BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013290
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GYG|A Chain A, Crystal Structure Of The Rio2 Kinase From Chaetomium
Thermophilum
Length = 397
Score = 288 bits (738), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 156/341 (45%), Positives = 208/341 (60%), Gaps = 59/341 (17%)
Query: 1 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHG--GTYKVLKNL--- 55
MKLD +R+L+ +D+RVLTAVEMG +NHEIVP+ L+ +IA L+ G G +K + L
Sbjct: 2 MKLDTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIARLRGGSSGVHKSIATLAKA 61
Query: 56 --------------------LRYKLLHHDSSK----SVGRQLGVGKESDIFEVAREDGTV 91
L Y LH +++ SVG ++GVGKESDI VA E G
Sbjct: 62 GLIARMKEAKYDGYRLTYGGLDYLALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQ 121
Query: 92 LAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAV 151
+K+HRLGR SFR VK+ RDYLR+R++ +W+YLSRLAA+KEFAFMKAL + GFPVP +
Sbjct: 122 KVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPI 181
Query: 152 DCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMI--- 208
+RH ++MSLV P+ QV+ + +P S++ +I L++RLA+HGLIH DFNEFNI+I
Sbjct: 182 AQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREE 241
Query: 209 ---DDDEKVTM----IDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQXXXXXXX 261
+D +T+ IDFPQMVS+ H NA+MYFDRDV+CI +FF +RFH
Sbjct: 242 KDAEDPSSITLTPIIIDFPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHF---------- 291
Query: 262 XXXXXXXXXXRLSFASISKTAG-----FLDKELAASGFTRK 297
+ KT G LD L ASGFT+K
Sbjct: 292 -----VSTTPGPFYKDAKKTVGKDGAKRLDAALEASGFTKK 327
>pdb|4GYI|A Chain A, Crystal Structure Of The Rio2
Kinase-AdpMG2+-Phosphoaspartate Complex From Chaetomium
Thermophilum
Length = 397
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/341 (45%), Positives = 207/341 (60%), Gaps = 59/341 (17%)
Query: 1 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHG--GTYKVLKNL--- 55
MKLD +R+L+ +D+RVLTAVEMG +NHEIVP+ L+ +IA L+ G G +K + L
Sbjct: 2 MKLDTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIARLRGGSSGVHKSIATLAKA 61
Query: 56 --------------------LRYKLLHHDSSK----SVGRQLGVGKESDIFEVAREDGTV 91
L Y LH +++ SVG ++GVGKESDI VA E G
Sbjct: 62 GLIARMKEAKYDGYRLTYGGLDYLALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQ 121
Query: 92 LAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAV 151
+K+HRLGR SFR VK+ RDYLR+R++ +W+YLSRLAA+KEFAFMKAL + GFPVP +
Sbjct: 122 KVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPI 181
Query: 152 DCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMI--- 208
+RH ++MSLV P+ QV+ + +P S++ +I L++RLA+HGLIH DFNEFNI+I
Sbjct: 182 AQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREE 241
Query: 209 ---DDDEKVTM----IDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQXXXXXXX 261
+D +T+ I FPQMVS+ H NA+MYFDRDV+CI +FF +RFH
Sbjct: 242 KDAEDPSSITLTPIIIXFPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHF---------- 291
Query: 262 XXXXXXXXXXRLSFASISKTAG-----FLDKELAASGFTRK 297
+ KT G LD L ASGFT+K
Sbjct: 292 -----VSTTPGPFYKDAKKTVGKDGAKRLDAALEASGFTKK 327
>pdb|1TQI|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase
pdb|1TQM|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Amppnp
pdb|1ZAO|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Atp And Manganese Ions
pdb|1ZAR|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Adp And Manganese Ions
Length = 282
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 128/265 (48%), Gaps = 34/265 (12%)
