Query 013293
Match_columns 446
No_of_seqs 472 out of 2206
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 4.7E-84 1.6E-88 647.5 48.3 398 12-409 9-406 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 4.6E-74 1.6E-78 572.1 35.3 368 23-393 5-376 (389)
3 3mvd_K Regulator of chromosome 100.0 1.6E-71 5.3E-76 560.4 39.3 373 12-395 17-409 (423)
4 1a12_A RCC1, regulator of chro 100.0 1.6E-70 5.6E-75 551.0 38.6 363 23-394 12-399 (413)
5 3of7_A Regulator of chromosome 100.0 1.2E-69 4.2E-74 553.3 36.3 376 15-394 6-440 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 1.3E-68 4.4E-73 532.8 36.7 333 18-351 52-388 (389)
7 4d9s_A UVB-resistance protein 100.0 2.4E-66 8.3E-71 519.2 41.9 346 71-419 16-366 (406)
8 1a12_A RCC1, regulator of chro 100.0 9E-65 3.1E-69 509.4 39.0 332 15-353 55-412 (413)
9 3mvd_K Regulator of chromosome 100.0 1.6E-63 5.5E-68 501.9 43.1 332 12-352 68-420 (423)
10 3of7_A Regulator of chromosome 100.0 1.1E-62 3.7E-67 502.1 39.8 327 17-349 65-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 6.6E-53 2.3E-57 400.4 30.0 257 15-354 20-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 3.2E-52 1.1E-56 395.6 28.2 251 38-366 2-252 (282)
13 1p22_A F-BOX/WD-repeat protein 97.4 0.13 4.3E-06 50.3 36.0 282 18-360 133-414 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 96.6 0.61 2.1E-05 45.4 37.9 265 21-359 122-390 (445)
15 1p22_A F-BOX/WD-repeat protein 96.4 0.74 2.5E-05 44.7 33.7 229 72-358 135-363 (435)
16 4gbf_A Phikz131; 7-bladed beta 96.0 0.01 3.6E-07 52.7 6.3 84 176-272 309-395 (400)
17 2zwa_A Leucine carboxyl methyl 95.7 1.7 5.7E-05 45.6 23.1 18 290-307 657-674 (695)
18 4gbf_A Phikz131; 7-bladed beta 95.7 0.022 7.5E-07 50.7 7.0 68 280-360 309-376 (400)
19 2zwa_A Leucine carboxyl methyl 95.4 1.7 5.9E-05 45.5 21.7 150 133-306 441-615 (695)
20 3odt_A Protein DOA1; ubiquitin 94.3 2.9 9.8E-05 37.7 32.9 271 16-359 16-295 (313)
21 2ovr_B FBW7, F-BOX/WD repeat p 94.1 4.4 0.00015 39.1 39.3 231 17-307 158-390 (445)
22 1gxr_A ESG1, transducin-like e 93.5 4.3 0.00015 36.9 35.3 276 25-359 8-295 (337)
23 4aez_A CDC20, WD repeat-contai 93.4 5.6 0.00019 37.8 32.9 266 24-359 99-379 (401)
24 3no0_A DNA gyrase subunit A; D 93.1 5 0.00017 36.6 20.4 218 122-366 22-252 (276)
25 1k3i_A Galactose oxidase precu 92.6 11 0.00037 38.9 29.0 72 289-362 457-533 (656)
26 3v7d_B Cell division control p 92.0 9.1 0.00031 36.9 38.1 278 21-359 125-420 (464)
27 3mmy_A MRNA export factor; mRN 90.3 11 0.00037 34.6 28.4 234 71-359 40-303 (368)
28 1k3i_A Galactose oxidase precu 90.0 19 0.00065 37.0 26.4 72 238-311 458-534 (656)
29 3odt_A Protein DOA1; ubiquitin 89.3 12 0.00039 33.5 31.1 186 71-308 105-296 (313)
30 1gxr_A ESG1, transducin-like e 88.7 13 0.00045 33.4 36.3 224 71-356 98-333 (337)
31 3i2n_A WD repeat-containing pr 88.6 14 0.00048 33.6 31.9 289 17-358 17-351 (357)
32 3no0_A DNA gyrase subunit A; D 87.3 17 0.00057 33.0 22.9 217 17-261 22-251 (276)
33 1sq9_A Antiviral protein SKI8; 86.8 20 0.00068 33.4 33.0 249 16-307 14-321 (397)
34 3zwl_B Eukaryotic translation 86.6 19 0.00064 32.9 34.4 201 17-254 31-247 (369)
35 1sq9_A Antiviral protein SKI8; 86.6 20 0.0007 33.3 25.9 120 71-203 17-156 (397)
36 4aez_A CDC20, WD repeat-contai 86.5 22 0.00075 33.5 31.0 226 73-358 96-334 (401)
37 3sfz_A APAF-1, apoptotic pepti 85.6 48 0.0016 36.6 25.1 219 83-357 1018-1246(1249)
38 3mmy_A MRNA export factor; mRN 85.2 22 0.00075 32.4 21.4 193 122-360 38-247 (368)
39 3k26_A Polycomb protein EED; W 84.8 23 0.00078 32.2 34.1 303 17-358 17-364 (366)
40 4gqb_B Methylosome protein 50; 84.3 26 0.0009 32.5 31.1 229 72-358 84-329 (344)
41 4g56_B MGC81050 protein; prote 83.8 28 0.00095 32.4 35.0 231 72-360 96-343 (357)
42 3no2_A Uncharacterized protein 83.4 25 0.00085 31.6 26.3 166 174-366 86-267 (276)
43 3v7d_B Cell division control p 81.9 37 0.0013 32.4 34.4 239 73-360 125-381 (464)
44 1q7f_A NHL, brain tumor CG1071 81.6 28 0.00095 30.8 23.2 17 291-307 210-226 (286)
45 4a11_B DNA excision repair pro 80.7 35 0.0012 31.5 34.2 299 17-361 42-366 (408)
46 3jrp_A Fusion protein of prote 80.7 34 0.0012 31.2 29.2 242 18-308 11-287 (379)
47 3ii7_A Kelch-like protein 7; p 79.0 25 0.00085 31.8 12.6 17 237-254 192-208 (306)
48 3vl1_A 26S proteasome regulato 78.9 42 0.0015 31.3 32.9 266 24-360 64-365 (420)
49 3uc1_A DNA gyrase subunit A; D 78.4 43 0.0015 31.1 23.2 224 129-367 49-286 (327)
50 3vgz_A Uncharacterized protein 78.1 40 0.0014 30.5 29.1 24 282-305 266-290 (353)
51 1pgu_A Actin interacting prote 76.2 63 0.0022 31.9 32.8 187 72-307 162-365 (615)
52 3no2_A Uncharacterized protein 75.7 44 0.0015 29.9 28.4 166 122-314 86-267 (276)
53 2uvk_A YJHT; unknown function, 74.4 54 0.0018 30.2 16.9 17 133-150 110-126 (357)
54 2aq5_A Coronin-1A; WD40 repeat 74.0 58 0.002 30.4 29.5 154 24-202 40-205 (402)
55 3jrp_A Fusion protein of prote 73.9 53 0.0018 29.9 31.1 238 72-359 13-286 (379)
56 2aq5_A Coronin-1A; WD40 repeat 73.2 61 0.0021 30.3 29.0 149 76-254 40-205 (402)
57 3jro_A Fusion protein of prote 72.8 93 0.0032 32.3 27.2 245 18-308 9-285 (753)
58 1r5m_A SIR4-interacting protei 70.1 68 0.0023 29.6 33.0 239 18-307 108-360 (425)
59 1rwi_B Serine/threonine-protei 70.1 54 0.0018 28.4 16.4 16 291-306 237-252 (270)
60 4asc_A Kelch repeat and BTB do 69.0 66 0.0023 29.0 15.2 16 134-150 91-106 (315)
61 2vpj_A Kelch-like protein 12; 68.6 52 0.0018 29.4 11.9 18 133-151 104-121 (301)
62 1suu_A DNA gyrase subunit A; t 68.6 72 0.0025 29.3 22.7 219 133-367 8-238 (312)
63 3sjl_D Methylamine dehydrogena 68.2 84 0.0029 29.9 20.8 261 73-355 72-348 (386)
64 3uc1_A DNA gyrase subunit A; D 67.9 77 0.0026 29.4 23.0 220 76-313 49-284 (327)
65 4g56_B MGC81050 protein; prote 67.6 77 0.0026 29.2 28.9 190 72-309 141-344 (357)
66 2xyi_A Probable histone-bindin 66.9 88 0.003 29.6 26.8 200 82-307 196-409 (430)
67 3mkq_A Coatomer beta'-subunit; 66.3 1.2E+02 0.0043 31.1 32.6 231 19-308 14-259 (814)
68 1xip_A Nucleoporin NUP159; bet 66.0 30 0.001 33.1 9.8 64 126-202 90-153 (388)
69 1suu_A DNA gyrase subunit A; t 65.4 83 0.0029 28.8 21.1 218 76-308 54-283 (312)
70 3k26_A Polycomb protein EED; W 65.3 78 0.0027 28.5 29.5 258 18-306 69-364 (366)
71 3fvz_A Peptidyl-glycine alpha- 65.0 82 0.0028 28.6 20.6 22 26-47 23-44 (329)
72 1q7f_A NHL, brain tumor CG1071 64.1 75 0.0026 27.8 24.0 16 239-254 210-225 (286)
73 2vpj_A Kelch-like protein 12; 62.7 63 0.0022 28.8 11.2 17 185-202 104-120 (301)
74 3ii7_A Kelch-like protein 7; p 62.6 86 0.0029 28.0 12.5 17 289-306 192-208 (306)
75 2xn4_A Kelch-like protein 2; s 62.4 57 0.0019 29.2 10.8 16 134-150 101-116 (302)
76 4gga_A P55CDC, cell division c 60.4 1.1E+02 0.0038 28.6 34.9 140 28-203 115-260 (420)
77 1wp5_A Topoisomerase IV; broke 59.9 1.1E+02 0.0037 28.3 23.2 230 123-366 38-283 (323)
78 2woz_A Kelch repeat and BTB do 57.7 1.1E+02 0.0037 27.6 12.5 16 238-254 151-166 (318)
79 2xyi_A Probable histone-bindin 57.0 1.3E+02 0.0045 28.3 28.2 260 72-359 130-409 (430)
80 3p6j_A De novo designed beta-t 56.3 77 0.0026 25.5 13.2 108 122-252 28-139 (142)
81 3jro_A Fusion protein of prote 56.0 1.9E+02 0.0065 29.9 28.2 196 72-308 11-238 (753)
82 3zwl_B Eukaryotic translation 55.9 1.1E+02 0.0039 27.3 27.0 200 71-307 33-248 (369)
83 1pgu_A Actin interacting prote 52.4 1.8E+02 0.0061 28.5 33.1 189 18-254 160-364 (615)
84 3gre_A Serine/threonine-protei 52.4 1.5E+02 0.0052 27.7 18.0 99 30-152 184-292 (437)
85 1xip_A Nucleoporin NUP159; bet 50.8 1.7E+02 0.0058 27.8 14.1 109 60-200 79-187 (388)
86 1yfq_A Cell cycle arrest prote 50.6 1.4E+02 0.0046 26.6 30.2 247 72-358 13-280 (342)
87 3vl1_A 26S proteasome regulato 50.3 1.6E+02 0.0053 27.2 33.6 193 71-308 140-365 (420)
88 3gre_A Serine/threonine-protei 50.0 1.6E+02 0.0056 27.4 26.5 161 18-202 63-243 (437)
89 1r5m_A SIR4-interacting protei 49.5 1.6E+02 0.0053 27.0 31.7 237 72-359 110-360 (425)
90 1zi0_A DNA gyrase subunit A; b 48.6 1.6E+02 0.0054 26.8 25.1 222 123-361 41-278 (307)
91 1zvt_A Topoisomerase IV subuni 48.3 1.5E+02 0.005 26.3 14.9 157 83-262 5-169 (256)
92 4a11_B DNA excision repair pro 45.5 1.8E+02 0.006 26.5 29.4 251 17-310 98-367 (408)
93 3fvz_A Peptidyl-glycine alpha- 45.2 1.7E+02 0.0059 26.3 22.7 21 79-100 24-44 (329)
94 3mkq_A Coatomer beta'-subunit; 45.1 2.7E+02 0.0092 28.5 29.6 229 72-359 15-258 (814)
95 3p6j_A De novo designed beta-t 42.8 1.3E+02 0.0044 24.1 14.3 106 175-303 29-138 (142)
96 4ggc_A P55CDC, cell division c 40.5 1.8E+02 0.0063 25.3 35.5 139 28-202 35-179 (318)
97 1k8k_C P40, ARP2/3 complex 41 39.5 2.1E+02 0.0072 25.6 31.1 250 18-308 8-274 (372)
98 1yfq_A Cell cycle arrest prote 39.3 2E+02 0.0069 25.4 30.9 207 16-256 9-225 (342)
99 4asc_A Kelch repeat and BTB do 38.9 2.1E+02 0.0072 25.5 12.6 18 289-307 140-157 (315)
100 2uvk_A YJHT; unknown function, 37.9 95 0.0033 28.4 8.2 17 237-254 110-126 (357)
101 3sfz_A APAF-1, apoptotic pepti 37.7 4.3E+02 0.015 28.8 32.7 148 18-202 615-772 (1249)
102 1wp5_A Topoisomerase IV; broke 37.0 2.5E+02 0.0085 25.8 25.4 223 76-313 46-282 (323)
103 1erj_A Transcriptional repress 34.2 2.8E+02 0.0096 25.5 28.9 241 73-357 126-386 (393)
104 3ei3_B DNA damage-binding prot 33.2 2.8E+02 0.0094 25.1 25.6 192 71-308 74-282 (383)
105 1zvu_A Topoisomerase IV subuni 33.2 3.1E+02 0.011 28.4 11.2 122 130-261 511-638 (716)
106 4ery_A WD repeat-containing pr 32.8 2.5E+02 0.0086 24.5 35.3 270 18-358 23-310 (312)
107 1zi0_A DNA gyrase subunit A; b 31.9 2.9E+02 0.0099 25.0 25.8 216 24-257 49-278 (307)
108 1k8k_C P40, ARP2/3 complex 41 31.4 2.8E+02 0.0096 24.7 30.2 246 72-359 10-273 (372)
109 3i2n_A WD repeat-containing pr 30.1 2.9E+02 0.0098 24.4 30.8 199 18-255 65-290 (357)
110 3bws_A Protein LP49; two-domai 29.0 3.4E+02 0.012 24.9 22.4 26 125-150 213-241 (433)
111 2pm9_A Protein WEB1, protein t 28.7 3.3E+02 0.011 24.7 26.1 243 71-361 68-338 (416)
112 4gqb_B Methylosome protein 50; 28.5 3.4E+02 0.011 24.6 31.5 231 19-307 83-330 (344)
113 3v9f_A Two-component system se 28.3 5E+02 0.017 26.6 19.7 15 239-253 498-512 (781)
114 3q7x_A De novo designed beta-t 27.5 2.2E+02 0.0076 22.3 12.4 104 126-252 8-114 (132)
115 3q7x_A De novo designed beta-t 27.2 2.3E+02 0.0077 22.2 12.9 105 178-303 8-113 (132)
116 1l0q_A Surface layer protein; 27.1 3.5E+02 0.012 24.4 20.0 230 30-304 35-271 (391)
117 3e5z_A Putative gluconolactona 27.0 3.1E+02 0.011 23.8 12.9 15 291-305 221-235 (296)
118 3l6v_A GYRA, DNA gyrase subuni 26.8 4E+02 0.014 24.9 26.5 121 76-205 53-181 (370)
119 3l6v_A GYRA, DNA gyrase subuni 25.7 4.2E+02 0.014 24.8 25.0 132 18-157 45-185 (370)
120 2ymu_A WD-40 repeat protein; u 24.9 4.7E+02 0.016 25.2 34.9 264 18-356 303-576 (577)
121 1zvu_A Topoisomerase IV subuni 24.8 5.6E+02 0.019 26.4 11.5 124 234-366 511-639 (716)
122 3ei3_B DNA damage-binding prot 23.9 4E+02 0.014 24.0 31.3 194 17-256 72-282 (383)
123 1zvt_A Topoisomerase IV subuni 23.4 3.8E+02 0.013 23.5 16.0 157 136-313 5-168 (256)
124 3snv_A Symfoil-4T/permutation 23.4 2.8E+02 0.0096 22.0 10.9 102 130-251 15-116 (143)
125 4aow_A Guanine nucleotide-bind 22.4 3.9E+02 0.013 23.3 33.9 278 18-356 38-333 (340)
126 3f3f_A Nucleoporin SEH1; struc 22.2 3.8E+02 0.013 23.1 28.4 272 74-364 17-341 (351)
127 1nun_A Fibroblast growth facto 22.1 3E+02 0.01 21.9 8.7 66 176-252 14-80 (145)
128 3dwl_C Actin-related protein 2 22.0 4.3E+02 0.015 23.6 25.6 115 71-203 56-176 (377)
129 4e54_B DNA damage-binding prot 21.6 4.9E+02 0.017 24.2 25.4 191 18-254 119-325 (435)
130 2z2n_A Virginiamycin B lyase; 21.6 3.8E+02 0.013 22.8 25.0 263 30-356 18-291 (299)
131 2pm9_A Protein WEB1, protein t 21.0 4.6E+02 0.016 23.7 24.6 245 17-309 66-338 (416)
132 3vgz_A Uncharacterized protein 20.0 4.5E+02 0.015 23.1 25.3 22 335-356 267-289 (353)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.7e-84 Score=647.47 Aligned_cols=398 Identities=83% Similarity=1.410 Sum_probs=371.2
Q ss_pred ccCCCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCC
Q 013293 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (446)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g 91 (446)
++..+++.+|++|+||..|+++|+++|+||+||+|.+||||+++.+++..|+++..+.+.+|++|+||..|+++|+++.+
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg 88 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88 (406)
T ss_dssp ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence 55677889999999999999999999999999999999999999999999999999988899999999999999999834
Q ss_pred EEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeec
Q 013293 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (446)
Q Consensus 92 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~ 171 (446)
+||+||.|.+||||+++..+...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++.
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEE
Q 013293 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYS 251 (446)
Q Consensus 172 ~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~ 251 (446)
.+++.+|++|+||.+|+++|+++|+||+||.|.+||||++.......|.++..+...+|++|+||.+|+++|+++|+||+
T Consensus 169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~ 248 (406)
T 4d9s_A 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYT 248 (406)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEE
T ss_pred ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCC
Q 013293 252 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD 331 (446)
Q Consensus 252 ~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 331 (446)
||.|.+||||.++......|.++..+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.++..+...|+++.++..
T Consensus 249 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 328 (406)
T 4d9s_A 249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD 328 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGG
T ss_pred eeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCC
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999998888
Q ss_pred CcEEEEEecCCeEEEEECCCCEEEEeCCCCCCCCCCCCCCCCCcEEecccCCCCCceEEecccccCCCCCCccccCCc
Q 013293 332 QKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 409 (446)
Q Consensus 332 ~~i~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (446)
.+|++|+||.+|++||+++|+||+||.|.+||||+|++.++..|.+|+.|+.++....+++++...+..++.|++|+|
T Consensus 329 ~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~~~~~~~~~~~~~~~~~~w~~~~~ 406 (406)
T 4d9s_A 329 QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSSCCCCCBCTTSCTTC---------
T ss_pred CcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCceeeEEEecccccccCccccCcCC
Confidence 899999999999999999999999999999999999999999999999999999999999999988888999999875
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.6e-74 Score=572.12 Aligned_cols=368 Identities=30% Similarity=0.583 Sum_probs=330.4
Q ss_pred EEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCC
Q 013293 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102 (446)
Q Consensus 23 ~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~g 102 (446)
++..-..++++|++||+||+||+|.+||||.++.+....|+++..+...+|++|+||..|+++|+++ |+||+||.|.+|
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~-G~v~~wG~n~~G 83 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTAD-GKLYATGYGAGG 83 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETT-SCEEEEECCGGG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCC-CcEEEEECCCCC
Confidence 3445567889999999999999999999999988888999999888878899999999999999999 999999999999
Q ss_pred CcCCCCCCCceeeeeecccCCCC--EEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEE
Q 013293 103 RLGHGNSSDLFTPLPIKALHSLR--VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (446)
Q Consensus 103 qlG~~~~~~~~~p~~v~~l~~~~--I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ 180 (446)
|||.++......|.++..+.... +++|+||..|+++|+++|+||+||.|.+||||.++......|+++..+.+.+|++
T Consensus 84 qLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ 163 (389)
T 3kci_A 84 RLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVD 163 (389)
T ss_dssp TTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEE
Confidence 99999998889999998887664 4788999999999999999999999999999999998889999999999999999
Q ss_pred EEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC--ceEEEEeCCCCEEEeeCCCCC
Q 013293 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW--RHTISVSSSGRLYSYGWSKYG 258 (446)
Q Consensus 181 ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~~s~~l~~~G~vy~~G~n~~g 258 (446)
|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+...+|++|+||. .|+++|+++|+||+||.|.+|
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG 243 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Confidence 999999999999999999999999999999999989999999888889999999995 899999999999999999999
Q ss_pred CCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEE
Q 013293 259 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS 338 (446)
Q Consensus 259 qlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~ 338 (446)
|||.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|+++..+...+|++|+
T Consensus 244 qLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia 323 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA 323 (389)
T ss_dssp TTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEE
T ss_pred CCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEE
Confidence 99999988889999999998888999999999999999999999999999999999999888999999988888999999
Q ss_pred ecCCeEEEEECCCCEEEEeCCCCCCCCCCCCCCCCCcEEecccCCCCCceEEecc
Q 013293 339 CGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIAS 393 (446)
Q Consensus 339 ~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~ 393 (446)
||.+|++||+++|+||+||.|.+||||+|+..++..|.+|..|. +....+++.
T Consensus 324 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~--~~~v~~va~ 376 (389)
T 3kci_A 324 TGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQ--GKKVNRVAC 376 (389)
T ss_dssp ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--TSCCCEEEE
T ss_pred eccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccC--CCCEEEEEe
Confidence 99999999999999999999999999999999999999998763 444444443
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-71 Score=560.39 Aligned_cols=373 Identities=27% Similarity=0.417 Sum_probs=317.3
Q ss_pred ccCCCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCC-CCccCCeeecCCCCCcEEEEEecCCeeEEEEcCC
Q 013293 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA-EDRLSPTQLSALDGHEIVSVTCGADHTTAYSESC 90 (446)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~-~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~ 90 (446)
.++.++..++.+|++|..|+++|+++|+||+||.|.+||||+++. .....|.+++.+. .|++|+||..|+++|+++
T Consensus 17 ~~~~~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~- 93 (423)
T 3mvd_K 17 AEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKS- 93 (423)
T ss_dssp ------------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETT-
T ss_pred CCCCCccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCC-
Confidence 445677889999999999999999999999999999999999875 4567899988877 599999999999999999
Q ss_pred CEEEEEeCCCCCCcCCCCCCC--ceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeC--CCCCCcCCCCCCCccc
Q 013293 91 MQVYSWGWGDFGRLGHGNSSD--LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDSLV 166 (446)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~--~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~--n~~gqlg~~~~~~~~~ 166 (446)
|+||+||.|.+||||++.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+.......
T Consensus 94 G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~ 171 (423)
T 3mvd_K 94 GDIYSFGCNDEGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT 171 (423)
T ss_dssp SCEEEEECCSSSTTCSCCCSTTSSSSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEE
T ss_pred CeEEEeECCCCcCCCCCCcCCccccCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCce
Confidence 999999999999999998754 456766664 3479999999999999999999999998 9999999988776655
Q ss_pred ceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCC-----------CcccceeeeeecCceEEEEEe
Q 013293 167 PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN-----------DRLIPEKVATVDREKMVMVAC 235 (446)
Q Consensus 167 p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~-----------~~~~p~~v~~~~~~~i~~ia~ 235 (446)
|.++ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++......+|++|+|
T Consensus 172 p~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~ 249 (423)
T 3mvd_K 172 PIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWA 249 (423)
T ss_dssp EEES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEE
T ss_pred eeEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEE
Confidence 5554 567789999999999999999999999999999999997642 445788887777789999999
Q ss_pred cCceEEEE-eCCCCEEEeeCCCCCCCCCCCCCC--ceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCC
Q 013293 236 GWRHTISV-SSSGRLYSYGWSKYGQLGHGDFKD--HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 312 (446)
Q Consensus 236 G~~~s~~l-~~~G~vy~~G~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqL 312 (446)
|.+|++++ +++|+||+||.|.+||||.+.... ...|.++. + .+|++|+||.+|+++|+++|+||+||.|.+|||
T Consensus 250 g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~--~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqL 326 (423)
T 3mvd_K 250 TNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-L--KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRL 326 (423)
T ss_dssp ETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-C--CSEEEEEECSSEEEEEETTCCEEEEECCGGGTT
T ss_pred CCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-C--CCeEEEEcccCeEEEEeCCCcEEEEECCCCCCC
Confidence 99999999 699999999999999999965433 34565554 3 359999999999999999999999999999999
Q ss_pred cCCCCCC-ccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeCCCCCCCCCCCCCCCCCcEEecccCCCCCceEEe
Q 013293 313 GVGDNVD-HCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNI 391 (446)
Q Consensus 313 G~g~~~~-~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~ 391 (446)
|.++..+ ...|.+++.+.. +|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|.+|..+.+.+....++
T Consensus 327 G~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~v 405 (423)
T 3mvd_K 327 GLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLA 405 (423)
T ss_dssp CSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEEE
T ss_pred CCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEEEE
Confidence 9998766 357888876655 89999999999999999999999999999999999999999999998766677777776
Q ss_pred cccc
Q 013293 392 ASSK 395 (446)
Q Consensus 392 ~~~~ 395 (446)
+...
T Consensus 406 a~G~ 409 (423)
T 3mvd_K 406 SGGG 409 (423)
T ss_dssp EECS
T ss_pred EECC
Confidence 6543
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.6e-70 Score=551.05 Aligned_cols=363 Identities=32% Similarity=0.515 Sum_probs=314.7
Q ss_pred EEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCC-ccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCC
Q 013293 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF 101 (446)
Q Consensus 23 ~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~-~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~ 101 (446)
+.+.+..|+++|+++|.||+||.|.+||||+++... +..|+++..+ .+|++|+||..|+++|+++ |+||+||.|.+
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~-G~v~~wG~n~~ 88 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKS-GQVYSFGCNDE 88 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETT-SCEEEEECCTT
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCC-CCEEEEECCCC
Confidence 566678999999999999999999999999998654 6788888765 4899999999999999999 99999999999
Q ss_pred CCcCCCCCC--CceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeC--CCCCCcCCCCCCCc-ccceeecccCCc
Q 013293 102 GRLGHGNSS--DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDS-LVPQKLQAFEGV 176 (446)
Q Consensus 102 gqlG~~~~~--~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~--n~~gqlg~~~~~~~-~~p~~v~~~~~~ 176 (446)
||||++... ....|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+..... ..|.++ +...
T Consensus 89 GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~ 164 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDV 164 (413)
T ss_dssp STTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSS
T ss_pred CCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCC
Confidence 999998763 3556777743 3489999999999999999999999998 89999998876543 357776 4566
Q ss_pred cEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC-----------cccceeeeee-----cCceEEEEEecCceE
Q 013293 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-----------RLIPEKVATV-----DREKMVMVACGWRHT 240 (446)
Q Consensus 177 ~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~-----------~~~p~~v~~~-----~~~~i~~ia~G~~~s 240 (446)
+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999875421 2456555432 346899999999999
Q ss_pred EEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCC--CcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCC-CC
Q 013293 241 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVG-DN 317 (446)
Q Consensus 241 ~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g-~~ 317 (446)
++|+++|+||+||.|.+||||.++......|.++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+ +.
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~ 324 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA 324 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC
Confidence 999999999999999999999999888899999998876 679999999999999999999999999999999998 45
Q ss_pred CCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeCCCCCCCCCCCCCCCCCcEEecccCCCCCceEEeccc
Q 013293 318 VDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASS 394 (446)
Q Consensus 318 ~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~~ 394 (446)
.....|++++.+ .+|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|.+|....+.+....+++..
