Query 013291
Match_columns 446
No_of_seqs 175 out of 1370
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 2E-132 3E-137 955.8 31.0 431 1-431 1-434 (443)
2 PLN00221 tubulin alpha chain; 100.0 3E-111 6E-116 870.2 33.3 431 1-431 1-441 (450)
3 PTZ00010 tubulin beta chain; P 100.0 1E-110 3E-115 865.8 33.5 444 1-444 1-444 (445)
4 PTZ00335 tubulin alpha chain; 100.0 5E-110 1E-114 860.1 33.5 427 1-427 1-437 (448)
5 PLN00220 tubulin beta chain; P 100.0 2E-109 5E-114 858.2 33.8 440 1-440 1-440 (447)
6 PLN00222 tubulin gamma chain; 100.0 1E-106 2E-111 835.6 33.1 428 1-429 2-445 (454)
7 cd02188 gamma_tubulin Gamma-tu 100.0 7E-107 2E-111 833.0 31.3 420 2-422 1-431 (431)
8 cd02187 beta_tubulin The tubul 100.0 3E-106 7E-111 829.8 33.2 424 2-425 1-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 3E-106 6E-111 831.8 31.4 424 2-425 1-434 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 1E-105 3E-110 828.2 32.5 417 1-428 1-452 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 1E-101 3E-106 742.9 26.6 426 1-427 2-441 (448)
12 cd02189 delta_tubulin The tubu 100.0 8.4E-98 2E-102 771.0 31.7 410 4-423 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 4.3E-98 9E-103 758.4 28.9 379 2-425 1-379 (379)
14 cd06059 Tubulin The tubulin su 100.0 4.9E-90 1.1E-94 703.4 30.0 381 3-424 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 3.9E-88 8.5E-93 648.2 15.9 403 1-419 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 1.2E-68 2.7E-73 516.3 15.5 346 42-427 6-351 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.2E-64 2.6E-69 507.6 24.6 327 3-371 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 2.6E-51 5.6E-56 424.3 28.9 408 2-424 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 9E-51 1.9E-55 383.9 9.2 215 3-223 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 1.6E-36 3.5E-41 281.4 8.6 185 49-244 3-192 (192)
21 KOG2530 Members of tubulin/Fts 100.0 9.3E-33 2E-37 272.4 11.7 256 1-275 1-341 (483)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 1.4E-31 3E-36 269.1 13.6 219 1-260 1-226 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 7.1E-27 1.5E-31 230.7 13.7 205 4-258 3-207 (303)
24 TIGR00065 ftsZ cell division p 99.9 3.8E-25 8.1E-30 221.8 13.2 205 4-258 20-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 2E-24 4.3E-29 214.1 13.0 208 4-260 3-210 (304)
26 PF03953 Tubulin_C: Tubulin C- 99.9 2.7E-24 5.9E-29 186.1 10.7 123 261-383 1-126 (126)
27 PRK13018 cell division protein 99.9 1.5E-23 3.3E-28 211.0 13.4 205 4-258 31-235 (378)
28 PF14881 Tubulin_3: Tubulin do 99.9 2.1E-21 4.5E-26 177.3 13.0 149 82-242 17-180 (180)
29 PRK09330 cell division protein 99.9 6.9E-22 1.5E-26 199.2 10.1 207 3-258 15-221 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.6 2.5E-15 5.4E-20 127.6 4.0 65 2-72 1-69 (115)
31 COG0206 FtsZ Cell division GTP 99.4 9.3E-13 2E-17 130.5 11.4 150 102-260 71-220 (338)
32 smart00865 Tubulin_C Tubulin/F 98.5 8.8E-08 1.9E-12 81.3 2.6 113 246-381 1-118 (120)
33 PF13809 Tubulin_2: Tubulin li 97.5 0.0016 3.5E-08 66.0 14.2 102 93-195 101-220 (345)
34 PF12953 DUF3842: Domain of un 67.9 11 0.00024 32.5 4.9 44 141-198 6-50 (131)
35 PF06908 DUF1273: Protein of u 64.4 24 0.00052 32.2 6.8 110 112-240 27-137 (177)
36 PF03610 EIIA-man: PTS system 64.2 19 0.0004 30.1 5.7 34 111-144 38-71 (116)
37 PRK14484 phosphotransferase ma 62.5 7.3 0.00016 33.5 2.9 28 114-143 42-69 (124)
38 PLN02847 triacylglycerol lipas 61.9 9.4 0.0002 41.3 4.1 62 103-168 224-287 (633)
39 cd00741 Lipase Lipase. Lipase 61.0 15 0.00034 32.0 4.8 53 103-159 1-53 (153)
40 TIGR00824 EIIA-man PTS system, 60.5 28 0.0006 29.3 6.1 32 113-144 41-72 (116)
41 cd00519 Lipase_3 Lipase (class 57.6 13 0.00028 34.9 4.0 58 100-161 98-155 (229)
42 cd00006 PTS_IIA_man PTS_IIA, P 52.7 31 0.00068 29.1 5.2 32 113-144 40-71 (122)
43 PRK09461 ansA cytoplasmic aspa 44.0 78 0.0017 32.0 7.3 94 108-209 63-157 (335)
44 PF01764 Lipase_3: Lipase (cla 39.5 13 0.00029 31.5 0.9 56 102-161 35-91 (140)
45 PF12210 Hrs_helical: Hepatocy 36.9 40 0.00086 27.5 3.1 55 368-425 28-89 (96)
46 PRK13660 hypothetical protein; 36.5 2E+02 0.0043 26.5 8.0 110 112-240 27-137 (182)
47 cd00411 Asparaginase Asparagin 35.0 1.3E+02 0.0029 30.1 7.3 94 108-209 60-155 (323)
48 PF00710 Asparaginase: Asparag 34.9 1.3E+02 0.0029 29.9 7.2 94 108-209 54-148 (313)
49 TIGR02153 gatD_arch glutamyl-t 32.7 1.6E+02 0.0035 30.6 7.6 91 108-205 120-211 (404)
50 TIGR02364 dha_pts dihydroxyace 32.6 42 0.00091 28.8 2.8 29 114-143 42-71 (125)
51 COG0783 Dps DNA-binding ferrit 32.4 86 0.0019 28.0 4.8 48 370-423 12-61 (156)
52 COG0572 Udk Uridine kinase [Nu 31.5 48 0.0011 31.3 3.2 27 135-162 9-35 (218)
53 KOG3178 Hydroxyindole-O-methyl 30.9 92 0.002 31.5 5.2 41 122-167 167-207 (342)
54 COG2893 ManX Phosphotransferas 28.6 1.4E+02 0.0031 26.2 5.5 62 100-166 30-91 (143)
55 PF01713 Smr: Smr domain; Int 28.2 2E+02 0.0043 22.2 5.9 54 115-171 10-69 (83)
56 PRK15088 PTS system mannose-sp 28.1 1.3E+02 0.0029 30.2 6.0 33 112-144 41-73 (322)
57 PF03283 PAE: Pectinacetyleste 27.6 1E+02 0.0023 31.4 5.2 50 105-161 132-183 (361)
58 PF02879 PGM_PMM_II: Phosphogl 27.4 48 0.001 26.9 2.2 27 131-157 20-46 (104)
59 TIGR00519 asnASE_I L-asparagin 27.3 1.9E+02 0.0041 29.2 6.9 94 108-209 59-158 (336)
60 PF08259 Periviscerokin: Periv 27.0 29 0.00063 16.7 0.5 8 255-262 3-10 (11)
61 COG1528 Ftn Ferritin-like prot 25.8 38 0.00083 30.6 1.4 34 374-407 97-132 (167)
62 smart00870 Asparaginase Aspara 25.8 2.3E+02 0.005 28.4 7.2 96 108-209 57-155 (323)
63 PRK15414 phosphomannomutase Cp 25.5 4.4E+02 0.0095 27.7 9.6 93 113-206 152-248 (456)
64 COG1929 Glycerate kinase [Carb 25.0 1.6E+02 0.0034 30.1 5.6 82 110-208 216-301 (378)
65 PRK04183 glutamyl-tRNA(Gln) am 24.6 2.5E+02 0.0055 29.3 7.4 90 108-205 133-223 (419)
66 PF02353 CMAS: Mycolic acid cy 24.1 1E+02 0.0022 30.1 4.2 64 99-169 29-93 (273)
67 COG1109 {ManB} Phosphomannomut 23.8 3E+02 0.0064 29.0 8.0 90 112-206 158-250 (464)
68 PRK14318 glmM phosphoglucosami 23.4 2.9E+02 0.0063 28.9 7.7 42 113-156 158-199 (448)
69 PTZ00489 glutamate 5-kinase; P 22.9 3.3E+02 0.0071 26.5 7.5 49 155-205 87-135 (264)
70 cd03089 PMM_PGM The phosphoman 22.8 2.8E+02 0.006 29.0 7.4 88 112-206 145-236 (443)
71 PF13508 Acetyltransf_7: Acety 22.2 1E+02 0.0022 23.1 3.2 23 144-166 40-62 (79)
72 COG3969 Predicted phosphoadeno 21.9 2.5E+02 0.0055 28.5 6.3 49 108-161 8-56 (407)
73 TIGR01732 tiny_TM_bacill conse 21.8 60 0.0013 19.8 1.3 13 140-152 1-13 (26)
74 PLN02408 phospholipase A1 21.8 1.8E+02 0.0039 29.8 5.5 64 111-178 179-244 (365)
75 PF02044 Bombesin: Bombesin-li 21.7 24 0.00051 18.2 -0.4 12 98-110 1-12 (14)
76 PF04695 Pex14_N: Peroxisomal 20.7 34 0.00074 29.7 0.1 27 390-419 25-51 (136)
77 PLN02371 phosphoglucosamine mu 20.4 2.7E+02 0.0058 30.4 6.9 73 130-206 261-337 (583)
78 PRK09542 manB phosphomannomuta 20.3 4.5E+02 0.0097 27.5 8.4 89 111-206 144-237 (445)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1.5e-132 Score=955.81 Aligned_cols=431 Identities=53% Similarity=1.006 Sum_probs=421.3
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCC
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (446)
||||||||+||||||||++||+++|+||||.++|.+....+.+.++.++||+|++.++|+||+|+|||||+||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999877666677899999999999999999999999999999999999
Q ss_pred CCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcC
Q 013291 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp 160 (446)
++.+|+|++++.|++|+|||||+|+|+.|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|+|+++||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccc
Q 013291 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (446)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~ 240 (446)
||.+.+|+|+|.++.++++|||||++|++++|.++||+++++||++|+++|.+.+++.+|+|.++|++||++++++|.++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccccC
Q 013291 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (446)
Q Consensus 241 R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (446)
||||++|.||.+|.++||||||+||+.++|+|++.+.+..+++.|+.++++++|+|+|+|++|+|++|+|++++.++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhccCCcccccccCCCceeeeeccCC---CCCcceeeeecCChhhHHHHHHHHHHHHhhccccccccc
Q 013291 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHW 397 (446)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh~ 397 (446)
+.++++++++.+++.|+..+|++|+|+++++++|+.+| ..++.++|+|+|+|+|...|+++.++|++||+|||||||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw 400 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW 400 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999998 677899999999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHhhccc
Q 013291 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAE 431 (446)
Q Consensus 398 Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (446)
|+++||||+||.||++++++|.++|++++++.++
T Consensus 401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~ 434 (443)
T COG5023 401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYL 434 (443)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999765433
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=2.6e-111 Score=870.18 Aligned_cols=431 Identities=42% Similarity=0.833 Sum_probs=407.9
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcc--ccccccccccccCCCCCCccceeecCCCCCccccccc
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDND--LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRS 78 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~ 78 (446)
||||||||+||||||||.+||+++|+||+++++|.+..+.. ...++.++||+|+.+++|+||+||||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643322 1245778999999999999999999999999999999
Q ss_pred CCCCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013291 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~ 158 (446)
++++++|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||+||||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcc
Q 013291 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (446)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~ 238 (446)
||++.+.+++|+|+...++++++|||++|++++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+++|.
