BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013292
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 207/319 (64%), Gaps = 7/319 (2%)
Query: 26 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLL 85
IGVCYG ++LP P +V L K +NI +R+YD N L+A N+ +++++ +P SD+
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 86 PFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKA 145
A S A W++ +++ Y+P+ YI VG E+ +D + ++PAM+N++ AL A
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSD-LAQYILPAMRNIYNALSSA 119
Query: 146 GLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205
GL +IKVS+ GVL S+PPSAGAF+S+ +L P+++FLA N +P ++++YPY++Y
Sbjct: 120 GLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSY 179
Query: 206 RDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETG 265
+P +SL YALF +S V+ + Y N+FDA +D+++ AL + + ++V+E+G
Sbjct: 180 TGNPGQISLPYALFTASGVVVQ-DGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESG 238
Query: 266 WPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKPGLES 325
WPS G E A+ NAQ YN NLIRHV GTP + G+E++ YIF +FNEN+K G
Sbjct: 239 WPSAGGGAE--ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAG-GI 293
Query: 326 ERNWGLFYPDQTSVYNLDF 344
E+N+GLFYP++ VY + F
Sbjct: 294 EQNFGLFYPNKQPVYQISF 312
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 255 bits (651), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 201/322 (62%), Gaps = 11/322 (3%)
Query: 26 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLL 85
IGVCYG+ A++LP+ V +L +NIK +RIY + V A + +E+++ +PN DL
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 86 PFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNS--SSLVVPAMQNVFTALK 143
A SNA+ W++++I ++P K YI VG EV ++ + V PAM+N++ AL
Sbjct: 63 ALAN-PSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 144 KAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYY 203
AGL +IKVS++ G+L+ ++PP F + F+ P++ FLA + P + +IYPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 204 AYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTE 263
+ D+ N V L YALF +TG Y N+FDA +DS+YFA L + I+I+V+E
Sbjct: 182 GHIDNTNAVPLSYALFNQQRR---NDTG--YQNLFDALVDSMYFATEKLGGQNIEIIVSE 236
Query: 264 TGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKPGL 323
+GWPS+G P AAT NA+ Y TNLI HV +GTP K G+ ++ Y+F++F+EN K G
Sbjct: 237 SGWPSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGE 293
Query: 324 ESERNWGLFYPDQTSVYNLDFS 345
SE+++GLF PDQ Y L+F+
Sbjct: 294 ASEKHFGLFNPDQRPKYQLNFN 315
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 196/319 (61%), Gaps = 13/319 (4%)
Query: 26 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLL 85
IGVCYG ++LP+ V QL + I +RIY ++ Q L A N+G+ L++ I N L
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 86 PFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKA 145
A SNA SW++N++ PYYPA I YI G EV S ++PAM+N+ A A
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQS---ILPAMRNL-NAALSA 116
Query: 146 GLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205
IKVS++ ++ SFPPSAG F ++ ++ + LA +P + ++YPY+AY
Sbjct: 117 AGLGAIKVSTSIRFDEVANSFPPSAGVFKNA---YMTDVARLLASTGAPLLANVYPYFAY 173
Query: 206 RDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETG 265
RD+P ++SL+YA FQ + V D N GL YT++FDA +D++Y AL +K++V+E+G
Sbjct: 174 RDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESG 233
Query: 266 WPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKPGLES 325
WPS G AA+ NA+ YN LI HV GTP KR E L+ YIF++FNEN+K G +
Sbjct: 234 WPSAGG---FAASAGNARTYNQGLINHV--GGGTPKKR-EALETYIFAMFNENQKTGDAT 287
Query: 326 ERNWGLFYPDQTSVYNLDF 344
ER++GLF PD++ YN+ F
Sbjct: 288 ERSFGLFNPDKSPAYNIQF 306
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 200/322 (62%), Gaps = 11/322 (3%)
Query: 26 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLL 85
IGVCYG+ A++LP+ V +L +NIK +RIY + V A + +E+++ +PN DL
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 86 PFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNS--SSLVVPAMQNVFTALK 143
A SNA+ W++++I ++P K YI VG EV ++ + V PAM+N++ AL
