Query 013293
Match_columns 446
No_of_seqs 472 out of 2206
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 1.2E-52 2.5E-57 399.3 29.2 358 25-386 55-447 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 5.8E-47 1.2E-51 360.5 28.3 328 18-349 103-464 (476)
3 KOG1427 Uncharacterized conser 100.0 1.6E-43 3.5E-48 316.2 17.9 322 21-350 58-399 (443)
4 KOG1427 Uncharacterized conser 100.0 2.7E-42 5.8E-47 308.4 18.4 337 37-381 19-378 (443)
5 KOG0783 Uncharacterized conser 100.0 7.1E-29 1.5E-33 247.3 14.4 305 32-352 136-451 (1267)
6 KOG0783 Uncharacterized conser 99.9 2.2E-25 4.9E-30 222.5 15.1 271 85-360 136-417 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 2.8E-23 6E-28 214.8 22.1 337 21-380 481-870 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 4.2E-22 9.2E-27 206.2 23.3 281 17-317 523-856 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 4.2E-12 9.1E-17 87.8 5.4 50 298-347 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 1.4E-11 2.9E-16 85.2 5.2 50 246-295 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 8.1E-11 1.8E-15 70.9 4.5 30 334-363 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 8.2E-11 1.8E-15 70.9 3.9 30 282-311 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 1.7E-12 3.7E-17 132.3 -8.0 151 115-310 5-156 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 4.9E-12 1.1E-16 129.1 -6.7 174 18-197 13-199 (850)
15 PF11725 AvrE: Pathogenicity f 95.7 0.13 2.7E-06 58.3 12.7 291 20-351 490-815 (1774)
16 PF11725 AvrE: Pathogenicity f 94.5 0.97 2.1E-05 51.6 14.9 248 72-362 490-780 (1774)
17 KOG3669 Uncharacterized conser 94.4 2.4 5.3E-05 43.1 16.1 156 183-354 190-350 (705)
18 KOG4693 Uncharacterized conser 93.8 3.7 7.9E-05 38.0 14.7 64 80-150 80-147 (392)
19 KOG3669 Uncharacterized conser 92.1 9.8 0.00021 39.0 16.2 70 72-148 228-299 (705)
20 KOG0315 G-protein beta subunit 91.4 11 0.00025 34.5 24.1 108 125-254 85-196 (311)
21 KOG0291 WD40-repeat-containing 86.8 48 0.001 35.4 23.9 121 20-153 299-424 (893)
22 KOG0943 Predicted ubiquitin-pr 85.3 0.11 2.4E-06 56.5 -2.7 128 71-203 374-505 (3015)
23 COG4257 Vgb Streptogramin lyas 85.0 34 0.00074 32.1 13.9 142 27-200 62-205 (353)
24 KOG0646 WD40 repeat protein [G 84.1 48 0.001 33.2 16.7 115 18-149 123-245 (476)
25 KOG0943 Predicted ubiquitin-pr 83.8 0.089 1.9E-06 57.2 -4.1 131 17-152 372-506 (3015)
26 KOG0315 G-protein beta subunit 82.8 39 0.00086 31.2 19.9 163 15-202 5-196 (311)
27 COG4257 Vgb Streptogramin lyas 82.3 27 0.00058 32.8 11.5 108 20-149 94-206 (353)
28 KOG1900 Nuclear pore complex, 79.2 61 0.0013 36.9 14.9 214 84-306 93-339 (1311)
29 PHA03098 kelch-like protein; P 77.5 95 0.0021 32.3 15.8 18 134-152 335-352 (534)
30 KOG1900 Nuclear pore complex, 76.7 1.2E+02 0.0025 34.9 16.1 204 32-254 93-339 (1311)
31 PRK14131 N-acetylneuraminic ac 76.6 82 0.0018 31.1 18.0 18 134-151 131-148 (376)
32 PF07569 Hira: TUP1-like enhan 76.3 17 0.00037 33.1 8.6 30 123-152 12-41 (219)
33 cd00200 WD40 WD40 domain, foun 73.3 68 0.0015 28.7 34.3 148 18-202 9-164 (289)
34 PLN02153 epithiospecifier prot 73.1 94 0.002 30.2 25.3 17 134-151 130-146 (341)
35 PF07569 Hira: TUP1-like enhan 72.8 20 0.00043 32.7 8.1 79 71-150 13-94 (219)
36 PF04841 Vps16_N: Vps16, N-ter 71.9 1.1E+02 0.0025 30.6 19.0 70 124-201 81-153 (410)
37 smart00706 TECPR Beta propelle 68.2 12 0.00026 22.8 3.9 25 124-148 8-33 (35)
38 PHA02713 hypothetical protein; 65.6 1.2E+02 0.0026 31.9 13.2 17 135-151 344-360 (557)
39 TIGR03300 assembly_YfgL outer 65.5 1.4E+02 0.0031 29.2 13.5 55 238-304 321-376 (377)
40 TIGR01063 gyrA DNA gyrase, A s 63.7 2.4E+02 0.0052 31.2 22.0 211 26-255 544-769 (800)
41 TIGR01063 gyrA DNA gyrase, A s 63.4 2.4E+02 0.0053 31.2 21.9 213 79-307 545-769 (800)
42 KOG0291 WD40-repeat-containing 61.9 2.3E+02 0.0051 30.5 21.4 236 84-366 313-557 (893)
43 smart00706 TECPR Beta propelle 60.8 21 0.00046 21.6 4.0 24 177-200 9-33 (35)
44 TIGR03548 mutarot_permut cycli 58.2 1.8E+02 0.0038 27.9 12.7 18 134-152 116-133 (323)
45 PHA03098 kelch-like protein; P 55.2 2.6E+02 0.0057 29.0 18.0 16 134-150 382-397 (534)
46 KOG0293 WD40 repeat-containing 55.2 2.3E+02 0.005 28.3 16.3 27 282-308 443-471 (519)
47 PF04762 IKI3: IKI3 family; I 54.7 3.6E+02 0.0078 30.5 21.3 87 187-303 593-681 (928)
48 PF04841 Vps16_N: Vps16, N-ter 53.7 2.5E+02 0.0054 28.3 21.5 66 177-254 218-286 (410)
49 cd00200 WD40 WD40 domain, foun 52.6 1.7E+02 0.0036 26.0 27.9 106 72-202 95-206 (289)
50 PRK05560 DNA gyrase subunit A; 51.5 3.8E+02 0.0082 29.7 22.1 211 26-256 546-773 (805)
51 PHA02713 hypothetical protein; 50.9 3.2E+02 0.007 28.7 14.7 13 139-151 395-407 (557)
52 PF12341 DUF3639: Protein of u 50.0 50 0.0011 19.1 3.9 25 175-199 1-25 (27)
53 TIGR01062 parC_Gneg DNA topois 49.8 3.8E+02 0.0083 29.3 16.1 161 78-261 492-660 (735)
54 PRK05560 DNA gyrase subunit A; 49.8 4E+02 0.0087 29.5 22.3 214 78-308 546-773 (805)
55 KOG1240 Protein kinase contain 48.5 4.8E+02 0.01 30.1 14.6 118 125-254 1050-1180(1431)
56 TIGR03300 assembly_YfgL outer 47.2 2.8E+02 0.0062 27.1 25.0 55 290-356 321-376 (377)
57 KOG4441 Proteins containing BT 46.9 2E+02 0.0043 30.4 11.1 22 233-254 509-530 (571)
58 PF02239 Cytochrom_D1: Cytochr 46.4 3E+02 0.0066 27.2 15.4 155 125-312 28-196 (369)
59 PF06739 SBBP: Beta-propeller 45.5 24 0.00053 22.1 2.5 18 238-255 15-32 (38)
60 KOG0646 WD40 repeat protein [G 44.0 3.6E+02 0.0077 27.3 20.0 153 125-305 83-245 (476)
61 PF02239 Cytochrom_D1: Cytochr 43.2 3.4E+02 0.0074 26.8 16.0 155 72-260 28-196 (369)
62 KOG0278 Serine/threonine kinas 42.5 2.9E+02 0.0062 25.8 11.7 36 166-202 135-172 (334)
63 PHA02790 Kelch-like protein; P 41.8 2.7E+02 0.006 28.6 11.0 13 139-151 315-327 (480)
64 PF07250 Glyoxal_oxid_N: Glyox 40.3 3.1E+02 0.0066 25.4 11.3 71 288-360 118-190 (243)
65 KOG2106 Uncharacterized conser 39.4 4.5E+02 0.0097 27.1 26.7 93 18-147 211-303 (626)
66 KOG1539 WD repeat protein [Gen 38.5 5.7E+02 0.012 28.1 22.9 67 71-152 77-143 (910)
67 KOG4441 Proteins containing BT 37.7 5.2E+02 0.011 27.3 13.0 22 285-306 509-530 (571)
68 PF00167 FGF: Fibroblast growt 37.4 2.2E+02 0.0047 22.9 9.2 65 178-252 2-66 (122)
69 smart00442 FGF Acidic and basi 35.8 2.4E+02 0.0053 23.0 9.1 66 177-252 3-68 (126)
70 KOG0316 Conserved WD40 repeat- 33.5 3.9E+02 0.0085 24.7 14.2 58 184-252 238-296 (307)
71 PF08450 SGL: SMP-30/Gluconola 32.6 3.8E+02 0.0082 24.3 17.4 16 238-253 186-201 (246)
72 TIGR03548 mutarot_permut cycli 31.8 4.6E+02 0.01 25.0 11.7 18 343-360 216-233 (323)
73 PF07250 Glyoxal_oxid_N: Glyox 31.6 4.2E+02 0.0092 24.5 14.9 65 183-256 117-190 (243)
74 KOG0282 mRNA splicing factor [ 30.8 2.6E+02 0.0055 28.4 8.1 150 72-252 347-502 (503)
75 PF04762 IKI3: IKI3 family; I 30.7 8.3E+02 0.018 27.6 23.5 28 123-150 426-455 (928)
76 PLN03215 ascorbic acid mannose 30.2 2.3E+02 0.005 28.1 7.7 62 125-201 161-225 (373)
77 KOG1034 Transcriptional repres 30.2 1.3E+02 0.0029 29.0 5.8 53 90-150 328-382 (385)
78 PRK11138 outer membrane biogen 30.0 5.5E+02 0.012 25.3 25.9 17 341-357 376-392 (394)
79 PF13418 Kelch_4: Galactose ox 29.9 50 0.0011 21.5 2.3 17 289-305 3-19 (49)
80 PLN02153 epithiospecifier prot 29.8 5.1E+02 0.011 24.9 21.2 17 186-203 244-260 (341)
81 cd00058 FGF Acidic and basic f 29.1 3.2E+02 0.0068 22.2 8.4 63 180-252 2-64 (123)
82 PHA02790 Kelch-like protein; P 28.7 2.3E+02 0.0049 29.2 7.9 14 33-46 314-327 (480)
83 KOG0278 Serine/threonine kinas 27.7 5.1E+02 0.011 24.2 11.7 148 61-254 135-286 (334)
84 KOG0289 mRNA splicing factor [ 27.5 5.6E+02 0.012 25.9 9.6 107 237-356 349-457 (506)
85 TIGR02658 TTQ_MADH_Hv methylam 26.9 6.2E+02 0.013 24.9 25.4 277 63-360 30-319 (352)
86 smart00442 FGF Acidic and basi 25.5 3.7E+02 0.0081 21.9 8.5 66 125-200 3-68 (126)
87 PLN03215 ascorbic acid mannose 25.4 2.5E+02 0.0055 27.8 7.1 61 73-149 162-225 (373)
88 KOG1274 WD40 repeat protein [G 25.3 9.7E+02 0.021 26.6 22.1 66 27-95 14-80 (933)
89 PF01436 NHL: NHL repeat; Int 24.0 1.5E+02 0.0033 16.8 3.4 17 135-151 5-21 (28)
90 PF03785 Peptidase_C25_C: Pept 23.9 1.2E+02 0.0025 22.8 3.4 34 123-156 15-49 (81)
91 TIGR01062 parC_Gneg DNA topois 23.6 1E+03 0.022 26.2 17.4 162 184-366 493-661 (735)
92 PF10168 Nup88: Nuclear pore c 23.4 1E+03 0.022 26.1 19.9 120 30-150 34-178 (717)
93 KOG1034 Transcriptional repres 23.2 2.2E+02 0.0047 27.6 5.9 56 33-97 324-381 (385)
94 KOG2444 WD40 repeat protein [G 23.1 5E+02 0.011 23.8 7.9 64 129-202 66-131 (238)
95 KOG2055 WD40 repeat protein [G 23.1 4.3E+02 0.0092 26.9 8.0 73 289-381 356-431 (514)
96 KOG0307 Vesicle coat complex C 22.6 1E+02 0.0023 34.4 4.1 56 332-387 254-321 (1049)
97 PF06433 Me-amine-dh_H: Methyl 22.5 7.4E+02 0.016 24.3 9.5 165 180-355 32-209 (342)
98 PLN02772 guanylate kinase 22.2 3.4E+02 0.0074 27.2 7.3 63 80-151 26-95 (398)
99 PF09081 DUF1921: Domain of un 21.1 1E+02 0.0022 20.3 2.3 18 79-96 33-50 (51)
100 PF07312 DUF1459: Protein of u 21.0 62 0.0013 24.0 1.4 12 352-363 57-69 (84)
101 PF03785 Peptidase_C25_C: Pept 20.6 1.5E+02 0.0032 22.2 3.4 33 176-208 16-49 (81)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.2e-52 Score=399.31 Aligned_cols=358 Identities=31% Similarity=0.554 Sum_probs=292.3
Q ss_pred EecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCc-cCCeeecCC--CCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCC
Q 013293 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDR-LSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF 101 (446)
Q Consensus 25 ~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~-~~P~~v~~~--~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~ 101 (446)
..-..|...+..-..||+||+|...+||.+..+.. ..|++.+.. +...|++++||..|+++|++| |+||+||.|..
T Consensus 55 q~~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~D-g~lyswG~N~~ 133 (476)
T COG5184 55 QIINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDD 133 (476)
T ss_pred hhcccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCC-CCEEEeccCcc
Confidence 34456777888999999999999999999887654 889998877 667899999999999999999 99999999999
Q ss_pred CCcCCCCC----------------CCceeeeeecc----cCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCC
Q 013293 102 GRLGHGNS----------------SDLFTPLPIKA----LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (446)
Q Consensus 102 gqlG~~~~----------------~~~~~p~~v~~----l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~ 161 (446)
|+||.... ....+|..+.. ....++++++||++++++|+++|+||+||....+.++.+..
T Consensus 134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~ 213 (476)
T COG5184 134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSY 213 (476)
T ss_pred cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccc
Confidence 99998761 12345555554 23448999999999999999999999999988888887744
Q ss_pred CCccc----ceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecC-ceEEEEEec
Q 013293 162 EDSLV----PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDR-EKMVMVACG 236 (446)
Q Consensus 162 ~~~~~----p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~-~~i~~ia~G 236 (446)
..+.. +.++... ...|+++++|.+|.++|+++|++|.||+|.+||||.........+..+..+.. ..|..|+||
T Consensus 214 ~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG 292 (476)
T COG5184 214 KNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACG 292 (476)
T ss_pred cccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccC
Confidence 43322 2233222 45799999999999999999999999999999999988777666666543322 346889999
Q ss_pred CceEEEEeCCCCEEEeeCCCCCCCCCCCC----CCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCC
Q 013293 237 WRHTISVSSSGRLYSYGWSKYGQLGHGDF----KDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 312 (446)
Q Consensus 237 ~~~s~~l~~~G~vy~~G~n~~gqlG~~~~----~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqL 312 (446)
.+|+++|+++|+||+||.|.+||||.+.. .....|.....+....|..|++|..|+++|..+|.||+||.+..+||
T Consensus 293 ~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ql 372 (476)
T COG5184 293 KDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372 (476)
T ss_pred cceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccc
Confidence 99999999999999999999999999822 12345666666677779999999999999999999999999999999
Q ss_pred cCCCC--CCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeCCCCCCCCCCC-CCCCCCcEEecccCCCCC
Q 013293 313 GVGDN--VDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE-SSDRNSPKIIEPLSLDGS 386 (446)
Q Consensus 313 G~g~~--~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~-~~~~~~P~~i~~l~~~~~ 386 (446)
|..+. .....|.++ ....++.+++||..|+++.+++|+||+||.|++||||.|+ ..+...|..+.+.-.++.
T Consensus 373 g~~~~~~~~~~~~~~l--s~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~ 447 (476)
T COG5184 373 GIQEEITIDVSTPTKL--SVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGH 447 (476)
T ss_pred cCcccceeecCCcccc--ccccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCC
Confidence 99884 444444433 3346799999999999999999999999999999999997 467778888775333433
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.8e-47 Score=360.47 Aligned_cols=328 Identities=29% Similarity=0.518 Sum_probs=266.9
Q ss_pred CCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCC----------------CCccCCeeecCC----CCCcEEEEE
Q 013293 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA----------------EDRLSPTQLSAL----DGHEIVSVT 77 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~----------------~~~~~P~~v~~~----~~~~i~~i~ 77 (446)
...|++++||+.|+++|++||.||+||.|..|+||.... +....|..|+.. ...++++++
T Consensus 103 ~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~ 182 (476)
T COG5184 103 KASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLA 182 (476)
T ss_pred ceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEee
Confidence 378999999999999999999999999999999998661 124678888762 234799999
Q ss_pred ecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCce----eeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCC
Q 013293 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLF----TPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQN 153 (446)
Q Consensus 78 ~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~----~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~ 153 (446)
||++++++++++ |+||.||.+..+.++.+...+.. .+.|+... ...|+++++|..|.++|+++|+||.||+|..