T Consensus 325 ~~~~~P~~v~~l--~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G 399 (413)
T 1a12_A 325 EEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSG 399 (413)
T ss_dssp CCEEEEEECCSS--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEEC
T ss_pred ccccCCEEeccc--CceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeC
Confidence 566778888765 389999999999999999999999999999999999998899999987644455555555543
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-69 Score=553.34 Aligned_cols=376 Identities=26% Similarity=0.419 Sum_probs=319.5
Q ss_pred CCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCC---CCccCCeeecCC--CCCcEEEEEecCCeeEEEEcC
Q 013293 15 AAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA---EDRLSPTQLSAL--DGHEIVSVTCGADHTTAYSES 89 (446)
Q Consensus 15 ~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~---~~~~~P~~v~~~--~~~~i~~i~~G~~~~~~l~~~ 89 (446)
..|...|....+...|+++++++|.||+||.|.+||||+++. .+...|++++.+ ...+|++|+||..|+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~ 85 (473)
T 3of7_A 6 HHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEE 85 (473)
T ss_dssp ---CTTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETT
T ss_pred chhhhhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecC
Confidence 456778888899999999999999999999999999999985 346778888776 456899999999999999999
Q ss_pred CCEEEEEeCCCCCCcCCCCCCC-----------------------ceeeeeecc--c----CCCCEEEEEcCCceEEEEe
Q 013293 90 CMQVYSWGWGDFGRLGHGNSSD-----------------------LFTPLPIKA--L----HSLRVKQIACGDSHCLAVT 140 (446)
Q Consensus 90 ~g~v~~wG~n~~gqlG~~~~~~-----------------------~~~p~~v~~--l----~~~~I~~I~~G~~h~~~lt 140 (446)
|+||+||.|.+||||++.... ...|.++.. + .+.+|++|+||..|+++|+
T Consensus 86 -G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt 164 (473)
T 3of7_A 86 -SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALF 164 (473)
T ss_dssp -CCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEE
T ss_pred -CeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEe
Confidence 999999999999999987654 456777764 4 3689999999999999999
Q ss_pred cCCcEEEEeC--CCCCCcCCCCC--CCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCC-
Q 013293 141 VEGEVQSWGR--NQNGQLGLGTT--EDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND- 215 (446)
Q Consensus 141 ~~G~vy~wG~--n~~gqlg~~~~--~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~- 215 (446)
++|+||+||. +..||||.... .....|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 165 ~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~ 244 (473)
T 3of7_A 165 SNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF 244 (473)
T ss_dssp TTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGG
T ss_pred CCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccc
Confidence 9999999998 67899998544 355688899888888999999999999999999999999999999999986543
Q ss_pred ---cccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCC----CceeeEEecccCCCcEEEEecC
Q 013293 216 ---RLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISGG 288 (446)
Q Consensus 216 ---~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~Ia~G 288 (446)
...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.+.+|++|+||
T Consensus 245 ~~~~~~p~~~~---~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G 321 (473)
T 3of7_A 245 RLKTLDPRPFG---LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAG 321 (473)
T ss_dssp TTTTCSCEECS---CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEEC
T ss_pred cccccCceecC---CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeC
Confidence 34455543 2689999999999999999999999999999999998754 3467999998888889999999
Q ss_pred CCeeEEEeCCCcEEEeeeCCCCCCcCCCCC------------CccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEE
Q 013293 289 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNV------------DHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSW 356 (446)
Q Consensus 289 ~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~------------~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~w 356 (446)
.+|+++|+++|+||+||.|.+||||.+... ....+.+..++...+|++|+||.+|++||+++|+||+|
T Consensus 322 ~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy~w 401 (473)
T 3of7_A 322 EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSW 401 (473)
T ss_dssp SSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEEEe
Confidence 999999999999999999999999986531 11223333344334899999999999999999999999
Q ss_pred eCCCCCCCCCCC-CCCCCCcEEecccCCCCCceEEeccc
Q 013293 357 GRGTNGQLGHGE-SSDRNSPKIIEPLSLDGSKGQNIASS 394 (446)
Q Consensus 357 G~n~~gqLG~g~-~~~~~~P~~i~~l~~~~~~~~~~~~~ 394 (446)
|.|.+||||+|+ ..++..|.+|..+...+.....++..
T Consensus 402 G~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG 440 (473)
T 3of7_A 402 GFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCG 440 (473)
T ss_dssp ECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEEC
T ss_pred eCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeC
Confidence 999999999999 78899999998776666666665544
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-68 Score=532.83 Aligned_cols=333 Identities=31% Similarity=0.563 Sum_probs=316.2
Q ss_pred CCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCc--EEEEEecCCeeEEEEcCCCEEEE
Q 013293 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHE--IVSVTCGADHTTAYSESCMQVYS 95 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~--i~~i~~G~~~~~~l~~~~g~v~~ 95 (446)
..+|++|+||..|+++|+++|+||+||.|.+||||.++.+....|.+++.+.+.. +++|+||..|+++|+++ |+||+
T Consensus 52 ~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~-G~v~~ 130 (389)
T 3kci_A 52 TLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE-GEVYS 130 (389)
T ss_dssp HTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETT-SCEEE
T ss_pred CCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCC-CCEEE
Confidence 4589999999999999999999999999999999999998899999999887654 47889999999999999 99999
Q ss_pred EeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCC
Q 013293 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEG 175 (446)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~ 175 (446)
||.|.+||||+++......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++..+.+
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeCC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEee
Q 013293 176 VSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYG 253 (446)
Q Consensus 176 ~~i~~ia~G~--~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G 253 (446)
.+|++|+||. .|+++|+++|+||+||.|.+||||.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG 290 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEe
Confidence 9999999995 89999999999999999999999999988889999998888889999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCc
Q 013293 254 WSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQK 333 (446)
Q Consensus 254 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~ 333 (446)
.|.+||||.++......|.++..+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.++..+...|++++.+...+
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~ 370 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKK 370 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSC
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCC
Confidence 99999999999888999999999988899999999999999999999999999999999999999999999998888889
Q ss_pred EEEEEecCCeEEEEECCC
Q 013293 334 VVQISCGWRHTLAVTERQ 351 (446)
Q Consensus 334 i~~i~~G~~h~~al~~~g 351 (446)
|++|+||.+|++||++++
T Consensus 371 v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 371 VNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp CCEEEEETTEEEEECC--
T ss_pred EEEEEecCCcEEEEecCC
Confidence 999999999999998764
No 7
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.4e-66 Score=519.18 Aligned_cols=346 Identities=35% Similarity=0.671 Sum_probs=318.0
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCC-cEEEEe
Q 013293 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG-EVQSWG 149 (446)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G-~vy~wG 149 (446)
.+|++|+||..|+++|+++ |+||+||.|.+||||+++..+...|.++..+.+.+|++|+||..|+++|+++| +||+||
T Consensus 16 ~~v~~ia~G~~hs~al~~~-g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSG-DIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEECSSEEEEEETT-TEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecCCCeEEEEEeC-CEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 4899999999999999999 99999999999999999999999999999998889999999999999999986 999999
Q ss_pred CCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCce
Q 013293 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREK 229 (446)
Q Consensus 150 ~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 229 (446)
.|.+||||.+.......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.+.+
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~ 174 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR 174 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCC
T ss_pred CCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCc
Confidence 99999999999988889999999999999999999999999999999999999999999999999889999998888889
Q ss_pred EEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCC
Q 013293 230 MVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 309 (446)
Q Consensus 230 i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~ 309 (446)
|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++..+...+|++|+||.+|+++|+++|+||+||.|.+
T Consensus 175 i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~ 254 (406)
T 4d9s_A 175 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254 (406)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTT
T ss_pred EEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCC
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred CCCcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeCCCCCCCCCCCCCCCCCcEEecccCCCCCceE
Q 013293 310 GQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQ 389 (446)
Q Consensus 310 GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~ 389 (446)
||||.++..+...|.++..+...+|++|+||.+|++||+++|+||+||.|.+||||+|+..+...|.++..+. .....
T Consensus 255 GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~ 332 (406)
T 4d9s_A 255 GQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--DQKVV 332 (406)
T ss_dssp STTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG--GCCEE
T ss_pred CCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC--CCcEE
Confidence 9999999998899999988888889999999999999999999999999999999999999888999987543 23445
Q ss_pred Eeccccc----CCCCCCccccCCcccccCCCCcc
Q 013293 390 NIASSKY----DPSSGKTWVSPSERYAVVPDDTV 419 (446)
Q Consensus 390 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 419 (446)
+++.... ...+++.|.++.+.+..+.....
T Consensus 333 ~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 366 (406)
T 4d9s_A 333 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES 366 (406)
T ss_dssp EEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC
T ss_pred EEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCC
Confidence 5544322 22357888888888777666553
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=9e-65 Score=509.35 Aligned_cols=332 Identities=27% Similarity=0.493 Sum_probs=293.1
Q ss_pred CCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCC--CccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCE
Q 013293 15 AAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAE--DRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQ 92 (446)
Q Consensus 15 ~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~--~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~ 92 (446)
...+.+|++|+||..|+++|+++|+||+||.|.+||||++... ....|.++.. . .+|++|+||..|+++|+++ |+
T Consensus 55 v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~-G~ 131 (413)
T 1a12_A 55 VSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDD-GR 131 (413)
T ss_dssp ECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETT-SC
T ss_pred ccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCC-Cc
Confidence 3446899999999999999999999999999999999998763 4667888843 3 3899999999999999999 99
Q ss_pred EEEEeC--CCCCCcCCCCCCCc-eeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCC-------
Q 013293 93 VYSWGW--GDFGRLGHGNSSDL-FTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE------- 162 (446)
Q Consensus 93 v~~wG~--n~~gqlG~~~~~~~-~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~------- 162 (446)
||+||. |.+||||.+..... ..|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 132 v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 209 (413)
T 1a12_A 132 VFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGR 209 (413)
T ss_dssp EEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGG
T ss_pred EEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccc
Confidence 999999 99999999876443 346665 556789999999999999999999999999999999987542
Q ss_pred ----Ccccceeeccc-----CCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecC--ceEE
Q 013293 163 ----DSLVPQKLQAF-----EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDR--EKMV 231 (446)
Q Consensus 163 ----~~~~p~~v~~~-----~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~ 231 (446)
....|+.+... ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.+ .+|+
T Consensus 210 ~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 210 QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp GGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred ccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 12466555442 346899999999999999999999999999999999999888888999887766 6799
Q ss_pred EEEecCceEEEEeCCCCEEEeeCCCCCCCCCC-CCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCC
Q 013293 232 MVACGWRHTISVSSSGRLYSYGWSKYGQLGHG-DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFG 310 (446)
Q Consensus 232 ~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~-~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~G 310 (446)
+|+||.+|+++|+++|+||+||.|.+||||.+ +......|.+++.+. +|++|+||.+|+++|+++|+||+||.|.+|
T Consensus 290 ~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~g 367 (413)
T 1a12_A 290 GFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNY 367 (413)
T ss_dssp EEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred EEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCC
Confidence 99999999999999999999999999999998 566778899998887 599999999999999999999999999999
Q ss_pred CCcCCCCCCccccEEEecC--CCCcEEEEEecCCeEEEEECCCCE
Q 013293 311 QVGVGDNVDHCSPVQVKFP--LDQKVVQISCGWRHTLAVTERQNV 353 (446)
Q Consensus 311 qLG~g~~~~~~~p~~v~~~--~~~~i~~i~~G~~h~~al~~~g~v 353 (446)
|||.++..+...|+++..+ ...+|++|+||.+|+++|+++|++
T Consensus 368 qLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 368 QLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp TTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 9999999888889998753 456899999999999999998864
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-63 Score=501.92 Aligned_cols=332 Identities=26% Similarity=0.412 Sum_probs=292.7
Q ss_pred ccCCCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCC--ccCCeeecCCCCCcEEEEEecCCeeEEEEcC
Q 013293 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYSES 89 (446)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~--~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~ 89 (446)
|...+...+|++|+||..|+++|+++|+||+||.|.+||||++...+ ...|.++.... +|++|+||..|+++|+++
T Consensus 68 p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~~hs~al~~~ 145 (423)
T 3mvd_K 68 LSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLLED 145 (423)
T ss_dssp EEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECSSEEEEEETT
T ss_pred CeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCC--CEEEEEcCcCeEEEEeCC
Confidence 44455667899999999999999999999999999999999988764 67788887443 799999999999999999
Q ss_pred CCEEEEEeC--CCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCC-----
Q 013293 90 CMQVYSWGW--GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE----- 162 (446)
Q Consensus 90 ~g~v~~wG~--n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~----- 162 (446)
|+||+||. |.+||||.+....... |+..+...+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 146 -G~v~~wG~~~n~~GqlG~~~~~~~~~--p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~ 222 (423)
T 3mvd_K 146 -GRVFAWGSFRDSHGNMGLTIDGNKRT--PIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGE 222 (423)
T ss_dssp -SCEEEEECEECSSSEEESBTTBCEEE--EEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSC
T ss_pred -CeEEEEeCCCCCCCCcCcCCCCCCce--eeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccc
Confidence 99999999 9999999987766544 4555667899999999999999999999999999999999997653
Q ss_pred ------CcccceeecccCCccEEEEEeCCCeEEEE-EcCCcEEEEeCCCCCCcCCCCCCCc--ccceeeeeecCceEEEE
Q 013293 163 ------DSLVPQKLQAFEGVSIKMVAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDR--LIPEKVATVDREKMVMV 233 (446)
Q Consensus 163 ------~~~~p~~v~~~~~~~i~~ia~G~~hs~~l-t~~G~vy~~G~n~~gqlG~~~~~~~--~~p~~v~~~~~~~i~~i 233 (446)
....|.++..+...+|++|+||.+|++++ +++|+||+||.|.+||||.+..... ..|.++. ..+|++|
T Consensus 223 ~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~i 299 (423)
T 3mvd_K 223 GRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHI 299 (423)
T ss_dssp STTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEE
T ss_pred cccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEE
Confidence 34578888877778999999999999999 6999999999999999999655443 3444443 4689999
Q ss_pred EecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCC-ceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCC
Q 013293 234 ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 312 (446)
Q Consensus 234 a~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqL 312 (446)
+||.+|+++|+++|+||+||.|.+||||.++..+ ...|.+++.+.. +|++|+||.+|+++|+++|+||+||.|.+|||
T Consensus 300 a~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqL 378 (423)
T 3mvd_K 300 AGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQL 378 (423)
T ss_dssp EECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCS
T ss_pred EcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCC
Confidence 9999999999999999999999999999998766 468999988876 79999999999999999999999999999999
Q ss_pred cCCCCCCccccEEEec--CCCCcEEEEEecCCeEEEEECCCC
Q 013293 313 GVGDNVDHCSPVQVKF--PLDQKVVQISCGWRHTLAVTERQN 352 (446)
Q Consensus 313 G~g~~~~~~~p~~v~~--~~~~~i~~i~~G~~h~~al~~~g~ 352 (446)
|.++..+...|++|.. +...+|++|+||.+|+++|+++++
T Consensus 379 G~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 379 GVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp SSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CCCCCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcccc
Confidence 9999999999999985 456789999999999999998874
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-62 Score=502.05 Aligned_cols=327 Identities=26% Similarity=0.483 Sum_probs=284.8
Q ss_pred CCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCC-----------------------ccCCeeecC--C---
Q 013293 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-----------------------RLSPTQLSA--L--- 68 (446)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~-----------------------~~~P~~v~~--~--- 68 (446)
...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.+++. +
T Consensus 65 ~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~ 144 (473)
T 3of7_A 65 DEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPL 144 (473)
T ss_dssp TTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHH
T ss_pred CCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcc
Confidence 456999999999999999999999999999999999987654 567888875 5
Q ss_pred -CCCcEEEEEecCCeeEEEEcCCCEEEEEeC--CCCCCcCCCCC--CCceeeeeecccCCCCEEEEEcCCceEEEEecCC
Q 013293 69 -DGHEIVSVTCGADHTTAYSESCMQVYSWGW--GDFGRLGHGNS--SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG 143 (446)
Q Consensus 69 -~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~--n~~gqlG~~~~--~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G 143 (446)
.+.+|++|+||..|+++|+++ |+||+||. |..||||.+.. .....|..+..+.+.+|++|+||..|+++|+++|
T Consensus 145 ~~~~~i~~va~G~~hs~alt~~-G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G 223 (473)
T 3of7_A 145 AEGHKVVQLAATDNMSCALFSN-GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG 223 (473)
T ss_dssp HTTCCEEEEEECSSEEEEEETT-SCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTS
T ss_pred cCCCcEEEEEccCCEEEEEeCC-CeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCC
Confidence 357899999999999999999 99999998 68899998554 4567888888888889999999999999999999
Q ss_pred cEEEEeCCCCCCcCCCCCCC----cccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCC----C
Q 013293 144 EVQSWGRNQNGQLGLGTTED----SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN----D 215 (446)
Q Consensus 144 ~vy~wG~n~~gqlg~~~~~~----~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~----~ 215 (446)
+||+||.|.+||||.+.... ...|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+... .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99999999999999987654 345655532 579999999999999999999999999999999998764 3
Q ss_pred cccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCC--------------CCceeeEEecccCCCc
Q 013293 216 RLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDF--------------KDHLVPCQLEALRESF 281 (446)
Q Consensus 216 ~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~--------------~~~~~p~~v~~~~~~~ 281 (446)
...|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++..+. +
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~ 378 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--K 378 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--C
T ss_pred eeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--c
Confidence 45688888777789999999999999999999999999999999998642 1234566666554 5
Q ss_pred EEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCC-CCCccccEEEecC--CCCcEEEEEecCCeEEEEEC
Q 013293 282 ISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD-NVDHCSPVQVKFP--LDQKVVQISCGWRHTLAVTE 349 (446)
Q Consensus 282 i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~-~~~~~~p~~v~~~--~~~~i~~i~~G~~h~~al~~ 349 (446)
|++|+||.+|++||+++|+||+||.|.+||||.++ ..+...|++|+.+ ...+|++|+||..|++++..
T Consensus 379 v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 379 FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred eEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 99999999999999999999999999999999998 7777889999743 45679999999999999975
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=6.6e-53 Score=400.38 Aligned_cols=257 Identities=25% Similarity=0.414 Sum_probs=216.9
Q ss_pred CCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEE
Q 013293 15 AAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVY 94 (446)
Q Consensus 15 ~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~ 94 (446)
.+...+|++|+||..|+++|+ +|+||+||.|.+||||.+ .. . ..+|++|+||..|+++|+ + |+||
T Consensus 20 ~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p--------~~--~--~~~i~~ia~G~~hs~~l~-~-G~v~ 84 (282)
T 3qhy_B 20 AEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP--------AA--T--QSGVDAIAAGNYHSLALK-D-GEVI 84 (282)
T ss_dssp GGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC--------GG--G--GSCCCEEEECSSEEEEEE-T-TEEE
T ss_pred ccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC--------cc--C--CCCEEEEEeCCCEEEEEE-C-CEEE
Confidence 334568999999999999998 999999999999999952 21 1 237999999999999995 7 9999
Q ss_pred EEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccC
Q 013293 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE 174 (446)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~ 174 (446)
+||.|.+||||. |.++ ..+|++|+||..|+++|+ +|+||+||.|.++||+... . .
T Consensus 85 ~wG~n~~Gqlg~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--------~----~ 139 (282)
T 3qhy_B 85 AWGGNEDGQTTV--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--------E----A 139 (282)
T ss_dssp EEECCTTSTTCC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--------G----G
T ss_pred EeeCCCCCCCCC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--------c----C
Confidence 999999999985 3333 247999999999999999 9999999999999997421 1 1
Q ss_pred CccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeC
Q 013293 175 GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGW 254 (446)
Q Consensus 175 ~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~ 254 (446)
..+|++|+||.+|+++|+ +|+||+||.|.+|||+. |.++ ..+|++|+||.+|+++| ++|+||+||.
T Consensus 140 ~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~~G~~hs~al-~~G~v~~wG~ 205 (282)
T 3qhy_B 140 QSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVAGGIFHSLAL-KDGKVIAWGD 205 (282)
T ss_dssp GSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEEECSSEEEEE-ETTEEEEEEC
T ss_pred CCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec----CCCeEEEEecCCEEEEE-ECCeEEEEEC
Confidence 236999999999999999 89999999999999984 2222 35799999999999999 8999999999
Q ss_pred CCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcE
Q 013293 255 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKV 334 (446)
Q Consensus 255 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i 334 (446)
|.+||||.+. +.+. +|++|+||.+|+++|+ +|+||+||.|.++|++.. ..|
T Consensus 206 n~~gqlg~p~----------~~~~--~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~----------------~~v 256 (282)
T 3qhy_B 206 NRYKQTTVPT----------EALS--GVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ----------------SGV 256 (282)
T ss_dssp CTTSTTCCCG----------GGGS--SCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS----------------SCE
T ss_pred CCCCCCCCCc----------ccCC--CceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC----------------CCc
Confidence 9999998542 1222 4999999999999999 999999999999998741 379
Q ss_pred EEEEecCCeEEEEECCCCEE
Q 013293 335 VQISCGWRHTLAVTERQNVF 354 (446)
Q Consensus 335 ~~i~~G~~h~~al~~~g~v~ 354 (446)
++|+||..|++||+++++.+
T Consensus 257 ~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 257 SSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp EEEEECSSCEEEEEC-----
T ss_pred EEEEECcCeEEEEecCCCCC
Confidence 99999999999999988765
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=3.2e-52 Score=395.64 Aligned_cols=251 Identities=27% Similarity=0.441 Sum_probs=211.1
Q ss_pred CeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeee
Q 013293 38 NIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLP 117 (446)
Q Consensus 38 g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~ 117 (446)
.+||+||+|...++. |.+++.+. +|++|+||..|+++|+ + |+||+||.|.+||||.+ .
T Consensus 2 ~~v~~WG~n~~~~~~---------~~p~~~~~--~i~~ia~G~~h~~~l~-~-G~v~~wG~n~~Gqlg~p--------~- 59 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA---------TVPAEAQS--GVDAIAGGYFHGLALK-G-GKVLGWGANLNGQLTMP--------A- 59 (282)
T ss_dssp CEEEEECSCCTTSTT---------CCCGGGSS--SCCEEEECSSEEEEEE-T-TEEEEEECCSSSTTSCC--------G-
T ss_pred eEEEEeCCCCCcCcc---------cCCccccC--CCcEEEeCCCeEEEEE-C-CEEEEEeCCCCCCCCCC--------c-
Confidence 369999999755443 22233333 7999999999999998 8 99999999999999942 2
Q ss_pred ecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcE
Q 013293 118 IKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGEL 197 (446)
Q Consensus 118 v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v 197 (446)
.. ..+|++|+||..|+++|+ ||+||+||.|.+||||. |.++. .+|++|+||.+|+++|+ +|+|
T Consensus 60 -~~--~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 60 -AT--QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp -GG--GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEEE-TTEE
T ss_pred -cC--CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEEe-CCeE
Confidence 11 237999999999999996 99999999999999985 33332 37999999999999999 9999
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEeccc
Q 013293 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL 277 (446)
Q Consensus 198 y~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~ 277 (446)
|+||.|.+|||+... ....+|++|+||.+|+++|+ +|+||+||.|.+||||.+ .++
T Consensus 123 ~~wG~n~~gqlg~~~------------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p--------~~~--- 178 (282)
T 3qhy_B 123 IAWGDDSDGQTTVPA------------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP--------AEA--- 178 (282)
T ss_dssp EEEECCTTSTTSCCG------------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC--------GGG---
T ss_pred EEecCCCCCcCCCCc------------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc--------eec---
Confidence 999999999998421 12357999999999999999 899999999999999842 211
Q ss_pred CCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEe
Q 013293 278 RESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWG 357 (446)
Q Consensus 278 ~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG 357 (446)
..+|++|+||.+|+++| ++|+||+||.|.+||||.+.. ...+|++|+||.+|+++|+ +|+||+||
T Consensus 179 -~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~------------~~~~v~~i~~G~~h~~al~-~g~v~~wG 243 (282)
T 3qhy_B 179 -QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASGEWYSLALK-NGKVIAWG 243 (282)
T ss_dssp -GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG------------GGSSCCEEEECSSCEEEEE-TTEEEEES
T ss_pred -CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc------------cCCCceEEEcCCCEEEEEE-CCEEEEec
Confidence 24599999999999999 899999999999999985321 1247999999999999999 99999999
Q ss_pred CCCCCCCCC
Q 013293 358 RGTNGQLGH 366 (446)
Q Consensus 358 ~n~~gqLG~ 366 (446)
.|.++|++.
T Consensus 244 ~n~~gq~~v 252 (282)
T 3qhy_B 244 SSRTAPSSV 252 (282)
T ss_dssp TTCCCCGGG
T ss_pred CCCCccccC
Confidence 999999975
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.36 E-value=0.13 Score=50.33 Aligned_cols=282 Identities=11% Similarity=0.104 Sum_probs=161.7
Q ss_pred CCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEe
Q 013293 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG 97 (446)
...|..++......+.-..||.|.+|-..... ....+.. ....|..++......+.-..| |.|..|-
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~-----------~~~~~~~-h~~~v~~l~~~~~~l~sg~~d-g~i~vwd 199 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-----------CKRILTG-HTGSVLCLQYDERVIITGSSD-STVRVWD 199 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSCC-----------EEEEECC-CSSCEEEEECCSSEEEEEETT-SCEEEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCCe-----------EEEEEcC-CCCcEEEEEECCCEEEEEcCC-CeEEEEE
Confidence 45678888877666667789999999543211 1111211 124688888866666666677 9999996
Q ss_pred CCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCcc
Q 013293 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVS 177 (446)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 177 (446)
....- ....+. .....|..++......+.-+.||.|..|-....... .......-....
T Consensus 200 ~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~ 258 (435)
T 1p22_A 200 VNTGE-----------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---------TLRRVLVGHRAA 258 (435)
T ss_dssp SSSCC-----------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC---------EEEEEECCCSSC
T ss_pred CCCCc-----------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc---------eeeeEecCCCCc
Confidence 53311 011111 124468888888888888899999999975432110 011111112336
Q ss_pred EEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCC
Q 013293 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKY 257 (446)
Q Consensus 178 i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~ 257 (446)
|..++....+.+.-..||.|..|-.... .+..........|..++......+.-..+|.|..|-....
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTC------------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcC------------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 7777777777788888999999964321 0111111123456667766677777788999999964321
Q ss_pred CCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEE
Q 013293 258 GQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQI 337 (446)
Q Consensus 258 gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i 337 (446)
+ ....+.. ....|..++....+.+.-..||.|..|-......... .....+..........|..+
T Consensus 327 -~----------~~~~~~~-h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 327 -A----------CLRVLEG-HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA---PAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp -C----------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTS---CTTTTEEEEECCCSSCCCCE
T ss_pred -C----------EEEEEeC-CcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccc---cccchheeeccCCCCCeEEE
Confidence 1 1111221 2234778888666777778899999997543211100 00001122212223456666
Q ss_pred EecCCeEEEEECCCCEEEEeCCC
Q 013293 338 SCGWRHTLAVTERQNVFSWGRGT 360 (446)
Q Consensus 338 ~~G~~h~~al~~~g~v~~wG~n~ 360 (446)
+......+.-..||.|..|--..
T Consensus 392 ~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 392 QFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EECSSCEEECCSSSEEEEEC---
T ss_pred EeCCCEEEEEeCCCEEEEEECCC
Confidence 66555555566789999996543
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.58 E-value=0.61 Score=45.41 Aligned_cols=265 Identities=11% Similarity=0.059 Sum_probs=154.8
Q ss_pred EEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCC
Q 013293 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGD 100 (446)
Q Consensus 21 i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~ 100 (446)
+..++.-+...+.-..||.|.+|-......+ ..+.. ....|..++......+.-..| |.|+.|-...
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~-h~~~v~~~~~~~~~l~s~~~d-g~i~vwd~~~ 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------RTLVG-HTGGVWSSQMRDNIIISGSTD-RTLKVWNAET 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EECCC-CSSCEEEEEEETTEEEEEETT-SCEEEEETTT
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE-----------EEEcC-CCCCEEEEEecCCEEEEEeCC-CeEEEEECCc
Confidence 4455555555555567888888865432110 11111 123577777766666667777 9999996432
Q ss_pred CCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEE
Q 013293 101 FGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (446)
Q Consensus 101 ~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ 180 (446)
.. ....+. .....|..++......+.-+.||.|+.|-...... ...+. .....|..
T Consensus 189 ~~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~-~~~~~v~~ 244 (445)
T 2ovr_B 189 GE-----------CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM-GHVAAVRC 244 (445)
T ss_dssp TE-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE-CCSSCEEE
T ss_pred Cc-----------EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc-CCcccEEE
Confidence 10 111111 12346788887778888888999999997543210 01111 12235777
Q ss_pred EEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee--cCceEEEEEecCceEEEEeCCCCEEEeeCCCCC
Q 013293 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV--DREKMVMVACGWRHTISVSSSGRLYSYGWSKYG 258 (446)
Q Consensus 181 ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~g 258 (446)
++......+.-..||.|+.|-... ...+..+ ....|..++....+.+.-..+|.|..|-.....
T Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp EEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC
T ss_pred EEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC
Confidence 777677777778899999995321 1112212 234577777766777777889999999643211
Q ss_pred CCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEec--CCCCcEEE
Q 013293 259 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF--PLDQKVVQ 336 (446)
Q Consensus 259 qlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~--~~~~~i~~ 336 (446)
....+.. ....+..++......+.-..||.|..|-...... ...+.. .....|..
T Consensus 311 -----------~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~ 367 (445)
T 2ovr_B 311 -----------CIHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC-----------LQTLQGPNKHQSAVTC 367 (445)
T ss_dssp -----------EEEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEECSTTSCSSCEEE
T ss_pred -----------EEEEEcC-CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-----------EEEEccCCCCCCCEEE
Confidence 0111111 1223666666566666677899999997543111 111111 12345777
Q ss_pred EEecCCeEEEEECCCCEEEEeCC
Q 013293 337 ISCGWRHTLAVTERQNVFSWGRG 359 (446)
Q Consensus 337 i~~G~~h~~al~~~g~v~~wG~n 359 (446)
++......++-..||.|..|--.
T Consensus 368 ~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 368 LQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEECSSEEEEEETTSEEEEEETT
T ss_pred EEECCCEEEEEeCCCeEEEEECC
Confidence 77777777777889999999643
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.44 E-value=0.74 Score=44.73 Aligned_cols=229 Identities=11% Similarity=0.100 Sum_probs=138.6
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCC
Q 013293 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (446)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n 151 (446)
.|..++....+.+.-..+ |.|..|-.... + ....+. .....|..++......+.-+.||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~d-g~i~iwd~~~~-~----------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRD-NTIKIWDKNTL-E----------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESS-SCEEEEESSSC-C----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCC-CeEEEEeCCCC-e----------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 477777777777777777 99999954321 0 111111 1234688888867777777889999999754
Q ss_pred CCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEE
Q 013293 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMV 231 (446)
Q Consensus 152 ~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~ 231 (446)
.... ...+. .....|..++......+.-..||.|..|-...... .............|.
T Consensus 202 ~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 202 TGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD---------ITLRRVLVGHRAAVN 260 (435)
T ss_dssp SCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC---------CEEEEEECCCSSCEE
T ss_pred CCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC---------ceeeeEecCCCCcEE
Confidence 3210 11111 12336788887777888888999999995432111 111111122234677
Q ss_pred EEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCC
Q 013293 232 MVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 311 (446)
Q Consensus 232 ~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~Gq 311 (446)
.++....+.+.-..+|.|..|-..... ....+.. ....|..++......+.-..||.|..|-....
T Consensus 261 ~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~-- 326 (435)
T 1p22_A 261 VVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLWDIECG-- 326 (435)
T ss_dssp EEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEEC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTC--
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC--
Confidence 777767777777889999999643211 1111111 12336667666667777788999999975431
Q ss_pred CcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeC
Q 013293 312 VGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGR 358 (446)
Q Consensus 312 LG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~ 358 (446)
.+..........|..++......+.-..||.|..|--
T Consensus 327 ----------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 327 ----------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ----------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred ----------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 1122111223457777776666667778999999954
No 16
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.03 E-value=0.01 Score=52.72 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=64.5
Q ss_pred ccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCC
Q 013293 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWS 255 (446)
Q Consensus 176 ~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n 255 (446)
..|..|+....|.+++--+++++.||+++.||+-.... ..+..++.+|.++++-+..-..+-.||+.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 35778888899999999999999999999999864321 13578899999999999999999999986
Q ss_pred CCCCC---CCCCCCCceeeE
Q 013293 256 KYGQL---GHGDFKDHLVPC 272 (446)
Q Consensus 256 ~~gql---G~~~~~~~~~p~ 272 (446)
....| |.+....+.+|+
T Consensus 376 PDNSLLwnGr~t~~~~~~~~ 395 (400)
T 4gbf_A 376 PDNSLLWNGRGTRVKHIEPT 395 (400)
T ss_dssp TTSTTCCTTCCSBCCCCCCC
T ss_pred CCcceeecCccceeeeccCC
Confidence 55444 444444444444
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.74 E-value=1.7 Score=45.61 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=12.0
Q ss_pred CeeEEEeCCCcEEEeeeC
Q 013293 290 RHTMAVTSDGKLYGWGWN 307 (446)
Q Consensus 290 ~h~~~lt~~G~v~~wG~n 307 (446)
.|++++..+|+||++|-.
T Consensus 657 gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SCEEECC---CEEEECCE
T ss_pred eeeEEEeCCCEEEEEeCC
Confidence 488888888899999853
No 18
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.74 E-value=0.022 Score=50.70 Aligned_cols=68 Identities=28% Similarity=0.465 Sum_probs=56.9
Q ss_pred CcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeCC
Q 013293 280 SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRG 359 (446)
Q Consensus 280 ~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~n 359 (446)
..|..|+.-..|..++--+++++.+|++..|||-.... .....++.+|.++++-+..-..|..||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 34788999999999999999999999999999954322 13567899999999999999999999975
Q ss_pred C
Q 013293 360 T 360 (446)
Q Consensus 360 ~ 360 (446)
-
T Consensus 376 P 376 (400)
T 4gbf_A 376 P 376 (400)
T ss_dssp T
T ss_pred C
Confidence 4
No 19
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.42 E-value=1.7 Score=45.49 Aligned_cols=150 Identities=11% Similarity=0.008 Sum_probs=70.2
Q ss_pred CceEEEEec-CCcEEEEeCCCCCCcCCCCCC----CcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCC
Q 013293 133 DSHCLAVTV-EGEVQSWGRNQNGQLGLGTTE----DSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGN 207 (446)
Q Consensus 133 ~~h~~~lt~-~G~vy~wG~n~~gqlg~~~~~----~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gq 207 (446)
..|++++.. +|+||.+|-.....--..+.. .......+..++ ..-..|++++..+++||++|-...
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p-------~~R~~h~~~~~~~~~iyv~GG~~~-- 511 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS-------HTRFRHSACSLPDGNVLILGGVTE-- 511 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS-------BCCBSCEEEECTTSCEEEECCBCS--
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC-------CCcccceEEEEcCCEEEEECCCCC--
Confidence 368877776 899999984322110001100 001112221111 123467777766999999983211
Q ss_pred cCCCCCCCcccceeeeeecCceEEEEEe-------cCceE-EEEeCC-CCEEEeeCCCCCCCCCCCCCCceeeEEecccC
Q 013293 208 LGLGDRNDRLIPEKVATVDREKMVMVAC-------GWRHT-ISVSSS-GRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR 278 (446)
Q Consensus 208 lG~~~~~~~~~p~~v~~~~~~~i~~ia~-------G~~~s-~~l~~~-G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~ 278 (446)
.. -..+-.+.......+.. -..|+ +++..+ +++|.+|-.... +.....+.... .+.
T Consensus 512 --~~-------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~--~~~~~~~v~~y----d~~ 576 (695)
T 2zwa_A 512 --GP-------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD--QTTVSDKAIIF----KYD 576 (695)
T ss_dssp --SC-------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTT--SSCBCCEEEEE----EEC
T ss_pred --CC-------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCC--CCeeeCcEEEE----Ecc
Confidence 11 11111222233333332 23465 555655 899999843211 00000110000 000
Q ss_pred CCc------EEEE-----ecCCCeeEEEeCCCcEEEeee
Q 013293 279 ESF------ISQI-----SGGWRHTMAVTSDGKLYGWGW 306 (446)
Q Consensus 279 ~~~------i~~I-----a~G~~h~~~lt~~G~v~~wG~ 306 (446)
... ...+ ..-..|++++..+++||++|-
T Consensus 577 ~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 577 AENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp TTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECC
T ss_pred CCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECC
Confidence 111 1222 233568888877799999984
No 20
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.31 E-value=2.9 Score=37.68 Aligned_cols=271 Identities=14% Similarity=0.057 Sum_probs=138.9
Q ss_pred CCCCCEEEEEecCC-ceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCE
Q 013293 16 APFRPVLLISAGAS-HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQ 92 (446)
Q Consensus 16 ~~~~~i~~i~~G~~-~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~g~ 92 (446)
.-...|..++.-.. ..+.-..||.|..|-.... .....+... ...|..++.. ..+.+.-..+ |.
T Consensus 16 ~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-g~ 82 (313)
T 3odt_A 16 GHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYTG-QGFLNSVCYDSEKELLLFGGKD-TM 82 (313)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-----------EEEEEEEEC-SSCEEEEEEETTTTEEEEEETT-SC
T ss_pred CCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeecC-CccEEEEEECCCCCEEEEecCC-Ce
Confidence 34567777776222 2333347899999964321 111112111 2345555443 3444445556 88
Q ss_pred EEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecc
Q 013293 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (446)
Q Consensus 93 v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~ 172 (446)
|..|-...... ..+..........|..++......+..+.+|.|+.|-... ....+.
T Consensus 83 i~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~-------------~~~~~~- 139 (313)
T 3odt_A 83 INGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGS-------------LVYNLQ- 139 (313)
T ss_dssp EEEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTE-------------EEEEEE-
T ss_pred EEEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCc-------------EEEecc-
Confidence 88886433210 0111111112346788887777788888999999995110 011111
Q ss_pred cCCccEEEEEe---CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC-ceEEEEeCCCC
Q 013293 173 FEGVSIKMVAA---GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW-RHTISVSSSGR 248 (446)
Q Consensus 173 ~~~~~i~~ia~---G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~-~~s~~l~~~G~ 248 (446)
.....+..+.. .....+....+|.|+.|-.. .....+.......+..++... ...++-..+|.
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~ 206 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL 206 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSE
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCe
Confidence 11224544443 56667777889999999411 001111111223444444332 23556678888
Q ss_pred EEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCC-eeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEe
Q 013293 249 LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVK 327 (446)
Q Consensus 249 vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~-h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 327 (446)
|+.|-..... ....+. .....|..++.... ..++...+|.|+.|-.... .+....
T Consensus 207 i~i~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~~~~~~ 262 (313)
T 3odt_A 207 IKLVDMHTGD-----------VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG------------SLKQVI 262 (313)
T ss_dssp EEEEETTTCC-----------EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC------------CEEEEE
T ss_pred EEEEECCchh-----------hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC------------ceeEEE
Confidence 9998643211 111111 12234666665433 4556678899999864331 122221
Q ss_pred cCCCCcEEEEEecCC-eEEEEECCCCEEEEeCC
Q 013293 328 FPLDQKVVQISCGWR-HTLAVTERQNVFSWGRG 359 (446)
Q Consensus 328 ~~~~~~i~~i~~G~~-h~~al~~~g~v~~wG~n 359 (446)
......|..++...+ ..++-..||.|+.|=-.
T Consensus 263 ~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 263 TLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ECSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred eccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 122345666665433 35556789999999653
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.15 E-value=4.4 Score=39.14 Aligned_cols=231 Identities=10% Similarity=0.043 Sum_probs=136.5
Q ss_pred CCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEE
Q 013293 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (446)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~w 96 (446)
....|..++.-....+.-..||.|..|-..... ....+.. ....|..+.......+....+ |.|+.|
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~l~s~s~d-g~i~~w 224 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE-----------CIHTLYG-HTSTVRCMHLHEKRVVSGSRD-ATLRVW 224 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEEETTEEEEEETT-SEEEEE
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcCc-----------EEEEECC-CCCcEEEEEecCCEEEEEeCC-CEEEEE
Confidence 445677777766655556678899988543211 0111111 123577777777777777777 999999
Q ss_pred eCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCc
Q 013293 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (446)
Q Consensus 97 G~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~ 176 (446)
-..... +..........|..++......+.-+.||.|+.|-..... ....+. ....
T Consensus 225 d~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~-~~~~ 280 (445)
T 2ovr_B 225 DIETGQ------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----------CLHTLQ-GHTN 280 (445)
T ss_dssp ESSSCC------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----------EEEEEC-CCSS
T ss_pred ECCCCc------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-----------EeEEec-CCCC
Confidence 643211 1111111234677777777777788889999999643210 011111 1123
Q ss_pred cEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCC
Q 013293 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSK 256 (446)
Q Consensus 177 ~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~ 256 (446)
.|..+.....+.+.-..||.|..|-..... +..........+..++......+.-..+|.|..|-...
T Consensus 281 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGN------------CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTCC------------EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred ceEEEEECCCEEEEEeCCCeEEEEECCCCC------------EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 577777777777778889999999643211 01111111234556666666777778899999996432
Q ss_pred CCCCCCCCCCCceeeEEecc--cCCCcEEEEecCCCeeEEEeCCCcEEEeeeC
Q 013293 257 YGQLGHGDFKDHLVPCQLEA--LRESFISQISGGWRHTMAVTSDGKLYGWGWN 307 (446)
Q Consensus 257 ~gqlG~~~~~~~~~p~~v~~--~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n 307 (446)
. .....+.. .....|..++....+.+.-..||.|..|-..
T Consensus 349 ~-----------~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 349 G-----------QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp C-----------CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred C-----------cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 1 11112221 1223477787777777777889999999754
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.51 E-value=4.3 Score=36.89 Aligned_cols=276 Identities=9% Similarity=0.002 Sum_probs=136.6
Q ss_pred EecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCe-eEEEEcCCCEEEEEeCCCCCC
Q 013293 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADH-TTAYSESCMQVYSWGWGDFGR 103 (446)
Q Consensus 25 ~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~-~~~l~~~~g~v~~wG~n~~gq 103 (446)
..+.-..+++..||+.++++......+...... ...+..... -...|..++...+. .++...+ |.|..|-......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~d-g~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTLN-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS-EEEEEEEEC-CSSCCCEEEECSSSSEEEEECB-SEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCC-ccccceecc-CCCceEEEEEecCCcEEEEcCC-CeEEEEECCCCCc
Confidence 345567788899999998887655433322111 111111111 12346666654433 3333345 9999997543221
Q ss_pred cCCCCCCCceeeeeec-ccCCCCEEEEEcCC--ceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEE
Q 013293 104 LGHGNSSDLFTPLPIK-ALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (446)
Q Consensus 104 lG~~~~~~~~~p~~v~-~l~~~~I~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ 180 (446)
. .. ...+. ......|..++... ...+....+|.|+.|-..... .............|..
T Consensus 85 ~------~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 85 K------SP--VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAPACYA 146 (337)
T ss_dssp C------SC--SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEEE
T ss_pred e------ee--eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCCceEE
Confidence 1 00 01111 01234566666543 345556778999999654311 0011111112234666
Q ss_pred EEeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC--ceEEEEeCCCCEEEeeCCC
Q 013293 181 VAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW--RHTISVSSSGRLYSYGWSK 256 (446)
Q Consensus 181 ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~~s~~l~~~G~vy~~G~n~ 256 (446)
++.. ..+.+.-..+|.|+.|-.... .+..........|..++... ...+....+|.|+.|-...
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 214 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHNQ------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCC------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC
Confidence 5543 345566678899999964321 11111111234566665533 3455556788898885432
Q ss_pred CCCCCCCCCCCceeeEEecccCCCcEEEEec--CCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcE
Q 013293 257 YGQLGHGDFKDHLVPCQLEALRESFISQISG--GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKV 334 (446)
Q Consensus 257 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~--G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i 334 (446)
. .....+.. ...+..++. .....++-..+|.|+.|-..... ...+ ......|
T Consensus 215 ~-----------~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~-~~~~~~v 268 (337)
T 1gxr_A 215 G-----------RQLQQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQL-HLHESCV 268 (337)
T ss_dssp T-----------EEEEEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEE-CCCSSCE
T ss_pred C-----------ceEeeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEE-cCCccce
Confidence 1 11111111 122555443 33444555678888888644311 1111 1223456
Q ss_pred EEEEec--CCeEEEEECCCCEEEEeCC
Q 013293 335 VQISCG--WRHTLAVTERQNVFSWGRG 359 (446)
Q Consensus 335 ~~i~~G--~~h~~al~~~g~v~~wG~n 359 (446)
..++.. ....++...+|.|+.|-..
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEECCCCCEEEEecCCCcEEEEECC
Confidence 666554 3344555678899999643
No 23
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=93.36 E-value=5.6 Score=37.80 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=135.1
Q ss_pred EEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecC--CeeEEEEcCCCEEEEEeCCCC
Q 013293 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVYSWGWGDF 101 (446)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~--~~~~~l~~~~g~v~~wG~n~~ 101 (446)
++....+.++...||.|+.|-..... ....+.......|..++... .+.++-..+ |.|..|-....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~ 166 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGN-GLVDIYDVESQ 166 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCC-CeEEEEECcCC
Confidence 55556777888899999999754321 11112221234577776543 344444556 99999964321
Q ss_pred CCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEE
Q 013293 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (446)
Q Consensus 102 gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i 181 (446)
. ....+. .....|..++......+....+|.|+.|-...... ....+.. ....|..+
T Consensus 167 ~-----------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~-~~~~v~~~ 223 (401)
T 4aez_A 167 T-----------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQG-HSSEVCGL 223 (401)
T ss_dssp C-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC-CSSCEEEE
T ss_pred e-----------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcC-CCCCeeEE
Confidence 1 111111 23446888888777778888999999997643211 0111111 12356666
Q ss_pred EeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC--ceEEEEe---CCCCEEEeeC
Q 013293 182 AAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW--RHTISVS---SSGRLYSYGW 254 (446)
Q Consensus 182 a~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~~s~~l~---~~G~vy~~G~ 254 (446)
+.. ..+.+.-..||.|+.|-.... .+..........|..++... .+.++.. .+|.|+.|-.
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSS------------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCS------------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCC------------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 553 345555677899999964321 11111111123344444432 2333332 4788888854
Q ss_pred CCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCee--EEEe--CCCcEEEeeeCCCCCCcCCCCCCccccEEEecCC
Q 013293 255 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHT--MAVT--SDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL 330 (446)
Q Consensus 255 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~--~~lt--~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 330 (446)
.... ....+.. ...|..++...... ++.. .+|.|+.|-..... ..+.......
T Consensus 292 ~~~~-----------~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~----------~~~~~~~~~h 348 (401)
T 4aez_A 292 ATGA-----------RVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG----------LTKQVDIPAH 348 (401)
T ss_dssp TTCC-----------EEEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE----------EEEEEEEECC
T ss_pred CCCC-----------EEEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc----------ceeEEEecCC
Confidence 2210 1111111 22366665443322 2222 68889988754310 0111101112
Q ss_pred CCcEEEEEec--CCeEEEEECCCCEEEEeCC
Q 013293 331 DQKVVQISCG--WRHTLAVTERQNVFSWGRG 359 (446)
Q Consensus 331 ~~~i~~i~~G--~~h~~al~~~g~v~~wG~n 359 (446)
...|..++.. ..+.+....||.|..|=-.
T Consensus 349 ~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 349 DTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp SSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 2345554443 3334445578888888543
No 24
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.13 E-value=5 Score=36.61 Aligned_cols=218 Identities=12% Similarity=0.036 Sum_probs=118.4
Q ss_pred CCCCEEEEEc--CCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC---CCeEEEEEcCCc
Q 013293 122 HSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGE 196 (446)
Q Consensus 122 ~~~~I~~I~~--G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G---~~hs~~lt~~G~ 196 (446)
.+..+..+.. ...+.+++|++|++|..-..+...... ..+ .-++++|+.+.+- ....+++|++|.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~---------~~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK---------VSL-KSREEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEE---------CCC-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcc---------ccc-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 3455655543 345689999999999765322110000 002 2246788888762 257889999999
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEe--cCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEe
Q 013293 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 274 (446)
Q Consensus 197 vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v 274 (446)
+.-.-...+-+-. .-...+..-++..++.+.. +..+.++++++|++|.+-..+.-.+|....... .+
T Consensus 92 iKr~~l~~~~~~~-------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i 160 (276)
T 3no0_A 92 VKKIPLAEFEYKA-------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GI 160 (276)
T ss_dssp EEEEEGGGTTTCS-------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CC
T ss_pred EEEEEHHHhhhhc-------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EE
Confidence 8877544432100 0011111122344444432 455789999999999997665554443321111 12
Q ss_pred cccCCCcEEEEec--CCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEE--ecCCeEEEEECC
Q 013293 275 EALRESFISQISG--GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS--CGWRHTLAVTER 350 (446)
Q Consensus 275 ~~~~~~~i~~Ia~--G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~--~G~~h~~al~~~ 350 (446)
..-.+.+|..+.. ...+.+++|++|.+.-.=...+-..+.+..- +.. +..+..++.+. .+....++++++
T Consensus 161 ~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG-----v~~-i~~~~~lv~~~~~~~~~~i~~~t~~ 234 (276)
T 3no0_A 161 KLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG-----TEV-SGTKDTLVDLIPIKEEVELLITTKN 234 (276)
T ss_dssp CCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC-----EEC-CCSSSCEEEEEEESSEEEEEEEETT
T ss_pred ccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc-----eEE-EcCCCcEEEEEEeCCCCEEEEEcCC
Confidence 2223345665443 2346778889998777655544332221110 000 02223444432 345678889999
Q ss_pred CCEEE--EeCCCCCCCCC
Q 013293 351 QNVFS--WGRGTNGQLGH 366 (446)
Q Consensus 351 g~v~~--wG~n~~gqLG~ 366 (446)
|.+.. +--++--.+|.
T Consensus 235 G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 235 GKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp SCEEEEEEEGGGSCBCCT
T ss_pred CeEEEeeeCHHHCCCcCC
Confidence 99988 76555555543
No 25
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.57 E-value=11 Score=38.93 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEE----ecCCeE-EEEECCCCEEEEeCCCCC
Q 013293 289 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS----CGWRHT-LAVTERQNVFSWGRGTNG 362 (446)
Q Consensus 289 ~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~----~G~~h~-~al~~~g~v~~wG~n~~g 362 (446)
..|++++..+|+||+.|-...++. .........+...... ..+...+. .-.+|+ +++..+|+||..|.+.++
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~-t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPE-QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGG-GTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCC-CCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 357777778999999996544321 1111111122222111 11222221 123465 455689999999987664
No 26
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.03 E-value=9.1 Score=36.92 Aligned_cols=278 Identities=10% Similarity=0.103 Sum_probs=144.9
Q ss_pred EEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC-eeEEEEcCCCEEEEEeCC
Q 013293 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-HTTAYSESCMQVYSWGWG 99 (446)
Q Consensus 21 i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~-~~~~l~~~~g~v~~wG~n 99 (446)
+..++......+.-..||.|..|-..... ....+.. -...|..++.... ..+.-..| |.|..|-..
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~-----------~~~~~~~-h~~~V~~l~~~~~~~l~s~s~d-g~i~vwd~~ 191 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKK-----------FLLQLSG-HDGGVWALKYAHGGILVSGSTD-RTVRVWDIK 191 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECSTTEEEEEETT-SCEEEEETT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCc-----------EEEEEeC-CCcCEEEEEEcCCCEEEEEeCC-CCEEEEECC
Confidence 45566655555555688899999643211 0111111 1235777776544 44444556 999999643
Q ss_pred CCCCcCCCCCCCceeeeeecccCCCCEEEEEcC----CceEEEEecCCcEEEEeCCCCCCcCCCCCCC---------ccc
Q 013293 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTED---------SLV 166 (446)
Q Consensus 100 ~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G----~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~---------~~~ 166 (446)
... ....+. .....|..++.. ....+.-+.||.|..|-.............. ...
T Consensus 192 ~~~-----------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 192 KGC-----------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTE-----------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCc-----------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 210 111111 123356655543 2556677889999999865432221100000 000
Q ss_pred ceeeccc--CCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC--ceEEE
Q 013293 167 PQKLQAF--EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW--RHTIS 242 (446)
Q Consensus 167 p~~v~~~--~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~~s~~ 242 (446)
+..+..+ ....|..+.......+.-..||.|+.|-.... .+..........|..++... ...+.
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM------------KCLYILSGHTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC------------cEEEEecCCCCCEEEEEEcCCCCEEEE
Confidence 0011111 12357777777777888888999999964321 11111111223455555443 35556
Q ss_pred EeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccc
Q 013293 243 VSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCS 322 (446)
Q Consensus 243 l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~ 322 (446)
-..+|.|+.|-... + .....+.. ....|..++....+.+.-..||.|..|-..... .
T Consensus 328 g~~dg~i~vwd~~~-~----------~~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-----------~ 384 (464)
T 3v7d_B 328 ASMDTTIRIWDLEN-G----------ELMYTLQG-HTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-----------R 384 (464)
T ss_dssp EETTSCEEEEETTT-T----------EEEEEECC-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-----------E
T ss_pred EeCCCcEEEEECCC-C----------cEEEEEeC-CCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc-----------e
Confidence 67788888885322 1 11111221 223477777777777777899999999765421 1
Q ss_pred cEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeCC
Q 013293 323 PVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRG 359 (446)
Q Consensus 323 p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~n 359 (446)
...........+..+..... .++...+|.|+.|=-.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 385 KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLR 420 (464)
T ss_dssp EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETT
T ss_pred eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECC
Confidence 12222222334555555444 3444458899999643
No 27
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=90.29 E-value=11 Score=34.57 Aligned_cols=234 Identities=13% Similarity=0.088 Sum_probs=120.1
Q ss_pred CcEEEEEecCC----eeEEE-EcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCC
Q 013293 71 HEIVSVTCGAD----HTTAY-SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEG 143 (446)
Q Consensus 71 ~~i~~i~~G~~----~~~~l-~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G 143 (446)
..|..++.... ..++. ..+ |.|..|-....++ .....+.. ....|..++.. ..+.+..+.||
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETT-SEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCC-CcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 56888888765 33443 445 9999997543221 11111221 23467777654 34566677899
Q ss_pred cEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEe--CCC--eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccc
Q 013293 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA--GAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (446)
Q Consensus 144 ~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~--hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p 219 (446)
.|..|-..... ...... ....|..++. ..+ ..+.-..||.|+.|-.... + +
T Consensus 109 ~v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~-----------~ 163 (368)
T 3mmy_A 109 TAKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-N-----------P 163 (368)
T ss_dssp EEEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-S-----------C
T ss_pred cEEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-c-----------E
Confidence 99999754321 111111 2235666664 332 3445567899999953321 0 1
Q ss_pred eeeeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccC--CCcEEEEecCCCe----eE
Q 013293 220 EKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRH----TM 293 (446)
Q Consensus 220 ~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~Ia~G~~h----~~ 293 (446)
..... ....+..+..-....++...++.++.|-...... ....+.... ...+..+...... .+
T Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 164 MMVLQ-LPERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp SEEEE-CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred EEEEe-cCCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCeEE
Confidence 11111 1234555555566777888889998886532111 111111111 1123333333332 56
Q ss_pred EEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCC-----------CCcEEEEEecCC--eEEEEECCCCEEEEeCC
Q 013293 294 AVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-----------DQKVVQISCGWR--HTLAVTERQNVFSWGRG 359 (446)
Q Consensus 294 ~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-----------~~~i~~i~~G~~--h~~al~~~g~v~~wG~n 359 (446)
+-..+|.|..|-....... .....+.... ...|..++.... ..+.-..||.|+.|=..
T Consensus 233 ~~~~dg~i~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPA--------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp EEETTSEEEEEESSCSCHH--------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EecCCCcEEEEecCCCCcc--------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 6678999999876542110 0000111000 013666655433 44555689999999654
No 28
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=89.98 E-value=19 Score=36.99 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=37.4
Q ss_pred ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEe----cCCCeeE-EEeCCCcEEEeeeCCCCC
Q 013293 238 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS----GGWRHTM-AVTSDGKLYGWGWNKFGQ 311 (446)
Q Consensus 238 ~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia----~G~~h~~-~lt~~G~v~~wG~n~~Gq 311 (446)
.|++++..+|+||..|-...++. .........+.... +...+...+. .-.+|++ ++..+|+||+.|.+.++.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 57777777999999996443321 11101111111111 1111122221 2345764 556899999999876653
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=89.29 E-value=12 Score=33.49 Aligned_cols=186 Identities=10% Similarity=0.054 Sum_probs=101.0
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEc---CCceEEEEecCCcEEE
Q 013293 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC---GDSHCLAVTVEGEVQS 147 (446)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~---G~~h~~~lt~~G~vy~ 147 (446)
..|..++......+....+ |.|+.|-. + .+..........|..+.. .....+..+.+|.|+.
