BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013290
(446 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54T05|RIO2_DICDI Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum
GN=rio2 PE=3 SV=1
Length = 522
Score = 341 bits (875), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 167/322 (51%), Positives = 215/322 (66%), Gaps = 43/322 (13%)
Query: 1 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKL 60
MKLD LRYLSKDDFR L AVEMGM+NHE+VP L+ IA+LK+GGT K ++ L ++KL
Sbjct: 1 MKLDPKALRYLSKDDFRTLVAVEMGMKNHELVPVSLICTIANLKYGGTKKSIQTLHKFKL 60
Query: 61 LHHDS--------------------------SKSVGRQLGVGKESDIFEVAREDGTVLAM 94
L HD VG Q+GVGKESDI+ VA +D + +
Sbjct: 61 LFHDGRNYDGYKLTYLGYDFLALKTLVSRGVCSYVGNQIGVGKESDIYIVANDDNQEMVL 120
Query: 95 KLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCN 154
KLHRLGR SF+ +K+ RDYL+HR S +WLYLSRLAALKEFA+MKAL ++GFPVP +D N
Sbjct: 121 KLHRLGRVSFKTIKNNRDYLKHRKSASWLYLSRLAALKEFAYMKALYENGFPVPTPIDYN 180
Query: 155 RHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 214
RHC++MS +GYPL Q+ QL++P V+ ++ L+V+LA +GLIH DFNEFNI+I+D+E++
Sbjct: 181 RHCIVMSRARGYPLTQIVQLRHPSKVYSDLMNLIVKLASYGLIHGDFNEFNILINDEEEI 240
Query: 215 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTDEGSRLS 274
T+IDFPQMVS SH NA+MYFDRDV CI FF KRF+ + D +I +
Sbjct: 241 TLIDFPQMVSTSHLNAEMYFDRDVTCIRVFFEKRFNFIGERWPKFKDCQNIHS------- 293
Query: 275 FASISKTAGFLDKELAASGFTR 296
LD E++ASGFTR
Sbjct: 294 ----------LDVEISASGFTR 305
>sp|Q9CQS5|RIOK2_MOUSE Serine/threonine-protein kinase RIO2 OS=Mus musculus GN=Riok2 PE=1
SV=1
Length = 547
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/325 (51%), Positives = 222/325 (68%), Gaps = 44/325 (13%)
Query: 2 KLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLL 61
K++V LRY+S+DDFRVLTAVEMGM+NHEIVP L+ IASLKHGG K+L+ L+++KL+
Sbjct: 3 KVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPCSLIASIASLKHGGCNKILRELVKHKLI 62
Query: 62 HHDSSK---------------------------SVGRQLGVGKESDIFEVAREDGTVLAM 94
+ +K SVG Q+GVGKESDI+ VA E G LA+
Sbjct: 63 AWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEAGQQLAL 122
Query: 95 KLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCN 154
KLHRLGRTSFR +K+KRDY +HR++ +WLYLSRL+A+KEFA+MKAL + FPVP +D N
Sbjct: 123 KLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYN 182
Query: 155 RHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 214
RH VIM L+ GYPL Q++ +++P SV++ + L+V+L HGLIH DFNEFN+M+D D+ +
Sbjct: 183 RHAVIMELINGYPLCQIHHVEDPASVYDEAMELIVKLGNHGLIHGDFNEFNLMLDKDDHI 242
Query: 215 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTDEGSRLS 274
TMIDFPQMVS SH NA+ YFDRDV+CI +FF KRF E+ SDI ++
Sbjct: 243 TMIDFPQMVSTSHPNAEWYFDRDVKCIREFFMKRFSY---ESELYPTFSDIRKEDS---- 295
Query: 275 FASISKTAGFLDKELAASGFTRKDQ 299
LD E++ASG+T++ Q
Sbjct: 296 ----------LDVEVSASGYTKEMQ 310
>sp|Q9BVS4|RIOK2_HUMAN Serine/threonine-protein kinase RIO2 OS=Homo sapiens GN=RIOK2 PE=1
SV=2
Length = 552
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 165/325 (50%), Positives = 219/325 (67%), Gaps = 44/325 (13%)
Query: 2 KLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLL 61
K++V LRY+S+DDFRVLTAVEMGM+NHEIVP L+ IASLKHGG KVL+ L+++KL+
Sbjct: 3 KVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHKLI 62
Query: 62 HHDSSK---------------------------SVGRQLGVGKESDIFEVAREDGTVLAM 94
+ +K SVG Q+GVGKESDI+ VA E+G A+
Sbjct: 63 AWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQFAL 122
Query: 95 KLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCN 154
KLHRLGRTSFR +K+KRDY +HR++ +WLYLSRL+A+KEFA+MKAL + FPVP +D N
Sbjct: 123 KLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYN 182
Query: 155 RHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 214