T Consensus 183 cg~e~svil~~~-G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qk 260 (476)
T COG5184 183 CGWEISVILTAD-GRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQK 260 (476)
T ss_pred cCCceEEEEccC-CcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcc
Confidence 999999999999 99999999999999888554332 35555554 4689999999999999999999999999999
Q ss_pred CCcCCCCCCCcccceeecccC-CccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCC----CcccceeeeeecCc
Q 013293 154 GQLGLGTTEDSLVPQKLQAFE-GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN----DRLIPEKVATVDRE 228 (446)
Q Consensus 154 gqlg~~~~~~~~~p~~v~~~~-~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~----~~~~p~~v~~~~~~ 228 (446)
||||....+....+..+..+. -..|+.|+||.+|+++|+++|++|+||.|.+||||.++.. ....|.....+...
T Consensus 261 gqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~ 340 (476)
T COG5184 261 GQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGV 340 (476)
T ss_pred cccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCc
Confidence 999999888666555554332 2347899999999999999999999999999999998221 22334445555666
Q ss_pred eEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCC--CCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeee
Q 013293 229 KMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGD--FKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 306 (446)
Q Consensus 229 ~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~--~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~ 306 (446)
.|..|++|..|+++|..+|.||.||++..+|||..+ ......|+++..... +.+++||..|+++.+++|+||.||+
T Consensus 341 ~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~--~~~v~~gt~~~~~~t~~gsvy~wG~ 418 (476)
T COG5184 341 TICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIK--LEQVACGTHHNIARTDDGSVYSWGW 418 (476)
T ss_pred eEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccc--eEEEEecCccceeeccCCceEEecC
Confidence 799999999999999999999999999999999998 444445555554433 9999999999999999999999999
Q ss_pred CCCCCCcCCCCCCc-cccEEEec--CCCCcEEEEEecCCeEEEEEC
Q 013293 307 NKFGQVGVGDNVDH-CSPVQVKF--PLDQKVVQISCGWRHTLAVTE 349 (446)
Q Consensus 307 n~~GqLG~g~~~~~-~~p~~v~~--~~~~~i~~i~~G~~h~~al~~ 349 (446)
+.+|+||.++.... ..|+.+.- .....++..-|+...+++...
T Consensus 419 ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 419 GEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred chhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEecc
Confidence 99999999877654 45665552 345677777777776666543
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.6e-43 Score=316.20 Aligned_cols=322 Identities=29% Similarity=0.565 Sum_probs=275.9
Q ss_pred EEEEE--ecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeC
Q 013293 21 VLLIS--AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGW 98 (446)
Q Consensus 21 i~~i~--~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~ 98 (446)
|.-|+ |...|+++|+-+|++|.||+|..||||+++...+..|+.|+.+...+|++.+||++|+++|+++ |+||.||+
T Consensus 58 iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdt-G~v~afGe 136 (443)
T KOG1427|consen 58 IRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDT-GQVLAFGE 136 (443)
T ss_pred EEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecC-CcEEEecc
Confidence 44444 5577999999999999999999999999998999999999999999999999999999999999 99999999
Q ss_pred CCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCC--------------c
Q 013293 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED--------------S 164 (446)
Q Consensus 99 n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~--------------~ 164 (446)
|.+||||.++........++....+..|+.|+||..+++.|+..+.+..+|.-.+||||+++... +
T Consensus 137 NK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~ 216 (443)
T KOG1427|consen 137 NKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQ 216 (443)
T ss_pred cccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecC
Confidence 99999999997554444444444566899999999999999999999999999999999987652 3
Q ss_pred ccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeec--CceEEEEEecCceEEE
Q 013293 165 LVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD--REKMVMVACGWRHTIS 242 (446)
Q Consensus 165 ~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia~G~~~s~~ 242 (446)
..|..+..+.+..|++++||.+|+++++++++||.||.+-||.||.....+...|.++..++ +..-.++.||+..++.
T Consensus 217 pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~ 296 (443)
T KOG1427|consen 217 PRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLN 296 (443)
T ss_pred CCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeeccccee
Confidence 35666778889999999999999999999999999999999999999999999998876554 3445688999999999
Q ss_pred EeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCC--CCc
Q 013293 243 VSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN--VDH 320 (446)
Q Consensus 243 l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~--~~~ 320 (446)
+.+-|.+|.||.+... -++...|.++..+..-.+..+.++..|.+ +..|..+..||...+|.++-+.+ ...
T Consensus 297 v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qkss 369 (443)
T KOG1427|consen 297 VAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKSS 369 (443)
T ss_pred ecccceeEEeeccccC------cccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCccccccc
Confidence 9999999999987642 24566788888888878999999988865 56677899999998877654433 234
Q ss_pred cccEEEecCCCCcEEEEEecCCeEEEEECC
Q 013293 321 CSPVQVKFPLDQKVVQISCGWRHTLAVTER 350 (446)
Q Consensus 321 ~~p~~v~~~~~~~i~~i~~G~~h~~al~~~ 350 (446)
..|..+..+...+|.+|+||..|+++|.++
T Consensus 370 ~~Pk~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 370 AAPKKVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred cCccccchhcceeccceeeccceEEEEEcc
Confidence 678888888888999999999999998764
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.7e-42 Score=308.40 Aligned_cols=337 Identities=29% Similarity=0.495 Sum_probs=281.1
Q ss_pred CCeEEEEeCCCCCccCCCCC---CCccCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCC
Q 013293 37 GNIVCSWGRGEDGQLGHGDA---EDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSD 111 (446)
Q Consensus 37 ~g~v~~wG~n~~gqLG~~~~---~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~ 111 (446)
.|++..+|.-...+.|.-+. .+...|.++..+.+.+|+-|+.| ..|+++|+-+ |+.|.||.|..||||+++...
T Consensus 19 ~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~me-gk~~~wGRNekGQLGhgD~k~ 97 (443)
T KOG1427|consen 19 GGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDME-GKCYTWGRNEKGQLGHGDMKQ 97 (443)
T ss_pred CccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecc-cceeecccCccCccCccchhh
Confidence 45566666555544443322 36788999999998889998866 6799999999 999999999999999999888
Q ss_pred ceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEE
Q 013293 112 LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAV 191 (446)
Q Consensus 112 ~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~l 191 (446)
...|+.+..|...+|++.+||+.|+++||++|+||.||.|.+||||+++.........+....+..|..|+||.+|++.|
T Consensus 98 ~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l 177 (443)
T KOG1427|consen 98 RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWL 177 (443)
T ss_pred ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccceEEEe
Confidence 89999999999999999999999999999999999999999999999987654433333344455899999999999999
Q ss_pred EcCCcEEEEeCCCCCCcCCCCCCC--------------cccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCC
Q 013293 192 AEDGELYGWGWGRYGNLGLGDRND--------------RLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKY 257 (446)
Q Consensus 192 t~~G~vy~~G~n~~gqlG~~~~~~--------------~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~ 257 (446)
+..+.+.++|.-.|||||.+.... ...|..|..+....|++++||.+|+++++++++||+||-.-|
T Consensus 178 ~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGy 257 (443)
T KOG1427|consen 178 SSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGY 257 (443)
T ss_pred ecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccc
Confidence 999999999999999999987532 233556777888999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEecccCC--CcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEE
Q 013293 258 GQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVV 335 (446)
Q Consensus 258 gqlG~~~~~~~~~p~~v~~~~~--~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~ 335 (446)
|.||+....+...|..++.+.. .--.++.||+..++++.+-|.||.||.+.. +.++...|.++..+...++.
T Consensus 258 GRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~ 331 (443)
T KOG1427|consen 258 GRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLR 331 (443)
T ss_pred cccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchhhcCCccCC
Confidence 9999999999999998887653 345678999999999999999999998864 23444567777778888999
Q ss_pred EEEecCCeEEEEECCCCEEEEeCCCCCCCCCCC--CCCCCCcEEeccc
Q 013293 336 QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE--SSDRNSPKIIEPL 381 (446)
Q Consensus 336 ~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~--~~~~~~P~~i~~l 381 (446)
.+.|+..|.+ +..|....+||...+|.++-|. ......|..++-|
T Consensus 332 ~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l 378 (443)
T KOG1427|consen 332 WMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDML 378 (443)
T ss_pred CcCccceeee-ecccccccccccccccccccCccccccccCccccchh
Confidence 9999988865 5667789999998877766554 4567788877655
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=7.1e-29 Score=247.34 Aligned_cols=305 Identities=27% Similarity=0.392 Sum_probs=233.8
Q ss_pred EEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCC--CCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCC
Q 013293 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (446)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~--~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~ 109 (446)
.+++.-..||.||.|.+-.||++...+...|.+|..|. +.-+.+|+.+..|++++++. |+||++|.+..|+||+++.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~k-gqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEK-GQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCC-CcEEEeccCCCCccCcCcc
Confidence 34556688999999999999999999999999998775 34578899999999999999 9999999999999999999
Q ss_pred CCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCC-cccceeeccc--CCc-cEEEEEeCC
Q 013293 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED-SLVPQKLQAF--EGV-SIKMVAAGA 185 (446)
Q Consensus 110 ~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~-~~~p~~v~~~--~~~-~i~~ia~G~ 185 (446)
...+.|..++.|.+.+|.+|++...|+++||++|-||+||.|..+|||..+... ...|.++... .+. .|+.|++|.
T Consensus 215 q~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred cccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 999999999999999999999999999999999999999999999999887653 3456555432 222 689999999
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCc-ccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCC
Q 013293 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDR-LIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGD 264 (446)
Q Consensus 186 ~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~-~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~ 264 (446)
.|+++-| +-.||+||.|. ||||+.+.... ..|..+.. ....|..|+|....++++++++.+|++-+ |.|.-...
T Consensus 295 ~hsVawt-~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ad--y~~~k~~~ 369 (1267)
T KOG0783|consen 295 SHSVAWT-DTDVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFAD--YNQVKLPF 369 (1267)
T ss_pred ceeeeee-cceEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEec--ccceecCc
Confidence 9999999 55799999985 99998876443 44644422 23678999999999999999999999975 33322221
Q ss_pred CCCceeeEEecc--c--CCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEec
Q 013293 265 FKDHLVPCQLEA--L--RESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG 340 (446)
Q Consensus 265 ~~~~~~p~~v~~--~--~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G 340 (446)
..+...-..|.. + ....+++..+.....++||+-|+||.|-.++.- + ......|.++ ..|.+|+--
T Consensus 370 n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-~----~~c~ftp~r~-----~~isdIa~~ 439 (1267)
T KOG0783|consen 370 NVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-R----TSCKFTPLRI-----FEISDIAWT 439 (1267)
T ss_pred chhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-e----eeeeccccee-----eehhhhhhc
Confidence 111111111110 0 112355666777788999999999999976521 1 1112333333 245577777
Q ss_pred CCeEEEEECCCC
Q 013293 341 WRHTLAVTERQN 352 (446)
Q Consensus 341 ~~h~~al~~~g~ 352 (446)
.+..+++++||.
T Consensus 440 ~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 440 ANSLILCTRDGC 451 (1267)
T ss_pred cceEEEEecCcc
Confidence 788999999993
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=2.2e-25 Score=222.55 Aligned_cols=271 Identities=22% Similarity=0.362 Sum_probs=210.8
Q ss_pred EEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeeccc--CCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCC
Q 013293 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE 162 (446)
Q Consensus 85 ~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l--~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~ 162 (446)
..+++..+||.||.|....||+++......|..+..+ .+.-+.+|+.+..|+++|++.|+||++|...-|.||+++..
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 3333338999999999999999999998899888876 34457889999999999999999999999999999999888
Q ss_pred CcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC-cccceeeeee--cC-ceEEEEEecCc
Q 013293 163 DSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-RLIPEKVATV--DR-EKMVMVACGWR 238 (446)
Q Consensus 163 ~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~-~~~p~~v~~~--~~-~~i~~ia~G~~ 238 (446)
....|+.++.+.+.+|.+|+....|+++||++|.||+||.|..+|||+.+... ...|.+|... .+ ..|+.|++|..
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~ 295 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKS 295 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccc
Confidence 88999999999999999999999999999999999999999999999976533 3345444321 12 37899999999
Q ss_pred eEEEEeCCCCEEEeeCCCCCCCCCCCCCC-ceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCC
Q 013293 239 HTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 317 (446)
Q Consensus 239 ~s~~l~~~G~vy~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~ 317 (446)
|+++-+ +-.||+||.| .||||..+... ...|..+.. ....|..++|...-++++++++.+|++-+-.. .-...+
T Consensus 296 hsVawt-~~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~--~k~~~n 370 (1267)
T KOG0783|consen 296 HSVAWT-DTDVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYNQ--VKLPFN 370 (1267)
T ss_pred eeeeee-cceEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEecccc--eecCcc
Confidence 999987 5679999986 59999876544 345654532 23458899999999999999999999765432 222222
Q ss_pred CCccccEEEecC----CCCcEEEEEecCCeEEEEECCCCEEEEeCCC
Q 013293 318 VDHCSPVQVKFP----LDQKVVQISCGWRHTLAVTERQNVFSWGRGT 360 (446)
Q Consensus 318 ~~~~~p~~v~~~----~~~~i~~i~~G~~h~~al~~~g~v~~wG~n~ 360 (446)
.+..+-+.|.-- ...++.+..+....-++|++-|.||+|=.+.
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 222222333210 0124556666677788999999999997543
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.8e-23 Score=214.78 Aligned_cols=337 Identities=22% Similarity=0.325 Sum_probs=224.1
Q ss_pred EEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCC
Q 013293 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGD 100 (446)
Q Consensus 21 i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~ 100 (446)
-+.+-.++...++-+.+|+||--|... .+|+-..-.... .+... .+|++|+.|-+..+++.-. |.=|.+-..+
T Consensus 481 tv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nWm--EL~l~--~~IVq~SVG~D~~~~~~~A-~~G~I~~v~D 553 (3738)
T KOG1428|consen 481 TVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNWM--ELCLP--EPIVQISVGIDTIMFRSGA-GHGWIASVDD 553 (3738)
T ss_pred heecccchhhhhhhhcCccEEEecCcc--EEeEEccCCceE--EecCC--CceEEEEeccchhheeecc-CcceEEeccC
Confidence 345667888888888999999888654 344432222221 11111 4799999999988887765 5444443332
Q ss_pred CCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEE
Q 013293 101 FGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (446)
Q Consensus 101 ~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ 180 (446)
..+.|. -.....-...+|+.+.+...-.-.+++||++|..|..... .....+.+..+++.-|.+
T Consensus 554 ~k~~~~--------~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~iss 617 (3738)
T KOG1428|consen 554 KKRNGR--------LRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMISS 617 (3738)
T ss_pred cccccc--------hhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccceeeh
Confidence 222221 1112222345788886655545688999999999864321 001234556788889999
Q ss_pred EEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcc-cceee-------------eeecCceEEEEEecCceEEE----
Q 013293 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRL-IPEKV-------------ATVDREKMVMVACGWRHTIS---- 242 (446)
Q Consensus 181 ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~-~p~~v-------------~~~~~~~i~~ia~G~~~s~~---- 242 (446)
++.|..|.++++.+|+||+||.|..+|+|.-...... .|..- ..+.....+-..||.....-
T Consensus 618 lAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~ 697 (3738)
T KOG1428|consen 618 LALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACG 697 (3738)
T ss_pred hhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccc
Confidence 9999999999999999999999999999975542221 11110 01111222222333321111
Q ss_pred --EeCCCCEEEeeCCCCCCCCCC--------C------------C-------CCceeeEEec---ccCCCcEEEEecCCC
Q 013293 243 --VSSSGRLYSYGWSKYGQLGHG--------D------------F-------KDHLVPCQLE---ALRESFISQISGGWR 290 (446)
Q Consensus 243 --l~~~G~vy~~G~n~~gqlG~~--------~------------~-------~~~~~p~~v~---~~~~~~i~~Ia~G~~ 290 (446)
-.-.|.+..+|.++.+-+--+ . + ....-|..+. ..-+.++.+|+||..
T Consensus 698 ~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~ 777 (3738)
T KOG1428|consen 698 RVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNF 777 (3738)
T ss_pred cCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCc
Confidence 123455666666554433211 0 0 0111233333 223467999999999
Q ss_pred eeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeCCCCCCCCCCCCC
Q 013293 291 HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESS 370 (446)
Q Consensus 291 h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~ 370 (446)
|+++|.+|++||.+|+|.+||||.|+......|+++.+|.+..+++|++|.+|++++..||+||.+|.-..|||+..--+
T Consensus 778 HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e 857 (3738)
T KOG1428|consen 778 HTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGE 857 (3738)
T ss_pred eEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976432
Q ss_pred C---CCCcEEecc
Q 013293 371 D---RNSPKIIEP 380 (446)
Q Consensus 371 ~---~~~P~~i~~ 380 (446)
. -..|.++..
T Consensus 858 ~~~WNA~Pe~v~~ 870 (3738)
T KOG1428|consen 858 KAGWNAIPEKVSG 870 (3738)
T ss_pred ccccccCCCcCCC
Confidence 2 345555543
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.2e-22 Score=206.15 Aligned_cols=281 Identities=23% Similarity=0.306 Sum_probs=187.2
Q ss_pred CCCCEEEEEecCCceEEEE--eCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEE-EEcCCCEE
Q 013293 17 PFRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTA-YSESCMQV 93 (446)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~-l~~~~g~v 93 (446)
.+++|++|+.|-+...++. .+|.++.-|+.. ....-+++..-+..+|+.+. +..|.+- +.++ |++
T Consensus 523 l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k----------~~~~~Rr~~P~n~rKIv~v~-~s~~VY~~vSen-Gki 590 (3738)
T KOG1428|consen 523 LPEPIVQISVGIDTIMFRSGAGHGWIASVDDKK----------RNGRLRRLVPSNRRKIVHVC-ASGHVYGYVSEN-GKI 590 (3738)
T ss_pred CCCceEEEEeccchhheeeccCcceEEeccCcc----------cccchhhcCCCCcceeEEEe-eeeEEEEEEccC-CeE
Confidence 3589999999998888877 555555444221 11111222222334677764 4555554 5555 999
Q ss_pred EEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCc-ccceeec-
Q 013293 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS-LVPQKLQ- 171 (446)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~-~~p~~v~- 171 (446)
|..|....- .......+..|.+..|.+++.|..|.++++.+|.||.||.|+.+|+|.-..... ..|..-.