Sbjct: 63 ALAN-PSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 144 KAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYY 203
AGL +IKVS++ G+L+ ++PP F + F+ P++ FLA + P + +IYPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 204 AYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTE 263
+ D+ N V L YALF +TG Y N+FDA +DS+YFA L + I+I+V+
Sbjct: 182 GHIDNTNAVPLSYALFNQQRR---NDTG--YQNLFDALVDSMYFATEKLGGQNIEIIVSA 236
Query: 264 TGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKPGL 323
+GWPS+G P AAT NA+ Y TNLI HV +GTP K G+ ++ Y+F++F+EN K G
Sbjct: 237 SGWPSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGE 293
Query: 324 ESERNWGLFYPDQTSVYNLDFS 345
SE+++GLF PDQ Y L+F+
Sbjct: 294 ASEKHFGLFNPDQRPKYQLNFN 315
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 208/324 (64%), Gaps = 13/324 (4%)
Query: 26 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLL 85
+GVCYG ++LP +V L K+ NI +RIYD N VL+A + +EL++G+PNSDL
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 86 PFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSL---VVPAMQNVFTAL 142
SNA SW++ ++ ++ + + YI VG E++ ++ L V+PAM+N+ A+
Sbjct: 62 SLTN-PSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 143 KKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPY 202
+ AGL +IKVS+ L ++ S+PPSAGAF +L P++ FL+ +SP + +IYPY
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 203 YAYRDSPNNVSLDYALFQSSSEVI-DPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMV 261
+ Y +P ++SL YALF S S V+ D G Y N+FDA +D++Y AL + +++++V
Sbjct: 181 FTYAGNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEVVV 238
Query: 262 TETGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKP 321
+E+GWPS G+ AAT DN + Y +NLI+HV GTP + ++ Y+F++F+EN+K
Sbjct: 239 SESGWPSAGA---FAATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDENKKQ 293
Query: 322 GLESERNWGLFYPDQTSVYNLDFS 345
E E+++GLF+P++ YNL+FS
Sbjct: 294 P-EVEKHFGLFFPNKWQKYNLNFS 316
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 227 bits (579), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 129/319 (40%), Positives = 189/319 (59%), Gaps = 13/319 (4%)
Query: 26 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLL 85
IGVCYG +A++LP V + K + IK +R+Y N L+A TG+ +++G PN L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 86 PFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKA 145
A + A SW+K++I Y P Y+ VG EV + +VPAM+NV AL A
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGGATRN---LVPAMKNVHGALVAA 116
Query: 146 GLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205
GL IKV+++ S +L PPSAG+F A F+ P+++FLA +P M +IYPY A+
Sbjct: 117 GL-GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAW 175
Query: 206 RDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETG 265
+P+ + + YALF +S V+ + Y N+FD +D+ Y A+ ++K++V+E+G
Sbjct: 176 AYNPSAMDMGYALFNASGTVVR-DGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESG 234
Query: 266 WPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKPGLES 325
WPS G AATP NA+ YN +LI HV GTP G ++ YIF++FNEN+K
Sbjct: 235 WPSGGG---TAATPANARFYNQHLINHV--GRGTPRHPG-AIETYIFAMFNENQKDS-GV 287
Query: 326 ERNWGLFYPDQTSVYNLDF 344
E+NWGLFYP+ VY ++F
Sbjct: 288 EQNWGLFYPNMQHVYPINF 306
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 366 TWCIASTKASEADLQNALDWACGPGNVDCSAIQPSQPCYEPDTLLSHASFAINSYYQQNG 425
+WC+ S+ L +++AC G +DC IQP C+EP+T+ +HA++ +N YYQ G
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70
Query: 426 ATDIACSFGGNGVKVDKNPS 445
C F + NPS
Sbjct: 71 RNSWNCDFSQTATLTNTNPS 90
>pdb|1GXO|A Chain A, Mutant D189a Of Family 10 Polysaccharide Lyase From
Cellvibrio Cellulosa In Complex With Trigalaturonic Acid
Length = 332
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 90 FQSNADSWLKN----SILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKA 145
+Q N W KN S+ + I GA +TE + A++KA
Sbjct: 43 YQQNNGGWPKNLDYNSVGNGGGGNESGTIANGATITEMVFLAEVYKSGGNTKYRDAVRKA 102
Query: 146 GLHKRIKVSSTHSLGVLSRSFPPSAG-----AFNSSHAHFLKPLLEFLADNQSPFMIDIY 200
V+S +S G L + +P G FN + + +L+F A+ ++PF D++
Sbjct: 103 A---NFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVF 159
>pdb|1GXM|A Chain A, Family 10 Polysaccharide Lyase From Cellvibrio Cellulosa