RH V+M L+ GYPL Q++ +++P SV++ + L+V+LA HGLIH DFNEFN+++D+ + +
Sbjct: 183 RHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESDHI 242
Query: 215 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTDEGSRLS 274
TMIDFPQMVS SH NA+ YFDRDV+CI FF KRF + D DT
Sbjct: 243 TMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDT------- 295
Query: 275 FASISKTAGFLDKELAASGFTRKDQ 299
LD E++ASG+T++ Q
Sbjct: 296 ----------LDVEVSASGYTKEMQ 310
>sp|Q9P7W5|RIO2_SCHPO Serine/threonine-protein kinase rio2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rio2 PE=3 SV=2
Length = 344
Score = 288 bits (736), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 144/330 (43%), Positives = 203/330 (61%), Gaps = 42/330 (12%)
Query: 3 LDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLL- 61
L++ +RYLS +DFR LTAVEMG RNHE+VP+ ++++IA ++ G K L L +KL+
Sbjct: 4 LNIKAMRYLSAEDFRTLTAVEMGSRNHEVVPTNMINQIAKIRGGSCTKSLSVLFMHKLIA 63
Query: 62 --------------------------HHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMK 95
S SVG Q+GVGKESD++ V + G +K
Sbjct: 64 KVPHISYEGYRLTYAGYDYLALKALSKRASVYSVGNQIGVGKESDVYVVGDQKGKQYILK 123
Query: 96 LHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNR 155
+HRLGR SFR+VK+ RDYLR+R + +W YLSRLAA KEFAFMK L +HGFPVP +D +R
Sbjct: 124 IHRLGRISFRSVKNNRDYLRNRKTGSWQYLSRLAATKEFAFMKILHEHGFPVPAPIDHSR 183
Query: 156 HCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVT 215
HC+IM ++ +PL V +++P ++++T++ ++VR A +GLIH DFNEFNI++ +D
Sbjct: 184 HCIIMEMIDAFPLRAVTDIRDPPALYQTLMDIIVRFARNGLIHGDFNEFNIIVREDGTAV 243
Query: 216 MIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTDEGSRLSF 275
+IDFPQMVS SH +AQ YFDRDV+CI ++F K N+Q D + DI E
Sbjct: 244 VIDFPQMVSTSHPDAQFYFDRDVQCIVQYFEK----NYQYKGDVPNFEDISKMEKE---- 295
Query: 276 ASISKTAGFLDKELAASGFTRKDQDVIQKF 305
LD + ASGF +K ++K+
Sbjct: 296 -------NNLDIMIEASGFNKKQSKELEKY 318
>sp|P40160|RIO2_YEAST Serine/threonine-protein kinase RIO2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RIO2 PE=1 SV=1
Length = 425
Score = 257 bits (657), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 159/416 (38%), Positives = 236/416 (56%), Gaps = 56/416 (13%)
Query: 1 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLK-HGGTYKVLKNLLR-- 57
MKLD +RYL+ DDFRVL AVE G R+HE+VP+ L+H+I+ ++ GT + + +L +
Sbjct: 1 MKLDTSHMRYLTTDDFRVLQAVEQGSRSHEVVPTPLIHQISGMRSQSGTNRAISDLAKLS 60
Query: 58 ------------YKL-------------LHHDSSKSVGRQLGVGKESDIFEVAREDGTVL 92
Y+L L+ D+ SVG +GVGKESDI++V+ ++G
Sbjct: 61 LISKMRNVKYDGYRLTYNGIDYLALKTMLNRDTVYSVGNTIGVGKESDIYKVSDKNGNPR 120
Query: 93 AMKLHRLGRTSFRAVKSKRDYLRHRNS-YNWLYLSRLAALKEFAFMKALEDHGFPVPNAV 151
MK+HRLGRTSF +V++ RDYL+ N NW++LSRLAA KE+ FM L GF VP
Sbjct: 121 VMKIHRLGRTSFHSVRNNRDYLKKSNQGANWMHLSRLAANKEYQFMSMLYSKGFKVPEPF 180
Query: 152 DCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDD- 210
D +RH V+M L++GYP+ ++ + +N ++ ++ +V LA GLIHCDFNEFNIMI D
Sbjct: 181 DNSRHIVVMELIEGYPMRRLRKHKNIPKLYSDLMCFIVDLANSGLIHCDFNEFNIMIKDK 240
Query: 211 -----DEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDI 265
D +IDFPQ +S+ HQ+A YF RDV+CI +FF+K+ L ++ D S +
Sbjct: 241 LEDENDCGFVVIDFPQCISIQHQDADYYFQRDVDCIRRFFKKK--LKYEPKP---DSSML 295
Query: 266 DTD---EGSRLSFASIS---KTAGFLDKELAASGFTRKDQDVIQKFIGGSIEE-----SG 314
DT+ +G + ++ K LD+ + ASGF++K + + ++E
Sbjct: 296 DTEGFGDGYKYAYPDFKRDVKRTDNLDELVQASGFSKKHPG--DRGLETAVESMRNAVYN 353
Query: 315 SDDEGSDDGNESETNETNVDGLDSLHLAEQDVIHKNPDLNSKKEGVSEENQQNSEA 370
SDD+ S+D E E E + D + +E D D +E EEN++ EA
Sbjct: 354 SDDDMSNDEAEEENGEGDYSEEDEYYDSELDNESSEDDSEDAQE---EENERIIEA 406
>sp|Q58473|RIO2_METJA RIO-type serine/threonine-protein kinase Rio2 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio2 PE=3 SV=1
Length = 270