T Consensus 105 ~~i~~~~~~~~~l~~~~~d-~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWD-KTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCEEEEEEETTEEEEEETT-SEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCEEEEEecCCEEEEEeCC-CCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 4678888877777777777 99999941 0 121111122335655543 4667777788999999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC-CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeec
Q 013293 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD 226 (446)
Q Consensus 148 wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G-~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~ 226 (446)
|-... ....+.......|..++.. ....++-..+|.|+.|-.... .+.......
T Consensus 170 ~d~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~------------~~~~~~~~~ 224 (313)
T 3odt_A 170 WQNDK-------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG------------DVLRTYEGH 224 (313)
T ss_dssp EETTE-------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC------------CEEEEEECC
T ss_pred EecCc-------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch------------hhhhhhhcC
Confidence 95211 1111111122345555432 223566678899999964321 111111112
Q ss_pred CceEEEEEecCc-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCC-eeEEEeCCCcEEEe
Q 013293 227 REKMVMVACGWR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLYGW 304 (446)
Q Consensus 227 ~~~i~~ia~G~~-~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~-h~~~lt~~G~v~~w 304 (446)
...|..++...+ ..++-..+|.|+.|-.... .....+. .....|..++.... ..++-..||.|+.|
T Consensus 225 ~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~dg~i~iw 292 (313)
T 3odt_A 225 ESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-----------SLKQVIT-LPAISIWSVDCMSNGDIIVGSSDNLVRIF 292 (313)
T ss_dssp SSCEEEEEECTTSCEEEEETTSEEEEECTTTC-----------CEEEEEE-CSSSCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred CceEEEEEEecCCCEEEEecCCEEEEEECCCC-----------ceeEEEe-ccCceEEEEEEccCCCEEEEeCCCcEEEE
Confidence 345666665433 4556678889999853221 1111111 22234666665332 35566788999999
Q ss_pred eeCC
Q 013293 305 GWNK 308 (446)
Q Consensus 305 G~n~ 308 (446)
-...
T Consensus 293 ~~~~ 296 (313)
T 3odt_A 293 SQEK 296 (313)
T ss_dssp ESCG
T ss_pred eCCC
Confidence 7543
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=88.70 E-value=13 Score=33.44 Aligned_cols=224 Identities=10% Similarity=0.055 Sum_probs=112.1
Q ss_pred CcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEE
Q 013293 71 HEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQ 146 (446)
Q Consensus 71 ~~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy 146 (446)
..|..++...+ ..+....+ |.|+.|-..... .............|..++.. ..+.+..+.+|.|+
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEA-STLSIWDLAAPT----------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESS-SEEEEEECCCC------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcCC-CcEEEEECCCCC----------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 35666666533 34444556 999999643210 01111111123356666553 34566667889999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeee
Q 013293 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (446)
Q Consensus 147 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~ 224 (446)
.|-..... ....+.. ....|..++.. ....+....+|.|+.|-.... .+.....
T Consensus 167 ~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------~~~~~~~ 222 (337)
T 1gxr_A 167 VWDLHNQT-----------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------------RQLQQHD 222 (337)
T ss_dssp EEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------EEEEEEE
T ss_pred EEeCCCCc-----------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCC------------ceEeeec
Confidence 99754311 1111111 12356666653 345556678999999964321 0111111
Q ss_pred ecCceEEEEEec--CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC--CCeeEEEeCCCc
Q 013293 225 VDREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGK 300 (446)
Q Consensus 225 ~~~~~i~~ia~G--~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~ 300 (446)
....+..++.. ....++-..+|.|+.|-..... ...+.. ....|..++.. ....+....+|.
T Consensus 223 -~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 223 -FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQLHL-HESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEECC-CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEEcC-CccceeEEEECCCCCEEEEecCCCc
Confidence 12344444443 2344555667888888543211 111111 12336666554 344555567899
Q ss_pred EEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEec--CCeEEEEECCCCEEEE
Q 013293 301 LYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG--WRHTLAVTERQNVFSW 356 (446)
Q Consensus 301 v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G--~~h~~al~~~g~v~~w 356 (446)
|+.|-..... +. ........+..++.. ....++-..||.|+.|
T Consensus 289 i~~~~~~~~~------------~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 289 LNAWRTPYGA------------SI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp EEEEETTTCC------------EE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred EEEEECCCCe------------EE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 9998754321 11 111123455555543 3344445678888877
No 31
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=88.62 E-value=14 Score=33.65 Aligned_cols=289 Identities=12% Similarity=0.046 Sum_probs=137.6
Q ss_pred CCCCEEEEEecCCc-eEEEEe-----CCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC-----eeEE
Q 013293 17 PFRPVLLISAGASH-SVALLS-----GNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-----HTTA 85 (446)
Q Consensus 17 ~~~~i~~i~~G~~~-~~~l~~-----~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~-----~~~~ 85 (446)
-...|.+|+.-... .++... ||.|+.|-..... ..+.... -....|..++.... ..+.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLREI-EKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEEE-EESSCEEEEECTTCCTTTCCEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceeee-cccCcEEEEEEcCCCCCCceEEE
Confidence 34567777766544 333343 7888888543211 1111110 11235777777653 3344
Q ss_pred EEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEE--------cCCceEEEEecCCcEEEEeCCCCCCcC
Q 013293 86 YSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--------CGDSHCLAVTVEGEVQSWGRNQNGQLG 157 (446)
Q Consensus 86 l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~--------~G~~h~~~lt~~G~vy~wG~n~~gqlg 157 (446)
-..+ |.|..|-.....+ ....+. .....|..+. ....+.+.-..||.|..|-......
T Consensus 86 ~~~d-g~i~iwd~~~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-- 151 (357)
T 3i2n_A 86 GDFG-GNLHIWNLEAPEM----------PVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-- 151 (357)
T ss_dssp EETT-SCEEEECTTSCSS----------CSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--
T ss_pred ecCC-CeEEEEeCCCCCc----------cEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--
Confidence 4456 9999996443210 001111 1233566663 2234566667899999996543210
Q ss_pred CCCCCCcccceeecccC---CccEEEEE------eCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCc
Q 013293 158 LGTTEDSLVPQKLQAFE---GVSIKMVA------AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDRE 228 (446)
Q Consensus 158 ~~~~~~~~~p~~v~~~~---~~~i~~ia------~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~ 228 (446)
....+.... ...+..++ ......+.-..+|.|+.|-.... + +... .....
T Consensus 152 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~-----------~~~~-~~~~~ 210 (357)
T 3i2n_A 152 --------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-A-----------LRWE-TNIKN 210 (357)
T ss_dssp --------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-E-----------EEEE-EECSS
T ss_pred --------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-c-----------eeee-cCCCC
Confidence 011111111 22455555 34445556677899999964321 0 1111 11234
Q ss_pred eEEEEEec-----CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCC---eeEEEeCCCc
Q 013293 229 KMVMVACG-----WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMAVTSDGK 300 (446)
Q Consensus 229 ~i~~ia~G-----~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~---h~~~lt~~G~ 300 (446)
.|..++.. ....++-..+|.|+.|-...... .......... .....|..++.... ..+.-..+|.
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~ 283 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP------TKGFASVSEK-AHKSTVWQVRHLPQNRELFLTAGGAGG 283 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET------TTEEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc------ccceeeeccC-CCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence 56666554 34555667788888885432111 0111111111 12234666665443 3344468899
Q ss_pred EEEeeeCCCCCCcCCC----CCC---ccccEEEecCCCCcEEEEEecCCe--EE-EEECCCCEEEEeC
Q 013293 301 LYGWGWNKFGQVGVGD----NVD---HCSPVQVKFPLDQKVVQISCGWRH--TL-AVTERQNVFSWGR 358 (446)
Q Consensus 301 v~~wG~n~~GqLG~g~----~~~---~~~p~~v~~~~~~~i~~i~~G~~h--~~-al~~~g~v~~wG~ 358 (446)
|+.|-.......-... ... ...+..........|..++...+. .+ .-..||.|+.|=-
T Consensus 284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 9999865432211000 000 001111112223456666654332 22 3467888888843
No 32
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=87.34 E-value=17 Score=33.04 Aligned_cols=217 Identities=11% Similarity=0.023 Sum_probs=119.0
Q ss_pred CCCCEEEEEecCC--ceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec---CCeeEEEEcCCC
Q 013293 17 PFRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (446)
Q Consensus 17 ~~~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G---~~~~~~l~~~~g 91 (446)
....+..+..... +.+++|++|++|.---.+ |- +.... . + .-++.+|+.+.+- ..+.++++++ |
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp----~~~~~-~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~-G 90 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---AL----QGSKV-S-L-KSREEKIVGAFIREKFGNRLLLATKK-G 90 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HH----TSEEC-C-C-SSTTCCEEEEEEGGGSCSEEEEEETT-S
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---Cc----cCccc-c-c-CCCCCEEEEEECCcCCCCEEEEEeCC-C
Confidence 3455666655544 477899999999542111 00 00000 0 3 3345678887662 3467788888 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEc--CCceEEEEecCCcEEEEeCCCCCCcCCCCCCCccccee
Q 013293 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (446)
Q Consensus 92 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~--G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~ 169 (446)
.+.-.-..++-+- .. -...+....+..++.+.. +..+.+++|++|++|.+-..+.-.+|....-.. .
T Consensus 91 ~iKr~~l~~~~~~----~~---G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~ 159 (276)
T 3no0_A 91 YVKKIPLAEFEYK----AQ---GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----G 159 (276)
T ss_dssp EEEEEEGGGTTTC----ST---TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----C
T ss_pred EEEEEEHHHhhhh----cC---CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----E
Confidence 8888765554310 00 111222224556665543 456799999999999998665544443221111 1
Q ss_pred ecccCCccEEEEEeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEE--ecCceEEEEeC
Q 013293 170 LQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVA--CGWRHTISVSS 245 (446)
Q Consensus 170 v~~~~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia--~G~~~s~~l~~ 245 (446)
+..-++.+|+.+... ..+.+++|++|.+.-.-..++-..+.+....... ..+.+++.+. .+....+++++
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~t~ 233 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLITTK 233 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEEET
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEEcC
Confidence 222234567766543 3467888999988877654433222221111111 1223344332 34567889999
Q ss_pred CCCEEE--eeCCCCCCCC
Q 013293 246 SGRLYS--YGWSKYGQLG 261 (446)
Q Consensus 246 ~G~vy~--~G~n~~gqlG 261 (446)
+|++.. +-.++.-.+|
T Consensus 234 ~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 234 NGKAFYDKINQKDIPLST 251 (276)
T ss_dssp TSCEEEEEEEGGGSCBCC
T ss_pred CCeEEEeeeCHHHCCCcC
Confidence 999988 7655444443
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=86.80 E-value=20 Score=33.35 Aligned_cols=249 Identities=14% Similarity=0.035 Sum_probs=121.3
Q ss_pred CCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC---------eeEEE
Q 013293 16 APFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD---------HTTAY 86 (446)
Q Consensus 16 ~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~---------~~~~l 86 (446)
.-...|.+|+......+.-..||.|++|-...... .........+... ...|..++.... +.+..
T Consensus 14 ~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 14 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEecC-CCcEEEEEEecccccCCccccEEEEE
Confidence 34567888888775555555899999997644210 0001112222222 235666665433 33444
Q ss_pred EcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccC----CCCEEEEEcC------Cce-EEEEecCCcEEEEeCCC---
Q 013293 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH----SLRVKQIACG------DSH-CLAVTVEGEVQSWGRNQ--- 152 (446)
Q Consensus 87 ~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~----~~~I~~I~~G------~~h-~~~lt~~G~vy~wG~n~--- 152 (446)
..+ |.|+.|-...... ........+.... ...|..++.. ..+ .+..+.+|.|+.|-...
T Consensus 88 ~~d-g~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 88 SFS-GDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp ETT-SCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred cCC-CCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 556 9999996432111 0000112222221 2467776655 444 55667899999997543
Q ss_pred ---CCCcCCCCCCCcccce-eec------ccCCccEEEEEeCCC-eEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccee
Q 013293 153 ---NGQLGLGTTEDSLVPQ-KLQ------AFEGVSIKMVAAGAE-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEK 221 (446)
Q Consensus 153 ---~gqlg~~~~~~~~~p~-~v~------~~~~~~i~~ia~G~~-hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~ 221 (446)
...+- ..|. .+. ......|..++...+ ..+.-..+|.|+.|-.... .+..
T Consensus 161 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~ 221 (397)
T 1sq9_A 161 ESNSLTLN-------WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL------------RPLY 221 (397)
T ss_dssp HHHHTTTC-------CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT------------EEEE
T ss_pred ccccceee-------ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC------------ceeE
Confidence 11110 1111 111 111234555554433 4444457888998854321 1111
Q ss_pred eeee---c---CceEEEEEec--CceEEEEeCC---CCEEEeeCCCCCCCCCCCCCCceeeEEeccc------------C
Q 013293 222 VATV---D---REKMVMVACG--WRHTISVSSS---GRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL------------R 278 (446)
Q Consensus 222 v~~~---~---~~~i~~ia~G--~~~s~~l~~~---G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~------------~ 278 (446)
.... . ...|..++.. ..+.++-..+ |.|+.|-..... ....+... .
T Consensus 222 ~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 290 (397)
T 1sq9_A 222 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-----------RIGSLSVPTHSSQASLGEFAH 290 (397)
T ss_dssp EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-----------EEEEECBC--------CCBSB
T ss_pred EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-----------ccceeccCccccccccccccc
Confidence 1111 1 3456666543 2344445566 788888643211 11111110 2
Q ss_pred CCcEEEEecC--CCeeEEEeCCCcEEEeeeC
Q 013293 279 ESFISQISGG--WRHTMAVTSDGKLYGWGWN 307 (446)
Q Consensus 279 ~~~i~~Ia~G--~~h~~~lt~~G~v~~wG~n 307 (446)
...|..++.. ....+.-..+|.|+.|-..
T Consensus 291 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 2346666654 3444555678899998654
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=86.61 E-value=19 Score=32.86 Aligned_cols=201 Identities=10% Similarity=0.049 Sum_probs=94.4
Q ss_pred CCCCEEEEEecCCceEEE--EeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCE
Q 013293 17 PFRPVLLISAGASHSVAL--LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQ 92 (446)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l--~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~g~ 92 (446)
-...|..++.-.....++ ..||.|++|-..... ....+... ...|..++.. ..+.+....+ |.
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d-g~ 97 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----------RLGTLDGH-TGTIWSIDVDCFTKYCVTGSAD-YS 97 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----------EEEEECCC-SSCEEEEEECTTSSEEEEEETT-TE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----------hhhhhhhc-CCcEEEEEEcCCCCEEEEEeCC-Ce
Confidence 345677776654433333 367888888533211 11122211 2357777665 3344455566 99
Q ss_pred EEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecC-----CcEEEEeCCCCCCcCCCCCCCcc
Q 013293 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVE-----GEVQSWGRNQNGQLGLGTTEDSL 165 (446)
Q Consensus 93 v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~-----G~vy~wG~n~~gqlg~~~~~~~~ 165 (446)
|+.|-...... ...+. ....|..++.. ..+.++...+ |.|+.|-.........-......
T Consensus 98 i~iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 98 IKLWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp EEEEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred EEEEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 99996432111 11111 23356655543 3445555556 88888875432211100000000
Q ss_pred cceeeccc-CCccEEEEEe--CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC--ceE
Q 013293 166 VPQKLQAF-EGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW--RHT 240 (446)
Q Consensus 166 ~p~~v~~~-~~~~i~~ia~--G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~~s 240 (446)
....+... ....+..++. .....++-..+|.|+.|-.... ..+..........|..++... ...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l 233 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-----------YEYVDSIDLHEKSISDMQFSPDLTYF 233 (369)
T ss_dssp CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-----------TEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-----------cEeEEEEecCCCceeEEEECCCCCEE
Confidence 00111111 1113444443 3345556678899999854321 111111112234566665533 344
Q ss_pred EEEeCCCCEEEeeC
Q 013293 241 ISVSSSGRLYSYGW 254 (446)
Q Consensus 241 ~~l~~~G~vy~~G~ 254 (446)
+.-..+|.|+.|-.
T Consensus 234 ~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 234 ITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEETTSEEEEEET
T ss_pred EEecCCceEEEEEC
Confidence 55567888888853
No 35
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=86.58 E-value=20 Score=33.27 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=63.6
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC---------ceEEEEec
Q 013293 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD---------SHCLAVTV 141 (446)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~---------~h~~~lt~ 141 (446)
..|..|+......+.-..| |.|+.|-...... .........+. .....|..++... .+.+....
T Consensus 17 ~~i~~~~~~~~~l~s~~~d-g~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGD-GYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SCEEEEEECSSEEEEEETT-SEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cCeEEEEecCCeEEEEcCC-CEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 4688888777666666677 9999997543210 00000111111 2234577665543 34555677
Q ss_pred CCcEEEEeCCCCCCcCCCCCCCcccceeecccC----CccEEEEEeC------CCe-EEEEEcCCcEEEEeCC
Q 013293 142 EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE----GVSIKMVAAG------AEH-SVAVAEDGELYGWGWG 203 (446)
Q Consensus 142 ~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~----~~~i~~ia~G------~~h-s~~lt~~G~vy~~G~n 203 (446)
+|.|+.|-...... ........+.... ...|..++.. ..+ .+.-..+|.|+.|-..
T Consensus 90 dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 90 SGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp TSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred CCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 89999996433211 0000012222221 2356666554 444 5556789999999643
No 36
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=86.51 E-value=22 Score=33.53 Aligned_cols=226 Identities=8% Similarity=-0.001 Sum_probs=118.5
Q ss_pred EEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEEEEeC
Q 013293 73 IVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 73 i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy~wG~ 150 (446)
+..+.......++...+ |.|+.|-.... + ....+.......|..++.. ..+.++-+.+|.|..|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d-~~v~lw~~~~~-~----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALE-RNVYVWNADSG-S----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEET-TEEEEEETTTC-C----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECC-CeEEEeeCCCC-c----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 33366556777788888 99999975331 1 1112222234467777654 345666677999999975
Q ss_pred CCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceE
Q 013293 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKM 230 (446)
Q Consensus 151 n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i 230 (446)
..... ...+. .....|..++......+.-..+|.|+.|-....++ +..........|
T Consensus 164 ~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~v 220 (401)
T 4aez_A 164 ESQTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-----------QIGTLQGHSSEV 220 (401)
T ss_dssp TTCCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-----------EEEEEECCSSCE
T ss_pred cCCeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc-----------eeeEEcCCCCCe
Confidence 43211 11111 12336777777677777778899999996432111 111111123456
Q ss_pred EEEEec--CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC--CCeeEEEe---CCCcEEE
Q 013293 231 VMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVT---SDGKLYG 303 (446)
Q Consensus 231 ~~ia~G--~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt---~~G~v~~ 303 (446)
..++.. ..+.+.-..+|.|+.|-..... ....+.. ....|..++.. ..+.++.. .+|.|+.
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----------~~~~~~~-~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSI-----------PKFTKTN-HNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCSS-----------EEEEECC-CSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCCCCC-----------ccEEecC-CcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 665553 2345555678899998643210 0111111 12224444443 23344433 5889999
Q ss_pred eeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEE--E--CCCCEEEEeC
Q 013293 304 WGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV--T--ERQNVFSWGR 358 (446)
Q Consensus 304 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al--~--~~g~v~~wG~ 358 (446)
|-.... .+... +.....|..++...+...++ . .+|.|+.|=.
T Consensus 289 ~d~~~~------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 289 WNAATG------------ARVNT-VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EETTTC------------CEEEE-EECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred EECCCC------------CEEEE-EeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 865421 11111 11234566665543333222 2 5888888854
No 37
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.62 E-value=48 Score=36.62 Aligned_cols=219 Identities=15% Similarity=0.160 Sum_probs=100.1
Q ss_pred eEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC-CceEEEEecCCcEEEEeCCCCCCcCCCCC
Q 013293 83 TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (446)
Q Consensus 83 ~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G-~~h~~~lt~~G~vy~wG~n~~gqlg~~~~ 161 (446)
.+....+ |.|..|-..... ...+. .....|..++.. ....+....+|.|+.|-......
T Consensus 1018 l~s~~~d-g~i~vwd~~~~~------------~~~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~------ 1077 (1249)
T 3sfz_A 1018 LISSSED-SVIQVWNWQTGD------------YVFLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI------ 1077 (1249)
T ss_dssp EEEECSS-SBEEEEETTTTE------------EECCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC------
T ss_pred EEEEcCC-CEEEEEECCCCc------------eEEEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce------
Confidence 3334455 899999643311 11111 122346665543 45567778899999997543211
Q ss_pred CCcccceeecccCCccEEEEEe--CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCc-
Q 013293 162 EDSLVPQKLQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR- 238 (446)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~--G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~- 238 (446)
...+.. ....|..++. .....+.-..||.|+.|-......+. .+ ......|..++...+
T Consensus 1078 -----~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~-----------~l-~~h~~~v~~~~~s~dg 1139 (1249)
T 3sfz_A 1078 -----ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH-----------EL-KGHNGCVRCSAFSLDG 1139 (1249)
T ss_dssp -----CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB-----------CC-CCCSSCEEEEEECSSS
T ss_pred -----eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee-----------ee-ccCCCcEEEEEECCCC
Confidence 011111 1112333332 23344555678888888543211110 00 011234555544333
Q ss_pred -eEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEec---ccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcC
Q 013293 239 -HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE---ALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 314 (446)
Q Consensus 239 -~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~---~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~ 314 (446)
..+.-..+|.|+.|-......+.. ..|.... ......|..++......++++.+|.|..|-......+..
T Consensus 1140 ~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~~ 1213 (1249)
T 3sfz_A 1140 ILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQT 1213 (1249)
T ss_dssp SEEEEEETTSCCCEEESSSSCCCCC------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCCC
T ss_pred CEEEEEeCCCEEEEEECCCCceEEE------eccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCCceeee
Confidence 344446788888886433222111 0010000 011123555555444444444458888886544222211
Q ss_pred CCCCCccccEEEecCCCCcEE--EEEecCCeEEEEECCCCEEEEe
Q 013293 315 GDNVDHCSPVQVKFPLDQKVV--QISCGWRHTLAVTERQNVFSWG 357 (446)
Q Consensus 315 g~~~~~~~p~~v~~~~~~~i~--~i~~G~~h~~al~~~g~v~~wG 357 (446)
- . .....|. .++......++...+|.|+.|=
T Consensus 1214 ~-----------~-~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1214 F-----------Y-TNGTNLKKIHVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp C-----------C-CSSCCCCCCEECSSSCCEEEECTTCCEEEEC
T ss_pred e-----------e-ccCCcccEEEECCCCCEEEEecCCcEEEEEe
Confidence 0 0 0011222 3333444566677889999984
No 38
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=85.20 E-value=22 Score=32.35 Aligned_cols=193 Identities=10% Similarity=0.039 Sum_probs=100.5
Q ss_pred CCCCEEEEEcCCc-----eEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC--CCeEEEEEcC
Q 013293 122 HSLRVKQIACGDS-----HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAED 194 (446)
Q Consensus 122 ~~~~I~~I~~G~~-----h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~ 194 (446)
....|..|+.... ..+.-..||.|..|-....++ .....+.. ....|..++.. ....+.-..|
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCC
Confidence 3457888887654 455556789999997644221 11112221 12356666654 3455666789
Q ss_pred CcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEe--cCc--eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcee
Q 013293 195 GELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC--GWR--HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLV 270 (446)
Q Consensus 195 G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~--~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~ 270 (446)
|.|..|-.... .+..+ ......|..++. ... ..+.-..+|.|+.|=......
T Consensus 108 g~v~iwd~~~~------------~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----------- 163 (368)
T 3mmy_A 108 KTAKMWDLSSN------------QAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP----------- 163 (368)
T ss_dssp SEEEEEETTTT------------EEEEE-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-----------
T ss_pred CcEEEEEcCCC------------Cceee-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-----------
Confidence 99999964321 11111 112345666664 322 344556788999995332111
Q ss_pred eEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCC--CCcEEEEEecCCe----E
Q 013293 271 PCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL--DQKVVQISCGWRH----T 344 (446)
Q Consensus 271 p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~i~~i~~G~~h----~ 344 (446)
...+... ..+..+..-....++.+.++.++.|-...... ....+..+. ...+..+...... .
T Consensus 164 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 164 MMVLQLP--ERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp SEEEECS--SCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred EEEEecC--CCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCeE
Confidence 0111111 12445555556777778889999987653211 111111111 1223333333322 5
Q ss_pred EEEECCCCEEEEeCCC
Q 013293 345 LAVTERQNVFSWGRGT 360 (446)
Q Consensus 345 ~al~~~g~v~~wG~n~ 360 (446)
++-..+|.|..|=.+.
T Consensus 232 ~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEETTSEEEEEESSC
T ss_pred EEecCCCcEEEEecCC
Confidence 5667889888886543
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=84.81 E-value=23 Score=32.25 Aligned_cols=303 Identities=11% Similarity=0.050 Sum_probs=144.7
Q ss_pred CCCCEEEEEec------CCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecC-CCCCcEEEEEecCC------ee
Q 013293 17 PFRPVLLISAG------ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA-LDGHEIVSVTCGAD------HT 83 (446)
Q Consensus 17 ~~~~i~~i~~G------~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~-~~~~~i~~i~~G~~------~~ 83 (446)
-...|..|+.- ....++-..++.|..|-......+ ........ .....|..++.... ..
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 35678888775 444666667889999965432211 00011111 11234666665433 34
Q ss_pred EEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC---CceEEEEecCCcEEEEeCCCCCCcCCCC
Q 013293 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (446)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G---~~h~~~lt~~G~vy~wG~n~~gqlg~~~ 160 (446)
+.-..+ |.|..|-.... + ....+. .....|..++.. ....+.-..||.|+.|-.....
T Consensus 89 ~~~~~d-g~i~v~d~~~~-~----------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------ 149 (366)
T 3k26_A 89 AVAGSR-GIIRIINPITM-Q----------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------ 149 (366)
T ss_dssp EEEETT-CEEEEECTTTC-C----------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE------
T ss_pred EEecCC-CEEEEEEchhc-e----------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe------
Confidence 445566 99999954321 0 111111 124467777764 3556666789999999754311
Q ss_pred CCCcccceeec--ccCCccEEEEEeC--CCeEEEEEcCCcEEEEeCCCCCCcC-------CCCC-CC-------ccccee
Q 013293 161 TEDSLVPQKLQ--AFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLG-------LGDR-ND-------RLIPEK 221 (446)
Q Consensus 161 ~~~~~~p~~v~--~~~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG-------~~~~-~~-------~~~p~~ 221 (446)
....+. ......|..++.. ..+.+....||.|+.|-......+. ..+. .. ...|..
T Consensus 150 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 150 -----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp -----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred -----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 111111 1123357777654 3455666789999999654311000 0000 00 000000
Q ss_pred -eeeecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEeccc--CCCcEEEEec--C--CCeeEE
Q 013293 222 -VATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISG--G--WRHTMA 294 (446)
Q Consensus 222 -v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~Ia~--G--~~h~~~ 294 (446)
........|..++......+.-..+|.|..|-.....+.-............+..+ ....|..++. . ....+.
T Consensus 225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 00012234455554456667777899999997543322111000000011111111 1111322322 2 344555
Q ss_pred EeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCC-CCcEEEEEecC--CeEEEEECCCCEEEEeC
Q 013293 295 VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQISCGW--RHTLAVTERQNVFSWGR 358 (446)
Q Consensus 295 lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~i~~i~~G~--~h~~al~~~g~v~~wG~ 358 (446)
-..+|.|+.|-......+. .....+.... ...|..++... ...+.-..||.|+.|=-
T Consensus 305 ~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHK-------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECTTSCEEEEECCSSSGGG-------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EecCCcEEEEECCCCCCcc-------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 6788999999765421110 0111122111 35566666543 34455568899999853
No 40
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=84.25 E-value=26 Score=32.49 Aligned_cols=229 Identities=11% Similarity=0.053 Sum_probs=109.7
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEEEEe
Q 013293 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWG 149 (446)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy~wG 149 (446)
.|.+++...+..++...++|.|..|=...... .........-....|..|+.. ..+.+.-..||.|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 47777755444444433339999995432111 111111111123357777654 34555567889999996
Q ss_pred CCCCCCcCCCCCCCcccceeecccC--CccEEEEEeCCC---eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeee-
Q 013293 150 RNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA- 223 (446)
Q Consensus 150 ~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~ia~G~~---hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~- 223 (446)
.... +.+..+. ...|..++.... ..+.-..||.|..|-.... +. ...+.
