWR 92 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSC----GGGEEEEECSSC-----CHHHHTS---C--T--------------THH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcC----ccCCeEEEeCCC-----ChhhccC---C--h--------------hhh
Confidence 6799999999999999999999998863 123444431110 0111111 1 0 111
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.....=..|.-+|+|...-. ..+...+ | |.. +....+.++..+.. .++.....
T Consensus 93 ~~~~lP~~G~IvIfdRSwYs----~~~v~rv---~--------g~~---~~~~~~~~~~~i~~---------FE~~L~~~ 145 (500)
T 3czp_A 93 FWRRLPPKGRTGIFFGNWYS----QMLYARV---E--------GHI---KEAKLDQAIDAAER---------FERMLCDE 145 (500)
T ss_dssp HHHHCCCTTCEEEEESCHHH----HHHHHHH---T--------TSS---CHHHHHHHHHHHHH---------HHHHHHHT
T ss_pred HHHhCCCCCeEEEEeCchhh----HHHHHHH---h--------cCC---CHHHHHHHHHHHHH---------HHHHHhcC
Confidence 22333457999999965322 2221111 1 100 00112223333322 22235678
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhh
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAI 324 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~ 324 (446)
|+.+..++++.+++++..|...|..
T Consensus 146 g~~i~KffL~is~eeq~kRl~~R~~ 170 (500)
T 3czp_A 146 GALLFKFWFHLSKKQLKERLKALEK 170 (500)
T ss_dssp TCEEEEEEEECCHHHHHHCC-----
T ss_pred CCeEEEEEEECCHHHHHHHHHHHhc
Confidence 9989999999999999999999865
No 308
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.76 E-value=0.016 Score=61.85 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+.+.++.+.|||||||||+.+.|..-+ .+..|.+.+|.-+++
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~---~p~~G~i~~~g~~~~ 408 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY---DIDEGHILMDGHDLR 408 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT---CCSEEEEEETTEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc---CCCCCeEEECCEEcc
Confidence 345789999999999999999998754 344567888765554
No 309
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.75 E-value=0.02 Score=60.16 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHH--HHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDI--MKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~L--a~~l~~~~~~~~~vvIdaD~i 183 (446)
....++++.|+|||||||+++.+ ..-. .++.+.++|+..+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~---~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGII---EFDEPGVFVTFEET 79 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH---HHCCCEEEEESSSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH---hCCCCEEEEEEeCC
Confidence 45789999999999999999995 3222 12356888887653
No 310
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.74 E-value=0.024 Score=52.26 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
....++++.|++||||||.+-.++.++. +.+-.+.++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEE
Confidence 4468999999999999999988877752 2334556664
No 311
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.72 E-value=0.02 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.++.-+++.|++|+||||+...|...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999864
No 312
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.70 E-value=0.03 Score=55.90 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
.++++++++|..|+||||++..++..+ +..+..+.+||+|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~l--A~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYL--AEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHH--HHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 567899999999999999999887764 33456789999997
No 313
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.69 E-value=0.016 Score=59.77 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.-+++.||||+||||+++.++..+.-..++..++++++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 567899999999999999999886521111235678887665
No 314
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.69 E-value=0.036 Score=55.43 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..+++++++|-.|+||||++..++..+ +..+..+.+||+|-
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~l--a~~g~~vllid~D~ 54 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQL--AKVRRSVLLLSTDP 54 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH--TTSSSCEEEEECCS
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHH--HhCCCcEEEEECCC
Confidence 456899999999999999999998765 34556789999993
No 315
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.67 E-value=0.016 Score=56.08 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccc-CCCCCeEEEeCcc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWS-GAATNAVVVEADA 182 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~-~~~~~~vvIdaD~ 182 (446)
+++.||||+||||+++.++..++.. .....+..+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 8999999999999999998875310 0012355566544
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.66 E-value=0.017 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..-+++.|++||||||+.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 317
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.64 E-value=0.012 Score=52.72 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..+..+++.|+|||||||+.+.|...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999987643
No 318
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.63 E-value=0.019 Score=55.78 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
-+++.||||+||||+++.++..++ ..+..++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~-----~~~~~i~~ 79 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMD-----LDFHRIQF 79 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEec
Confidence 477899999999999999999874 24555553
No 319
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.63 E-value=0.028 Score=53.94 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+++|.|++|+||||+++.++.... ...++++...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~-----~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN-----LPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEEchh
Confidence 899999999999999999998753 2467888654
No 320
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.62 E-value=0.016 Score=64.50 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..|.-+++.||||+||||+++.++..++ ...+.|+..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~-----~~~i~v~~~~ 273 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPE 273 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTT-----CEEEEEEHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcC-----CcEEEEEchH
Confidence 4577899999999999999999998864 3456666433
No 321
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.61 E-value=0.018 Score=59.01 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=33.7
Q ss_pred ccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 135 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 135 ~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+...-+...++.+.|||||||||+.+.|+.-.. ..|.+.|+...+.
