Query 013292
Match_columns 446
No_of_seqs 211 out of 1610
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 9E-86 2E-90 659.4 21.8 310 26-344 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.3E-42 5E-47 329.1 25.5 251 24-336 44-305 (305)
3 smart00768 X8 Possibly involve 99.9 2.8E-28 6E-33 199.9 7.3 80 366-446 1-80 (85)
4 PF03198 Glyco_hydro_72: Gluca 99.9 1E-24 2.2E-29 215.2 9.7 237 25-338 29-295 (314)
5 PF07983 X8: X8 domain; Inter 99.9 1.4E-23 3.1E-28 169.0 5.5 73 366-438 1-78 (78)
6 PF07745 Glyco_hydro_53: Glyco 99.1 1.1E-08 2.4E-13 103.8 22.0 245 41-342 27-329 (332)
7 COG3867 Arabinogalactan endo-1 98.6 2.4E-06 5.2E-11 84.1 17.7 204 40-295 65-328 (403)
8 PRK10150 beta-D-glucuronidase; 98.5 2.7E-05 5.9E-10 85.5 23.5 239 43-342 318-585 (604)
9 PF00150 Cellulase: Cellulase 98.4 2.6E-05 5.6E-10 76.0 19.1 206 25-271 10-251 (281)
10 smart00633 Glyco_10 Glycosyl h 97.6 0.0097 2.1E-07 58.4 19.3 78 247-342 173-251 (254)
11 PF02836 Glyco_hydro_2_C: Glyc 97.2 0.022 4.8E-07 56.9 17.5 123 25-158 17-159 (298)
12 PF11790 Glyco_hydro_cc: Glyco 96.9 0.049 1.1E-06 53.0 16.5 210 50-337 18-231 (239)
13 TIGR03356 BGL beta-galactosida 96.6 0.34 7.4E-06 51.3 21.2 45 40-84 56-119 (427)
14 PF00232 Glyco_hydro_1: Glycos 96.2 0.081 1.8E-06 56.4 13.8 116 40-160 60-224 (455)
15 PRK10340 ebgA cryptic beta-D-g 95.2 0.57 1.2E-05 55.0 16.7 98 25-122 336-452 (1021)
16 PLN02998 beta-glucosidase 92.5 14 0.00031 40.0 19.8 46 41-86 85-149 (497)
17 PLN02814 beta-glucosidase 91.3 25 0.00054 38.3 21.2 47 40-86 79-144 (504)
18 PF02449 Glyco_hydro_42: Beta- 90.1 2.4 5.2E-05 43.8 10.6 84 40-123 12-141 (374)
19 PRK09936 hypothetical protein; 88.3 3.3 7.2E-05 41.5 9.5 76 8-83 4-96 (296)
20 PF01229 Glyco_hydro_39: Glyco 83.3 33 0.00072 36.9 15.0 245 48-339 50-350 (486)
21 COG3934 Endo-beta-mannanase [C 82.8 5.1 0.00011 42.8 8.2 91 95-205 123-213 (587)
22 cd02875 GH18_chitobiase Chitob 81.1 12 0.00026 38.6 10.3 133 51-203 55-190 (358)
23 PLN02849 beta-glucosidase 80.2 95 0.0021 33.8 21.8 46 41-86 82-146 (503)
24 PF13547 GTA_TIM: GTA TIM-barr 78.4 2.8 6.1E-05 41.9 4.3 87 108-208 17-115 (299)
25 PF00925 GTP_cyclohydro2: GTP 77.9 2.6 5.7E-05 38.9 3.8 38 43-80 131-168 (169)
26 PF03662 Glyco_hydro_79n: Glyc 77.8 18 0.00038 37.0 10.0 122 63-201 112-246 (319)
27 PRK09852 cryptic 6-phospho-bet 76.0 1.2E+02 0.0026 32.7 22.9 47 40-86 73-139 (474)
28 PRK09525 lacZ beta-D-galactosi 75.7 12 0.00026 44.2 9.3 97 25-121 352-464 (1027)
29 PF14488 DUF4434: Domain of un 71.3 59 0.0013 29.9 11.0 99 43-145 25-151 (166)
30 PLN03059 beta-galactosidase; P 68.3 1.1E+02 0.0024 35.4 14.3 120 38-159 56-224 (840)
31 TIGR00505 ribA GTP cyclohydrol 67.4 8.8 0.00019 36.1 4.7 33 44-76 131-163 (191)
32 PRK00393 ribA GTP cyclohydrola 66.9 9.1 0.0002 36.3 4.7 33 44-76 134-166 (197)
33 smart00481 POLIIIAc DNA polyme 61.4 31 0.00067 26.1 6.0 44 38-81 15-63 (67)
34 PRK09593 arb 6-phospho-beta-gl 61.1 2.4E+02 0.0053 30.4 24.1 47 40-86 75-141 (478)
35 cd00641 GTP_cyclohydro2 GTP cy 58.3 16 0.00034 34.4 4.7 36 44-79 133-168 (193)
36 COG4669 EscJ Type III secretor 57.3 51 0.0011 32.3 7.9 148 3-177 2-158 (246)
37 PRK12485 bifunctional 3,4-dihy 57.0 13 0.00028 38.8 4.1 33 44-77 331-363 (369)
38 cd02872 GH18_chitolectin_chito 55.6 56 0.0012 33.4 8.6 120 65-204 61-192 (362)
39 TIGR01579 MiaB-like-C MiaB-lik 55.5 2.1E+02 0.0046 29.9 13.0 62 126-206 270-331 (414)
40 PLN00196 alpha-amylase; Provis 55.2 27 0.00059 37.1 6.3 57 25-81 28-114 (428)
41 COG2730 BglC Endoglucanase [Ca 53.7 87 0.0019 32.9 9.8 105 41-146 76-219 (407)
42 COG4782 Uncharacterized protei 53.0 46 0.001 34.7 7.2 43 251-296 142-187 (377)
43 PRK14019 bifunctional 3,4-dihy 52.8 17 0.00037 37.9 4.2 35 44-79 328-362 (367)
44 PRK09314 bifunctional 3,4-dihy 51.1 21 0.00044 36.9 4.4 34 43-76 300-334 (339)
45 PRK09318 bifunctional 3,4-dihy 50.6 23 0.00049 37.2 4.7 38 44-81 320-357 (387)
46 PF12876 Cellulase-like: Sugar 50.5 29 0.00062 28.1 4.4 47 108-156 8-63 (88)
47 cd00598 GH18_chitinase-like Th 50.1 56 0.0012 30.2 6.9 84 63-147 53-142 (210)
48 PRK08815 GTP cyclohydrolase; P 49.9 23 0.00051 37.0 4.7 37 44-80 305-341 (375)
49 PLN02831 Bifunctional GTP cycl 49.6 23 0.0005 37.9 4.6 37 44-80 373-409 (450)
50 PF02055 Glyco_hydro_30: O-Gly 48.6 2.6E+02 0.0056 30.4 12.5 90 70-159 166-283 (496)
51 PRK09319 bifunctional 3,4-dihy 48.5 25 0.00054 38.6 4.7 38 44-81 343-380 (555)
52 COG1433 Uncharacterized conser 48.0 41 0.00088 29.5 5.2 39 42-80 56-94 (121)
53 PRK09311 bifunctional 3,4-dihy 47.7 26 0.00057 37.0 4.7 37 44-80 339-375 (402)
54 cd02874 GH18_CFLE_spore_hydrol 46.7 61 0.0013 32.4 7.1 84 61-147 47-138 (313)
55 COG3250 LacZ Beta-galactosidas 46.5 71 0.0015 36.8 8.2 111 26-141 303-423 (808)
56 PRK13511 6-phospho-beta-galact 46.0 42 0.00091 36.1 6.0 47 40-86 56-121 (469)
57 TIGR03632 bact_S11 30S ribosom 45.4 51 0.0011 28.2 5.3 36 42-77 51-91 (108)
58 PF13377 Peripla_BP_3: Peripla 44.0 1.7E+02 0.0037 25.2 8.8 112 44-178 1-124 (160)
59 PRK13347 coproporphyrinogen II 42.2 46 0.001 35.5 5.6 99 41-148 152-282 (453)
60 PF14871 GHL6: Hypothetical gl 41.6 69 0.0015 28.4 5.7 44 39-82 1-67 (132)
61 PF00834 Ribul_P_3_epim: Ribul 41.4 3E+02 0.0066 26.0 10.5 94 39-148 68-166 (201)
62 cd02876 GH18_SI-CLP Stabilin-1 40.8 3.1E+02 0.0068 27.4 11.2 125 62-202 54-189 (318)
63 PRK14326 (dimethylallyl)adenos 40.8 3.5E+02 0.0076 29.4 12.1 58 126-202 289-346 (502)
64 PF14587 Glyco_hydr_30_2: O-Gl 40.5 1.5E+02 0.0032 31.2 8.7 95 63-159 108-228 (384)
65 TIGR03628 arch_S11P archaeal r 40.4 66 0.0014 27.9 5.3 36 41-76 53-101 (114)
66 PRK07198 hypothetical protein; 40.2 26 0.00056 36.8 3.2 38 44-81 338-376 (418)
67 COG3534 AbfA Alpha-L-arabinofu 40.2 4E+02 0.0087 28.8 11.8 97 40-142 51-199 (501)
68 PF05990 DUF900: Alpha/beta hy 38.7 80 0.0017 30.5 6.2 43 250-295 43-88 (233)
69 COG0621 MiaB 2-methylthioadeni 37.3 4.9E+02 0.011 27.9 12.2 132 24-204 194-336 (437)
70 PF00411 Ribosomal_S11: Riboso 37.1 65 0.0014 27.6 4.7 36 42-77 51-91 (110)
71 COG0807 RibA GTP cyclohydrolas 36.7 68 0.0015 30.5 5.1 40 44-83 133-172 (193)
72 smart00636 Glyco_18 Glycosyl h 35.0 1.1E+02 0.0024 30.7 6.9 80 65-145 57-142 (334)
73 PF07172 GRP: Glycine rich pro 34.2 28 0.0006 29.2 1.9 12 1-12 1-12 (95)
74 PF13547 GTA_TIM: GTA TIM-barr 34.0 61 0.0013 32.6 4.5 40 256-295 206-265 (299)
75 PRK09607 rps11p 30S ribosomal 33.8 95 0.0021 27.7 5.3 36 41-76 60-108 (132)
76 PRK08091 ribulose-phosphate 3- 33.3 3.5E+02 0.0077 26.3 9.7 95 40-148 80-179 (228)
77 CHL00041 rps11 ribosomal prote 31.9 1.1E+02 0.0024 26.5 5.3 35 42-76 64-103 (116)
78 PRK14334 (dimethylallyl)adenos 31.5 6.5E+02 0.014 26.6 14.2 59 126-203 269-327 (440)
79 PRK05309 30S ribosomal protein 30.7 1.2E+02 0.0026 26.8 5.4 35 42-76 68-107 (128)
80 COG2113 ProX ABC-type proline/ 30.3 1.4E+02 0.003 30.3 6.5 40 45-85 52-92 (302)
81 COG5016 Pyruvate/oxaloacetate 30.1 67 0.0015 34.0 4.2 43 40-82 96-148 (472)
82 cd06545 GH18_3CO4_chitinase Th 30.0 1E+02 0.0022 29.9 5.5 81 63-147 50-133 (253)
83 PF13756 Stimulus_sens_1: Stim 29.9 69 0.0015 27.5 3.7 26 39-64 2-30 (112)
84 PRK14336 (dimethylallyl)adenos 29.7 5.6E+02 0.012 27.0 11.3 59 126-203 256-314 (418)
85 KOG0626 Beta-glucosidase, lact 28.1 1E+02 0.0022 33.7 5.3 75 253-335 404-486 (524)
86 PF13721 SecD-TM1: SecD export 27.8 1.8E+02 0.004 24.4 5.9 36 23-58 31-66 (101)
87 PF02579 Nitro_FeMo-Co: Dinitr 27.6 1.5E+02 0.0033 23.4 5.3 39 40-78 42-80 (94)
88 PRK14330 (dimethylallyl)adenos 27.1 7.6E+02 0.016 26.0 13.8 75 112-205 251-332 (434)
89 PF13670 PepSY_2: Peptidase pr 26.3 1.2E+02 0.0026 24.2 4.3 22 38-60 29-50 (83)
90 PF00704 Glyco_hydro_18: Glyco 25.6 2.8E+02 0.006 27.5 7.9 119 69-204 70-196 (343)
91 TIGR03569 NeuB_NnaB N-acetylne 25.0 4.4E+02 0.0096 27.1 9.2 53 43-99 101-156 (329)
92 PRK14328 (dimethylallyl)adenos 24.9 8.3E+02 0.018 25.8 14.2 61 126-205 279-339 (439)
93 PTZ00129 40S ribosomal protein 24.6 1.6E+02 0.0034 26.9 5.1 37 41-77 79-128 (149)
94 PF14606 Lipase_GDSL_3: GDSL-l 23.5 3.1E+02 0.0067 25.7 7.1 57 238-295 76-133 (178)
95 PRK09589 celA 6-phospho-beta-g 23.5 1.8E+02 0.0038 31.5 6.2 47 40-86 69-135 (476)
96 TIGR00538 hemN oxygen-independ 23.3 2.3E+02 0.005 30.1 7.0 98 41-148 151-281 (455)
97 TIGR01182 eda Entner-Doudoroff 23.0 6.6E+02 0.014 23.9 9.5 68 38-123 109-182 (204)
98 PF00331 Glyco_hydro_10: Glyco 22.8 1.8E+02 0.0039 29.5 5.8 222 63-341 63-312 (320)
99 PRK14057 epimerase; Provisiona 22.7 6.2E+02 0.013 25.1 9.3 96 40-148 87-193 (254)
100 PRK06552 keto-hydroxyglutarate 22.5 6.8E+02 0.015 23.9 10.3 88 38-143 117-210 (213)
101 cd06598 GH31_transferase_CtsZ 22.1 8E+02 0.017 24.7 10.4 71 127-205 22-96 (317)
102 TIGR01233 lacG 6-phospho-beta- 21.8 3.2E+02 0.0069 29.4 7.7 47 40-86 55-120 (467)
103 PRK14332 (dimethylallyl)adenos 21.7 9.9E+02 0.021 25.4 14.2 198 29-265 176-396 (449)
104 PF06117 DUF957: Enterobacteri 21.6 1.7E+02 0.0036 22.9 3.9 42 92-145 11-55 (65)
105 COG1058 CinA Predicted nucleot 21.5 2.6E+02 0.0057 27.7 6.5 32 110-148 3-36 (255)
106 KOG0093 GTPase Rab3, small G p 21.5 2E+02 0.0042 26.6 5.0 60 54-121 71-137 (193)
107 cd02873 GH18_IDGF The IDGF's ( 20.4 6.2E+02 0.014 26.6 9.5 57 128-204 168-224 (413)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=9e-86 Score=659.44 Aligned_cols=310 Identities=55% Similarity=1.005 Sum_probs=256.9
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecCCCCChhhhhhhHhHHHHHHhhcccc
Q 013292 26 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPY 105 (446)
Q Consensus 26 ~GvnYg~~~~n~ps~~~v~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~ 105 (446)
||||||+.++|||+|++++++||+++|++|||||+|+++|+||+++||+|++||+|+++.++++++.+|..||+++|.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHH
Q 013292 106 YPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLL 185 (446)
Q Consensus 106 ~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll 185 (446)
+|.++|++|+||||++...... .|+|||+++|++|.+.||+++|||+|++.++++.++||||.|.|++++..+|++++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l 158 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLL 158 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHH
Confidence 9999999999999999865433 89999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccccCCCccccCCCCccccccccccCCCceecCCCCcccchhHHHHHHHHHHHHHHcCCCCccEEEeeec
Q 013292 186 EFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETG 265 (446)
Q Consensus 186 ~fL~~~~d~~~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~~~~~~y~n~fda~~Da~~~a~~~~g~~~~~i~VsEtG 265 (446)
+||..+++|||+|+||||.|..+|..++||||+|+++.+..|. ++.|+||||+|+|++++||+|+|+++++|+|+|||
T Consensus 159 ~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETG 236 (310)
T PF00332_consen 159 KFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETG 236 (310)
T ss_dssp HHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE-
T ss_pred HHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccc
Confidence 9999999999999999999999999999999999998777754 88999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEecccccccCCCcccceeeeecCCCCeeeeecc
Q 013292 266 WPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKPGLESERNWGLFYPDQTSVYNLDF 344 (446)
Q Consensus 266 WPs~G~~~~~~as~~na~~y~~~lv~~~~s~~gTp~rpg~~~~~yiF~~FdE~~K~g~~~E~~wGlf~~d~~~ky~l~~ 344 (446)
|||+|+ .+|+.+||++|++++++++. +|||+||+.++++||||+|||+||+|+.+|||||||++||++||+++|
T Consensus 237 WPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 237 WPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp --SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred cccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 999998 47899999999999999997 699999999999999999999999998899999999999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-42 Score=329.13 Aligned_cols=251 Identities=25% Similarity=0.390 Sum_probs=202.6
Q ss_pred ceeeEEecCCCCC--CCCHHHHHHHHHhC-CC-CEEEEecCCh----HHHHHHHhCCCEEEEecCCCCChhhhhhhHhHH
Q 013292 24 STIGVCYGRNADD--LPTPDKVAQLVKQH-NI-KYLRIYDSNI----QVLKAFANTGVELMIGIPNSDLLPFAQFQSNAD 95 (446)
Q Consensus 24 ~~~GvnYg~~~~n--~ps~~~v~~~lk~~-~i-~~VRiY~~d~----~vL~A~a~~gi~V~vgv~n~~~~~~~~~~~~a~ 95 (446)
++.+|+||++.++ .++.+++..+|..+ .+ ..||+|.+|+ ++++|+...|++|++|||..+..+-+. +
T Consensus 44 g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~-----~ 118 (305)
T COG5309 44 GFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAV-----E 118 (305)
T ss_pred cccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhH-----H
Confidence 4689999999887 58889987655432 22 3999999887 578999999999999999865433221 2
Q ss_pred HHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCccccc
Q 013292 96 SWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNS 175 (446)
Q Consensus 96 ~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~ 175 (446)
.-+...+.++..++.|++|.||||+|+|++.++++|+.+|.++|.+|+++|++ .||+|++.|.++.++ |
T Consensus 119 ~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n-p-------- 187 (305)
T COG5309 119 KTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN-P-------- 187 (305)
T ss_pred HHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC-h--------
Confidence 23557788888889999999999999999999999999999999999999997 589999999998763 2
Q ss_pred chhhhhHhHHHHHHhcCCCcccccCCCccccCCCCccccccccccCCCceecCCCCcccchhHHHHHHHHHHHHHHcCCC
Q 013292 176 SHAHFLKPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFR 255 (446)
Q Consensus 176 ~~~~~~~~ll~fL~~~~d~~~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~~~~~~y~n~fda~~Da~~~a~~~~g~~ 255 (446)
+ |+++.||+|+|.||||+...-.+ + .++ ++-.|+.-++.+. ..