T Consensus 156 ~~~~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~----------~~~~~~ 210 (344)
T 4gqb_B 156 LAQQ--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KP----------ASQIGC 210 (344)
T ss_dssp TTTT--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-SC----------EEECC-
T ss_pred CCCC--------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc-ce----------eeeeec
Confidence 4321 1112222 235666665432 2334467899999943221 10 00010
Q ss_pred eecCceEEEEEecC---ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCC---CeeEEEeC
Q 013293 224 TVDREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVTS 297 (446)
Q Consensus 224 ~~~~~~i~~ia~G~---~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~---~h~~~lt~ 297 (446)
......+..++... ...+.-..||.|..|=.... ++ ...+.. ....|..|+... .+.+.-.+
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~----------~~~~~~-h~~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SC----------VLSSAV-HSQCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---C----------CEEEEC-CSSCEEEEEECSSSSCCEEEEET
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cE----------EEEEcC-CCCCEEEEEEccCCCeEEEEEeC
Confidence 11122344454332 22333467888888843211 10 111111 123377776542 33334568
Q ss_pred CCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCC-eEEE--EECCCCEEEEeC
Q 013293 298 DGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR-HTLA--VTERQNVFSWGR 358 (446)
Q Consensus 298 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~-h~~a--l~~~g~v~~wG~ 358 (446)
||.|+.|-... +++ .... .....|..++-... ..++ -..||.|..|=-
T Consensus 279 D~~i~vwd~~~-~~~-----------~~~~-~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 279 DCSLAVLDSSL-SEL-----------FRSQ-AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp TSCEEEECTTC-CEE-----------EEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CCeEEEEECCC-CcE-----------EEEc-CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 99999995322 111 1111 12345777765422 2233 347999999953
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=83.81 E-value=28 Score=32.38 Aligned_cols=231 Identities=13% Similarity=0.061 Sum_probs=107.7
Q ss_pred cEEEEEecCCe-eEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC--ceEEEEecCCcEEEE
Q 013293 72 EIVSVTCGADH-TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSW 148 (446)
Q Consensus 72 ~i~~i~~G~~~-~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~--~h~~~lt~~G~vy~w 148 (446)
.|..++..... .++-..+ |.|..|=......+ ........-....|..|+... .+.+.-..||.|..|
T Consensus 96 ~V~~~~~s~d~~~l~~s~d-g~v~lWd~~~~~~~--------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDS-GAVELWEILEKESL--------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp CEEEEEEETTTEEEEEETT-SCEEEC----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CEEEEEEcCCCCEEEEECC-CEEEEeecccccee--------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 46666654433 3334444 88888842211100 000000001123576666543 345555688999999
Q ss_pred eCCCCCCcCCCCCCCcccceeecccC--CccEEEEEeCC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeee
Q 013293 149 GRNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (446)
Q Consensus 149 G~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~ia~G~---~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~ 223 (446)
-.... +.+..+. ...|..++... ...+.-..||.|..|-......+..- ..
T Consensus 167 d~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~----------~~ 222 (357)
T 4g56_B 167 DLSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI----------DF 222 (357)
T ss_dssp ETTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC----------CC
T ss_pred ECCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee----------ee
Confidence 64331 1111111 23566666532 34455678899999943221111000 00
Q ss_pred eecCceEEEEEecC--ceEE-EEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC---CCeeEEEeC
Q 013293 224 TVDREKMVMVACGW--RHTI-SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG---WRHTMAVTS 297 (446)
Q Consensus 224 ~~~~~~i~~ia~G~--~~s~-~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~ 297 (446)
......+..++... .+.+ .-..++.|+.|-.... + ....+.. ....|..|+.. ....+.-.+
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~----------~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-D----------SAQTSAV-HSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-G----------GCEEECC-CSSCEEEEEECSSSSCCEEEEET
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECCCC-c----------EeEEEec-cceeEEEEEEcCCCCCEEEEEeC
Confidence 01112355555432 2233 3367888988853221 1 1111211 22347777653 233334568
Q ss_pred CCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEec---CCeEEEEECCCCEEEEeCCC
Q 013293 298 DGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG---WRHTLAVTERQNVFSWGRGT 360 (446)
Q Consensus 298 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G---~~h~~al~~~g~v~~wG~n~ 360 (446)
||.|+.|-... ++ .... +.....|..|+.. ....+.-..||.|+.|=-..
T Consensus 291 D~~i~iwd~~~-~~-----------~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 291 DCTVAVLDADF-SE-----------VFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp TSCEEEECTTS-CE-----------EEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCEEEEEECCC-Cc-----------EeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 89999995322 11 1111 1223457777654 22233345799999995433
No 42
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=83.44 E-value=25 Score=31.57 Aligned_cols=166 Identities=12% Similarity=0.097 Sum_probs=80.2
Q ss_pred CCccEEEEEeC-CCeEEEEEcCCc-EEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCC-EE
Q 013293 174 EGVSIKMVAAG-AEHSVAVAEDGE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGR-LY 250 (446)
Q Consensus 174 ~~~~i~~ia~G-~~hs~~lt~~G~-vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~-vy 250 (446)
.+-++.-..++ ....++++.+|+ ++.++.... + ......|..+....+.++.-.........+++.+|+ +|
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp TTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred CCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEE
Confidence 34455555566 555666777887 455553210 0 011112333333334445434444556677777775 56
Q ss_pred EeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCC-Cc-EEEeeeCCCCCCcCCCCCCccccEEEec
Q 013293 251 SYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSD-GK-LYGWGWNKFGQVGVGDNVDHCSPVQVKF 328 (446)
Q Consensus 251 ~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~-G~-v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 328 (446)
.++... .|..+..+.+..+.-........++++.+ |+ +|-++.+... ......|.-+..
T Consensus 160 ~~~~~~-------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~~~~~ 220 (276)
T 3no2_A 160 SVKLSG-------------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVAQLFP 220 (276)
T ss_dssp EEECSS-------------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEEEEEE
T ss_pred EEECCC-------------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC------CccccccccceE
Confidence 666421 12222223333344233333346677766 65 4666543211 001123444444
Q ss_pred CCCCcEEEEEe--c---------CCeEEEEECCCCEEEEeCCCCCCCCC
Q 013293 329 PLDQKVVQISC--G---------WRHTLAVTERQNVFSWGRGTNGQLGH 366 (446)
Q Consensus 329 ~~~~~i~~i~~--G---------~~h~~al~~~g~v~~wG~n~~gqLG~ 366 (446)
..+.++. |+. | ..+.+.++.+|+| .|=.+...+.|.
T Consensus 221 ~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 221 LQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp CTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred cCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 4444443 333 2 3357888888887 566666666643
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=81.86 E-value=37 Score=32.44 Aligned_cols=239 Identities=9% Similarity=0.054 Sum_probs=128.8
Q ss_pred EEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC-ceEEEEecCCcEEEEeCC
Q 013293 73 IVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQSWGRN 151 (446)
Q Consensus 73 i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~-~h~~~lt~~G~vy~wG~n 151 (446)
+..++......+.-..| |.|..|-.... .+.....-....|..++... ...+.-..||.|..|-..
T Consensus 125 ~~~~~~~~~~l~sgs~d-g~i~vwd~~~~------------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADD-KMIRVYDSINK------------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEEEEETTEEEEEETT-SCEEEEETTTT------------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred EEEEEECCCEEEEEcCC-CcEEEEECCCC------------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence 55566666666667777 99999964321 11111111234677777553 366667789999999754
Q ss_pred CCCCcCCCCCCCcccceeecccCCccEEEEEeC----CCeEEEEEcCCcEEEEeCCCCCCcCCCCCC---------Cccc
Q 013293 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG----AEHSVAVAEDGELYGWGWGRYGNLGLGDRN---------DRLI 218 (446)
Q Consensus 152 ~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G----~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~---------~~~~ 218 (446)
... ....+.. ....|..++.. ....+.-..||.|..|-............. ....
T Consensus 192 ~~~-----------~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 192 KGC-----------CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTE-----------EEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCc-----------EEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 311 0111111 12245554432 245566678999999975543222110000 0000
Q ss_pred ceeeeee--cCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC--CCeeEE
Q 013293 219 PEKVATV--DREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMA 294 (446)
Q Consensus 219 p~~v~~~--~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~ 294 (446)
+..+..+ ....+..+.......+.-..+|.|+.|-.... .....+.. ....|..++.. ....+.
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM-----------KCLYILSG-HTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEEETTTTEEEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------cEEEEecC-CCCCEEEEEEcCCCCEEEE
Confidence 1111111 22456677666777777888999999964221 11111111 12335555543 345555
Q ss_pred EeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEEECCCCEEEEeCCC
Q 013293 295 VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGT 360 (446)
Q Consensus 295 lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al~~~g~v~~wG~n~ 360 (446)
-..||.|+.|-.... .+...-......|..++....+.+.-..||.|..|=-+.
T Consensus 328 g~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 328 ASMDTTIRIWDLENG------------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EeCCCcEEEEECCCC------------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 678889999864321 122221122346777777777777778999999996554
No 44
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=81.56 E-value=28 Score=30.79 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=11.2
Q ss_pred eeEEEeCCCcEEEeeeC
Q 013293 291 HTMAVTSDGKLYGWGWN 307 (446)
Q Consensus 291 h~~~lt~~G~v~~wG~n 307 (446)
..++++.+|++|+-...
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 45667777777776543
No 45
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=80.74 E-value=35 Score=31.50 Aligned_cols=299 Identities=9% Similarity=-0.025 Sum_probs=142.1
Q ss_pred CCCCEEEEEecC-Cc--eEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeec----CCCCCcEEEEEec---CCeeEEE
Q 013293 17 PFRPVLLISAGA-SH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLS----ALDGHEIVSVTCG---ADHTTAY 86 (446)
Q Consensus 17 ~~~~i~~i~~G~-~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~----~~~~~~i~~i~~G---~~~~~~l 86 (446)
-...|..++.-. .. .+.-..||.|..|-.........-. ......+. ......|..++.. ....+..
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT---CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE---ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe---ccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 456888888765 33 3334479999999755422111000 00000000 0122457777764 3345555
Q ss_pred EcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC-----ceEEEEecCCcEEEEeCCCCCCcCCCCC
Q 013293 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (446)
Q Consensus 87 ~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~-----~h~~~lt~~G~vy~wG~n~~gqlg~~~~ 161 (446)
..+ |.|..|-.... .+..... ....+..+.... ...++-..+|.|+.|-......
T Consensus 119 ~~d-~~i~iwd~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------ 178 (408)
T 4a11_B 119 SFD-KTLKVWDTNTL------------QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------ 178 (408)
T ss_dssp ETT-SEEEEEETTTT------------EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------
T ss_pred eCC-CeEEEeeCCCC------------ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------
Confidence 567 99999964321 1111111 122445544432 2566667899999997543211
Q ss_pred CCcccceeecccCCccEEEEEeCCC---eEEEEEcCCcEEEEeCCCCCCcCC-C---CCCCcccceeeeeecCceEEEEE
Q 013293 162 EDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGL-G---DRNDRLIPEKVATVDREKMVMVA 234 (446)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G~~---hs~~lt~~G~vy~~G~n~~gqlG~-~---~~~~~~~p~~v~~~~~~~i~~ia 234 (446)
...+.. ....|..++.... ..+.-..+|.|+.|-.......-. - .......+..........|..++
T Consensus 179 -----~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 -----SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp -----CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred -----eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 111111 1235666665433 245567899999997543221100 0 00000000000011223466665
Q ss_pred ecC--ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCC
Q 013293 235 CGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 312 (446)
Q Consensus 235 ~G~--~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqL 312 (446)
... .+.+....+|.|+.|-......+-.... ...........+..........++...++.|+.|-....-
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-- 325 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-----KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-- 325 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-----CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC--
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccc-----cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc--
Confidence 543 3566667899999997543222110000 0000001111122222334455666778999998754321
Q ss_pred cCCCCCCccccEEEecCCCCcEEEEEecC--CeEEEEECCCCEEEEeCCCC
Q 013293 313 GVGDNVDHCSPVQVKFPLDQKVVQISCGW--RHTLAVTERQNVFSWGRGTN 361 (446)
Q Consensus 313 G~g~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~al~~~g~v~~wG~n~~ 361 (446)
+...-......|..++... ...+.-..||.|+.|=-...
T Consensus 326 ----------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 326 ----------QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp ----------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred ----------ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 1111111234566555543 34455567999999965443
No 46
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=80.71 E-value=34 Score=31.25 Aligned_cols=242 Identities=13% Similarity=0.058 Sum_probs=121.9
Q ss_pred CCCEEEEEecCCceEEEE--eCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec----CCeeEEEEcCCC
Q 013293 18 FRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG----ADHTTAYSESCM 91 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G----~~~~~~l~~~~g 91 (446)
...|..++.-.....+++ .||.|..|=.... .......+.. ....|..++.. ....+....| |
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d-g 79 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD-G 79 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETT---------EEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETT-S
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCC---------cceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccC-C
Confidence 456777776554433333 5888888854310 0001111111 12357777764 4455556667 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC----ceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc
Q 013293 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVP 167 (446)
Q Consensus 92 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~----~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 167 (446)
.|..|-.... ...+..........|..++... ...+..+.||.|..|-....... .+
T Consensus 80 ~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------~~ 140 (379)
T 3jrp_A 80 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SP 140 (379)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---------CE
T ss_pred EEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---------ee
Confidence 9999954321 0111111122344677777653 45677788999999976442110 11
Q ss_pred eeecccCCccEEEEEeC---------------CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee--cCceE
Q 013293 168 QKLQAFEGVSIKMVAAG---------------AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV--DREKM 230 (446)
Q Consensus 168 ~~v~~~~~~~i~~ia~G---------------~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i 230 (446)
..+.. ....|..++.. ....+.-..||.|+.|-..... .....+..+ ....|
T Consensus 141 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 141 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------QTYVLESTLEGHSDWV 209 (379)
T ss_dssp EEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT----------TEEEEEEEECCCSSCE
T ss_pred EEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC----------cceeeEEEEecccCcE
Confidence 11111 12245555543 3456666789999999532110 001111111 23456
Q ss_pred EEEEecC-----ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecc-cCCCcEEEEecC--CCeeEEEeCCCcEE
Q 013293 231 VMVACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEA-LRESFISQISGG--WRHTMAVTSDGKLY 302 (446)
Q Consensus 231 ~~ia~G~-----~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~Ia~G--~~h~~~lt~~G~v~ 302 (446)
..++... ...+....+|.|..|-...... ......... -....|..++.. ..+.++-..+|.|+
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 281 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG--------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 281 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS--------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc--------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence 6666553 3455566789999986433110 000111111 012235555543 33444556889999
Q ss_pred EeeeCC
Q 013293 303 GWGWNK 308 (446)
Q Consensus 303 ~wG~n~ 308 (446)
.|-.+.
T Consensus 282 iw~~~~ 287 (379)
T 3jrp_A 282 LWKENL 287 (379)
T ss_dssp EEEEEE
T ss_pred EEeCCC
Confidence 987653
No 47
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=78.99 E-value=25 Score=31.75 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=12.2
Q ss_pred CceEEEEeCCCCEEEeeC
Q 013293 237 WRHTISVSSSGRLYSYGW 254 (446)
Q Consensus 237 ~~~s~~l~~~G~vy~~G~ 254 (446)
..|++++. ++++|.+|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 35666655 789999984
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=78.94 E-value=42 Score=31.34 Aligned_cols=266 Identities=9% Similarity=-0.007 Sum_probs=128.7
Q ss_pred EEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEE---ecCCeeEEEEcCCCEEEEEeCCC
Q 013293 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVT---CGADHTTAYSESCMQVYSWGWGD 100 (446)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~---~G~~~~~~l~~~~g~v~~wG~n~ 100 (446)
.+....+.+.-..||.++.|-....... ..+....+..+. ......+.-..+ |.|..|-...
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~ 128 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGS--------------KMLKRADYTAVDTAKLQMRRFILGTTE-GDIKVLDSNF 128 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETT--------------TTSCSCCEEEEEEECSSSCEEEEEETT-SCEEEECTTS
T ss_pred eeecCCeEEEEEcCCcEEEEEeccccee--------------eEEecCCceEEEEEecCCCEEEEEECC-CCEEEEeCCC
Confidence 4444555566667899999964332111 011111222222 233344444566 8999994321
Q ss_pred CCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccE
Q 013293 101 FGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSI 178 (446)
Q Consensus 101 ~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i 178 (446)
..+..........|..++.. ..+.+.-..||.|+.|-...... ...+.. ....|
T Consensus 129 ------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----------~~~~~~-h~~~v 184 (420)
T 3vl1_A 129 ------------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-----------PRTLIG-HRATV 184 (420)
T ss_dssp ------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----------CEEEEC-CSSCE
T ss_pred ------------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----------ceEEcC-CCCcE
Confidence 01222211234467777664 34566667889999997543211 111211 12245
Q ss_pred EEEEeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeee--ecCceEEEEEe-------------------
Q 013293 179 KMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT--VDREKMVMVAC------------------- 235 (446)
Q Consensus 179 ~~ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~--~~~~~i~~ia~------------------- 235 (446)
..++.. ....+.-..||.|..|-......+. .+.. .....+..++.
T Consensus 185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH-----------TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEE-----------EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE-----------EeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence 555543 3445556678999999643211000 0000 00111222221
Q ss_pred ----cCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCC---eeEEEeCCCcEEEeeeCC
Q 013293 236 ----GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMAVTSDGKLYGWGWNK 308 (446)
Q Consensus 236 ----G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~---h~~~lt~~G~v~~wG~n~ 308 (446)
...+.++-..+|.|+.|-.... ..+..+.......|..++.... ..+.-..+|.|+.|-...
T Consensus 254 ~~s~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 322 (420)
T 3vl1_A 254 EFGTYGKYVIAGHVSGVITVHNVFSK-----------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322 (420)
T ss_dssp CSSCTTEEEEEEETTSCEEEEETTTC-----------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCC-----------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence 1223445567888888853221 1122222222234666665433 455557889999997543
Q ss_pred CCCCcCCCCCCccccEEEecCCCCcEEEEEecCCeEEEE-ECCCCEEEEeCCC
Q 013293 309 FGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV-TERQNVFSWGRGT 360 (446)
Q Consensus 309 ~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~al-~~~g~v~~wG~n~ 360 (446)
..+ ....+.......+..+.......++. ..||.|..|--..
T Consensus 323 ~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 323 PEC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TTS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CcC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 211 01122222334555555554444443 4688999996433
No 49
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=78.39 E-value=43 Score=31.13 Aligned_cols=224 Identities=13% Similarity=0.026 Sum_probs=117.9
Q ss_pred EEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCC-----CeEEEEEcCCcEEEEeCC
Q 013293 129 IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-----EHSVAVAEDGELYGWGWG 203 (446)
Q Consensus 129 I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~-----~hs~~lt~~G~vy~~G~n 203 (446)
.+....+.+++|+.|++|..-..+-...+.... -......+..-++++|+.+.... ...+++|++|.+.-.-..
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~-G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~ 127 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR-GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT 127 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC-CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC-CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH
Confidence 345677889999999999987544332221110 01111122223567888876654 467889999988866533
Q ss_pred CCCCcCCCCCCCcccceeeeeecCceEEE--EEecCceEEEEeCCCCEEEeeCC--CCCCCCCCCCCCceeeEEecccCC
Q 013293 204 RYGNLGLGDRNDRLIPEKVATVDREKMVM--VACGWRHTISVSSSGRLYSYGWS--KYGQLGHGDFKDHLVPCQLEALRE 279 (446)
Q Consensus 204 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~~s~~l~~~G~vy~~G~n--~~gqlG~~~~~~~~~p~~v~~~~~ 279 (446)
.|-... +.-...+..-++..++. +..+..+.++++++|++|.+--. +--.+|...... ..+..-.+
T Consensus 128 ~~~~~~------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L~~~ 197 (327)
T 3uc1_A 128 DFDSNR------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRFNID 197 (327)
T ss_dssp GGCCCC------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCCCTT
T ss_pred Hhhccc------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecCCCC
Confidence 321110 00000111112333433 33466788999999999999876 443344332111 11222334
Q ss_pred CcEEEEecC--CCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCC-CCcEEEEE--ecCCeEEEEECCCCEE
Q 013293 280 SFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQIS--CGWRHTLAVTERQNVF 354 (446)
Q Consensus 280 ~~i~~Ia~G--~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~i~~i~--~G~~h~~al~~~g~v~ 354 (446)
..|+.+..- ..+.+++|++|.+.-.=...+-..+.+..- -..+++.. +..++.+. .+....++++++|.+.
T Consensus 198 d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G----~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~i 273 (327)
T 3uc1_A 198 DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG----VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 273 (327)
T ss_dssp CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC----EESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEE
T ss_pred CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc----EEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEE
Confidence 557665543 346777888887665433333211111000 00011111 22344332 3567888999999999
Q ss_pred EEeCCCCCCCCCC
Q 013293 355 SWGRGTNGQLGHG 367 (446)
Q Consensus 355 ~wG~n~~gqLG~g 367 (446)
.+--.+--.+|..
T Consensus 274 r~~~~~i~~~gR~ 286 (327)
T 3uc1_A 274 RTAARQVRKAGRQ 286 (327)
T ss_dssp EEEGGGSCBCCTT
T ss_pred EEehhhccccCCC
Confidence 8866555555443
No 50
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=78.12 E-value=40 Score=30.53 Aligned_cols=24 Identities=4% Similarity=0.030 Sum_probs=14.0
Q ss_pred EEEEecCCCeeEEEeCCCc-EEEee
Q 013293 282 ISQISGGWRHTMAVTSDGK-LYGWG 305 (446)
Q Consensus 282 i~~Ia~G~~h~~~lt~~G~-v~~wG 305 (446)
+..+..+....++++.+|+ +|+-.
T Consensus 266 ~~~~~~~~~~~~~~s~dg~~l~v~~ 290 (353)
T 3vgz_A 266 LAKVAAPESLAVLFNPARNEAYVTH 290 (353)
T ss_dssp EEEEECSSCCCEEEETTTTEEEEEE
T ss_pred EEEEEcCCCceEEECCCCCEEEEEE
Confidence 3444455555677777776 66543
No 51
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=76.19 E-value=63 Score=31.89 Aligned_cols=187 Identities=13% Similarity=0.106 Sum_probs=97.5
Q ss_pred cEEEEEecCC---eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCC---CEEEEEcCC---ceEEEEecC
Q 013293 72 EIVSVTCGAD---HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSL---RVKQIACGD---SHCLAVTVE 142 (446)
Q Consensus 72 ~i~~i~~G~~---~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~---~I~~I~~G~---~h~~~lt~~ 142 (446)
.|..++.... ..+....+ |.|..|-.... .....+.. ... .|..++... ...+..+.+
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d-~~v~vwd~~~~-----------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDD-GSVVFYQGPPF-----------KFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETT-TEEEEEETTTB-----------EEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred cEEEEEECCCCCcEEEEEeCC-CcEEEEeCCCc-----------ceeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 4666665544 34444556 99999953211 01111111 122 577777653 355566789
Q ss_pred CcEEEEeCCCCCCcCCCCCCCcccceeecc---cCCccEEEEEe-CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccc
Q 013293 143 GEVQSWGRNQNGQLGLGTTEDSLVPQKLQA---FEGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI 218 (446)
Q Consensus 143 G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~---~~~~~i~~ia~-G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~ 218 (446)
|.|+.|-...... ...+.. .....|..++. .....+....+|.|..|-.... ++
T Consensus 229 g~i~vwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~---------- 286 (615)
T 1pgu_A 229 RKISCFDGKSGEF-----------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KC---------- 286 (615)
T ss_dssp CCEEEEETTTCCE-----------EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EE----------
T ss_pred CeEEEEECCCCCE-----------eEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC-cE----------
Confidence 9999997533111 111100 12235666655 4445566677899999964321 10
Q ss_pred ceeeeee---cCceEEEEEe-cCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEE
Q 013293 219 PEKVATV---DREKMVMVAC-GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMA 294 (446)
Q Consensus 219 p~~v~~~---~~~~i~~ia~-G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~ 294 (446)
...+... ....+..+.. .....++...+|.|+.|-... ..+..........|..++. .. .+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~-l~~ 352 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP-LIS 352 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-TEE
T ss_pred EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-cEE
Confidence 0011100 0112222222 455667778899999985322 1121111122345888888 66 666
Q ss_pred EeCCCcEEEeeeC
Q 013293 295 VTSDGKLYGWGWN 307 (446)
Q Consensus 295 lt~~G~v~~wG~n 307 (446)
-..+|.|..|-..
T Consensus 353 ~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 353 GSYDGRIMEWSSS 365 (615)
T ss_dssp EETTSCEEETTTT
T ss_pred ECCCCeEEEEEch
Confidence 6789999998644
No 52
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=75.68 E-value=44 Score=29.85 Aligned_cols=166 Identities=15% Similarity=0.161 Sum_probs=81.3
Q ss_pred CCCCEEEEEcC-CceEEEEecCCc-EEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCc-EE
Q 013293 122 HSLRVKQIACG-DSHCLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE-LY 198 (446)
Q Consensus 122 ~~~~I~~I~~G-~~h~~~lt~~G~-vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~-vy 198 (446)
.+-++.-..++ ....++++.+|+ ++.++.... + ......|..+....+-.+.-.........+++.+|+ +|
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp TTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred CCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEE
Confidence 34455555566 566777788887 466654211 0 001112222222333344433444555666776775 35
Q ss_pred EEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEeCC-CC-EEEeeCCCCCCCCCCCCCCceeeEEecc
Q 013293 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSS-GR-LYSYGWSKYGQLGHGDFKDHLVPCQLEA 276 (446)
Q Consensus 199 ~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~-G~-vy~~G~n~~gqlG~~~~~~~~~p~~v~~ 276 (446)
.++.. ..|.-+..+.+.++.-........++++.+ |+ +|.++.+.... .....|.-+..
T Consensus 160 ~~~~~-------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~------~~l~~~~~~~~ 220 (276)
T 3no2_A 160 SVKLS-------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG------VQLFFVAQLFP 220 (276)
T ss_dssp EEECS-------------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS------CCCSEEEEEEE
T ss_pred EEECC-------------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC------ccccccccceE
Confidence 55431 112233344444555334444456777777 75 57776432110 01122444443
Q ss_pred cCCCcEEEEec--C---------CCeeEEEeCCCcEEEeeeCCCCCCcC
Q 013293 277 LRESFISQISG--G---------WRHTMAVTSDGKLYGWGWNKFGQVGV 314 (446)
Q Consensus 277 ~~~~~i~~Ia~--G---------~~h~~~lt~~G~v~~wG~n~~GqLG~ 314 (446)
+.+..+. |+. | ..+.+.++.+|+| .|=.+.....|.
T Consensus 221 ~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 221 LQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp CTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred cCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 4443333 332 2 3357778888887 666666666654
No 53
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=74.36 E-value=54 Score=30.21 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.1
Q ss_pred CceEEEEecCCcEEEEeC
Q 013293 133 DSHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~ 150 (446)
..|++++ .+++||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4566666 6899999995
No 54
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=73.98 E-value=58 Score=30.40 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=79.3
Q ss_pred EEecCCceEEE---EeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecC---CeeEEEEcCCCEEEEEe
Q 013293 24 ISAGASHSVAL---LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSESCMQVYSWG 97 (446)
Q Consensus 24 i~~G~~~~~~l---~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~---~~~~~l~~~~g~v~~wG 97 (446)
+++......++ ..+|.|++|-....+.+.. ..+ .+.. -...|..++... ...+.-..| |.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~-~~~~-h~~~V~~~~~~p~~~~~l~s~s~d-g~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------NVP-LVCG-HTAPVLDIAWCPHNDNVIASGSED-CTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------TCC-CBCC-CSSCEEEEEECTTCTTEEEEEETT-SEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------CCc-eEec-CCCCEEEEEeCCCCCCEEEEEeCC-CeEEEEE
Confidence 44555555554 3578999997655443311 000 1111 123577777643 344444556 9999997
Q ss_pred CCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC---ceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeec-cc
Q 013293 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ-AF 173 (446)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~---~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~-~~ 173 (446)
....+... ....+..........|..|+... ...+.-..||.|+.|-..... ....+. ..
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~ 174 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGPDV 174 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECTTT
T ss_pred ccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEecCC
Confidence 55432211 00011111111234677777653 345556789999999754311 011110 11
Q ss_pred CCccEEEEEeC--CCeEEEEEcCCcEEEEeC
Q 013293 174 EGVSIKMVAAG--AEHSVAVAEDGELYGWGW 202 (446)
Q Consensus 174 ~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~ 202 (446)
....|..++.. ....+.-..||.|+.|-.