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999998767889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccc
Q 013291 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (446)
Q Consensus 239 ~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (446)
++||||.++.||.++++||||||++||++++++|+.+.....+++++|.++++.+|+++++++.++|+.|+|||+++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999876666778899999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCC--------CCcceeeeecCChhhHHHHHHHHHHHHhhcc
Q 013291 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (446)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 390 (446)
|++.+.++.+.+.+++.++...|++|+|+++++++|+.+|. ..+.++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888888999999999999999988764 3457899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhhccc
Q 013291 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAE 431 (446)
Q Consensus 391 kkAflh~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (446)
||||||||+++||||+||.||+++|++|+++|+++.+...+
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~ 441 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAE 441 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999765544
No 3
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.2e-110 Score=865.81 Aligned_cols=444 Identities=89% Similarity=1.419 Sum_probs=420.3
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCC
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (446)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...++.++||+|+.+++|+||+|+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999999987755443334677899999999999999999999999999999888
Q ss_pred CCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcC
Q 013291 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp 160 (446)
++.+|++++++.+++|+|||||+|||..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccc
Q 013291 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (446)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~ 240 (446)
++.+++++|+|+...+++++++||++|++++|.+++|++++|||++|+++|.+.++++.|+|.++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999876789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccccC
Q 013291 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (446)
Q Consensus 241 R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (446)
||||.+|.|+.+|++||||||++||++++++|+.+.....+.++++.+|++++|+++++++.++|.+|+|||+++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999988766778889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCCCCcceeeeecCChhhHHHHHHHHHHHHhhcccccccccccC
Q 013291 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (446)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh~Y~~ 400 (446)
+.++++.+.+.+++.++.+.|++|+|+++++++|+++|...+.++++++|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~ 400 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTG 400 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhc
Confidence 99999999999888888999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhhccccccCCcchhhhhh
Q 013291 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEDYEYDDEEEAQE 444 (446)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~ 444 (446)
+||||+||.||+++|++|+++|+++.+...+.+.+||+++||-|
T Consensus 401 eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~~~~ 444 (445)
T PTZ00010 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYE 444 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhccC
Confidence 99999999999999999999999997765444445677766643
No 4
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=5e-110 Score=860.13 Aligned_cols=427 Identities=43% Similarity=0.855 Sum_probs=405.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcc--ccccccccccccCCCCCCccceeecCCCCCccccccc
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDND--LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRS 78 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~ 78 (446)
|||||+||+||||||||.+||+++++||+++++|.+..+.. ...+..++||+|+.+++|+||+||||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643322 1245778999999999999999999999999999999
Q ss_pred CCCCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013291 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~ 158 (446)
++++++|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcc
Q 013291 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (446)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~ 238 (446)
||++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|.
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999998667899999999999999999999999999999999999999999899999999999999999999
Q ss_pred cccCCCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccc
Q 013291 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (446)
Q Consensus 239 ~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (446)
++||||.++.|+.++++||||||++||++++++|+.+.....+++.+|.++++++|+++++++.++|.+++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999887666778899999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCC--------CCcceeeeecCChhhHHHHHHHHHHHHhhcc
Q 013291 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (446)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 390 (446)
|++.+.++.+.+.+++.+....|++|+|+++++++|+.+|. ..+.++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988889999999999999999988764 2467899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 013291 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427 (446)
Q Consensus 391 kkAflh~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~ 427 (446)
||||||||+++||||+||.||+++|++|+++|+++.+
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~ 437 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 437 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999864
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=2.3e-109 Score=858.19 Aligned_cols=440 Identities=97% Similarity=1.500 Sum_probs=415.5
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCC
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (446)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...++.++||+|+.+++|+||+|+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999999988765544334677899999999999999999999999999999988
Q ss_pred CCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcC
Q 013291 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp 160 (446)
++.+|++++++.+++|+|||||+|||..|+++.|.++|+||+++|+||++|||+++||+|||||||+|++|+++|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccc
Q 013291 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (446)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~ 240 (446)
++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||+.++++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccccC
Q 013291 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (446)
Q Consensus 241 R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (446)
||||.++.++.+++++|||||++||+.++++|+.......++++++.++++++++++++++++++.+|+||++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999987666678889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCCCCcceeeeecCChhhHHHHHHHHHHHHhhcccccccccccC
Q 013291 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (446)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh~Y~~ 400 (446)
+.+.++.+.+.+++.+..+.|++|+|+++++++|+++|...+.++++|+|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~ 400 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 99999999999888888899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhhccccccCCcchh
Q 013291 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEDYEYDDEE 440 (446)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~ 440 (446)
+||||+||.||+++|++|+++|+++.+...+.+.+|+|++
T Consensus 401 ~Gmee~ef~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~ 440 (447)
T PLN00220 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEE 440 (447)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999765433333455543
No 6
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.1e-106 Score=835.61 Aligned_cols=428 Identities=35% Similarity=0.690 Sum_probs=400.3
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCC
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (446)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...+..++||+|+.+++|+||+||||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 69999999999999999999999999999999987754433334677899999999999999999999999999999888
Q ss_pred CCcccCCCceeeccC--CCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013291 81 YGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~ 158 (446)
++++|++++++.+++ |+||||++||+ .|++..|+++|+||+++|.||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 889999999999986 69999999965 799999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCC-CCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCc
Q 013291 159 YPDRMMLTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (446)
Q Consensus 159 yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t 237 (446)
||++.+++++|+|+.. .+++++++||++|+|++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9999999999999853 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcchHHhhhhcccccCCccccccccccccccc-cccccccCHHHHHHhhccccccccccCCCC-----Cccc
Q 013291 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRALTVPELTQQMWDAKNMMCAADPRH-----GRYL 311 (446)
Q Consensus 238 ~~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~~l 311 (446)
+++||||.+|.|+.++++||||||++||++++++|+.... ...++..++.++++++|+++++++.++|++ ++||
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997642 345677899999999999999999998887 9999
Q ss_pred eeecccccCCChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCC---CCcceeeeecCChhhHHHHHHHHHHHHhh
Q 013291 312 TASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMASTFIGNSTSIQEMFRRVSEQFTAM 388 (446)
Q Consensus 312 s~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~i~~~l~~l~~~~~~m 388 (446)
|+++++||++.+.++.+.+.+++.++.+.|++|+|+++++++|+++|. ..+.++++|+|+|+|..+|+++.++|++|
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~m 400 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKL 400 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888999999999999999998884 46788999999999999999999999999
Q ss_pred cccccccccccCCCCC----hhhHHHHHHHHHHHHHHHHHHHhhc
Q 013291 389 FRRKAFLHWYTGEGMD----EMEFTEAESNMNDLVSEYQQYQDAT 429 (446)
Q Consensus 389 ~~kkAflh~Y~~~Gme----e~eF~ea~~~l~~l~~~Y~~~~~~~ 429 (446)
|+||||||||+++||+ ++||.||+++|++|+++|++++...
T Consensus 401 f~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~ 445 (454)
T PLN00222 401 RKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPD 445 (454)
T ss_pred HhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999993 8999999999999999999886433
No 7
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=7e-107 Score=833.02 Aligned_cols=420 Identities=38% Similarity=0.748 Sum_probs=397.7
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCC
Q 013291 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPY 81 (446)
Q Consensus 2 ~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 81 (446)
||||+||+||||||||.+||+++++||+++++|.+..+.+...+..++||+|+.+++|+||+|+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999999876544333356778999999999999999999999999999999888
Q ss_pred CcccCCCceeeccC--CCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhc
Q 013291 82 GQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (446)
Q Consensus 82 ~~~~~~~~~~~~~~--~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~y 159 (446)
+++|++++++.+++ |+||||++||+ .|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 88999999999987 99999999965 7999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEecCCCC-CCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcc
Q 013291 160 PDRMMLTFSVFPSPKV-SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (446)
Q Consensus 160 p~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~ 238 (446)
|++.+++++|+|+... +++++++||++|+|++|.+++|+++++||++|.++|.+.++++.|+|.++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998543 488999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcchHHhhhhcccccCCccccccccccccccc-cccccccCHHHHHHhhccccccccccCC-CCCccceeecc
Q 013291 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRALTVPELTQQMWDAKNMMCAADP-RHGRYLTASAM 316 (446)
Q Consensus 239 ~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~~ 316 (446)
++||||.+|.|+.++++||||||++||++++++|+.+.. ...++..+|.++++.+|+++++|+.++| .+++|||++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999998876 4667889999999999999999999999 89999999999
Q ss_pred cccCCChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCC---CCcceeeeecCChhhHHHHHHHHHHHHhhccccc
Q 013291 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 393 (446)
Q Consensus 317 ~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkA 393 (446)
+||++.++++.+.+.+++.+..+.|++|+|+++++++|+++|. +.+.++++++|+|+|.++|+++.++|++||+|||
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krA 399 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRA 399 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999988888889999999999999988874 4578999999999999999999999999999999
Q ss_pred ccccccCCCCC---hhhHHHHHHHHHHHHHHH
Q 013291 394 FLHWYTGEGMD---EMEFTEAESNMNDLVSEY 422 (446)
Q Consensus 394 flh~Y~~~Gme---e~eF~ea~~~l~~l~~~Y 422 (446)
|||||+++||| ++||.||+++|++|+++|
T Consensus 400 flH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 400 FLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred hhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999998
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3.2e-106 Score=829.79 Aligned_cols=424 Identities=87% Similarity=1.401 Sum_probs=405.1
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCC
Q 013291 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPY 81 (446)
Q Consensus 2 ~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 81 (446)
||||+||+||||||||.+||+++++||+++++|.+..+.+...+..++||+|+.+++|+||+|+||+||++|++++.++.
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999998876544433335678999999999999999999999999999998888
Q ss_pred CcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013291 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (446)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (446)
+.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCccccc
Q 013291 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (446)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R 241 (446)
+.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999998666699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccccCC
Q 013291 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKM 321 (446)
Q Consensus 242 ~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (446)
|||.+|.|+.+++++|||||++||++++++|+.......++.+++.+|++++|+++++++.++|.+++|||+++++||++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999886666778899999999999999999989999999999999999999
Q ss_pred ChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCCCCcceeeeecCChhhHHHHHHHHHHHHhhcccccccccccCC
Q 013291 322 STKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (446)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh~Y~~~ 401 (446)
.+.++.+.+.+++.+..+.|++|+|+++++++|+++|...+.++++|+|+|+|..+|++++++|++||+||||||||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~ 400 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhcc
Confidence 99999999999988888999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 013291 402 GMDEMEFTEAESNMNDLVSEYQQY 425 (446)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (446)
||||+||.||+++|++++++|+++
T Consensus 401 G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 401 GMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999876
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.6e-106 Score=831.80 Aligned_cols=424 Identities=42% Similarity=0.837 Sum_probs=401.9
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcc--ccccccccccccCCCCCCccceeecCCCCCcccccccC
Q 013291 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDND--LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSG 79 (446)
Q Consensus 2 ~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~ 79 (446)
||||+||+||||||||.+||+++++||+++++|.+..+.. ...+..++||+|+.+++|+||+|+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999987644332 23457889999999999999999999999999999988
Q ss_pred CCCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhc
Q 013291 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (446)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~y 159 (446)
+.+.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCccc
Q 013291 160 PDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCC 239 (446)
Q Consensus 160 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~ 239 (446)
|++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999986667899999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeeccccc
Q 013291 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG 319 (446)
Q Consensus 240 ~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 319 (446)
+||||..+.|+.+++++|||||++||++++++|+.+.....++..+|.+|++++|+++++|+.+++++++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999998766667788999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCC--------CCcceeeeecCChhhHHHHHHHHHHHHhhccc
Q 013291 320 KMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRR 391 (446)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~k 391 (446)
++.++++.+.+.+++.+..+.|++|+|+++++++|+.+|. ..++++++++|+|+|.++|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888888999999999999999998774 24578999999999999999999999999999
Q ss_pred ccccccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 013291 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425 (446)
Q Consensus 392 kAflh~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (446)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.3e-105 Score=828.25 Aligned_cols=417 Identities=34% Similarity=0.678 Sum_probs=393.0
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcC-CCCCCCCCCCccccccccccccccCC-----CC--CCccceeecCCCCCc
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHG-IDSTGRYNGDNDLQLERVNVYYNEAS-----CG--RFVPRAVLMDLEPGT 72 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~-~~~~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pR~llvD~e~~~ 72 (446)
|||||+||+||||||||.+||+++|+||+ ++++|.+ .+..++||++.. .+ +|+||+||||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777754 246789998532 23 499999999999999
Q ss_pred ccccccCCCCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHH
Q 013291 73 MDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (446)
Q Consensus 73 i~~i~~~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~ll 152 (446)
|++++.++++.+|++++++.+++|+||||++|||..|++..|+++|+||+++|+||+||||+++||+|||||||+|+.|+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCC-------------
Q 013291 153 SKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTT------------- 219 (446)
Q Consensus 153 e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~------------- 219 (446)
|.|+|+||++.+++++|||+ ..++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.
T Consensus 154 e~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 99999999999999999998 5688999999999999999999999999999999999988877663
Q ss_pred --------------CCcccchHHHHHhhccCcccccCCCCCcchHHhhhhcccccCCccccccccccccccccccccccC
Q 013291 220 --------------PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 285 (446)
Q Consensus 220 --------------~~~~~~N~iia~~i~~~t~~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t 285 (446)
+.|+++|++||++|+++|.++||||.+|.|+.++.+||||||++||++++++|+.+.....+...+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence 789999999999999999999999999999999999999999999999999999876666678889
Q ss_pred HHHHHHhhccccccccccCCCCCccceeecccccCCChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCCCCccee
Q 013291 286 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMAS 365 (446)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~ 365 (446)
|.+|++.+|+++++|+.++|.+++|||+++++||++.+.++.+.+.+++ ..+.|++|+|+++++++|+++|...+.++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk--~~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 390 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLK--EQLNMIYWNEDGFKTGLCNVSPLGQPYSL 390 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHh--ccccccccCCCceEEEeeccCCCCCceeE
Confidence 9999999999999999999999999999999999998999998888875 34889999999999999999998889999
Q ss_pred eeecCChhhHHHHHHHHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 013291 366 TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (446)
Q Consensus 366 ~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~ 428 (446)
++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++|+++|+++...