T Consensus 188 ~-----------l~~~SDfia~N~~aYwd~~~~a~----------------~-----~~~-f~~~q~e~vqsa~----g~ 230 (305)
T COG5309 188 E-----------LCQASDFIAANAHAYWDGQTVAN----------------A-----AGT-FLLEQLERVQSAC----GT 230 (305)
T ss_pred H-----------Hhhhhhhhhcccchhccccchhh----------------h-----hhH-HHHHHHHHHHHhc----CC
Confidence 2 46688999999999999753211 0 111 2334455444332 34
Q ss_pred CccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEecccccccC-CC-cccceeeee
Q 013292 256 TIKIMVTETGWPSKGSPKE-KAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKP-GL-ESERNWGLF 332 (446)
Q Consensus 256 ~~~i~VsEtGWPs~G~~~~-~~as~~na~~y~~~lv~~~~s~~gTp~rpg~~~~~yiF~~FdE~~K~-g~-~~E~~wGlf 332 (446)
+++++|+||||||.|..+| +.||++||+.|.+++++.+++ .++++|+||+|||+||. |. ++|+|||++
T Consensus 231 ~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~ 301 (305)
T COG5309 231 KKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWGVL 301 (305)
T ss_pred CccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhceeee
Confidence 5999999999999999986 899999999999999998876 58999999999999996 55 899999999
Q ss_pred cCCC
Q 013292 333 YPDQ 336 (446)
Q Consensus 333 ~~d~ 336 (446)
+.|+
T Consensus 302 ~s~~ 305 (305)
T COG5309 302 SSDR 305 (305)
T ss_pred ccCC
Confidence 8774
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.95 E-value=2.8e-28 Score=199.87 Aligned_cols=80 Identities=53% Similarity=1.037 Sum_probs=78.1
Q ss_pred eeEEecCCCChHHHHhhhccccCCCccCCCccCCCCCCcCCCChhhhhhHHHHHHHHhcCCCCCCCCCCceeeEeccCCC
Q 013292 366 TWCIASTKASEADLQNALDWACGPGNVDCSAIQPSQPCYEPDTLLSHASFAINSYYQQNGATDIACSFGGNGVKVDKNPS 445 (446)
Q Consensus 366 ~~Cv~~~~~~~~~l~~~ld~aC~~~~~dC~~I~~~g~c~~~~t~~~~asya~N~Yyq~~~~~~~~CdF~G~a~~~~~dps 445 (446)
+|||+|+++++++||++|||||+++ +||++|++||+||+||++++|||||||+|||++++.+.+|||+|+|++++.|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999987 899999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 013292 446 M 446 (446)
Q Consensus 446 ~ 446 (446)
+
T Consensus 80 ~ 80 (85)
T smart00768 80 T 80 (85)
T ss_pred C
Confidence 5
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.91 E-value=1e-24 Score=215.21 Aligned_cols=237 Identities=19% Similarity=0.331 Sum_probs=134.8
Q ss_pred eeeEEecCCCC-------CCC-CHH---HHHHHHHhCCCCEEEEecCCh-----HHHHHHHhCCCEEEEecCCCCChhhh
Q 013292 25 TIGVCYGRNAD-------DLP-TPD---KVAQLVKQHNIKYLRIYDSNI-----QVLKAFANTGVELMIGIPNSDLLPFA 88 (446)
Q Consensus 25 ~~GvnYg~~~~-------n~p-s~~---~v~~~lk~~~i~~VRiY~~d~-----~vL~A~a~~gi~V~vgv~n~~~~~~~ 88 (446)
..||.|-+-++ +.. .++ +.+++||++|+++||+|..|| .||++|++.||+|+++|..+. .+|.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 37999998766 222 222 356789999999999999986 699999999999999999883 3454
Q ss_pred hhhHhHHHHHHhh-------ccccCCCCeEEEEEeccccccCCC--CChhhHHHHHHHHHHHHHHcCCCCceEEeeeecc
Q 013292 89 QFQSNADSWLKNS-------ILPYYPAAKITYITVGAEVTESTD--NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSL 159 (446)
Q Consensus 89 ~~~~~a~~wv~~~-------v~~~~~~~~I~~I~VGNEvl~~~~--~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~ 159 (446)
+. .-+..|-... |..+..++|+.++++||||+.... ..++.+++++|++|+++++.+++ +|||+++.+.
T Consensus 108 r~-~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaaD 185 (314)
T PF03198_consen 108 RS-DPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAAD 185 (314)
T ss_dssp TT-S------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CC-CCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEccC
Confidence 33 1223564333 334446799999999999998753 46899999999999999999997 5999999766
Q ss_pred cccccCCCCCCcccccchhhhhHhHHHHHHhc-----CCCcccccCCCccccCCCCccccccccccCCCceecCCCCccc
Q 013292 160 GVLSRSFPPSAGAFNSSHAHFLKPLLEFLADN-----QSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLY 234 (446)
Q Consensus 160 ~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~-----~d~~~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~~~~~~y 234 (446)
.. +...++++||.|. .|||++|.| +||++.. |+. +| |
T Consensus 186 ~~-----------------~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y---~WCg~St--------f~~-SG---------y 227 (314)
T PF03198_consen 186 DA-----------------EIRQDLANYLNCGDDDERIDFFGLNSY---EWCGDST--------FET-SG---------Y 227 (314)
T ss_dssp -T-----------------TTHHHHHHHTTBTT-----S-EEEEE-------SS----------HHH-HS---------H
T ss_pred Ch-----------------hHHHHHHHHhcCCCcccccceeeeccc---eecCCCc--------ccc-cc---------H
Confidence 42 2346789999985 599999999 7886532 432 23 2
Q ss_pred chhHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEec
Q 013292 235 TNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSL 314 (446)
Q Consensus 235 ~n~fda~~Da~~~a~~~~g~~~~~i~VsEtGWPs~G~~~~~~as~~na~~y~~~lv~~~~s~~gTp~rpg~~~~~yiF~~ 314 (446)
.. +...++. ..+||+++|.||.+..+ |+|.+ +..+.+..+|....| ..+||+
T Consensus 228 ~~--------l~~~f~~---y~vPvffSEyGCn~~~p-----------R~f~e--v~aly~~~Mt~v~SG----GivYEy 279 (314)
T PF03198_consen 228 DR--------LTKEFSN---YSVPVFFSEYGCNTVTP-----------RTFTE--VPALYSPEMTDVWSG----GIVYEY 279 (314)
T ss_dssp HH--------HHHHHTT----SS-EEEEEE---SSSS--------------TH--HHHHTSHHHHTTEEE----EEES-S
T ss_pred HH--------HHHHhhC---CCCCeEEcccCCCCCCC-----------ccchH--hHHhhCccchhheec----eEEEEE
Confidence 22 2223332 36999999999987653 45544 555555555555555 378999
Q ss_pred ccccccCCCcccceeeeecCCCCe
Q 013292 315 FNENRKPGLESERNWGLFYPDQTS 338 (446)
Q Consensus 315 FdE~~K~g~~~E~~wGlf~~d~~~ 338 (446)
|.| +++|||+..++..
T Consensus 280 ~~e--------~n~yGlV~~~~~~ 295 (314)
T PF03198_consen 280 FQE--------ANNYGLVEISGDG 295 (314)
T ss_dssp B----------SSS--SEEE-TTS
T ss_pred ecc--------CCceEEEEEcCCC
Confidence 988 4889999877654
No 5
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.88 E-value=1.4e-23 Score=169.00 Aligned_cols=73 Identities=45% Similarity=0.916 Sum_probs=63.4
Q ss_pred eeEEecCCCChHHHHhhhccccCCCccCCCccCCCCC-----CcCCCChhhhhhHHHHHHHHhcCCCCCCCCCCceee
Q 013292 366 TWCIASTKASEADLQNALDWACGPGNVDCSAIQPSQP-----CYEPDTLLSHASFAINSYYQQNGATDIACSFGGNGV 438 (446)
Q Consensus 366 ~~Cv~~~~~~~~~l~~~ld~aC~~~~~dC~~I~~~g~-----c~~~~t~~~~asya~N~Yyq~~~~~~~~CdF~G~a~ 438 (446)
+|||+|+++++++|+++|||||+++++||++|+++|+ .|++|+.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 5999999999999999999999998899999999999 899999999999999999999999999999999986
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.12 E-value=1.1e-08 Score=103.82 Aligned_cols=245 Identities=18% Similarity=0.266 Sum_probs=122.8
Q ss_pred HHHHHHHHhCCCCEEEEe---cC------Ch-H---HHHHHHhCCCEEEEecCCCC---------Ch------hhhhhhH
Q 013292 41 DKVAQLVKQHNIKYLRIY---DS------NI-Q---VLKAFANTGVELMIGIPNSD---------LL------PFAQFQS 92 (446)
Q Consensus 41 ~~v~~~lk~~~i~~VRiY---~~------d~-~---vL~A~a~~gi~V~vgv~n~~---------~~------~~~~~~~ 92 (446)
.++.++||+.|++.|||= +. |. . ..+.+++.|++|+|.+--.+ ++ ++++=.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~ 106 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAK 106 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHH
T ss_pred CCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHH
Confidence 678999999999977664 11 11 2 34566789999999986532 10 1111112
Q ss_pred hHHHHHHhhccccC-CCCeEEEEEeccccccC------CCCChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccC
Q 013292 93 NADSWLKNSILPYY-PAAKITYITVGAEVTES------TDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRS 165 (446)
Q Consensus 93 ~a~~wv~~~v~~~~-~~~~I~~I~VGNEvl~~------~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~ 165 (446)
+..++.+.-+.... .+..+..|-||||+-.. .......+...++...+++++.+-+ +||-.-... ..
T Consensus 107 ~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~~-~~--- 180 (332)
T PF07745_consen 107 AVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLAN-GG--- 180 (332)
T ss_dssp HHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES--TT---
T ss_pred HHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEECC-CC---
Confidence 22333332222221 25678899999998653 1234566777777777777776543 454322111 10
Q ss_pred CCCCCcccccchhhhhHhHHHHHHhc---CCCcccccCCCccccCCCCccccccccccCCCceecCCCCcccchhHHHHH
Q 013292 166 FPPSAGAFNSSHAHFLKPLLEFLADN---QSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQI 242 (446)
Q Consensus 166 ~pPS~~~F~~~~~~~~~~ll~fL~~~---~d~~~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~~~~~~y~n~fda~~ 242 (446)
+ ....+-..+.|... -|.++++.||||... + +.+...+
T Consensus 181 ----------~-~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-------l---------------------~~l~~~l 221 (332)
T PF07745_consen 181 ----------D-NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-------L---------------------EDLKNNL 221 (332)
T ss_dssp ----------S-HHHHHHHHHHHHHTTGG-SEEEEEE-STTST--------H---------------------HHHHHHH
T ss_pred ----------c-hHHHHHHHHHHHhcCCCcceEEEecCCCCcch-------H---------------------HHHHHHH
Confidence 0 01122233333332 399999999998851 0 0122223
Q ss_pred HHHHHHHHHcCCCCccEEEeeeccCCCCCC-----CC---------CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 013292 243 DSIYFALMALNFRTIKIMVTETGWPSKGSP-----KE---------KAATPDNAQIYNTNLIRHVINDSGTPAKRGEELD 308 (446)
Q Consensus 243 Da~~~a~~~~g~~~~~i~VsEtGWPs~G~~-----~~---------~~as~~na~~y~~~lv~~~~s~~gTp~rpg~~~~ 308 (446)
+.+ .++. +|+|+|.|||||..-.. +. -.+|++.|+.|++++++.+.+- |- +.++-
T Consensus 222 ~~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~---p~--~~g~G 290 (332)
T PF07745_consen 222 NDL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV---PN--GGGLG 290 (332)
T ss_dssp HHH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEE
T ss_pred HHH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh---cc--CCeEE
Confidence 322 2332 68999999999997211 10 1368999999999999998762 11 23556
Q ss_pred EEEEeccc-cc-----ccCCCcccceeeeecCCCCeeeee
Q 013292 309 VYIFSLFN-EN-----RKPGLESERNWGLFYPDQTSVYNL 342 (446)
Q Consensus 309 ~yiF~~Fd-E~-----~K~g~~~E~~wGlf~~d~~~ky~l 342 (446)
+|+-|--- .. |..|...|+. +||+.+|++--.|
T Consensus 291 vfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 291 VFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred EEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 66654211 11 1122233333 7888888764433
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=2.4e-06 Score=84.13 Aligned_cols=204 Identities=21% Similarity=0.336 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCCCEEEE--e----cCCh--------H------HHHHHHhCCCEEEEecCCCCCh-hhhhhhHhHHHHH
Q 013292 40 PDKVAQLVKQHNIKYLRI--Y----DSNI--------Q------VLKAFANTGVELMIGIPNSDLL-PFAQFQSNADSWL 98 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRi--Y----~~d~--------~------vL~A~a~~gi~V~vgv~n~~~~-~~~~~~~~a~~wv 98 (446)
.+++.+.||..||+.||| | |.|. + +-+.+++.|+||++..-..+-= .-+ -+..-..|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPa-kQ~kPkaW~ 143 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPA-KQKKPKAWE 143 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChh-hcCCcHHhh
Confidence 466788999999997665 3 4431 2 2344568999999998654310 000 001112232
Q ss_pred -------HhhccccC---------CCCeEEEEEeccccccC-----CCC-ChhhHHHHHHHHHHHHHHcCCCCceEEeee
Q 013292 99 -------KNSILPYY---------PAAKITYITVGAEVTES-----TDN-SSSLVVPAMQNVFTALKKAGLHKRIKVSST 156 (446)
Q Consensus 99 -------~~~v~~~~---------~~~~I~~I~VGNEvl~~-----~~~-~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~ 156 (446)
++.|-.|. -+..+..|-||||.-.. ++. ....+...++.--++++... ..|||---
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH 221 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH 221 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE
Confidence 22222221 14567889999998653 222 23344444444444554433 34666533
Q ss_pred ecccccccCCCCCCcccccchhhhhHhHHHHHHhc---CCCcccccCCCccccCCCCccccccccccCCCceecCCCCcc
Q 013292 157 HSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADN---QSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLL 233 (446)
Q Consensus 157 ~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~---~d~~~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~~~~~~ 233 (446)
. .+.-. .+.|| -+.+-|.+. -|.|++--||||... + + .|.
T Consensus 222 l-----a~g~~--n~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgt-----l--~---------------nL~ 264 (403)
T COG3867 222 L-----AEGEN--NSLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGT-----L--N---------------NLT 264 (403)
T ss_pred e-----cCCCC--Cchhh--------HHHHHHHHcCCCceEEeeeccccccCc-----H--H---------------HHH
Confidence 2 22111 22332 233333333 288999999999873 1 0 010
Q ss_pred cchhHHHHHHHHHHHHHHcCCCCccEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 013292 234 YTNMFDAQIDSIYFALMALNFRTIKIMVTETGW--------------PSKGSPKEKAATPDNAQIYNTNLIRHVIN 295 (446)
Q Consensus 234 y~n~fda~~Da~~~a~~~~g~~~~~i~VsEtGW--------------Ps~G~~~~~~as~~na~~y~~~lv~~~~s 295 (446)
+| ++. +.. -.+|.|+|.||+. |+.+...+-..++.-|++|.+++|+.+.+
T Consensus 265 -~n-l~d--------ia~--rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 265 -TN-LND--------IAS--RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred -hH-HHH--------HHH--HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 12 221 111 1478999999987 44332212236778899999999999875
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.47 E-value=2.7e-05 Score=85.50 Aligned_cols=239 Identities=11% Similarity=0.092 Sum_probs=136.7
Q ss_pred HHHHHHhCCCCEEEEec--CChHHHHHHHhCCCEEEEecCCCCC---------------hhhh------hhhHhHHHHHH
Q 013292 43 VAQLVKQHNIKYLRIYD--SNIQVLKAFANTGVELMIGIPNSDL---------------LPFA------QFQSNADSWLK 99 (446)
Q Consensus 43 v~~~lk~~~i~~VRiY~--~d~~vL~A~a~~gi~V~vgv~n~~~---------------~~~~------~~~~~a~~wv~ 99 (446)
.+++||+.|+|.||+-. .++..+.++...||.|+.-++.... .... +..+...+-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 45678999999999932 3568999999999999976643110 0010 01112223355
Q ss_pred hhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhh
Q 013292 100 NSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAH 179 (446)
Q Consensus 100 ~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~ 179 (446)
+.|.++.....|..-.+|||.-... ......++.+.+.+++.--+ =+|+++..+.. +|.. +.