pdb|1GXM|B Chain B, Family 10 Polysaccharide Lyase From Cellvibrio Cellulosa
pdb|1GXN|A Chain A, Family 10 Polysaccharide Lyase From Cellvibrio Cellulosa
Length = 332
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 90 FQSNADSWLKN----SILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKA 145
+Q N W KN S+ + I GA +TE + A++KA
Sbjct: 43 YQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKA 102
Query: 146 GLHKRIKVSSTHSLGVLSRSFPPSAG-----AFNSSHAHFLKPLLEFLADNQSPFMIDIY 200
V+S +S G L + +P G FN + + +L+F A+ ++PF D++
Sbjct: 103 A---NFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVF 159
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 384 DWACGPGNVDCSAIQPSQPCYEPDTLLSHASFAINSYYQQNGATDIACSFGGNGV 438
D+ G +D +AI D HA AI SY+Q + A + F G GV
Sbjct: 391 DFQSGFDKIDLTAITKLGGLNFVDAFTGHAGDAIVSYHQASNAGSLQVDFSGQGV 445
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 384 DWACGPGNVDCSAIQPSQPCYEPDTLLSHASFAINSYYQQNGATDIACSFGGNGV 438
D+ G +D +AI D HA AI SY+Q + A + F G GV
Sbjct: 391 DFQSGFDKIDLTAITKLGGLNFVDAFTGHAGDAIVSYHQASNAGSLQVDFSGQGV 445
>pdb|3NYY|A Chain A, Crystal Structure Of A Putative Glycyl-Glycine
Endopeptidase Lytm (Rumgna_02482) From Ruminococcus
Gnavus Atcc 29149 At 1.60 A Resolution
Length = 252
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 260 MVTETGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEEL 307
+VTE GW KG + P A Y +L + + G P K G+ L
Sbjct: 149 VVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKGDPVKAGDLL 196
>pdb|1LTM|A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda
Muramidase/transglycosylase Using Warp
Length = 320
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 29/187 (15%)
Query: 176 SHAHFLKPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNT---GL 232
S A L +L L DNQ+P + P PN L Y + I P+ G+
Sbjct: 42 SQAKRLDSVLR-LMDNQAP-TTSVKP----PSGPNGAWLRY-----RKKFITPDNVQNGV 90
Query: 233 LYTNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQIYNTNLIRH 292
++ N ++ ++ + + I+ ET W G K D + N R
Sbjct: 91 VFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRW---GRVMGKTRILDALATLSFNYPRR 147
Query: 293 VINDSGTPAKRGEELDVYIFSLFNE-----NRKPGLESERNWGLFYPDQTSVYNLDFSGK 347
SG EL+ ++ +E N K +G F P Y +DFSG
Sbjct: 148 AEYFSG-------ELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGD 200
Query: 348 GVVDMTD 354
G +++ D
Sbjct: 201 GHINLWD 207
>pdb|1QUS|A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic
Transglycosylase Slt35 From Escherichia Coli
pdb|1QUT|A Chain A, The Soluble Lytic Transglycosylase Slt35 From Escherichia
Coli In Complex With N-Acetylglucosamine
pdb|1QDR|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycosylase Slt35
pdb|1QDT|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycoyslase Slt35 In Complex With Calcium
pdb|1D0K|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Two Murodipeptides
(Glcnac-Murnac-L-Ala-D-Glu)
pdb|1D0L|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A
pdb|1D0M|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A And (Glcnac)2
Length = 322
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 29/187 (15%)
Query: 176 SHAHFLKPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNT---GL 232
S A L +L L DNQ+P + P PN L Y + I P+ G+
Sbjct: 44 SQAKRLDSVLR-LMDNQAP-TTSVKP----PSGPNGAWLRY-----RKKFITPDNVQNGV 92
Query: 233 LYTNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQIYNTNLIRH 292
++ N ++ ++ + + I+ ET W G K D + N R
Sbjct: 93 VFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRW---GRVMGKTRILDALATLSFNYPRR 149
Query: 293 VINDSGTPAKRGEELDVYIFSLFNE-----NRKPGLESERNWGLFYPDQTSVYNLDFSGK 347
SG EL+ ++ +E N K +G F P Y +DFSG
Sbjct: 150 AEYFSG-------ELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGD 202
Query: 348 GVVDMTD 354
G +++ D
Sbjct: 203 GHINLWD 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,215,980
Number of Sequences: 62578
Number of extensions: 553501
Number of successful extensions: 1280
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 16
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)