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWD 85 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTT
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECC
Confidence 333335678999999999999999999986431 2356778766554
No 322
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.59 E-value=0.028 Score=54.88 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+...+++++|+|||||||++.+++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999998865
No 323
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.58 E-value=0.021 Score=49.51 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+..+++.|++|+||||+...+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999764
No 324
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.50 E-value=0.024 Score=50.60 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+++.+.++-.|+||||++..|+..+ +..+....+||.|.-
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 4566777889999999999988765 234567899999954
No 325
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.49 E-value=0.033 Score=53.73 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
+.+.+|.++|-.|+||||++..|+..+ +..+..+.+||+|.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 345666666999999999998887764 23456789999995
No 326
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.48 E-value=0.023 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
|. +++.||+|+||||+++.+++.+
T Consensus 39 ~~-~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 39 PH-LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CC-EEEESSSSSSHHHHHHHHHHHH
T ss_pred Ce-EEEECcCCcCHHHHHHHHHHHh
Confidence 44 8999999999999999999875
No 327
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.48 E-value=0.025 Score=58.63 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.-+++.||||+||||+++.++..++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4688999999999999999999863
No 328
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.47 E-value=0.077 Score=56.14 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=85.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..|++|++-|.-||||+|.++.|.+.+. ..++.++....= + ..+... + + ++.
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ld----prg~~V~~~~~P--t---~~E~~~---~--------y--------l~R 349 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALD----PRQYHIVPIAAP--T---EEERAQ---P--------Y--------LWR 349 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSC----GGGCEEEECCSC--C---HHHHTS---C--------T--------THH
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcC----ccCCeEEEeCCC--C---hhhhcc---h--------H--------HHH
Confidence 5799999999999999999999998863 123444431110 0 111111 1 0 011
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.....=..|.-+|+|-..-..-.++.+. |+- +....+.++..+.. .++.....
T Consensus 350 ~~~~lP~~G~i~IfDRswY~~~~v~rv~---------------g~~---~~~~~~~~~~~i~~---------FE~~L~~~ 402 (500)
T 3czp_A 350 FWRHIPARRQFTIFDRSWYGRVLVERIE---------------GFC---APADWLRAYGEIND---------FEEQLSEY 402 (500)
T ss_dssp HHTTCCCTTCEEEEESCGGGGGTHHHHH---------------TSS---CHHHHHHHHHHHHH---------HHHHHHHH
T ss_pred HHHhCCCCCeEEEEeCcchhhHHHHHHh---------------cCC---CHHHHHHHHHHHHH---------HHHHHhhC
Confidence 2222334799999996654433333221 110 00111122223222 12234678
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhhhcCc---ccchhh-hhhHHHHHHHhHHHhhc
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAIMMKR---AVRVNS-QLKSHKRFANAFRNYCE 351 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~~gGR---~Vpv~~-ql~r~~rf~~~~~~~~~ 351 (446)
|+.+..++++.|++++..|...|...-.. .-|.+. ....+..+..+...+..
T Consensus 403 g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~ 458 (500)
T 3czp_A 403 GIIVVKFWLAIDKQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVD 458 (500)
T ss_dssp TEEEEEEEEECCHHHHHHHHHHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888899999999999999999753222 122222 22344555555555543
No 329
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.47 E-value=0.012 Score=62.65 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+...++.+.|||||||||+.+.+...+ .+..|.+.+|.-+++.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY---DVTSGQILIDGHNIKD 407 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS---CCSEEEEEETTEEGGG
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC---CCCCcEEEECCEEhhh
Confidence 456789999999999999999987654 3445678888766643
No 330
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.46 E-value=0.022 Score=56.41 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
.|-+.+|.|||||||||+..++.-.++
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999998865443
No 331
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.45 E-value=0.04 Score=54.51 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...++++++|..|+||||++..|+..+ +..+....+||+|--
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~l--A~~G~rVllvD~D~~ 58 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQM--SKVRSSVLLISTDPA 58 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHH--HTSSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 346789999999999999999988765 344567889999953
No 332
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.44 E-value=0.017 Score=61.89 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+...++.+.|||||||||+.+.|..-+ .+..|.+.+|.-+++.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~---~p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY---DVDRGQILVDGIDIRK 421 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS---CCSEEEEEETTEEGGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc---CCCCeEEEECCEEhhh
Confidence 456799999999999999999998654 3445678888766643
No 333
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.41 E-value=0.027 Score=53.75 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
|. +++.||+|+||||+++.+++.+
T Consensus 47 ~~-~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 47 PH-LLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CE-EEEESCTTSSHHHHHHHHHHHH
T ss_pred Ce-EEEECcCCCCHHHHHHHHHHHh
Confidence 44 8999999999999999999875
No 334
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.41 E-value=0.034 Score=55.79 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 181 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD 181 (446)
-+++.|++||||||+++.++.... ..+....++|++
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~--~~~~~~~~~D~~ 72 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREY--MQGSRVIIIDPE 72 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEESS
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHH--HCCCEEEEEeCC
Confidence 467889999999999999887642 234567778765
No 335
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.40 E-value=0.017 Score=61.81 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+.+.++.+.|+|||||||+.+.|+.-+ .+..|.+.+|.-+++
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~---~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY---DPASGTISLDGHDIR 409 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS---CCSEEEEEETTEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCcEEEECCEEhh
Confidence 345689999999999999999998654 344567888865554
No 336
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.40 E-value=0.04 Score=52.87 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=27.9
Q ss_pred cccCCCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 136 ALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 136 ~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
..+..+..+++++|+|||||||.+-.++.+.. +++-.+.++.