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~Dpt--R~vt~~~~~~~-----~~~~----~~--- 459 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPT--RPVTCVNVMFA-----TPDT----DT--- 459 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCC--CceEEEecccC-----Cccc----cc---
Confidence 5666665556788999999974321 22334455555666555433 35776643210 1100 00
Q ss_pred hhHhHHHHHHhcCCCcccccCCCccccCCCCccccccccccCCCceecCCCCcccchhHHHHHHHHHHHHHHcCCCCccE
Q 013292 180 FLKPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKI 259 (446)
Q Consensus 180 ~~~~ll~fL~~~~d~~~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~~~~~~y~n~fda~~Da~~~a~~~~g~~~~~i 259 (446)
+....|+++.|.|+= |..+.. +.+. ....++..++ ...+. + ++|+
T Consensus 460 --------~~~~~Dv~~~N~Y~~--wy~~~~----~~~~---------------~~~~~~~~~~----~~~~~-~-~kP~ 504 (604)
T PRK10150 460 --------VSDLVDVLCLNRYYG--WYVDSG----DLET---------------AEKVLEKELL----AWQEK-L-HKPI 504 (604)
T ss_pred --------ccCcccEEEEcccce--ecCCCC----CHHH---------------HHHHHHHHHH----HHHHh-c-CCCE
Confidence 122459999999852 221111 0000 0112222222 11111 2 7999
Q ss_pred EEeeeccCCC----CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEecccccccCCC--cccceeeeec
Q 013292 260 MVTETGWPSK----GSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKPGL--ESERNWGLFY 333 (446)
Q Consensus 260 ~VsEtGWPs~----G~~~~~~as~~na~~y~~~lv~~~~s~~gTp~rpg~~~~~yiF~~FdE~~K~g~--~~E~~wGlf~ 333 (446)
+++|+|+.+. +..+ ..-|.+.|..|++...+.+.. +|. -+-.|+..+||-....|. ....+.||++
T Consensus 505 ~isEyg~~~~~~~h~~~~-~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~ 576 (604)
T PRK10150 505 IITEYGADTLAGLHSMYD-DMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKGIFT 576 (604)
T ss_pred EEEccCCccccccccCCC-CCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcceeEc
Confidence 9999997652 2211 234688898888877776543 233 355799999995544331 1235889999
Q ss_pred CCCCeeeee
Q 013292 334 PDQTSVYNL 342 (446)
Q Consensus 334 ~d~~~ky~l 342 (446)
.||+||-..
T Consensus 577 ~dr~~k~~~ 585 (604)
T PRK10150 577 RDRQPKSAA 585 (604)
T ss_pred CCCCChHHH
Confidence 999998654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.41 E-value=2.6e-05 Score=76.05 Aligned_cols=206 Identities=13% Similarity=0.107 Sum_probs=116.3
Q ss_pred eeeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC-------------Ch-------HHHHHHHhCCCEEEEecCCCC-
Q 013292 25 TIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDS-------------NI-------QVLKAFANTGVELMIGIPNSD- 83 (446)
Q Consensus 25 ~~GvnYg~~~~n~ps~~~v~~~lk~~~i~~VRiY~~-------------d~-------~vL~A~a~~gi~V~vgv~n~~- 83 (446)
..|+|-. ..+.. ..++.++.+++.|++.|||.-. +. .+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3456554 22222 6788899999999999999721 11 468889999999999997740
Q ss_pred ---ChhhhhhhHhHHHHHH----hhccccCCCCeEEEEEeccccccCCCC------ChhhHHHHHHHHHHHHHHcCCCCc
Q 013292 84 ---LLPFAQFQSNADSWLK----NSILPYYPAAKITYITVGAEVTESTDN------SSSLVVPAMQNVFTALKKAGLHKR 150 (446)
Q Consensus 84 ---~~~~~~~~~~a~~wv~----~~v~~~~~~~~I~~I~VGNEvl~~~~~------~~~~l~~ai~~vk~aL~~~g~~~~ 150 (446)
.............|++ ....+|.....|.++=+.||+...... ....+.+.++.+.++|++.+-+..
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 0111111112223322 233344344568899999999876432 236788999999999999987643
Q ss_pred eEEeeeecccccccCCCCCCcccccchhhhhHhHHHH--HHhcCCCcccccCCCccccCCCCccccccccccCCCceecC
Q 013292 151 IKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEF--LADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDP 228 (446)
Q Consensus 151 i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~f--L~~~~d~~~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~ 228 (446)
|...... |.. +.. ....+. .....+.+.+|.|+.+....... .
T Consensus 168 --i~~~~~~--~~~-----------~~~---~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~------------~----- 212 (281)
T PF00150_consen 168 --IIVGGGG--WGA-----------DPD---GAAADNPNDADNNDVYSFHFYDPYDFSDQWN------------P----- 212 (281)
T ss_dssp --EEEEEHH--HHT-----------BHH---HHHHHSTTTTTTSEEEEEEEETTTCHHTTTS------------T-----
T ss_pred --eecCCCc--ccc-----------ccc---hhhhcCcccccCceeEEeeEeCCCCcCCccc------------c-----
Confidence 3333211 111 100 001110 01245677777776544321110 0
Q ss_pred CCCcccchhHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCC
Q 013292 229 NTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGS 271 (446)
Q Consensus 229 ~~~~~y~n~fda~~Da~~~a~~~~g~~~~~i~VsEtGWPs~G~ 271 (446)
......+.+...++.....+.+ .++||+|+|.|+++...
T Consensus 213 -~~~~~~~~~~~~~~~~~~~~~~---~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 213 -GNWGDASALESSFRAALNWAKK---NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHH---TTSEEEEEEEESSTTTS
T ss_pred -ccchhhhHHHHHHHHHHHHHHH---cCCeEEEeCcCCcCCCC
Confidence 0011122344455555555555 35799999999996543
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.55 E-value=0.0097 Score=58.36 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=53.8
Q ss_pred HHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEecccc-cccCCCcc
Q 013292 247 FALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNE-NRKPGLES 325 (446)
Q Consensus 247 ~a~~~~g~~~~~i~VsEtGWPs~G~~~~~~as~~na~~y~~~lv~~~~s~~gTp~rpg~~~~~yiF~~FdE-~~K~g~~~ 325 (446)
..|++++-.++||.|||++-|... +.+.|+.+++++++.+.+. | + ...+++..+.|. .|.++
T Consensus 173 ~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~--- 235 (254)
T smart00633 173 AALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG--- 235 (254)
T ss_pred HHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC---
Confidence 344444434899999999988642 3478889999999988863 2 2 234566666664 36543
Q ss_pred cceeeeecCCCCeeeee
Q 013292 326 ERNWGLFYPDQTSVYNL 342 (446)
Q Consensus 326 E~~wGlf~~d~~~ky~l 342 (446)
.+-|||+.|++||-.+
T Consensus 236 -~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 236 -GAPLLFDANYQPKPAY 251 (254)
T ss_pred -CCceeECCCCCCChhh
Confidence 4679999999887544
No 11
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.20 E-value=0.022 Score=56.91 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=69.3
Q ss_pred eeeEEecCCCCC---CCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHHhCCCEEEEecCCCCC---hhh------
Q 013292 25 TIGVCYGRNADD---LPTPDKV---AQLVKQHNIKYLRIYD--SNIQVLKAFANTGVELMIGIPNSDL---LPF------ 87 (446)
Q Consensus 25 ~~GvnYg~~~~n---~ps~~~v---~~~lk~~~i~~VRiY~--~d~~vL~A~a~~gi~V~vgv~n~~~---~~~------ 87 (446)
..|||+...... .++.+.. ++++|+.|+|.||+.. .++..+.++...||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 469998864322 2444543 4578999999999964 3578999999999999988876211 000
Q ss_pred hhhh---HhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCceEEeeeec
Q 013292 88 AQFQ---SNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHS 158 (446)
Q Consensus 88 ~~~~---~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~ 158 (446)
..++ +.+.+.+++.|.++.....|..=.+|||. .....++.+...+++.-=++ +|++...
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptR--pv~~~~~ 159 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTR--PVTYASN 159 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTS--EEEEETG
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCC--ceeeccc
Confidence 1111 22334455566665444568889999999 23344555555555544333 5665543
No 12
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.91 E-value=0.049 Score=53.04 Aligned_cols=210 Identities=14% Similarity=0.131 Sum_probs=115.0
Q ss_pred CCCCEEEEecCChHHHHHHHhCCCEEEEecCCCCChhhhhhhHhHHHHHHhhccccCCCCeEEEEEeccccccCC--CCC
Q 013292 50 HNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTEST--DNS 127 (446)
Q Consensus 50 ~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~--~~~ 127 (446)
.+++..=-|+..+.-. ....+++-+=.+|...... ..|++ +|... ...++.|..=||+=... ..+
T Consensus 18 ~~~sW~YnW~~~~~~~--~~~~~~efvPmlwg~~~~~--------~~~~~-~v~~~--~~~~~~ll~fNEPD~~~qsn~~ 84 (239)
T PF11790_consen 18 SNVSWYYNWGSSPSGS--LDSAGLEFVPMLWGPGSDD--------DDWLA-NVQNA--HPGSKHLLGFNEPDLPGQSNMS 84 (239)
T ss_pred CCcEEEeCCCCCCCCC--CCCCceeEeecccCCCCCc--------hHHHH-HHHhh--ccCccceeeecCCCCCCCCCCC
Confidence 4566664445443211 1122377777888764322 12222 22221 34678889889986543 356
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHH--hcCCCcccccCCCccc
Q 013292 128 SSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLA--DNQSPFMIDIYPYYAY 205 (446)
Q Consensus 128 ~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~--~~~d~~~vN~yPyf~~ 205 (446)
+++.+...+...+.|+. ..+|++.|..-..-.. +|+. .+.|...++-.. +..|++.||.| ..
T Consensus 85 p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~~--~~~g-------~~Wl~~F~~~~~~~~~~D~iavH~Y---~~ 148 (239)
T PF11790_consen 85 PEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNGG--TPGG-------LDWLSQFLSACARGCRVDFIAVHWY---GG 148 (239)
T ss_pred HHHHHHHHHHHHhHhhc----CCcEEECCeecccCCC--CCCc-------cHHHHHHHHhcccCCCccEEEEecC---Cc
Confidence 77777777776666663 2477887754211100 1111 124444444322 35688888877 11
Q ss_pred cCCCCccccccccccCCCceecCCCCcccchhHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHH
Q 013292 206 RDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQIY 285 (446)
Q Consensus 206 ~~~~~~~~~d~A~f~~~~g~~d~~~~~~y~n~fda~~Da~~~a~~~~g~~~~~i~VsEtGWPs~G~~~~~~as~~na~~y 285 (446)
+.+ .|...++.+ .++. ++||+|||.|+...+ ...+.+.++.|
T Consensus 149 --~~~--------------------------~~~~~i~~~---~~~~---~kPIWITEf~~~~~~----~~~~~~~~~~f 190 (239)
T PF11790_consen 149 --DAD--------------------------DFKDYIDDL---HNRY---GKPIWITEFGCWNGG----SQGSDEQQASF 190 (239)
T ss_pred --CHH--------------------------HHHHHHHHH---HHHh---CCCEEEEeecccCCC----CCCCHHHHHHH
Confidence 000 122334333 2343 399999999987622 25788999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcccEEEEecccccccCCCcccceeeeecCCCC
Q 013292 286 NTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKPGLESERNWGLFYPDQT 337 (446)
Q Consensus 286 ~~~lv~~~~s~~gTp~rpg~~~~~yiF~~FdE~~K~g~~~E~~wGlf~~d~~ 337 (446)
.+..+..+.+. +. --.+++|. |...+. ....+-.|+..+|+
T Consensus 191 l~~~~~~ld~~------~~-VeryawF~-~~~~~~---~~~~~~~L~~~~G~ 231 (239)
T PF11790_consen 191 LRQALPWLDSQ------PY-VERYAWFG-FMNDGS---GVNPNSALLDADGS 231 (239)
T ss_pred HHHHHHHHhcC------CC-eeEEEecc-cccccC---CCccccccccCCCC
Confidence 99999988652 22 23456666 222222 33455667776764
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=96.60 E-value=0.34 Score=51.33 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCEEEEe-------c-----CCh-------HHHHHHHhCCCEEEEecCCCCC
Q 013292 40 PDKVAQLVKQHNIKYLRIY-------D-----SNI-------QVLKAFANTGVELMIGIPNSDL 84 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRiY-------~-----~d~-------~vL~A~a~~gi~V~vgv~n~~~ 84 (446)
-++.+++|++.|++.+|+= - .|. ++|.++.+.||+++|.+.--++
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 4567899999999998862 1 132 5789999999999999954443
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.20 E-value=0.081 Score=56.39 Aligned_cols=116 Identities=15% Similarity=0.213 Sum_probs=65.8
Q ss_pred HHHHHHHHHhCCCCEEEEe--------c-----CCh-------HHHHHHHhCCCEEEEecCCCCChhhhh------hhHh
Q 013292 40 PDKVAQLVKQHNIKYLRIY--------D-----SNI-------QVLKAFANTGVELMIGIPNSDLLPFAQ------FQSN 93 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRiY--------~-----~d~-------~vL~A~a~~gi~V~vgv~n~~~~~~~~------~~~~ 93 (446)
-++++++||++|++..|+= + .|+ +++..|...||+.+|.+.--+++..-. ++..
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 4578999999999999875 1 122 578999999999999998665543211 1111
Q ss_pred HHHHHHhh----ccccCCCCeEEEEEeccccccC-------C---C--CC-------hhhHHHHHHHHHHHHHHcCCCCc
Q 013292 94 ADSWLKNS----ILPYYPAAKITYITVGAEVTES-------T---D--NS-------SSLVVPAMQNVFTALKKAGLHKR 150 (446)
Q Consensus 94 a~~wv~~~----v~~~~~~~~I~~I~VGNEvl~~-------~---~--~~-------~~~l~~ai~~vk~aL~~~g~~~~ 150 (446)
. .|..+. +..| .+.|+..+.=||+..- + + .. ...++-|-..+.+++++.+..
T Consensus 140 ~-~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~-- 214 (455)
T PF00232_consen 140 V-DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD-- 214 (455)
T ss_dssp H-HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--
T ss_pred H-HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--
Confidence 1 122111 1222 4678888888997641 1 1 11 122444444555666666643
Q ss_pred eEEeeeeccc
Q 013292 151 IKVSSTHSLG 160 (446)
Q Consensus 151 i~Vst~~~~~ 160 (446)
.+|+..++..
T Consensus 215 ~~IGi~~~~~ 224 (455)
T PF00232_consen 215 GKIGIALNFS 224 (455)
T ss_dssp SEEEEEEEEE
T ss_pred eEEecccccc
Confidence 4677666554
No 15
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.21 E-value=0.57 Score=54.96 Aligned_cols=98 Identities=18% Similarity=0.088 Sum_probs=60.1
Q ss_pred eeeEEecCCCC---CCCCHHH---HHHHHHhCCCCEEEEecC--ChHHHHHHHhCCCEEEEecCCCCC--------hhhh
Q 013292 25 TIGVCYGRNAD---DLPTPDK---VAQLVKQHNIKYLRIYDS--NIQVLKAFANTGVELMIGIPNSDL--------LPFA 88 (446)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~---v~~~lk~~~i~~VRiY~~--d~~vL~A~a~~gi~V~vgv~n~~~--------~~~~ 88 (446)
..|+|+-.... ...+++. .++++|+.|+|.||+-.. ++..+.++...||.|+.-++.+.- ..+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 35888654311 1234444 456789999999998642 457899999999999986532210 0111
Q ss_pred hhh---HhHHHHHHhhccccCCCCeEEEEEecccccc
Q 013292 89 QFQ---SNADSWLKNSILPYYPAAKITYITVGAEVTE 122 (446)
Q Consensus 89 ~~~---~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~ 122 (446)
.++ ++..+-+++.|.++.....|..-++|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 222 1112335556666544467889999999743
No 16
>PLN02998 beta-glucosidase
Probab=92.50 E-value=14 Score=40.03 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHHhCCCEEEEecCCCCChh
Q 013292 41 DKVAQLVKQHNIKYLRI-------YD-----SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (446)
Q Consensus 41 ~~v~~~lk~~~i~~VRi-------Y~-----~d~-------~vL~A~a~~gi~V~vgv~n~~~~~ 86 (446)
+++++++|++|++.-|+ += .|+ +++.+|...||+-+|.+.--+++.
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 46789999998877664 31 243 578999999999999998766653
No 17
>PLN02814 beta-glucosidase
Probab=91.34 E-value=25 Score=38.25 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHHhCCCEEEEecCCCCChh
Q 013292 40 PDKVAQLVKQHNIKYLRI-------YD-----SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRi-------Y~-----~d~-------~vL~A~a~~gi~V~vgv~n~~~~~ 86 (446)
-++++++||++|++.-|. += .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 356889999988776654 41 233 578999999999999998766654
No 18
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=90.05 E-value=2.4 Score=43.82 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCCEEEEecC-----Ch-----------HHHHHHHhCCCEEEEecCCCCChh-----------------
Q 013292 40 PDKVAQLVKQHNIKYLRIYDS-----NI-----------QVLKAFANTGVELMIGIPNSDLLP----------------- 86 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRiY~~-----d~-----------~vL~A~a~~gi~V~vgv~n~~~~~----------------- 86 (446)
-+++++++|+.|++.|||-.. .| .+|..+++.||+|+|+++....+.
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 346778899999999998432 11 478888999999999996431110
Q ss_pred -----------hh--hhhHhHHHHHHhhccccCCCCeEEEEEeccccccC
Q 013292 87 -----------FA--QFQSNADSWLKNSILPYYPAAKITYITVGAEVTES 123 (446)
Q Consensus 87 -----------~~--~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~ 123 (446)
+. .-...+.+.+++.+..|.....|.++-|.||.-..
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 00 00234555566666667656789999999998663
No 19
>PRK09936 hypothetical protein; Provisional
Probab=88.27 E-value=3.3 Score=41.55 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhcccCceeeEEecCCCCCC-CCHHHHHH---HHHhCCCCEEEEe-----cCC--------hHHHHHHHh
Q 013292 8 FFAISLLLALLGLCKGSTIGVCYGRNADDL-PTPDKVAQ---LVKQHNIKYLRIY-----DSN--------IQVLKAFAN 70 (446)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~GvnYg~~~~n~-ps~~~v~~---~lk~~~i~~VRiY-----~~d--------~~vL~A~a~ 70 (446)
++.+.|++++++.-.-+..|+=|-+...+. -++++-.+ .++..|++++=+= +.| ...|+++..