T Consensus 591 fM~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~ 662 (3738)
T KOG1428|consen 591 FMGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGR 662 (3738)
T ss_pred EeecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccc
Confidence 999854321 112345667788899999999999999999999999999999999997443211 1111100
Q ss_pred ------------ccCCccEEEEEeCCCeEE---EE---EcCCcEEEEeCCCCCCc--C------CCCC------------
Q 013293 172 ------------AFEGVSIKMVAAGAEHSV---AV---AEDGELYGWGWGRYGNL--G------LGDR------------ 213 (446)
Q Consensus 172 ------------~~~~~~i~~ia~G~~hs~---~l---t~~G~vy~~G~n~~gql--G------~~~~------------ 213 (446)
-+.+..-+...||..... +. .-.|.+-.+|.++.+-+ | ...+
T Consensus 663 ~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~ 742 (3738)
T KOG1428|consen 663 QEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQF 742 (3738)
T ss_pred eeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhhee
Confidence 011112222223321110 00 11344444544432221 1 1100
Q ss_pred CC-------cccceeeee---ecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEE
Q 013293 214 ND-------RLIPEKVAT---VDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFIS 283 (446)
Q Consensus 214 ~~-------~~~p~~v~~---~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~ 283 (446)
.. ..-|..+.. ....++.+|+||.+|++.|.+|++||+||+|.+||||.++......|+++..+.+..|+
T Consensus 743 ~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~v 822 (3738)
T KOG1428|consen 743 SSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIV 822 (3738)
T ss_pred cccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceE
Confidence 00 112323321 22368999999999999999999999999999999999999999999999999998999
Q ss_pred EEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCC
Q 013293 284 QISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 317 (446)
Q Consensus 284 ~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~ 317 (446)
+|++|.+|++++..||.||.+|.-..|||+.+--
T Consensus 823 QVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~ 856 (3738)
T KOG1428|consen 823 QVAAGSNHTILRANDGSVFTFGAFGKGQLARPAG 856 (3738)
T ss_pred EEecCCCceEEEecCCcEEEeccccCccccCccc
Confidence 9999999999999999999999999999997643
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.30 E-value=4.2e-12 Score=87.76 Aligned_cols=50 Identities=46% Similarity=0.922 Sum_probs=47.0
Q ss_pred CCcEEEeeeCCCCCCc-CCCCCCccccEEEecCCCCcEEEEEecCCeEEEE
Q 013293 298 DGKLYGWGWNKFGQVG-VGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV 347 (446)
Q Consensus 298 ~G~v~~wG~n~~GqLG-~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al 347 (446)
||+||+||.|.+|||| .++......|++++.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7888888999999999889999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.23 E-value=1.4e-11 Score=85.20 Aligned_cols=50 Identities=44% Similarity=0.696 Sum_probs=47.4
Q ss_pred CCCEEEeeCCCCCCCC-CCCCCCceeeEEecccCCCcEEEEecCCCeeEEE
Q 013293 246 SGRLYSYGWSKYGQLG-HGDFKDHLVPCQLEALRESFISQISGGWRHTMAV 295 (446)
Q Consensus 246 ~G~vy~~G~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~l 295 (446)
||+||+||.|.+|||| ..+......|++++.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7888889999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.13 E-value=8.1e-11 Score=70.92 Aligned_cols=30 Identities=50% Similarity=0.870 Sum_probs=26.1
Q ss_pred EEEEEecCCeEEEEECCCCEEEEeCCCCCC
Q 013293 334 VVQISCGWRHTLAVTERQNVFSWGRGTNGQ 363 (446)
Q Consensus 334 i~~i~~G~~h~~al~~~g~v~~wG~n~~gq 363 (446)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.11 E-value=8.2e-11 Score=70.91 Aligned_cols=30 Identities=53% Similarity=0.887 Sum_probs=26.0
Q ss_pred EEEEecCCCeeEEEeCCCcEEEeeeCCCCC
Q 013293 282 ISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 311 (446)
Q Consensus 282 i~~Ia~G~~h~~~lt~~G~v~~wG~n~~Gq 311 (446)
|++|++|.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.7e-12 Score=132.34 Aligned_cols=151 Identities=32% Similarity=0.591 Sum_probs=132.5
Q ss_pred eeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcC
Q 013293 115 PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAED 194 (446)
Q Consensus 115 p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~ 194 (446)
|..+..+.-.+|.+++||..|+++++..|++|.||.|.+||+|.+.......|..++.+.+.+..+|++|..|++++..
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~- 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS- 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-
Confidence 4444445556799999999999999999999999999999999985554445999999999999999999999999885
Q ss_pred CcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEe
Q 013293 195 GELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 274 (446)
Q Consensus 195 G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v 274 (446)
|+++++.+|.++.+|....+|+|+....+...|..+
T Consensus 84 --------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v 119 (850)
T KOG0941|consen 84 --------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLV 119 (850)
T ss_pred --------------------------------------------chhhcchhccccccCCcccccccccccccccccHHH
Confidence 899999999999999999999999877778888888
Q ss_pred cccCCCcEEEEecCCCeeEEEe-CCCcEEEeeeCCCC
Q 013293 275 EALRESFISQISGGWRHTMAVT-SDGKLYGWGWNKFG 310 (446)
Q Consensus 275 ~~~~~~~i~~Ia~G~~h~~~lt-~~G~v~~wG~n~~G 310 (446)
..+-...+++|+||-.|+++.. .-|++|..|.+..|
T Consensus 120 ~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 120 LELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred HHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 8777788999999999998765 45899999998877
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.9e-12 Score=129.08 Aligned_cols=174 Identities=27% Similarity=0.464 Sum_probs=136.5
Q ss_pred CCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEc-------CC
Q 013293 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSE-------SC 90 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~-------~~ 90 (446)
..+|++++||.+|++++...|.+++||.|.+||+|++.......|.+++.+.+.+..+|++|..|++++.. +
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e- 91 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDE- 91 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchh-
Confidence 35789999999999999999999999999999999984433333999999999999999999999887766 7
Q ss_pred CEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEec-CCcEEEEeCCCCC--CcCCCCCCCcccc
Q 013293 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTV-EGEVQSWGRNQNG--QLGLGTTEDSLVP 167 (446)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~-~G~vy~wG~n~~g--qlg~~~~~~~~~p 167 (446)
|.++.+|....+|+|+....+...|..+..+-+..+.+|+|+..|+++.-. -|++|..|.+..| ++- ....+
T Consensus 92 ~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~-----s~s~~ 166 (850)
T KOG0941|consen 92 GKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIV-----SLSGE 166 (850)
T ss_pred ccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceee-----ccchh
Confidence 999999999999999977777778888888888899999999999887654 4999999988876 111 00011
Q ss_pred eeec---ccCCccEEEEEeCCCeEEEEEcCCcE
Q 013293 168 QKLQ---AFEGVSIKMVAAGAEHSVAVAEDGEL 197 (446)
Q Consensus 168 ~~v~---~~~~~~i~~ia~G~~hs~~lt~~G~v 197 (446)
.... ......+..+.+|.+.+..|...++-
T Consensus 167 ~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~~ 199 (850)
T KOG0941|consen 167 DLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGEN 199 (850)
T ss_pred hhcccccHHHHHHHHHHhcCCCceEEEEeeccc
Confidence 0000 01122455678888888888766543
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.74 E-value=0.13 Score=58.27 Aligned_cols=291 Identities=17% Similarity=0.229 Sum_probs=145.7
Q ss_pred CEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCee--------------ecCC-CC-----CcEEEEEec
Q 013293 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQ--------------LSAL-DG-----HEIVSVTCG 79 (446)
Q Consensus 20 ~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~--------------v~~~-~~-----~~i~~i~~G 79 (446)
+..+|..-...-++.+++|++|+-=.... +..+..-...|.. |..| .+ .-++.=..|
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~---~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~G 566 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAA---QDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQG 566 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEecccccc---cCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCC
Confidence 56777777888888899999994322211 1111111111111 1111 11 112233456
Q ss_pred CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCce---eeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCc
Q 013293 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLF---TPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQL 156 (446)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~---~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gql 156 (446)
..|+++|.++ +.=|.-|||-...|=..+..-+. .|.+.. .+-.|..-.++|. +|+|+.|-....+.-
T Consensus 567 Q~Hs~aLde~-~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~--------~ldl~r~G~v~L~-~G~i~~wD~ttq~W~ 636 (1774)
T PF11725_consen 567 QRHSHALDEQ-GSQLQPGWNLSDALVLDNTRGLPKPPAPAPHE--------ILDLGRAGLVGLQ-DGKIQYWDSTTQCWK 636 (1774)
T ss_pred ceeecccccc-CCccCCCCcccceeEeeccCCCCCCCCCChHH--------hhccccccceeec-cceEeeecCcchhhh
Confidence 6777777766 66677777665444333222111 122111 1234555667887 699999976543322
Q ss_pred CCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCC-CCCcCCCCCCCcc---------cceeeeeec
Q 013293 157 GLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR-YGNLGLGDRNDRL---------IPEKVATVD 226 (446)
Q Consensus 157 g~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~-~gqlG~~~~~~~~---------~p~~v~~~~ 226 (446)
..+.. .|.++.-|.+.-.++..+|+|--.--+. +..+-.+...... .-..+..++
T Consensus 637 ~~~~k---------------d~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~ 701 (1774)
T PF11725_consen 637 DAGVK---------------DIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLE 701 (1774)
T ss_pred hccCc---------------CHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCCC
Confidence 11110 1111222333333333333333221110 1111111111111 112244555
Q ss_pred CceEEEEE-ecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCee-EEEeCCCcEEEe
Q 013293 227 REKMVMVA-CGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHT-MAVTSDGKLYGW 304 (446)
Q Consensus 227 ~~~i~~ia-~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~-~~lt~~G~v~~w 304 (446)
...|..++ .+.++.++|++.|++-..= .-| . ..|.....+. ..|+.|+.-..|. +|++.+|+||..
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g-----~----p~~l~~~gl~-G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ--KPG-----R----PVPLSRPGLS-GEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc--CCC-----C----CccCCCCCCC-cchhheeeccccceeEecCCCceeec
Confidence 55566554 4667899999999876642 111 1 1222222333 3489999887755 688999999973
Q ss_pred eeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEEECCC
Q 013293 305 GWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQ 351 (446)
Q Consensus 305 G~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g 351 (446)
=.-.+-+.-.+ ........++.+|...++..+....+|.+.+.-++
T Consensus 770 ~k~~WQ~~~~~-~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 770 PKEAWQGNAEG-DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CHHHhhCcccC-CccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 32221111111 11124566777788889999999999988876444
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.49 E-value=0.97 Score=51.58 Aligned_cols=248 Identities=19% Similarity=0.210 Sum_probs=123.7
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecc---cC-----CCC--------------EEEE
Q 013293 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA---LH-----SLR--------------VKQI 129 (446)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~---l~-----~~~--------------I~~I 129 (446)
...+|....++.++.+.+ |+||+--..... .. .....+.+... +. ..+ +++=
T Consensus 490 ~A~~VgLs~drLFvADse-GkLYsa~l~~~~---~~--~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd 563 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSE-GKLYSADLPAAQ---DN--EPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKD 563 (1774)
T ss_pred hhhheeecCCeEEEEeCC-CCEEeccccccc---CC--CcceEeccccccccccccccccceeeccccCCCCeeeEEEec
Confidence 567788877776666766 999985433221 11 11122222221 10 011 2233
Q ss_pred EcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcC
Q 013293 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLG 209 (446)
Q Consensus 130 ~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG 209 (446)
..|..|+++|.++|.=|.=|+|-...|=..+..-...+.... .-..+-.|..-.++|. +|+|+.|-....+--.
T Consensus 564 ~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~-----~~~~ldl~r~G~v~L~-~G~i~~wD~ttq~W~~ 637 (1774)
T PF11725_consen 564 RQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPA-----PHEILDLGRAGLVGLQ-DGKIQYWDSTTQCWKD 637 (1774)
T ss_pred cCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCC-----hHHhhccccccceeec-cceEeeecCcchhhhh
Confidence 456677777777776666666654443222222111110000 0111234556677887 6999999644322111
Q ss_pred ----------CCCCC--Ccccceeeeeec-CceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecc
Q 013293 210 ----------LGDRN--DRLIPEKVATVD-REKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEA 276 (446)
Q Consensus 210 ----------~~~~~--~~~~p~~v~~~~-~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~ 276 (446)
.+-.. ....--++..+. ..+--.|+-|.+|.++++.-..-+..| ..++.
T Consensus 638 ~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G------------------~~l~G 699 (1774)
T PF11725_consen 638 AGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELG------------------DALEG 699 (1774)
T ss_pred ccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCC------------------ccccC
Confidence 11111 111011111110 011122344444444444322222222 23555
Q ss_pred cCCCcEEEEe-cCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCC-CCcEEEEEecCCeE-EEEECCCCE
Q 013293 277 LRESFISQIS-GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQISCGWRHT-LAVTERQNV 353 (446)
Q Consensus 277 ~~~~~i~~Ia-~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~i~~i~~G~~h~-~al~~~g~v 353 (446)
+.+..|+.++ .+.++.++|++.|++-..= . ...|+.+..+. ...|++|++-..|. +|++.+|++
T Consensus 700 l~~~~i~a~Avv~~~~fvald~qg~lt~h~--k-----------~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~L 766 (1774)
T PF11725_consen 700 LEDRVITAFAVVNDNKFVALDDQGDLTAHQ--K-----------PGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGEL 766 (1774)
T ss_pred CCcCcceeEEEEcCCceEEeccCCcccccc--C-----------CCCCccCCCCCCCcchhheeeccccceeEecCCCce
Confidence 6666677665 4788999999999886521 1 11254443221 36799999988755 689999999
Q ss_pred EE-----EeCCCCC
Q 013293 354 FS-----WGRGTNG 362 (446)
Q Consensus 354 ~~-----wG~n~~g 362 (446)
|+ |=.+..+
T Consensus 767 f~~~k~~WQ~~~~~ 780 (1774)
T PF11725_consen 767 FRLPKEAWQGNAEG 780 (1774)
T ss_pred eecCHHHhhCcccC
Confidence 96 6544444
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.40 E-value=2.4 Score=43.13 Aligned_cols=156 Identities=18% Similarity=0.149 Sum_probs=88.2
Q ss_pred eCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccc-ceeeeeecCceEEEEEecC-ceEEEEeCCCCEEE-eeCCCCCC
Q 013293 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI-PEKVATVDREKMVMVACGW-RHTISVSSSGRLYS-YGWSKYGQ 259 (446)
Q Consensus 183 ~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~-p~~v~~~~~~~i~~ia~G~-~~s~~l~~~G~vy~-~G~n~~gq 259 (446)
.|.....+|..+|++|. +-|.......-. -+.+... .++.+|++|. .-..+++.+|+||. .|-....+
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~--t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPY--TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCCC--CccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 56667788999999985 233332222111 1111111 2588999999 67789999999764 67666666
Q ss_pred CCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEe-eeCCCCCCcCCCCCCc-cccEEEecCCCCcEEEE
Q 013293 260 LGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGW-GWNKFGQVGVGDNVDH-CSPVQVKFPLDQKVVQI 337 (446)
Q Consensus 260 lG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~w-G~n~~GqLG~g~~~~~-~~p~~v~~~~~~~i~~i 337 (446)
-|..= .+...|..... ++.|+.|....-+||.+|.+|.- |.-...-+|....... ..-..+........++|
T Consensus 261 ~GdsW-kdI~tP~~a~~-----~v~iSvGt~t~Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~tdq~isf~SV 334 (705)
T KOG3669|consen 261 EGDSW-KDIVTPRQALE-----PVCISVGTQTLWALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVVTDQCISFQSV 334 (705)
T ss_pred CCchh-hhccCcccccc-----eEEEEeccceEEEEecCCcEEEEecccccCcccccccccccccccceEEecceeeEEE
Confidence 65432 12233332221 88999999999999999999863 2221111222221111 11111222223345556
Q ss_pred EecCCeEEEEECCCCEE
Q 013293 338 SCGWRHTLAVTERQNVF 354 (446)
Q Consensus 338 ~~G~~h~~al~~~g~v~ 354 (446)
+.+ .|++|+...+.++
T Consensus 335 ~~n-dqVfaisa~~~i~ 350 (705)
T KOG3669|consen 335 IHN-DQVFAISAQAKIE 350 (705)
T ss_pred Eec-ceEEEEeccccee
Confidence 555 4777777777665
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=93.80 E-value=3.7 Score=37.98 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCeeEEEEcCCCEEEEEeC-CC-CCCcCCCCCCCceeeeeecccCCCCEEEEE--cCCceEEEEecCCcEEEEeC
Q 013293 80 ADHTTAYSESCMQVYSWGW-GD-FGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~-n~-~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~--~G~~h~~~lt~~G~vy~wG~ 150 (446)
..|+++..++ ++|.||- |+ .|.+-. -..+.|..-.- ...+|.-.. +-+.|++++- ....|.+|-
T Consensus 80 YGHtvV~y~d--~~yvWGGRND~egaCN~---Ly~fDp~t~~W-~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVEYQD--KAYVWGGRNDDEGACNL---LYEFDPETNVW-KKPEVEGFVPGARDGHSACVW-GNQMYIFGG 147 (392)
T ss_pred cCceEEEEcc--eEEEEcCccCcccccce---eeeeccccccc-cccceeeecCCccCCceeeEE-CcEEEEecC
Confidence 4577777655 9999993 33 222211 01111111000 111233322 3468888876 457899984
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.08 E-value=9.8 Score=38.99 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=49.2
Q ss_pred cEEEEEecC-CeeEEEEcCCCEEE-EEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEE
Q 013293 72 EIVSVTCGA-DHTTAYSESCMQVY-SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSW 148 (446)
Q Consensus 72 ~i~~i~~G~-~~~~~l~~~~g~v~-~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~w 148 (446)
++.+|++|. .-..+++.+ |.|| --|-..+.+.|..-. +..+|. ..+ .++.|+.|....-+||.+|.+|.=
T Consensus 228 ~L~qISagPtg~VwAvt~n-G~vf~R~GVsRqNp~GdsWk-dI~tP~--~a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTEN-GAVFYREGVSRQNPEGDSWK-DIVTPR--QAL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeC-CcEEEEecccccCCCCchhh-hccCcc--ccc---ceEEEEeccceEEEEecCCcEEEE
Confidence 588999998 667789998 7654 566555555553322 333333 222 289999999999999999999864
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=91.44 E-value=11 Score=34.54 Aligned_cols=108 Identities=16% Similarity=0.307 Sum_probs=56.3
Q ss_pred CEEEEE--cCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeC
Q 013293 125 RVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGW 202 (446)
Q Consensus 125 ~I~~I~--~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~ 202 (446)
.|..|. |-..-.+-=.+||.+-.|---. +. .++.........-+-+.-...+.+.=+.+|.|++|-.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~--------~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LS--------CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccC---cc--------cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 455554 3333344446789888887422 10 1111111111112223334455666678999999953
Q ss_pred CCCCCcCCCCCCCcccceeeeeecCceEEEEEecCc--eEEEEeCCCCEEEeeC
Q 013293 203 GRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR--HTISVSSSGRLYSYGW 254 (446)
Q Consensus 203 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--~s~~l~~~G~vy~~G~ 254 (446)
.. ..-.....|+.. ..|.+++...+ ..++.++.|+.|+|-.