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 127/253 (50%), Gaps = 35/253 (13%)
Query: 26 MRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSS------------------- 66
MR+HE VP + + R A + LK L ++ + +
Sbjct: 1 MRHHEWVPLDEIVRKAKMPEKDVLYRLKRLNKFGFVVRSTYGYAVSMGGYDALAINAFVK 60
Query: 67 ----KSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNW 122
K++G +LGVGKE D++ V DG +K H+ GRT F K R YL ++ +W
Sbjct: 61 KGILKAIGNKLGVGKEGDVYTVLLSDGREAVLKFHKHGRTCFTRGKRYRGYLADKHHISW 120
Query: 123 LYLSRLAALKEFAFMKALEDHGFP---VPNAVDCNRHCVIMSLVQGYPL--VQVNQLQNP 177
LY+SRL A +EF + L FP VP ++ NRH +IM V G L + +++ +
Sbjct: 121 LYVSRLTAEREFEILNEL----FPIVKVPEPIEWNRHAIIMGKVVGEELKRLDLSEFMSK 176
Query: 178 DSV---FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYF 234
+ + F II V + E G IH D +EFNI++D++ +ID+PQ V H +A+ Y
Sbjct: 177 EEIKDLFWKIIEEVKKAYEIGYIHGDLSEFNILLDENGDFVIIDWPQAVPKYHPDAEFYL 236
Query: 235 DRDVECIFKFFRK 247
RD+ + ++F+K
Sbjct: 237 KRDIWNVIRYFKK 249
>sp|O30245|RIO2_ARCFU RIO-type serine/threonine-protein kinase Rio2 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rio2 PE=1 SV=1
Length = 282
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 134/282 (47%), Gaps = 40/282 (14%)
Query: 11 LSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNL--LR----------- 57
+ K +R++ A+ + ++E VP +L+ A + +LK L LR
Sbjct: 10 MGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEG 69
Query: 58 -------------YKLLHHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSF 104
++L+ ++G+ +G GKES +F E +K H++G TSF
Sbjct: 70 STFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSF 129
Query: 105 RAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQ 164
+ VK KRDY ++ L+ +A EF ++ L+ G VP + V+M L+
Sbjct: 130 KKVKEKRDY----GDLHFSVLAIRSARNEFRALQKLQ--GLAVPKVYAWEGNAVLMELID 183
Query: 165 GYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVS 224
L +V +++NPD V + I+ V + G++H D +++N+++ +E + +IDFPQ V
Sbjct: 184 AKELYRV-RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLV-SEEGIWIIDFPQSVE 241
Query: 225 VSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDID 266
V + + +RDV I +F + + T+ D S ID
Sbjct: 242 VGEEGWREILERDVRNIITYFSRTYR------TEKDINSAID 277
>sp|P34649|YOT3_CAEEL Putative RIO-type serine/threonine-protein kinase 3
OS=Caenorhabditis elegans GN=riok-3 PE=3 SV=1
Length = 510
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 55 LLRYKLLHHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYL 114
LL K ++ SV + GKES + A++ T A+K+++ T+ K++ +Y+
Sbjct: 235 LLLLKWINQGVFDSVDGIIATGKESAVLHAAQDSATSYAIKVYK---TTLSEFKNRSEYV 291
Query: 115 ----RHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV--QGYPL 168
R +N L ++ A +EF + + HG P P V R+ ++MS + QG
Sbjct: 292 KDDFRFKNPRGVL---KIWAEREFMNLSRMAKHGLPCPQPVKVRRNVLVMSFLGDQGLAA 348
Query: 169 VQVNQLQ-------NPDSVFETIIGLVVRL-AEHGLIHCDFNEFNIMIDDDEKVTMIDFP 220
++ ++ +V++ + ++ R+ E L+H D +EFN+++ D KV +ID
Sbjct: 349 PRLKNVEWEFFTDDERRNVYDQVQSIMCRMYKECLLVHADLSEFNLLLTPDNKVHVIDVS 408
Query: 221 QMVSVSHQNAQMYFDRDVECIFKFFRK 247
Q + +SH + + RD++ I FF +
Sbjct: 409 QAMDLSHPRSLQFLTRDIQNIITFFTR 435
>sp|O42650|RIO1_SCHPO Serine/threonine-protein kinase rio1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rio1 PE=3 SV=2
Length = 497
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 19/208 (9%)
Query: 55 LLRYKLLHHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYL 114
++ KL+++ + + + GKE++++ EDG A+K++ +TS K + Y+
Sbjct: 108 MILLKLINNGTISEINGCISTGKEANVYHATNEDGKHFAIKIY---KTSILVFKDRDRYV 164
Query: 115 ----RHRNSY---NWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV---- 163
R R+ Y N + RL A KE +K + G P P + +H ++MS +
Sbjct: 165 SGEFRFRHGYNKRNPRKMVRLWAEKEIRNLKRVAAAGIPCPEPILLKQHVLLMSFLGDKK 224