T Consensus 4 ~~~~~l~~l~~~~~~~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~ 83 (296)
T PRK09936 4 FIFVLLTLLLVSPFSQAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQ 83 (296)
T ss_pred HHHHHHHHHHcCchhhccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHH
Confidence 333333333333222345778899988773 56776555 4567899877553 222 257888899
Q ss_pred CCCEEEEecCCCC
Q 013292 71 TGVELMIGIPNSD 83 (446)
Q Consensus 71 ~gi~V~vgv~n~~ 83 (446)
.||+|.||++-|.
T Consensus 84 ~Gl~v~vGL~~Dp 96 (296)
T PRK09936 84 AGLKLVVGLYADP 96 (296)
T ss_pred cCCEEEEcccCCh
Confidence 9999999999874
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=83.32 E-value=33 Score=36.92 Aligned_cols=245 Identities=16% Similarity=0.183 Sum_probs=109.4
Q ss_pred HhCCCCEEEEecCC-----------------------hHHHHHHHhCCCEEEEecCCCCChhhh----------------
Q 013292 48 KQHNIKYLRIYDSN-----------------------IQVLKAFANTGVELMIGIPNSDLLPFA---------------- 88 (446)
Q Consensus 48 k~~~i~~VRiY~~d-----------------------~~vL~A~a~~gi~V~vgv~n~~~~~~~---------------- 88 (446)
+..||+.||+...= -.++..+...||+-+|-+.-.. ..++
T Consensus 50 ~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p-~~~~~~~~~~~~~~~~~~pp 128 (486)
T PF01229_consen 50 EELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMP-MALASGYQTVFWYKGNISPP 128 (486)
T ss_dssp CCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB--GGGBSS--EETTTTEE-S-B
T ss_pred hccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEech-hhhcCCCCccccccCCcCCc
Confidence 45799999998431 1478888899999877664210 0111
Q ss_pred hhhHhHHHHH----HhhccccCCCCeEE--EEEeccccccCC---CCChhhHHHHHHHHHHHHHHcCCCCceEEeeeecc
Q 013292 89 QFQSNADSWL----KNSILPYYPAAKIT--YITVGAEVTEST---DNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSL 159 (446)
Q Consensus 89 ~~~~~a~~wv----~~~v~~~~~~~~I~--~I~VGNEvl~~~---~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~ 159 (446)
.+...-.++| +..+.+|-- ..|. .+=|=||+=... .....+-....+....+|++.. ..++|+-|...
T Consensus 129 ~~~~~W~~lv~~~~~h~~~RYG~-~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~~~ 205 (486)
T PF01229_consen 129 KDYEKWRDLVRAFARHYIDRYGI-EEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPAFA 205 (486)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHH-HHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhhcCC-ccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCcccc
Confidence 1112222223 222333310 1111 456788864432 2334456667777777887765 35889977111
Q ss_pred cccccCCCCCCcccccchhhhhHhHHHHHHhc---CCCcccccCCCccccCCCCccccccccccCCCceecCCCCcccch
Q 013292 160 GVLSRSFPPSAGAFNSSHAHFLKPLLEFLADN---QSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTN 236 (446)
Q Consensus 160 ~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~---~d~~~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~~~~~~y~n 236 (446)
. + ....+...++|.... -||+..|.||+-...... ........ ....
T Consensus 206 ~----~-----------~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~-------------~~~~~~~~--~~~~ 255 (486)
T PF01229_consen 206 W----A-----------YDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN-------------ENMYERIE--DSRR 255 (486)
T ss_dssp T----T------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-S-------------S-EEEEB----HHH
T ss_pred c----c-----------HHHHHHHHHHHHhcCCCCCCEEEEEecccccccccc-------------hhHHhhhh--hHHH
Confidence 0 0 013456777777653 499999999753211000 00000000 0111
Q ss_pred hHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEE---
Q 013292 237 MFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPKE-KAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIF--- 312 (446)
Q Consensus 237 ~fda~~Da~~~a~~~~g~~~~~i~VsEtGWPs~G~~~~-~~as~~na~~y~~~lv~~~~s~~gTp~rpg~~~~~yiF--- 312 (446)
++.. +.-+...+...+.+++++.++| |.+.-.... -.-|.-+|+-..+++++.... .++.|-|
T Consensus 256 ~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sywt~ 322 (486)
T PF01229_consen 256 LFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYWTF 322 (486)
T ss_dssp HHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES-S
T ss_pred HHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhccch
Confidence 2221 2222233445578899999999 776543321 123445555555555555421 1233222
Q ss_pred -ecccccccCCCcccceeeeecCCCCee
Q 013292 313 -SLFNENRKPGLESERNWGLFYPDQTSV 339 (446)
Q Consensus 313 -~~FdE~~K~g~~~E~~wGlf~~d~~~k 339 (446)
..|.|.--+...+-.-|||++.+|-+|
T Consensus 323 sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 323 SDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp BS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred hhhhhccCCCCCceecchhhhhccCCCc
Confidence 134443222223455699999998554
No 21
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=82.84 E-value=5.1 Score=42.84 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=62.5
Q ss_pred HHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccc
Q 013292 95 DSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFN 174 (446)
Q Consensus 95 ~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~ 174 (446)
...|...|.+|--...|.+-..-||.+...+.+...++...+.+.++|+..+-..-|.|+-+ ...|.. |-|-.+.|
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~--~sp~~~-~~pyN~r~- 198 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDP--ASPWPQ-YAPYNARF- 198 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCc--CCcccc-cCCcccce-
Confidence 45677778877656678888889998877778889999999999999998876544444433 322322 21212222
Q ss_pred cchhhhhHhHHHHHHhcCCCcccccCCCccc
Q 013292 175 SSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205 (446)
Q Consensus 175 ~~~~~~~~~ll~fL~~~~d~~~vN~yPyf~~ 205 (446)
++||=+-++||+|..
T Consensus 199 ----------------~vDya~~hLY~hyd~ 213 (587)
T COG3934 199 ----------------YVDYAANHLYRHYDT 213 (587)
T ss_pred ----------------eeccccchhhhhccC
Confidence 568888999996653
No 22
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=81.10 E-value=12 Score=38.64 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=74.4
Q ss_pred CCCEEEEec-CChHHHHHHHhCCCEEEEecCCCCChhhhhhhHhHHHHHHhhccccCCCCeEEEEEeccccccC-CCCCh
Q 013292 51 NIKYLRIYD-SNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTES-TDNSS 128 (446)
Q Consensus 51 ~i~~VRiY~-~d~~vL~A~a~~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~-~~~~~ 128 (446)
.+++|-+|+ .|++++..+...|++|++..-.. .. ..++++.-..|++..|. ++..-+..||-+==|-... .....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~siv~-~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQKVE-LAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHHHH-HHHHhCCCeEEEcccCCCCCCcchH
Confidence 578888885 47899999999999999864322 12 22344444445544432 2221234444443332221 11224
Q ss_pred hhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccc-cchhhhhHhHHHHHHhcCCCcccccCCCc
Q 013292 129 SLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFN-SSHAHFLKPLLEFLADNQSPFMIDIYPYY 203 (446)
Q Consensus 129 ~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~-~~~~~~~~~ll~fL~~~~d~~~vN~yPyf 203 (446)
..+..-|+++|++|.+.+.. ..|+.+..+. |+....+ -|+ .-|++..|++.|-.|=|.
T Consensus 132 ~~~t~llkelr~~l~~~~~~--~~Lsvav~~~-------p~~~~~~~yd~--------~~l~~~vD~v~lMtYD~h 190 (358)
T cd02875 132 YALTELVKETTKAFKKENPG--YQISFDVAWS-------PSCIDKRCYDY--------TGIADASDFLVVMDYDEQ 190 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCC--cEEEEEEecC-------cccccccccCH--------HHHHhhCCEeeEEeeccc
Confidence 56788999999999987643 2344443221 1111111 121 224567899999999543
No 23
>PLN02849 beta-glucosidase
Probab=80.19 E-value=95 Score=33.80 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHHhCCCEEEEecCCCCChh
Q 013292 41 DKVAQLVKQHNIKYLRI-------YD-----SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (446)
Q Consensus 41 ~~v~~~lk~~~i~~VRi-------Y~-----~d~-------~vL~A~a~~gi~V~vgv~n~~~~~ 86 (446)
++++++|+++|++.-|+ +- .|+ +++.++.+.||+-||.+.--+++.
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 46789999988776664 42 233 578999999999999998666654
No 24
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=78.40 E-value=2.8 Score=41.87 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=58.2
Q ss_pred CCeEEEEEecccccc----CCC----CChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCc----cccc
Q 013292 108 AAKITYITVGAEVTE----STD----NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAG----AFNS 175 (446)
Q Consensus 108 ~~~I~~I~VGNEvl~----~~~----~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~----~F~~ 175 (446)
...|.+++||.|-.- +.. ..+..|...+.+||+.| | ..+|||++..|+.+.. +.|..| .|+-
T Consensus 17 aggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~L 90 (299)
T PF13547_consen 17 AGGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFHL 90 (299)
T ss_pred cCCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCcccccC
Confidence 356899999999652 211 23567888888888888 3 3589999999998864 445444 4442
Q ss_pred chhhhhHhHHHHHHhcCCCcccccCCCccccCC
Q 013292 176 SHAHFLKPLLEFLADNQSPFMIDIYPYYAYRDS 208 (446)
Q Consensus 176 ~~~~~~~~ll~fL~~~~d~~~vN~yPyf~~~~~ 208 (446)
.||.. ....|+++|+.|.=++-..+
T Consensus 91 ------DpLWa--~~~IDfIGID~Y~PLSDwrd 115 (299)
T PF13547_consen 91 ------DPLWA--DPNIDFIGIDNYFPLSDWRD 115 (299)
T ss_pred ------ccccc--CCcCCEEEeecccccCCCCC
Confidence 24442 34679999999954444333
No 25
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=77.88 E-value=2.6 Score=38.90 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 013292 43 VAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (446)
Q Consensus 43 v~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~ 80 (446)
-++.|+.+||++||+.+.+|.-+.+|.+.||+|.==+|
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36789999999999999999999999999999974443
No 26
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=77.78 E-value=18 Score=37.03 Aligned_cols=122 Identities=17% Similarity=0.188 Sum_probs=55.3
Q ss_pred HHHHHH-HhCCCEEEEecCCCCChhhhhhhHhHHHHHHhhccccCC-----CCeEEEEEeccccccCC---CCChhhHHH
Q 013292 63 QVLKAF-ANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYP-----AAKITYITVGAEVTEST---DNSSSLVVP 133 (446)
Q Consensus 63 ~vL~A~-a~~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~-----~~~I~~I~VGNEvl~~~---~~~~~~l~~ 133 (446)
+.|..| ..+|.+|+.|+.--.-.....+....-.|-.++...++. .=+|.+-=.|||.-..+ ..++.++..
T Consensus 112 d~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyak 191 (319)
T PF03662_consen 112 DELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAK 191 (319)
T ss_dssp HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHH
T ss_pred HHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHH
Confidence 345554 579999999997432111112223446788888665542 23577888999976433 345778888
Q ss_pred HHHHHHHHHHHc---CCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHHh-cCCCcccccCC
Q 013292 134 AMQNVFTALKKA---GLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLAD-NQSPFMIDIYP 201 (446)
Q Consensus 134 ai~~vk~aL~~~---g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~-~~d~~~vN~yP 201 (446)
....+|+.|++. ... .-+|.-|... |.. +.++++|+-.-. ..|.+.-|.|+
T Consensus 192 D~~~Lr~il~~iy~~~~~-~P~v~gP~~~-------------~d~---~w~~~FL~~~g~~~vD~vT~H~Y~ 246 (319)
T PF03662_consen 192 DFIQLRKILNEIYKNALP-GPLVVGPGGF-------------FDA---DWLKEFLKASGPGVVDAVTWHHYN 246 (319)
T ss_dssp HH---HHHHHHHHHH-TT----EEEEEES-------------S-G---GGHHHHHHHTTTT--SEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC-CCeEECCCCC-------------CCH---HHHHHHHHhcCCCccCEEEEEecC
Confidence 888888877653 111 1235544332 111 234444443333 26889999985
No 27
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=76.04 E-value=1.2e+02 Score=32.74 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCEEEE-------ec------CCh-------HHHHHHHhCCCEEEEecCCCCChh
Q 013292 40 PDKVAQLVKQHNIKYLRI-------YD------SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRi-------Y~------~d~-------~vL~A~a~~gi~V~vgv~n~~~~~ 86 (446)
-++++++|+++|++..|+ +- .|+ .++.++.+.||+.+|.+.--+++.
T Consensus 73 y~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 73 YKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred hHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 367889999988776664 31 243 478999999999999998766654
No 28
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=75.72 E-value=12 Score=44.16 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=60.8
Q ss_pred eeeEEecCCCC---CCCCHHH---HHHHHHhCCCCEEEEec--CChHHHHHHHhCCCEEEEecCCCCC-----hhhhhhh
Q 013292 25 TIGVCYGRNAD---DLPTPDK---VAQLVKQHNIKYLRIYD--SNIQVLKAFANTGVELMIGIPNSDL-----LPFAQFQ 91 (446)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~---v~~~lk~~~i~~VRiY~--~d~~vL~A~a~~gi~V~vgv~n~~~-----~~~~~~~ 91 (446)
..|+|+-.... ...++++ .++++|+.|+|.||+-. .++..+..+...||.|+--++.+.- ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 35888754211 2245555 45678999999999953 3568899999999999988654210 0111121
Q ss_pred ---HhHHHHHHhhccccCCCCeEEEEEeccccc
Q 013292 92 ---SNADSWLKNSILPYYPAAKITYITVGAEVT 121 (446)
Q Consensus 92 ---~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl 121 (446)
.+..+-+++.|.+......|..-++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 122222445555554446789999999964
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=71.35 E-value=59 Score=29.89 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=54.1
Q ss_pred HHHHHHhCCCCEEEE----------ecC------------Ch--HHHHHHHhCCCEEEEecCCCCC----hhhhhhhHhH
Q 013292 43 VAQLVKQHNIKYLRI----------YDS------------NI--QVLKAFANTGVELMIGIPNSDL----LPFAQFQSNA 94 (446)
Q Consensus 43 v~~~lk~~~i~~VRi----------Y~~------------d~--~vL~A~a~~gi~V~vgv~n~~~----~~~~~~~~~a 94 (446)
..+.||+.||++|=+ |.+ |+ .+|+++.+.||+|++|++.+.. ...+.....+
T Consensus 25 ~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~ 104 (166)
T PF14488_consen 25 EFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERN 104 (166)
T ss_pred HHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHH
Confidence 456788899988732 222 11 5789999999999999996521 1111111111
Q ss_pred HHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHc
Q 013292 95 DSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKA 145 (446)
Q Consensus 95 ~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~ 145 (446)
..-.....+.|....-+.|--+-.|+=... ....++.+.+.+.|+..
T Consensus 105 ~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 105 KQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHHHHHHHHHh
Confidence 111111122343333566777777774432 22355666666666654
No 30
>PLN03059 beta-galactosidase; Provisional
Probab=68.28 E-value=1.1e+02 Score=35.36 Aligned_cols=120 Identities=11% Similarity=0.040 Sum_probs=72.9
Q ss_pred CCHHH---HHHHHHhCCCCEEEEecC-----------C----h---HHHHHHHhCCCEEEEec---------------CC
Q 013292 38 PTPDK---VAQLVKQHNIKYLRIYDS-----------N----I---QVLKAFANTGVELMIGI---------------PN 81 (446)
Q Consensus 38 ps~~~---v~~~lk~~~i~~VRiY~~-----------d----~---~vL~A~a~~gi~V~vgv---------------~n 81 (446)
.+|+. .++.+|+.|++.|-+|-. | - .-|+.+++.|++|+|=. |.
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL 135 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWL 135 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhh
Confidence 34554 455678899999999932 1 1 34788889999999853 21
Q ss_pred CCChh--h-hhhh---HhHHHHHHhhccc-----c--CCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCC
Q 013292 82 SDLLP--F-AQFQ---SNADSWLKNSILP-----Y--YPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLH 148 (446)
Q Consensus 82 ~~~~~--~-~~~~---~~a~~wv~~~v~~-----~--~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~ 148 (446)
-..+. + ..++ ++.++|+...+.. + -.+-.|..+=|=||-=.-.......=..+|+.+++.+++.|+.
T Consensus 136 ~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~ 215 (840)
T PLN03059 136 KYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG 215 (840)
T ss_pred hcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC
Confidence 11111 1 1122 3455666544321 1 1246799999999952210001122378999999999999984
Q ss_pred CceEEeeeecc
Q 013292 149 KRIKVSSTHSL 159 (446)
Q Consensus 149 ~~i~Vst~~~~ 159 (446)
||.-|.+..
T Consensus 216 --VPl~t~dg~ 224 (840)
T PLN03059 216 --VPWVMCKQE 224 (840)
T ss_pred --cceEECCCC
Confidence 777776653
No 31
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=67.42 E-value=8.8 Score=36.14 Aligned_cols=33 Identities=15% Similarity=0.457 Sum_probs=30.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEE
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELM 76 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~ 76 (446)
.+.|+.+|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 678999999999999999888899999999987
No 32
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=66.90 E-value=9.1 Score=36.27 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=30.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEE
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELM 76 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~ 76 (446)
++.|+.+||+++|+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999999988899999999997
No 33
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=61.44 E-value=31 Score=26.14 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHHhCCCEEEEecCC
Q 013292 38 PTPDKVAQLVKQHNIKYLRIYDSN-----IQVLKAFANTGVELMIGIPN 81 (446)
Q Consensus 38 ps~~~v~~~lk~~~i~~VRiY~~d-----~~vL~A~a~~gi~V~vgv~n 81 (446)
-++++.++..+++|++.|=+=|-+ +...+.++..||+|+.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 468899999999999988877766 35566777899999999853
No 34
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=61.08 E-value=2.4e+02 Score=30.43 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCCEEEE-------ec------CCh-------HHHHHHHhCCCEEEEecCCCCChh
Q 013292 40 PDKVAQLVKQHNIKYLRI-------YD------SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRi-------Y~------~d~-------~vL~A~a~~gi~V~vgv~n~~~~~ 86 (446)
-++++++||++|++.-|+ +- .|+ +++.+|...||+-+|.+.--+++.