T Consensus 154 ~~------~~c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 154 GE------NSCTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred cC------CccccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 22 111222333322 44566665554 4567889999999964
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.77 E-value=48 Score=35.40 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=65.6
Q ss_pred CEEEEEecCC--ceEEEEeCCeEEEEeCCCCCccCCCCCC-CccCCeeecCCCCCcEEEEEecCCeeEEE--EcCCCEEE
Q 013293 20 PVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAE-DRLSPTQLSALDGHEIVSVTCGADHTTAY--SESCMQVY 94 (446)
Q Consensus 20 ~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~-~~~~P~~v~~~~~~~i~~i~~G~~~~~~l--~~~~g~v~ 94 (446)
-|-+.+.+.. .++++...|.-.++|+..-|||..=+=. +...-.+-..++ ++..++-..+-.++. .+| |+|-
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eD-gKVK 375 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAED-GKVK 375 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCC-CcEE
Confidence 3455555533 4566777788888898888888742210 111111111112 355555444433333 355 8888
Q ss_pred EEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCC
Q 013293 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQN 153 (446)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~ 153 (446)
+|-....-+ .-+.-+.-.+...++...-....+-.+-||+|-+|--..+
T Consensus 376 vWn~~SgfC----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 376 VWNTQSGFC----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred EEeccCceE----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 885433111 1111122234455666666777777788999999986554
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=0.11 Score=56.52 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=86.1
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCC--CCCceeee-eecccCCCCEEEEEcCCceEEEEecCCcEEE
Q 013293 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGN--SSDLFTPL-PIKALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (446)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~--~~~~~~p~-~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~ 147 (446)
.+++.|.+-.+..++|..+ |++|.|-+...--|-..- ......|. ....+.+.+|+.+++..-..-++|++|+|-+
T Consensus 374 n~~I~I~A~s~el~Alhrk-GelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRK-GELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CeeEEeehhHHHHHHHhhC-CceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 5677777777777889988 999999987654333211 12222332 2345678899999999999999999999999
Q ss_pred EeCCCCCCcCCCCCCCcc-cceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCC
Q 013293 148 WGRNQNGQLGLGTTEDSL-VPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWG 203 (446)
Q Consensus 148 wG~n~~gqlg~~~~~~~~-~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n 203 (446)
|=. .+|.+-..... ..+......++.+++..|...|.++..+|..+|-||--
T Consensus 453 WlD----EcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiV 505 (3015)
T KOG0943|consen 453 WLD----ECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIV 505 (3015)
T ss_pred HHh----hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeee
Confidence 953 22222111000 01111133466788888999999999999999999953
No 23
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.98 E-value=34 Score=32.11 Aligned_cols=142 Identities=19% Similarity=0.180 Sum_probs=68.5
Q ss_pred cCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCC-CCCCcC
Q 013293 27 GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG-DFGRLG 105 (446)
Q Consensus 27 G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n-~~gqlG 105 (446)
+.-|.++...||.|| ++..-.+.+|+-+... -+-.+++.-.+..- |.+.+-.| |..|++-.. .-++++
T Consensus 62 ~ap~dvapapdG~VW-ft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~P--------hgiv~gpd-g~~Witd~~~aI~R~d 130 (353)
T COG4257 62 SAPFDVAPAPDGAVW-FTAQGTGAIGHLDPAT-GEVETYPLGSGASP--------HGIVVGPD-GSAWITDTGLAIGRLD 130 (353)
T ss_pred CCccccccCCCCceE-EecCccccceecCCCC-CceEEEecCCCCCC--------ceEEECCC-CCeeEecCcceeEEec
Confidence 445778888999999 5444445555432210 01112222222222 34444444 555555332 223333
Q ss_pred CCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCC-CCCcCCCCCCCcccceeecccCCccEEEEEeC
Q 013293 106 HGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQ-NGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG 184 (446)
Q Consensus 106 ~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~-~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G 184 (446)
..+-+...-|.+ .+.+-+.-.+.+++.+|.||.-|.+- +|.|--........|.. ..+
T Consensus 131 pkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~ 189 (353)
T COG4257 131 PKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGG 189 (353)
T ss_pred CcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCC
Confidence 222222222222 22233344578899999999988643 23221111111111111 123
Q ss_pred CCeEEEEEcCCcEEEE
Q 013293 185 AEHSVAVAEDGELYGW 200 (446)
Q Consensus 185 ~~hs~~lt~~G~vy~~ 200 (446)
.-..++.|-||+||..
T Consensus 190 gpyGi~atpdGsvwya 205 (353)
T COG4257 190 GPYGICATPDGSVWYA 205 (353)
T ss_pred CCcceEECCCCcEEEE
Confidence 4567889999999976
No 24
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.14 E-value=48 Score=33.15 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=60.8
Q ss_pred CCCEEEEEecCCceEEEE--eCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCC--CcEEEEEecCCe--eEE--EEcC
Q 013293 18 FRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGADH--TTA--YSES 89 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~--~~i~~i~~G~~~--~~~--l~~~ 89 (446)
=+.|..+..-.+-+.+++ .||.|++|=--+- -+..+...|.++..+.+ ..|+++.+|..- +.+ ...|
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D 197 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED 197 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEEEee-----cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence 356777777777777777 6888888853221 11223335666665554 568888887663 111 2223
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEe
Q 013293 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (446)
Q Consensus 90 ~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG 149 (446)
..+-+|--. .+ . .-..+.......-+.+.-+..++++=+++|.+|..-
T Consensus 198 -~t~k~wdlS------~g---~--LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 198 -RTIKLWDLS------LG---V--LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred -ceEEEEEec------cc---e--eeEEEecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 344444211 11 0 011111111222233444677788888889888654
No 25
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.84 E-value=0.089 Score=57.16 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=91.2
Q ss_pred CCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCC--CCCccCCee-ecCCCCCcEEEEEecCCeeEEEEcCCCEE
Q 013293 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGD--AEDRLSPTQ-LSALDGHEIVSVTCGADHTTAYSESCMQV 93 (446)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~--~~~~~~P~~-v~~~~~~~i~~i~~G~~~~~~l~~~~g~v 93 (446)
...++++|.+-.+..++|...|.+|.|-....--|...- ..++..|.. ...+.+.+|+.+++..-...++|++ |.|
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~n-ghl 450 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATEN-GHL 450 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecC-Cch
Confidence 456899999999999999999999999877654443321 233444432 2245667899999999999999999 999
Q ss_pred EEEeCCCCCCcCCCCCCCce-eeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCC
Q 013293 94 YSWGWGDFGRLGHGNSSDLF-TPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQ 152 (446)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~-~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~ 152 (446)
.+|=. .+|.+-..... ..+....+.+..+++..|...|.++..+|.-+|-||.-.
T Consensus 451 asWlD----EcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 451 ASWLD----ECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred hhHHh----hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 99942 22322221111 111222345667788888888988999999999999543
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=82.82 E-value=39 Score=31.15 Aligned_cols=163 Identities=18% Similarity=0.314 Sum_probs=82.4
Q ss_pred CCCCCCEEEEEecCCceEEEE--eCCeEEEEeCCCCCccCC---CCC----------------CCccCCeeecCCCC--C
Q 013293 15 AAPFRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGH---GDA----------------EDRLSPTQLSALDG--H 71 (446)
Q Consensus 15 ~~~~~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~---~~~----------------~~~~~P~~v~~~~~--~ 71 (446)
+++...+..+++|..|++-+- ..|..+--=.-.++|... ... -....|.++..+++ .
T Consensus 5 ~~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 5 PPTDDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred CCCCCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC
Confidence 344478999999999998765 344443222222233221 000 01123434433332 3
Q ss_pred cEEEEEec--CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEE--cCCceEEEEecCCcEEE
Q 013293 72 EIVSVTCG--ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQS 147 (446)
Q Consensus 72 ~i~~i~~G--~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~--~G~~h~~~lt~~G~vy~ 147 (446)
+|..|..- +.-.+-=.+| |.+-.|-.-. +. .+..+... ..|..|. -...+.+.-+++|.|+.
T Consensus 85 NVtaVgF~~dgrWMyTgseD-gt~kIWdlR~---~~--------~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSED-GTVKIWDLRS---LS--------CQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred ceEEEEEeecCeEEEecCCC-ceEEEEeccC---cc--------cchhccCC--CCcceEEecCCcceEEeecCCCcEEE
Confidence 45554432 2222333355 8888885322 11 11111111 2333333 34556677788999999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCC--eEEEEEcCCcEEEEeC
Q 013293 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (446)
Q Consensus 148 wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--hs~~lt~~G~vy~~G~ 202 (446)
|-...+ .-....+|.. +..|.+++...+ -.++.++.|+.|+|-.
T Consensus 151 WDl~~~------~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 151 WDLGEN------SCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred EEccCC------ccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 974332 1112223322 235666665554 4567789999999963
No 27
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.35 E-value=27 Score=32.79 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=58.3
Q ss_pred CEEEEEecC---CceEEEEeCCeEEEEeCC-CCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEE
Q 013293 20 PVLLISAGA---SHSVALLSGNIVCSWGRG-EDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYS 95 (446)
Q Consensus 20 ~i~~i~~G~---~~~~~l~~~g~v~~wG~n-~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~ 95 (446)
+++.+..|. -|.+++..||..|..-.. .-++++....+....|.+. +..-++..+..++.+ |.||.
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---------~~a~~nlet~vfD~~-G~lWF 163 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---------EHADANLETAVFDPW-GNLWF 163 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---------ccCCCcccceeeCCC-ccEEE
Confidence 444444443 378888899999877543 2223333222222222222 223345566777877 99999
Q ss_pred EeCC-CCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEe
Q 013293 96 WGWG-DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (446)
Q Consensus 96 wG~n-~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG 149 (446)
-|.+ .+|+|--....-..-|.|. -+.-.-++.|-||+||.--
T Consensus 164 t~q~G~yGrLdPa~~~i~vfpaPq------------G~gpyGi~atpdGsvwyas 206 (353)
T COG4257 164 TGQIGAYGRLDPARNVISVFPAPQ------------GGGPYGICATPDGSVWYAS 206 (353)
T ss_pred eeccccceecCcccCceeeeccCC------------CCCCcceEECCCCcEEEEe
Confidence 9963 3454432221111112221 1234567899999999763
No 28
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.24 E-value=61 Score=36.92 Aligned_cols=214 Identities=19% Similarity=0.215 Sum_probs=100.4
Q ss_pred EEEEcCCCEEEEEeCCCCCCcCCCCC--CCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCC-CcCCCC
Q 013293 84 TAYSESCMQVYSWGWGDFGRLGHGNS--SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG-QLGLGT 160 (446)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~gqlG~~~~--~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~g-qlg~~~ 160 (446)
+.++-| .++|.|-.+..+++-.-+. .....-..++.-.+.-+-.| .|.++|...-+|+..|-...- +.+...
T Consensus 93 aWiTiD-n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITID-NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeC-CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccc
Confidence 578888 9999999888766543222 11111111122122222222 589999999999999953321 111111
Q ss_pred CCCcccceeecccCCccEEEEEeCCCeEEEEE-cCCcEEEEeC----CCCCC-c---CCCC-CCCcccceeee--eecCc
Q 013293 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVA-EDGELYGWGW----GRYGN-L---GLGD-RNDRLIPEKVA--TVDRE 228 (446)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt-~~G~vy~~G~----n~~gq-l---G~~~-~~~~~~p~~v~--~~~~~ 228 (446)
.... ..-..++..|..|.+-.+-=++++ +||.||-.=+ +-+++ + -+.. ......|..+. ....+
T Consensus 168 f~~~----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 168 FNTS----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccc----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 1111 111123445555554333333333 4444432211 11111 0 0000 01123344222 12256
Q ss_pred eEEEEEecCceE--EEEeCCCCEEEeeCCCCCCCCCCCCCC---------ceeeEEecccCCCcEEEEe------cCCCe
Q 013293 229 KMVMVACGWRHT--ISVSSSGRLYSYGWSKYGQLGHGDFKD---------HLVPCQLEALRESFISQIS------GGWRH 291 (446)
Q Consensus 229 ~i~~ia~G~~~s--~~l~~~G~vy~~G~n~~gqlG~~~~~~---------~~~p~~v~~~~~~~i~~Ia------~G~~h 291 (446)
.|.+|+.+.... +.+++.|.|-+|=....|+-+.-.... ...-..+....-..|++|+ .-+-|
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~~l~ 323 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESNDLH 323 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCccccccee
Confidence 899998887654 467788877777555555544221000 0000011111112355554 34568
Q ss_pred eEEEeCCC-cEEEeee
Q 013293 292 TMAVTSDG-KLYGWGW 306 (446)
Q Consensus 292 ~~~lt~~G-~v~~wG~ 306 (446)
.+|+|..| ++|.-|.
T Consensus 324 LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 324 LVAITSTGVRLYFSTS 339 (1311)
T ss_pred EEEEecCCeEEEEecc
Confidence 89999888 5666553
No 29
>PHA03098 kelch-like protein; Provisional
Probab=77.55 E-value=95 Score=32.31 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=12.1
Q ss_pred ceEEEEecCCcEEEEeCCC
Q 013293 134 SHCLAVTVEGEVQSWGRNQ 152 (446)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n~ 152 (446)
.|+++. -+|+||.+|-..
T Consensus 335 ~~~~~~-~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGIY 352 (534)
T ss_pred cceEEE-ECCEEEEEeCCC
Confidence 455444 478999999543
No 30
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.69 E-value=1.2e+02 Score=34.86 Aligned_cols=204 Identities=18% Similarity=0.173 Sum_probs=98.5
Q ss_pred EEEEeCCeEEEEeCCCCCccCCCCCCC--ccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCC-cCCCC
Q 013293 32 VALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGR-LGHGN 108 (446)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~~~~~~--~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gq-lG~~~ 108 (446)
+=++-|..+|.|=.++++++-.-+..+ ...-..+..-++.-+-.| .|.++|.+. -+|+..|--..-. .+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~-~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATP-VEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEeccc-ceEEEEEEEeccccCcccc
Confidence 458899999999999877765432211 111111111122222222 477888888 8999998433211 11111
Q ss_pred CCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCC----------CCcCC--------CCCCCcccceee
Q 013293 109 SSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQN----------GQLGL--------GTTEDSLVPQKL 170 (446)
Q Consensus 109 ~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~----------gqlg~--------~~~~~~~~p~~v 170 (446)
..+. ..-..++..|..|.+ +++|+||.-|.+.. |..+. ........|..+
T Consensus 168 f~~~----~~i~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 168 FNTS----FKISVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred cccc----eeeecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 1111 001112333444432 55566655554431 11111 000123355532
Q ss_pred ccc--CCccEEEEEeCCCeEE--EEEcCCcEEEEeCCCCCCcCCCCCC-----------CcccceeeeeecCceEEEEE-
Q 013293 171 QAF--EGVSIKMVAAGAEHSV--AVAEDGELYGWGWGRYGNLGLGDRN-----------DRLIPEKVATVDREKMVMVA- 234 (446)
Q Consensus 171 ~~~--~~~~i~~ia~G~~hs~--~lt~~G~vy~~G~n~~gqlG~~~~~-----------~~~~p~~v~~~~~~~i~~ia- 234 (446)
..+ ....|++|+......+ .+++.|.|=+|-....|+-+.-.-. ....| +....-..|++|+
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~--~~~s~f~~IvsI~~ 313 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNP--LDDSVFFSIVSISP 313 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhcccc--CCCcccceeEEecc
Confidence 222 2558999998877654 5678888777755444443321100 00001 0000112344443
Q ss_pred -----ecCceEEEEeCCC-CEEEeeC
Q 013293 235 -----CGWRHTISVSSSG-RLYSYGW 254 (446)
Q Consensus 235 -----~G~~~s~~l~~~G-~vy~~G~ 254 (446)
.-+-|.+|+|..| ++|.-|.