Query: 164 -QGYP-LVQVNQLQNPDSVFETIIGLVVRLAEH--GLIHCDFNEFNIMIDDDEKVTMIDF 219
YP L ++ + ++ +R+ H L+H D +E+N++ KV ID
Sbjct: 225 GWAYPKLKDIDMTPGEATKLYQLVARNMRILFHVCHLVHADLSEYNLLYHKG-KVYFIDV 283
Query: 220 PQMVSVSHQNAQMYFDRDVECIFKFFRK 247
Q V H + + D+ I FFR+
Sbjct: 284 SQSVEHDHPQSIDFLRMDILNISTFFRR 311
>sp|Q9DBU3|RIOK3_MOUSE Serine/threonine-protein kinase RIO3 OS=Mus musculus GN=Riok3 PE=2
SV=3
Length = 519
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 28/240 (11%)
Query: 55 LLRYKLLHHDSSKSVGRQLGVGKESDIF-------EVAREDGTVLAMKLH-RLGRTSFRA 106
LL YK+++ +++ + GKES +F E +EDG + + ++ +T+
Sbjct: 239 LLMYKMVNSGMLETITGCISTGKESVVFHAYGGSLEDEKEDGKAIPTECAIKVFKTTLNE 298
Query: 107 VKSKRDYL----RHRNSYNWL---YLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVI 159
K++ Y+ R ++ ++ L + R+ A KE + ++ G P P V +H ++
Sbjct: 299 FKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLTRMQKAGIPCPTVVLLKKHILV 358
Query: 160 MSLVQGYPLVQVNQLQN--------PDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDD 211
MS + G+ V +L+ D+ ++T+ + E L+H D +E+N M+
Sbjct: 359 MSFI-GHDQVPAPKLKEVKLSNEEMKDAYYQTLHLMQQLYNECTLVHADLSEYN-MLWHA 416
Query: 212 EKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK---RFHLNFQETTDGDDGSDIDTD 268
KV +ID Q V +H + + RD + +FF+K LN +E + G +I D
Sbjct: 417 GKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVTEALNERELFNAVSGLNISAD 476
>sp|O28471|RIO1_ARCFU RIO-type serine/threonine-protein kinase Rio1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rio1 PE=1 SV=1
Length = 258
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 50 KVLKNLLRYKLLHHDSSKSVGRQLGVGKESDIFEV-AREDGTVLAM--KLHRLGRTSFRA 106
+ LK L YKL ++G + GKE+++F DG +AM K++R+ + F
Sbjct: 34 RTLKTL--YKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDK 91
Query: 107 VKSKRDYLRHRNSYNWLYLSR-----LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMS 161
+ +YL ++ +S + KEF ++ ++ G VP ++ ++M
Sbjct: 92 MD---EYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLME 148
Query: 162 LV-----QGYPLVQVN-QLQNPD--SVFETIIGLVVRLAEHG-LIHCDFNEFNIMIDDDE 212
+ LV++ +L+ D +F ++ V RL + L+H D +E+NIM D
Sbjct: 149 FIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID-- 206
Query: 213 KVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 247
KV ID Q V++ H A+ Y +RDV I +FF K
Sbjct: 207 KVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSK 241
>sp|Q1RMT7|RIOK3_BOVIN Serine/threonine-protein kinase RIO3 OS=Bos taurus GN=RIOK3 PE=2
SV=1
Length = 519
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 55 LLRYKLLHHDSSKSVGRQLGVGKESDIF-------EVAREDGTVLAMKLH-RLGRTSFRA 106
LL YK+++ +++ + GKES +F E +ED V+ + ++ +T+
Sbjct: 239 LLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDGKEDSKVIPTECAIKVFKTTLNE 298
Query: 107 VKSKRDYL----RHRNSYNWL---YLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVI 159
K++ Y+ R ++ ++ L + R+ A KE + ++ G P P V +H ++
Sbjct: 299 FKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLTRMQRAGIPCPTVVLLKKHILV 358
Query: 160 MSLVQGYPLVQVNQLQN--------PDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDD 211
MS + G+ V +L+ D+ ++T+ + E L+H D +E+N M+
Sbjct: 359 MSFI-GHDQVPAPKLKEVKLSSEEMKDAYYQTLHLMQQLYDECTLVHADLSEYN-MLWHA 416
Query: 212 EKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 247
KV +ID Q V +H + + RD + +FF+K
Sbjct: 417 GKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQK 452
>sp|O14730|RIOK3_HUMAN Serine/threonine-protein kinase RIO3 OS=Homo sapiens GN=RIOK3 PE=1
SV=2
Length = 519
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 23/215 (10%)
Query: 55 LLRYKLLHHDSSKSVGRQLGVGKESDIF-------EVAREDGTVLAMKLH-RLGRTSFRA 106
LL YK+++ +++ + GKES +F E +ED V+ + ++ +T+
Sbjct: 239 LLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTECAIKVFKTTLNE 298
Query: 107 VKSKRDYL----RHRNSYNWL---YLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVI 159
K++ Y+ R ++ ++ L + R+ A KE + ++ G P P V +H ++
Sbjct: 299 FKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILV 358
Query: 160 MSLV--QGYPL-----VQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDE 212
MS + P V++N + ++ ++T+ + E L+H D +E+N M+
Sbjct: 359 MSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYN-MLWHAG 417
Query: 213 KVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 247
KV +ID Q V +H + + RD + +FF+K
Sbjct: 418 KVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQK 452
>sp|Q922Q2|RIOK1_MOUSE Serine/threonine-protein kinase RIO1 OS=Mus musculus GN=Riok1 PE=2
SV=2
Length = 567
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 18/207 (8%)
Query: 55 LLRYKLLHHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYL 114
++ +KLLH D + + GKE++++ + G A+K++ +TS K + Y+
Sbjct: 167 MILFKLLHKDHISEIHGCISTGKEANVYYASTPSGESRAIKIY---KTSILMFKDRDKYV 223
Query: 115 ----RHRNSY---NWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV---- 163
R R Y N + R A KE + L+ P P + H ++M +
Sbjct: 224 TGEFRFRRGYCKGNPRKMVRTWAEKEMRNLCRLKTANIPCPEPIRLRSHVLLMGFIGKDD 283
Query: 164 QGYPLVQVNQLQNPDS--VFETIIGLVVRLAEHG-LIHCDFNEFNIMIDDDEKVTMIDFP 220
PL++ QL + ++ +I + ++ + L+H D +EFN++ + V +ID
Sbjct: 284 MPAPLLKNVQLSESKARELYLQVIQYMRKMYQDARLVHADLSEFNMLYHGGD-VYIIDVS 342
Query: 221 QMVSVSHQNAQMYFDRDVECIFKFFRK 247
Q V H +A + +D + FF K
Sbjct: 343 QSVEHDHPHALEFLRKDCTNVNDFFSK 369
>sp|Q57886|RIO1_METJA RIO-type serine/threonine-protein kinase Rio1 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio1 PE=3 SV=1
Length = 290
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 65 SSKSVGRQLGV---GKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYN 121
+ K + +G+ GKE+ +F+ AR+ A+K++R+ F K+ Y++ ++
Sbjct: 71 AGKHLTEYIGIVNSGKEAVVFK-ARKGKFYRAVKVYRVATCDF---KTMSKYIQGDPRFH 126
Query: 122 WLYLSRLAAL-----KEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV--QGYPLVQVNQL 174
SR + KEF ++ + P A + ++M V +G P ++ +
Sbjct: 127 LRKSSRRQIIHAWVEKEFRNLRRASE-IINAPKARLRRENVLVMDFVGYRGIPAPKLKDM 185
Query: 175 QNPD--SVFETIIGLVVRLAEHG-LIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQ 231
Q+ D F+ I + +L E G L+H D +E+NI++ DDE V IDF Q V H A
Sbjct: 186 QDLDWEKYFKIIKESMKKLYEEGELVHGDLSEYNILVKDDEPV-FIDFSQSVITQHPLAH 244
Query: 232 MYFDRDVECIFKFF-RKRFHLNFQETTDGDDGSDIDT 267
RD I FF RKR N+++ G +ID
Sbjct: 245 PLLIRDCINICNFFRRKRVDCNYKDLYKYITGKEIDP 281
>sp|Q03021|RIO1_THEAC RIO-type serine/threonine-protein kinase Rio1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=rio1 PE=3 SV=1
Length = 186
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 92 LAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSR-----LAALKEFAFMKALEDHGFP 146
+A+K+ ++ F ++ R Y+ ++ + + R + KE+ + ALE+ P
Sbjct: 12 VAVKIFKMSTLKFMSI---RKYIEGDQRFSKIRIDRNDIVPVWVRKEYTNLMALENAHVP 68
Query: 147 VPNAVDCNRHCVIMSLV--QGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEF 204
P + ++ ++MS + + P Q+ ++ + +++ +I + R+ + ++H D +E+
Sbjct: 69 APKPIGFFKNILVMSYIGTKSGPAPQLKDVEIDEGIYDQVIDGMRRMYANRIVHADLSEY 128
Query: 205 NIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 247
N++ KV ID Q V + H A + +RD+ + FF+K
Sbjct: 129 NMLFH--RKVYFIDLAQAVDMDHPMAAEFLERDIVNVSNFFQK 169
>sp|Q8SVI7|RIO1_ENCCU Probable serine/threonine-protein kinase RIO1 homolog
OS=Encephalitozoon cuniculi (strain GB-M1) GN=RIO1 PE=3
SV=1
Length = 409
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 40/233 (17%)
Query: 48 TYKVLKNL-LRYKLLHHDSSKSVGRQLGVGKESDIF---------------------EVA 85
T KVL+ L R KL++ S L GKES+++ E
Sbjct: 49 TLKVLERLQARGKLVNLQGS------LCTGKESNVYLGEASTSLCSKFIKNRYSVTEEPG 102