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 467899999998876664 31 243 478999999999999998766653
No 35
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=58.32 E-value=16 Score=34.43 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=31.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEec
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGI 79 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv 79 (446)
++.|+.+|++++|+.+..+.-+.+|.+.||+|.=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 678999999999999998888889999999997333
No 36
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=57.33 E-value=51 Score=32.29 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=76.7
Q ss_pred cchhHHHHHHHHHHHhhcccCceeeEEecCCCCCCC--CHHHHHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 013292 3 RGFELFFAISLLLALLGLCKGSTIGVCYGRNADDLP--TPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (446)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~~n~p--s~~~v~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~ 80 (446)
|..|.++.+++++++.++|.. ..-..|+ ...|++.+|.++||+.-|.=+ ++.|.. +-|.
T Consensus 2 k~~~~~l~~l~l~l~L~gCk~--------~Ly~gL~e~eANemlAlL~~~gI~A~K~~~---------~~g~~~--l~Ve 62 (246)
T COG4669 2 KSLRKYLFLLLLILLLTGCKV--------DLYTGLSEKEANEMLALLMSHGINAEKKAD---------KDGGTS--LLVE 62 (246)
T ss_pred chHHHHHHHHHHHHHHhcchH--------HHHcCCCHhHHHHHHHHHHHcCCcceeecc---------CCCceE--EEEc
Confidence 345556666666666666642 1122233 356789999999999888721 223333 3333
Q ss_pred CCCChhhhhhhHhHHHHHHhhccccCCCCeEEEEEeccccccCCCC-ChhhHHHHHHHHHHHHHHc-C-CCCceEEeeee
Q 013292 81 NSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDN-SSSLVVPAMQNVFTALKKA-G-LHKRIKVSSTH 157 (446)
Q Consensus 81 n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~-~~~~l~~ai~~vk~aL~~~-g-~~~~i~Vst~~ 157 (446)
. ++...|..|++++=.|.-+.+++.=++=.+--+.+... .+...-..=+++-..|+.- | +.-+|.|+.++
T Consensus 63 ~-------~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEkaR~~~~~eQ~le~tLs~mDGVi~ArV~I~lp~ 135 (246)
T COG4669 63 E-------SDFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKARLNYAKEQQLEQTLSKMDGVISARVHISLPE 135 (246)
T ss_pred H-------HHHHHHHHHHHhcCCCCCCCCcHHHhCCcccccCCcHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEEEcCC
Confidence 2 23356788999887776666666545544444433211 1111222223444444433 2 22245666665
Q ss_pred cccccccC-CCCCCccc---ccch
Q 013292 158 SLGVLSRS-FPPSAGAF---NSSH 177 (446)
Q Consensus 158 ~~~~l~~~-~pPS~~~F---~~~~ 177 (446)
+ +..... -|=|+..| ++|.
T Consensus 136 ~-~~~g~~~~P~saSVfIky~~~~ 158 (246)
T COG4669 136 D-DDEGKNALPSSASVFIKYSPDV 158 (246)
T ss_pred C-CccCCCCCCceeEEEEEecCCC
Confidence 5 444433 34455555 4554
No 37
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=57.04 E-value=13 Score=38.77 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=30.0
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEE
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMI 77 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~v 77 (446)
+++|+.+||++||+. .+|.=+.+|.+.||+|.=
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 688999999999999 789888999999999973
No 38
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=55.56 E-value=56 Score=33.37 Aligned_cols=120 Identities=12% Similarity=0.208 Sum_probs=59.4
Q ss_pred HHHHHh--CCCEEEEecC--CC---CChhhhhhhHhHHHHHHhhccccCCCCeEEEEEeccccccC---CCCChhhHHHH
Q 013292 65 LKAFAN--TGVELMIGIP--NS---DLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTES---TDNSSSLVVPA 134 (446)
Q Consensus 65 L~A~a~--~gi~V~vgv~--n~---~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~---~~~~~~~l~~a 134 (446)
+.+++. .++||++.|- .. ....++++++.-..+++..| .++..-++.+|-+==|-... .......++..
T Consensus 61 ~~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv-~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~l 139 (362)
T cd02872 61 FNALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAI-AFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTL 139 (362)
T ss_pred HHHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHH-HHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHH
Confidence 344454 5899998874 22 12345555444444443333 22211123344332232211 11224568889
Q ss_pred HHHHHHHHHHcCCCCceEEeeeecccc--cccCCCCCCcccccchhhhhHhHHHHHHhcCCCcccccCCCcc
Q 013292 135 MQNVFTALKKAGLHKRIKVSSTHSLGV--LSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYA 204 (446)
Q Consensus 135 i~~vk~aL~~~g~~~~i~Vst~~~~~~--l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~~vN~yPyf~ 204 (446)
|+.+|++|.+.+. ...++.+..... +...| ++ .-|.+..|++.|-.|-|..
T Consensus 140 l~~lr~~l~~~~~--~~~ls~av~~~~~~~~~~~---------d~--------~~l~~~vD~v~vmtYD~~~ 192 (362)
T cd02872 140 LKELREAFEPEAP--RLLLTAAVSAGKETIDAAY---------DI--------PEISKYLDFINVMTYDFHG 192 (362)
T ss_pred HHHHHHHHHhhCc--CeEEEEEecCChHHHhhcC---------CH--------HHHhhhcceEEEecccCCC
Confidence 9999999998741 133444432211 11111 11 1245567999998886643
No 39
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=55.50 E-value=2.1e+02 Score=29.92 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=34.1
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHHhcCCCcccccCCCccc
Q 013292 126 NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205 (446)
Q Consensus 126 ~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~~vN~yPyf~~ 205 (446)
.+...++.+++.+|+.+ . .+.|++..-.+ || |+- .+-+...++|+.+. .+-.+++|||--.
T Consensus 270 ~~~~~~~~~v~~l~~~~--~----gi~i~~~~IvG-----~P---gET----~ed~~~tl~~i~~~-~~~~~~~~~~sp~ 330 (414)
T TIGR01579 270 YTRDDFLKLVNKLRSVR--P----DYAFGTDIIVG-----FP---GES----EEDFQETLRMVKEI-EFSHLHIFPYSAR 330 (414)
T ss_pred CCHHHHHHHHHHHHHhC--C----CCeeeeeEEEE-----CC---CCC----HHHHHHHHHHHHhC-CCCEEEeeecCCC
Confidence 45677888888887743 1 24455543322 33 111 22345667777654 3556677776554
Q ss_pred c
Q 013292 206 R 206 (446)
Q Consensus 206 ~ 206 (446)
-
T Consensus 331 p 331 (414)
T TIGR01579 331 P 331 (414)
T ss_pred C
Confidence 3
No 40
>PLN00196 alpha-amylase; Provisional
Probab=55.16 E-value=27 Score=37.11 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=37.2
Q ss_pred eeeEEecCCCCCCCC---HHHHHHHHHhCCCCEE-----------------EEecCCh----------HHHHHHHhCCCE
Q 013292 25 TIGVCYGRNADDLPT---PDKVAQLVKQHNIKYL-----------------RIYDSNI----------QVLKAFANTGVE 74 (446)
Q Consensus 25 ~~GvnYg~~~~n~ps---~~~v~~~lk~~~i~~V-----------------RiY~~d~----------~vL~A~a~~gi~ 74 (446)
.-|++|-....+.-. -.+-++.|+++||+.| +.|+.|+ +.++++.+.||+
T Consensus 28 ~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 28 FQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred EEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCE
Confidence 358888553222111 2233567888898887 5566662 367888899999
Q ss_pred EEEecCC
Q 013292 75 LMIGIPN 81 (446)
Q Consensus 75 V~vgv~n 81 (446)
|++++-.
T Consensus 108 VilDvV~ 114 (428)
T PLN00196 108 VIADIVI 114 (428)
T ss_pred EEEEECc
Confidence 9998743
No 41
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=53.74 E-value=87 Score=32.92 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=61.8
Q ss_pred HHHHHHHHhCCCCEEEEecC----------Ch------------HHHHHHHhCCCEEEEecCCCC-------Ch----hh
Q 013292 41 DKVAQLVKQHNIKYLRIYDS----------NI------------QVLKAFANTGVELMIGIPNSD-------LL----PF 87 (446)
Q Consensus 41 ~~v~~~lk~~~i~~VRiY~~----------d~------------~vL~A~a~~gi~V~vgv~n~~-------~~----~~ 87 (446)
+++...+|+.||+.|||.-. +| ++++.+.+.||+|++.+-... .. ..
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 55677889999999999732 33 246677789999999964321 10 11
Q ss_pred hh---h-hHhHHHHHHhhccccCCCCeEEEEEecccccc-CCCCChhhH-HHHHHHHHHHHHHcC
Q 013292 88 AQ---F-QSNADSWLKNSILPYYPAAKITYITVGAEVTE-STDNSSSLV-VPAMQNVFTALKKAG 146 (446)
Q Consensus 88 ~~---~-~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~-~~~~~~~~l-~~ai~~vk~aL~~~g 146 (446)
.. + ......| +....+|-....|.+|-+=||+.. ..+.....- .+|...|++.+.+.-
T Consensus 156 ~~~~~~~~~~~~~w-~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIW-KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHH-HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcC
Confidence 11 0 1122223 122234444677888899999984 112222222 588888876665543
No 42
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.05 E-value=46 Score=34.66 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=32.0
Q ss_pred HcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhc
Q 013292 251 ALNFRTIKIMVTETGWPSKGSPKE---KAATPDNAQIYNTNLIRHVIND 296 (446)
Q Consensus 251 ~~g~~~~~i~VsEtGWPs~G~~~~---~~as~~na~~y~~~lv~~~~s~ 296 (446)
..|...++|++| |||.|.-.+ ...|...++.-++++++.+...
T Consensus 142 d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 142 DSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred hcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 446778899997 999997532 3566777777788888888764
No 43
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=52.78 E-value=17 Score=37.91 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=31.1
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEec
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGI 79 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv 79 (446)
+++|+.+||++||+.. +|.-+.+|.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6789999999999999 8999999999999997433
No 44
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=51.07 E-value=21 Score=36.87 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCEEEEecCC-hHHHHHHHhCCCEEE
Q 013292 43 VAQLVKQHNIKYLRIYDSN-IQVLKAFANTGVELM 76 (446)
Q Consensus 43 v~~~lk~~~i~~VRiY~~d-~~vL~A~a~~gi~V~ 76 (446)
-.++|+.+||++||+...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3688999999999999999 888889999999986
No 45
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=50.58 E-value=23 Score=37.22 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=33.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecCC
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPN 81 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~n 81 (446)
.++|+.+||++||+...+|.-+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 67899999999999999999999999999999855443
No 46
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=50.46 E-value=29 Score=28.13 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=31.4
Q ss_pred CCeEEEEEeccc-cccC--------CCCChhhHHHHHHHHHHHHHHcCCCCceEEeee
Q 013292 108 AAKITYITVGAE-VTES--------TDNSSSLVVPAMQNVFTALKKAGLHKRIKVSST 156 (446)
Q Consensus 108 ~~~I~~I~VGNE-vl~~--------~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~ 156 (446)
..+|.+-=|+|| .... .......+.+.|+.+-+++++..= ..|||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEee
Confidence 468999999999 5521 112357889999999999998764 4678765
No 47
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=50.10 E-value=56 Score=30.15 Aligned_cols=84 Identities=14% Similarity=0.231 Sum_probs=45.7
Q ss_pred HHHHHHHhC--CCEEEEecCCCCChh---hhhhhHhHHHHHHhhccccCCCCeEEEEEeccccccCCC-CChhhHHHHHH
Q 013292 63 QVLKAFANT--GVELMIGIPNSDLLP---FAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTD-NSSSLVVPAMQ 136 (446)
Q Consensus 63 ~vL~A~a~~--gi~V~vgv~n~~~~~---~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~-~~~~~l~~ai~ 136 (446)
..++.++.. |++|++.|....... +.++++..+++++ ++..++..-++.+|-+==|-..... .....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 456666665 999999987643322 3444443333332 2222322223444444223322111 12567899999
Q ss_pred HHHHHHHHcCC
Q 013292 137 NVFTALKKAGL 147 (446)
Q Consensus 137 ~vk~aL~~~g~ 147 (446)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999977654
No 48
>PRK08815 GTP cyclohydrolase; Provisional
Probab=49.86 E-value=23 Score=36.98 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~ 80 (446)
.++|+.+|+++||+...+|.=+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6789999999999999999888999999999974444
No 49
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=49.59 E-value=23 Score=37.95 Aligned_cols=37 Identities=16% Similarity=0.395 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~ 80 (446)
.++|+.+||++||+...+|.=+.++.+.||+|.==++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6789999999999999999999999999999974444
No 50
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=48.58 E-value=2.6e+02 Score=30.45 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=50.7
Q ss_pred hCCCEEEEecCCCC--------C---hhhhhh--h---HhHHHHHHhhccccCC-CCeEEEEEeccccccC------CC-
Q 013292 70 NTGVELMIGIPNSD--------L---LPFAQF--Q---SNADSWLKNSILPYYP-AAKITYITVGAEVTES------TD- 125 (446)
Q Consensus 70 ~~gi~V~vgv~n~~--------~---~~~~~~--~---~~a~~wv~~~v~~~~~-~~~I~~I~VGNEvl~~------~~- 125 (446)
+.+|+|+..-|-.. + ..+... . ++=...+.+-|+.|-. +..|-+|.+.||+... .+
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 45699999998641 1 111110 0 1112334455555533 6789999999999862 12
Q ss_pred --CChhhHHHHHHH-HHHHHHHcCCCCceEE-eeeecc
Q 013292 126 --NSSSLVVPAMQN-VFTALKKAGLHKRIKV-SSTHSL 159 (446)
Q Consensus 126 --~~~~~l~~ai~~-vk~aL~~~g~~~~i~V-st~~~~ 159 (446)
-++++...-|++ +.-+|++.|+...+|| ...|+.
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~ 283 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR 283 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 246677777876 8999999998445776 445554
No 51
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=48.54 E-value=25 Score=38.56 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=33.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecCC
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPN 81 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~n 81 (446)
+++|+.+||++||+...+|.=+.++.+.||+|.==++.
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 67899999999999999999999999999999844443
No 52
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=48.00 E-value=41 Score=29.54 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 013292 42 KVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (446)
Q Consensus 42 ~v~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~ 80 (446)
++.++|+.+|++.|=+-..-+..+.+|++.||+|+.+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999999999999999999999999999977
No 53
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=47.67 E-value=26 Score=36.97 Aligned_cols=37 Identities=16% Similarity=0.395 Sum_probs=32.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecC
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~ 80 (446)
.++|+.+|+++||+...+|.=+.++.+.||+|.==++
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6789999999999999999988999999999974343
No 54
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=46.73 E-value=61 Score=32.40 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=48.9
Q ss_pred ChHHHHHHHhCCCEEEEecCCCC--------ChhhhhhhHhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHH
Q 013292 61 NIQVLKAFANTGVELMIGIPNSD--------LLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVV 132 (446)
Q Consensus 61 d~~vL~A~a~~gi~V~vgv~n~~--------~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~ 132 (446)
++.++++++..++||++.|.+.. ...+.++++.-..++ +++..++..-.+.||-+==|.+.. .......
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~~--~d~~~~~ 123 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVPP--EDREAYT 123 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCCH--HHHHHHH
Confidence 35788888888999998887643 123444443323333 333322221234455544354321 2345688
Q ss_pred HHHHHHHHHHHHcCC
Q 013292 133 PAMQNVFTALKKAGL 147 (446)
Q Consensus 133 ~ai~~vk~aL~~~g~ 147 (446)
.-|+.+|.+|.+.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 899999999987765
No 55
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=46.53 E-value=71 Score=36.84 Aligned_cols=111 Identities=10% Similarity=0.030 Sum_probs=64.5
Q ss_pred eeEEecCCCCC---CCC---HHHHHHHHHhCCCCEEEEecC--ChHHHHHHHhCCCEEEEecCCCCChhh--hhhhHhHH
Q 013292 26 IGVCYGRNADD---LPT---PDKVAQLVKQHNIKYLRIYDS--NIQVLKAFANTGVELMIGIPNSDLLPF--AQFQSNAD 95 (446)
Q Consensus 26 ~GvnYg~~~~n---~ps---~~~v~~~lk~~~i~~VRiY~~--d~~vL~A~a~~gi~V~vgv~n~~~~~~--~~~~~~a~ 95 (446)
.|+|.=....- ... -.+.++++|+.|+|.||+..- ++.-+.-+...||-|+--.......-- -.-.+.+.
T Consensus 303 kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~ 382 (808)
T COG3250 303 RGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVS 382 (808)
T ss_pred eeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHH
Confidence 57777653221 122 334567788899999999843 457788888999999876654321000 00112233
Q ss_pred HHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHH
Q 013292 96 SWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTA 141 (446)
Q Consensus 96 ~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~a 141 (446)
.-|++.|.+.-....|..-++|||.-.. +.+..+.+.+++.