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 22356666653 344555567899999964
No 55
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=73.88 E-value=53 Score=29.87 Aligned_cols=238 Identities=11% Similarity=0.090 Sum_probs=119.9
Q ss_pred cEEEEEecCCe--eEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeeccc--CCCCEEEEEcC----CceEEEEecCC
Q 013293 72 EIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (446)
Q Consensus 72 ~i~~i~~G~~~--~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l--~~~~I~~I~~G----~~h~~~lt~~G 143 (446)
.|..++...+. .+.-..+ |.|+.|=... . ....+..+ ....|..++.. ....+....||
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~----------~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEG----------E--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEEEET----------T--EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEEEEEcCCCCEEEEEECC-CcEEEEecCC----------C--cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 46666655433 3333356 8899995321 0 11222222 23467777764 45666777899
Q ss_pred cEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCC----CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccc
Q 013293 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (446)
Q Consensus 144 ~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~----~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p 219 (446)
.|..|-..... ..+..........|..++... ...+....+|.|..|-...... ..
T Consensus 80 ~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----------~~ 139 (379)
T 3jrp_A 80 KVLIWKEENGR----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----------TS 139 (379)
T ss_dssp CEEEEEEETTE----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC----------CC
T ss_pred EEEEEEcCCCc----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc----------ee
Confidence 99999643210 001111111233577766653 4566677899999996543211 11
Q ss_pred eeeeeecCceEEEEEec---------------CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeE-EecccCCCcEE
Q 013293 220 EKVATVDREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC-QLEALRESFIS 283 (446)
Q Consensus 220 ~~v~~~~~~~i~~ia~G---------------~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~-~v~~~~~~~i~ 283 (446)
..........|..++.. ....+.-..+|.|+.|-..... ....+. .+. .....|.
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~-~h~~~v~ 210 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLE-GHSDWVR 210 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEEC-CCSSCEE
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEe-cccCcEe
Confidence 11111122345555543 3455666788999998532110 111111 111 1123466
Q ss_pred EEecCC-----CeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEe-cCCCCcEEEEEecCC--eEEEEECCCCEEE
Q 013293 284 QISGGW-----RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVK-FPLDQKVVQISCGWR--HTLAVTERQNVFS 355 (446)
Q Consensus 284 ~Ia~G~-----~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~-~~~~~~i~~i~~G~~--h~~al~~~g~v~~ 355 (446)
.++... ...+....||.|..|-....... ....... ......|..++...+ ..++-..||.|+.
T Consensus 211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282 (379)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEE
T ss_pred EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc--------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEE
Confidence 666543 34445567899999976542100 0001111 112344655554433 3444568999999
Q ss_pred EeCC
Q 013293 356 WGRG 359 (446)
Q Consensus 356 wG~n 359 (446)
|=.+
T Consensus 283 w~~~ 286 (379)
T 3jrp_A 283 WKEN 286 (379)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 9654
No 56
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=73.17 E-value=61 Score=30.26 Aligned_cols=149 Identities=14% Similarity=0.093 Sum_probs=78.3
Q ss_pred EEecCCeeEEEE---cCCCEEEEEeCCCCCCcCCCCCCCceeeeeeccc--CCCCEEEEEcC---CceEEEEecCCcEEE
Q 013293 76 VTCGADHTTAYS---ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG---DSHCLAVTVEGEVQS 147 (446)
Q Consensus 76 i~~G~~~~~~l~---~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l--~~~~I~~I~~G---~~h~~~lt~~G~vy~ 147 (446)
+++...+..++. .+ |.|+.|-....+++. ..+..+ ....|..++.. ....+.-..||.|..
T Consensus 40 ~~~~~~~~~~~~~~~~~-g~i~v~~~~~~~~~~----------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 40 CAVNPKFMALICEASGG-GAFLVLPLGKTGRVD----------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp EEECSSEEEEEBCCSSS-CCEEEEETTCCEECC----------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred EEECCCeEEEEEEEcCC-CEEEEEECccCCCCC----------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 555666655553 35 899999765544321 111111 23357777663 445566678999999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCC---eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeee
Q 013293 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (446)
Q Consensus 148 wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~---hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~ 224 (446)
|-....+... ....+..........|..++.... ..+.-..||.|+.|-.... ..+..
T Consensus 109 w~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~ 169 (402)
T 2aq5_A 109 WEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------------AAVLT 169 (402)
T ss_dssp EECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------------EEEEE
T ss_pred EEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------------CccEE
Confidence 9765432111 000111111112235777765543 4455568999999964321 11112
Q ss_pred e----cCceEEEEEec--CceEEEEeCCCCEEEeeC
Q 013293 225 V----DREKMVMVACG--WRHTISVSSSGRLYSYGW 254 (446)
Q Consensus 225 ~----~~~~i~~ia~G--~~~s~~l~~~G~vy~~G~ 254 (446)
+ ....|..++.. ....+.-..+|.|+.|-.
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 2 22456666553 234455567888888853
No 57
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=72.85 E-value=93 Score=32.29 Aligned_cols=245 Identities=13% Similarity=0.055 Sum_probs=119.9
Q ss_pred CCCEEEEEecCCc--eEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec----CCeeEEEEcCCC
Q 013293 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG----ADHTTAYSESCM 91 (446)
Q Consensus 18 ~~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G----~~~~~~l~~~~g 91 (446)
...|..++..... .+.-..||.|.+|-.... .......+..- ...|..++.. ....+....| |
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~---------~~~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~D-g 77 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD-G 77 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETT---------EEEEEEEECCC-SSCEEEEEECCTTSCSEEEEEETT-S
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCC---------CCccceeccCC-cCceEEEEecCCCCCCEEEEEeCC-C
Confidence 3456666654333 333346899999953210 00011111111 2357777764 3445555666 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC----CceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc
Q 013293 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVP 167 (446)
Q Consensus 92 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G----~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 167 (446)
.|+.|-.... ...+..........|..++.. ....+..+.||.|..|-....... ..
T Consensus 78 ~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---------~~ 138 (753)
T 3jro_A 78 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SP 138 (753)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------CC
T ss_pred eEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------ce
Confidence 9999964321 111112122234467777765 346677788999999975432111 11
Q ss_pred eeecccCCccEEEEEeC---------------CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEE
Q 013293 168 QKLQAFEGVSIKMVAAG---------------AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVM 232 (446)
Q Consensus 168 ~~v~~~~~~~i~~ia~G---------------~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 232 (446)
..+.. ....|..++.. ....+.-..||.|+.|-..... ....+..........|..
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRD 209 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEE
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcEEE
Confidence 11111 12245555543 3455666779999999532210 001111111112345777
Q ss_pred EEecC-----ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEe--cCCCeeEEEeCCCcEEEee
Q 013293 233 VACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS--GGWRHTMAVTSDGKLYGWG 305 (446)
Q Consensus 233 ia~G~-----~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia--~G~~h~~~lt~~G~v~~wG 305 (446)
++... ...+.-..+|.|+.|-.......-. ........ ....|..++ ....+.+.-..||.|+.|-
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~------~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK------KTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB------CCBSSSSC-CSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce------eEEeccCC-CCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 76553 3455556789999996433210000 00000000 011233333 3344455556899999997
Q ss_pred eCC
Q 013293 306 WNK 308 (446)
Q Consensus 306 ~n~ 308 (446)
.+.
T Consensus 283 ~~~ 285 (753)
T 3jro_A 283 ENL 285 (753)
T ss_dssp CCS
T ss_pred cCC
Confidence 664
No 58
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=70.13 E-value=68 Score=29.60 Aligned_cols=239 Identities=13% Similarity=0.071 Sum_probs=111.7
Q ss_pred CCCEEEEEecCCceE--EEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCEE
Q 013293 18 FRPVLLISAGASHSV--ALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~--~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~g~v 93 (446)
...|..++....... .-..+|.|+.|- ..++ ....+.. ....|..++.. ..+.+....+ |.|
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-~~i 173 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN--KTGA----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVE-NVT 173 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE--TTSC----------EEEEECC-CCSCEEEEEECTTSSEEEEEETT-CCE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC----------eeeeccC-CCccEEEEEECCCCCEEEEEecC-CeE
Confidence 337777777654333 334788899895 1111 1111211 12356776664 3344445556 899
Q ss_pred EEEeCCCCCCcCCCCCCCceeeeeec----ccCCCCEEEEEc-CCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccce
Q 013293 94 YSWGWGDFGRLGHGNSSDLFTPLPIK----ALHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQ 168 (446)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~----~l~~~~I~~I~~-G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~ 168 (446)
+.|-......+..-..... ....+. ......+..++. .....++.+.+|.|+.|-...... ..
T Consensus 174 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-----------~~ 241 (425)
T 1r5m_A 174 ILWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-----------TG 241 (425)
T ss_dssp EEEETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-----------SE
T ss_pred EEEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-----------ee
Confidence 9997543211100000000 000000 000000222221 234566777889999997543211 01
Q ss_pred eecccCCccEEEEEe--CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCc-eEEEEeC
Q 013293 169 KLQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR-HTISVSS 245 (446)
Q Consensus 169 ~v~~~~~~~i~~ia~--G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~-~s~~l~~ 245 (446)
.+.. ....|..++. .....+.-..+|.|+.|-.... .+..........|..++.... ..++...
T Consensus 242 ~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 308 (425)
T 1r5m_A 242 KLIG-HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG------------NSQNCFYGHSQSIVSASWVGDDKVISCSM 308 (425)
T ss_dssp EECC-CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB------------SCSEEECCCSSCEEEEEEETTTEEEEEET
T ss_pred eecc-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC------------ccceEecCCCccEEEEEECCCCEEEEEeC
Confidence 1111 1224555543 3445566667899999953321 011111112234555554433 5556677
Q ss_pred CCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC--CCeeEEEeCCCcEEEeeeC
Q 013293 246 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWN 307 (446)
Q Consensus 246 ~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~v~~wG~n 307 (446)
+|.|+.|-.... .....+. .....|..++.. ....++-..+|.|+.|-..
T Consensus 309 d~~i~i~d~~~~-----------~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 309 DGSVRLWSLKQN-----------TLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TSEEEEEETTTT-----------EEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCcEEEEECCCC-----------cEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 888888854221 1111111 122346665543 3445555678899998754
No 59
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=70.08 E-value=54 Score=28.36 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=11.6
Q ss_pred eeEEEeCCCcEEEeee
Q 013293 291 HTMAVTSDGKLYGWGW 306 (446)
Q Consensus 291 h~~~lt~~G~v~~wG~ 306 (446)
+.++++.+|+||+-..
T Consensus 237 ~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADR 252 (270)
T ss_dssp EEEEECTTCCEEEEEG
T ss_pred eeEEECCCCCEEEEEC
Confidence 5677788888887553
No 60
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=68.99 E-value=66 Score=29.00 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=11.8
Q ss_pred ceEEEEecCCcEEEEeC
Q 013293 134 SHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 134 ~h~~~lt~~G~vy~wG~ 150 (446)
.|++++. +++||.+|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4565555 789999985
No 61
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=68.61 E-value=52 Score=29.41 Aligned_cols=18 Identities=6% Similarity=-0.178 Sum_probs=12.5
Q ss_pred CceEEEEecCCcEEEEeCC
Q 013293 133 DSHCLAVTVEGEVQSWGRN 151 (446)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~n 151 (446)
..|++++. +++||.+|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 35555554 7899999853
No 62
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=68.57 E-value=72 Score=29.28 Aligned_cols=219 Identities=13% Similarity=0.176 Sum_probs=114.8
Q ss_pred CceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEE--EEeCCCeEEEEEcCCcEEEEeCCCCCCcCC
Q 013293 133 DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGL 210 (446)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~ 210 (446)
....+++|.+|.|--.-...+.....+... ...+..-++..+.. +..+.++.+++|+.|++|.+-....-..+.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g----~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKG----LSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCC----EECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCC----ceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 345788999999876654433221111000 00111112223333 455677899999999999885433211111
Q ss_pred CCCCCcccceeeeeecCceEEEEEec-----CceEEEEeCCCCEEEeeCCCCCCC-CCCCCCCceeeEEecccCCCcEEE
Q 013293 211 GDRNDRLIPEKVATVDREKMVMVACG-----WRHTISVSSSGRLYSYGWSKYGQL-GHGDFKDHLVPCQLEALRESFISQ 284 (446)
Q Consensus 211 ~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~~s~~l~~~G~vy~~G~n~~gql-G~~~~~~~~~p~~v~~~~~~~i~~ 284 (446)
.... ......+....+++|+.+... ..+.+++|++|.++..-..++-.. +.+ ..-..+. .+..+..
T Consensus 84 ~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G-----~~~i~L~--~~d~lv~ 155 (312)
T 1suu_A 84 ASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG-----VIVIKLN--DKDFVTS 155 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----C-----EECBCCC--TTCCEEE
T ss_pred cCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc-----EEEEecC--CCCEEEE
Confidence 1100 011112333345667776554 356889999999998865544211 111 0011111 1223443
Q ss_pred E--ecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEe--cCCeEEEEECCCCEEEEeCCC
Q 013293 285 I--SGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISC--GWRHTLAVTERQNVFSWGRGT 360 (446)
Q Consensus 285 I--a~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~--G~~h~~al~~~g~v~~wG~n~ 360 (446)
+ ..+..+.+++|++|.++-+-....-..|... .--..+.+..+..|+.+.. ...+.++++++|.....--++
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~----~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT----QGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB----CCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC----CCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 2 2456778899999999888766543333211 1112233444556666543 345678888999877776666
Q ss_pred CCCCCCC
Q 013293 361 NGQLGHG 367 (446)
Q Consensus 361 ~gqLG~g 367 (446)
+-..+.|
T Consensus 232 ~~~~~R~ 238 (312)
T 1suu_A 232 ISELKRG 238 (312)
T ss_dssp SCBCCTT
T ss_pred hcccCCC
Confidence 6555544
No 63
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=68.23 E-value=84 Score=29.92 Aligned_cols=261 Identities=11% Similarity=0.101 Sum_probs=110.7
Q ss_pred EEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC---------CceEEEEecCC
Q 013293 73 IVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---------DSHCLAVTVEG 143 (446)
Q Consensus 73 i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G---------~~h~~~lt~~G 143 (446)
+..|..|....++++.|...||+...-. .+.-++... ..-..+..-....+..|..+ .-+.++++.||
T Consensus 72 ~~~I~vG~~P~va~spDG~~lyVan~~~-~r~~~G~~~--~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 72 IGMIDGGFLPNPVVADDGSFIAHASTVF-SRIARGERT--DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEEECSSCEEEECTTSSCEEEEEEEE-EETTEEEEE--EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEECCCCCcEEECCCCCEEEEEcccc-cccccCCCC--CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 4455666555577887733577753100 000000000 01112222223345556554 35678999888
Q ss_pred c-EEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceee
Q 013293 144 E-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (446)
Q Consensus 144 ~-vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v 222 (446)
+ +|.......+.+..-+......-..+. +.+. ..-.-.|..-.++++.||++........+.+.. .......|...
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~ 225 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDE 225 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTS
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-eecceeccccc
Confidence 6 676543222222211111111111111 1111 111233555566889999988877655444411 00000001000
Q ss_pred eeecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCC-CcEEEEecCCCeeEEEeC-CCc
Q 013293 223 ATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE-SFISQISGGWRHTMAVTS-DGK 300 (446)
Q Consensus 223 ~~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~-~~i~~Ia~G~~h~~~lt~-~G~ 300 (446)
+.+. .. .......+.++++.+|+||..-..... .....+..+ +.. ........+....++++. .++
T Consensus 226 ~~~~--~~-~~~~~dG~~~~vs~~g~V~v~d~~~~~-------~~v~~~~~~--~~~~~~~~g~~p~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 226 FLIN--HP-AYSQKAGRLVWPTYTGKIHQIDLSSGD-------AKFLPAVEA--LTEAERADGWRPGGWQQVAYHRALDR 293 (386)
T ss_dssp CBCS--CC-EEETTTTEEEEEBTTSEEEEEECTTSS-------CEECCCEES--SCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred cccc--cc-eeEcCCCcEEEEeCCCEEEEEECCCCc-------ceeecceec--cccccccccccCCCcceeeECCCCCe
Confidence 0000 01 111223356778888899987421100 000011110 000 000012234445566654 456
Q ss_pred EEEeeeCCCCCCcCCCCCC-ccccEEEecCCCCcEEEEEecCC-eEEEEECCCC--EEE
Q 013293 301 LYGWGWNKFGQVGVGDNVD-HCSPVQVKFPLDQKVVQISCGWR-HTLAVTERQN--VFS 355 (446)
Q Consensus 301 v~~wG~n~~GqLG~g~~~~-~~~p~~v~~~~~~~i~~i~~G~~-h~~al~~~g~--v~~ 355 (446)
+|+--... ++ +.... -..-..+.....+.+..|..|.. +.++++.|++ +|+
T Consensus 294 lyV~~~~~-~~---~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 294 IYLLVDQR-DE---WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp EEEEEEEC-CT---TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEE
T ss_pred EEEEeccc-cc---cccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEE
Confidence 77742111 11 11111 12233445555666777877753 4899999987 554
No 64
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.93 E-value=77 Score=29.37 Aligned_cols=220 Identities=11% Similarity=0.037 Sum_probs=115.6
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceee--eeecccCCCCEEEEEcCC-----ceEEEEecCCcEEEE
Q 013293 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTP--LPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSW 148 (446)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p--~~v~~l~~~~I~~I~~G~-----~h~~~lt~~G~vy~w 148 (446)
.+....+.+++++. |++|..-....=..+.. ..-.| ..+....+++|+.+.+.. ...+++|++|.+.-.
T Consensus 49 ~~~t~d~ll~fT~~-Gr~y~~~~~~lp~~~r~---~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~ 124 (327)
T 3uc1_A 49 VCSTHDLILFFTTQ-GRVYRAKAYDLPEASRT---ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKS 124 (327)
T ss_dssp EEETTSEEEEEETT-SEEEEEEGGGSCBCCSS---SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEE
T ss_pred EeCCCCEEEEEeCC-CeEEEEEHHHCcCCCcc---CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEe
Confidence 34556667778888 99999874433222111 11111 112333577888886643 568899999998877
Q ss_pred eCCCCCCcCCCCCCCcccceeeccc-CCccEEE--EEeCCCeEEEEEcCCcEEEEeCC--CCCCcCCCCCCCcccceeee
Q 013293 149 GRNQNGQLGLGTTEDSLVPQKLQAF-EGVSIKM--VAAGAEHSVAVAEDGELYGWGWG--RYGNLGLGDRNDRLIPEKVA 223 (446)
Q Consensus 149 G~n~~gqlg~~~~~~~~~p~~v~~~-~~~~i~~--ia~G~~hs~~lt~~G~vy~~G~n--~~gqlG~~~~~~~~~p~~v~ 223 (446)
-...+-.... .-.....+ ++..++. +..+.++.+++|++|++|.+-.. .--.+|....... .+.
T Consensus 125 ~l~~~~~~~r-------~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~----~i~ 193 (327)
T 3uc1_A 125 KLTDFDSNRS-------GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ----GMR 193 (327)
T ss_dssp EGGGGCCCCS-------SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE----SSC
T ss_pred EHHHhhcccc-------CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee----eec
Confidence 6444311100 00111111 2333443 34467789999999999988766 4333332221111 122
Q ss_pred eecCceEEEEEecC--ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEE--EecCCCeeEEEeCCC
Q 013293 224 TVDREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDG 299 (446)
Q Consensus 224 ~~~~~~i~~ia~G~--~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--Ia~G~~h~~~lt~~G 299 (446)
...++.|+.+..-. .+.+++|++|.+.-.-..++-..+.+... ..-.++..- +..+.. +..+....+++|++|
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G--~~~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG--VLTVMYDRR-RGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC--EESSCCCTT-TCSEEEEEEECTTCEEEEEEGGG
T ss_pred CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc--EEEEEecCC-CCeEEEEEEeCCCccEEEEcCCC
Confidence 23456677765543 46788899997766543333322211100 000001000 111322 234667889999999
Q ss_pred cEEEeeeCCCCCCc
Q 013293 300 KLYGWGWNKFGQVG 313 (446)
Q Consensus 300 ~v~~wG~n~~GqLG 313 (446)
++.-+-...--..|
T Consensus 271 ~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 271 GVIRTAARQVRKAG 284 (327)
T ss_dssp CEEEEEGGGSCBCC
T ss_pred eEEEEehhhccccC
Confidence 98887655443333
No 65
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=67.65 E-value=77 Score=29.22 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=93.0
Q ss_pred cEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC---CceEEEEecCCcEE
Q 013293 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQ 146 (446)
Q Consensus 72 ~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G---~~h~~~lt~~G~vy 146 (446)
.|..++...+ +.+.-..+ |.|..|-.... .+..........|..|+.. ....+....||.|.
T Consensus 141 ~V~~v~~spdg~~l~sgs~d-g~v~iwd~~~~------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKD-FSVKVWDLSQK------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEeCC-CeEEEEECCCC------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceE
Confidence 4677766543 33334456 89999954321 1111111123457777653 23455667889999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC---CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeee
Q 013293 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (446)
Q Consensus 147 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G---~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~ 223 (446)
.|-......+. ..........+..++.. ....+.-..++.|+.|-.... .+....
T Consensus 208 ~wd~~~~~~~~----------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------------~~~~~~ 265 (357)
T 4g56_B 208 LWDTRKPKPAT----------RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP------------DSAQTS 265 (357)
T ss_dssp ECCTTSSSCBC----------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG------------GGCEEE
T ss_pred EEECCCCceee----------eeeeccccccccchhhhhcccceEEEeecccceeEEECCCC------------cEeEEE
Confidence 99543211110 00001112346666653 222333467899999953221 111111
Q ss_pred eecCceEEEEEecC---ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC---CCeeEEEeC
Q 013293 224 TVDREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG---WRHTMAVTS 297 (446)
Q Consensus 224 ~~~~~~i~~ia~G~---~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~ 297 (446)
......|..++... ...+.-..||.|+.|=... ++ ....+. -...|..|+.. ....+--..
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~----------~~~~~~--H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SE----------VFRDLS--HRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CE----------EEEECC--CSSCEEEEEECSSSTTEEEEEET
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-Cc----------EeEECC--CCCCEEEEEEeCCCCCEEEEEcC
Confidence 12234566666542 3344456889999994221 11 111111 12347777754 222333457
Q ss_pred CCcEEEeeeCCC
Q 013293 298 DGKLYGWGWNKF 309 (446)
Q Consensus 298 ~G~v~~wG~n~~ 309 (446)
||.|+.|=....
T Consensus 333 Dg~v~iW~~~~~ 344 (357)
T 4g56_B 333 DHKVLHHHLPSE 344 (357)
T ss_dssp TSCEEEEECC--
T ss_pred CCeEEEEECCCC
Confidence 899999975543
No 66
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=66.93 E-value=88 Score=29.62 Aligned_cols=200 Identities=14% Similarity=0.115 Sum_probs=95.5
Q ss_pred eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC---CceEEEEecCCcEEEEeCCCCCCcCC
Q 013293 82 HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGL 158 (446)
Q Consensus 82 ~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G---~~h~~~lt~~G~vy~wG~n~~gqlg~ 158 (446)
+.+.-..+ |.|..|-.+...... ....+..........|..|+.. ....+....+|.|+.|-.......
T Consensus 196 ~l~s~~~d-g~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-- 267 (430)
T 2xyi_A 196 YLLSASDD-HTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-- 267 (430)
T ss_dssp EEEEECTT-SCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--
T ss_pred eEEEEeCC-CeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--
Confidence 33444455 999999765432110 1111111111223457777763 344556678999999976542100
Q ss_pred CCCCCcccceeecccCCccEEEEEeCC--C-eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEe
Q 013293 159 GTTEDSLVPQKLQAFEGVSIKMVAAGA--E-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC 235 (446)
Q Consensus 159 ~~~~~~~~p~~v~~~~~~~i~~ia~G~--~-hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~ 235 (446)
.....+. .....|..++... . ..+.-..+|.|..|-....++ |..........|..|+.
T Consensus 268 ------~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~ 329 (430)
T 2xyi_A 268 ------KPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQW 329 (430)
T ss_dssp ------SCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSEEEECCSSCEEEEEE
T ss_pred ------cceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeEEeecCCCCEEEEEE
Confidence 0001111 1223466666543 2 244456789999997543221 11111112345666665
Q ss_pred cCc---eEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEeccc--CCCcEEEEecCCC---eeEEEeCCCcEEEeeeC
Q 013293 236 GWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISGGWR---HTMAVTSDGKLYGWGWN 307 (446)
Q Consensus 236 G~~---~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~Ia~G~~---h~~~lt~~G~v~~wG~n 307 (446)
... ..+.-..+|.|..|-....+..-.........|..+..+ ....|..++.... ..+....+|.|..|-..
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 432 344556788888886544221100000000001111111 1234666664433 34455678888888754
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=66.27 E-value=1.2e+02 Score=31.14 Aligned_cols=231 Identities=13% Similarity=0.093 Sum_probs=113.4
Q ss_pred CCEEEEEecCCceEE--EEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCEEE
Q 013293 19 RPVLLISAGASHSVA--LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVY 94 (446)
Q Consensus 19 ~~i~~i~~G~~~~~~--l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~g~v~ 94 (446)
.+|..|+.-.....+ -..+|.|..|-..... ....+... ...|..++.. ....+....+ |.|+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~ 80 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------EVRSIQVT-ETPVRAGKFIARKNWIIVGSDD-FRIR 80 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------EEEEEECC-SSCEEEEEEEGGGTEEEEEETT-SEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------eEEEEecC-CCcEEEEEEeCCCCEEEEEeCC-CeEE
Confidence 456666655444333 3368888888543211 11112211 1245555543 3445555566 9999
Q ss_pred EEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC--ceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecc
Q 013293 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (446)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~ 172 (446)
.|-...... ...+. .....|..++... .+.+..+.||.|..|-..... .....+..
T Consensus 81 vw~~~~~~~-----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~~ 138 (814)
T 3mkq_A 81 VFNYNTGEK-----------VVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------ALEQTFEG 138 (814)
T ss_dssp EEETTTCCE-----------EEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----------EEEEEEEC
T ss_pred EEECCCCcE-----------EEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----------eEEEEEcC
Confidence 996543211 11111 1233566666543 345566778999999643211 01111111
Q ss_pred cCCccEEEEEeCC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEe----cCceEEEEeC
Q 013293 173 FEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC----GWRHTISVSS 245 (446)
Q Consensus 173 ~~~~~i~~ia~G~---~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~----G~~~s~~l~~ 245 (446)
....|..++... ...+.-..+|.|+.|-..... ....+.......+..++. .....+.-..
T Consensus 139 -~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 139 -HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp -CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred -CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 123566666543 345556778999999643210 011111111122333333 3344555567
Q ss_pred CCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCC--CeeEEEeCCCcEEEeeeCC
Q 013293 246 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDGKLYGWGWNK 308 (446)
Q Consensus 246 ~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~v~~wG~n~ 308 (446)
+|.|+.|-... ......+.. ....|..++... ...+....+|.|+.|-...
T Consensus 207 dg~i~~~d~~~-----------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 207 DLTIKIWDYQT-----------KSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp TSEEEEEETTT-----------TEEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEECCC-----------CcEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 88899885321 111222221 122366655433 3445556789999996543
No 68
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=65.95 E-value=30 Score=33.10 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=43.6
Q ss_pred EEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeC
Q 013293 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGW 202 (446)
Q Consensus 126 I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~ 202 (446)
|.+|++ +...+++.++|.|..|-.....+.. ....++ ..+.++.+-....++++.+|.|+.|-.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~-----------~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR-----------TVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE-----------EEEECS-SCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC-----------ccceee-cceeeEEecCCCEEEEECCCCEEEEEc
Confidence 999999 7778888899999999755432110 111111 235566666656788899999999953
No 69
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=65.44 E-value=83 Score=28.85 Aligned_cols=218 Identities=11% Similarity=0.016 Sum_probs=112.0
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC-----CceEEEEecCCcEEEEeC
Q 013293 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G-----~~h~~~lt~~G~vy~wG~ 150 (446)
++...++.+++++. |.+|..-..+.-..+..... ......+....+++|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~-G~~~~~~~~~ip~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNE-GKLYLINAYEIKDSSRASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETT-SEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CeEEEEEHHHCCCCCccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 44566778888888 99999875443221111100 001112233356778877553 456899999999998875
Q ss_pred CCCCCcCCCCCCCcccceeeccc-CCccEEEEE--eCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecC
Q 013293 151 NQNGQLGLGTTEDSLVPQKLQAF-EGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDR 227 (446)
Q Consensus 151 n~~gqlg~~~~~~~~~p~~v~~~-~~~~i~~ia--~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~ 227 (446)
.++-... .. -.....+ ++..++.+. .+..+.+++|++|.++-+-.++.-..|....... .+....+
T Consensus 132 ~~~~~~r-~~------G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~----~i~L~~~ 200 (312)
T 1suu_A 132 TDFKAVK-SR------GVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVC----GMKLKEG 200 (312)
T ss_dssp GGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEE----CCCCCTT
T ss_pred HHhhccC-CC------cEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeE----eEEeCCC
Confidence 5431110 00 0111112 233455443 3567889999999999887655333332211111 1111123
Q ss_pred ceEEEEEe--cCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEE--EecCCCeeEEEeCCCcEEE
Q 013293 228 EKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKLYG 303 (446)
Q Consensus 228 ~~i~~ia~--G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--Ia~G~~h~~~lt~~G~v~~ 303 (446)
..|+.+.. ...+.++++++|.+...-.+++-..+.+...... . .+..-.+..+.. ........+++++.|.+.-
T Consensus 201 d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~-~-~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r 278 (312)
T 1suu_A 201 DLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTS-Y-KKSDKKAGSVVDAIAVSEDDEILLVSKRSKALR 278 (312)
T ss_dssp CCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC-S-CTTCTTTCSEEEEEEECTTCEEEEEETTCEEEE
T ss_pred CEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEEe-e-EccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 45555433 3456788899998777776666554443211100 0 000001122332 2235566677788887665
Q ss_pred eeeCC
Q 013293 304 WGWNK 308 (446)
Q Consensus 304 wG~n~ 308 (446)
.-.+.