T Consensus 13 ~~~~~~g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~k 54 (234)
T 2orv_A 13 SPSKTRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIK 54 (234)
T ss_dssp -----CCEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEE
T ss_pred CCCCCceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEe
Confidence 33446689999999999999998877766642 3344556654
No 337
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.38 E-value=0.048 Score=50.11 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCC-CCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~-~~~~vvIdaD~i 183 (446)
+.++.+.++-.|+||||++..|+..+ +.. +..+.+||.|.-
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~l--a~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFAL--SQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHH--TTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHH--HhCcCCCEEEEECCCC
Confidence 34566777889999999999998875 344 567899999964
No 338
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.37 E-value=0.025 Score=56.41 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=49.3
Q ss_pred chhhhHHHHhhhhchhhhhhhhhhHHHHHHHHHHHH-HHHhcCCCccccccccccccCCCCeEEEEEcCCCCcHHHHHHH
Q 013289 83 KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMK-AIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKD 161 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~r~~~~l~e~~~-~~~~~~~~~~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~ 161 (446)
+.-..+++++.+.++--.+.++...++...|..=+. .++. ....+-..- .-...-++++|+||+||||+|..
T Consensus 94 ~pp~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~la~------~~~~H~~~v-~~~g~gvli~G~sG~GKStlal~ 166 (312)
T 1knx_A 94 TDPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFAT------VAQIHGVLL-EVFGVGVLLTGRSGIGKSECALD 166 (312)
T ss_dssp CCCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHTCC------CEEEEEEEE-EETTEEEEEEESSSSSHHHHHHH
T ss_pred CCCHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHhhh------cceeEEEEE-EECCEEEEEEcCCCCCHHHHHHH
Confidence 344567788888888777777766666666655222 2221 111122111 13468899999999999999999
Q ss_pred HHHh
Q 013289 162 IMKE 165 (446)
Q Consensus 162 La~~ 165 (446)
|..+
T Consensus 167 l~~~ 170 (312)
T 1knx_A 167 LINK 170 (312)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9876
No 339
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.36 E-value=0.035 Score=56.91 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcc----cCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFW----SGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~----~~~~~~~vvIdaD~ 182 (446)
....++.|.|+|||||||++..++-..-. .+.+.+.++|+...
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 34679999999999999999987633110 01234588898775
No 340
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.34 E-value=0.027 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
|. +++.||+|+||||+++.+++.+
T Consensus 43 ~~-~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 43 PH-MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred Ce-EEEECcCCCCHHHHHHHHHHHh
Confidence 55 8999999999999999998875
No 341
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.34 E-value=0.054 Score=52.91 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+.-+++.|+||+|||++|+.+..... .....++.||...+.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAALN 65 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSSCC
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCCCC
Confidence 34467899999999999999998642 122347788877763
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.33 E-value=0.031 Score=48.15 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.++.-|++.|.+||||||+...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45677889999999999999999764
No 343
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.31 E-value=0.025 Score=56.97 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+-+.+|.|+|||||||+...+.-.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 348889999999999999988643
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.26 E-value=0.028 Score=50.59 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..+.-|++.|++|+||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999998763
No 345
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.25 E-value=0.028 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.-|++.|.+||||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999865
No 346
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.22 E-value=0.013 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l 166 (446)
+++.|++|+|||++|+.+....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 6789999999999999998763
No 347
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.21 E-value=0.026 Score=55.42 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+.-+++.||+|+|||+++..++..+. ...+..+.++++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~-~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS-EKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH-HHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEHHHH
Confidence 45678899999999999999987642 012234666776544
No 348
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.15 E-value=0.026 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..++.+.|+|||||||+.+.|. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5789999999999999999998 64
No 349
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.15 E-value=0.046 Score=52.63 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=30.7
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 142 PVLLLMG-GGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 142 P~LIlla-G~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+.+|+++ +.+|+||||++..|+..+ +..+..+.+||+|.-+.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~l--A~~G~rVLLID~D~~~~ 124 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAY--AQAGYKTLIVDGDMRKP 124 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCSSSC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCCCCc
Confidence 4455555 558999999999888765 23456789999997643
No 350
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.022 Score=59.46 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..-++.|.|+|||||||+++.|+.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4567888899999999999998764
No 351
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.14 E-value=0.033 Score=47.88 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.-|++.|.+|+||||+...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3466899999999999999999865
No 352
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.14 E-value=0.052 Score=51.40 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEe
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 179 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvId 179 (446)
....|++++|++||||||.+-.++.++. +.+-.+.++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ--FAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEE
Confidence 4468999999999999999988877652 2334556664
No 353
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.11 E-value=0.022 Score=60.98 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+...++.+.|||||||||+.+.|..-+ .+..|.+.+|.-+++.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~---~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI---DPERGRVEVDELDVRT 409 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS---CCSEEEEEESSSBGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc---cCCCcEEEECCEEccc
Confidence 345689999999999999999987654 3445678888766643
No 354
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.11 E-value=0.036 Score=52.15 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+++.+.+|-.|+||||++..|+..+ + .+..+.+||+|.-
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~l--a-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLL--S-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHH--T-TTSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHH--H-CCCCEEEEECCCC
Confidence 34566668889999999999998876 3 4567899999954
No 355
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.10 E-value=0.027 Score=47.53 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~ 165 (446)
+++.|++|+||||+...+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 678899999999999999865
No 356
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.09 E-value=0.025 Score=60.21 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+...++.+.|||||||||+.+.|+..+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 446899999999999999999998653
No 357
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.03 E-value=0.048 Score=53.28 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=31.1
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 141 SPVLLLMGG-GMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 141 ~P~LIllaG-~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.+.+|+++| .+|+||||++..|+..+ +..+..+.+||+|.-+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~l--A~~G~rVLLID~D~r~~ 146 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVI--AQSDQKVLFIDADLRRG 146 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHH--HHTTCCEEEEECCTTTC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHH--HhCCCcEEEEECCCCCc
Confidence 345565555 58999999999888764 23456789999997533
No 358
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.03 E-value=0.027 Score=59.82 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
...-++.+.|+|||||||+.+.|+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999998753
No 359
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.01 E-value=0.042 Score=55.24 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
...-+++++|+||+||||++..++...- ..+..+.+++.+.=
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSLEMS 85 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEESSSC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCC
Confidence 3467999999999999999999877631 12345778887653
No 360
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.01 E-value=0.017 Score=55.97 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l 166 (446)
+++.|+||+||||+++.++..+
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 8899999999999999999876
No 361
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.00 E-value=0.059 Score=51.49 Aligned_cols=39 Identities=10% Similarity=0.252 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..-|++.|++|+||||++-.++..+- ..+....+++.|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH--HCCCCEEEEEeCC
Confidence 35699999999999999887776541 2334677888886
No 362
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=93.97 E-value=0.051 Score=53.70 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=78.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccccchHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 219 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~~d~irk~L~~~g~~~d~~~~ae~v~~ea~~~a~~ 219 (446)
..|+||++-|--||||++.++.|.+.+. .-++.++.... |.+. +..|. .++.