T Consensus 383 ~~i~~mver~knHPSIiiWs~gNE~~~g-----~~~~~~~~~~k~~ 423 (808)
T COG3250 383 EEVRRMVERDRNHPSIIIWSLGNESGHG-----SNHWALYRWFKAS 423 (808)
T ss_pred HHHHHHHHhccCCCcEEEEeccccccCc-----cccHHHHHHHhhc
Confidence 3355555543223468889999997542 2334444454444
No 56
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=45.97 E-value=42 Score=36.08 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHHhCCCEEEEecCCCCChh
Q 013292 40 PDKVAQLVKQHNIKYLRI-------YD-----SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRi-------Y~-----~d~-------~vL~A~a~~gi~V~vgv~n~~~~~ 86 (446)
-++++++|+++|++.-|+ += .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 567899999998877664 31 233 578999999999999998766654
No 57
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=45.38 E-value=51 Score=28.19 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCEEEEec--CC---hHHHHHHHhCCCEEEE
Q 013292 42 KVAQLVKQHNIKYLRIYD--SN---IQVLKAFANTGVELMI 77 (446)
Q Consensus 42 ~v~~~lk~~~i~~VRiY~--~d---~~vL~A~a~~gi~V~v 77 (446)
++.+.++++|++.|+++= .. ..+|++|+..||+|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 51 DAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 455667889999999983 33 3689999999998643
No 58
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=44.03 E-value=1.7e+02 Score=25.17 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=61.8
Q ss_pred HHHHHhCCCCEEEEecCCh----------HHHHHHHhCCCEEEEecCCCCChhhhhhhHhHHHHHHhhccccCCCCeEEE
Q 013292 44 AQLVKQHNIKYLRIYDSNI----------QVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITY 113 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~----------~vL~A~a~~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~ 113 (446)
++.|.++|.++|-+..... ...++++..|++.-.-............ .....|+++. .| .+
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~----~p----da 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAR-EAQLLWLRRL----RP----DA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHH-HHHHHHHHTC----SS----SE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHH-HHHHHHHhcC----CC----cE
Confidence 4667788998888887432 2467888999985444333222111111 2223366444 12 48
Q ss_pred EEeccccccCCCCChhhHHHHHHHHHHHHHHcCC--CCceEEeeeecccccccCCCCCCcccccchh
Q 013292 114 ITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGL--HKRIKVSSTHSLGVLSRSFPPSAGAFNSSHA 178 (446)
Q Consensus 114 I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~--~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~ 178 (446)
|+++|+.+ ...+..+|.+.|+ .+.+.|-+-+..... ....|....++.+..
T Consensus 72 ii~~~~~~-------------a~~~~~~l~~~g~~vP~di~vv~~~~~~~~-~~~~p~it~i~~~~~ 124 (160)
T PF13377_consen 72 IICSNDRL-------------ALGVLRALRELGIRVPQDISVVSFDDSPLL-EFFSPPITTIDQDPR 124 (160)
T ss_dssp EEESSHHH-------------HHHHHHHHHHTTSCTTTTSEEEEESSSGHH-HCSSSTSEEEEE-HH
T ss_pred EEEcCHHH-------------HHHHHHHHHHcCCcccccccEEEecCcHHH-HHHcCCCceecCCHH
Confidence 88888664 1223456677776 356777776654443 333455666665553
No 59
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=42.21 E-value=46 Score=35.47 Aligned_cols=99 Identities=13% Similarity=0.174 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCEEEEe--cCCh----------------HHHHHHHhCCC-----EEEEecCCCCChhhhhhhHhHHHH
Q 013292 41 DKVAQLVKQHNIKYLRIY--DSNI----------------QVLKAFANTGV-----ELMIGIPNSDLLPFAQFQSNADSW 97 (446)
Q Consensus 41 ~~v~~~lk~~~i~~VRiY--~~d~----------------~vL~A~a~~gi-----~V~vgv~n~~~~~~~~~~~~a~~w 97 (446)
++.++.|++.|+++|-+= +.++ ++++.++..|+ .+|.|+|.+...++..+...+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~- 230 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA- 230 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh-
Confidence 466788888888866443 2222 23445555665 36889998766666544322221
Q ss_pred HHhhccccCCCCeEEEEEecccccc----C--C---CCChhhHHHHHHHHHHHHHHcCCC
Q 013292 98 LKNSILPYYPAAKITYITVGAEVTE----S--T---DNSSSLVVPAMQNVFTALKKAGLH 148 (446)
Q Consensus 98 v~~~v~~~~~~~~I~~I~VGNEvl~----~--~---~~~~~~l~~ai~~vk~aL~~~g~~ 148 (446)
.-| +.|.....-..+.. + + -......+.-++.+...|.++||.
T Consensus 231 -------l~p-~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 231 -------LSP-DRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred -------cCC-CEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE
Confidence 111 12221111001110 0 0 012455677777889999999996
No 60
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=41.56 E-value=69 Score=28.35 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=34.9
Q ss_pred CHHHHHHHHHhCCCCEEEEecC---------------------C--hHHHHHHHhCCCEEEEecCCC
Q 013292 39 TPDKVAQLVKQHNIKYLRIYDS---------------------N--IQVLKAFANTGVELMIGIPNS 82 (446)
Q Consensus 39 s~~~v~~~lk~~~i~~VRiY~~---------------------d--~~vL~A~a~~gi~V~vgv~n~ 82 (446)
.|++.++.||+.+++.|-+|.- | .++++|+...||+|++=+.-.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3678899999999999998753 1 157899999999998877654
No 61
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=41.37 E-value=3e+02 Score=26.04 Aligned_cols=94 Identities=14% Similarity=0.298 Sum_probs=57.7
Q ss_pred CHHHHHHHHHhCCCCEEEEe-c-CC-h-HHHHHHHhCCCEEEEecCCCCChhhhhhhHhHHHHHHhhccccCCC-CeEEE
Q 013292 39 TPDKVAQLVKQHNIKYLRIY-D-SN-I-QVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPA-AKITY 113 (446)
Q Consensus 39 s~~~v~~~lk~~~i~~VRiY-~-~d-~-~vL~A~a~~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~-~~I~~ 113 (446)
.|.+.++.++..|.+.|=+- . .+ + .+|+.++..|+++-+.+.... .+ ..+.+|++. +.|..
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~------------~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV------------EELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G------------GGGTTTGCCSSEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc------------hHHHHHhhhcCEEEE
Confidence 46777887877777766443 1 22 2 688999999999988886542 12 223344443 33333
Q ss_pred EEeccccccCCCCChhhHHHHHHHHHHHHHHcCCC
Q 013292 114 ITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLH 148 (446)
Q Consensus 114 I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~ 148 (446)
.+| |+=..+...-+..+..|+.+|+.+.+.|++
T Consensus 134 MsV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 134 MSV--EPGFGGQKFIPEVLEKIRELRKLIPENGLD 166 (201)
T ss_dssp ESS---TTTSSB--HGGHHHHHHHHHHHHHHHTCG
T ss_pred EEe--cCCCCcccccHHHHHHHHHHHHHHHhcCCc
Confidence 333 332334455778999999999999998875
No 62
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=40.79 E-value=3.1e+02 Score=27.45 Aligned_cols=125 Identities=11% Similarity=0.134 Sum_probs=60.5
Q ss_pred hHHHHHHHh--CCCEEE--E--ecCCCC-ChhhhhhhHhHHHHHHhhccccCCCCeEEEEEec-cccccC--CCCChhhH
Q 013292 62 IQVLKAFAN--TGVELM--I--GIPNSD-LLPFAQFQSNADSWLKNSILPYYPAAKITYITVG-AEVTES--TDNSSSLV 131 (446)
Q Consensus 62 ~~vL~A~a~--~gi~V~--v--gv~n~~-~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VG-NEvl~~--~~~~~~~l 131 (446)
...+.+++. .++||+ + |=|... ...++++++.-..+++. +..++..-++.||-+= =|-... ....-..+
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 344556654 579998 4 334432 34455565544444433 3333222234444331 011110 01223567
Q ss_pred HHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccc-cchhhhhHhHHHHHHhcCCCcccccCCC
Q 013292 132 VPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFN-SSHAHFLKPLLEFLADNQSPFMIDIYPY 202 (446)
Q Consensus 132 ~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~-~~~~~~~~~ll~fL~~~~d~~~vN~yPy 202 (446)
+.-|+.+|++|.+.|+. +-|+.+-.... .+....+. -| +.-|.+..|++.|=.|=|
T Consensus 133 ~~~l~el~~~l~~~~~~--l~~~v~~~~~~-----~~~~~~~~~~d--------~~~l~~~vD~v~lMtYD~ 189 (318)
T cd02876 133 IQLVIHLGETLHSANLK--LILVIPPPREK-----GNQNGLFTRKD--------FEKLAPHVDGFSLMTYDY 189 (318)
T ss_pred HHHHHHHHHHHhhcCCE--EEEEEcCcccc-----ccccccccccC--------HHHHHhhccEEEEEeecc
Confidence 88999999999887752 44443321110 00001111 12 122456779999999943
No 63
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.77 E-value=3.5e+02 Score=29.37 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=31.9
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHHhcCCCcccccCCC
Q 013292 126 NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPY 202 (446)
Q Consensus 126 ~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~~vN~yPy 202 (446)
.+......+++.+|+++ ..+.|++..-. .|| |+- .+-+...++|+.+. -+-.+++|+|
T Consensus 289 ~t~~~~~~~v~~lr~~~------~~i~i~~~~Iv-----GfP---gET----~edf~~Tl~~i~~~-~~~~~~~f~~ 346 (502)
T PRK14326 289 YRSERFLGILEKVRAAM------PDAAITTDIIV-----GFP---GET----EEDFQATLDVVREA-RFSSAFTFQY 346 (502)
T ss_pred CCHHHHHHHHHHHHHhC------CCCeEEEEEEE-----ECC---CCC----HHHHHHHHHHHHHc-CCCEEEEEee
Confidence 56777888888887763 13666654332 233 121 23355677777653 2333455554
No 64
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=40.53 E-value=1.5e+02 Score=31.22 Aligned_cols=95 Identities=21% Similarity=0.175 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCEEEEecCCCCChhh----------------hhhh-HhHHHHHHhhccccC-CCCeEEEEEeccccccCC
Q 013292 63 QVLKAFANTGVELMIGIPNSDLLPF----------------AQFQ-SNADSWLKNSILPYY-PAAKITYITVGAEVTEST 124 (446)
Q Consensus 63 ~vL~A~a~~gi~V~vgv~n~~~~~~----------------~~~~-~~a~~wv~~~v~~~~-~~~~I~~I~VGNEvl~~~ 124 (446)
-.|++++..|+..+++..|...--+ ..+. .+=...+.+.++.|- -+.+|.+|.-=||+-...
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 3789989999999998877521111 0000 000112222222221 257899999999998753
Q ss_pred ---C-----CChhhHHHHHHHHHHHHHHcCCCCceEEeeeecc
Q 013292 125 ---D-----NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSL 159 (446)
Q Consensus 125 ---~-----~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~ 159 (446)
. -...+....|+.++++|+++||.. +|..+++.
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t--~I~~~Ea~ 228 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLST--KISACEAG 228 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S---EEEEEEES
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCc--eEEecchh
Confidence 1 246788999999999999999974 45555544
No 65
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=40.42 E-value=66 Score=27.94 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCEEEEec----------CCh---HHHHHHHhCCCEEE
Q 013292 41 DKVAQLVKQHNIKYLRIYD----------SNI---QVLKAFANTGVELM 76 (446)
Q Consensus 41 ~~v~~~lk~~~i~~VRiY~----------~d~---~vL~A~a~~gi~V~ 76 (446)
+++.+.++++|++.|+++= .-| .+|++|+.+||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 4456677889999988883 233 68999999999975
No 66
>PRK07198 hypothetical protein; Validated
Probab=40.24 E-value=26 Score=36.80 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=33.4
Q ss_pred HHHHHhCCCCEE-EEecCChHHHHHHHhCCCEEEEecCC
Q 013292 44 AQLVKQHNIKYL-RIYDSNIQVLKAFANTGVELMIGIPN 81 (446)
Q Consensus 44 ~~~lk~~~i~~V-RiY~~d~~vL~A~a~~gi~V~vgv~n 81 (446)
.++|+.+||++| |+.+.++.-+.+|.+.||+|.==++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 578999999999 99999998999999999999855543
No 67
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=40.23 E-value=4e+02 Score=28.79 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCCEEEEecC----------------------C-------------hHHHHHHHhCCCEEEEecCCCCC
Q 013292 40 PDKVAQLVKQHNIKYLRIYDS----------------------N-------------IQVLKAFANTGVELMIGIPNSDL 84 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRiY~~----------------------d-------------~~vL~A~a~~gi~V~vgv~n~~~ 84 (446)
+++|+++||++.+..+|-=.- | .+-+.-+..-|.++++.+....
T Consensus 51 RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~Gs- 129 (501)
T COG3534 51 RKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLGS- 129 (501)
T ss_pred HHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecCC-
Confidence 567899999999988885311 0 1346667778888888877653
Q ss_pred hhhhhhhHhHHHHHHhhcc---ccC-----------CCCeEEEEEecccc---ccCCCCChhhHHHHHHHHHHHH
Q 013292 85 LPFAQFQSNADSWLKNSIL---PYY-----------PAAKITYITVGAEV---TESTDNSSSLVVPAMQNVFTAL 142 (446)
Q Consensus 85 ~~~~~~~~~a~~wv~~~v~---~~~-----------~~~~I~~I~VGNEv---l~~~~~~~~~l~~ai~~vk~aL 142 (446)
...++|+.||.=-=- .|. | =+|++..+|||- -.-+..++++-..+..+.+++.
T Consensus 130 ----rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P-~nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~e~~k~~ 199 (501)
T COG3534 130 ----RGVDEARNWVEYCNHPGGTYWSDLRRENGREEP-WNVKYWGLGNEMDGPWQCGHKTAPEYGRLANEYRKYM 199 (501)
T ss_pred ----ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCC-cccceEEeccccCCCcccccccCHHHHHHHHHHHHHH
Confidence 234678888751100 010 2 379999999997 2222333443333444444444
No 68
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=38.67 E-value=80 Score=30.47 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=26.6
Q ss_pred HHcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 013292 250 MALNFRTIKIMVTETGWPSKGSPKE---KAATPDNAQIYNTNLIRHVIN 295 (446)
Q Consensus 250 ~~~g~~~~~i~VsEtGWPs~G~~~~---~~as~~na~~y~~~lv~~~~s 295 (446)
..+++++++|++ .|||.|...+ ...+....+..+..+++.+..
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 345677767766 5999997532 233444455555666766654
No 69
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.32 E-value=4.9e+02 Score=27.93 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=74.9
Q ss_pred ceeeEEecCCCCCCCC----HHHHHHHHHh-CCCCEEEEecCCh-----HHHHHHHhC-CCEEEEecCCCCChhhhhhhH
Q 013292 24 STIGVCYGRNADDLPT----PDKVAQLVKQ-HNIKYLRIYDSNI-----QVLKAFANT-GVELMIGIPNSDLLPFAQFQS 92 (446)
Q Consensus 24 ~~~GvnYg~~~~n~ps----~~~v~~~lk~-~~i~~VRiY~~d~-----~vL~A~a~~-gi~V~vgv~n~~~~~~~~~~~ 92 (446)
.-+|.|-+.||.+++. -.+.++.|.+ .|+.+||+=..+| ++++|++.+ .+-=.+.+|...- + +
T Consensus 194 ~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsG---s-d-- 267 (437)
T COG0621 194 VLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSG---S-D-- 267 (437)
T ss_pred EEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccC---C-H--
Confidence 3578888888888753 3344443322 5788999987776 688888874 4444555553211 1 1
Q ss_pred hHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcc
Q 013292 93 NADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGA 172 (446)
Q Consensus 93 ~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~ 172 (446)
. |-+.+.+ ..+....+.-++.+|+++.. +-++|..-- .|| |+
T Consensus 268 ---~-ILk~M~R--------------------~yt~e~~~~~i~k~R~~~Pd------~~i~tDiIV-----GFP---gE 309 (437)
T COG0621 268 ---R-ILKRMKR--------------------GYTVEEYLEIIEKLRAARPD------IAISTDIIV-----GFP---GE 309 (437)
T ss_pred ---H-HHHHhCC--------------------CcCHHHHHHHHHHHHHhCCC------ceEeccEEE-----ECC---CC
Confidence 0 2223322 23567778888888888754 444444222 244 22
Q ss_pred cccchhhhhHhHHHHHHhcCCCcccccCCCcc
Q 013292 173 FNSSHAHFLKPLLEFLADNQSPFMIDIYPYYA 204 (446)
Q Consensus 173 F~~~~~~~~~~ll~fL~~~~d~~~vN~yPyf~ 204 (446)
-.+|+. ..++|+. ..-|=.+|+++|=.
T Consensus 310 TeedFe----~tl~lv~-e~~fd~~~~F~YSp 336 (437)
T COG0621 310 TEEDFE----ETLDLVE-EVRFDRLHVFKYSP 336 (437)
T ss_pred CHHHHH----HHHHHHH-HhCCCEEeeeecCC
Confidence 233332 3345443 45677888887633
No 70
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=37.11 E-value=65 Score=27.56 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCEEEEe--cCCh---HHHHHHHhCCCEEEE
Q 013292 42 KVAQLVKQHNIKYLRIY--DSNI---QVLKAFANTGVELMI 77 (446)
Q Consensus 42 ~v~~~lk~~~i~~VRiY--~~d~---~vL~A~a~~gi~V~v 77 (446)
.+.+.++++|+..|+|+ ...+ .+|++|..+|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566778999999988 3332 689999999998653
No 71
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=36.70 E-value=68 Score=30.48 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=35.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEecCCCC
Q 013292 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSD 83 (446)
Q Consensus 44 ~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vgv~n~~ 83 (446)
+++|+..||+.||+-..+|.=..++.+.||+|.--++...
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 5789999999999999999989999999999998888753
No 72
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=34.99 E-value=1.1e+02 Score=30.67 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=42.7
Q ss_pred HHHHHh--CCCEEEEecCC----CCChhhhhhhHhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHH
Q 013292 65 LKAFAN--TGVELMIGIPN----SDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNV 138 (446)
Q Consensus 65 L~A~a~--~gi~V~vgv~n----~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~v 138 (446)
|.+++. .+++|++.|.. +....+..+++.-..+++ ++..++..-+..+|-+==|-..........+...|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 556665 48999998865 223345444433333333 33222222235555553333322112345688889999
Q ss_pred HHHHHHc
Q 013292 139 FTALKKA 145 (446)
Q Consensus 139 k~aL~~~ 145 (446)
|+.|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999764
No 73
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.22 E-value=28 Score=29.23 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=6.5
Q ss_pred CccchhHHHHHH
Q 013292 1 MARGFELFFAIS 12 (446)
Q Consensus 1 ~~~~~~~~~~~~ 12 (446)
||+...|+++++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 777654444433
No 74
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=33.98 E-value=61 Score=32.64 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=26.8
Q ss_pred CccEEEeeeccCCCCCC-CCC-------------------CCCHHHHHHHHHHHHHHHHh
Q 013292 256 TIKIMVTETGWPSKGSP-KEK-------------------AATPDNAQIYNTNLIRHVIN 295 (446)
Q Consensus 256 ~~~i~VsEtGWPs~G~~-~~~-------------------~as~~na~~y~~~lv~~~~s 295 (446)
.|||+++|.|||+.-.. +++ .-.-.-|++|++.++.+...