T Consensus 279 ~~~~~ 283 (312)
T 1suu_A 279 TVAGK 283 (312)
T ss_dssp EEGGG
T ss_pred EEccc
Confidence 44443
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=65.31 E-value=78 Score=28.47 Aligned_cols=258 Identities=10% Similarity=0.049 Sum_probs=120.3
Q ss_pred CCCEEEEEecCC------ceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecC---CeeEEEEc
Q 013293 18 FRPVLLISAGAS------HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSE 88 (446)
Q Consensus 18 ~~~i~~i~~G~~------~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~---~~~~~l~~ 88 (446)
...|..++.-.. ..+.-..||.|..|-..... ....+.. ....|..++... ...+....
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~ 136 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----------CIKHYVG-HGNAINELKFHPRDPNLLLSVSK 136 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----------EEEEEES-CCSCEEEEEECSSCTTEEEEEET
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----------EeeeecC-CCCcEEEEEECCCCCCEEEEEeC
Confidence 345666665444 23334478888888543211 1111221 224677777643 44455556
Q ss_pred CCCEEEEEeCCCCCCcCCCCCCCceeeeeec--ccCCCCEEEEEcC--CceEEEEecCCcEEEEeCCCCCCcC-------
Q 013293 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLG------- 157 (446)
Q Consensus 89 ~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~--~l~~~~I~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlg------- 157 (446)
+ |.|+.|-..... ....+. ......|..++.. ..+.+....||.|+.|-......+.
T Consensus 137 d-g~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 137 D-HALRLWNIQTDT-----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp T-SCEEEEETTTTE-----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred C-CeEEEEEeecCe-----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 6 999999643210 111111 1234467777754 3456666789999999754321100
Q ss_pred CCCCC--------Ccccce-eecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeec--
Q 013293 158 LGTTE--------DSLVPQ-KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD-- 226 (446)
Q Consensus 158 ~~~~~--------~~~~p~-~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~-- 226 (446)
..... ....|. .........|..++......+.-..+|.|..|-.....+.-............+..+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 00000 000000 0000022245555544667777778999999975432221100000111111111111
Q ss_pred CceEEEEEe--c--CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccC-CCcEEEEecC--CCeeEEEeCCC
Q 013293 227 REKMVMVAC--G--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR-ESFISQISGG--WRHTMAVTSDG 299 (446)
Q Consensus 227 ~~~i~~ia~--G--~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~-~~~i~~Ia~G--~~h~~~lt~~G 299 (446)
...|..++. . ..+.+.-..+|.|+.|-......+ ......+.... ...|..++.. ..+.+.-..||
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 112222222 2 344555677889999864332111 01111222211 2346666654 33455556788
Q ss_pred cEEEeee
Q 013293 300 KLYGWGW 306 (446)
Q Consensus 300 ~v~~wG~ 306 (446)
.|+.|-.
T Consensus 358 ~i~iwd~ 364 (366)
T 3k26_A 358 SIWRWDR 364 (366)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9988853
No 71
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=65.04 E-value=82 Score=28.59 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=14.9
Q ss_pred ecCCceEEEEeCCeEEEEeCCC
Q 013293 26 AGASHSVALLSGNIVCSWGRGE 47 (446)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~ 47 (446)
.+.-..++++.+|.+|+.+...
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCC
Confidence 3444567777888888776654
No 72
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=64.09 E-value=75 Score=27.82 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=11.5
Q ss_pred eEEEEeCCCCEEEeeC
Q 013293 239 HTISVSSSGRLYSYGW 254 (446)
Q Consensus 239 ~s~~l~~~G~vy~~G~ 254 (446)
..++++.+|++|.-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4577777888887654
No 73
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=62.70 E-value=63 Score=28.79 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=12.1
Q ss_pred CCeEEEEEcCCcEEEEeC
Q 013293 185 AEHSVAVAEDGELYGWGW 202 (446)
Q Consensus 185 ~~hs~~lt~~G~vy~~G~ 202 (446)
..|++++. +++||++|-
T Consensus 104 ~~~~~~~~-~~~lyv~GG 120 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGG 120 (301)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEEcc
Confidence 35666555 789999983
No 74
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=62.57 E-value=86 Score=27.99 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=12.2
Q ss_pred CCeeEEEeCCCcEEEeee
Q 013293 289 WRHTMAVTSDGKLYGWGW 306 (446)
Q Consensus 289 ~~h~~~lt~~G~v~~wG~ 306 (446)
..|++++. +++||++|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 45666665 778999984
No 75
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=62.45 E-value=57 Score=29.17 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=11.8
Q ss_pred ceEEEEecCCcEEEEeC
Q 013293 134 SHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 134 ~h~~~lt~~G~vy~wG~ 150 (446)
.|++++. ++++|.+|-
T Consensus 101 ~~~~~~~-~~~iyv~GG 116 (302)
T 2xn4_A 101 TLGAAVL-NGLLYAVGG 116 (302)
T ss_dssp SCEEEEE-TTEEEEEEE
T ss_pred ceEEEEE-CCEEEEEcC
Confidence 4666654 789999984
No 76
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=60.40 E-value=1.1e+02 Score=28.64 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=73.6
Q ss_pred CCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCC--CCCcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCC
Q 013293 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL--DGHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGR 103 (446)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~--~~~~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gq 103 (446)
....+++--|+.||.|=.... + ...+-.+ ....|..|+...+ +.+.-..| |.|..|-....
T Consensus 115 ~~n~lAvgld~tV~lWd~~tg-~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-g~v~iWd~~~~-- 179 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASSG-D-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQ-- 179 (420)
T ss_dssp TTSEEEEEETTEEEEEETTTC-C-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTT--
T ss_pred CCCEEEEEeCCEEEEEECCCC-C-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECC-CeEEEEEcCCC--
Confidence 445777788999999954321 1 1111111 1234777776543 33334556 99999964331
Q ss_pred cCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEE-
Q 013293 104 LGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA- 182 (446)
Q Consensus 104 lG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia- 182 (446)
.+.....-....+..++......+.-..++.++.|-....... ...+.. ....+..+.
T Consensus 180 ----------~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~----------~~~~~~-h~~~~~~~~~ 238 (420)
T 4gga_A 180 ----------KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH----------VATLSG-HSQEVCGLRW 238 (420)
T ss_dssp ----------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE----------EEEEEC-CSSCEEEEEE
T ss_pred ----------cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeeccccee----------eEEecc-cccceeeeee
Confidence 1111111123457777766666666677888888864322110 011111 111233333
Q ss_pred -eCCCeEEEEEcCCcEEEEeCC
Q 013293 183 -AGAEHSVAVAEDGELYGWGWG 203 (446)
Q Consensus 183 -~G~~hs~~lt~~G~vy~~G~n 203 (446)
......+....||.+..|-..
T Consensus 239 ~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 239 APDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEESS
T ss_pred cCCCCeeeeeeccccceEEeec
Confidence 334455666788999988643
No 77
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=59.92 E-value=1.1e+02 Score=28.29 Aligned_cols=230 Identities=9% Similarity=-0.012 Sum_probs=114.5
Q ss_pred CCCEEE--EEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC-----CCeEEEEEcCC
Q 013293 123 SLRVKQ--IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDG 195 (446)
Q Consensus 123 ~~~I~~--I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~hs~~lt~~G 195 (446)
+..+.. ++....+.+++|+.|++|..-..+--..+....- ......+..-++++|+.+..- ..+.+++|++|
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G-~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG-QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC-EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC-cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCC
Confidence 334443 4567788999999999999986554333321111 111122222246677765443 23578899999
Q ss_pred cEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEE--EEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEE
Q 013293 196 ELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVM--VACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQ 273 (446)
Q Consensus 196 ~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~ 273 (446)
.+.-.-...+-.... . .--.-+....+..++. +..+..+.++++++|+++.+-.++--.+|.... ...
T Consensus 117 ~iKrt~l~e~~~~~r-~----~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~-----GV~ 186 (323)
T 1wp5_A 117 MVKKTELKHYKAQRY-S----KPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA-----GVK 186 (323)
T ss_dssp EEEEEEGGGGCCSCC-S----SCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC-----CEE
T ss_pred eEEEeEHHHhhhccc-c----CceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc-----CEE
Confidence 888665433221110 0 0000011112233333 234667889999999999987765544443211 111
Q ss_pred e-cccCCCcEEEEec--CCC-eeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCC-CCcEEEE--EecCCeEEE
Q 013293 274 L-EALRESFISQISG--GWR-HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQI--SCGWRHTLA 346 (446)
Q Consensus 274 v-~~~~~~~i~~Ia~--G~~-h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~i~~i--~~G~~h~~a 346 (446)
. ..-.+..|..+.. ... ..++++++|...-.-...+-.-+.+..- ...+. .+.. +..++.+ ..+.+..++
T Consensus 187 ~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-v~~~~--~~~~~~~~l~~~~~v~~~~~i~~ 263 (323)
T 1wp5_A 187 GMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-VVILR--ELKANPHRISGFVVAQDSDTIYL 263 (323)
T ss_dssp CCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-EECSC--CCSSSCCCEEEEEEECTTCEEEE
T ss_pred EEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-EECee--ecCCCCceEEEEEEeCCCCeEEE
Confidence 1 1112334554432 122 5666777776444333332211111100 00010 0111 2234432 335677889
Q ss_pred EECCCCEEEEeCCCCCCCCC
Q 013293 347 VTERQNVFSWGRGTNGQLGH 366 (446)
Q Consensus 347 l~~~g~v~~wG~n~~gqLG~ 366 (446)
++++|.+.-.--++--.+|.
T Consensus 264 it~~g~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 264 QTEKSFIETIKVGDIRFSDR 283 (323)
T ss_dssp EETTSCEEEEEGGGSCBCCS
T ss_pred EeCCCeEEEEEhhhcCccCc
Confidence 99999988776555555543
No 78
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=57.66 E-value=1.1e+02 Score=27.56 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.1
Q ss_pred ceEEEEeCCCCEEEeeC
Q 013293 238 RHTISVSSSGRLYSYGW 254 (446)
Q Consensus 238 ~~s~~l~~~G~vy~~G~ 254 (446)
.|+++. .+++||++|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 466665 5889999984
No 79
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=56.97 E-value=1.3e+02 Score=28.34 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=120.0
Q ss_pred cEEEEEecCC--eeEEE-EcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC---CceEEEEecCCcE
Q 013293 72 EIVSVTCGAD--HTTAY-SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEV 145 (446)
Q Consensus 72 ~i~~i~~G~~--~~~~l-~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G---~~h~~~lt~~G~v 145 (446)
.|..++.... ..++. ..+ |.|+.|-........ .......+..........|..++.. ..+.+.-..+|.|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPS-SDVLVFDYTKHPSKP--EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSS-SCEEEEEGGGSCSSC--CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred cEEEEEECCCCCcEEEEECCC-CcEEEEECCCccccc--CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 3555555443 23333 345 899999764421100 0000011111111122245555443 2356666778999
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC---CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceee
Q 013293 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (446)
Q Consensus 146 y~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G---~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v 222 (446)
..|-.+...... ....+..........|..++.. ....+....+|.|+.|-...... ..+...
T Consensus 207 ~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~~~ 272 (430)
T 2xyi_A 207 CLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPSHT 272 (430)
T ss_dssp EEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCSEE
T ss_pred EEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------CcceeE
Confidence 999865522110 0011111111122357777653 34455566899999996543210 011111
Q ss_pred eeecCceEEEEEecCc---eEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCC---CeeEEEe
Q 013293 223 ATVDREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVT 296 (446)
Q Consensus 223 ~~~~~~~i~~ia~G~~---~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~---~h~~~lt 296 (446)
.......|..|+.... ..+.-..+|.|..|-.....+. ...+. .....|..|+... ...+.-.
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~----------~~~~~-~h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------LHSFE-SHKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------SEEEE-CCSSCEEEEEECSSCTTEEEEEE
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC----------eEEee-cCCCCEEEEEECCCCCCEEEEEe
Confidence 1122345666655432 2344567888988865432210 01111 1123366666543 2244455
Q ss_pred CCCcEEEeeeCCCCCCcCCCCCCccccEEEec--CCCCcEEEEEecCC---eEEEEECCCCEEEEeCC
Q 013293 297 SDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF--PLDQKVVQISCGWR---HTLAVTERQNVFSWGRG 359 (446)
Q Consensus 297 ~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~--~~~~~i~~i~~G~~---h~~al~~~g~v~~wG~n 359 (446)
.+|.|..|-....+..-.........|..+.. .....|..++-... ..+....+|.|..|=-+
T Consensus 342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 78999999766533211000000001122221 12335666665443 34455678888888643
No 80
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=56.30 E-value=77 Score=25.46 Aligned_cols=108 Identities=11% Similarity=0.156 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCC-ceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC-CCeEEEEEcCCcEEE
Q 013293 122 HSLRVKQIACGD-SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYG 199 (446)
Q Consensus 122 ~~~~I~~I~~G~-~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G-~~hs~~lt~~G~vy~ 199 (446)
.+.+.+++-|-. .+.+-+..||.|-.-.... +...--.+.... ..++.|.|- ..+.+++..+|+||.
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv~-~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPEG-NGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEE-TTEEEEEETTTTEEEEECTTSBEEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEcc-CCEEEEEEecCCEEEeECCCCCEee
Confidence 355788888875 6777888899998543221 111111122111 247778775 577888999999996
Q ss_pred EeCCCCCCcCCCCCCCcccceeeeeecCc--eEEEEEecCceEEEEeCCCCEEEe
Q 013293 200 WGWGRYGNLGLGDRNDRLIPEKVATVDRE--KMVMVACGWRHTISVSSSGRLYSY 252 (446)
Q Consensus 200 ~G~n~~gqlG~~~~~~~~~p~~v~~~~~~--~i~~ia~G~~~s~~l~~~G~vy~~ 252 (446)
--. ........++...... -+..+..| ..++++.+|++|.-
T Consensus 97 s~~----------~t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlygs 139 (142)
T 3p6j_A 97 TRD----------RSDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDGT 139 (142)
T ss_dssp ECC----------TTCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEEE
T ss_pred ccc----------CCCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCccC
Confidence 421 1111222233222222 23333334 47999999999963
No 81
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=56.00 E-value=1.9e+02 Score=29.89 Aligned_cols=196 Identities=11% Similarity=0.112 Sum_probs=100.2
Q ss_pred cEEEEEecC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeeccc--CCCCEEEEEcC----CceEEEEecCC
Q 013293 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (446)
Q Consensus 72 ~i~~i~~G~--~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l--~~~~I~~I~~G----~~h~~~lt~~G 143 (446)
.|..++... .+.+.-..+ |.|..|-... . ....+..+ ....|..++.. ....+....||
T Consensus 11 ~V~~l~~s~dg~~latg~~d-g~I~vwd~~~----------~--~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEG----------E--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT-TEEEEEEEET----------T--EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eeEEEEECCCCCeEEEEECC-CcEEEEecCC----------C--CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 355555432 233334456 9999995321 0 11222222 23468788764 45666778899
Q ss_pred cEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC----CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccc
Q 013293 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (446)
Q Consensus 144 ~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G----~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p 219 (446)
.|+.|-.... ...+..........|..++.. ....+.-..||.|+.|-....... ..
T Consensus 78 ~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---------~~ 138 (753)
T 3jro_A 78 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SP 138 (753)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------CC
T ss_pred eEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------ce
Confidence 9999974321 000111111123357777665 345666778999999964332110 01
Q ss_pred eeeeeecCceEEEEEec---------------CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEE
Q 013293 220 EKVATVDREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ 284 (446)
Q Consensus 220 ~~v~~~~~~~i~~ia~G---------------~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 284 (446)
..+ ......|..++.. ....+.-..+|.|+.|-..... ....+..........|..
T Consensus 139 ~~~-~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 139 III-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRD 209 (753)
T ss_dssp EEE-ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEE
T ss_pred eEe-ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcEEE
Confidence 111 1122345555443 2345566778989888532210 111111111112234777
Q ss_pred EecCCC-----eeEEEeCCCcEEEeeeCC
Q 013293 285 ISGGWR-----HTMAVTSDGKLYGWGWNK 308 (446)
Q Consensus 285 Ia~G~~-----h~~~lt~~G~v~~wG~n~ 308 (446)
++.... ..+.-..||.|+.|-...
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 765533 444556789999997654
No 82
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=55.92 E-value=1.1e+02 Score=27.30 Aligned_cols=200 Identities=12% Similarity=0.101 Sum_probs=93.6
Q ss_pred CcEEEEEecCCe--eEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEE
Q 013293 71 HEIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQ 146 (446)
Q Consensus 71 ~~i~~i~~G~~~--~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy 146 (446)
..|..++...+. .+.-..+ |.|+.|-..... ....+.. ....|..++.. ..+.+....||.|+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKD-SSASVWYSLNGE-----------RLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESS-SCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCC-CEEEEEeCCCch-----------hhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 357777765443 3333456 899999543211 1111111 23457777654 44566677899999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC--CCeEEEEEcC-----CcEEEEeCCCCCCcCCCCCCCcccc
Q 013293 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAED-----GELYGWGWGRYGNLGLGDRNDRLIP 219 (446)
Q Consensus 147 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~-----G~vy~~G~n~~gqlG~~~~~~~~~p 219 (446)
.|-...... ...+. ....|..++.. ....++...+ |.|+.|-.........-........
T Consensus 100 iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 100 LWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 997543211 01111 12245554443 3344445555 8888886433221110000000000
Q ss_pred eeeeeec-CceEEEEEec--CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC--CCeeEE
Q 013293 220 EKVATVD-REKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMA 294 (446)
Q Consensus 220 ~~v~~~~-~~~i~~ia~G--~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~ 294 (446)
..+.... ...+..++.. ....++-..+|.|+.|-....+ .....+. .....|..++.. ....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~l~~ 235 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----------EYVDSID-LHEKSISDMQFSPDLTYFIT 235 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----------EEEEEEE-CCSSCEEEEEECTTSSEEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----------EeEEEEe-cCCCceeEEEECCCCCEEEE
Confidence 0111110 0134444433 3345556678888888543211 1111111 122336666543 334444
Q ss_pred EeCCCcEEEeeeC
Q 013293 295 VTSDGKLYGWGWN 307 (446)
Q Consensus 295 lt~~G~v~~wG~n 307 (446)
...+|.|+.|-..
T Consensus 236 ~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 236 SSRDTNSFLVDVS 248 (369)
T ss_dssp EETTSEEEEEETT
T ss_pred ecCCceEEEEECC
Confidence 5678888888643
No 83
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=52.40 E-value=1.8e+02 Score=28.48 Aligned_cols=189 Identities=13% Similarity=0.049 Sum_probs=98.2
Q ss_pred CCCEEEEEecCCc---eEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCC--CcEEEEEecCC---eeEEEEcC
Q 013293 18 FRPVLLISAGASH---SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGAD---HTTAYSES 89 (446)
Q Consensus 18 ~~~i~~i~~G~~~---~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~--~~i~~i~~G~~---~~~~l~~~ 89 (446)
...|..++.-... .+.-..||.|..|-.... .....+..... ..|..++...+ ..+....+
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-----------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-----------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-----------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 4456666655543 333447888888853221 01111111111 15777776544 44445566
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCceeeeeecc---cCCCCEEEEEc-CCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcc
Q 013293 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA---LHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (446)
Q Consensus 90 ~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~---l~~~~I~~I~~-G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~ 165 (446)
|.|+.|-..... ....+.. .....|..++. ...+.+....||.|..|-......+
T Consensus 229 -g~i~vwd~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--------- 287 (615)
T 1pgu_A 229 -RKISCFDGKSGE-----------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV--------- 287 (615)
T ss_dssp -CCEEEEETTTCC-----------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE---------
T ss_pred -CeEEEEECCCCC-----------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE---------
Confidence 999999643211 1111101 22345766665 4455666677899999975431100
Q ss_pred cceeeccc---CCccEEEEEe-CCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEE
Q 013293 166 VPQKLQAF---EGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTI 241 (446)
Q Consensus 166 ~p~~v~~~---~~~~i~~ia~-G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~ 241 (446)
..+... ....+..+.. .....++...+|.|+.|-... ..+..........|..++. .. .+
T Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~-l~ 351 (615)
T 1pgu_A 288 --QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP-LI 351 (615)
T ss_dssp --EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-TE
T ss_pred --EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-cE
Confidence 001100 0112333322 556677778899999995322 1111111122356777777 66 56
Q ss_pred EEeCCCCEEEeeC
Q 013293 242 SVSSSGRLYSYGW 254 (446)
Q Consensus 242 ~l~~~G~vy~~G~ 254 (446)
.-..+|.|..|-.
T Consensus 352 ~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 352 SGSYDGRIMEWSS 364 (615)
T ss_dssp EEETTSCEEETTT
T ss_pred EECCCCeEEEEEc
Confidence 6678899999854
No 84
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=52.36 E-value=1.5e+02 Score=27.66 Aligned_cols=99 Identities=7% Similarity=-0.031 Sum_probs=49.2
Q ss_pred ceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCC-CCCcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCC
Q 013293 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL-DGHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGH 106 (446)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~-~~~~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~ 106 (446)
..+.-..||.|+.|-..... ....+... ....|..++.... +.+.-..+ |.|..|-... +
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~-~---- 246 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLE-----------RLQIIENSPRHGAVSSICIDEECCVLILGTTR-GIIDIWDIRF-N---- 246 (437)
T ss_dssp EEEEEETTSEEEEEETTTCC-----------EEEEEECCGGGCCEEEEEECTTSCEEEEEETT-SCEEEEETTT-T----
T ss_pred EEEEEeCCCeEEEEeCCCCe-----------eeEEEccCCCCCceEEEEECCCCCEEEEEcCC-CeEEEEEcCC-c----
Confidence 34444577888888643311 11111111 1235777776433 33444556 8999996432 1
Q ss_pred CCCCCceeeee-ecccCCCCEEEEEcC----Cc--eEEEEecCCcEEEEeCCC
Q 013293 107 GNSSDLFTPLP-IKALHSLRVKQIACG----DS--HCLAVTVEGEVQSWGRNQ 152 (446)
Q Consensus 107 ~~~~~~~~p~~-v~~l~~~~I~~I~~G----~~--h~~~lt~~G~vy~wG~n~ 152 (446)
.+.. +.......|..++.. .. ..+.-..||.|..|-...
T Consensus 247 -------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 247 -------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp -------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred -------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 1111 111122356666332 12 344445688899997543
No 85
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=50.76 E-value=1.7e+02 Score=27.77 Aligned_cols=109 Identities=8% Similarity=0.118 Sum_probs=63.6
Q ss_pred cCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEE
Q 013293 60 LSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139 (446)
Q Consensus 60 ~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~l 139 (446)
..|.....+.. |..|++ ....+++.++ +.|..|=.....+. ..+..+ ...+.++.+-....+++
T Consensus 79 ~~~~~~~~lp~--V~~l~f-d~~~L~v~~~-~~l~v~dv~sl~~~-----------~~~~~~-~~~v~~i~~~~p~~av~ 142 (388)
T 1xip_A 79 LTFKWEKEIPD--VIFVCF-HGDQVLVSTR-NALYSLDLEELSEF-----------RTVTSF-EKPVFQLKNVNNTLVIL 142 (388)
T ss_dssp CCCSEEEECTT--EEEEEE-ETTEEEEEES-SEEEEEESSSTTCE-----------EEEEEC-SSCEEEEEECSSEEEEE
T ss_pred ccceEEeeCCC--eeEEEE-CCCEEEEEcC-CcEEEEEchhhhcc-----------Ccccee-ecceeeEEecCCCEEEE
Confidence 34533333443 899999 6677777777 99999965443321 111111 23456666655568888
Q ss_pred ecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEE
Q 013293 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (446)
Q Consensus 140 t~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~ 200 (446)
+.||.|+.|-..... + . .+. ..|..++-...-.++...||++..|
T Consensus 143 ~~dG~L~v~dl~~~~-~---------~--~~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 143 NSVNDLSALDLRTKS-T---------K--QLA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp ETTSEEEEEETTTCC-E---------E--EEE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred ECCCCEEEEEccCCc-c---------c--ccc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 999999999654311 1 0 111 1466666555555555666766655
No 86
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=50.58 E-value=1.4e+02 Score=26.59 Aligned_cols=247 Identities=10% Similarity=-0.017 Sum_probs=121.4
Q ss_pred cEEEEEecC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--Cc-eEEEEecCCcEE
Q 013293 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DS-HCLAVTVEGEVQ 146 (446)
Q Consensus 72 ~i~~i~~G~--~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~-h~~~lt~~G~vy 146 (446)
.|..++... .+.+.-..+ |.|+.|-..... ....+..+. .....|..++.. .. +.+.-+.+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWD-GSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT-SEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 466665543 344444566 999999643221 001111111 223456666553 44 566777899999
Q ss_pred EEeC-CCCCCcCCCCCCCcccceeecc-cCCccEEEEEeC-CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeee
Q 013293 147 SWGR-NQNGQLGLGTTEDSLVPQKLQA-FEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (446)
Q Consensus 147 ~wG~-n~~gqlg~~~~~~~~~p~~v~~-~~~~~i~~ia~G-~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~ 223 (446)
.|-. .. +++ ..+.. .....|..++.. ....+....||.|+.|-...+..- .......+....
T Consensus 83 ~wd~~~~-~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~ 147 (342)
T 1yfq_A 83 KVDLIGS-PSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG---VIAVKNLNSNNT 147 (342)
T ss_dssp EECSSSS-SSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB---CEEEEESCSSSS
T ss_pred EEEeccC-Cce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc---cccccCCeeeEE
Confidence 9965 32 111 11211 012245555543 566666778999999953210000 000000000000
Q ss_pred eecCceEEEEEecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC---CCeeEEEeCCCc
Q 013293 224 TVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG---WRHTMAVTSDGK 300 (446)
Q Consensus 224 ~~~~~~i~~ia~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~ 300 (446)
. ....|..++......++-+.+|.|+.|-....+.. ............|..|+.. ....++-..+|.
T Consensus 148 ~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 148 K-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp S-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred e-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 0 22456677776677677788999999975431110 0111111122235655554 345555678899
Q ss_pred EEEeeeCCCCCCcCCCCCCccccEEEecCC--------CCcEEEEEec--CCeEEEEECCCCEEEEeC
Q 013293 301 LYGWGWNKFGQVGVGDNVDHCSPVQVKFPL--------DQKVVQISCG--WRHTLAVTERQNVFSWGR 358 (446)
Q Consensus 301 v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--------~~~i~~i~~G--~~h~~al~~~g~v~~wG~ 358 (446)
+..|-....+.- ........+.... ...|..++.. ....+.-..+|.|+.|=.
T Consensus 218 i~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 218 VAVEFFDDQGDD-----YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp EEEEECCTTCCS-----TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred EEEEEEcCCCcc-----cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 999876553100 0000011111110 1256666543 234455567899999954
No 87
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=50.32 E-value=1.6e+02 Score=27.23 Aligned_cols=193 Identities=11% Similarity=0.022 Sum_probs=94.8
Q ss_pred CcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEE
Q 013293 71 HEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQ 146 (446)
Q Consensus 71 ~~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy 146 (446)
..|..++...+ +.+.-..| |.|+.|-...... ...+.. ....|..++.. ....+....||.|.