T Consensus 314 l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 314 LSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cCcccccceeEEEEecCCeEEEEecc
Confidence 3456899999999 6887664
No 31
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=76.60 E-value=82 Score=31.14 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=13.0
Q ss_pred ceEEEEecCCcEEEEeCC
Q 013293 134 SHCLAVTVEGEVQSWGRN 151 (446)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (446)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999864
No 32
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.28 E-value=17 Score=33.08 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCceEEEEecCCcEEEEeCCC
Q 013293 123 SLRVKQIACGDSHCLAVTVEGEVQSWGRNQ 152 (446)
Q Consensus 123 ~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~ 152 (446)
+.++..+.|-..+.++||++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 447888999999999999999999997544
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=73.30 E-value=68 Score=28.65 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=70.0
Q ss_pred CCCEEEEEecCC--ceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEE
Q 013293 18 FRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQV 93 (446)
Q Consensus 18 ~~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v 93 (446)
..+|..+..-.. ..++...+|.++.|-..... ....+... ...+..+..-.. +.++...+ |.|
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~-~~i 75 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLKGH-TGPVRDVAASADGTYLASGSSD-KTI 75 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEecC-CcceeEEEECCCCCEEEEEcCC-CeE
Confidence 356667666553 33333458999999654321 11111111 123334443332 34444446 999
Q ss_pred EEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCc-eEEEEec-CCcEEEEeCCCCCCcCCCCCCCcccceeec
Q 013293 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS-HCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (446)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~-h~~~lt~-~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~ 171 (446)
+.|-..... ....+. .....|..+..... ..++... +|.|+.|-....... ..+.
T Consensus 76 ~i~~~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~ 132 (289)
T cd00200 76 RLWDLETGE-----------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-----------TTLR 132 (289)
T ss_pred EEEEcCccc-----------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-----------EEec
Confidence 999654321 111111 11224666655443 3444444 899999975421110 1111
Q ss_pred ccCCccEEEEEeCC-CeEEEEEc-CCcEEEEeC
Q 013293 172 AFEGVSIKMVAAGA-EHSVAVAE-DGELYGWGW 202 (446)
Q Consensus 172 ~~~~~~i~~ia~G~-~hs~~lt~-~G~vy~~G~ 202 (446)
.....|..+.... ...++... +|.|+.|-.
T Consensus 133 -~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 133 -GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred -cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 1112355555444 23333333 888888854
No 34
>PLN02153 epithiospecifier protein
Probab=73.09 E-value=94 Score=30.16 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=12.3
Q ss_pred ceEEEEecCCcEEEEeCC
Q 013293 134 SHCLAVTVEGEVQSWGRN 151 (446)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (446)
.|++++ .++++|.+|--
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566655 46899999854
No 35
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.80 E-value=20 Score=32.66 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=43.8
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCC-CCceeeeee-cccCCCCEEEEEcC-CceEEEEecCCcEEE
Q 013293 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS-SDLFTPLPI-KALHSLRVKQIACG-DSHCLAVTVEGEVQS 147 (446)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~-~~~~~p~~v-~~l~~~~I~~I~~G-~~h~~~lt~~G~vy~ 147 (446)
.++..+.|...+.++||.+ |.+|+|=-.....+-...+ .+...+.+. .......|+.+... ...-++...+|+.|+
T Consensus 13 s~~~~l~~~~~~Ll~iT~~-G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSS-GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCC-CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence 3577799999999999999 9999996443222111100 000000000 00123456555443 344455566788888
Q ss_pred EeC
Q 013293 148 WGR 150 (446)
Q Consensus 148 wG~ 150 (446)
|-.
T Consensus 92 y~~ 94 (219)
T PF07569_consen 92 YSP 94 (219)
T ss_pred ecc
Confidence 854
No 36
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=71.93 E-value=1.1e+02 Score=30.65 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=41.9
Q ss_pred CCEEEEEc-CCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeec--ccCCccEEEEEeCCCeEEEEEcCCcEEEE
Q 013293 124 LRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ--AFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (446)
Q Consensus 124 ~~I~~I~~-G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~--~~~~~~i~~ia~G~~hs~~lt~~G~vy~~ 200 (446)
.+|+.+.- -..+.++|.++|.++.+- -.|.. ....+..+. .....++-.+..+..-.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 57777765 356889999999988873 22322 111122221 11122344445565668889999999987
Q ss_pred e
Q 013293 201 G 201 (446)
Q Consensus 201 G 201 (446)
=
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 3
No 37
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=68.22 E-value=12 Score=22.78 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.9
Q ss_pred CCEEEEEcCC-ceEEEEecCCcEEEE
Q 013293 124 LRVKQIACGD-SHCLAVTVEGEVQSW 148 (446)
Q Consensus 124 ~~I~~I~~G~-~h~~~lt~~G~vy~w 148 (446)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3689999999 899999999999963
No 38
>PHA02713 hypothetical protein; Provisional
Probab=65.64 E-value=1.2e+02 Score=31.94 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=11.8
Q ss_pred eEEEEecCCcEEEEeCC
Q 013293 135 HCLAVTVEGEVQSWGRN 151 (446)
Q Consensus 135 h~~~lt~~G~vy~wG~n 151 (446)
+..+..-+|+||++|-.
T Consensus 344 ~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred ceeEEEECCEEEEECCc
Confidence 33444558999999964
No 39
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=65.53 E-value=1.4e+02 Score=29.24 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=28.8
Q ss_pred ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEE-EecCCCeeEEEeCCCcEEEe
Q 013293 238 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ-ISGGWRHTMAVTSDGKLYGW 304 (446)
Q Consensus 238 ~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~-Ia~G~~h~~~lt~~G~v~~w 304 (446)
.+.++.+.+|.||++-... |++- -..+......... +.. ..+.++.+.+|+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~----------~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFV----------ARLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEE----------EEEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence 4666778889999885322 2210 0111001000111 222 3467888899999986
No 40
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=63.68 E-value=2.4e+02 Score=31.23 Aligned_cols=211 Identities=10% Similarity=0.047 Sum_probs=101.7
Q ss_pred ecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCe--eecCCCCCcEEEEEec-----CCeeEEEEcCCCEEEEEeC
Q 013293 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYSWGW 98 (446)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~--~v~~~~~~~i~~i~~G-----~~~~~~l~~~~g~v~~wG~ 98 (446)
....+-++++++|++|..=... +-.......-.|. .+...++.+|+.+.+- ....++++.+ |.+.-.-.
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~---IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~-GyiKRi~l 619 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQ---IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKN-GVVKKTSL 619 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhh---CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCC-CEEEEEEh
Confidence 3445567888999999872211 1111111111111 2333455667776552 2346677777 87666543
Q ss_pred CCCCCcCCCCCCCceeeeeecccCCCCEEEE--EcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCc
Q 013293 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (446)
Q Consensus 99 n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I--~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~ 176 (446)
+.+-.... ..-..+..-.+..++.+ +....+.+++|++|++|.+-.+.-...+....... .+..-++.
T Consensus 620 ~~~~~~~r------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L~~~E 689 (800)
T TIGR01063 620 TEFSNIRS------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKLKNED 689 (800)
T ss_pred HHhhhhcc------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccCCCCC
Confidence 33321100 00000111123345544 33446799999999999997665444443221111 12222455
Q ss_pred cEEEEEe--CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeec--CceEEEEE--ecCceEEEEeCCCCEE
Q 013293 177 SIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD--REKMVMVA--CGWRHTISVSSSGRLY 250 (446)
Q Consensus 177 ~i~~ia~--G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia--~G~~~s~~l~~~G~vy 250 (446)
+|+.+.. ...+.+++|++|.+.-.-...+-....+.. -.....+. +..++.+. -.....++++++|++.
T Consensus 690 ~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~k-----Gv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~l 764 (800)
T TIGR01063 690 FVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGK-----GVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLI 764 (800)
T ss_pred EEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCc-----ceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEE
Confidence 6776654 234678888888776554322211111000 01111111 12333322 2334577888888887
Q ss_pred EeeCC
Q 013293 251 SYGWS 255 (446)
Q Consensus 251 ~~G~n 255 (446)
.+-.+
T Consensus 765 rf~~~ 769 (800)
T TIGR01063 765 RTSVQ 769 (800)
T ss_pred EeeHh
Confidence 76543
No 41
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=63.41 E-value=2.4e+02 Score=31.20 Aligned_cols=213 Identities=12% Similarity=0.050 Sum_probs=101.0
Q ss_pred cCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC-----CceEEEEecCCcEEEEeCCCC
Q 013293 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGRNQN 153 (446)
Q Consensus 79 G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G-----~~h~~~lt~~G~vy~wG~n~~ 153 (446)
..++.+++|+. |++|..-...--..+.... .......+....+++|+.+.+- ....+++|++|.+--.-.+.+
T Consensus 545 t~d~LllfTs~-Grv~~l~~~~IP~~~r~~~-G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~ 622 (800)
T TIGR01063 545 THDYLLFFTNR-GKVYWLKVYQIPEASRTAK-GKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEF 622 (800)
T ss_pred CCCeEEEEeCC-CcEEEEEhhhCcCCCcCCC-CcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHh
Confidence 44556777777 9999984322211111100 0000011233356678776652 235788999998877654432
Q ss_pred CCcCCCCCCCcccceeeccc-CCccEEEEE--eCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceE
Q 013293 154 GQLGLGTTEDSLVPQKLQAF-EGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKM 230 (446)
Q Consensus 154 gqlg~~~~~~~~~p~~v~~~-~~~~i~~ia--~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i 230 (446)
-.... .-.....+ ++..++.+. ....+.+++|++|++|.+-...--..+....... .+..-.+++|
T Consensus 623 ~~~~r-------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L~~~E~V 691 (800)
T TIGR01063 623 SNIRS-------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKLKNEDFV 691 (800)
T ss_pred hhhcc-------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccCCCCCEE
Confidence 11100 00000011 122344432 3445689999999999886554333332221111 1222244566
Q ss_pred EEEEec--CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEE--EecCCCeeEEEeCCCcEEEeee
Q 013293 231 VMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKLYGWGW 306 (446)
Q Consensus 231 ~~ia~G--~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--Ia~G~~h~~~lt~~G~v~~wG~ 306 (446)
+.+.+- ..+.+++|++|.+.-.-..++-....+... ..-..+..- +..+.. +.-.....+++|++|.+..+-.
T Consensus 692 v~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kG--v~~ikl~~~-~d~lv~~~~v~~~~~v~liT~~G~~lrf~~ 768 (800)
T TIGR01063 692 VSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKG--VKSIKITDR-NGQVVGAIAVDDDDELMLITSAGKLIRTSV 768 (800)
T ss_pred EEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcc--eEEEEccCC-CCeEEEEEEecCCCeEEEEecCCeEEEeeH
Confidence 665542 335778888887776643333221111000 000011110 111222 2223445777888888776654
Q ss_pred C
Q 013293 307 N 307 (446)
Q Consensus 307 n 307 (446)
+
T Consensus 769 ~ 769 (800)
T TIGR01063 769 Q 769 (800)
T ss_pred h
Confidence 4
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=61.94 E-value=2.3e+02 Score=30.53 Aligned_cols=236 Identities=16% Similarity=0.179 Sum_probs=109.4
Q ss_pred EEEEcCCCEEEEEeCCCCCCcCCCCC-CCceeeeeecccCCCCEEEEEcCCc--eEEEEecCCcEEEEeCCCCCCcCCCC
Q 013293 84 TAYSESCMQVYSWGWGDFGRLGHGNS-SDLFTPLPIKALHSLRVKQIACGDS--HCLAVTVEGEVQSWGRNQNGQLGLGT 160 (446)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~gqlG~~~~-~~~~~p~~v~~l~~~~I~~I~~G~~--h~~~lt~~G~vy~wG~n~~gqlg~~~ 160 (446)
+++... |+-.++|...-|||..=+- ++.+.-..-.. -.+|..++-..+ ..+.=.+||+|-.|-..+. .|-.
T Consensus 313 ~~~N~t-GDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~v-- 386 (893)
T KOG0291|consen 313 VSFNST-GDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFV-- 386 (893)
T ss_pred EEeccc-CCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEE--
Confidence 334444 7777777766666654322 11111111111 124555555544 3333346788888864331 1100
Q ss_pred CCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceE
Q 013293 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHT 240 (446)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s 240 (446)
+.-+.-.+...++...-.+..+...-||+|-+|-..+|-.. .....|.++.. .+
T Consensus 387 -------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf-----RTft~P~p~Qf--------------sc 440 (893)
T KOG0291|consen 387 -------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF-----RTFTSPEPIQF--------------SC 440 (893)
T ss_pred -------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee-----eeecCCCceee--------------eE
Confidence 00111123456677777777788888999999976654322 12223333321 13
Q ss_pred EEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCC--CcEEEEecCCCeeEEE--eCCCcEEEeeeCCCCCCcCCC
Q 013293 241 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAV--TSDGKLYGWGWNKFGQVGVGD 316 (446)
Q Consensus 241 ~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~Ia~G~~h~~~l--t~~G~v~~wG~n~~GqLG~g~ 316 (446)
++++..|.|.+.|.-+.-.+-.- ...+-..+..+.+ .+|..++....-+.+. .=|..|-.|--- .+-|
T Consensus 441 vavD~sGelV~AG~~d~F~IfvW---S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if--~s~~--- 512 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVW---SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF--SSSG--- 512 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEE---EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee--ccCc---
Confidence 55566666666654211000000 0000011111111 1233222221111111 123344444321 1111
Q ss_pred CCCccccEEEecCCCCcEEEEEe--cCCeEEEEECCCCEEEEeCCCCCCCCC
Q 013293 317 NVDHCSPVQVKFPLDQKVVQISC--GWRHTLAVTERQNVFSWGRGTNGQLGH 366 (446)
Q Consensus 317 ~~~~~~p~~v~~~~~~~i~~i~~--G~~h~~al~~~g~v~~wG~n~~gqLG~ 366 (446)
...|.++ . ..+..++- -..-.++.|-||++-.|-.++..|+|.
T Consensus 513 ---~vEtl~i--~--sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 513 ---TVETLEI--R--SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred ---eeeeEee--c--cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 1223332 2 23444443 366788889999999999999999964
No 43
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=60.85 E-value=21 Score=21.64 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.3
Q ss_pred cEEEEEeCC-CeEEEEEcCCcEEEE
Q 013293 177 SIKMVAAGA-EHSVAVAEDGELYGW 200 (446)
Q Consensus 177 ~i~~ia~G~-~hs~~lt~~G~vy~~ 200 (446)
.+++|++|. ....+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 888999999999953
No 44
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=58.17 E-value=1.8e+02 Score=27.93 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=12.5
Q ss_pred ceEEEEecCCcEEEEeCCC
Q 013293 134 SHCLAVTVEGEVQSWGRNQ 152 (446)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n~ 152 (446)
.|++++ -+++||.+|-..
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 455554 478999999643
No 45
>PHA03098 kelch-like protein; Provisional
Probab=55.20 E-value=2.6e+02 Score=28.99 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=11.4
Q ss_pred ceEEEEecCCcEEEEeC
Q 013293 134 SHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 134 ~h~~~lt~~G~vy~wG~ 150 (446)
.|+++ .-+|++|.+|-
T Consensus 382 ~~~~~-~~~~~iYv~GG 397 (534)
T PHA03098 382 NPCVV-NVNNLIYVIGG 397 (534)
T ss_pred cceEE-EECCEEEEECC
Confidence 45544 45789999985
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=55.18 E-value=2.3e+02 Score=28.30 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEecCCCeeEEE--eCCCcEEEeeeCC
Q 013293 282 ISQISGGWRHTMAV--TSDGKLYGWGWNK 308 (446)
Q Consensus 282 i~~Ia~G~~h~~~l--t~~G~v~~wG~n~ 308 (446)
|.+-.+|.+-.++. .+|++||.|-.-.
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccC
Confidence 55555666656666 4899999997543
No 47
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=54.73 E-value=3.6e+02 Score=30.46 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=50.5
Q ss_pred eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCC-CCCCCCCCCC
Q 013293 187 HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWS-KYGQLGHGDF 265 (446)
Q Consensus 187 hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n-~~gqlG~~~~ 265 (446)
+.+.|++.|++|+=+ ..+ ...++++.....|-++.|.+-.+.+.=.+ ....+-
T Consensus 593 ~~~GLs~~~~Ly~n~------------------~~l----a~~~tSF~v~~~~Ll~TT~~h~l~fv~L~~~~~~l~---- 646 (928)
T PF04762_consen 593 VLFGLSSNGRLYANS------------------RLL----ASNCTSFAVTDSFLLFTTTQHTLKFVHLNSSVEDLE---- 646 (928)
T ss_pred EEEEECCCCEEEECC------------------EEE----ecCCceEEEEcCEEEEEecCceEEEEECcCchhhcc----
Confidence 688899999999511 111 14677888888888888888777777544 111110
Q ss_pred CCceeeEEecc-cCCCcEEEEecCCCeeEEEeCCCcEEE
Q 013293 266 KDHLVPCQLEA-LRESFISQISGGWRHTMAVTSDGKLYG 303 (446)
Q Consensus 266 ~~~~~p~~v~~-~~~~~i~~Ia~G~~h~~~lt~~G~v~~ 303 (446)
.+..... ..+..+..|--|..-..++-.+-+|..