T Consensus 391 ~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 391 LCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred EEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999 7999999999999999999999999643
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=1.4e-101 Score=742.87 Aligned_cols=426 Identities=36% Similarity=0.723 Sum_probs=398.8
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCC
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (446)
||||||+|+||||||||.+||+++|.||||+++|......++..++.++||++..++.|+|||||||+||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 68999999999999999999999999999999999665555667889999999999999999999999999999999999
Q ss_pred CCcccCCCceeec--cCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013291 81 YGQIFRPDNFVFG--QSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (446)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~ 158 (446)
++++|++++++.. ..|+|||||.||. +|+++.|+++|.|+|++|.||+|.||+++||++||||||+||.|+|.|+|.
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999998764 4689999999985 699999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCC-CCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCc
Q 013291 159 YPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (446)
Q Consensus 159 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t 237 (446)
||||.+.+++|||.. ..+|++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.+.+|+|.++|++||.++++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999974 3789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcchHHhhhhcccccCCccccccccccccccccc--cccccCHHHHHHhhccccccccccCC---CCCccce
Q 013291 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ--QYRALTVPELTQQMWDAKNMMCAADP---RHGRYLT 312 (446)
Q Consensus 238 ~~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~--~~~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ls 312 (446)
.++||||+++.+|..|...|+|+|++||+.+++.|++.+... .+++.++.+.+++++.|+++|+...+ .+..|++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 999999999999999999999999999999999999987644 35888999999999999999988765 2346889
Q ss_pred eecccccCCChHHHHHHHHHhhccCCcccccccCCCceeeeeccCC---CCCcceeeeecCChhhHHHHHHHHHHHHhhc
Q 013291 313 ASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMF 389 (446)
Q Consensus 313 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~ 389 (446)
...++.|.+.+..+...+.+++.++...|+.|.|.++.+...+..| .+++.|+.+|+|||+|..+|++++.+|+||+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklr 400 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLR 400 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888899999999999988766554 4578899999999999999999999999999
Q ss_pred ccccccccccCCCCChh---hHHHHHHHHHHHHHHHHHHHh
Q 013291 390 RRKAFLHWYTGEGMDEM---EFTEAESNMNDLVSEYQQYQD 427 (446)
Q Consensus 390 ~kkAflh~Y~~~Gmee~---eF~ea~~~l~~l~~~Y~~~~~ 427 (446)
+||||||+|.++||+++ ||.|+++.+++++++|+...+
T Consensus 401 k~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~ 441 (448)
T KOG1374|consen 401 KKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQ 441 (448)
T ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999 999999999999999988744
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=8.4e-98 Score=770.99 Aligned_cols=410 Identities=28% Similarity=0.552 Sum_probs=378.0
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCCC-
Q 013291 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG- 82 (446)
Q Consensus 4 Iitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~- 82 (446)
||+||+||||||||.+||+++++||+++++|.+. ...+..++||.|..+++|+||+|+||+||++|+++++++.+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998887653 12456789999999999999999999999999999986543
Q ss_pred -cccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013291 83 -QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (446)
Q Consensus 83 -~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (446)
.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCccccc
Q 013291 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (446)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R 241 (446)
+.+++++|+|+ ..+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++||++|+++|.+.|
T Consensus 158 ~~~~~~~v~P~-~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPY-TTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCC-CCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 99999999997 47899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-C-------CCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhc---cccccccc--------
Q 013291 242 F-P-------GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMW---DAKNMMCA-------- 302 (446)
Q Consensus 242 ~-~-------~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~-------- 302 (446)
+ + |..+.++.+++++|||+|++||++++++|+.+.....++..+|.+++++++ .+++++..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~ 316 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRP 316 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccc
Confidence 7 5 335899999999999999999999999999887667788899999999976 56666654
Q ss_pred -----------cCCCCCccceeecccccCCChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCC--CCcceeeeec
Q 013291 303 -----------ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--GLKMASTFIG 369 (446)
Q Consensus 303 -----------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--~~~~s~~~l~ 369 (446)
+++..++||++++++||+..+.++...+ +....|++|+|+++++++|+.++. ..++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~ 391 (446)
T cd02189 317 EGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVS 391 (446)
T ss_pred ccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEe
Confidence 3567899999999999998777766433 356889999999999999988775 3689999999
Q ss_pred CChhhHHHHHHHHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHH
Q 013291 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423 (446)
Q Consensus 370 N~t~i~~~l~~l~~~~~~m~~kkAflh~Y~~~Gmee~eF~ea~~~l~~l~~~Y~ 423 (446)
|+|+|..+|++++++|++||+||||||||+++||||+||.||+++|++++++|+
T Consensus 392 Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 392 NSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=4.3e-98 Score=758.38 Aligned_cols=379 Identities=37% Similarity=0.736 Sum_probs=363.8
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCC
Q 013291 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPY 81 (446)
Q Consensus 2 ~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 81 (446)
||||+||+||||||||.+||+++++|| |+||+|+||+||++|++++.++.
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 799999999999999999999999997 67999999999999999999888
Q ss_pred CcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013291 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (446)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (446)
+.+|++++++.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||++||||||+|+.|+|.|+|+||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred ccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCccccc
Q 013291 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (446)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R 241 (446)
+.+++++|+|+. .++++++|||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|.++|
T Consensus 131 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~r 197 (379)
T cd02190 131 VYRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMR 197 (379)
T ss_pred cceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceee
Confidence 999999999995 5888999999999999999999999999999996 699999999999999999999
Q ss_pred CCCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccccCC
Q 013291 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKM 321 (446)
Q Consensus 242 ~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (446)
|||.+|.|+.++.++|||||++||++++++|+.......+++.++.+|++.+++++++|+.+++.+++||++++++||++
T Consensus 198 f~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~ 277 (379)
T cd02190 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNV 277 (379)
T ss_pred cccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999876666678899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCCCCcceeeeecCChhhHHHHHHHHHHHHhhcccccccccccCC
Q 013291 322 STKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (446)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh~Y~~~ 401 (446)
.+.++.+.+.+++.+ ..|++|+|+++++++|+++|...+.++++++|+|+|..+|++++++|++||+||||||||+++
T Consensus 278 ~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~e 355 (379)
T cd02190 278 SVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQV 355 (379)
T ss_pred CHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCC
Confidence 999999888877654 679999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 013291 402 GMDEMEFTEAESNMNDLVSEYQQY 425 (446)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (446)
||||+||.||+++|++++++|+++
T Consensus 356 G~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 356 GMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=4.9e-90 Score=703.44 Aligned_cols=381 Identities=51% Similarity=0.942 Sum_probs=363.0
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCCC
Q 013291 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG 82 (446)
Q Consensus 3 EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~ 82 (446)
|||+||+||||||||.+||+++ |+||+||++++.++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999865 9999999999999988888
Q ss_pred cccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCc
Q 013291 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (446)
.+|++++++.+++|+||||++||+..|++..|+++|+||+++|+||.+|||+++||++||||||+|+.|+|.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred ccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccC
Q 013291 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRF 242 (446)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~ 242 (446)
.+++++|+|+...+++++++||++|++.+|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++|+
T Consensus 122 ~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~ 201 (382)
T cd06059 122 LINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRF 201 (382)
T ss_pred ceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccccc
Confidence 99999999996555689999999999999999999999999999999999888888999999999999999999999999
Q ss_pred CCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccccCCC
Q 013291 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMS 322 (446)
Q Consensus 243 ~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (446)
||..|.|+.+++++|+|||++||++++++|+.+.....+...++.+++++++++++++..+++..++||++++++||+..
T Consensus 202 ~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~ 281 (382)
T cd06059 202 PGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVF 281 (382)
T ss_pred CCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCC
Confidence 99999999999999999999999999999998766666778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccCCcccccccCCCceeeeeccCCC-CCcceeeeecCChhhHHHHHHHHHHHHhhcccccccccccCC
Q 013291 323 TKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT-GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (446)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh~Y~~~ 401 (446)
+.++.+.+.+++.+.... +|+|+++++++|+++|. ...+++++++|+|+|.++|++++++|++||+||||||||+++
T Consensus 282 ~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~ 359 (382)
T cd06059 282 QSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGE 359 (382)
T ss_pred HHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCc
Confidence 999998888877655443 89999999999999998 888999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q 013291 402 GMDEMEFTEAESNMNDLVSEYQQ 424 (446)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~ 424 (446)
||||+||.||+++|++++++|++
T Consensus 360 G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 360 GMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999973
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=3.9e-88 Score=648.17 Aligned_cols=403 Identities=42% Similarity=0.827 Sum_probs=380.5
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccc--cccccccccccCCCCCCccceeecCCCCCccccccc
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL--QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRS 78 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~--~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~ 78 (446)
|||||.|++||.|.|||++.|+++|.|||+.++|....+.+. ..+.+++||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999988765443 24467899999999999999999999999 999999
Q ss_pred CCCCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013291 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (446)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~ 158 (446)
++|+.+|||++++.|+++++||+|+|+|++|+|..+..+++||+.++.|..||||.+||++|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcc
Q 013291 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (446)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~ 238 (446)
|+||..+.++++|.+..+..+++|||++|+.....+++|+.+++||.+++.+|++.+.+..|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccc
Q 013291 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (446)
Q Consensus 239 ~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (446)
++||.|.+|.||.+|++|||||| + ++|+.+..+....+.++.+++...|.+.++|++|+|.+|+|+++|+++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8898887777788899999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHhhccCCccccccc-CCCceeeeeccCCCCCcceeeeecCChhhHHHHHHHHHHHHhhccccccccc
Q 013291 319 GKMSTKEVDEQMINVQNKNSSYFVEWI-PNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHW 397 (446)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~-p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh~ 397 (446)
|++.|+++..+++.+|.+.+++|++-. |.+ ......++.|+|+|+|+|++.+.++..+|+.||.||||+||
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd~~v~gg--------~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhw 384 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVDTVVPGG--------DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 384 (407)
T ss_pred CCcCcccchHHHHhhhhccccccceeeccCc--------chhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeee
Confidence 999999999999999999999998722 111 11235678899999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHH
Q 013291 398 YTGEGMDEMEFTEAESNMNDLV 419 (446)
Q Consensus 398 Y~~~Gmee~eF~ea~~~l~~l~ 419 (446)
|+++||||+||.||+++|..|.
T Consensus 385 yvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 385 YVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred ccCCCccccchhhhhhhHHhhc
Confidence 9999999999999999998764
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=1.2e-68 Score=516.27 Aligned_cols=346 Identities=87% Similarity=1.372 Sum_probs=329.8
Q ss_pred ccccccccccccCCCCCCccceeecCCCCCcccccccCCCCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHH
Q 013291 42 LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121 (446)
Q Consensus 42 ~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir 121 (446)
.+..+++++|.+...++|+||+|++||+|++++.++.++++.+|+|++ +++| .|+|..|.+..|.
T Consensus 6 ~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------ 70 (369)
T KOG1375|consen 6 LQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------ 70 (369)
T ss_pred ceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc------
Confidence 456788999999999999999999999999999999999999999998 4444 8899999888776
Q ss_pred HHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEE
Q 013291 122 KEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV 201 (446)
Q Consensus 122 ~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~ 201 (446)
.||+|||||++||++||||||.|++++..++++||.+.+.+++|.|+++ ++++++|||+.|++..|.+++|.+++
T Consensus 71 ----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~c 145 (369)
T KOG1375|consen 71 ----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFC 145 (369)
T ss_pred ----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccc
Confidence 8999999999999999999999999999999999999999999999955 99999999999999999999999999
Q ss_pred ecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccCCCCCcchHHhhhhcccccCCccccccccccccccccccc
Q 013291 202 LDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281 (446)
Q Consensus 202 ~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~ 281 (446)
+||++|+++|.+.+++..++ ++|..+||||.+|.|+.++..|++|+|++||+.++++|+......++
T Consensus 146 idNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~ 212 (369)
T KOG1375|consen 146 IDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY 212 (369)
T ss_pred cccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccc
Confidence 99999999999999988887 88999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhhccccccccccCCCCCccceeecccccCCChHHHHHHHHHhhccCCcccccccCCCceeeeeccCCCCC
Q 013291 282 RALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGL 361 (446)
Q Consensus 282 ~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~ 361 (446)
+..+++++++++|+.+|++..++ ||+++.++|| ..+++.+.+..++.|.+..|++|+|+++|+.+|..+|...
T Consensus 213 ~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl 285 (369)
T KOG1375|consen 213 RALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL 285 (369)
T ss_pred ccccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc
Confidence 99999999999999999999887 9999999999 6788888888899999999999999999999999999999
Q ss_pred cceeeeecCChhhHHHHHHHHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 013291 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427 (446)
Q Consensus 362 ~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~ 427 (446)
+.+++.++|+|+|.+.|+++.++|..||+||||||||.++||||+||.||..++++++.+|+++.+
T Consensus 286 kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~ 351 (369)
T KOG1375|consen 286 KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQ 351 (369)
T ss_pred cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999943
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=1.2e-64 Score=507.62 Aligned_cols=327 Identities=49% Similarity=0.874 Sum_probs=303.6
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCCC
Q 013291 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG 82 (446)
Q Consensus 3 EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~ 82 (446)
|||+||+||||||||++||++. |+||+|+.+++.++..+..