T Consensus 206 sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~~ 265 (299)
T PF13547_consen 206 SKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWDD 265 (299)
T ss_pred CcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 69999999999995322 221 11233478888888877654
No 75
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=33.78 E-value=95 Score=27.71 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCEEEEe--c--------CCh---HHHHHHHhCCCEEE
Q 013292 41 DKVAQLVKQHNIKYLRIY--D--------SNI---QVLKAFANTGVELM 76 (446)
Q Consensus 41 ~~v~~~lk~~~i~~VRiY--~--------~d~---~vL~A~a~~gi~V~ 76 (446)
+++.+.++++||+.|+++ . .-+ .+|++|+..||+|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 345667788999999888 3 333 68999999999974
No 76
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=33.34 E-value=3.5e+02 Score=26.28 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCCCEEEEe-cC--Ch-HHHHHHHhCCCEEEEecCCCCChhhhhhhHhHHHHHHhhccccCCC-CeEEEE
Q 013292 40 PDKVAQLVKQHNIKYLRIY-DS--NI-QVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPA-AKITYI 114 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRiY-~~--d~-~vL~A~a~~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~-~~I~~I 114 (446)
|++.++.+.+.|.+.|=+- .+ ++ .+|+.++..|+.|-+|+-...-..+. .+ .+|++. +.|.-.
T Consensus 80 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~--------~i----~~~l~~vD~VLiM 147 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPIS--------LL----EPYLDQIDLIQIL 147 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHH--------HH----HHHHhhcCEEEEE
Confidence 7777777777777766554 22 22 56788888898555555443222221 11 122221 334444
Q ss_pred EeccccccCCCCChhhHHHHHHHHHHHHHHcCCC
Q 013292 115 TVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLH 148 (446)
Q Consensus 115 ~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~ 148 (446)
.| |+=..+....+..+..|+.+|+.+.+.|++
T Consensus 148 tV--~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 148 TL--DPRTGTKAPSDLILDRVIQVENRLGNRRVE 179 (228)
T ss_pred EE--CCCCCCccccHHHHHHHHHHHHHHHhcCCC
Confidence 44 333344455677899999999999988875
No 77
>CHL00041 rps11 ribosomal protein S11
Probab=31.90 E-value=1.1e+02 Score=26.50 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCEEEEec--CC---hHHHHHHHhCCCEEE
Q 013292 42 KVAQLVKQHNIKYLRIYD--SN---IQVLKAFANTGVELM 76 (446)
Q Consensus 42 ~v~~~lk~~~i~~VRiY~--~d---~~vL~A~a~~gi~V~ 76 (446)
++.+.++++|++.|+|+= .. ..+|++|...||+|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345667788999999883 32 368999999999874
No 78
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.47 E-value=6.5e+02 Score=26.62 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=31.4
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHHhcCCCcccccCCCc
Q 013292 126 NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYY 203 (446)
Q Consensus 126 ~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~~vN~yPyf 203 (446)
.+...++.+++.+|++. . .+.+++..-.+ || |+-. +-+...++|+.+. .+-.+++|+|-
T Consensus 269 ~~~~~~~~~v~~lr~~~----~--~i~i~~d~IvG-----~P---gEt~----ed~~~tl~~i~~l-~~~~i~~f~ys 327 (440)
T PRK14334 269 YRREKYLERIAEIREAL----P--DVVLSTDIIVG-----FP---GETE----EDFQETLSLYDEV-GYDSAYMFIYS 327 (440)
T ss_pred CCHHHHHHHHHHHHHhC----C--CcEEEEeEEEE-----CC---CCCH----HHHHHHHHHHHhc-CCCEeeeeEee
Confidence 45677888888877663 2 24455543222 33 1112 2245567776553 35566677653
No 79
>PRK05309 30S ribosomal protein S11; Validated
Probab=30.70 E-value=1.2e+02 Score=26.84 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCEEEEec--CC---hHHHHHHHhCCCEEE
Q 013292 42 KVAQLVKQHNIKYLRIYD--SN---IQVLKAFANTGVELM 76 (446)
Q Consensus 42 ~v~~~lk~~~i~~VRiY~--~d---~~vL~A~a~~gi~V~ 76 (446)
.+.+.++++|++.|+|+= .. ..+|++|...|++|.
T Consensus 68 ~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 68 DAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345667789999999993 32 368999999999865
No 80
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=30.30 E-value=1.4e+02 Score=30.35 Aligned_cols=40 Identities=5% Similarity=0.064 Sum_probs=31.5
Q ss_pred HHHHhCCCCEEEEecCChH-HHHHHHhCCCEEEEecCCCCCh
Q 013292 45 QLVKQHNIKYLRIYDSNIQ-VLKAFANTGVELMIGIPNSDLL 85 (446)
Q Consensus 45 ~~lk~~~i~~VRiY~~d~~-vL~A~a~~gi~V~vgv~n~~~~ 85 (446)
..|+..|.+. .+-..|.. +.+++++..+.++++.|.+..+
T Consensus 52 ~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p~~~ 92 (302)
T COG2113 52 KILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLPTTP 92 (302)
T ss_pred HHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecCCCh
Confidence 4678889876 77777764 4688998999999999987553
No 81
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=30.11 E-value=67 Score=34.01 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=31.3
Q ss_pred HHHHHHH----HHhCCCCEEEEecC--Ch----HHHHHHHhCCCEEEEecCCC
Q 013292 40 PDKVAQL----VKQHNIKYLRIYDS--NI----QVLKAFANTGVELMIGIPNS 82 (446)
Q Consensus 40 ~~~v~~~----lk~~~i~~VRiY~~--d~----~vL~A~a~~gi~V~vgv~n~ 82 (446)
+++||+. .-.+||+.+|+||+ |+ ..++|.++.|..+...+...
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT 148 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYT 148 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEec
Confidence 3566653 33589999999998 44 46888999998877776543
No 82
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=30.04 E-value=1e+02 Score=29.85 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCEEEEecCCCCC---hhhhhhhHhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHH
Q 013292 63 QVLKAFANTGVELMIGIPNSDL---LPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVF 139 (446)
Q Consensus 63 ~vL~A~a~~gi~V~vgv~n~~~---~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk 139 (446)
..+++++..|+||++.|..... ..+.++++....+++..+ .++..-.+.+|-+==|-.... ......-|+.+|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv-~~~~~~~~DGIdiDwE~~~~~---~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKII-NYVVSYNLDGIDVDLEGPDVT---FGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHH-HHHHHhCCCceeEEeeccCcc---HhHHHHHHHHHH
Confidence 3466777789999988865432 224445444444443333 222111233444333432211 345677899999
Q ss_pred HHHHHcCC
Q 013292 140 TALKKAGL 147 (446)
Q Consensus 140 ~aL~~~g~ 147 (446)
++|.+.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99987664
No 83
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=29.88 E-value=69 Score=27.46 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=19.7
Q ss_pred CHHHHHHHHHhCC---CCEEEEecCChHH
Q 013292 39 TPDKVAQLVKQHN---IKYLRIYDSNIQV 64 (446)
Q Consensus 39 s~~~v~~~lk~~~---i~~VRiY~~d~~v 64 (446)
.|+++.++|+.+. =.++||||.|..+
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~L 30 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGNL 30 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCCE
Confidence 4678888887753 3799999998643
No 84
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.75 E-value=5.6e+02 Score=26.95 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=32.9
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHHhcCCCcccccCCCc
Q 013292 126 NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYY 203 (446)
Q Consensus 126 ~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~~vN~yPyf 203 (446)
.....+..+++.+|+++ ..+.+++..-.+ || |+- .+-+...++|+.+. .+-.+|+++|-
T Consensus 256 ~~~~~~~~~i~~lr~~~------pgi~i~~d~IvG-----fP---GET----~edf~~tl~fi~~~-~~~~~~v~~ys 314 (418)
T PRK14336 256 YTNQQYRELVERLKTAM------PDISLQTDLIVG-----FP---SET----EEQFNQSYKLMADI-GYDAIHVAAYS 314 (418)
T ss_pred CCHHHHHHHHHHHHhhC------CCCEEEEEEEEE-----CC---CCC----HHHHHHHHHHHHhc-CCCEEEeeecC
Confidence 45778888888888774 235565554332 44 121 22345677777654 33345555543
No 85
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=28.08 E-value=1e+02 Score=33.67 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=47.8
Q ss_pred CCCCccEEEeeeccCCCCCCC--C-----CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeccccc-ccCCCc
Q 013292 253 NFRTIKIMVTETGWPSKGSPK--E-----KAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNEN-RKPGLE 324 (446)
Q Consensus 253 g~~~~~i~VsEtGWPs~G~~~--~-----~~as~~na~~y~~~lv~~~~s~~gTp~rpg~~~~~yiF~~FdE~-~K~g~~ 324 (446)
.+++.+|.|+|-|-+...+.. . ...=++..+.|++.+.+.+.. .|-- -.-+|+.++-|-. |..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn-----v~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN-----VKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc-----eeeEEEeEcccchhhhcC--
Confidence 378999999999998764331 1 123344455666666665543 2221 2357888888854 6665
Q ss_pred ccceeeeecCC
Q 013292 325 SERNWGLFYPD 335 (446)
Q Consensus 325 ~E~~wGlf~~d 335 (446)
..-.|||++.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 56789999864
No 86
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=27.81 E-value=1.8e+02 Score=24.45 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=27.0
Q ss_pred CceeeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEe
Q 013292 23 GSTIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIY 58 (446)
Q Consensus 23 ~~~~GvnYg~~~~n~ps~~~v~~~lk~~~i~~VRiY 58 (446)
...+-|.-...+...++.+++.+.|++.||..-++-
T Consensus 31 ~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~ 66 (101)
T PF13721_consen 31 DPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIE 66 (101)
T ss_pred CCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEE
Confidence 345777777767778888889999999988655544
No 87
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=27.60 E-value=1.5e+02 Score=23.43 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCEEEEecCChHHHHHHHhCCCEEEEe
Q 013292 40 PDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIG 78 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRiY~~d~~vL~A~a~~gi~V~vg 78 (446)
....+++|...+++.|=.-..-+...+.|...||+|+.+
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc
Confidence 456788888899999988888899999999999999999
No 88
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.13 E-value=7.6e+02 Score=26.01 Aligned_cols=75 Identities=8% Similarity=0.106 Sum_probs=40.7
Q ss_pred EEEEeccccccC-------CCCChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhH
Q 013292 112 TYITVGAEVTES-------TDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPL 184 (446)
Q Consensus 112 ~~I~VGNEvl~~-------~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~l 184 (446)
..+.+|=|-... ...+......+++.+|+.+ ..+.|++..-. .|| |+- .+-+...
T Consensus 251 ~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~Iv-----GfP---gET----~edf~~t 312 (434)
T PRK14330 251 KSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV------PDASISSDIIV-----GFP---TET----EEDFMET 312 (434)
T ss_pred CceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEE-----ECC---CCC----HHHHHHH
Confidence 456666555432 1245667778888887763 13566665433 233 111 2335567
Q ss_pred HHHHHhcCCCcccccCCCccc
Q 013292 185 LEFLADNQSPFMIDIYPYYAY 205 (446)
Q Consensus 185 l~fL~~~~d~~~vN~yPyf~~ 205 (446)
++|+.+. .+-.+++++|-..
T Consensus 313 l~fi~~~-~~~~~~~~~~sp~ 332 (434)
T PRK14330 313 VDLVEKA-QFERLNLAIYSPR 332 (434)
T ss_pred HHHHHhc-CCCEEeeeeccCC
Confidence 7777654 3445566655444
No 89
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=26.27 E-value=1.2e+02 Score=24.15 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHhCCCCEEEEecC
Q 013292 38 PTPDKVAQLVKQHNIKYLRIYDS 60 (446)
Q Consensus 38 ps~~~v~~~lk~~~i~~VRiY~~ 60 (446)
.+.+++.+.|++.|. .||=...
T Consensus 29 ~~~~~~~~~l~~~G~-~v~~ve~ 50 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGY-QVREVEF 50 (83)
T ss_pred CCHHHHHHHHHhcCC-ceEEEEE
Confidence 467888999999988 7777666
No 90
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=25.57 E-value=2.8e+02 Score=27.54 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=58.0
Q ss_pred HhCCCEEEEecCCCCC-----hhhhhhhHhHHHHHHhhccccCCCCeEEEEEeccccccCC--CCChhhHHHHHHHHHHH
Q 013292 69 ANTGVELMIGIPNSDL-----LPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTEST--DNSSSLVVPAMQNVFTA 141 (446)
Q Consensus 69 a~~gi~V~vgv~n~~~-----~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~--~~~~~~l~~ai~~vk~a 141 (446)
+..|++|++.|..... ..+..+.+..... .++|..++..-.+.+|-+==|-.... ......+..-|+.+|++
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f-~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~ 148 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNF-INNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKA 148 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHH-HHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHHH-HHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhh
Confidence 3569999887765422 2233333222222 22332222212355555533333221 23467788899999999
Q ss_pred HHHcCCC-CceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHHhcCCCcccccCCCcc
Q 013292 142 LKKAGLH-KRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYA 204 (446)
Q Consensus 142 L~~~g~~-~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~~vN~yPyf~ 204 (446)
|++.+-. +.+.++.+...... ....+ -+.-|....|++.+-.|-|..
T Consensus 149 l~~~~~~~~~~~ls~a~p~~~~--------------~~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 149 LKRANRSGKGYILSVAVPPSPD--------------YYDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHSTSEEEEEEECSHH--------------HHTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hcccccccceeEEeeccccccc--------------ccccc--ccccccccccccccccccCCC
Confidence 9885110 01335544222111 00011 234456678999999986655
No 91
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=24.97 E-value=4.4e+02 Score=27.06 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=37.9
Q ss_pred HHHHHHhCCCCEEEEecCC---hHHHHHHHhCCCEEEEecCCCCChhhhhhhHhHHHHHH
Q 013292 43 VAQLVKQHNIKYLRIYDSN---IQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLK 99 (446)
Q Consensus 43 v~~~lk~~~i~~VRiY~~d---~~vL~A~a~~gi~V~vgv~n~~~~~~~~~~~~a~~wv~ 99 (446)
-+++|.+.++..+||=+.| -..|++++++|..|++.-....+. +...|.++++
T Consensus 101 svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~----Ei~~Av~~i~ 156 (329)
T TIGR03569 101 SADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLE----EIEAAVGVLR 156 (329)
T ss_pred HHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHH----HHHHHHHHHH
Confidence 4567777778888887654 468999999999999987654333 3455556665
No 92
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.95 E-value=8.3e+02 Score=25.76 Aligned_cols=61 Identities=8% Similarity=0.177 Sum_probs=33.1
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHHhcCCCcccccCCCccc
Q 013292 126 NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205 (446)
Q Consensus 126 ~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~~vN~yPyf~~ 205 (446)
.+...++.+++.+|+++ ..+.+++..-. .|| |+-. +-+...++|+.+. .+-.+++++|--.
T Consensus 279 ~~~~~~~~~i~~lr~~~------~~i~i~~d~Iv-----G~P---gET~----ed~~~tl~~i~~l-~~~~~~~~~~sp~ 339 (439)
T PRK14328 279 YTREYYLELVEKIKSNI------PDVAITTDIIV-----GFP---GETE----EDFEETLDLVKEV-RYDSAFTFIYSKR 339 (439)
T ss_pred CCHHHHHHHHHHHHHhC------CCCEEEEEEEE-----ECC---CCCH----HHHHHHHHHHHhc-CCCcccceEecCC
Confidence 45677888888887763 13555544322 233 1111 2345567777544 3556677765433
No 93
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=24.56 E-value=1.6e+02 Score=26.87 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCEEEEec--------CC-----hHHHHHHHhCCCEEEE
Q 013292 41 DKVAQLVKQHNIKYLRIYD--------SN-----IQVLKAFANTGVELMI 77 (446)
Q Consensus 41 ~~v~~~lk~~~i~~VRiY~--------~d-----~~vL~A~a~~gi~V~v 77 (446)
+++++.++++||+.|+|+= -- ..+|++|...||+|..
T Consensus 79 ~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 79 QDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 3456677889999998885 22 2689999999999753
No 94
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.53 E-value=3.1e+02 Score=25.66 Aligned_cols=57 Identities=9% Similarity=0.147 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHcCCCCccEEEeee-ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 013292 238 FDAQIDSIYFALMALNFRTIKIMVTET-GWPSKGSPKEKAATPDNAQIYNTNLIRHVIN 295 (446)
Q Consensus 238 fda~~Da~~~a~~~~g~~~~~i~VsEt-GWPs~G~~~~~~as~~na~~y~~~lv~~~~s 295 (446)
|...++.++..+. .++|++||++.|. ++|..--........+..+...+..++.+.+
T Consensus 76 ~~~~~~~fv~~iR-~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 76 FRERLDGFVKTIR-EAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp HHHHHHHHHHHHH-TT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444553 4689999999994 5555422223456777777788888888765
No 95
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=23.49 E-value=1.8e+02 Score=31.48 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCCEEE-------Eec------CCh-------HHHHHHHhCCCEEEEecCCCCChh
Q 013292 40 PDKVAQLVKQHNIKYLR-------IYD------SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VR-------iY~------~d~-------~vL~A~a~~gi~V~vgv~n~~~~~ 86 (446)
-++++++||++|++.-| |+- .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 45789999998877665 441 243 578999999999999998766653
No 96
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=23.30 E-value=2.3e+02 Score=30.14 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCCEEEEe--cCCh----------------HHHHHHHhCCC-----EEEEecCCCCChhhhhhhHhHHHH
Q 013292 41 DKVAQLVKQHNIKYLRIY--DSNI----------------QVLKAFANTGV-----ELMIGIPNSDLLPFAQFQSNADSW 97 (446)
Q Consensus 41 ~~v~~~lk~~~i~~VRiY--~~d~----------------~vL~A~a~~gi-----~V~vgv~n~~~~~~~~~~~~a~~w 97 (446)
++.++.|++.|+++|-|= +.++ ..++.++..|+ .+|.|+|.+....+..+.+.+.+.