T Consensus 647 ----~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVL 681 (928)
T PF04762_consen 647 ----IPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVL 681 (928)
T ss_pred ----cccCccccccccccccCccCCEEEEEeCCCceEEE
Confidence 0000000 023346667777766666666656554
No 48
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=53.75 E-value=2.5e+02 Score=28.26 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=35.9
Q ss_pred cEEEEEeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeee-ecCceEEEEEecCceEEEEeCCCCEEEee
Q 013293 177 SIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT-VDREKMVMVACGWRHTISVSSSGRLYSYG 253 (446)
Q Consensus 177 ~i~~ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~ia~G~~~s~~l~~~G~vy~~G 253 (446)
++.+|+.. ..|.++++++|++|+.-. ++.+. -.+... ....+.....||.+ +++|.-...|...|
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ss-Df~~~----------~~e~~~~~~~~p~~~~WCG~d-av~l~~~~~l~lvg 285 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSS-DFSEK----------LCEFDTDSKSPPKQMAWCGND-AVVLSWEDELLLVG 285 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEEC-cccce----------eEEeecCcCCCCcEEEEECCC-cEEEEeCCEEEEEC
Confidence 57776655 467888899999997643 22111 000100 11122334577775 44444466777777
Q ss_pred C
Q 013293 254 W 254 (446)
Q Consensus 254 ~ 254 (446)
.
T Consensus 286 ~ 286 (410)
T PF04841_consen 286 P 286 (410)
T ss_pred C
Confidence 3
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=52.57 E-value=1.7e+02 Score=25.98 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=50.8
Q ss_pred cEEEEEecCC-eeEEEEc-CCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC-ceEEEEec-CCcEEE
Q 013293 72 EIVSVTCGAD-HTTAYSE-SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTV-EGEVQS 147 (446)
Q Consensus 72 ~i~~i~~G~~-~~~~l~~-~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~-~h~~~lt~-~G~vy~ 147 (446)
.|..+..... ..++... + |.|+.|-...... ...+. .....|..+.... ...++... +|.|+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKC-----------LTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cEEEEEEcCCCCEEEEecCC-CeEEEEECCCcEE-----------EEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 4666655443 3333344 5 8999996542110 11111 1123466665554 33344444 899999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCC--eEEEEEcCCcEEEEeC
Q 013293 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (446)
Q Consensus 148 wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--hs~~lt~~G~vy~~G~ 202 (446)
|-......+ ..+. .....|..+....+ ..++...+|.++.|-.
T Consensus 162 ~d~~~~~~~-----------~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 162 WDLRTGKCV-----------ATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred EEccccccc-----------eeEe-cCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 865421100 0111 11123444444333 4555556888888854
No 50
>PRK05560 DNA gyrase subunit A; Validated
Probab=51.49 E-value=3.8e+02 Score=29.74 Aligned_cols=211 Identities=14% Similarity=0.078 Sum_probs=102.9
Q ss_pred ecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCe--eecCCCCCcEEEEEecC-----CeeEEEEcCCCEEEEEeC
Q 013293 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSWGW 98 (446)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~--~v~~~~~~~i~~i~~G~-----~~~~~l~~~~g~v~~wG~ 98 (446)
....+-+++++.|++|..=...--..+ ....-.|. .+...++.+|+.+.+-. ...++++++ |.+.---.
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~iP~~~---~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~-GyiKRi~l 621 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYEIPEAS---RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKN-GTVKKTSL 621 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhhCcCCC---cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCC-CEEEEEEh
Confidence 344556788899999987544211111 11111111 23334556777766543 346777777 86665543
Q ss_pred CCCCCcCCCCCCCceeeeeecccCCCCEEEEE--cCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecc-cCC
Q 013293 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA-FEG 175 (446)
Q Consensus 99 n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~--~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~ 175 (446)
.++-....+ ....+..-.+..++.+. ....+.+++|++|++|.+-...-...+.... ...+.. -++
T Consensus 622 ~~~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~~ 690 (805)
T PRK05560 622 SEFSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLREG 690 (805)
T ss_pred HHhhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccCCCC
Confidence 332211000 01111111344555443 3456799999999999997655433332211 111112 234
Q ss_pred ccEEEEEeCC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee-c-CceEEEE--EecCceEEEEeCCCC
Q 013293 176 VSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV-D-REKMVMV--ACGWRHTISVSSSGR 248 (446)
Q Consensus 176 ~~i~~ia~G~---~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~-~-~~~i~~i--a~G~~~s~~l~~~G~ 248 (446)
.+|+.+..-. .+.+++|+.|.+.-.-.+.+-....+. .......+ . +..++.+ ..+....++++.+|+
T Consensus 691 E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~-----kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~ 765 (805)
T PRK05560 691 DEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG-----KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGK 765 (805)
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC-----CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCe
Confidence 5676665432 267888888876654322211111000 00011111 1 1233332 234455778888888
Q ss_pred EEEeeCCC
Q 013293 249 LYSYGWSK 256 (446)
Q Consensus 249 vy~~G~n~ 256 (446)
+..+-.++
T Consensus 766 ~lrf~~~e 773 (805)
T PRK05560 766 LIRTRVSE 773 (805)
T ss_pred EEEEEHHH
Confidence 87775443
No 51
>PHA02713 hypothetical protein; Provisional
Probab=50.88 E-value=3.2e+02 Score=28.74 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=9.8
Q ss_pred EecCCcEEEEeCC
Q 013293 139 VTVEGEVQSWGRN 151 (446)
Q Consensus 139 lt~~G~vy~wG~n 151 (446)
..-+|+||+.|-.
T Consensus 395 ~~~~g~IYviGG~ 407 (557)
T PHA02713 395 CVLDQYIYIIGGR 407 (557)
T ss_pred EEECCEEEEEeCC
Confidence 3448999999853
No 52
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=49.96 E-value=50 Score=19.13 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=20.6
Q ss_pred CccEEEEEeCCCeEEEEEcCCcEEE
Q 013293 175 GVSIKMVAAGAEHSVAVAEDGELYG 199 (446)
Q Consensus 175 ~~~i~~ia~G~~hs~~lt~~G~vy~ 199 (446)
++.|..|++|....++.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3579999999999999998886543
No 53
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=49.84 E-value=3.8e+02 Score=29.30 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=84.1
Q ss_pred ecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEE--cCCceEEEEecCCcEEEEeCCCCCC
Q 013293 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQ 155 (446)
Q Consensus 78 ~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~--~G~~h~~~lt~~G~vy~wG~n~~gq 155 (446)
.-...+++++++ |-|-.--...+. +.-+..-.+..++.+. ....+.+++|++|++|.+..+.--
T Consensus 492 ~~e~v~VilTk~-G~IKr~~~~~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP- 557 (735)
T TIGR01062 492 PKEPVTIILSKM-GWVRSAKGHDID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP- 557 (735)
T ss_pred cCcceEEEEecC-CEEEeccccccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-
Confidence 345667888888 866544322221 1122222344555543 345668999999999999766542
Q ss_pred cCCCCCCCcccceeecccCCccEEEEEeCCC--eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee-cCceEEE
Q 013293 156 LGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV-DREKMVM 232 (446)
Q Consensus 156 lg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~-~~~~i~~ 232 (446)
.|.+... ..-..+..-++.+|+.+.+... +.+++|+.|..+-.-.+.+-....+.. .+..+ .+..++.
T Consensus 558 ~GR~aGg--pV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGK-------gvi~Lk~~d~lv~ 628 (735)
T TIGR01062 558 SARGQGE--PLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGK-------ALINLPENASVIA 628 (735)
T ss_pred cCccCCc--eeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCe-------EEEEeCCCCEEEE
Confidence 1221111 1111122235667887776543 578889999777654333211111000 00011 1222222
Q ss_pred --EEecC-ceEEEEeCCCCEEEeeCCCCCCCC
Q 013293 233 --VACGW-RHTISVSSSGRLYSYGWSKYGQLG 261 (446)
Q Consensus 233 --ia~G~-~~s~~l~~~G~vy~~G~n~~gqlG 261 (446)
...+. .+.++++++|++..+-.++--+++
T Consensus 629 v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~g 660 (735)
T TIGR01062 629 PLPVNGDSDMIAAITEAGRMLVFPIDDLPELS 660 (735)
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEEHHHCCccC
Confidence 12233 357789999999988765544443
No 54
>PRK05560 DNA gyrase subunit A; Validated
Probab=49.76 E-value=4e+02 Score=29.54 Aligned_cols=214 Identities=12% Similarity=0.075 Sum_probs=102.9
Q ss_pred ecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC-----ceEEEEecCCcEEEEeCCC
Q 013293 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQ 152 (446)
Q Consensus 78 ~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~-----~h~~~lt~~G~vy~wG~n~ 152 (446)
...++.+++++. |++|..-...--..+.... .......+....+++|+.+.+-. ...+++|++|.+.-.-.+.
T Consensus 546 ~t~d~LllfTs~-Grv~~l~v~~iP~~~~~~~-G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~ 623 (805)
T PRK05560 546 STHDTLLFFTNR-GRVYRLKVYEIPEASRTAR-GRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSE 623 (805)
T ss_pred cCCCeEEEEecC-CeEEEEEhhhCcCCCcCCC-CeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHH
Confidence 344556777777 9999986553222111000 00000112334567788776643 4578899999877665433
Q ss_pred CCCcCCCCCCCcccceeeccc-CCccEEEEE--eCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeee-eecCc
Q 013293 153 NGQLGLGTTEDSLVPQKLQAF-EGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA-TVDRE 228 (446)
Q Consensus 153 ~gqlg~~~~~~~~~p~~v~~~-~~~~i~~ia--~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~-~~~~~ 228 (446)
+-....+ ......+ ++..++.+. ....+.+++|++|++|.+-...--..+.... ...+. .-.++
T Consensus 624 ~~~~~r~-------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~~E 691 (805)
T PRK05560 624 FSNIRSN-------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLREGD 691 (805)
T ss_pred hhhcccC-------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccCCCCC
Confidence 2111000 0011111 233444443 3345689999999999886544322222111 11111 12345
Q ss_pred eEEEEEecC---ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEE--EecCCCeeEEEeCCCcEEE
Q 013293 229 KMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKLYG 303 (446)
Q Consensus 229 ~i~~ia~G~---~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--Ia~G~~h~~~lt~~G~v~~ 303 (446)
+|+.+.+-. .+.++++++|.+.-.-.+++-....+... ..-.++..- +..+.. +..+....+++|.+|++.-
T Consensus 692 ~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG--~~~lkl~~~-~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 692 EVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG--VITIKITEK-NGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred EEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc--EEeeeccCC-CCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 666655432 25778888887666543332211111000 000011110 112222 2234456778888888877
Q ss_pred eeeCC
Q 013293 304 WGWNK 308 (446)
Q Consensus 304 wG~n~ 308 (446)
+-.+.
T Consensus 769 f~~~e 773 (805)
T PRK05560 769 TRVSE 773 (805)
T ss_pred EEHHH
Confidence 66543
No 55
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=48.55 E-value=4.8e+02 Score=30.09 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=60.7
Q ss_pred CEEEEEcCCce-EEEEe--cCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEE-eCCCeEEEE-EcCCcEEE
Q 013293 125 RVKQIACGDSH-CLAVT--VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA-AGAEHSVAV-AEDGELYG 199 (446)
Q Consensus 125 ~I~~I~~G~~h-~~~lt--~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia-~G~~hs~~l-t~~G~vy~ 199 (446)
.+.+++....| +++++ +||.|-.|-.-.. .|.+.... -...-...+.++.++. |++.+.+|+ ++||.|-.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s~r---S~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGSAR---SELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCcceee---eeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 56688888888 66664 6899999975332 22211111 1111122344565553 555555444 78899888
Q ss_pred EeCCCCCCcCCCCCCCccccee--eeeec-CceEEEEEec-----CceEEEEeCCCCEEEeeC
Q 013293 200 WGWGRYGNLGLGDRNDRLIPEK--VATVD-REKMVMVACG-----WRHTISVSSSGRLYSYGW 254 (446)
Q Consensus 200 ~G~n~~gqlG~~~~~~~~~p~~--v~~~~-~~~i~~ia~G-----~~~s~~l~~~G~vy~~G~ 254 (446)
..-+.+. .....+.. ++... ...++++.+- ..-.++.|..+++..|+-
T Consensus 1125 ~~id~~~-------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1125 LRIDHYN-------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEccccc-------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 8765431 11111111 11111 1223433221 123456788888999874
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=47.23 E-value=2.8e+02 Score=27.06 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=30.4
Q ss_pred CeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEE-EEecCCeEEEEECCCCEEEE
Q 013293 290 RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQ-ISCGWRHTLAVTERQNVFSW 356 (446)
Q Consensus 290 ~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~-i~~G~~h~~al~~~g~v~~w 356 (446)
.+.++.+.+|.||++-... |++= -..+.....-... +..+ ++.++.+.||+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~----------~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFV----------ARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEE----------EEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 4677778899999985332 2220 0111111101111 2333 568888899999986
No 57
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=46.94 E-value=2e+02 Score=30.41 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=15.6
Q ss_pred EEecCceEEEEeCCCCEEEeeC
Q 013293 233 VACGWRHTISVSSSGRLYSYGW 254 (446)
Q Consensus 233 ia~G~~~s~~l~~~G~vy~~G~ 254 (446)
+.....+.-+..-++++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4445566666667899999985
No 58
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=46.40 E-value=3e+02 Score=27.16 Aligned_cols=155 Identities=16% Similarity=0.273 Sum_probs=70.6
Q ss_pred CEEEEEcCCc-eE-EEEecCCc-EEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCC-eEEEEEcCCcEEEE
Q 013293 125 RVKQIACGDS-HC-LAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE-HSVAVAEDGELYGW 200 (446)
Q Consensus 125 ~I~~I~~G~~-h~-~~lt~~G~-vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~vy~~ 200 (446)
.+..|..|.. |. ++.+.||+ +|..++ .|.+ ..+.......+..|..|.. +.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV-----------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE-----------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE-----------EEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 4566766543 54 55677786 777653 2222 2233333446777777664 67888999986554
Q ss_pred eCCCCCCcCCCCCCCcccceeeee--e----cCceEEEEEecCc---eEEEEeCCCCEEEeeCCCCCCCCCCCCCCceee
Q 013293 201 GWGRYGNLGLGDRNDRLIPEKVAT--V----DREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVP 271 (446)
Q Consensus 201 G~n~~gqlG~~~~~~~~~p~~v~~--~----~~~~i~~ia~G~~---~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p 271 (446)
++...+++-.-+......-..++. . ...++..|.+... +.+.+.+.+++|..-.... .+
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~------------~~ 162 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP------------KN 162 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS------------SC
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc------------cc
Confidence 543334443322222111111211 0 1235555654332 5566777888887632111 01
Q ss_pred EEecccCCCcEEEEecC-CCeeEEEeCCCcEEEeeeCCCCCC
Q 013293 272 CQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQV 312 (446)
Q Consensus 272 ~~v~~~~~~~i~~Ia~G-~~h~~~lt~~G~v~~wG~n~~GqL 312 (446)
..++.+..| .-|=.+++.+|+.|.-+.|....+
T Consensus 163 --------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 163 --------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp --------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred --------cceeeecccccccccccCcccceeeeccccccee
Confidence 113333333 235567777777666555544333
No 59
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=45.54 E-value=24 Score=22.10 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=15.4
Q ss_pred ceEEEEeCCCCEEEeeCC
Q 013293 238 RHTISVSSSGRLYSYGWS 255 (446)
Q Consensus 238 ~~s~~l~~~G~vy~~G~n 255 (446)
.+.++++.+|.+|+.|..
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 367899999999999964
No 60
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=44.02 E-value=3.6e+02 Score=27.29 Aligned_cols=153 Identities=15% Similarity=0.153 Sum_probs=73.1
Q ss_pred CEEEEEcCC-ce-EEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEE--cCCcEEEE
Q 013293 125 RVKQIACGD-SH-CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVA--EDGELYGW 200 (446)
Q Consensus 125 ~I~~I~~G~-~h-~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt--~~G~vy~~ 200 (446)
++..+++.. .+ .++=+..|++|.|--++---|- ...... ..|..+....+-++++| +||.|.+|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~----------v~~aHY--Q~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLN----------VLSAHY--QSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHH----------HHHhhc--cceeEEEEeCCCcEEEecCCCccEEEE
Confidence 455665543 33 3344588999999765421110 000111 13555555555555554 78999999
Q ss_pred eCCCCCCcCCCCCCCcccceeeeeec--CceEEEEEecCce--E--EEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEe
Q 013293 201 GWGRYGNLGLGDRNDRLIPEKVATVD--REKMVMVACGWRH--T--ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 274 (446)
Q Consensus 201 G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia~G~~~--s--~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v 274 (446)
---+ +-.......|..+..+. .-.|+++.+|..- + +-...|..+-+|--.. | .....+
T Consensus 151 ~l~~-----lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g----------~LLlti 214 (476)
T KOG0646|consen 151 LLTD-----LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-G----------VLLLTI 214 (476)
T ss_pred EEEe-----ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-c----------eeeEEE
Confidence 5322 11111222333333332 2457777776652 1 1112333333332111 0 112222
Q ss_pred cccCCCcEEEEecCCCeeEEEeCCCcEEEee
Q 013293 275 EALRESFISQISGGWRHTMAVTSDGKLYGWG 305 (446)
Q Consensus 275 ~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG 305 (446)
..+...+...+.-+..+.++=+++|++|..-
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 2222222344556777888888999998743
No 61
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=43.23 E-value=3.4e+02 Score=26.82 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=74.7
Q ss_pred cEEEEEecCC-eeE-EEEcCCC-EEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC-ceEEEEecCCcEEE
Q 013293 72 EIVSVTCGAD-HTT-AYSESCM-QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQS 147 (446)
Q Consensus 72 ~i~~i~~G~~-~~~-~l~~~~g-~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~-~h~~~lt~~G~vy~ 147 (446)
.+..|..|.. |.. +.+.| | .+|+.+. .|. -..+.......+..|..|. .+.++++.||+...