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ld----PRg~~V~a~~~----------------Pt~e----E~~~~----ylwR 124 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMD----PQGVQLTAFKA----------------PTDE----EKSHD----FLWR 124 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSC----GGGEEEEECCS----------------CCHH----HHTSC----TTHH
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcC----cCceEEEECCC----------------CChh----hhcCC----HHHH
Confidence 4689999999999999999999999873 12344443211 1110 11011 0111
Q ss_pred HHHHHHhCCCcEEEeCcCCCHHHHHHHHHHHhhcccccccccccceecCCcchhhhhhhhhhhcchhhHhhhhhhhhcCC
Q 013289 220 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRK 299 (446)
Q Consensus 220 li~~aL~~G~sVViD~T~s~~~~re~lia~Ar~~h~~~y~~~pGY~v~~~g~~~E~yw~~v~~~~~~~~~~~~~~~~~~~ 299 (446)
.....=..|.-+|+|.+.-..-.++.+ | |+. +....+.++..+.. .++.....
T Consensus 125 ~~~~lP~~G~I~IFdRSwY~~vlverV-------~--------g~~---~~~~~~~~~~~I~~---------FE~~L~~~ 177 (289)
T 3rhf_A 125 IEKQVPAAGMVGVFDRSQYEDVLIHRV-------H--------GWA---DAAELERRYAAIND---------FESRLTEQ 177 (289)
T ss_dssp HHTTCCCTTCEEEEESCGGGGGTHHHH-------T--------TSS---CHHHHHHHHHHHHH---------HHHHHHHT
T ss_pred HHHhCCCCCeEEEEeCchhhhHhHHHH-------h--------cCC---CHHHHHHHHHHHHH---------HHHHHHhC
Confidence 333344579999999887655443332 1 110 01122233333332 22335678
Q ss_pred CcEEEEEEEeCCHHHHHHHHHHhhh
Q 013289 300 PYRIELVGVVCDAYLAVVRGIRRAI 324 (446)
Q Consensus 300 gY~I~lv~V~~d~elav~Rv~~R~~ 324 (446)
|+.|.=++++.+.+++.+|...|-.
T Consensus 178 G~~ilKf~LhIskeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 178 GTTIVKVMLNISKDEQKKRLIARLD 202 (289)
T ss_dssp TEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCHHHHHHHHHHHhc
Confidence 9888889999999999999999875
No 363
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.97 E-value=0.045 Score=52.44 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
.+++|.|++|+||||+++.+++.. ++++++.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeec
Confidence 588999999999999999999874 367887643
No 364
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.96 E-value=0.036 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|++||||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998865
No 365
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.95 E-value=0.033 Score=47.92 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.-|++.|++||||||+...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998765
No 366
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.92 E-value=0.027 Score=58.52 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.1
Q ss_pred CCCeE--EEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVL--LLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~L--IllaG~~GSGKSTvAr~La~~ 165 (446)
+.+.+ +.|.|+|||||||+.+.|...
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45677 999999999999999999764
No 367
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.89 E-value=0.036 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+||||||+...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999865
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.88 E-value=0.038 Score=48.53 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.-|++.|++||||||+...|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999875
No 369
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.88 E-value=0.03 Score=59.02 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.++.|.|||||||||+.+.|+.-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999998654
No 370
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.82 E-value=0.039 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.-+++.|.+|+||||+...|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999864
No 371
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.80 E-value=0.034 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.=|++.|++||||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 44889999999999999999865
No 372
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.79 E-value=0.04 Score=54.29 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
+.|..+++.||+|+||||+++.+++.+.
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 5578999999999999999999999874
No 373
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.77 E-value=0.055 Score=57.42 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
..+++++++|.+|+||||++-.++..+ +..+..+.+||+|-
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~l--A~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRL--AEQGKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHH--HHCCCcEEEEECCC
Confidence 456789999999999999999887764 33456789999994
No 374
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.75 E-value=0.045 Score=56.69 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
....+++++|+||+||||++..++...- ..+..+.+++.+.=
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a--~~g~~vl~fSlEms 236 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEMG 236 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHH--HTTCEEEEECSSSC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHH--HcCCEEEEEECCCC
Confidence 4467999999999999999999887642 12346788887654
No 375
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.73 E-value=0.052 Score=47.16 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.+.=|++.|.+|+||||+...|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999876
No 376
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.72 E-value=0.036 Score=57.15 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.++.+.|+|||||||+.+.|...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3568999999999999999999873
No 377
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.71 E-value=0.036 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|++|+||||+...+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 355889999999999999999875
No 378
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.71 E-value=0.066 Score=53.68 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhccc--CCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~--~~~~~~vvIdaD~ 182 (446)
...++++++|-.|.||||++..|+-.+ + ..+..+.+||+|.