Query: 11 LSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNL--LR----------- 57
+ K +R++ A+ + ++E VP +L+ A + +LK L LR
Sbjct: 10 MGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEG 69
Query: 58 -------------YKLLHHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSF 104
++L+ ++G+ +G GKES +F E +K H++G TSF
Sbjct: 70 STFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSF 129
Query: 105 RAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQ 164
+ VK KRDY ++ L+ +A EF ++ L+ G VP + V+M L+
Sbjct: 130 KKVKEKRDY----GDLHFSVLAIRSARNEFRALQKLQ--GLAVPKVYAWEGNAVLMELID 183
Query: 165 GYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVS 224
L +V +++NPD V + I+ V + G++H D +++N+++ +E + +IDFPQ V
Sbjct: 184 AKELYRV-RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLV-SEEGIWIIDFPQSVE 241
Query: 225 VSHQNAQMYFDRDVECIFKFFRKRF 249
V + + +RDV I +F + +
Sbjct: 242 VGEEGWREILERDVRNIITYFSRTY 266
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 34/264 (12%)
Query: 12 SKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNL--LR------------ 57
K +R+ A+ + ++E VP +L+ A + +LK L LR
Sbjct: 11 GKHSWRIXDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEGS 70
Query: 58 ------------YKLLHHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFR 105
++L+ ++G+ G GKES +F E +K H++G TSF+
Sbjct: 71 TFTFIGLSLYSLHRLVRSGKVDAIGKLXGEGKESAVFNCYSEKFGECVVKFHKVGHTSFK 130
Query: 106 AVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQG 165
VK KRDY ++ L+ +A EF ++ L+ G VP + V+ L+
Sbjct: 131 KVKEKRDY----GDLHFSVLAIRSARNEFRALQKLQ--GLAVPKVYAWEGNAVLXELIDA 184
Query: 166 YPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSV 225
L +V +++NPD V + I+ V + G++H D +++N+++ +E + +IDFPQ V V
Sbjct: 185 KELYRV-RVENPDEVLDXILEEVAKFYHRGIVHGDLSQYNVLV-SEEGIWIIDFPQSVEV 242
Query: 226 SHQNAQMYFDRDVECIFKFFRKRF 249
+ + +RDV I +F + +
Sbjct: 243 GEEGWREILERDVRNIITYFSRTY 266
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 50 KVLKNLLRYKLLHHDSSKSVGRQLGVGKESDIFEV-AREDGTVLAM--KLHRLGRTSFRA 106
+ LK L YKL ++G + GKE+++F DG +AM K++R+ + F
Sbjct: 34 RTLKTL--YKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDK 91
Query: 107 VKSKRDYLRHRNSYNWLYLSR-----LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMS 161
+ +YL ++ +S + KEF ++ ++ G VP ++ ++M
Sbjct: 92 MD---EYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLME 148
Query: 162 LV-----QGYPLVQVN-QLQNPD--SVFETIIGLVVRLAEHG-LIHCDFNEFNIMIDDDE 212
+ LV++ +L+ D +F ++ V RL + L+H D +E+NIM D
Sbjct: 149 FIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID-- 206
Query: 213 KVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 247
KV ID Q V++ H A+ Y +RDV I +FF K
Sbjct: 207 KVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSK 241
>pdb|1ZP9|A Chain A, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|B Chain B, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|C Chain C, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|D Chain D, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZTF|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
pdb|1ZTH|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|B Chain B, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|C Chain C, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|D Chain D, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
Length = 258
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 30/218 (13%)
Query: 50 KVLKNLLRYKLLHHDSSKSVGRQLGVGKESDIFEVAREDGT------VLAMKLHRLGRTS 103