Query: 86 REDGTV-LAMKLHRLGRTSFR----AVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKAL 140
RE V + +K+ + SFR ++S++ + R S N L ++ A KE +K L
Sbjct: 103 REGQIVPVVVKIFKTSIMSFRDRERYIRSEKRFQRFCTS-NSRKLIKVWAEKEVRNLKRL 161
Query: 141 EDHGFPVPNAVDCNRHCVIMSLV----QGYPLVQVNQLQNPDSVFETIIGLVVRL-AEHG 195
+ G P P + + ++M+ + + P ++ +++ + ++ + ++ + + G
Sbjct: 162 NNAGIPSPEPIYLKNNILVMTQIGRCSEVAPRLRDASIKDLEGCYQQCVKIIRDMYKKAG 221
Query: 196 LIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKR 248
L+H D +EFN++ + V +ID Q V + H NAQ + D+ I FF ++
Sbjct: 222 LVHADLSEFNLLYFEGV-VYVIDVGQSVEIDHDNAQRFLIMDINNINSFFSRK 273
>sp|Q9BRS2|RIOK1_HUMAN Serine/threonine-protein kinase RIO1 OS=Homo sapiens GN=RIOK1 PE=1
SV=2
Length = 568
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 18/205 (8%)
Query: 55 LLRYKLLHHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYL 114
++ +K+L + + GKE++++ + +G A+K++ +TS K + Y+
Sbjct: 168 MILFKMLTRGIITEINGCISTGKEANVYHASTANGESRAIKIY---KTSILVFKDRDKYV 224
Query: 115 ----RHRNSY---NWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV---- 163
R R+ Y N + + A KE + L P P + H ++MS +
Sbjct: 225 SGEFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDD 284
Query: 164 QGYPLVQVNQLQNPDS--VFETIIGLVVRLAEHG-LIHCDFNEFNIMIDDDEKVTMIDFP 220
PL++ QL + ++ +I + R+ + L+H D +EFN M+ V +ID
Sbjct: 285 MPAPLLKNVQLSESKARELYLQVIQYMRRMYQDARLVHADLSEFN-MLYHGGGVYIIDVS 343
Query: 221 QMVSVSHQNAQMYFDRDVECIFKFF 245
Q V H +A + +D + FF
Sbjct: 344 QSVEHDHPHALEFLRKDCANVNDFF 368
>sp|Q12196|RIO1_YEAST Serine/threonine-protein kinase RIO1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RIO1 PE=1 SV=1
Length = 484
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 19/196 (9%)
Query: 69 VGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYL----RHRNS---YN 121
G+ + +E+ +EV DG+ + ++ +TS K + Y+ R RNS +N
Sbjct: 97 TGKAPVIDEETGQYEVLETDGSRAEYAI-KIYKTSILVFKDRERYVDGEFRFRNSRSQHN 155
Query: 122 WLYLSRLAALKEFAFMKALEDHG-FPVPNAVDCNRHCVIMSLVQ---GY--PLVQVNQLQ 175
+ ++ A KEF +K + G P P ++ + ++M + G+ P ++ +
Sbjct: 156 PRKMIKIWAEKEFRNLKRIYQSGVIPAPKPIEVKNNVLVMEFLSRGNGFASPKLKDYPYK 215
Query: 176 NPDSVFE---TIIGLVVRLAEHG-LIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQ 231
N D +F T++ + L + L+H D +E+N ++ DD K+ MID Q V H +
Sbjct: 216 NRDEIFHYYHTMVAYMRLLYQVCRLVHADLSEYNTIVHDD-KLYMIDVSQSVEPEHPMSL 274
Query: 232 MYFDRDVECIFKFFRK 247
+ D++ + +F K
Sbjct: 275 DFLRMDIKNVNLYFEK 290
>sp|Q54VD8|RIO1_DICDI Serine/threonine-protein kinase rio1 OS=Dictyostelium discoideum
GN=rio1 PE=3 SV=1
Length = 574
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 93/205 (45%), Gaps = 12/205 (5%)
Query: 55 LLRYKLLHHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSF----RAVKSK 110
L+ +K+++ + + + GKE++++ + A+K+++ F R V +
Sbjct: 171 LMLFKMINKGAFSEINGCISTGKEANVYHAFTPNEEERAVKVYKTSILVFKDRDRYVTGE 230
Query: 111 RDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV--QGYPL 168
+ R + +N + ++ A KEF + L++ G P P + H ++M+ + GY
Sbjct: 231 FRFRRGYSKHNPRKMVKVWAEKEFRNLTRLKNAGIPCPTPLILRNHILVMTFIGKDGYAA 290
Query: 169 VQVNQLQNPDSVFETIIGLVVRLA-----EHGLIHCDFNEFNIMIDDDEKVTMIDFPQMV 223
++ F I +++ + L+H D +E+N++ ++ + +ID Q V
Sbjct: 291 PRLKDATVSQEKFGVIYLDCIKMMRTLFHKCRLVHADLSEYNMLYYKNQ-LYIIDVSQSV 349
Query: 224 SVSHQNAQMYFDRDVECIFKFFRKR 248
H ++ + D + FFRK+
Sbjct: 350 EHDHPHSLDFLRMDCSNVTDFFRKK 374
>sp|B0U358|KDKA_XYLFM 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain M12) GN=kdkA PE=3 SV=1
Length = 249
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 117 RNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQN 176
R+ Y W R ++ EF M+ L G PVP + C + VQ + + +L+
Sbjct: 83 RDRYFWCGGHRTRSVLEFRLMRELISRGLPVPTPLAA---CYVRYGVQYRAAILIERLEG 139
Query: 177 PDSV------------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