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~l--A~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQM--ALSQPNKQFLLISTDP 58 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHH--HHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH--HHhcCCCeEEEEECCC
Confidence 346899999999999999999887664 4 4456789999997
No 379
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.70 E-value=0.04 Score=55.47 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
+.++++.|+||+||||++.+++...+ ..+.+|+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEe
Confidence 45789999999999999999987532 34567776
No 380
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.70 E-value=0.063 Score=55.13 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....+++++|+||+||||++..++...-. ..+..+.+++...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE~ 239 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEM 239 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECCC
Confidence 34679999999999999999998876321 1234578888764
No 381
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.68 E-value=0.039 Score=56.91 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....+++++|+||+||||++..++...-. ..+..+.+++.+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEM 242 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCC
Confidence 45679999999999999999998876421 1123577888664
No 382
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.67 E-value=0.053 Score=46.18 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.+.-|++.|.+|+||||+...+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999764
No 383
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.67 E-value=0.043 Score=46.26 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+||||||+...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 355889999999999999999865
No 384
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.67 E-value=0.055 Score=49.53 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.++.+.++..|+||||++..|+..+ +..+....+||.|.-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVAL--GDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCCCC
Confidence 3566777889999999999888765 233457899999974
No 385
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.65 E-value=0.053 Score=56.41 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCC-CCCeEEEeCccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 183 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~-~~~~vvIdaD~i 183 (446)
....+++|+|+||+||||++.+++...- .. +..+.+++.+.=
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEES 282 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSSC
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccCC
Confidence 4567999999999999999999987642 22 446888987653
No 386
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.61 E-value=0.039 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.=|++.|++|+||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999999864
No 387
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.61 E-value=0.052 Score=47.64 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.-|++.|.+||||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999754
No 388
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.59 E-value=0.038 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.=|++.|.+|+||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 389
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.59 E-value=0.038 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|++||||||+...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999765
No 390
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.58 E-value=0.036 Score=58.85 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..-++.|.|+|||||||+.+.|+...
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998754
No 391
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.58 E-value=0.03 Score=54.99 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~ 164 (446)
|-+.++.|+|||||||+...|.-
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 44999999999999999999874
No 392
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.57 E-value=0.049 Score=46.83 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.=|++.|.+|+||||+...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998754
No 393
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.57 E-value=0.072 Score=53.53 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhccc--CCCCCeEEEeCc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEAD 181 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~--~~~~~~vvIdaD 181 (446)
..+.+++++|-.|+||||++..++..+ + ..+..+.+||+|
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~l--a~~~~g~~vllid~D 57 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQL--ALAQPNEQFLLISTD 57 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHH--HHHCTTSCEEEEECC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH--HHhcCCCeEEEEECC
Confidence 445899999999999999999987654 3 445678999999
No 394
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.57 E-value=0.063 Score=58.73 Aligned_cols=43 Identities=16% Similarity=0.496 Sum_probs=33.1
Q ss_pred CCCe-EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~-LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
.+|. -+++.||||+|||++|+.++..+. .....++.||...+.
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYM 561 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhcc
Confidence 3454 689999999999999999998863 233467888876664
No 395
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.56 E-value=0.049 Score=49.79 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 145 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
|.++|-.|+||||++..|+..+ +..+..+.+||.|.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM--ASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH--TTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 3348999999999999998875 34556789999997
No 396
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.037 Score=59.80 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+...++.+.|||||||||+.+.|+..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 457899999999999999999998754
No 397
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.52 E-value=0.04 Score=46.93 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+|+||||+...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 398
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.51 E-value=0.036 Score=48.86 Aligned_cols=22 Identities=41% Similarity=0.786 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~ 164 (446)
.-+++.|++|+||||+.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999999999875
No 399
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.50 E-value=0.038 Score=56.06 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..++.+.|+|||||||+.+.|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 468999999999999999999865
No 400
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.50 E-value=0.04 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.-|++.|.+||||||+...|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 401
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.48 E-value=0.075 Score=50.14 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
..++.+++|-.|+||||++..|+..+ +..+..+.+||+|.-.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHY--ARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHH--HHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCC
Confidence 34667778889999999999888765 2334578999999753
No 402
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.47 E-value=0.072 Score=49.94 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|.+.|-.|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCCC
Confidence 44447999999999999988765 344557899999964
No 403
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.45 E-value=0.044 Score=54.94 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~ 164 (446)
-.|-+.+++|+|||||||+..+|.-
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999864
No 404
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.45 E-value=0.044 Score=48.00 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+|+||||+...|...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999875
No 405
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.44 E-value=0.038 Score=61.59 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.+++|.|||||||||+.+.++.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4568999999999999999998653
No 406
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.43 E-value=0.038 Score=59.59 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..-++.|.|||||||||+.+.|+..+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998753
No 407
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.43 E-value=0.042 Score=48.06 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.++.-|++.|.+|+||||+...+...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999999865
No 408
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.42 E-value=0.061 Score=54.17 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
++.+.|+|||||||++-+++...--...+..+++||+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 789999999999999988766531000134688999765
No 409
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.40 E-value=0.061 Score=49.86 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.++.+.++-.|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGL--AQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHH--HhCCCcEEEEECCCC
Confidence 3566778889999999999888765 234567899999973
No 410
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.40 E-value=0.068 Score=49.93 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.++.+++|-.|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVAL--AQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHH--HHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHH--HhCCCcEEEEECCCC