+ LK L YKL + G + GKE+++F DG A+K++R+ +
Sbjct: 34 RTLKTL--YKLSAKGYITAXGGVISTGKEANVFYA---DGVFDGKPVAXAVKIYRIETSE 88
Query: 104 FRAVKSKRDYLRHRNSYNWLYLSR-----LAALKEFAFMKALEDHGFPVPNAVDCNRHCV 158
F +YL ++ +S + KEF ++ ++ G VP ++ +
Sbjct: 89 F---DKXDEYLYGDERFDXRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYXKNVL 145
Query: 159 IMSLV-----QGYPLVQVN-QLQNPD--SVFETIIGLVVRLAEHG-LIHCDFNEFNIMID 209
+ + LV++ +L+ D +F ++ V RL + L+H D +E+NI
Sbjct: 146 LXEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIXYI 205
Query: 210 DDEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 247
D KV ID Q V++ H A+ Y +RDV I +FF K
Sbjct: 206 D--KVYFIDXGQAVTLRHPXAESYLERDVRNIIRFFSK 241
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 26/161 (16%)
Query: 69 VGRQLGVGKESDIFEVAREDGTVLAMKLHR-LGRTSFRA--VKSKRDYLR-HRNSYNWLY 124
+G LG G S++ +AR+ ++LHR + RA + YLR R + N
Sbjct: 16 LGEILGFGGMSEV-HLARD------LRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAA 68
Query: 125 LSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPL---VQVNQLQNPDSVF 181
L+ A + +A +A E P+P ++M V G L V P
Sbjct: 69 LNHPAIVAVYATGEA-ETPAGPLP--------YIVMEYVDGVTLRDIVHTEGPMTPKRAI 119
Query: 182 ETIIGLVVRLA---EHGLIHCDFNEFNIMIDDDEKVTMIDF 219
E I L ++G+IH D NIMI V ++DF
Sbjct: 120 EVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDF 160
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 154 NRHCVIMSLVQG----YPLVQVNQLQNPDSVF---ETIIGLVVRLAEHGLIHCDFNEFNI 206
+R +M V G Y + QV + + P +VF E IGL L G+I+ D N+
Sbjct: 415 DRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFF-LQSKGIIYRDLKLDNV 473
Query: 207 MIDDDEKVTMIDF 219
M+D + + + DF
Sbjct: 474 MLDSEGHIKIADF 486
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 154 NRHCVIMSLVQG----YPLVQVNQLQNPDSVF---ETIIGLVVRLAEHGLIHCDFNEFNI 206
+R +M V G Y + QV + + P +VF E IGL L G+I+ D N+
Sbjct: 94 DRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFF-LQSKGIIYRDLKLDNV 152
Query: 207 MIDDDEKVTMIDF 219
M+D + + + DF
Sbjct: 153 MLDSEGHIKIADF 165
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 154 NRHCVIMSLVQG----YPLVQVNQLQNPDSVF---ETIIGLVVRLAEHGLIHCDFNEFNI 206
+R +M V G Y + QV + + P +VF E IGL L + G+I+ D N+
Sbjct: 93 DRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFF-LHKRGIIYRDLKLDNV 151
Query: 207 MIDDDEKVTMIDF 219
M+D + + + DF
Sbjct: 152 MLDSEGHIKIADF 164
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 182 ETIIGLVVR----LAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRD 237
E I+G ++R L + G H D +N+M+D + +IDF +V+ + +
Sbjct: 342 EKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCS--WPTNL 399
Query: 238 VECIFKFFRKRFHLN 252
V+ F F + F N
Sbjct: 400 VQSFFVFVNELFAEN 414
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 182 ETIIGLVVR----LAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRD 237
E I+G ++R L + G H D +N+M+D + +IDF +V+ + +
Sbjct: 342 EKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCS--WPTNL 399
Query: 238 VECIFKFFRKRFHLN 252
V+ F F + F N
Sbjct: 400 VQSFFVFVNELFAEN 414
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 157 CVIMSLVQG----YPLVQVNQ----LQNPDSVFET--IIGLVVRLAEHGLIHCDFNEFNI 206
C++M+++ G Y + V++ Q P ++F T I+ + L + +I+ D N+
Sbjct: 261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENV 320
Query: 207 MIDDDEKVTMID 218
++DDD V + D
Sbjct: 321 LLDDDGNVRISD 332
>pdb|2W1Z|A Chain A, Rop2 From Toxoplasma Gondii: A Virulence Factor With A
Protein-Kinase Fold And No Enzymatic Activity.