S+ +E I ++ R GL H D N NI++D + +IDF
Sbjct: 140 VSSLAMCIRGNSKETHWEQIGRMISRFHREGLDHADLNAHNILLDPAGQCWLIDF 194
>sp|Q5H410|KDKA_XANOR 3-deoxy-D-manno-octulosonic acid kinase OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=kdkA PE=3 SV=1
Length = 249
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 26/174 (14%)
Query: 111 RDYLR-------HRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDC--------NR 155
R YLR R+ Y W R + EF M+ L PVP + R
Sbjct: 70 RQYLRGGMAARVSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYR 129
Query: 156 HCVIMSLVQGY-PLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 214
++M ++ L QL + +E L+ R GL H D N NI+ D
Sbjct: 130 AALLMERLENVRSLADHAQLAGRGAPWEATGQLIARFHRAGLDHPDLNAHNILFDAGGHG 189
Query: 215 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTD 268
+IDF + V A + +R++ KR H + + G D+D D
Sbjct: 190 WLIDFDR--GVLRIPATRWRERNL--------KRLHRSLLKLRGNRSGEDVDKD 233
>sp|B2SLU1|KDKA_XANOP 3-deoxy-D-manno-octulosonic acid kinase OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=kdkA PE=3 SV=1
Length = 249
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 26/174 (14%)
Query: 111 RDYLR-------HRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDC--------NR 155
R YLR R+ Y W R + EF M+ L PVP + R
Sbjct: 70 RQYLRGGMAARVSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYR 129
Query: 156 HCVIMSLVQGY-PLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 214
++M ++ L QL + +E L+ R GL H D N NI+ D
Sbjct: 130 AALLMERLENVRSLADHAQLAGRGAPWEATGQLIARFHRAGLDHPDLNAHNILFDAGGHG 189
Query: 215 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTD 268
+IDF + V A + +R++ KR H + + G D+D D
Sbjct: 190 WLIDFDR--GVLRIPATRWRERNL--------KRLHRSLLKLRGNRSGEDVDKD 233
>sp|Q2P6W5|KDKA_XANOM 3-deoxy-D-manno-octulosonic acid kinase OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=kdkA PE=3 SV=1
Length = 249
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 26/174 (14%)
Query: 111 RDYLR-------HRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDC--------NR 155
R YLR R+ Y W R + EF M+ L PVP + R
Sbjct: 70 RQYLRGGMAARVSRDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYR 129
Query: 156 HCVIMSLVQGY-PLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKV 214
++M ++ L QL + +E L+ R GL H D N NI+ D
Sbjct: 130 AALLMERLENVRSLADHAQLAGRGAPWEATGQLIARFHRAGLDHPDLNAHNILFDAGGHG 189
Query: 215 TMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQETTDGDDGSDIDTD 268
+IDF + V A + +R++ KR H + + G D+D D
Sbjct: 190 WLIDFDR--GVLRIPATRWRERNL--------KRLHRSLLKLRGNRSGEDVDKD 233
>sp|Q9PBJ1|KDKA_XYLFA 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain 9a5c) GN=kdkA PE=3 SV=2
Length = 249
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 117 RNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQN 176
R+ Y W R ++ EF M+ L G PVP + C + VQ + + +L+
Sbjct: 83 RDRYFWCGGHRTRSVLEFRLMRELISRGLPVPTPLAA---CYVRYGVQYRAAILMERLEG 139
Query: 177 PDSV------------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
S+ +E I ++ R GL H D N NI++D + +IDF
Sbjct: 140 VSSLAMCVRGNSKETHWEQIGRMISRFHREGLDHADLNAHNILLDQAGQCWLIDF 194
>sp|Q87C81|KDKA_XYLFT 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=kdkA PE=3 SV=2
Length = 249
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 117 RNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQN 176
R+ Y W R ++ EF M+ L G PVP + C + VQ + + +L+
Sbjct: 83 RDRYFWCGGHRTRSVLEFRLMRELISRGLPVPTPLAA---CYVRHGVQYRAAILMERLEG 139
Query: 177 PDSV------------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
S+ +E I ++ R GL H D N NI++D + +IDF
Sbjct: 140 VSSLAMCVRGNSKEIHWEQIGRMISRFHREGLDHADLNAHNILLDQAGQCWLIDF 194