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999843 9999999999999888777
Q ss_pred cccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCc
Q 013291 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (446)
.+|++.+.+.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|+.+++.|||+||++
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred cccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccC
Q 013291 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRF 242 (446)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~ 242 (446)
.+++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+.+..+.|.++|++||++|+++|.++|+
T Consensus 122 ~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 200 (328)
T cd00286 122 LKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRF 200 (328)
T ss_pred ceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccccc
Confidence 99999999984433 69999999999999999999999999999999998888888899999999999999999999999
Q ss_pred CCCCcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccccCCC
Q 013291 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMS 322 (446)
Q Consensus 243 ~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (446)
||..|.|+.++.++|+|+|++||++++++|+...........++.++++++++++++++.+++..++++++.+++||+..
T Consensus 201 ~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~ 280 (328)
T cd00286 201 DGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVS 280 (328)
T ss_pred CccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCC
Confidence 99999999999999999999999999999998655555667789999999999999998888889999999999999998
Q ss_pred hHHHHHHHHHhhccCCcccccccCCCceeeeeccCCC-CCcceeeeecCC
Q 013291 323 TKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT-GLKMASTFIGNS 371 (446)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~ 371 (446)
..++.+.+..++.+..+. +|+|++++++.|+.++. ..+.++++++|+
T Consensus 281 ~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~l~Ns 328 (328)
T cd00286 281 PSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 (328)
T ss_pred hHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCCCcCeEEEEeccC
Confidence 899988888877665544 89999999999998886 678889999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=2.6e-51 Score=424.27 Aligned_cols=408 Identities=21% Similarity=0.247 Sum_probs=290.6
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCC----CCCCccceeecCCCCCcccccc
Q 013291 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEAS----CGRFVPRAVLMDLEPGTMDSVR 77 (446)
Q Consensus 2 ~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~llvD~e~~~i~~i~ 77 (446)
|||||||+||++|+||+||||.|...+. |.++.+....+++|+||++. ..+|+||+|++|++++...--+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~------y~~~~~~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFG------YDPDSPASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcC------CCCCCccccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999999944432 33333334578899999975 5699999999999997532111
Q ss_pred cC----------------CCCcccCCCceeec-----cCCCCCCCcccccc---hhhhhHHHHHHHHHHHHhhcCCCCCc
Q 013291 78 SG----------------PYGQIFRPDNFVFG-----QSGAGNNWAKGHYT---EGAELIDSVLDVVRKEAENCDCLQGF 133 (446)
Q Consensus 78 ~~----------------~~~~~~~~~~~~~~-----~~~~gnn~a~G~~~---~g~~~~e~~~d~ir~~~E~cD~lqgf 133 (446)
.+ -.+-.|||+++..- ..+.+++|+.|+-. .+.+..|+++|+||+++|+||+||||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 11 11335899988653 24556677666422 34567799999999999999999999
Q ss_pred eeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCC----CCccchhhHHHHHHHHhhhcCCeeEEecCc-hhh
Q 013291 134 QVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV----SDTVVEPYNATLSVHQLVENADECMVLDNE-ALY 208 (446)
Q Consensus 134 ~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~-~l~ 208 (446)
++++|++||| ||+|+.++|.|+|||||+.++++++.|.... .+.++++||++|++.+|.+++|+++|+.-. .+|
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 8999999999999999999999999996432 257899999999999999999999999643 333
Q ss_pred hhh-----hcccCCCCCCcccchHHHHHhhccCcccccCCCCCcchHHhhhhcccccCCccccccccccccccccccccc
Q 013291 209 DIC-----FRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRA 283 (446)
Q Consensus 209 ~~~-----~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~ 283 (446)
... ...+.++..+..+..+++|.+|+++|.++|..+.. .+|.+|+..|.+..|.........|+... .+
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gRki~~~~~a~P~p~~-----~~ 307 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGRKVVAAGLALPFPMV-----GG 307 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccchhhhhccCCCCCCC-----CC
Confidence 221 11223334455677899999999999999999766 57999999999877755555555777652 23
Q ss_pred cCHHHHHHhhcc--ccccccccCCCCCccceeecccccCCCh----------------------HHHHHHHHHhhccCCc
Q 013291 284 LTVPELTQQMWD--AKNMMCAADPRHGRYLTASAMFRGKMST----------------------KEVDEQMINVQNKNSS 339 (446)
Q Consensus 284 ~t~~~l~~~~~~--~~~~~~~~~~~~~~~ls~~~~~RG~~~~----------------------~~~~~~~~~~~~~~~~ 339 (446)
.++.+++..+-. +..++.+..+...+++++++++||.... .++.+.+.+...+...
T Consensus 308 ~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~ 387 (493)
T cd06060 308 QDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSM 387 (493)
T ss_pred CcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcc
Confidence 455666655421 1123322123356899999999996421 1122212111111111
Q ss_pred ccccccCCCceee----------eeccC------C--CC---Cc--ceeeeecCChhhHHHHHHHHHHHHhhcccccccc
Q 013291 340 YFVEWIPNNVKST----------VCDIP------P--TG---LK--MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLH 396 (446)
Q Consensus 340 ~f~~w~p~~~~~~----------~~~~~------~--~~---~~--~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflh 396 (446)
....-.|.|+++. +.... . .. ++ ..++.|+|++++.+.|+.++.++.|+--+| +|
T Consensus 388 ~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~ 465 (493)
T cd06060 388 SALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--KA 465 (493)
T ss_pred hhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--hh
Confidence 1011111111111 10000 0 00 11 235779999999999999999999999999 99
Q ss_pred cccCCCCChhhHHHHHHHHHHHHHHHHH
Q 013291 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (446)
Q Consensus 397 ~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 424 (446)
.|...|+|+|||+|+++.|.++.++|++
T Consensus 466 ~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 466 SFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred cccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999963
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=9e-51 Score=383.86 Aligned_cols=215 Identities=47% Similarity=0.948 Sum_probs=200.7
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCCC
Q 013291 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG 82 (446)
Q Consensus 3 EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~ 82 (446)
|||+||+||||||||.+||++++.||+++++ ........+.++||++...++|+||+|+||+|+++++.++..+.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPD----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTT----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccc----cccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999876 222234567789999999999999999999999999999888777
Q ss_pred cccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCc
Q 013291 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (446)
.+|++++++.+++|+|+||+.||+..|+++.++++|+||+.+|+||.+|||+++||+|||||||+++.|++.|+++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcc
Q 013291 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFG 223 (446)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~ 223 (446)
.+++++|+|+ .. +.++++||++++|++|.+++|+++++||++|.++|.+.+++.+|+|+
T Consensus 157 ~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 157 PIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999998 44 89999999999999999999999999999999999999998888774
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=1.6e-36 Score=281.43 Aligned_cols=185 Identities=39% Similarity=0.693 Sum_probs=171.0
Q ss_pred cccccCCCCCCccceeecCCCCCcccccccCCCCcccCCCceeeccCCCCCCCcccccc-----hhhhhHHHHHHHHHHH
Q 013291 49 VYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT-----EGAELIDSVLDVVRKE 123 (446)
Q Consensus 49 ~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~~~gnn~a~G~~~-----~g~~~~e~~~d~ir~~ 123 (446)
++|.++ ++.||+|++|+++++++.+..++.+..|++.+.+.++.++||||++||+. .|++..++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 355543 78899999999999999888777777899988889999999999999998 8999999999999999
Q ss_pred HhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEec
Q 013291 124 AENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203 (446)
Q Consensus 124 ~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~d 203 (446)
+|+| ++|+++||+|||||||+++.+++.++ +||+.. ++++++|+ ..|.++++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999994 57889999999999999999999999999
Q ss_pred CchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccCCC
Q 013291 204 NEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 244 (446)
Q Consensus 204 N~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~~~ 244 (446)
|++|.+++.+.+.+ .+.|.++|++||+.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877765 78999999999999999999999986
No 21
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.98 E-value=9.3e-33 Score=272.42 Aligned_cols=256 Identities=23% Similarity=0.335 Sum_probs=174.0
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcccccccc-ccccccCCC----CCCccceeecCCCCCcccc
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERV-NVYYNEASC----GRFVPRAVLMDLEPGTMDS 75 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~-~~~F~e~~~----~~~~pR~llvD~e~~~i~~ 75 (446)
||||+|||+|+.+|++|+||||+|..-.++.++.... + ..... ||+++.+++ -+|+||++++|+++.+...
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~---~-~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~ 76 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEP---P-GELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTL 76 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCC---h-hhcCcchhhhhccccccCceeeccceeEEecCcccccc
Confidence 9999999999999999999999995555544432211 1 11222 899998753 4899999999999854311
Q ss_pred ------------------------cccCCC-------------------------------------------CcccCCC
Q 013291 76 ------------------------VRSGPY-------------------------------------------GQIFRPD 88 (446)
Q Consensus 76 ------------------------i~~~~~-------------------------------------------~~~~~~~ 88 (446)
+++.+. +..|||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~ 156 (483)
T KOG2530|consen 77 KYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPR 156 (483)
T ss_pred ccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCcc
Confidence 000000 1122333
Q ss_pred ceeeccCCCCCCCcccccchhhhhH------HHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCc
Q 013291 89 NFVFGQSGAGNNWAKGHYTEGAELI------DSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (446)
Q Consensus 89 ~~~~~~~~~gnn~a~G~~~~g~~~~------e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (446)
.+..-+..--+.-+.+-|..|.+++ +++.|+||.++|+||.||||+++.++.+||| |+++.+++.|+|||+++
T Consensus 157 tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~ 235 (483)
T KOG2530|consen 157 TLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKK 235 (483)
T ss_pred ccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCC
Confidence 2211110000000123344555444 7789999999999999999999999999996 99999999999999999
Q ss_pred eeEEEEEecCCCC-CCc---cch---hhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhcc
Q 013291 163 MMLTFSVFPSPKV-SDT---VVE---PYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235 (446)
Q Consensus 163 ~i~~~~v~P~~~~-~~~---~~~---~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~ 235 (446)
.++++...|.+.. .+. +-. ..|.++++.+|.+.|++++|+.--. .++ ......+++|.++++
T Consensus 236 ~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~~~ds 304 (483)
T KOG2530|consen 236 AVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLARAFDS 304 (483)
T ss_pred ceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHhhccc
Confidence 9999999985322 222 222 5789999999999999999993111 111 235677999999999
Q ss_pred CcccccCCCCCcchHHhhhhcccccCCccccccccccccc
Q 013291 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS 275 (446)
Q Consensus 236 ~t~~~R~~~~~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~ 275 (446)
+|.|+|.-++.+.-+.+ .+++..+.........|+..
T Consensus 305 ~tlptr~~ssS~~~~~d---~ls~l~~~~~~~g~alpf~~ 341 (483)
T KOG2530|consen 305 ITLPTRLISSSNLRQRD---TLSYLGSKVITLGYALPFPL 341 (483)
T ss_pred ccccceecchhHHHHHH---HHHHHHHHHHHhhhccCCCc
Confidence 99999998875544444 44444444444444455543
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=1.4e-31 Score=269.07 Aligned_cols=219 Identities=22% Similarity=0.273 Sum_probs=186.5
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCC
Q 013291 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (446)
Q Consensus 1 M~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (446)
|| |..|.+|+||+.|-+++++.- .. ...+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~~-----~~-----------------------~~~~~~~~~iavntD~~~L~~l~~-- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRHD-----KR-----------------------SGFGYCVGALAINTAKNDLKGLKH-- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHhC-----CC-----------------------cCCccceeEEEEECCHHHHHhhhc--
Confidence 55 788999999999999987521 00 123688999999999998887654
Q ss_pred CCcccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCC--CCCceeeecCCCCcccCchHHHHHHHHhh
Q 013291 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (446)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~--lqgf~v~~s~~GGtGSG~~s~lle~l~d~ 158 (446)
.+.++.++.|++.+....+.|.+..|++..++..|.||+.+|.||. +|+|++++|+|||||||+++.+++.++++
T Consensus 50 ---~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~ 126 (349)
T cd02202 50 ---IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKER 126 (349)
T ss_pred ---CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHh
Confidence 3356778887754333333344456889999999999999999997 99999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcc
Q 013291 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (446)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~ 238 (446)
|| +.+++++++|+. .+..+++||+++++++|.+++|.++++||++|.+++.. + .+.|+++|++||+.|..++.
T Consensus 127 ~~-~~~~~iv~~P~~--~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l~~ 199 (349)
T cd02202 127 YE-EPVYALGVLPAR--EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLLLR 199 (349)
T ss_pred CC-ccEEEEEEecCC--CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHHHH
Confidence 99 889999999984 34589999999999999999999999999999997632 2 37899999999999999999
Q ss_pred cccC-----CCCCcchHHhhhhccccc
Q 013291 239 CLRF-----PGQLNSDLRKLAVNLIPF 260 (446)
Q Consensus 239 ~~R~-----~~~~n~~l~~l~~~L~p~ 260 (446)
+.|+ ||.+|.|+.++.++|.+.