pdb|2W1Z|B Chain B, Rop2 From Toxoplasma Gondii: A Virulence Factor With A
Protein-Kinase Fold And No Enzymatic Activity
Length = 368
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 184 IIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMV 223
+I L L +GL+H DF NI++D V + F +V
Sbjct: 200 LIRLAASLQHYGLVHADFQVRNILLDQRGGVFLTGFEHLV 239
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 157 CVIMSLVQG----YPLVQVNQ----LQNPDSVFET--IIGLVVRLAEHGLIHCDFNEFNI 206
C++M+++ G Y + V++ Q P ++F T I+ + L + +I+ D N+
Sbjct: 261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENV 320
Query: 207 MIDDDEKVTMID 218
++DDD V + D
Sbjct: 321 LLDDDGNVRISD 332
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 157 CVIMSLVQG----YPLVQVNQ----LQNPDSVFET--IIGLVVRLAEHGLIHCDFNEFNI 206
C++M+++ G Y + V++ Q P ++F T I+ + L + +I+ D N+
Sbjct: 261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENV 320
Query: 207 MIDDDEKVTMID 218
++DDD V + D
Sbjct: 321 LLDDDGNVRISD 332
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 182 ETIIGLVVR----LAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSH 227
E I+G ++R L + G H D +N+M+D + +IDF +V+
Sbjct: 342 EKILGSLLRSLAALEKKGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ 391
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 157 CVIMSLVQG----YPLVQVNQ----LQNPDSVFET--IIGLVVRLAEHGLIHCDFNEFNI 206
C++M+++ G Y + V++ Q P ++F T I+ + L + +I+ D N+
Sbjct: 261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENV 320
Query: 207 MIDDDEKVTMID 218
++DDD V + D
Sbjct: 321 LLDDDGNVRISD 332
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 201 FNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVE---CIFKFFRKRFHLNFQ 254
F+E N M+D+ K ++D P+M+ DR +E + K + FH+ F+
Sbjct: 285 FDELNQMLDNMRKAGLVDIPKMIQ------DWLVDRSIEKFPLMAKIYSWSFHVGFR 335
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 201 FNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVE---CIFKFFRKRFHLNFQ 254
F+E N M+D+ K ++D P+M+ DR +E + K + FH+ F+
Sbjct: 285 FDELNQMLDNMRKAGLVDIPKMIQ------DWLVDRSIEKFPLMAKIYSWSFHVGFR 335
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 201 FNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVE---CIFKFFRKRFHLNFQ 254
F+E N M+D+ K ++D P+M+ DR +E + K + FH+ F+
Sbjct: 291 FDELNQMLDNMRKAGLVDIPKMIQ------DWLVDRSIEKFPLMAKIYSWSFHVGFR 341
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 180 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++GL V L E G++H D + NI++ D+ +T+ DF
Sbjct: 140 MYHILLGLHV-LHEAGVVHRDLHPGNILLADNNDITICDF 178
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 180 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++GL V L E G++H D + NI++ D+ +T+ DF
Sbjct: 140 MYHILLGLHV-LHEAGVVHRDLHPGNILLADNNDITICDF 178
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 68 SVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR 127
S+ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 12 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN--------------- 56
Query: 128 LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV------ 180
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 57 -----EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERK 111
Query: 181 --FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 112 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 151
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 68 SVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR 127
S+ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 59 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN--------------- 103
Query: 128 LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV------ 180
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 104 -----EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERK 158
Query: 181 --FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 159 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 198
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 68 SVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR 127
S+ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 59 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN--------------- 103
Query: 128 LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV------ 180
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 104 -----EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERK 158
Query: 181 --FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 159 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 198
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 68 SVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR 127
S+ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 31 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN--------------- 75
Query: 128 LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV------ 180
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 76 -----EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERK 130
Query: 181 --FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 131 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 170
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 68 SVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR 127
S+ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 31 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN--------------- 75
Query: 128 LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV------ 180
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 76 -----EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERK 130
Query: 181 --FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 131 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 170
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 68 SVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR 127
S+ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 59 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN--------------- 103
Query: 128 LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV------ 180
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 104 -----EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERK 158
Query: 181 --FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 159 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 198
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 68 SVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR 127
S+ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 15 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN--------------- 59
Query: 128 LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV------ 180
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 60 -----EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERK 114
Query: 181 --FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 115 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 154
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 180 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
VF I+ V + G H D N++ D+ K+ +IDF
Sbjct: 113 VFRQIVSAVAYVHSQGYAHRDLKPENLLFDEYHKLKLIDF 152
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 180 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
+F I+ + + G+IH D NI ID+ V + DF
Sbjct: 121 LFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDF 160
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 180 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
+F I+ + + G+IH D NI ID+ V + DF
Sbjct: 121 LFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDF 160
>pdb|2JCH|A Chain A, Structural And Mechanistic Basis Of Penicillin Binding
Protein Inhibition By Lactivicins
Length = 461
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 83 EVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFA---FMKA 139
E+ DGTV+A + T A + DYL R++ + AA ++F K
Sbjct: 2 EITYSDGTVIASIDYLYFTTLAEAQERMYDYLAQRDNVS-------AATQKFYRDLAAKE 54
Query: 140 LEDHGFPVPNAVDCNRHCVIMSLVQGY 166
+E+ G+ + +D H + S V Y
Sbjct: 55 IENGGYKITTTIDQKIHSAMQSAVADY 81
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 68 SVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR 127
S+ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 11 SILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN--------------- 55
Query: 128 LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV------ 180
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 56 -----EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERK 110
Query: 181 --FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 111 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,530,338
Number of Sequences: 62578
Number of extensions: 389748
Number of successful extensions: 1414
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 50
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)