Confidence 3566778899999999999888765 233457899999974
No 411
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.36 E-value=0.041 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.|.+.+|.|||||||||+...+.--+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 36899999999999999999987654
No 412
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.35 E-value=0.26 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~ 164 (446)
.+.+++|.|++|+||||++..++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 467999999999999999998853
No 413
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.34 E-value=0.054 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.=|++.|.+||||||+...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 414
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.33 E-value=0.032 Score=59.35 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
...++.|.|+|||||||+.+.|+.-+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998653
No 415
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.31 E-value=0.041 Score=53.69 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..++.+.|+|||||||+.+.|+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 468899999999999999999765
No 416
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.29 E-value=0.052 Score=50.82 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..+.-|+|.|.+||||||+...|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 45677999999999999999999865
No 417
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.27 E-value=0.049 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+|+||||+...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 418
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.27 E-value=0.045 Score=54.03 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.5
Q ss_pred CCeEEEE--EcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLM--GGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIll--aG~~GSGKSTvAr~La~~l 166 (446)
.|..++| .|++|+||||+++.++..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4667788 9999999999999998764
No 419
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.24 E-value=0.043 Score=46.63 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~ 164 (446)
=|++.|.+|+||||+...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998854
No 420
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.23 E-value=0.048 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..=|++.|.+|+||||+...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 421
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.22 E-value=0.047 Score=46.53 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013289 144 LLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~ 164 (446)
=|++.|.+|+||||+...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999864
No 422
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.22 E-value=0.02 Score=57.54 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l 166 (446)
++++.|+|||||||+.+.|.--+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999985443
No 423
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.22 E-value=0.054 Score=46.33 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+|+||||+...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998754
No 424
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.21 E-value=0.05 Score=48.20 Aligned_cols=26 Identities=15% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..+.-|++.|.+|+||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34566899999999999999999865
No 425
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.20 E-value=0.049 Score=47.18 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+|+||||+...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999864
No 426
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.20 E-value=0.038 Score=59.63 Aligned_cols=27 Identities=22% Similarity=0.339 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
....++.+.|+|||||||+.+.|+..+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456899999999999999999998654
No 427
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.20 E-value=0.048 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+||||||+...|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999865
No 428
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.14 E-value=0.055 Score=47.59 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..+.-+++.|++|+||||+...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 44677899999999999999998754
No 429
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.07 E-value=0.043 Score=60.82 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.++++.|||||||||+.+.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 468999999999999999998653
No 430
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.06 E-value=0.048 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+|+||||+...|...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998653
No 431
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.06 E-value=0.064 Score=46.53 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..-|++.|.+|+||||+...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999865
No 432
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.04 E-value=0.047 Score=47.31 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~ 164 (446)
+.+.-|++.|++||||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999988864
No 433
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.04 E-value=0.052 Score=46.49 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.-|++.|.+|+||||+...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56888899999999999999864
No 434
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.99 E-value=0.12 Score=50.32 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
.++.+.++-+|+||||++..|+..+ +..+..+.+||+|.-+.
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~l--A~~G~rVLLID~D~~~~ 134 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVI--SQTNKRVLLIDCDMRKG 134 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHH--HTTTCCEEEEECCTTTC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHH--HhCCCCEEEEeccCCCC
Confidence 4566777779999999999988775 34456789999997643
No 435
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.99 E-value=0.1 Score=47.89 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++.++++-.|+||||++..|+..+ +..+ ...+||.|.-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l--a~~g-~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL--ALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH--HTTS-CEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH--HhcC-CEEEEECCCC
Confidence 566778999999999999998875 3445 7899998864
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.047 Score=58.97 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
-++.|.|+|||||||+.+.|+.-+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999998654
No 437
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.98 E-value=0.053 Score=60.50 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
..|.=+++.||||+|||.+|+.++.+++
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 3466789999999999999999999974
No 438
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.96 E-value=0.06 Score=45.63 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~ 165 (446)
|++.|.+|+||||+...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999765
No 439
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.93 E-value=0.054 Score=47.01 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+||||||+...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999865
No 440
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.89 E-value=0.051 Score=57.04 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
....+++|.|+|||||||+++.++.... ..+..++++..++
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~~G~~vi~~~~ee 319 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEE 319 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH--hCCCCEEEEEEeC
Confidence 3467999999999999999999987542 1122345666544
No 441
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.88 E-value=0.056 Score=46.59 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+|+||||+...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 442
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.87 E-value=0.053 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 013289 145 LLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 145 IllaG~~GSGKSTvAr~La~~ 165 (446)
|++.|.+|+||||+...+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 678899999999999998764
No 443
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.87 E-value=0.061 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~ 164 (446)
|-+.++.|+|||||||+...+.-
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 45999999999999999999874
No 444
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.86 E-value=0.073 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.-|++.|.+||||||+...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45778899999999999999765
No 445
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.82 E-value=0.069 Score=47.16 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+||||||+...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999765
No 446
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.79 E-value=0.097 Score=57.05 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCe-EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 141 SPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 141 ~P~-LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+|. -+++.||||+|||++|+.++..++ ..++.||..++.