T Consensus 28 ~~~~i~~~~~~h~~~~~s~D-gr~~yv~~r--dg~-----------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPD-GRYLYVANR--DGT-----------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT--SSEEEEEET--TSE-----------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEE
T ss_pred EEEEEcCCCCceeEEEecCC-CCEEEEEcC--CCe-----------EEEEECCcccEEEEEecCCCcceEEEcCCCCEEE
Confidence 4666776554 543 44565 5 4888753 222 2334444455677887775 66899999998665
Q ss_pred EeCCCCCCcCCCCCCCcccceeecc--c----CCccEEEEEeCC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccc
Q 013293 148 WGRNQNGQLGLGTTEDSLVPQKLQA--F----EGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI 218 (446)
Q Consensus 148 wG~n~~gqlg~~~~~~~~~p~~v~~--~----~~~~i~~ia~G~---~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~ 218 (446)
-+....+++..-+......-+.++. . ...++..|.... .+.+.+.+.+++|.--.... .
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~------------~ 161 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP------------K 161 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS------------S
T ss_pred EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc------------c
Confidence 5544444443322221111111110 0 223566665432 35666778888886632110 1
Q ss_pred ceeeeeecCceEEEEEecC-ceEEEEeCCCCEEEeeCCCCCCC
Q 013293 219 PEKVATVDREKMVMVACGW-RHTISVSSSGRLYSYGWSKYGQL 260 (446)
Q Consensus 219 p~~v~~~~~~~i~~ia~G~-~~s~~l~~~G~vy~~G~n~~gql 260 (446)
+ ..+..+..+. -|=.+++.+|+-|.-+.+....+
T Consensus 162 ~--------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 162 N--------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp C--------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred c--------cceeeecccccccccccCcccceeeeccccccee
Confidence 1 1334444444 36678888888776665554444
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=42.51 E-value=2.9e+02 Score=25.76 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=22.8
Q ss_pred cceeecccCCccEEE-EEeCCCeEEEE-EcCCcEEEEeC
Q 013293 166 VPQKLQAFEGVSIKM-VAAGAEHSVAV-AEDGELYGWGW 202 (446)
Q Consensus 166 ~p~~v~~~~~~~i~~-ia~G~~hs~~l-t~~G~vy~~G~ 202 (446)
.|..+..-++ -|+. +-|-.+|+++- ++++.|-.|-.
T Consensus 135 pp~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 135 PPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred CchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEe
Confidence 3444444333 2443 56888887776 78899998854
No 63
>PHA02790 Kelch-like protein; Provisional
Probab=41.76 E-value=2.7e+02 Score=28.56 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=9.9
Q ss_pred EecCCcEEEEeCC
Q 013293 139 VTVEGEVQSWGRN 151 (446)
Q Consensus 139 lt~~G~vy~wG~n 151 (446)
..-+|+||+.|-.
T Consensus 315 v~~~~~iYviGG~ 327 (480)
T PHA02790 315 VPANNKLYVVGGL 327 (480)
T ss_pred EEECCEEEEECCc
Confidence 3458999999853
No 64
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=40.29 E-value=3.1e+02 Score=25.44 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=37.5
Q ss_pred CCCeeEEEeCCCcEEEeeeCCCCCCcC-CCCCCccccEEEecCCCCcEE-EEEecCCeEEEEECCCCEEEEeCCC
Q 013293 288 GWRHTMAVTSDGKLYGWGWNKFGQVGV-GDNVDHCSPVQVKFPLDQKVV-QISCGWRHTLAVTERQNVFSWGRGT 360 (446)
Q Consensus 288 G~~h~~~lt~~G~v~~wG~n~~GqLG~-g~~~~~~~p~~v~~~~~~~i~-~i~~G~~h~~al~~~g~v~~wG~n~ 360 (446)
-++-+..+..||+|++.|-...--.-. ........+..+.++. ... ......+=-+.|..||+||.|+.+.
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~--~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLS--QTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred CccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecch--hhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 478888999999999998443100000 0000011122222221 111 1122333356788999999999864
No 65
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=39.42 E-value=4.5e+02 Score=27.10 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=50.9
Q ss_pred CCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEe
Q 013293 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG 97 (446)
..+-+-|.||..|..+.+-.|..+.=-. ...+..+.+.|..+..+.+--++--+++|.++.|+
T Consensus 211 td~nliit~Gk~H~~Fw~~~~~~l~k~~-----------------~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 211 TDPNLIITCGKGHLYFWTLRGGSLVKRQ-----------------GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWS 273 (626)
T ss_pred CCCcEEEEeCCceEEEEEccCCceEEEe-----------------eccccccceEEEEEEEcCCCCEEeecCCceEEEEe
Confidence 3445567889888888775543331100 01111122345666666665555555559999998
Q ss_pred CCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEE
Q 013293 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (446)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~ 147 (446)
.+.+ ..+ +-+...-|.-+++++..+|++.+
T Consensus 274 ~~~~----------~~~----------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 274 KGTN----------RIS----------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred CCCc----------eEE----------eEeeecCCceEEEEEecCccEee
Confidence 6321 001 11123445667777778887777
No 66
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=38.50 E-value=5.7e+02 Score=28.06 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=46.9
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeC
Q 013293 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~ 150 (446)
.+|..++.-..+.++-.. .++|+|-.+.. -.....+...+|..+..=..|.++++.++.+|.|-.
T Consensus 77 ~~I~alas~~~~vy~A~g--~~i~~~~rgk~-------------i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~ 141 (910)
T KOG1539|consen 77 DKITALASDKDYVYVASG--NKIYAYARGKH-------------IRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKT 141 (910)
T ss_pred CceEEEEecCceEEEecC--cEEEEEEccce-------------EEEEeccccceEEEEeeecceEEEEEccCcEEEEEe
Confidence 478888887777776664 48999875531 112222233467777777789999999999999975
Q ss_pred CC
Q 013293 151 NQ 152 (446)
Q Consensus 151 n~ 152 (446)
..
T Consensus 142 s~ 143 (910)
T KOG1539|consen 142 SS 143 (910)
T ss_pred cc
Confidence 44
No 67
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=37.71 E-value=5.2e+02 Score=27.34 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=15.9
Q ss_pred EecCCCeeEEEeCCCcEEEeee
Q 013293 285 ISGGWRHTMAVTSDGKLYGWGW 306 (446)
Q Consensus 285 Ia~G~~h~~~lt~~G~v~~wG~ 306 (446)
+.....+.-+..-++++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4445666666777899999884
No 68
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=37.36 E-value=2.2e+02 Score=22.92 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=40.0
Q ss_pred EEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEe
Q 013293 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSY 252 (446)
Q Consensus 178 i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~ 252 (446)
.+++.|-..+.+.+..||.|-+-+... ....-..+.......|.--..-....+++++.|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~----------~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN----------SPYSVFEIHSVGFGVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT----------STTGEEEEEEEETTEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC----------cceeEEEEEeccceEEEEEEecceEEEEECCCCeEccc
Confidence 567888778889999999998765431 11111222222222232223334567999999999985
No 69
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=35.80 E-value=2.4e+02 Score=23.02 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=36.2
Q ss_pred cEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEe
Q 013293 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSY 252 (446)
Q Consensus 177 ~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~ 252 (446)
+.+++.|-....+.+..||.|-+-- +......-.++.......|.--.+-....+++++.|++|.-
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~----------~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s 68 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTR----------DESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGS 68 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEeccc----------CCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEc
Confidence 5677777665667777888877321 11111112222222222233223344567899999999984
No 70
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.46 E-value=3.9e+02 Score=24.70 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCC-CEEEe
Q 013293 184 GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSG-RLYSY 252 (446)
Q Consensus 184 G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G-~vy~~ 252 (446)
...|.+-=.+||.||.|-.-..-|+ .+++......+.+++|-..---+++..| .++.|
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~-----------sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQI-----------SKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred cceeEEeccCCceEEEEEeccceee-----------eeeccCCceeEEeeecccCccceeEecCCceece
Confidence 3456666679999999964332111 1222222334667776655444444333 35555
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=32.58 E-value=3.8e+02 Score=24.26 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=12.2
Q ss_pred ceEEEEeCCCCEEEee
Q 013293 238 RHTISVSSSGRLYSYG 253 (446)
Q Consensus 238 ~~s~~l~~~G~vy~~G 253 (446)
--.++++.+|+||+.-
T Consensus 186 pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEEEEEBTTS-EEEEE
T ss_pred CCcceEcCCCCEEEEE
Confidence 4578999999999874
No 72
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=31.75 E-value=4.6e+02 Score=25.00 Aligned_cols=18 Identities=6% Similarity=-0.069 Sum_probs=12.3
Q ss_pred eEEEEECCCCEEEEeCCC
Q 013293 343 HTLAVTERQNVFSWGRGT 360 (446)
Q Consensus 343 h~~al~~~g~v~~wG~n~ 360 (446)
++.+...++++|..|-..
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 344455678999998643
No 73
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=31.56 E-value=4.2e+02 Score=24.50 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=37.2
Q ss_pred eCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccee--------eeeecCceEE-EEEecCceEEEEeCCCCEEEee
Q 013293 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEK--------VATVDREKMV-MVACGWRHTISVSSSGRLYSYG 253 (446)
Q Consensus 183 ~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~--------v~~~~~~~i~-~ia~G~~~s~~l~~~G~vy~~G 253 (446)
--++-++.+..||+|++.|=.. .......|.+ +..+. ... ......+=.+.|..+|+||.|+
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~-------~~t~E~~P~~~~~~~~~~~~~l~--~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSN-------NPTYEFWPPKGPGPGPVTLPFLS--QTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred CCccccceECCCCCEEEEeCcC-------CCcccccCCccCCCCceeeecch--hhhccCccccCceEEEcCCCCEEEEE
Confidence 3467788889999999998433 1111122221 11111 111 1223334467888899999999
Q ss_pred CCC
Q 013293 254 WSK 256 (446)
Q Consensus 254 ~n~ 256 (446)
.+.
T Consensus 188 n~~ 190 (243)
T PF07250_consen 188 NRG 190 (243)
T ss_pred cCC
Confidence 754
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=30.85 E-value=2.6e+02 Score=28.44 Aligned_cols=150 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCC
Q 013293 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (446)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n 151 (446)
.|.-+.-|..+.....+..-.+|-|+ .|++++. |..+..-.--++.+--++..++.-..
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~----------------~~v~ik~-----i~~~~~hsmP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENR----------------IPVPIKN-----IADPEMHTMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcC----------------CCccchh-----hcchhhccCcceecCCCCCeehhhcc
Q ss_pred CCCCcCCCCCCCcccceeecccCCccE------EEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee
Q 013293 152 QNGQLGLGTTEDSLVPQKLQAFEGVSI------KMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (446)
Q Consensus 152 ~~gqlg~~~~~~~~~p~~v~~~~~~~i------~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~ 225 (446)
.+...-.. ......-.+-..+++..+ ++.+-...+.+-=+.+|+||.|+++..-.+...... ...-..+..-
T Consensus 406 dN~i~ifs-~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wH 483 (503)
T KOG0282|consen 406 DNYIAIFS-TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWH 483 (503)
T ss_pred CceEEEEe-cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEec
Q ss_pred cCceEEEEEecCceEEEEeCCCCEEEe
Q 013293 226 DREKMVMVACGWRHTISVSSSGRLYSY 252 (446)
Q Consensus 226 ~~~~i~~ia~G~~~s~~l~~~G~vy~~ 252 (446)
+.+.=+-+.||+ +|.|..|
T Consensus 484 P~e~Skvat~~w--------~G~Ikiw 502 (503)
T KOG0282|consen 484 PVEPSKVATCGW--------DGLIKIW 502 (503)
T ss_pred CCCcceeEeccc--------CceeEec
No 75
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.70 E-value=8.3e+02 Score=27.64 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCce--EEEEecCCcEEEEeC
Q 013293 123 SLRVKQIACGDSH--CLAVTVEGEVQSWGR 150 (446)
Q Consensus 123 ~~~I~~I~~G~~h--~~~lt~~G~vy~wG~ 150 (446)
...|.+|+....+ .++++.||.|+.|-.
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 4579999988877 899999998877763
No 76
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=30.22 E-value=2.3e+02 Score=28.10 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=45.5
Q ss_pred CEEEEEcCCce---EEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEe
Q 013293 125 RVKQIACGDSH---CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWG 201 (446)
Q Consensus 125 ~I~~I~~G~~h---~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G 201 (446)
.+..+.+++.+ .+++..+|++..|-.+. ...++ .+...+.+|..=....+|++..|+||++.
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~--------------Wt~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNV--------------LKALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCe--------------eeEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34456777775 77888899999996422 23333 24557889988888899999999999886
No 77
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=30.19 E-value=1.3e+02 Score=28.95 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=35.5
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC--ceEEEEecCCcEEEEeC
Q 013293 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 90 ~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~--~h~~~lt~~G~vy~wG~ 150 (446)
.|+||+|-.... ++...++......+..|.|.+... ...++++++|.||.|-.
T Consensus 328 ~g~v~vwdL~~~--------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDNN--------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCcEEEEECCCC--------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 399999963221 122344555555677888888765 45667789999999964
No 78
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=30.01 E-value=5.5e+02 Score=25.32 Aligned_cols=17 Identities=12% Similarity=0.050 Sum_probs=13.9
Q ss_pred CCeEEEEECCCCEEEEe
Q 013293 341 WRHTLAVTERQNVFSWG 357 (446)
Q Consensus 341 ~~h~~al~~~g~v~~wG 357 (446)
..+.++.+.+|+||++-
T Consensus 376 ~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 376 DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCceEEEEe
Confidence 45888889999999874
No 79
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=29.90 E-value=50 Score=21.47 Aligned_cols=17 Identities=24% Similarity=0.618 Sum_probs=11.9
Q ss_pred CCeeEEEeCCCcEEEee
Q 013293 289 WRHTMAVTSDGKLYGWG 305 (446)
Q Consensus 289 ~~h~~~lt~~G~v~~wG 305 (446)
..|+++...+++||++|
T Consensus 3 ~~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFG 19 (49)
T ss_dssp BS-EEEEE-TTEEEEE-
T ss_pred ceEEEEEEeCCeEEEEC
Confidence 36888888889999998
No 80
>PLN02153 epithiospecifier protein
Probab=29.80 E-value=5.1e+02 Score=24.93 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=11.6
Q ss_pred CeEEEEEcCCcEEEEeCC
Q 013293 186 EHSVAVAEDGELYGWGWG 203 (446)
Q Consensus 186 ~hs~~lt~~G~vy~~G~n 203 (446)
.|++++. +++||++|-.
T Consensus 244 ~~~~~~~-~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVV-GKYIIIFGGE 260 (341)
T ss_pred eeeeEEE-CCEEEEECcc
Confidence 3555444 6899999853
No 81
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=29.10 E-value=3.2e+02 Score=22.25 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=33.5
Q ss_pred EEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEe
Q 013293 180 MVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSY 252 (446)
Q Consensus 180 ~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~ 252 (446)
++.|-..+.+.+..||.|-+-.+ ......-.++.......|.--..-....+++++.|+||+-
T Consensus 2 qLy~~~~~~L~I~~dG~V~Gt~~----------~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~ly~s 64 (123)
T cd00058 2 QLYCRTGFHLQILPDGTVDGTRD----------DSSSYTILERIAVAVGVVSIKGVASCRYLCMNKCGKLYGS 64 (123)
T ss_pred eEEEcCCeEEEEcCCCcEecccC----------CCCCCceEEEEECCCCEEEEEEcccceEEEECCCCCEEEC
Confidence 34454466777888998874432 1111122222222222222222334567899999999974
No 82
>PHA02790 Kelch-like protein; Provisional
Probab=28.67 E-value=2.3e+02 Score=29.18 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=10.1
Q ss_pred EEEeCCeEEEEeCC
Q 013293 33 ALLSGNIVCSWGRG 46 (446)
Q Consensus 33 ~l~~~g~v~~wG~n 46 (446)
+..-+|.+|+-|-.
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34568899999853
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=27.72 E-value=5.1e+02 Score=24.20 Aligned_cols=148 Identities=22% Similarity=0.294 Sum_probs=70.6
Q ss_pred CCeeecCCCCCcEEE-EEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEc-CCceEEE
Q 013293 61 SPTQLSALDGHEIVS-VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC-GDSHCLA 138 (446)
Q Consensus 61 ~P~~v~~~~~~~i~~-i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~-G~~h~~~ 138 (446)
.|..+..-.+ .|+. +-|-.+++++-..+++.|-.|-.-..-. ...+..+. .|+++-. -+.+.+-
T Consensus 135 pp~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-----v~sL~~~s--------~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 135 PPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-----VQSLEFNS--------PVTSLEVSQDGRILT 200 (334)
T ss_pred CchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEeccCcE-----EEEEecCC--------CCcceeeccCCCEEE
Confidence 3444444333 3555 4577777766634449999996322110 01111222 2333322 2345555
Q ss_pred EecCCcEEEEeCCCCCCcCCCCCCCcccceeecc--cCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCc
Q 013293 139 VTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA--FEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDR 216 (446)
Q Consensus 139 lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~--~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~ 216 (446)
+..-+.|-.|-.+..+.| .....|..+.. |...+ +..++=-+|+.+|-+-.+.--.++.