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l 230 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAEL 230 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhc
Confidence 466788888888876541 2221 23455556666 478899987766665544332221
Q ss_pred HHhhccccCCCCeEEEEEe---------ccccccCC-CCChhhHHHHHHHHHHHHHHcCCC
Q 013292 98 LKNSILPYYPAAKITYITV---------GAEVTEST-DNSSSLVVPAMQNVFTALKKAGLH 148 (446)
Q Consensus 98 v~~~v~~~~~~~~I~~I~V---------GNEvl~~~-~~~~~~l~~ai~~vk~aL~~~g~~ 148 (446)
. + ..|..... +.. +... ..+..+.+.-++.+...|.++||.
T Consensus 231 -----~---~-~~is~y~L~~~p~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 231 -----N---P-DRLAVFNYAHVPWVKPAQRK-IPEAALPSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred -----C---C-CEEEEecCccccchhHHHhc-ccccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 1 1 11211111 100 0001 123556677788889999999985
No 97
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.99 E-value=6.6e+02 Score=23.91 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC----hHHHHHHHh--CCCEEEEecCCCCChhhhhhhHhHHHHHHhhccccCCCCeE
Q 013292 38 PTPDKVAQLVKQHNIKYLRIYDSN----IQVLKAFAN--TGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKI 111 (446)
Q Consensus 38 ps~~~v~~~lk~~~i~~VRiY~~d----~~vL~A~a~--~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I 111 (446)
.+|.++.+.++. |.+.||+|=++ +.-++++++ .++++| +...+. .+...+|++. ..
T Consensus 109 ~TptEi~~A~~~-Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~---ptGGV~-----~~N~~~~l~a---------Ga 170 (204)
T TIGR01182 109 ATPSEIMLALEL-GITALKLFPAEVSGGVKMLKALAGPFPQVRFC---PTGGIN-----LANVRDYLAA---------PN 170 (204)
T ss_pred CCHHHHHHHHHC-CCCEEEECCchhcCCHHHHHHHhccCCCCcEE---ecCCCC-----HHHHHHHHhC---------CC
Confidence 578887776654 89999999665 677888886 566666 323332 1345567653 34
Q ss_pred EEEEeccccccC
Q 013292 112 TYITVGAEVTES 123 (446)
Q Consensus 112 ~~I~VGNEvl~~ 123 (446)
.++.+|+..+..
T Consensus 171 ~~vg~Gs~L~~~ 182 (204)
T TIGR01182 171 VACGGGSWLVPK 182 (204)
T ss_pred EEEEEChhhcCc
Confidence 678888887753
No 98
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=22.79 E-value=1.8e+02 Score=29.51 Aligned_cols=222 Identities=15% Similarity=0.171 Sum_probs=107.7
Q ss_pred HHHHHHHhCCCEEE--EecCCCCChhhhh------------hhHhHHHHHHhhccccCCCCeEEEEEeccccccCCC---
Q 013292 63 QVLKAFANTGVELM--IGIPNSDLLPFAQ------------FQSNADSWLKNSILPYYPAAKITYITVGAEVTESTD--- 125 (446)
Q Consensus 63 ~vL~A~a~~gi~V~--vgv~n~~~~~~~~------------~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~--- 125 (446)
.++.-+...||+|- .=||-...+..-. -.+....+|++.+.+|....+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~ 142 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPG 142 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccc
Confidence 45666778888764 2334433332111 123445666666666532147888889999998642
Q ss_pred ---CC-------hhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHHhcCCCc
Q 013292 126 ---NS-------SSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPF 195 (446)
Q Consensus 126 ---~~-------~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~ 195 (446)
.+ ...+..+.+-.|++.. .++.-.-+- +++. + .-+.-+..+++.|.+.+-+
T Consensus 143 ~~r~~~~~~~lG~~yi~~aF~~A~~~~P------~a~L~~NDy-~~~~----~-------~k~~~~~~lv~~l~~~gvp- 203 (320)
T PF00331_consen 143 GLRDSPWYDALGPDYIADAFRAAREADP------NAKLFYNDY-NIES----P-------AKRDAYLNLVKDLKARGVP- 203 (320)
T ss_dssp SBCTSHHHHHHTTCHHHHHHHHHHHHHT------TSEEEEEES-STTS----T-------HHHHHHHHHHHHHHHTTHC-
T ss_pred cccCChhhhcccHhHHHHHHHHHHHhCC------CcEEEeccc-cccc----h-------HHHHHHHHHHHHHHhCCCc-
Confidence 11 2456667777777764 233333221 1111 1 1122345566666555322
Q ss_pred ccccCCCccccCCCCccccccccccCCCceecCCCCcccchhHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCC
Q 013292 196 MIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPKEK 275 (446)
Q Consensus 196 ~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~~~~~~y~n~fda~~Da~~~a~~~~g~~~~~i~VsEtGWPs~G~~~~~ 275 (446)
+|=-=|| ++..... . .+.+...|+++.--+++|.|||.-=........
T Consensus 204 ------------------IdgIG~Q---~H~~~~~----~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~- 251 (320)
T PF00331_consen 204 ------------------IDGIGLQ---SHFDAGY----P------PEQIWNALDRFASLGLPIHITELDVRDDDNPPD- 251 (320)
T ss_dssp ------------------S-EEEEE---EEEETTS----S------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC-
T ss_pred ------------------cceechh---hccCCCC----C------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc-
Confidence 1111111 1221110 0 233334445554456999999985333221100
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeccccc-ccCCCcccceeeeecCCCCeeee
Q 013292 276 AATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNEN-RKPGLESERNWGLFYPDQTSVYN 341 (446)
Q Consensus 276 ~as~~na~~y~~~lv~~~~s~~gTp~rpg~~~~~yiF~~FdE~-~K~g~~~E~~wGlf~~d~~~ky~ 341 (446)
....+.++.+++.+++.+.+. | |..-..+.+..+.|.. |.+... -.+=+||+.|.+||-.
T Consensus 252 ~~~~~~qA~~~~~~~~~~~~~---~--~~~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 252 AEEEEAQAEYYRDFLTACFSH---P--PAAVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---T--HCTEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred hHHHHHHHHHHHHHHHHHHhC---C--ccCCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 234667888999999998873 2 0111233444555543 654311 2234688888888753
No 99
>PRK14057 epimerase; Provisional
Probab=22.67 E-value=6.2e+02 Score=25.09 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCCCEEEEe-cC--Ch-HHHHHHHhCCCE-------EEEecCCCCChhhhhhhHhHHHHHHhhccccCCC
Q 013292 40 PDKVAQLVKQHNIKYLRIY-DS--NI-QVLKAFANTGVE-------LMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPA 108 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRiY-~~--d~-~vL~A~a~~gi~-------V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~ 108 (446)
|++.++.+.+.|.+.|=+- .+ ++ .+|+.++..|++ +-+||-...-..+ + .++ .+.+..
T Consensus 87 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~----e----~i~-~~l~~v-- 155 (254)
T PRK14057 87 QWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL----D----VII-PILSDV-- 155 (254)
T ss_pred HHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH----H----HHH-HHHHhC--
Confidence 6677777766677665553 22 22 567777888875 4455544322112 1 111 111111
Q ss_pred CeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCC
Q 013292 109 AKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLH 148 (446)
Q Consensus 109 ~~I~~I~VGNEvl~~~~~~~~~l~~ai~~vk~aL~~~g~~ 148 (446)
+.|.-..| |+=..+....+..+..|+.+|+.+.+.|++
T Consensus 156 D~VLvMtV--~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~ 193 (254)
T PRK14057 156 EVIQLLAV--NPGYGSKMRSSDLHERVAQLLCLLGDKREG 193 (254)
T ss_pred CEEEEEEE--CCCCCchhccHHHHHHHHHHHHHHHhcCCC
Confidence 23433333 332334455678899999999999988875
No 100
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.54 E-value=6.8e+02 Score=23.87 Aligned_cols=88 Identities=13% Similarity=0.327 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC---hHHHHHHHh--CCCEEEEecCCCCChhhhhhhHhHHHHHHhhccccCCCCeEE
Q 013292 38 PTPDKVAQLVKQHNIKYLRIYDSN---IQVLKAFAN--TGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKIT 112 (446)
Q Consensus 38 ps~~~v~~~lk~~~i~~VRiY~~d---~~vL~A~a~--~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~ 112 (446)
-+|+++.+.+ +.|.+.|++|-++ ++-|+++++ .+++++. ...+. .+.+.+|++. .+.
T Consensus 117 ~T~~E~~~A~-~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI~-----~~N~~~~l~a---------Ga~ 178 (213)
T PRK06552 117 MTVTEIVTAL-EAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGVN-----LDNVKDWFAA---------GAD 178 (213)
T ss_pred CCHHHHHHHH-HcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCCC-----HHHHHHHHHC---------CCc
Confidence 4678877665 4799999999655 466777774 3366542 22231 2344566652 456
Q ss_pred EEEeccccccCC-CCChhhHHHHHHHHHHHHH
Q 013292 113 YITVGAEVTEST-DNSSSLVVPAMQNVFTALK 143 (446)
Q Consensus 113 ~I~VGNEvl~~~-~~~~~~l~~ai~~vk~aL~ 143 (446)
++.||...+... ...+..+....+.+++.++
T Consensus 179 ~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 179 AVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 889998876432 2345667777777776664
No 101
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.10 E-value=8e+02 Score=24.65 Aligned_cols=71 Identities=7% Similarity=-0.075 Sum_probs=39.5
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCC--CCcccc--cchhhhhHhHHHHHHhcCCCcccccCCC
Q 013292 127 SSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPP--SAGAFN--SSHAHFLKPLLEFLADNQSPFMIDIYPY 202 (446)
Q Consensus 127 ~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pP--S~~~F~--~~~~~~~~~ll~fL~~~~d~~~vN~yPy 202 (446)
+..+++..++++|+. .||+..-....-|.....+ ..+.|. ++.=+-.+.+++-|.+.+=-+++++.|+
T Consensus 22 ~~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 456677767666654 4666665444333221100 011221 1111224678888888888899999998
Q ss_pred ccc
Q 013292 203 YAY 205 (446)
Q Consensus 203 f~~ 205 (446)
...
T Consensus 94 v~~ 96 (317)
T cd06598 94 VLK 96 (317)
T ss_pred ccC
Confidence 764
No 102
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=21.84 E-value=3.2e+02 Score=29.44 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHHhCCCEEEEecCCCCChh
Q 013292 40 PDKVAQLVKQHNIKYLRI-------YD-----SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (446)
Q Consensus 40 ~~~v~~~lk~~~i~~VRi-------Y~-----~d~-------~vL~A~a~~gi~V~vgv~n~~~~~ 86 (446)
-++++++|+++|++.-|+ +- .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 457889999988776654 42 132 578999999999999998766654
No 103
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.72 E-value=9.9e+02 Score=25.44 Aligned_cols=198 Identities=14% Similarity=0.185 Sum_probs=94.3
Q ss_pred EecCCCCCCCCHHHHHHH---HHhCCCCEEEEecCC-----------hHHHHHHHh-CCC-EEEEecCCCCChhhhhhhH
Q 013292 29 CYGRNADDLPTPDKVAQL---VKQHNIKYLRIYDSN-----------IQVLKAFAN-TGV-ELMIGIPNSDLLPFAQFQS 92 (446)
Q Consensus 29 nYg~~~~n~ps~~~v~~~---lk~~~i~~VRiY~~d-----------~~vL~A~a~-~gi-~V~vgv~n~~~~~~~~~~~ 92 (446)
.+|+. ..-++++|++. |...|++.|.+.+.| ++.|+++.+ .++ .+-++..++. .+..+
T Consensus 176 ~rG~~--rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--~~~~e-- 249 (449)
T PRK14332 176 TRGRE--RSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPK--DFPDH-- 249 (449)
T ss_pred ccCCc--ccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcc--cCCHH--
Confidence 34544 23457777654 445789999888654 234555543 232 2333333321 12111
Q ss_pred hHHHHHHhhccccCCCCeEEEEEec-----ccccc--CCCCChhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccC
Q 013292 93 NADSWLKNSILPYYPAAKITYITVG-----AEVTE--STDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRS 165 (446)
Q Consensus 93 ~a~~wv~~~v~~~~~~~~I~~I~VG-----NEvl~--~~~~~~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~ 165 (446)
+.+.+... + .....|.+| +++|- +...+..+...+++.+|++.. .+.++|..-. .
T Consensus 250 -----ll~~m~~~-~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td~Iv-----G 311 (449)
T PRK14332 250 -----LLSLMAKN-P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTDIIV-----G 311 (449)
T ss_pred -----HHHHHHhC-C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEEEEe-----e
Confidence 11122211 1 123466666 33332 223567888899988888742 3555543222 2
Q ss_pred CCCCCcccccchhhhhHhHHHHHHhcCCCcccccCCCccccCCCCccccccccccCCCceecCCCCcccchhHHHHHHHH
Q 013292 166 FPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSI 245 (446)
Q Consensus 166 ~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~~vN~yPyf~~~~~~~~~~~d~A~f~~~~g~~d~~~~~~y~n~fda~~Da~ 245 (446)
|| |+-.+ -+...++|+.+. .|=.+++|+|-..-+.|. +..+. ..+.+.....++..+.+-|-.-.
T Consensus 312 fP---gET~e----df~~tl~~v~~l-~~~~~~~f~ys~~~GT~a-----~~~~~--~~v~~~~~~~R~~~l~~~~~~~~ 376 (449)
T PRK14332 312 FP---NETEE----EFEDTLAVVREV-QFDMAFMFKYSEREGTMA-----KRKLP--DNVPEEVKSARLTKLVDLQTSIS 376 (449)
T ss_pred CC---CCCHH----HHHHHHHHHHhC-CCCEEEEEEecCCCCChh-----HHhCc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 44 22222 345566766543 445667776544432221 11121 11222233344555555554433
Q ss_pred HHHHHHcCCCCccEEEeeec
Q 013292 246 YFALMALNFRTIKIMVTETG 265 (446)
Q Consensus 246 ~~a~~~~g~~~~~i~VsEtG 265 (446)
....+++=...++|+|-|.+
T Consensus 377 ~~~~~~~vG~~~~vlve~~~ 396 (449)
T PRK14332 377 HEQNRARIGRVYSILIENTS 396 (449)
T ss_pred HHHHHHhcCCEEEEEEEecc
Confidence 44444443356888887644
No 104
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=21.61 E-value=1.7e+02 Score=22.85 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=28.9
Q ss_pred HhHHHHHHhhccccCCCCeEEEEEeccccccCCC---CChhhHHHHHHHHHHHHHHc
Q 013292 92 SNADSWLKNSILPYYPAAKITYITVGAEVTESTD---NSSSLVVPAMQNVFTALKKA 145 (446)
Q Consensus 92 ~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~---~~~~~l~~ai~~vk~aL~~~ 145 (446)
..-..|+++||.- |+|.+++.+ ...+.|+|++...++.++..
T Consensus 11 ~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 11 EILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 3445799887743 556666542 34778999999988888643
No 105
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=21.53 E-value=2.6e+02 Score=27.70 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=21.7
Q ss_pred eEEEEEeccccccCCC--CChhhHHHHHHHHHHHHHHcCCC
Q 013292 110 KITYITVGAEVTESTD--NSSSLVVPAMQNVFTALKKAGLH 148 (446)
Q Consensus 110 ~I~~I~VGNEvl~~~~--~~~~~l~~ai~~vk~aL~~~g~~ 148 (446)
...-|+||+|+|...- ..++.| -+.|...|+.
T Consensus 3 ~a~iI~vG~ElL~G~ivdtNa~~l-------a~~L~~~G~~ 36 (255)
T COG1058 3 KAEIIAVGDELLSGRIVDTNAAFL-------ADELTELGVD 36 (255)
T ss_pred eEEEEEEccceecCceecchHHHH-------HHHHHhcCce
Confidence 3567899999998752 234443 3567788874
No 106
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.52 E-value=2e+02 Score=26.58 Aligned_cols=60 Identities=25% Similarity=0.447 Sum_probs=39.7
Q ss_pred EEEEecCCh-HHHHH---H--H-hCCCEEEEecCCCCChhhhhhhHhHHHHHHhhccccCCCCeEEEEEeccccc
Q 013292 54 YLRIYDSNI-QVLKA---F--A-NTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVT 121 (446)
Q Consensus 54 ~VRiY~~d~-~vL~A---~--a-~~gi~V~vgv~n~~~~~~~~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl 121 (446)
.+.|||+.. +.++. + + ..|+-+|-++.|++ +++ +..+|+. .|..| .+.|+-.|.|||..=
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNee--Sf~----svqdw~t-qIkty-sw~naqvilvgnKCD 137 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE--SFN----SVQDWIT-QIKTY-SWDNAQVILVGNKCD 137 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH--HHH----HHHHHHH-Hheee-eccCceEEEEecccC
Confidence 566788874 33322 2 2 36788888888863 443 3457863 55554 789999999999763
No 107
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=20.44 E-value=6.2e+02 Score=26.59 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCceEEeeeecccccccCCCCCCcccccchhhhhHhHHHHHHhcCCCcccccCCCcc
Q 013292 128 SSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYA 204 (446)
Q Consensus 128 ~~~l~~ai~~vk~aL~~~g~~~~i~Vst~~~~~~l~~~~pPS~~~F~~~~~~~~~~ll~fL~~~~d~~~vN~yPyf~ 204 (446)
-..++..|+.+|++|.+.++. +-++.+..... ...| | +.-|.+..|++.|-.|=|+.
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~~--ls~av~~~~~~--------~~~~--d--------~~~l~~~vD~inlMtYD~~g 224 (413)
T cd02873 168 KEQFTALVRELKNALRPDGLL--LTLTVLPHVNS--------TWYF--D--------VPAIANNVDFVNLATFDFLT 224 (413)
T ss_pred HHHHHHHHHHHHHHhcccCcE--EEEEecCCchh--------cccc--C--------HHHHhhcCCEEEEEEecccC
Confidence 456888899999999877652 33322111100 0001 2 22345678999999996653
Done!