T Consensus 200 ~~r~~~~~~~g~invD~~dv~~~L~~~ 226 (349)
T cd02202 200 AGEANAGDSVGESVLDASEVINTLSGG 226 (349)
T ss_pred hhhcccCCCCCeEeccHHHHHHHhccC
Confidence 9999 999999999999999765
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.94 E-value=7.1e-27 Score=230.68 Aligned_cols=205 Identities=22% Similarity=0.300 Sum_probs=167.1
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCCCc
Q 013291 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQ 83 (446)
Q Consensus 4 Iitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~ 83 (446)
|..|.+|+||+.+-+++++. ++ . -.+.+.+|++...++.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~-------------------------~---~~~~iainTd~~~L~~~~a-~~ki 48 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK-------------------------E---GRSAVAVNTDAQDLLGLEA-ENRV 48 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC-------------------------C---CccEEEEECcHHHHhcCCC-CcEE
Confidence 77899999999999988651 10 0 1467899999877765542 1111
Q ss_pred ccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCce
Q 013291 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (446)
Q Consensus 84 ~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~ 163 (446)
++.++ .+...|+|+||.. |++..++.+|+||+.+|.||. |++++++|||||||+++.+++.+++.|+ .
T Consensus 49 ~iG~~--~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~--~ 116 (303)
T cd02191 49 LIGQA--RTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT--L 116 (303)
T ss_pred ecCCc--cccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC--C
Confidence 22211 1234588899864 568999999999999999994 8999999999999999999999999986 3
Q ss_pred eEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccCC
Q 013291 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243 (446)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~~ 243 (446)
+++|.|.+...|..+++||+.+++++|.+++|.++++||++|.+++.+ +.+. +.|+.+|++||+.+.++|.++|+|
T Consensus 117 --~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~ 192 (303)
T cd02191 117 --TVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIE 192 (303)
T ss_pred --EEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccC
Confidence 444555444667889999999999999999999999999999999976 7764 589999999999999999999999
Q ss_pred CCCcchHHhhhhccc
Q 013291 244 GQLNSDLRKLAVNLI 258 (446)
Q Consensus 244 ~~~n~~l~~l~~~L~ 258 (446)
|.+|.|+.++.+.|-
T Consensus 193 g~invD~~dv~~~l~ 207 (303)
T cd02191 193 GEINVDFADVKNVMD 207 (303)
T ss_pred CcccCCHHHHHHHhc
Confidence 999999999988763
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.92 E-value=3.8e-25 Score=221.78 Aligned_cols=205 Identities=19% Similarity=0.283 Sum_probs=162.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCCCc
Q 013291 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQ 83 (446)
Q Consensus 4 Iitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~ 83 (446)
|..|.+|+||+.+-+++++.- + .-...+.+|++...++.+... .+-
T Consensus 20 i~viGvGg~G~n~v~~l~~~~-----~----------------------------~~~~~iainTD~~~L~~~~a~-~ki 65 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEEG-----V----------------------------EGVEFIAINTDAQHLKTTKAD-KKI 65 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHcC-----C----------------------------CceEEEEEECCHHHHhcCCCC-eEE
Confidence 778999999999999886531 0 014568888887665544321 111
Q ss_pred ccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCce
Q 013291 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (446)
Q Consensus 84 ~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~ 163 (446)
++.++ .++..|+|++|+ .|++..++.+|.||+.+|.||.+ ++++|+|||||||+++.+++.++ +|+ +.
T Consensus 66 ~iG~~--~t~G~GaG~~~~-----~G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak-e~~-~l 133 (349)
T TIGR00065 66 LIGKK--LTRGLGAGGNPE-----IGRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK-ELG-AL 133 (349)
T ss_pred EcCCC--CCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH-HcC-CC
Confidence 12111 122347888876 57899999999999999999986 99999999999999996666655 464 44
Q ss_pred eEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccCC
Q 013291 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243 (446)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~~ 243 (446)
++++.++|+ ..|..+++||+.+++++|.+++|+++++||++|.++|.+ +.+. ..|+.+|.+|++.+.++|.++|+|
T Consensus 134 ~vaivt~Pf--~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~-~af~~~N~iia~~i~~it~~ir~~ 209 (349)
T TIGR00065 134 TVAVVTKPF--KFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLN-DAFKVADDVLVRAVKGISELITKP 209 (349)
T ss_pred EEEEEeCCc--cccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHH-HHHHHHHHHHHHHHHhHHHhhccC
Confidence 555555665 567799999999999999999999999999999999977 7764 489999999999999999999999
Q ss_pred CCCcchHHhhhhccc
Q 013291 244 GQLNSDLRKLAVNLI 258 (446)
Q Consensus 244 ~~~n~~l~~l~~~L~ 258 (446)
|.+|.|+.++.+-|-
T Consensus 210 g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 210 GLINIDFADVRAVMS 224 (349)
T ss_pred CcCcCCHHHHHHHHh
Confidence 999999999998764
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.91 E-value=2e-24 Score=214.12 Aligned_cols=208 Identities=17% Similarity=0.278 Sum_probs=165.6
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCCCc
Q 013291 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQ 83 (446)
Q Consensus 4 Iitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~ 83 (446)
|..|.+|+||+.+-+++++. ++ . -...+.+|++...++.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-------------------------~---~~~~~a~ntD~~~L~~~~~-~~k~ 48 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-------------------------E---GVEFIAANTDAQALAKSKA-PNKI 48 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCC-CcEE
Confidence 67899999999999988651 10 0 0356888988876665442 1122
Q ss_pred ccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCce
Q 013291 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (446)
Q Consensus 84 ~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~ 163 (446)
++.++ .++..|+|++|+. |++..++..|.||+.+|.||.+ +|++|+|||||||+++.+++..+ +|+ +.
T Consensus 49 ~ig~~--~t~g~Gag~~~~~-----g~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g-~~ 116 (304)
T cd02201 49 QLGKE--LTRGLGAGGDPEV-----GRKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMG-AL 116 (304)
T ss_pred EcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcC-CC
Confidence 22221 1334578888774 5678889999999999999975 99999999999999998776655 565 35
Q ss_pred eEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccCC
Q 013291 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243 (446)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~~ 243 (446)
++++.++|+ ..|..+++||+++++++|.+++|.++++||++|.++|.+.+.+.. .|+.+|++|++.+.++|.++|+|
T Consensus 117 ~~~vvt~Pf--~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~ 193 (304)
T cd02201 117 TVAVVTKPF--SFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKP 193 (304)
T ss_pred EEEEEeCCc--cccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccC
Confidence 666666665 467779999999999999999999999999999999977777655 79999999999999999999999
Q ss_pred CCCcchHHhhhhccccc
Q 013291 244 GQLNSDLRKLAVNLIPF 260 (446)
Q Consensus 244 ~~~n~~l~~l~~~L~p~ 260 (446)
|.+|.|+.++.+.|-.-
T Consensus 194 g~invD~~dv~~vl~~~ 210 (304)
T cd02201 194 GLINLDFADVKTVMKNK 210 (304)
T ss_pred ccccCCHHHHHHHhccC
Confidence 99999999999988643
No 26
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.91 E-value=2.7e-24 Score=186.12 Aligned_cols=123 Identities=42% Similarity=0.861 Sum_probs=112.2
Q ss_pred CCccccccccccccccccccccccCHHHHHHhhccccccccccCCCCCccceeecccccCCChHHHHHHHHHhhccCCcc
Q 013291 261 PRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY 340 (446)
Q Consensus 261 p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 340 (446)
|++||++++++|+........++.++.||++++|+++++|++++|.+|+|||+++++||++.++++.+.+.+++.+..+.
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999888778889999999999999999999999999999999999999999999999999999998999
Q ss_pred cccccCCCceeeeeccCCCCCcce---eeeecCChhhHHHHHHHHH
Q 013291 341 FVEWIPNNVKSTVCDIPPTGLKMA---STFIGNSTSIQEMFRRVSE 383 (446)
Q Consensus 341 f~~w~p~~~~~~~~~~~~~~~~~s---~~~l~N~t~i~~~l~~l~~ 383 (446)
|++|+|+++|+++|+++|.....+ +++|+|+|+|.++|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999887776 9999999999999999864
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.90 E-value=1.5e-23 Score=210.98 Aligned_cols=205 Identities=21% Similarity=0.357 Sum_probs=163.9
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCCCc
Q 013291 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQ 83 (446)
Q Consensus 4 Iitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~ 83 (446)
|..|.+|+||+.+-+++++. ++ .+ ...+.++++...++.+... .+-
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~-------------------------~~---v~~iaiNTD~q~L~~~~a~-~ki 76 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI-------------------------EG---AETIAINTDAQHLAMIKAD-KKI 76 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEECCHHHHhcCCCC-cEE
Confidence 77899999999999988741 11 00 3468888888666544322 111
Q ss_pred ccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCce
Q 013291 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (446)
Q Consensus 84 ~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~ 163 (446)
++.++ ++...|+|++|. .|++..++..|.||+.+|.||. |+|++++|||||||+++.+++.+++ ++ ..
T Consensus 77 ~iG~~--~t~G~GaG~dp~-----~G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~l 144 (378)
T PRK13018 77 LIGKS--LTRGLGAGGDPE-----VGRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-AL 144 (378)
T ss_pred ecCCc--cCCCCCCCCChH-----HHHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CC
Confidence 11111 122346777755 5667888889999999999997 8999999999999999999999987 44 55
Q ss_pred eEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccCC
Q 013291 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243 (446)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~~ 243 (446)
.+++++.|+ ..+...+..|+.+++++|.+++|.++++||++|.++| +.+.+. ..|+.+|++|++.+.++|.++|+|
T Consensus 145 tv~vVt~Pf--~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~ 220 (378)
T PRK13018 145 VVGVVTKPF--KFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKP 220 (378)
T ss_pred eEEEEEcCc--ccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccC
Confidence 678889997 3466789999999999999999999999999999998 666665 479999999999999999999999
Q ss_pred CCCcchHHhhhhccc
Q 013291 244 GQLNSDLRKLAVNLI 258 (446)
Q Consensus 244 ~~~n~~l~~l~~~L~ 258 (446)
|.+|.|+.++.+-|-
T Consensus 221 G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 221 SLINLDFADVKSVMK 235 (378)
T ss_pred CceecCHHHHHHHhc
Confidence 999999999998764
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.86 E-value=2.1e-21 Score=177.34 Aligned_cols=149 Identities=23% Similarity=0.360 Sum_probs=108.7
Q ss_pred CcccCCCceeeccCCCCCCC--cccccchhhhhH------HHHHHH-HHHHHhhcCCCCCceeeecCCCCcccCchHHHH
Q 013291 82 GQIFRPDNFVFGQSGAGNNW--AKGHYTEGAELI------DSVLDV-VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (446)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnn~--a~G~~~~g~~~~------e~~~d~-ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~ll 152 (446)
+-.|||+++..-++-..++. ...-|..|++.+ +++.|+ ||.++|+||.|||||++.++.+||| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 44567777655443222211 112234444443 455664 9999999999999999999999996 9999999
Q ss_pred HHHHhhcCCcee-EEEEEecCCCCCC-----ccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccch
Q 013291 153 SKIREEYPDRMM-LTFSVFPSPKVSD-----TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226 (446)
Q Consensus 153 e~l~d~yp~~~i-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N 226 (446)
|+|+|||||+.+ +.+++.+...... ...+.+|.++++.+|.++|++++|+.... +..+..+..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 5565554322111 22456899999999999999999996200 234456999
Q ss_pred HHHHHhhccCcccccC
Q 013291 227 HLISATMSGVTCCLRF 242 (446)
Q Consensus 227 ~iia~~i~~~t~~~R~ 242 (446)
+++|.+|+++|+|+|+
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999995
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.86 E-value=6.9e-22 Score=199.21 Aligned_cols=207 Identities=19% Similarity=0.294 Sum_probs=162.1
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCCCCCCccceeecCCCCCcccccccCCCC
Q 013291 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG 82 (446)
Q Consensus 3 EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~ 82 (446)
-|-.|.+|.||+.+-+++++.- +. + ...+.++++...+..+... .+
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~~-----~~----------------~------------v~fia~NTD~q~L~~~~a~-~k 60 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEEG-----IQ----------------G------------VEFIAANTDAQALLKSKAP-VK 60 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHcC-----CC----------------C------------ceEEEEeCcHHHHhcCCCC-eE
Confidence 3778999999999998886521 10 0 2358888887665543321 11
Q ss_pred cccCCCceeeccCCCCCCCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCc
Q 013291 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (446)
-++.++ ++...|+|++|. .|++..++..+.||+.++.||.+ +|++++|||||||.++ ++..+..+|+
T Consensus 61 i~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g-- 127 (384)
T PRK09330 61 IQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG-- 127 (384)
T ss_pred EEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC--
Confidence 111111 122347777766 67899999999999999999887 9999999999999999 5556666675
Q ss_pred eeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccC
Q 013291 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRF 242 (446)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~ 242 (446)
+++++|+|.+...|..+++||+.++|.+|.+++|.+++++|++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+|+
T Consensus 128 -~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i~~ 205 (384)
T PRK09330 128 -ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLITK 205 (384)
T ss_pred -CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555545678899999999999999999999999999999999877666544 7999999999999999999999
Q ss_pred CCCCcchHHhhhhccc
Q 013291 243 PGQLNSDLRKLAVNLI 258 (446)
Q Consensus 243 ~~~~n~~l~~l~~~L~ 258 (446)
||.+|.|+.++.+-|-
T Consensus 206 pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 206 PGLINLDFADVKTVMS 221 (384)
T ss_pred CCcccCCHHHHHHHHh
Confidence 9999999999988765
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.55 E-value=2.5e-15 Score=127.62 Aligned_cols=65 Identities=31% Similarity=0.575 Sum_probs=52.5
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCccccccccccccccCC----CCCCccceeecCCCCCc
Q 013291 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEAS----CGRFVPRAVLMDLEPGT 72 (446)
Q Consensus 2 ~EIitiq~Gq~gn~ig~~~w~~~~~E~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~llvD~e~~~ 72 (446)
|||||||+|+.+|+||+||||.| |..+. |.++.+....+++|+||++. ..+|+||+|++|++.+.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~----y~~~~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~l 69 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLP----YDPDEKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGL 69 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccc----cCccccCcccCCceEEecccCcCCCeeECCcEEEEecCCCc
Confidence 79999999999999999999988 76553 33222223468899999974 35899999999999985
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.42 E-value=9.3e-13 Score=130.53 Aligned_cols=150 Identities=18% Similarity=0.282 Sum_probs=127.3
Q ss_pred cccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCCccch
Q 013291 102 AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVE 181 (446)
Q Consensus 102 a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~ 181 (446)
+.+....|++..++..+.|+..++..| -++++.++|||||+|.++.+++.+++ .....++++++|+. .|...+
T Consensus 71 aGa~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r 143 (338)
T COG0206 71 AGANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPR 143 (338)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchH
Confidence 334478899999999999998888766 56899999999999999999999988 48888899999983 455577
Q ss_pred hhHHHHHHHHhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccccCCCCCcchHHhhhhccccc
Q 013291 182 PYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPF 260 (446)
Q Consensus 182 ~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~R~~~~~n~~l~~l~~~L~p~ 260 (446)
.-|+..++..|.+++|.+|+++|+.|.+... ...+ ...|...|.+++..+.+++..+--||..|.|+.++.+-+...