T Consensus 201 ia~gssV~Fwdaksf~~l-----Ks~k~P~nV~SASL~P~k--------~~fVaGged~~~~kfDy~TgeEi~~------ 261 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLL-----KSYKMPCNVESASLHPKK--------EFFVAGGEDFKVYKFDYNTGEEIGS------ 261 (334)
T ss_pred EecCceeEEeccccccce-----eeccCccccccccccCCC--------ceEEecCcceEEEEEeccCCceeee------
Confidence 555566777777665543 22334444432 11111 1122223456666665443222221
Q ss_pred ccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeC
Q 013293 217 LIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGW 254 (446)
Q Consensus 217 ~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~ 254 (446)
. .+=.-|.-|++-.+-+|++|+-|+
T Consensus 262 --------~-----nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 262 --------Y-----NKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred --------c-----ccCCCCceEEEEECCCCceeeccC
Confidence 0 011223447777788888888885
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=27.50 E-value=5.6e+02 Score=25.87 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEe--CCCcEEEeeeCCCCCCcC
Q 013293 237 WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVT--SDGKLYGWGWNKFGQVGV 314 (446)
Q Consensus 237 ~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt--~~G~v~~wG~n~~GqLG~ 314 (446)
..+++++-.||-+|.-|. ..+++-.-+......-.+.+. ...+|+.|+.+.+-....+ +|+.|..|-....
T Consensus 349 ~~ts~~fHpDgLifgtgt-~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl----- 421 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGT-PDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKL----- 421 (506)
T ss_pred eeEEeeEcCCceEEeccC-CCceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhh-----
Q ss_pred CCCCCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEE
Q 013293 315 GDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSW 356 (446)
Q Consensus 315 g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~w 356 (446)
.....+.++....+..+.--..-++......+|+..
T Consensus 422 ------~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 422 ------KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred ------cccceeeccccccceeEEEcCCCCeEEeecceeEEE
No 85
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=26.86 E-value=6.2e+02 Score=24.90 Aligned_cols=277 Identities=9% Similarity=0.079 Sum_probs=0.0
Q ss_pred eeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCc-e------
Q 013293 63 TQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS-H------ 135 (446)
Q Consensus 63 ~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~-h------ 135 (446)
..+..-..+-+..|..|...-.+++.| |+...--...+-++-+|...+...-.-...+. .+.+|..+.. +
T Consensus 30 ~ViD~~~~~v~g~i~~G~~P~~~~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 30 YTIDGEAGRVLGMTDGGFLPNPVVASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTY 106 (352)
T ss_pred EEEECCCCEEEEEEEccCCCceeECCC-CCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCc
Q ss_pred --EEEEecCCc-EEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCC
Q 013293 136 --CLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGD 212 (446)
Q Consensus 136 --~~~lt~~G~-vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~ 212 (446)
.++|+.||+ +|..-.+....+..-+.....+-..+.-... ..-...+....+++..||+.........|+ ..-.
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~--~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~-~~~~ 183 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC--YHIFPTANDTFFMHCRDGSLAKVGYGTKGN-PKIK 183 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC--cEEEEecCCccEEEeecCceEEEEecCCCc-eEEe
Q ss_pred CCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEE--EEecCCC
Q 013293 213 RNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFIS--QISGGWR 290 (446)
Q Consensus 213 ~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~--~Ia~G~~ 290 (446)
......+...+.+... ........-++++..|+||..-- ......+.....+...... ...-|..
T Consensus 184 ~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~----------~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDL----------SSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred eeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEec----------CCCcceecceeeeccccccccccCCCcc
Q ss_pred eeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCC-eEEEEECCCCEEEEeCCC
Q 013293 291 HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR-HTLAVTERQNVFSWGRGT 360 (446)
Q Consensus 291 h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~-h~~al~~~g~v~~wG~n~ 360 (446)
.-++++.+|+-.---.+..+. -.+...-..-..+.....+.+..|..|.. +.++++.||+.+.+-.|.
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~--~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAK--WTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred eeEEEcCCCCEEEEEecCCcc--ccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
No 86
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=25.52 E-value=3.7e+02 Score=21.91 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=35.6
Q ss_pred CEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEE
Q 013293 125 RVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (446)
Q Consensus 125 ~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~ 200 (446)
+.+++-|-..+.+.+..||.|-.--.. .....--.+.......|.--..-....+++++.|+||+-
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~~~----------~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s 68 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTRDE----------SSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGS 68 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecccCC----------CCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEc
Confidence 566777766566777788887632211 011111112222222233223344667899999999963
No 87
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=25.41 E-value=2.5e+02 Score=27.81 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=41.8
Q ss_pred EEEEEecCCe---eEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEe
Q 013293 73 IVSVTCGADH---TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (446)
Q Consensus 73 i~~i~~G~~~---~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG 149 (446)
+..+.++.++ .+++..+ |++..|-.+.+- .++ .....+.+|..-....+|++..|+||.+.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~-g~l~~w~~~~Wt--------------~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRD-GKINYWDGNVLK--------------ALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeec-CcEeeecCCeee--------------Ecc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 3334556664 5556666 888888643221 222 24567999999999999999999999987
No 88
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=25.28 E-value=9.7e+02 Score=26.64 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=37.7
Q ss_pred cCCceEEEEeCC-eEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEE
Q 013293 27 GASHSVALLSGN-IVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYS 95 (446)
Q Consensus 27 G~~~~~~l~~~g-~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~ 95 (446)
++...++++.+| .++++|++..=.. .....+...|..+.. .+..|..|++-..|.+.-+++ +.|-.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~-~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~-~tv~~ 80 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRK-WKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQ-NTVLR 80 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEE-eecCCcccCCchhhc-cCceeEEEeecccceEEeecc-ceEEE
Confidence 445566666665 4566665532111 111122255655543 446788899988888888887 75443
No 89
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=23.97 E-value=1.5e+02 Score=16.84 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.4
Q ss_pred eEEEEecCCcEEEEeCC
Q 013293 135 HCLAVTVEGEVQSWGRN 151 (446)
Q Consensus 135 h~~~lt~~G~vy~wG~n 151 (446)
|.++++.+|+||..-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 66788899999987644
No 90
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=23.91 E-value=1.2e+02 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=25.4
Q ss_pred CCCEEEEEcC-CceEEEEecCCcEEEEeCCCCCCc
Q 013293 123 SLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQL 156 (446)
Q Consensus 123 ~~~I~~I~~G-~~h~~~lt~~G~vy~wG~n~~gql 156 (446)
+..=..|+|. ..-.++|++||.+|.-+--+.|.+
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 4456788999 889999999999999886556554
No 91
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=23.56 E-value=1e+03 Score=26.18 Aligned_cols=162 Identities=11% Similarity=0.060 Sum_probs=82.3
Q ss_pred CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEE--ecCceEEEEeCCCCEEEeeCCCCCCCC
Q 013293 184 GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVA--CGWRHTISVSSSGRLYSYGWSKYGQLG 261 (446)
Q Consensus 184 G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia--~G~~~s~~l~~~G~vy~~G~n~~gqlG 261 (446)
-...++++|++|.|-.---..+.. ..+..-.+..+..+. ....+.+++|++|++|.+-.++-- .|
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~~------------saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~G 559 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDIDL------------STLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-SA 559 (735)
T ss_pred CcceEEEEecCCEEEeccccccch------------hccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-cC
Confidence 345678888888766432222111 111111233444443 334468899999999999765432 12
Q ss_pred CCCCCCceeeEEecccCCCcEEEEecCCC--eeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEE--
Q 013293 262 HGDFKDHLVPCQLEALRESFISQISGGWR--HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQI-- 337 (446)
Q Consensus 262 ~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~--h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i-- 337 (446)
.+. ....-..+....+..|+.+.+... +.+++|+.|..+-.=...+-....+ .-..+.+.....++.+
T Consensus 560 R~a--GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~Ra------GKgvi~Lk~~d~lv~v~~ 631 (735)
T TIGR01062 560 RGQ--GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKA------GKALINLPENASVIAPLP 631 (735)
T ss_pred ccC--CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcC------CeEEEEeCCCCEEEEEEE
Confidence 211 111112222334556776665433 4677888886665443332111100 0011111222233321
Q ss_pred EecC-CeEEEEECCCCEEEEeCCCCCCCCC
Q 013293 338 SCGW-RHTLAVTERQNVFSWGRGTNGQLGH 366 (446)
Q Consensus 338 ~~G~-~h~~al~~~g~v~~wG~n~~gqLG~ 366 (446)
..+. .+.++++++|.++.+--++--++|.
T Consensus 632 v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 632 VNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred EcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 2233 2577899999999998777666654
No 92
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.39 E-value=1e+03 Score=26.11 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=61.3
Q ss_pred ceEEEEeCCeEEEEeCCCCCccCCC----CCC---C--ccCCeeec-CCCCCcEEEEEecCCee-EEEEcCCCEEEE---
Q 013293 30 HSVALLSGNIVCSWGRGEDGQLGHG----DAE---D--RLSPTQLS-ALDGHEIVSVTCGADHT-TAYSESCMQVYS--- 95 (446)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~----~~~---~--~~~P~~v~-~~~~~~i~~i~~G~~~~-~~l~~~~g~v~~--- 95 (446)
..++...|+.+|+|=.+....+-.. ..+ . ....+.+. ......|..|....... ++|.-. ..|.+
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~-~~v~V~~L 112 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGP-RGVVVLEL 112 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcC-CcEEEEEe
Confidence 4455556789999987765543221 111 0 11112221 11224577777665444 455544 32322
Q ss_pred ---EeCCCCCCcCCCCCCCceeeeeeccc---CCCCEEEEE-----cCCceEEEEecCCcEEEEeC
Q 013293 96 ---WGWGDFGRLGHGNSSDLFTPLPIKAL---HSLRVKQIA-----CGDSHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 96 ---wG~n~~gqlG~~~~~~~~~p~~v~~l---~~~~I~~I~-----~G~~h~~~lt~~G~vy~wG~ 150 (446)
||.+..-+.|.........|.--..+ ....|+++. ..+.|.++||+|+.+-.+-.
T Consensus 113 P~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 113 PRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred ccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 66554433333322222222222222 234677874 34799999999998876653
No 93
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=23.22 E-value=2.2e+02 Score=27.55 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=37.7
Q ss_pred EEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEEEEEe
Q 013293 33 ALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYSWG 97 (446)
Q Consensus 33 ~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v~~wG 97 (446)
+....|+||+|--.. .+....++......+..|++.+...+ ..+++.++ +.||-|-
T Consensus 324 ~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd-~~Vwrwd 381 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD-GTVWRWD 381 (385)
T ss_pred hccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCC-CcEEEEE
Confidence 445789999996322 12335667777777778888776544 44556666 9999984
No 94
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=23.15 E-value=5e+02 Score=23.80 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=37.0
Q ss_pred EEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCC--eEEEEEcCCcEEEEeC
Q 013293 129 IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (446)
Q Consensus 129 I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--hs~~lt~~G~vy~~G~ 202 (446)
|.-...-+++.+.+|.||.|-.|.+|++..- +......-...|..+.. -.+.-..+|+++.|-.
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~----------~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGAHSDR----------VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred ecccCceEEeecccceEEEecCCccchHHHh----------hhcccccceeccccccccceeEEeccCCceeeecc
Confidence 3444566788999999999999877765321 11111111223444444 3344456788887743
No 95
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=23.08 E-value=4.3e+02 Score=26.85 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=40.9
Q ss_pred CCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeCCCCCCCC--C
Q 013293 289 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLG--H 366 (446)
Q Consensus 289 ~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG--~ 366 (446)
..+.++...+|+||.|--+..-.+ . +.++=-|=...++++.-+|+.++.|++. |-.- .
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~------------~-------rf~D~G~v~gts~~~S~ng~ylA~GS~~-GiVNIYd 415 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCL------------H-------RFVDDGSVHGTSLCISLNGSYLATGSDS-GIVNIYD 415 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceE------------E-------EEeecCccceeeeeecCCCceEEeccCc-ceEEEec
Confidence 466677778999999987653111 0 1111111133567788888999998754 1111 1
Q ss_pred CC-CCCCCCcEEeccc
Q 013293 367 GE-SSDRNSPKIIEPL 381 (446)
Q Consensus 367 g~-~~~~~~P~~i~~l 381 (446)
++ .-....|++|..+
T Consensus 416 ~~s~~~s~~PkPik~~ 431 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTV 431 (514)
T ss_pred cchhhccCCCCchhhh
Confidence 11 2234667776544
No 96
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.57 E-value=1e+02 Score=34.39 Aligned_cols=56 Identities=18% Similarity=0.421 Sum_probs=34.5
Q ss_pred CcEEEE-EecCCeEEEEE--CCCCEEEEeCCCCCCCCC-CCCC--------CCCCcEEecccCCCCCc
Q 013293 332 QKVVQI-SCGWRHTLAVT--ERQNVFSWGRGTNGQLGH-GESS--------DRNSPKIIEPLSLDGSK 387 (446)
Q Consensus 332 ~~i~~i-~~G~~h~~al~--~~g~v~~wG~n~~gqLG~-g~~~--------~~~~P~~i~~l~~~~~~ 387 (446)
..|..+ .|..+-.++|+ +|+++++|+-|+.-+||- +... -...|..+..-+++|..
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence 345554 36666556665 689999999998555552 1111 13556666666667653
No 97
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=22.46 E-value=7.4e+02 Score=24.25 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred EEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCC--------CCcccceeeeeecCc-eEEEEEecCceEEEEeCCCC-E
Q 013293 180 MVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDR--------NDRLIPEKVATVDRE-KMVMVACGWRHTISVSSSGR-L 249 (446)
Q Consensus 180 ~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~--------~~~~~p~~v~~~~~~-~i~~ia~G~~~s~~l~~~G~-v 249 (446)
.|.+|...-+++..||+-+.--.-.+-....|.. .....|..-..++.. +...+. +.+.++|+.||+ +
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~--~~~~~~ls~dgk~~ 109 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP--YKNMFALSADGKFL 109 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS----GGGEEE-TTSSEE
T ss_pred EeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc--cccceEEccCCcEE
Q ss_pred EEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecC
Q 013293 250 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP 329 (446)
Q Consensus 250 y~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 329 (446)
|.+--...--...-+......-..++.+.. .--.-.|..-...|..||++........|+. ..+...+..+
T Consensus 110 ~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC--~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~-------~~~~t~~F~~ 180 (342)
T PF06433_consen 110 YVQNFTPATSVTVVDLAAKKVVGEIDTPGC--WLIYPSGNRGFSMLCGDGSLLTVTLDADGKE-------AQKSTKVFDP 180 (342)
T ss_dssp EEEEESSSEEEEEEETTTTEEEEEEEGTSE--EEEEEEETTEEEEEETTSCEEEEEETSTSSE-------EEEEEEESST
T ss_pred EEEccCCCCeEEEEECCCCceeeeecCCCE--EEEEecCCCceEEEecCCceEEEEECCCCCE-------eEeeccccCC
Q ss_pred CCCcEEEEEe---cCCeEEEEECCCCEEE
Q 013293 330 LDQKVVQISC---GWRHTLAVTERQNVFS 355 (446)
Q Consensus 330 ~~~~i~~i~~---G~~h~~al~~~g~v~~ 355 (446)
.+..+..-.. ...+.++++-+|+||.
T Consensus 181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~ 209 (342)
T PF06433_consen 181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYS 209 (342)
T ss_dssp TTS-B-S--EEETTTTEEEEEBTTSEEEE
T ss_pred CCcccccccceECCCCeEEEEecCCEEEE
No 98
>PLN02772 guanylate kinase
Probab=22.19 E-value=3.4e+02 Score=27.17 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=35.4
Q ss_pred CCeeEEEEcCCCEEEEEeC-CCCCCcCCC------CCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCC
Q 013293 80 ADHTTAYSESCMQVYSWGW-GDFGRLGHG------NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (446)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~-n~~gqlG~~------~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n 151 (446)
..|++....+ ++|+||- |+.+.+-.. .+.....|...-... .+.+.|++++-.+.+++..+..
T Consensus 26 ~~~tav~igd--k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-------~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 26 NRETSVTIGD--KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP-------KPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CcceeEEECC--EEEEEcccCCCccccceEEEEECCCCcEecccccCCCC-------CCCCcceEEEECCceEEEEeCC
Confidence 3456655544 8999994 443323211 112233333221111 1346899999999999999853
No 99
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=21.06 E-value=1e+02 Score=20.32 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=13.5
Q ss_pred cCCeeEEEEcCCCEEEEE
Q 013293 79 GADHTTAYSESCMQVYSW 96 (446)
Q Consensus 79 G~~~~~~l~~~~g~v~~w 96 (446)
++.++.++.+|+|.|-+|
T Consensus 33 sGsfs~a~N~dnG~vRiW 50 (51)
T PF09081_consen 33 SGSFSQAVNEDNGQVRIW 50 (51)
T ss_dssp SS--EEEEEETTTTEEEE
T ss_pred ccchHhhhhccCCcEEee
Confidence 567888999888999888
No 100
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=20.96 E-value=62 Score=23.96 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=9.3
Q ss_pred CE-EEEeCCCCCC
Q 013293 352 NV-FSWGRGTNGQ 363 (446)
Q Consensus 352 ~v-~~wG~n~~gq 363 (446)
.+ |+||+|.+-+
T Consensus 57 sv~waWGSNKnk~ 69 (84)
T PF07312_consen 57 SVYWAWGSNKNKQ 69 (84)
T ss_pred ceeeeeccCCCCC
Confidence 46 9999998654
No 101
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=20.63 E-value=1.5e+02 Score=22.22 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=24.5
Q ss_pred ccEEEEEeC-CCeEEEEEcCCcEEEEeCCCCCCc
Q 013293 176 VSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNL 208 (446)
Q Consensus 176 ~~i~~ia~G-~~hs~~lt~~G~vy~~G~n~~gql 208 (446)
..=..|+|. ....++|++||.+|.-+--..|++
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 345778999 888999999999998886555554
Done!