>sp|B2I5R8|KDKA_XYLF2 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain M23) GN=kdkA PE=3 SV=1
Length = 249
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 117 RNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQLQN 176
R+ Y W R ++ EF M+ L G PVP + C + VQ + + +L+
Sbjct: 83 RDRYFWCGGHRTRSVLEFRLMRELISRGLPVPTPLAA---CYVRHGVQYRAAILMERLEG 139
Query: 177 PDSV------------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
S+ +E I ++ R GL H D N NI++D + +IDF
Sbjct: 140 VSSLAMCVRGNSKEIHWEQIGRMISRFHREGLDHADLNAHNILLDQAGQCWLIDF 194
>sp|B2FR65|KDKA_STRMK 3-deoxy-D-manno-octulosonic acid kinase OS=Stenotrophomonas
maltophilia (strain K279a) GN=kdkA PE=3 SV=1
Length = 249
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 118 NSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCN--------RHCVIMSLVQGY-PL 168
+ Y W R + EF M+AL + PVP + R ++M ++G L
Sbjct: 84 DQYLWRGSDRTRSFAEFRLMRALREKKLPVPRPIAAYYMREGLRYRAAILMERIEGVRSL 143
Query: 169 VQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
+ + +E L+ R GL H D N NI+ D + +IDF
Sbjct: 144 ADRALVAGRGAPWEETGRLIARFHRAGLDHADLNAHNILFDGNGHGWLIDF 194
>sp|B4SLP5|KDKA_STRM5 3-deoxy-D-manno-octulosonic acid kinase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=kdkA PE=3 SV=1
Length = 249
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 118 NSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDC--------NRHCVIMSLVQGY-PL 168
+ Y W R + EF M+AL + PVP + R ++M ++G L
Sbjct: 84 DQYLWRGADRTRSFAEFRLMRALREKKLPVPRPLAAFYMREGLRYRAAILMERIEGVRSL 143
Query: 169 VQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 219
+ + +E L+ R GL H D N NI+ D + +IDF
Sbjct: 144 ADRALVAGRGAPWEETGRLIARFHRAGLDHADLNAHNILFDGNGHGWLIDF 194
>sp|Q9KVB9|KDKA_VIBCH 3-deoxy-D-manno-octulosonic acid kinase OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=kdkA
PE=3 SV=2
Length = 235
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 35/182 (19%)
Query: 60 LLHHDSSKSVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHR-- 117
LLH D S+ E +++G VL R G T F ++ + LRH
Sbjct: 18 LLHEDPSQCCNP-----------EFWQQNGKVLGSATGR-GTTWFVQLQQTQGALRHYRR 65
Query: 118 ---------NSYNWLYLSRLAALKEFAFMKALEDHGF--PVPNAVDCNRHCVIMS---LV 163
+SY + + + +EF + L D G P P A +H ++ L
Sbjct: 66 GGLFGKLVADSYWFTGWEKTRSYQEFMLLNHLRDAGVNVPRPIAARVQKHGLLYKADLLS 125
Query: 164 QGYP----LVQVNQLQNP--DSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMI 217
+ P LV + Q ++P D ++ I + ++ + + H D N NI+IDD EKV +I
Sbjct: 126 EKVPNARDLVSILQ-ESPISDELYRKIGREIRKMHDAQVNHTDLNIHNILIDDQEKVWII 184
Query: 218 DF 219
DF
Sbjct: 185 DF 186
>sp|Q87T74|KDKA_VIBPA 3-deoxy-D-manno-octulosonic acid kinase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=kdkA PE=3 SV=1
Length = 238
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 17/101 (16%)
Query: 147 VPNAVDCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNI 206
+PNA D ++S++Q PL P+ +++ I + ++ G+ H D N NI
Sbjct: 128 IPNARD------LVSILQEKPL--------PEGMYQKIGQEIAKMHNAGVNHTDLNIHNI 173
Query: 207 MIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVECIFKFFRK 247
+IDD +KV +IDF + H + + +++E + + F+K
Sbjct: 174 LIDDKDKVWIIDFDKCRKQEHGD---WKKQNLERLLRSFKK 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,053,238
Number of Sequences: 539616
Number of extensions: 7327878
Number of successful extensions: 42209
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 805
Number of HSP's that attempted gapping in prelim test: 34066
Number of HSP's gapped (non-prelim): 4142
length of query: 446
length of database: 191,569,459
effective HSP length: 121
effective length of query: 325
effective length of database: 126,275,923
effective search space: 41039674975
effective search space used: 41039674975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)