T Consensus 144 ~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~ 220 (338)
T COG0206 144 MENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGG 220 (338)
T ss_pred HHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcC
Confidence 7899999999999999999999999987653 2222 236788899999999999999999999999999999877663
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.45 E-value=8.8e-08 Score=81.27 Aligned_cols=113 Identities=26% Similarity=0.435 Sum_probs=85.2
Q ss_pred CcchHHhhhhcccccCCccccccccccccccccccccccCHHHHHH--hhccccccccccCCCCCccceeecccccCCCh
Q 013291 246 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ--QMWDAKNMMCAADPRHGRYLTASAMFRGKMST 323 (446)
Q Consensus 246 ~n~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 323 (446)
+|.|+.++.++|+|+| |+.++++|.... .+..+..++.. .++++++++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 3689999999999999 899999998752 34455666666 7888877776665543 776665 6778
Q ss_pred HHHHHHHHHhhccCC-cccccccC-CCceeeeeccCCCCCcceeeeecC-ChhhHHHHHHH
Q 013291 324 KEVDEQMINVQNKNS-SYFVEWIP-NNVKSTVCDIPPTGLKMASTFIGN-STSIQEMFRRV 381 (446)
Q Consensus 324 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~l 381 (446)
.++.+.+..++.+.. ..|+.|.| ..+++ ..+.+.++| +|+|...|+++
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~----------~~~~~~i~ni~t~i~~~~~~~ 118 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEEL----------GGDEIRVTVIATGIGSAFKRL 118 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcC----------CCCcEEEEEEecccCcccccc
Confidence 899988888876655 78899998 44332 145688999 99999988765
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.55 E-value=0.0016 Score=66.00 Aligned_cols=102 Identities=23% Similarity=0.161 Sum_probs=61.2
Q ss_pred ccCCCCCCCcccccchhhhhHHHHHHHHHHHHh----h-----c-CCCCCceeeecCCCCcccCchHHHHHHHHhhc---
Q 013291 93 GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE----N-----C-DCLQGFQVCHSLGGGTGSGMGTLLISKIREEY--- 159 (446)
Q Consensus 93 ~~~~~gnn~a~G~~~~g~~~~e~~~d~ir~~~E----~-----c-D~lqgf~v~~s~~GGtGSG~~s~lle~l~d~y--- 159 (446)
...|+|..-+.|.... ....+.+.+.|++.+. + . +.-=-++|++|++||||||+---++-.||+.+
T Consensus 101 ~~~GAgq~R~~GRla~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~ 179 (345)
T PF13809_consen 101 LSAGAGQIRALGRLAF-FSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQP 179 (345)
T ss_pred hhcCCCCcccchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhcc
Confidence 3457777666664322 1222334444444433 1 1 00002578999999999999998999999976
Q ss_pred --CCceeEEEEEecCCCCCC---ccchhhHHHHHHHHhhhc
Q 013291 160 --PDRMMLTFSVFPSPKVSD---TVVEPYNATLSVHQLVEN 195 (446)
Q Consensus 160 --p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~L~e~ 195 (446)
....|..+.++|...... .....-|+.=+|.+|.-.
T Consensus 180 ~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~ 220 (345)
T PF13809_consen 180 GQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYL 220 (345)
T ss_pred cCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHH
Confidence 455788899999622111 133345777777666543
No 34
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=67.87 E-value=11 Score=32.47 Aligned_cols=44 Identities=30% Similarity=0.592 Sum_probs=32.6
Q ss_pred CCcccCchHHHHHHHHhhcCC-ceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCe
Q 013291 141 GGTGSGMGTLLISKIREEYPD-RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADE 198 (446)
Q Consensus 141 GGtGSG~~s~lle~l~d~yp~-~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~ 198 (446)
+|-|.|+|..+++.||.++|+ ..|++... |++-+-.-|..-+|-
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT--------------Na~AT~~MlKaGA~~ 50 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT--------------NAIATSAMLKAGANE 50 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh--------------hHHHHHHHHHcCCCC
Confidence 466778999999999999998 67776654 666666666555543
No 35
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=64.39 E-value=24 Score=32.25 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCce-eeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHH
Q 013291 112 LIDSVLDVVRKEAENCDCLQGFQ-VCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190 (446)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~-v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 190 (446)
+...+.+.|+..+|+ |+. ++.+.+-|+. -.+..++-.|+.+||...+ .+++|+...+..--+ ..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~~--~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWNE--ANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS-H--HHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCCH--HHHHHHH
Confidence 334455667777774 433 4444444443 3355566678999997554 567897444332111 3344567
Q ss_pred HhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccc
Q 013291 191 QLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (446)
Q Consensus 191 ~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~ 240 (446)
.|.+.||-++.+....... +..|..-|+.+...-+.+.+-+
T Consensus 97 ~il~~aD~v~~vs~~~Y~~---------~~~~~~rn~fMvdhsd~~iavy 137 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYS---------PGQLQKRNRFMVDHSDGLIAVY 137 (177)
T ss_dssp HHHHH-SEEEESSSSB------------HHHHHHHHHHHHHHSSEEEEE-
T ss_pred HHHHhCCEEEEccCCCCCC---------HHHHHHHhHHHHhCCCeEEEEE
Confidence 7788899998886543221 1124556666666655555443
No 36
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=64.16 E-value=19 Score=30.13 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcc
Q 013291 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (446)
Q Consensus 111 ~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtG 144 (446)
+-.+++.+++++.+++.+.-+|+.++.+++|||-
T Consensus 38 ~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 38 ESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp SCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 3446677788888888888899999999999874
No 37
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=62.50 E-value=7.3 Score=33.47 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeecCCCCc
Q 013291 114 DSVLDVVRKEAENCDCLQGFQVCHSLGGGT 143 (446)
Q Consensus 114 e~~~d~ir~~~E~cD~lqgf~v~~s~~GGt 143 (446)
+...++|+..+++++. +|..++.++ |||
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gss 69 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSA 69 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CCh
Confidence 3456788888999999 999999999 776
No 38
>PLN02847 triacylglycerol lipase
Probab=61.89 E-value=9.4 Score=41.27 Aligned_cols=62 Identities=27% Similarity=0.332 Sum_probs=42.6
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHh--hcCCceeEEEE
Q 013291 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE--EYPDRMMLTFS 168 (446)
Q Consensus 103 ~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d--~yp~~~i~~~~ 168 (446)
+|++...+.+.+.+...|++.++++...+-+.+-||+|||+. +.+.-.|+. .+++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVA----ALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTA----ALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHH----HHHHHHHhcCCCCCCceEEEec
Confidence 455555667777777888888999988888888999998763 444444554 45555555554
No 39
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=60.95 E-value=15 Score=31.96 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=37.5
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhc
Q 013291 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (446)
Q Consensus 103 ~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~y 159 (446)
+|++...+.+...+...+++...++..-+-+.+-||+||+. +..+...++...
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~~ 53 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGRG 53 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhcc
Confidence 36666677778888888888777777777788889998765 444455555543
No 40
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=60.49 E-value=28 Score=29.31 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeecCCCCcc
Q 013291 113 IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (446)
Q Consensus 113 ~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtG 144 (446)
.+++.+++++.+++.+.=+|+.|+.++-|||-
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45677788888887776789999999999985
No 41
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=57.65 E-value=13 Score=34.92 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=42.0
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013291 100 NWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (446)
Q Consensus 100 n~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (446)
..-+|++.....+.+.+...++...+++...+-+..-||+|||. ++.+.-.|+..++.
T Consensus 98 ~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGai----A~l~a~~l~~~~~~ 155 (229)
T cd00519 98 KVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGAL----ASLLALDLRLRGPG 155 (229)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHHH----HHHHHHHHHhhCCC
Confidence 34567777777788888888888888887777788889998764 45555556665433
No 42
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=52.70 E-value=31 Score=29.08 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeecCCCCcc
Q 013291 113 IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (446)
Q Consensus 113 ~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtG 144 (446)
.+++.+++++.+++.+.-+|+.++.++-|||-
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 45566777777888777789999999998874
No 43
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=44.01 E-value=78 Score=31.97 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=57.1
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCC-CCccchhhHHH
Q 013291 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV-SDTVVEPYNAT 186 (446)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~-~~~~~~~yN~~ 186 (446)
...+.+.++.+.|+... +..+||.|+|+.. | =-.++.+|+.+-...+|-.+++=+-.|.... +|.....++++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45677778888887765 4679999999776 4 2556777777555556666777778886443 34444444444
Q ss_pred HHHHHhhhcCCeeEEecCchhhh
Q 013291 187 LSVHQLVENADECMVLDNEALYD 209 (446)
Q Consensus 187 lsl~~L~e~sd~~i~~dN~~l~~ 209 (446)
. +..-.... .+++.=|+.++.
T Consensus 137 ~-~A~~~~~~-GV~V~f~~~i~~ 157 (335)
T PRK09461 137 Y-VAANYPIN-EVTLFFNNKLFR 157 (335)
T ss_pred H-HHcCCCCC-eEEEEECCEeec
Confidence 3 33222233 444444555544
No 44
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=39.47 E-value=13 Score=31.49 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=37.0
Q ss_pred cccccchhh-hhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013291 102 AKGHYTEGA-ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (446)
Q Consensus 102 a~G~~~~g~-~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (446)
..|++..-. ...+.+.+.|++..++.....-...=||+||| ++..+.-.+....+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 345554445 66778888888888776655555667898765 556666666665544
No 45
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=36.91 E-value=40 Score=27.48 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=38.9
Q ss_pred ecCChhhHHHHHH-------HHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 013291 368 IGNSTSIQEMFRR-------VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425 (446)
Q Consensus 368 l~N~t~i~~~l~~-------l~~~~~~m~~kkAflh~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (446)
++|.++|...|.. +++.-.++-.+|+|+-.... .-.+..||+..|+.+..+|.+=
T Consensus 28 IanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQd---kL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 28 IANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQD---KLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888865 56777777788855432221 1346899999999999999754
No 46
>PRK13660 hypothetical protein; Provisional
Probab=36.52 E-value=2e+02 Score=26.45 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCCce-eeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHH
Q 013291 112 LIDSVLDVVRKEAENCDCLQGFQ-VCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190 (446)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~-v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 190 (446)
+...+.+.|+..+|+ |+. ++.+..=|+- =.+.-++-.||.+||...+ .+++|+...++.--+ ..-.-+.