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~ 525 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYM 525 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCS
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhc
Confidence 354 689999999999999999999874 356778876653
No 447
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.72 E-value=0.062 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.-|++.|.+|+||||+...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999999765
No 448
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.71 E-value=0.091 Score=50.12 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
+|.+.|-.|+||||++..|+..+ +..+..+.+||+|.-
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~L--a~~G~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAAL--AEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHH--HHCCCeEEEEecCCC
Confidence 44457999999999999888765 233457899999964
No 449
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.71 E-value=0.068 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+|+||||+...|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456899999999999999999865
No 450
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=92.71 E-value=0.29 Score=53.56 Aligned_cols=93 Identities=9% Similarity=0.183 Sum_probs=52.8
Q ss_pred cccccccccccCCCCeEEEEEcCCCCcHHHHHHHHHHhhc--c--------------cCCCCCeEEE-eCcccccchHHH
Q 013289 128 CTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVV-EADAFKETDVIY 190 (446)
Q Consensus 128 ~~~~~~~~~~~~~~P~LIllaG~~GSGKSTvAr~La~~l~--~--------------~~~~~~~vvI-daD~ir~~d~ir 190 (446)
-|+...+... ..+.+|+|.|| ||+|+.+.|.+.+. + +..+.++.+| +.++|.
T Consensus 519 ~Ye~V~~~~~--~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~------ 587 (721)
T 2xkx_A 519 SYETVTQMEV--HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKME------ 587 (721)
T ss_pred CceeeecccC--CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHH------
Confidence 3665544432 45678889999 39999999988642 1 0122334445 444441
Q ss_pred HHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeCc
Q 013289 191 RALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT 236 (446)
Q Consensus 191 k~L~~~g~~~d~~~~ae~v~~ea~~~a~~li~~aL~~G~sVViD~T 236 (446)
+.+.. + .+.+.+++ |...|....+.++..+++|+++|+|..
T Consensus 588 ~~i~~-~---~flE~~~~-~g~~YGt~~~~v~~~~~~g~~~ildi~ 628 (721)
T 2xkx_A 588 KDIRA-H---KFIEAGQY-NSHLYGTSVQSVREVAEQGKHCILDVS 628 (721)
T ss_pred HHHhc-C---CceEEEEE-CCccceeeHHHHHHHHHCCCcEEEeCC
Confidence 11221 1 12222222 333444455568889999999999963
No 451
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.65 E-value=0.064 Score=53.82 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
+...+.+.|+|||||||+.+.|+...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998875
No 452
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.63 E-value=0.051 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~ 164 (446)
.=|++.|+|||||||+.+.|..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4469999999999999999764
No 453
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.62 E-value=0.046 Score=61.84 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIM 163 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La 163 (446)
...+++|.|||||||||+.+.++
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 45799999999999999999875
No 454
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.62 E-value=0.056 Score=61.26 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDI 162 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~L 162 (446)
.+.+++|.|||||||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999988
No 455
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.61 E-value=0.068 Score=46.16 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..=|++.|.+|+||||+...+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999764
No 456
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.60 E-value=0.082 Score=58.81 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=33.0
Q ss_pred CCe-EEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 141 SPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 141 ~P~-LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+|. -+++.||+|+|||++|+.|+..+. ..+..++.||...+..
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYME 629 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccc
Confidence 343 789999999999999999998763 1224578888777643
No 457
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.60 E-value=0.11 Score=48.41 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
.+..|+++.|++||||||-.-+....+. ..+..+.++.+
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~--~~~~kvl~~kp 56 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKY 56 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEcc
Confidence 4578999999999999975544444432 12345677754
No 458
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.57 E-value=0.068 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|+|.|.+|+||||+...|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 459
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.52 E-value=0.073 Score=50.00 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
++++.++++-.|+||||++..|+..+ +..+..+.+||.|.-
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYL--ARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHH--HHCCCCEEEEECCCC
Confidence 34566667888999999999888765 233457899999964
No 460
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.52 E-value=0.031 Score=62.07 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccc
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 183 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~i 183 (446)
.+..+++.||||+||||+++.++..++ .+++.|+...+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i~v~~~~l 547 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHT-----CCCCCCCCSSS
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhC-----CCEEEEechHh
Confidence 456789999999999999999999874 35566665544
No 461
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.51 E-value=0.068 Score=49.47 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..+.-|+|.|.+|+||||+...|....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678999999999999999998753
No 462
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.49 E-value=0.082 Score=45.58 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.=|++.|.+|+||||+...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3566888999999999999998765
No 463
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.48 E-value=0.059 Score=55.86 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l 166 (446)
=+++.|+||+||||+++.++..+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999885
No 464
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.46 E-value=0.071 Score=46.98 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.+.=|+|.|.+|+||||+...+...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 34566899999999999999999865
No 465
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.45 E-value=0.1 Score=45.81 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.=|++.|.+||||||+...|...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3566899999999999999999864
No 466
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.45 E-value=0.14 Score=50.30 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhc-ccCCCCCeEEEeCc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEAD 181 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~-~~~~~~~~vvIdaD 181 (446)
+..+++.||+|+||||+++.+++..+ |....+++..++++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 56899999999999999999988532 22223567778765
No 467
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.44 E-value=0.077 Score=46.48 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.=|++.|.+|+||||+...+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999875
No 468
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.44 E-value=0.076 Score=53.63 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=20.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIM 163 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La 163 (446)
+++.=|+|-|.+||||||+++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 446778899999999999999984
No 469
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.37 E-value=0.087 Score=45.91 Aligned_cols=26 Identities=42% Similarity=0.451 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.+.-|++.|.+|+||||+...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34677999999999999999998753
No 470
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.32 E-value=0.064 Score=57.37 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhhc
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKESF 167 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l~ 167 (446)
..+++.||||+||||+++.++..+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4788999999999999999998764
No 471
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.30 E-value=0.079 Score=47.05 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