T Consensus 27 IK~aL~~~l~~~~e~-----G~~wfi~ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~e--~~q~~y~ 96 (182)
T PRK13660 27 IKKAIKRKLIALLEE-----GLEWVIISGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENWNE--ANQEKLA 96 (182)
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCCH--HHHHHHH
Confidence 334455666666663 332 2222222221 1255567779999997655 356787443331111 2223455
Q ss_pred HhhhcCCeeEEecCchhhhhhhcccCCCCCCcccchHHHHHhhccCcccc
Q 013291 191 QLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (446)
Q Consensus 191 ~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~iia~~i~~~t~~~ 240 (446)
.|.+.||-+..+...-- . .+..|..-|+.+...-+.+.+-+
T Consensus 97 ~i~~~aD~v~~vs~~~y--------~-~p~q~~~rn~fmv~~sd~~i~~Y 137 (182)
T PRK13660 97 NILKQADFVKSISKRPY--------E-SPAQFRQYNQFMLEHTDGALLVY 137 (182)
T ss_pred HHHHhCCEEEEecCCCC--------C-ChHHHHHHHHHHHHccCeEEEEE
Confidence 67778999998843211 0 01236667777777666665544
No 47
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=34.98 E-value=1.3e+02 Score=30.09 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=55.5
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHH
Q 013291 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187 (446)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (446)
...+.+..+.+.|++.+++ .+||.|+|+.. | =-.++..++.+-+. +|-.+++=+-.|....+..-......++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567777788888877663 78999999765 4 24456666655454 6666777778886443332333333333
Q ss_pred HHHHhhh--cCCeeEEecCchhhh
Q 013291 188 SVHQLVE--NADECMVLDNEALYD 209 (446)
Q Consensus 188 sl~~L~e--~sd~~i~~dN~~l~~ 209 (446)
.+....+ .....++|+ +.+++
T Consensus 133 ~~A~~~~~~~~gV~V~f~-~~i~~ 155 (323)
T cd00411 133 YVAANYDSRGRGVLVVFN-DRIFR 155 (323)
T ss_pred HHHcCcccCCCeEEEEEC-CEEec
Confidence 3333222 345566664 44544
No 48
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=34.88 E-value=1.3e+02 Score=29.94 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=51.8
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCC-CCCccchhhHHH
Q 013291 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNAT 186 (446)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (446)
...+.+..+.+.|++.+++ .+||.|+|+.. | --.++.+++.+-+..+|-.+++=+..|... ..|.....++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--T-me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--T-MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--T-HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--H-HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 4567777788888887744 89999999765 3 234555666655555566677778888643 344455555555
Q ss_pred HHHHHhhhcCCeeEEecCchhhh
Q 013291 187 LSVHQLVENADECMVLDNEALYD 209 (446)
Q Consensus 187 lsl~~L~e~sd~~i~~dN~~l~~ 209 (446)
....+-. ..-..++|+ +.++.
T Consensus 128 ~~A~~~~-~~GV~v~f~-~~i~~ 148 (313)
T PF00710_consen 128 RVAASPA-GPGVLVVFN-GRIYA 148 (313)
T ss_dssp HHHHSGG-TSSEEEEET-TEEEE
T ss_pred HHHhccc-CCceEEEeC-CCccc
Confidence 4444433 444555554 44544
No 49
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=32.69 E-value=1.6e+02 Score=30.61 Aligned_cols=91 Identities=20% Similarity=0.177 Sum_probs=58.1
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCC-CCCccchhhHHH
Q 013291 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNAT 186 (446)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (446)
+..+.|..+.+.|++.++ +..+||.|+|+.. | =-.++..|..+-+..|+-.+++=+-.|... .+|.....++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 456777778888888775 4469999999776 4 255666666654544666677777888643 345555555555
Q ss_pred HHHHHhhhcCCeeEEecCc
Q 013291 187 LSVHQLVENADECMVLDNE 205 (446)
Q Consensus 187 lsl~~L~e~sd~~i~~dN~ 205 (446)
..-.. ..+-..++|+++
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 44322 445667777665
No 50
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=32.56 E-value=42 Score=28.80 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcCC-CCCceeeecCCCCc
Q 013291 114 DSVLDVVRKEAENCDC-LQGFQVCHSLGGGT 143 (446)
Q Consensus 114 e~~~d~ir~~~E~cD~-lqgf~v~~s~~GGt 143 (446)
..+.++|++.+|+++. =+|+.++.++ ||+
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs 71 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA 71 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc
Confidence 3455778888888866 7899999999 665
No 51
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=32.36 E-value=86 Score=28.05 Aligned_cols=48 Identities=17% Similarity=0.450 Sum_probs=33.5
Q ss_pred CChhhHHHHHHHHHHHHhhc--ccccccccccCCCCChhhHHHHHHHHHHHHHHHH
Q 013291 370 NSTSIQEMFRRVSEQFTAMF--RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423 (446)
Q Consensus 370 N~t~i~~~l~~l~~~~~~m~--~kkAflh~Y~~~Gmee~eF~ea~~~l~~l~~~Y~ 423 (446)
+...+...|++++..+.-+| .|+ .||+++ |-. |..-.+.++.+.++..
T Consensus 12 ~~~~~~~~Ln~~lAd~~~Ly~k~~~--~HWnV~-G~~---F~~lHe~~ee~y~el~ 61 (156)
T COG0783 12 DRKKIAEALNQLLADLYVLYLKTHN--YHWNVK-GPN---FFALHEKLEELYEELA 61 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--ccccee-Ccc---HHHHHHHHHHHHHHHH
Confidence 44789999999999999988 456 999997 644 4444444444444443
No 52
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=31.50 E-value=48 Score=31.34 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=22.3
Q ss_pred eeecCCCCcccCchHHHHHHHHhhcCCc
Q 013291 135 VCHSLGGGTGSGMGTLLISKIREEYPDR 162 (446)
Q Consensus 135 v~~s~~GGtGSG~~s~lle~l~d~yp~~ 162 (446)
++-+++||.|||=++ ++..|.+.++..
T Consensus 9 iiIgIaG~SgSGKTT-va~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKTT-VAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHHH-HHHHHHHHhCcC
Confidence 567899999999854 888999998755
No 53
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=30.88 E-value=92 Score=31.53 Aligned_cols=41 Identities=29% Similarity=0.521 Sum_probs=29.0
Q ss_pred HHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEE
Q 013291 122 KEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTF 167 (446)
Q Consensus 122 ~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~ 167 (446)
+.++.+..+.|+.+..++|||+| ..+=..+. .||+...+++
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 34667777888999999998876 43333444 8998766655
No 54
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=28.64 E-value=1.4e+02 Score=26.23 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=38.8
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEE
Q 013291 100 NWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLT 166 (446)
Q Consensus 100 n~a~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~ 166 (446)
-++..++ .|...-+.+.+.+...++.-|+=+|+.|+.++-|||-+-.+++++ .+.|...+++
T Consensus 30 v~~v~~~-~~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~----~~~~~~~via 91 (143)
T COG2893 30 VEAVDFV-PGEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLA----MEGPRVEVIA 91 (143)
T ss_pred eEEEEee-cCCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHH----hhCCCceEEe
Confidence 3444443 233444455566666677677779999999999998755555444 5556654443
No 55
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=28.24 E-value=2e+02 Score=22.19 Aligned_cols=54 Identities=13% Similarity=0.259 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhc--CCCCCceeeecCC----CCcccCchHHHHHHHHhhcCCceeEEEEEec
Q 013291 115 SVLDVVRKEAENC--DCLQGFQVCHSLG----GGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171 (446)
Q Consensus 115 ~~~d~ir~~~E~c--D~lqgf~v~~s~~----GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P 171 (446)
+..+.++..++.| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.--+
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~~ 69 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE--
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeecC
Confidence 3444455555544 3457888999998 654 7788888887766566666554433
No 56
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=28.13 E-value=1.3e+02 Score=30.15 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeecCCCCcc
Q 013291 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (446)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtG 144 (446)
-.+++.++++..+++.+.-+|+.++.++-|||-
T Consensus 41 ~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 41 NAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 345667777778888777789999999999985
No 57
>PF03283 PAE: Pectinacetylesterase
Probab=27.58 E-value=1e+02 Score=31.43 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=33.6
Q ss_pred ccchhhhhHHHHHHHHHHH-HhhcCCCCCceeeecCCCCcccCchHHH-HHHHHhhcCC
Q 013291 105 HYTEGAELIDSVLDVVRKE-AENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPD 161 (446)
Q Consensus 105 ~~~~g~~~~e~~~d~ir~~-~E~cD~lqgf~v~~s~~GGtGSG~~s~l-le~l~d~yp~ 161 (446)
.|-.|....+.+++.|... +.+. +-+.+..+.+||+| +.+ ++.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~a---~~vlltG~SAGG~g----~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPNA---KQVLLTGCSAGGLG----AILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCccc---ceEEEeccChHHHH----HHHHHHHHHHHhcc
Confidence 4556888888887776655 4433 34467667776664 444 7889999995
No 58
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=27.43 E-value=48 Score=26.90 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=21.0
Q ss_pred CCceeeecCCCCcccCchHHHHHHHHh
Q 013291 131 QGFQVCHSLGGGTGSGMGTLLISKIRE 157 (446)
Q Consensus 131 qgf~v~~s~~GGtGSG~~s~lle~l~d 157 (446)
.+|.|+.+...|+|+.+-+.|++.|.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 477999999999988888888777644
No 59
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=27.26 E-value=1.9e+02 Score=29.24 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=57.1
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCC-CCCccchhhHHH
Q 013291 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNAT 186 (446)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (446)
...+.+..+.+.|+...++ .+||.|+|+.. | =-.++..|+.+-+. +|-.+++=+-.|... .+|....-++++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--T-me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--T-MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--h-HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567777888888877763 78999999776 4 24566666655444 666677777888643 334444444444
Q ss_pred HHHHHhhhc-----CCeeEEecCchhhh
Q 013291 187 LSVHQLVEN-----ADECMVLDNEALYD 209 (446)
Q Consensus 187 lsl~~L~e~-----sd~~i~~dN~~l~~ 209 (446)
. .....+. -..++++=|+.|++
T Consensus 132 ~-~A~~~~~~~~i~~~gV~v~f~~~i~~ 158 (336)
T TIGR00519 132 R-AATEYIAEVTVCMHGVTLDFNCRLHR 158 (336)
T ss_pred H-HHcCccccccccCceeEEEccCeEee
Confidence 4 3332221 22455555666655
No 60
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=26.97 E-value=29 Score=16.71 Aligned_cols=8 Identities=75% Similarity=1.427 Sum_probs=5.8
Q ss_pred hcccccCC
Q 013291 255 VNLIPFPR 262 (446)
Q Consensus 255 ~~L~p~p~ 262 (446)
..|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 35788887
No 61
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=25.84 E-value=38 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.443 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHH--hhcccccccccccCCCCChhh
Q 013291 374 IQEMFRRVSEQFT--AMFRRKAFLHWYTGEGMDEME 407 (446)
Q Consensus 374 i~~~l~~l~~~~~--~m~~kkAflh~Y~~~Gmee~e 407 (446)
|...+.+|.+-+. +=|..-.||+||+.|+.||+.
T Consensus 97 vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~ 132 (167)
T COG1528 97 VTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK 132 (167)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 3444444443333 235667899999999987643
No 62
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=25.80 E-value=2.3e+02 Score=28.38 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=54.9
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCC-CCCccchhhHHH
Q 013291 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNAT 186 (446)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (446)
...+.+..+.+.|+..+.. +..+||.|+|+.. | =-.++.+++.+-+..+|-.+++=+-.|... .+|.....++++
T Consensus 57 ~t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTD--T-meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av 132 (323)
T smart00870 57 MTPADWLKLAKRINEALAD-DGYDGVVVTHGTD--T-LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHhcc-CCCCEEEEecCCc--c-HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHH
Confidence 4456666677777665433 5689999999776 4 244566666555555666677777888643 334444444444
Q ss_pred HHHHHhhh--cCCeeEEecCchhhh
Q 013291 187 LSVHQLVE--NADECMVLDNEALYD 209 (446)
Q Consensus 187 lsl~~L~e--~sd~~i~~dN~~l~~ 209 (446)
.. ..-.+ ..-..++| |+.++.
T Consensus 133 ~~-A~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 133 RV-AASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred HH-HcCcccCCCEEEEEE-CCEeee
Confidence 33 22222 23345555 555654
No 63
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=25.49 E-value=4.4e+02 Score=27.67 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCC---CCccchhhHHHHHH
Q 013291 113 IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV---SDTVVEPYNATLSV 189 (446)
Q Consensus 113 ~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~---~~~~~~~yN~~lsl 189 (446)
.+...+.|...+. .+.++++-|+.+.+.|+|+++.+.|++.|+.-=-...++..---|.... ...+..+.|--...