++.-|++.|++|+||||+...+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 472
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.26 E-value=0.032 Score=55.30 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
...++.+.|+|||||||+.+.|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 3579999999999999999998654
No 473
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.23 E-value=0.085 Score=46.29 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.=|++.|.+|+||||+...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999999764
No 474
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.22 E-value=0.1 Score=45.67 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.+.-|++.|.+|+||||+...+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34677899999999999999999854
No 475
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.20 E-value=0.065 Score=46.40 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.-|++.|.+|+||||+...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999854
No 476
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.18 E-value=0.082 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.201 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.=|++.|.+|+||||+.+.+...+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999998776553
No 477
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.16 E-value=0.068 Score=61.09 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q 013289 142 PVLLLMGGGMGAGKSTVLKDI 162 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~L 162 (446)
+.+++|.|||||||||+.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999987
No 478
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.12 E-value=0.081 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.-|+|.|.+|+||||+...|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 479
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.12 E-value=0.073 Score=60.64 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~ 164 (446)
..+.++.+.|+|||||||+.+.|+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999984
No 480
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.10 E-value=0.081 Score=46.44 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..=|++.|.+|+||||+...|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 481
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.07 E-value=0.099 Score=46.47 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.+.=|+|.|.+|+||||+...+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34577999999999999999999765
No 482
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.05 E-value=0.072 Score=62.31 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCccccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 185 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir~ 185 (446)
+....+.+.|++||||||+++.|...+ .+..|.+.||.-+++.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~---~~~~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY---DVLKGKITIDGVDVRD 484 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS---CCSEEEEEETTEETTT
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc---ccccCcccCCCccchh
Confidence 345689999999999999999998765 3455678887655543
No 483
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.04 E-value=0.091 Score=46.80 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.+.=|++.|.+|+||||+...|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 484
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.02 E-value=0.095 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMK 164 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~ 164 (446)
++.-|++.|++|+||||+...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 355688999999999999999864
No 485
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.089 Score=46.37 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
..=|++.|.+|+||||+...+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3458999999999999999998753
No 486
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.97 E-value=0.14 Score=48.64 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeC
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 180 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIda 180 (446)
..+.+.+++|++||||||.+-..+.++. ..+..+.++.+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~--~~g~kvli~kp 64 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI--YAKQKVVVFKP 64 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH--HcCCceEEEEe
Confidence 4579999999999999995544344432 22345666643
No 487
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.95 E-value=0.028 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~l 166 (446)
-++.|.|||||||||+.+.|+..+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 356788999999999999998765
No 488
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.93 E-value=0.085 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.=|++.|.+|+||||+...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999765
No 489
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.93 E-value=0.068 Score=62.35 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcccc
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 184 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ir 184 (446)
+....+.+.|++||||||+.+.|...+ .+..|.+.||..+++
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~---~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY---DPLDGMVSIDGQDIR 455 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS---CCSEEEEEETTEEGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEHH
Confidence 345689999999999999999997654 344567888865554
No 490
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.92 E-value=0.1 Score=50.98 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
...+++.||||+|||+++..|+..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3579999999999999999999864
No 491
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.92 E-value=0.084 Score=54.66 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~l 166 (446)
.+...+.|.|+|||||||+.+.|+...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 346789999999999999999998864
No 492
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.89 E-value=0.1 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 013289 143 VLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 143 ~LIllaG~~GSGKSTvAr~La~~ 165 (446)
.-|++.|++||||||+...|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 493
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.88 E-value=0.089 Score=46.49 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|++.|.+|+||||+...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999765
No 494
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.88 E-value=0.089 Score=46.83 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
+.=|+|.|.+|+||||+...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999765
No 495
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.88 E-value=0.088 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l 166 (446)
.++|.|++|+||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 88999999999999999988765
No 496
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.84 E-value=0.061 Score=56.76 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 013289 144 LLLMGGGMGAGKSTVLKDIMKES 166 (446)
Q Consensus 144 LIllaG~~GSGKSTvAr~La~~l 166 (446)
=+++.||||+|||++|+.++..+
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGB
T ss_pred eeEeecCchHHHHHHHHHHHHHH
Confidence 46789999999999999999875
No 497
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.81 E-value=0.095 Score=46.94 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 141 SPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 141 ~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
...-|++.|.+|+||||+...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456888999999999999999865
No 498
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.72 E-value=0.13 Score=47.00 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..+.-|++.|.+|+||||+...|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34577899999999999999998764
No 499
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.69 E-value=0.11 Score=51.94 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhhcccCCCCCeEEEeCcc
Q 013289 142 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 182 (446)
Q Consensus 142 P~LIllaG~~GSGKSTvAr~La~~l~~~~~~~~~vvIdaD~ 182 (446)
.++.+++|-.|+||||++..|+..+ +..+..+.+||+|.
T Consensus 144 kvIav~s~KGGvGKTT~a~nLA~~L--a~~g~rVlliD~D~ 182 (373)
T 3fkq_A 144 SVVIFTSPCGGVGTSTVAAACAIAH--ANMGKKVFYLNIEQ 182 (373)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHH--HHHTCCEEEEECCT
T ss_pred eEEEEECCCCCChHHHHHHHHHHHH--HhCCCCEEEEECCC
Confidence 3455666799999999998887764 22345789999993
No 500
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.61 E-value=0.13 Score=45.44 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 013289 140 RSPVLLLMGGGMGAGKSTVLKDIMKE 165 (446)
Q Consensus 140 ~~P~LIllaG~~GSGKSTvAr~La~~ 165 (446)
..+.=|++.|.+|+||||+...+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999865
Done!