T Consensus 152 ~~~Yi~~l~~~id-~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l~ 230 (456)
T PRK15414 152 RDAYVDHLFGYIN-VKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDTR 230 (456)
T ss_pred HHHHHHHHHHhcc-cccCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHHHHH
Confidence 3444444444432 1335799999999999999999988655544311222222222232111 11122232322222
Q ss_pred HHh-hhcCCeeEEecCch
Q 013291 190 HQL-VENADECMVLDNEA 206 (446)
Q Consensus 190 ~~L-~e~sd~~i~~dN~~ 206 (446)
..+ ...+|+.+.+|-|+
T Consensus 231 ~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 231 NAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHcCCCEEEEECCCc
Confidence 222 23489999998775
No 64
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=25.02 E-value=1.6e+02 Score=30.11 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHH
Q 013291 110 AELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSV 189 (446)
Q Consensus 110 ~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl 189 (446)
.++.+++.+.++.+.|.-..--|..+..-.++|.+.|+|.-|+-.+.-++ .|. .+..-.++-|
T Consensus 216 ~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l----------~~G-------i~iV~~~~~l 278 (378)
T COG1929 216 PEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL----------KSG-------IEIVLEATNL 278 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc----------ccc-------HHHHHHHhCH
Confidence 57888888899999888777778888888888888899999887765332 222 2334456678
Q ss_pred HHhhhcCCeeEE----ecCchhh
Q 013291 190 HQLVENADECMV----LDNEALY 208 (446)
Q Consensus 190 ~~L~e~sd~~i~----~dN~~l~ 208 (446)
....+-+|+||. +|++++.
T Consensus 279 e~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 279 EDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred HHhhccCCEEEeCCCcccccccC
Confidence 888889999996 5677764
No 65
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=24.60 E-value=2.5e+02 Score=29.33 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=58.0
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCC-CCCccchhhHHH
Q 013291 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNAT 186 (446)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (446)
+..+.|..+.+.|++.++. ..+||.|+|+.. | =-.++..|..+- ..|+-.+++=+-.|... .+|.....++++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--T-M~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--T-MHYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--h-HHHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 4567788888888888764 589999999776 5 245566666544 45666667777888643 345445445555
Q ss_pred HHHHHhhhcCCeeEEecCc
Q 013291 187 LSVHQLVENADECMVLDNE 205 (446)
Q Consensus 187 lsl~~L~e~sd~~i~~dN~ 205 (446)
..-. ...+-..++|+.+
T Consensus 207 ~~A~--~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 LAAT--SDIAEVVVVMHGT 223 (419)
T ss_pred HHHh--CCCCcEEEEECCc
Confidence 4332 3445667777654
No 66
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=24.12 E-value=1e+02 Score=30.14 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=30.2
Q ss_pred CCCcccccchhhhhHHHHH-HHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEE
Q 013291 99 NNWAKGHYTEGAELIDSVL-DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSV 169 (446)
Q Consensus 99 nn~a~G~~~~g~~~~e~~~-d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v 169 (446)
-.|+-|||..+.+-.++.. .++...+|+++-=.| .-+-++|.||| |++-. +...| +..+.++.+
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~~~~----~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GLAIY----AAERY-GCHVTGITL 93 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HHHHH----HHHHH---EEEEEES
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HHHHH----HHHHc-CcEEEEEEC
Confidence 4566677777766555555 467778888864444 45668887776 44433 44556 455555443
No 67
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=23.80 E-value=3e+02 Score=29.04 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCC---CCCccchhhHHHHH
Q 013291 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK---VSDTVVEPYNATLS 188 (446)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~---~~~~~~~~yN~~ls 188 (446)
..+...+.|+..+..-..+.++.|+.+.+.|+|+.+.+.+++.|- ..++..-..|... ....+....+..|.
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~ 232 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLA 232 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHH
Confidence 445555555555443346778999999999998888887777753 3444444344321 11333344444332
Q ss_pred HHHhhhcCCeeEEecCch
Q 013291 189 VHQLVENADECMVLDNEA 206 (446)
Q Consensus 189 l~~L~e~sd~~i~~dN~~ 206 (446)
..-....+|+.+-+|.|+
T Consensus 233 ~~v~~~~aDlgia~DgDa 250 (464)
T COG1109 233 KAVKEHGADLGIAFDGDA 250 (464)
T ss_pred HHHHhcCCCEEEEecCCC
Confidence 222223699999998877
No 68
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=23.38 E-value=2.9e+02 Score=28.91 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHH
Q 013291 113 IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIR 156 (446)
Q Consensus 113 ~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~ 156 (446)
.+...+.|+..+. ...+++.|+.+.+.|+|+++.+.+++.|-
T Consensus 158 ~~~Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~~~~~~ll~~lG 199 (448)
T PRK14318 158 TDRYLRHLLGALP--TRLDGLKVVVDCAHGAASGVAPEAYRAAG 199 (448)
T ss_pred HHHHHHHHHHHhc--cccCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 3444444544443 24579999999999999999999998873
No 69
>PTZ00489 glutamate 5-kinase; Provisional
Probab=22.91 E-value=3.3e+02 Score=26.48 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=29.0
Q ss_pred HHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHHhhhcCCeeEEecCc
Q 013291 155 IREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE 205 (446)
Q Consensus 155 l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~ 205 (446)
..+.+.+..+.+..+++....-....+..|+.-++..|.+. .++|+=|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44455555555666666533223334455888888888886 56677443
No 70
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=22.81 E-value=2.8e+02 Score=28.97 Aligned_cols=88 Identities=13% Similarity=0.222 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCC---ccchhhHHHHH
Q 013291 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD---TVVEPYNATLS 188 (446)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~---~~~~~yN~~ls 188 (446)
..+...+.|.+.+.. ..+++-|+.+...|+|+++.+.+++.|-. .+...--.|...... .+..+-|--..
T Consensus 145 ~~~~Y~~~l~~~i~~--~~~~lkVvvd~~~G~~~~~~~~ll~~lG~-----~v~~i~~~~d~~F~~~~p~p~~~~~l~~l 217 (443)
T cd03089 145 ILPDYIDRLLSDIKL--GKRPLKVVVDAGNGAAGPIAPQLLEALGC-----EVIPLFCEPDGTFPNHHPDPTDPENLEDL 217 (443)
T ss_pred CHHHHHHHHHHhccc--ccCCCeEEEECCCCchHHHHHHHHHHCCC-----EEEEecCCCCCCCCCCCcCCCCHHHHHHH
Confidence 344444445444421 12799999999999998998888887633 222332223221111 11111122111
Q ss_pred HHHhh-hcCCeeEEecCch
Q 013291 189 VHQLV-ENADECMVLDNEA 206 (446)
Q Consensus 189 l~~L~-e~sd~~i~~dN~~ 206 (446)
...+. ..+|+.+.+|-|+
T Consensus 218 ~~~v~~~~adlgia~D~Da 236 (443)
T cd03089 218 IAAVKENGADLGIAFDGDG 236 (443)
T ss_pred HHHHHHcCCCEEEEecCCc
Confidence 22222 2389999998776
No 71
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=22.22 E-value=1e+02 Score=23.11 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=19.2
Q ss_pred ccCchHHHHHHHHhhcCCceeEE
Q 013291 144 GSGMGTLLISKIREEYPDRMMLT 166 (446)
Q Consensus 144 GSG~~s~lle~l~d~yp~~~i~~ 166 (446)
|-|+|+.|+..+.+.++++.+..
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEEE
Confidence 46899999999999998877653
No 72
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=21.86 E-value=2.5e+02 Score=28.53 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=37.0
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013291 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (446)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~ 161 (446)
.++.+.|...++|+...+.-+ .|+.|++||--||+-=.|+-.+.+++..
T Consensus 8 ~~~nV~eA~~eRl~~if~~f~-----~VcVSFSGGKDS~lmLhL~~~~ar~~~~ 56 (407)
T COG3969 8 LDENVLEAAIERLEWIFNTFP-----RVCVSFSGGKDSGLMLHLVAEVARENGR 56 (407)
T ss_pred CcchHHHHHHHHHHHHHhcCC-----eEEEEecCCCchhHHHHHHHHHHHHhCC
Confidence 456778888999999988766 5699999999999976665555555443
No 73
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.83 E-value=60 Score=19.82 Aligned_cols=13 Identities=38% Similarity=1.025 Sum_probs=9.2
Q ss_pred CCCcccCchHHHH
Q 013291 140 GGGTGSGMGTLLI 152 (446)
Q Consensus 140 ~GGtGSG~~s~ll 152 (446)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 5788888876543
No 74
>PLN02408 phospholipase A1
Probab=21.79 E-value=1.8e+02 Score=29.83 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHhhcCC--CCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCCc
Q 013291 111 ELIDSVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178 (446)
Q Consensus 111 ~~~e~~~d~ir~~~E~cD~--lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~ 178 (446)
.+.+.+.+.|++.+++... ..-...-||+||+ ++...+-.|+..++..+.+.+..|-.+..++.
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~ 244 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGNR 244 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCcccH
Confidence 4667788888888887653 2335566788765 55666666777776655555555555555653
No 75
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=21.74 E-value=24 Score=18.17 Aligned_cols=12 Identities=50% Similarity=1.199 Sum_probs=5.6
Q ss_pred CCCCcccccchhh
Q 013291 98 GNNWAKGHYTEGA 110 (446)
Q Consensus 98 gnn~a~G~~~~g~ 110 (446)
++.||.|.+ +|+
T Consensus 1 g~~WAvGh~-Mgk 12 (14)
T PF02044_consen 1 GPQWAVGHF-MGK 12 (14)
T ss_dssp --TCHHHCT----
T ss_pred CCccceeee-ecc
Confidence 467888876 454
No 76
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=20.67 E-value=34 Score=29.73 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=18.1
Q ss_pred ccccccccccCCCCChhhHHHHHHHHHHHH
Q 013291 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419 (446)
Q Consensus 390 ~kkAflh~Y~~~Gmee~eF~ea~~~l~~l~ 419 (446)
+|.+|| ++-||.++|++||+....+-.
T Consensus 25 ~k~~FL---~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 25 KKIAFL---ESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHH---HHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHH---HcCCCCHHHHHHHHHhcCCcc
Confidence 567777 345999999999999876654
No 77
>PLN02371 phosphoglucosamine mutase family protein
Probab=20.44 E-value=2.7e+02 Score=30.42 Aligned_cols=73 Identities=14% Similarity=0.279 Sum_probs=42.5
Q ss_pred CCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCC---CCccchhhHHHHHHHHh-hhcCCeeEEecCc
Q 013291 130 LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV---SDTVVEPYNATLSVHQL-VENADECMVLDNE 205 (446)
Q Consensus 130 lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~---~~~~~~~yN~~lsl~~L-~e~sd~~i~~dN~ 205 (446)
++++-|+.+.+.|+|+++.+.+++.|--+ .+...-.-|.... ......+.|--...... ...+|+.+.+|-|
T Consensus 261 ~~~lkIvvD~~nGag~~~~~~lL~~LG~~----v~~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgD 336 (583)
T PLN02371 261 LEGFKIVVDAGNGAGGFFAEKVLEPLGAD----TSGSLFLEPDGMFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDTD 336 (583)
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCC----eEeeccCCCCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 57999999999999999999898877322 1111111121111 11222233333333333 3348999999877
Q ss_pred h
Q 013291 206 A 206 (446)
Q Consensus 206 ~ 206 (446)
+
T Consensus 337 a 337 (583)
T PLN02371 337 V 337 (583)
T ss_pred c
Confidence 6
No 78
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=20.26 E-value=4.5e+02 Score=27.47 Aligned_cols=89 Identities=13% Similarity=0.266 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCceeEEEEEecCCCCCC---ccchhhHHHH
Q 013291 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSD---TVVEPYNATL 187 (446)
Q Consensus 111 ~~~e~~~d~ir~~~E~cD~lqgf~v~~s~~GGtGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~---~~~~~yN~~l 187 (446)
+..+...+.|.+.+.- ..++++.|+.+.+.|+|+++.+.+++.|. ..++..--.|...... .+..+ -.+-
T Consensus 144 ~~~~~Y~~~l~~~i~~-~~i~~lkVvvd~~~Ga~~~~~~~ll~~lg-----~~vv~~~~~~d~~Fp~~~p~P~~~-~~l~ 216 (445)
T PRK09542 144 DVLADYAAFLRSLVDL-SGIRPLKVAVDAGNGMGGHTVPAVLGGLP-----ITLLPLYFELDGTFPNHEANPLDP-ANLV 216 (445)
T ss_pred ChHHHHHHHHHHhccc-ccCCCCEEEEECCCCchhHHHHHHHHhCC-----CEEEEEecCcCCCCCCCCcCCCCH-HHHH
Confidence 3344444545444421 23579999999999999888888887552 2232222222211111 11112 1122
Q ss_pred HHHHhh--hcCCeeEEecCch
Q 013291 188 SVHQLV--ENADECMVLDNEA 206 (446)
Q Consensus 188 sl~~L~--e~sd~~i~~dN~~ 206 (446)
.+..+. ..+|+.+.+|.|+
T Consensus 217 ~l~~~v~~~~adlGia~DgD~ 237 (445)
T PRK09542 217 DLQAFVRETGADIGLAFDGDA 237 (445)
T ss_pred HHHHHHHHcCCCEEEEECCCC
Confidence 333322 2389999998776
Done!