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQD-MQLKIWSVKDGSN-----------PRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCC-----------CEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CccEEEEECCCCCEEEEEeCC-CeEEEEeCCCCcC-----------ceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 45777776533 44445566 9999996543211 111111 23356666553 34556667889999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecc--cCCccEEEEEe-----------------------CCCeEEEEEcCCcEEEEe
Q 013293 147 SWGRNQNGQLGLGTTEDSLVPQKLQA--FEGVSIKMVAA-----------------------GAEHSVAVAEDGELYGWG 201 (446)
Q Consensus 147 ~wG~n~~gqlg~~~~~~~~~p~~v~~--~~~~~i~~ia~-----------------------G~~hs~~lt~~G~vy~~G 201 (446)
.|-......+. .+.. .....|..++. ...+.++-..+|.|+.|-
T Consensus 207 iwd~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 207 LWECGTGTTIH-----------TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp EEETTTTEEEE-----------EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred EeECCCCceeE-----------EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence 99754321110 0000 00111222211 223445556788898885
Q ss_pred CCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCc---eEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccC
Q 013293 202 WGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR 278 (446)
Q Consensus 202 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~---~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~ 278 (446)
..... .+..+.......|..++.... ..+.-..+|.|+.|-.....++ ...+..-.
T Consensus 276 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~----------~~~~~~~~ 334 (420)
T 3vl1_A 276 VFSKE-----------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP----------VGEFLINE 334 (420)
T ss_dssp TTTCC-----------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------SEEEEEST
T ss_pred CCCCc-----------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc----------hhhhhccC
Confidence 42211 111111112245666665443 5566678899999964332110 11111112
Q ss_pred CCcEEEEecCCCeeEE-EeCCCcEEEeeeCC
Q 013293 279 ESFISQISGGWRHTMA-VTSDGKLYGWGWNK 308 (446)
Q Consensus 279 ~~~i~~Ia~G~~h~~~-lt~~G~v~~wG~n~ 308 (446)
...|..+.......++ -..||.|..|-...
T Consensus 335 ~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 335 GTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 2335555544443333 35688999998654
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=49.98 E-value=1.6e+02 Score=27.39 Aligned_cols=161 Identities=9% Similarity=0.023 Sum_probs=78.4
Q ss_pred CCCEEEEEecC-CceEEEE--eCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecC--CeeEEEEcCCCE
Q 013293 18 FRPVLLISAGA-SHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQ 92 (446)
Q Consensus 18 ~~~i~~i~~G~-~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~--~~~~~l~~~~g~ 92 (446)
...|.+|+... ....+++ .||.|.+|-..... ......+..... -...|..++... ...+....| |.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d-g~ 134 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII------VGEVYSSSLTYD-CSSTVTQITMIPNFDAFAVSSKD-GQ 134 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH------TTCCCSCSEEEE-CSSCEEEEEECTTSSEEEEEETT-SE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccc------cCcccceeeecc-CCCCEEEEEEeCCCCEEEEEeCC-CE
Confidence 45677777766 4333333 67888888532200 000011111111 123577777644 344445566 99
Q ss_pred EEEEeCC--CCCCcCCCCCCCceeeeeeccc------CCCCEEEEEc----CCceEEEEecCCcEEEEeCCCCCCcCCCC
Q 013293 93 VYSWGWG--DFGRLGHGNSSDLFTPLPIKAL------HSLRVKQIAC----GDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (446)
Q Consensus 93 v~~wG~n--~~gqlG~~~~~~~~~p~~v~~l------~~~~I~~I~~----G~~h~~~lt~~G~vy~wG~n~~gqlg~~~ 160 (446)
|..|-.. ..+++ ........+..+ ....+..+.. .....+.-+.||.|+.|-......
T Consensus 135 i~vwd~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----- 204 (437)
T 3gre_A 135 IIVLKVNHYQQESE-----VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER----- 204 (437)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-----
T ss_pred EEEEEeccccCCce-----eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-----
Confidence 9999542 11111 000011111111 2334555542 245666677889999997543110
Q ss_pred CCCcccceeeccc-CCccEEEEEeC--CCeEEEEEcCCcEEEEeC
Q 013293 161 TEDSLVPQKLQAF-EGVSIKMVAAG--AEHSVAVAEDGELYGWGW 202 (446)
Q Consensus 161 ~~~~~~p~~v~~~-~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~ 202 (446)
...+... ....|..++.. ....+.-..||.|..|-.
T Consensus 205 ------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 205 ------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp ------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred ------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 1111110 12357766654 344555678899999964
No 89
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=49.47 E-value=1.6e+02 Score=27.00 Aligned_cols=237 Identities=10% Similarity=0.083 Sum_probs=111.2
Q ss_pred cEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEEE
Q 013293 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQS 147 (446)
Q Consensus 72 ~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy~ 147 (446)
.|..++...+ +.+....+ |.|+.|- ..++ ....+. .....|..++.. ..+.+....+|.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~d-g~i~i~~--~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVEN-GELRLWN--KTGA----------LLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETT-SCEEEEE--TTSC----------EEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCC-CeEEEEe--CCCC----------eeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 5777766533 34444556 8999995 1111 111111 123457777654 345666778899999
Q ss_pred EeCCCCCCcCCCCCCCcccceeec----ccCCccEEEEE-eCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceee
Q 013293 148 WGRNQNGQLGLGTTEDSLVPQKLQ----AFEGVSIKMVA-AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (446)
Q Consensus 148 wG~n~~gqlg~~~~~~~~~p~~v~----~~~~~~i~~ia-~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v 222 (446)
|-......+..-.... .....+. ...+..+..+. ......++...+|.|+.|-..... +...
T Consensus 176 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~------------~~~~ 242 (425)
T 1r5m_A 176 WNVISGTVMQHFELKE-TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT------------PTGK 242 (425)
T ss_dssp EETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS------------CSEE
T ss_pred EECCCCcEEEEeeccc-cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc------------eeee
Confidence 9764321110000000 0000000 00000011111 113445666778899998654311 1111
Q ss_pred eeecCceEEEEEec--CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCC-eeEEEeCCC
Q 013293 223 ATVDREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDG 299 (446)
Q Consensus 223 ~~~~~~~i~~ia~G--~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~-h~~~lt~~G 299 (446)
.......|..++.. ....+.-..+|.|+.|-..... ....+.. ....|..++.... ..+....+|
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~l~~~~~d~ 310 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-----------SQNCFYG-HSQSIVSASWVGDDKVISCSMDG 310 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----------CSEEECC-CSSCEEEEEEETTTEEEEEETTS
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----------cceEecC-CCccEEEEEECCCCEEEEEeCCC
Confidence 11112345444433 3345555678888888532211 0111111 1223555554322 555567889
Q ss_pred cEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEec--CCeEEEEECCCCEEEEeCC
Q 013293 300 KLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG--WRHTLAVTERQNVFSWGRG 359 (446)
Q Consensus 300 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G--~~h~~al~~~g~v~~wG~n 359 (446)
.|+.|-.... .+..........|..++.. ....++-..+|.|+.|-..
T Consensus 311 ~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 311 SVRLWSLKQN------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEEEETTTT------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred cEEEEECCCC------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 9999875431 1222211223456666554 3344555678999999653
No 90
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=48.65 E-value=1.6e+02 Score=26.83 Aligned_cols=222 Identities=12% Similarity=0.078 Sum_probs=113.0
Q ss_pred CCCEEE--EEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEe-----CCCeEEEEEcCC
Q 013293 123 SLRVKQ--IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA-----GAEHSVAVAEDG 195 (446)
Q Consensus 123 ~~~I~~--I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~-----G~~hs~~lt~~G 195 (446)
+..+.. ++....+.+++|+.|++|..-..+-...+.... -......+..-++++|+.+.. ...+.+++|++|
T Consensus 41 ~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~-G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G 119 (307)
T 1zi0_A 41 EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR-GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANG 119 (307)
T ss_dssp -CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC-CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC-CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 334443 455678899999999999998655433332111 111111222234667777754 234578889999
Q ss_pred cEEEEeCCCCCCcCCCCCCCccccee-eeeecCceEEEE--EecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeE
Q 013293 196 ELYGWGWGRYGNLGLGDRNDRLIPEK-VATVDREKMVMV--ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC 272 (446)
Q Consensus 196 ~vy~~G~n~~gqlG~~~~~~~~~p~~-v~~~~~~~i~~i--a~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~ 272 (446)
.+.-.-...+-... + .... +....+..++.+ ..+..+.+++|++|+++.+-..+--.+|...... .
T Consensus 120 ~~Krt~l~e~~~~~------r-~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~ 188 (307)
T 1zi0_A 120 TVKKTVLTEFNRLR------T-AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----R 188 (307)
T ss_dssp EEEEEEGGGGTTCC------T-TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----E
T ss_pred eEEEEEHHHhhccc------c-CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----E
Confidence 88766433221110 0 0000 111122334333 3356688999999999998766554444322111 1
Q ss_pred EecccCCCcEEEEecC--CCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEE-EecCC-CCcEEEEEe--cCCeEEE
Q 013293 273 QLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQ-VKFPL-DQKVVQISC--GWRHTLA 346 (446)
Q Consensus 273 ~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~-v~~~~-~~~i~~i~~--G~~h~~a 346 (446)
.+..-.+..|..+..- ....+++|+.|.+--.-...|-.-+.+.. -+. +++.. ...++.+.. .....++
T Consensus 189 ~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k-----G~~~~~~~~~~~~lv~~~~v~~~~~l~~ 263 (307)
T 1zi0_A 189 GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-----GVISIKVTERNGLVVGAVQVDDCDQIMM 263 (307)
T ss_dssp CCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred eEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC-----CEEeeEecCCCCeEEEEEEeCCCceEEE
Confidence 1222234556666432 23466777777654433333221111100 011 11111 134554333 4566788
Q ss_pred EECCCCEEEEeCCCC
Q 013293 347 VTERQNVFSWGRGTN 361 (446)
Q Consensus 347 l~~~g~v~~wG~n~~ 361 (446)
++++|.+.-.--++-
T Consensus 264 ~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 264 ITDAGTLVRTRVSEI 278 (307)
T ss_dssp EESSCCEEEEEGGGS
T ss_pred EcCCCcEEEEecccc
Confidence 999999887655443
No 91
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=48.30 E-value=1.5e+02 Score=26.31 Aligned_cols=157 Identities=11% Similarity=0.056 Sum_probs=83.1
Q ss_pred eEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEE--EcCCceEEEEecCCcEEEEeCCCCCCcCCCC
Q 013293 83 TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (446)
Q Consensus 83 ~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I--~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~ 160 (446)
.++++.+ |-+---....++ ...+..-.+..++.+ +....+.+++|+.|++|..-..+.-.. .
T Consensus 5 ~v~lT~~-G~iKr~~~~~~~------------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r-- 68 (256)
T 1zvt_A 5 TIVLSQM-GWVRSAKGHDID------------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-R-- 68 (256)
T ss_dssp EEEEETT-SEEEEEESSCCC------------STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-S--
T ss_pred EEEEeCC-CEEEEeeCCcCC------------ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc-C--
Confidence 4567777 877555432221 111112234455544 445678999999999999876543111 1
Q ss_pred CCCcccceeecccCCccEEEEEeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee-cCceEEEE--E-
Q 013293 161 TEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV-DREKMVMV--A- 234 (446)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~-~~~~i~~i--a- 234 (446)
.........+..-++.+|+.+... ..+.+++|++|.+.-.-...+-..... -..+..+ .+..++.+ .
T Consensus 69 ~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~-------G~~~i~L~~~d~lv~~~~~~ 141 (256)
T 1zvt_A 69 GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA-------GKALITLPENAHVMPPVVIE 141 (256)
T ss_dssp SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTT-------CEECBCCCTTCCBCCCEECC
T ss_pred CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcC-------ceEEEEECCCCEEEEEEEec
Confidence 111111112222346678887663 445788899998876654333111000 0011111 12223322 1
Q ss_pred ecCceEEEEeCCCCEEEeeCCCCCCCCC
Q 013293 235 CGWRHTISVSSSGRLYSYGWSKYGQLGH 262 (446)
Q Consensus 235 ~G~~~s~~l~~~G~vy~~G~n~~gqlG~ 262 (446)
.+..+.++++++|++.-+-.++.-.+|.
T Consensus 142 ~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 142 DASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred CCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 2567889999999998887665544443
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=45.51 E-value=1.8e+02 Score=26.47 Aligned_cols=251 Identities=8% Similarity=-0.002 Sum_probs=118.6
Q ss_pred CCCCEEEEEecC---CceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC-----eeEEEEc
Q 013293 17 PFRPVLLISAGA---SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-----HTTAYSE 88 (446)
Q Consensus 17 ~~~~i~~i~~G~---~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~-----~~~~l~~ 88 (446)
....|..++.-. ...+.-..||.|..|-..... +....... ..+..+..... ..+.-..
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ------------TADVFNFE-ETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE------------EEEEEECS-SCEEEEEECSSCSSCCEEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc------------cceeccCC-CceeeeEeecCCCCCcEEEEEcC
Confidence 456788888643 344445579999999644311 11111111 23444444321 3444455
Q ss_pred CCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCc---eEEEEecCCcEEEEeCCCCCCc-CCCCC---
Q 013293 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQL-GLGTT--- 161 (446)
Q Consensus 89 ~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~---h~~~lt~~G~vy~wG~n~~gql-g~~~~--- 161 (446)
+ |.|+.|-...... ...+. .....|..++.... ..+.-..||.|+.|-....... -.-..
T Consensus 165 ~-~~v~~~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 165 G-PKVQLCDLKSGSC-----------SHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp S-SSEEEEESSSSCC-----------CEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred C-CeEEEEeCCCcce-----------eeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 6 9999996532111 11111 12335777765432 2556678999999976442211 00000
Q ss_pred CCcccceeecccCCccEEEEEeCC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCce
Q 013293 162 EDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRH 239 (446)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~ 239 (446)
.....+..........|..++... .+.+....||.|+.|-......+-....... ........+.........
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC-----NNSKKGLKFTVSCGCSSE 306 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC-----CCCSSCCCCEECCSSSSC
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc-----ccccccceeEEecCCCce
Confidence 000000000011223566666643 4566667899999997544222111000000 000001111111222344
Q ss_pred EEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC--CCeeEEEeCCCcEEEeeeCCCC
Q 013293 240 TISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFG 310 (446)
Q Consensus 240 s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~v~~wG~n~~G 310 (446)
.++...+|.|+.|-...... ...+.. ....|..++.. ..+.+.-..||.|+.|-....-
T Consensus 307 ~~~~~~~~~i~v~d~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVYSGEQ-----------ITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEEETTEEEEEETTTCCE-----------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEecCCEEEEEECcCCcc-----------eeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 55566788899986432111 111111 12235555543 3445556679999999876543
No 93
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=45.25 E-value=1.7e+02 Score=26.28 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=14.3
Q ss_pred cCCeeEEEEcCCCEEEEEeCCC
Q 013293 79 GADHTTAYSESCMQVYSWGWGD 100 (446)
Q Consensus 79 G~~~~~~l~~~~g~v~~wG~n~ 100 (446)
+.-..+++..+ |++|+...+.
T Consensus 24 ~~v~~va~d~~-G~l~v~~~~~ 44 (329)
T 3fvz_A 24 GQVSGVALDSK-NNLVIFHRGD 44 (329)
T ss_dssp SCEEEEEECTT-CCEEEEECTT
T ss_pred CCceEEEECCC-CCEEEEeCCC
Confidence 44455677777 8888877654
No 94
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=45.11 E-value=2.7e+02 Score=28.50 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=112.5
Q ss_pred cEEEEEecCCe--eEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEc--CCceEEEEecCCcEEE
Q 013293 72 EIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQS 147 (446)
Q Consensus 72 ~i~~i~~G~~~--~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~--G~~h~~~lt~~G~vy~ 147 (446)
.|..++...+. .++-..+ |.|..|-..... ....+. .....|..++. .....+..+.+|.|+.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~-g~v~iwd~~~~~-----------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQV-----------EVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETT-SEEEEEETTTTE-----------EEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCC-CEEEEEECCCCc-----------eEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 46666654333 3334456 899999643210 111111 12334655543 3455666778999999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCC--CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee
Q 013293 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (446)
Q Consensus 148 wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~ 225 (446)
|-...... ...+.. ....|..++... .+.+.-..+|.|..|-..... ........
T Consensus 82 w~~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------~~~~~~~~ 138 (814)
T 3mkq_A 82 FNYNTGEK-----------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----------ALEQTFEG 138 (814)
T ss_dssp EETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-----------EEEEEEEC
T ss_pred EECCCCcE-----------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-----------eEEEEEcC
Confidence 97543211 111111 122466665543 345555678999998542210 11111111
Q ss_pred cCceEEEEEecC---ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEec----CCCeeEEEeCC
Q 013293 226 DREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG----GWRHTMAVTSD 298 (446)
Q Consensus 226 ~~~~i~~ia~G~---~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~----G~~h~~~lt~~ 298 (446)
....|..++... ...+.-..+|.|+.|-...... ...+.......+..++. .....+.-..+
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----------SEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------eeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 234566666543 3445556789999996422110 11111111122333332 34455556678
Q ss_pred CcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCC--eEEEEECCCCEEEEeCC
Q 013293 299 GKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR--HTLAVTERQNVFSWGRG 359 (446)
Q Consensus 299 G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~--h~~al~~~g~v~~wG~n 359 (446)
|.|+.|-.... + ....+. .....|..++.... ..+.-..||.|+.|-..
T Consensus 208 g~i~~~d~~~~-~----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 208 LTIKIWDYQTK-S----------CVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp SEEEEEETTTT-E----------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CEEEEEECCCC-c----------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 99999864321 0 111111 12245666554433 34445578999999644
No 95
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=42.77 E-value=1.3e+02 Score=24.11 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=61.0
Q ss_pred CccEEEEEeCC-CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEec-CceEEEEeCCCCEEEe
Q 013293 175 GVSIKMVAAGA-EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACG-WRHTISVSSSGRLYSY 252 (446)
Q Consensus 175 ~~~i~~ia~G~-~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G-~~~s~~l~~~G~vy~~ 252 (446)
....+++.|-. .+.+-+..||.|-.-... .....--.+.... ..++.|.|- ..+.+++..+|+||.-
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~----------~~~~s~lei~sv~-~G~V~L~g~~sg~yL~mn~~G~l~Gs 97 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDR----------SDTHIQFQISPEG-NGEVLLKSTETGQYLRINPDGTVDGT 97 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEEE-TTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCC----------CCCceEEEEEEcc-CCEEEEEEecCCEEEeECCCCCEeec
Confidence 44678888876 567778889999855321 1111222232222 347778775 4678899999999975
Q ss_pred eCCCCCCCCCCCCCCceeeEEec--ccCCCcEEEEecCCCeeEEEeCCCcEEE
Q 013293 253 GWSKYGQLGHGDFKDHLVPCQLE--ALRESFISQISGGWRHTMAVTSDGKLYG 303 (446)
Q Consensus 253 G~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~Ia~G~~h~~~lt~~G~v~~ 303 (446)
-. . .+.....++. ......|+.+..| ..++++.+|++|+
T Consensus 98 ~~--~--------t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 98 RD--R--------SDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp CC--T--------TCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred cc--C--------CCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 22 1 1111122221 1222223333344 4889999999995
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=40.53 E-value=1.8e+02 Score=25.25 Aligned_cols=139 Identities=18% Similarity=0.179 Sum_probs=69.5
Q ss_pred CCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCC--CCCcEEEEEecCCe--eEEEEcCCCEEEEEeCCCCCC
Q 013293 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL--DGHEIVSVTCGADH--TTAYSESCMQVYSWGWGDFGR 103 (446)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~--~~~~i~~i~~G~~~--~~~l~~~~g~v~~wG~n~~gq 103 (446)
....+++-.|+.|+.|=.... + ..++-.+ ....|..|+..... .+.-..| |.|..|-.....
T Consensus 35 ~~~~lAvg~D~tV~iWd~~tg-~-----------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-g~v~iw~~~~~~- 100 (318)
T 4ggc_A 35 SGNVLAVALDNSVYLWSASSG-D-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQK- 100 (318)
T ss_dssp TTSEEEEEETTEEEEEETTTC-C-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SEEEEEETTTTE-
T ss_pred CCCEEEEEeCCEEEEEECCCC-C-----------EEEEEEecCCCCeEEEEEECCCCCEEEEEECC-CcEEEeecCCce-
Confidence 344677778999999953321 1 1111111 12347777665443 3334566 999999543211
Q ss_pred cCCCCCCCceeeeeecccCCCCEEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEE--
Q 013293 104 LGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV-- 181 (446)
Q Consensus 104 lG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i-- 181 (446)
+..........+..++......+.-..++.+..|-....... . ..+.. ....+..+
T Consensus 101 -----------~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~---------~-~~~~~-~~~~~~~~~~ 158 (318)
T 4ggc_A 101 -----------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH---------V-ATLSG-HSQEVCGLRW 158 (318)
T ss_dssp -----------EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE---------E-EEEEC-CSSCEEEEEE
T ss_pred -----------eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCcee---------E-EEEcC-ccCceEEEEE
Confidence 111111123345566665566666667777777754332110 0 01111 11123333
Q ss_pred EeCCCeEEEEEcCCcEEEEeC
Q 013293 182 AAGAEHSVAVAEDGELYGWGW 202 (446)
Q Consensus 182 a~G~~hs~~lt~~G~vy~~G~ 202 (446)
.....+.+.-..||.|..|-.
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEES
T ss_pred cCCCCEEEEEecCcceeEEEC
Confidence 333445566678899999954
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=39.50 E-value=2.1e+02 Score=25.60 Aligned_cols=250 Identities=8% Similarity=-0.052 Sum_probs=114.9
Q ss_pred CCCEEEEEecCCceEE-EE-eCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec--CCeeEEEEcCCCEE
Q 013293 18 FRPVLLISAGASHSVA-LL-SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~-l~-~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~g~v 93 (446)
...|.+++.......+ .. .+|.|+.|-..... ......+... ...|..++.. ....+....+ |.|
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d-g~i 76 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------WVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD-RNA 76 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------EEEEEEEECC-SSCEEEEEEETTTTEEEEEETT-SCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------EEeeeeecCC-CCcccEEEEeCCCCEEEEEcCC-CeE
Confidence 3456666654443322 22 68888888533210 0011112211 2356666554 3344444556 888
Q ss_pred EEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeec
Q 013293 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (446)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~ 171 (446)
+.|-.... ...+..........|..++.. ....+..+.+|.|+.|-...... ......+.
T Consensus 77 ~vwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~~ 138 (372)
T 1k8k_C 77 YVWTLKGR----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--------WWVCKHIK 138 (372)
T ss_dssp EEEEEETT----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------EEEEEEEC
T ss_pred EEEECCCC----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------ceeeeeee
Confidence 88853211 111111111123456666654 34556667789998886433210 00111111
Q ss_pred ccCCccEEEEEeCC--CeEEEEEcCCcEEEEeCCCCCCcCCCCC----CCcccceeeeee--cCceEEEEEecC--ceEE
Q 013293 172 AFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDR----NDRLIPEKVATV--DREKMVMVACGW--RHTI 241 (446)
Q Consensus 172 ~~~~~~i~~ia~G~--~hs~~lt~~G~vy~~G~n~~gqlG~~~~----~~~~~p~~v~~~--~~~~i~~ia~G~--~~s~ 241 (446)
......|..++... ...+.-..+|.|+.|-......-..... ........+..+ ....|..++... .+.+
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 11123566666543 3455556899999996432110000000 000011122222 123466655533 3555
Q ss_pred EEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC-CCeeEEEeCCCcEEEeeeCC
Q 013293 242 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNK 308 (446)
Q Consensus 242 ~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-~~h~~~lt~~G~v~~wG~n~ 308 (446)
....+|.|+.|-..... ....+. .....|..++.. ....++...+|.|+.|-...
T Consensus 219 ~~~~d~~i~i~d~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKM-----------AVATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEETTTEEEEEEGGGTT-----------EEEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEeCCCEEEEEECCCCc-----------eeEEEc-cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 56678888888543211 011111 112235555432 23455556788888887654
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=39.32 E-value=2e+02 Score=25.37 Aligned_cols=207 Identities=10% Similarity=-0.027 Sum_probs=105.4
Q ss_pred CCCCCEEEEEecCCce--EEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec--CC-eeEEEEcCC
Q 013293 16 APFRPVLLISAGASHS--VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--AD-HTTAYSESC 90 (446)
Q Consensus 16 ~~~~~i~~i~~G~~~~--~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G--~~-~~~~l~~~~ 90 (446)
+....|.+++...... ++-..||.|+.|-..... ....+..+... ...|..++.. .. +.+.-..+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d- 78 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSLRY-KHPLLCCNFIDNTDLQIYVGTVQ- 78 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEEEC-SSCEEEEEEEESSSEEEEEEETT-
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeeeec-CCceEEEEECCCCCcEEEEEcCC-
Confidence 4456788877654433 333478999999644321 00111222211 2356666553 33 45555566
Q ss_pred CEEEEEeCCCCCCcCCCCCCCceeeeeecc-cCCCCEEEEEcC-CceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccce
Q 013293 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHSLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQ 168 (446)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~-l~~~~I~~I~~G-~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~ 168 (446)
|.|+.|-....++ ...+.. .....|..++.. ....+....||.|+.|-...... ........+.
T Consensus 79 g~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~ 144 (342)
T 1yfq_A 79 GEILKVDLIGSPS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLNS 144 (342)
T ss_dssp SCEEEECSSSSSS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESCS
T ss_pred CeEEEEEeccCCc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCee
Confidence 9999995411111 122221 023456666544 56677778899999996322000 0000000000
Q ss_pred eecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC---ceEEEEeC
Q 013293 169 KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW---RHTISVSS 245 (446)
Q Consensus 169 ~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~---~~s~~l~~ 245 (446)
.... ....|..++...+..++.+.+|.|+.|-....+.. ............+..++... ...++-..
T Consensus 145 ~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp SSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred eEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence 0001 12367788877777777788999999975431110 01111111223455555543 45556678
Q ss_pred CCCEEEeeCCC
Q 013293 246 SGRLYSYGWSK 256 (446)
Q Consensus 246 ~G~vy~~G~n~ 256 (446)
+|.+..|-...
T Consensus 215 dg~i~i~~~~~ 225 (342)
T 1yfq_A 215 DGRVAVEFFDD 225 (342)
T ss_dssp TSEEEEEECCT
T ss_pred CCcEEEEEEcC
Confidence 88888876543
No 99
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=38.85 E-value=2.1e+02 Score=25.46 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=12.7
Q ss_pred CCeeEEEeCCCcEEEeeeC
Q 013293 289 WRHTMAVTSDGKLYGWGWN 307 (446)
Q Consensus 289 ~~h~~~lt~~G~v~~wG~n 307 (446)
..|+++. -+++||++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 4566665 57789999854
No 100
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=37.92 E-value=95 Score=28.43 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=13.1
Q ss_pred CceEEEEeCCCCEEEeeC
Q 013293 237 WRHTISVSSSGRLYSYGW 254 (446)
Q Consensus 237 ~~~s~~l~~~G~vy~~G~ 254 (446)
..|+++. .+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4576666 6899999994
No 101
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=37.68 E-value=4.3e+02 Score=28.75 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=73.8
Q ss_pred CCCEEEEEecCCceEEE--EeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEE
Q 013293 18 FRPVLLISAGASHSVAL--LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQV 93 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l--~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v 93 (446)
...|..++.......++ ..||.|..|-...... ...+..- ...|..++...+ +.+....| |.|
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d-~~v 681 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------LLDIKAH-EDEVLCCAFSSDDSYIATCSAD-KKV 681 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEECCC-SSCEEEEEECTTSSEEEEEETT-SEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------EEEeccC-CCCEEEEEEecCCCEEEEEeCC-CeE
Confidence 34566666554443333 3677787776433211 1111111 235666665433 44444566 999
Q ss_pred EEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCC--c--eEEEEecCCcEEEEeCCCCCCcCCCCCCCccccee
Q 013293 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--S--HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (446)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~--~--h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~ 169 (446)
..|-.... + ....+. .....|..++... . ..+.-..||.|..|-...... ...
T Consensus 682 ~vwd~~~~-~----------~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-----------~~~ 738 (1249)
T 3sfz_A 682 KIWDSATG-K----------LVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-----------RNT 738 (1249)
T ss_dssp EEEETTTC-C----------EEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-----------EEE
T ss_pred EEEECCCC-c----------eEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-----------hhe
Confidence 99964321 1 011111 1233566666543 2 234446789999997543210 111
Q ss_pred ecccCCccEEEEEe--CCCeEEEEEcCCcEEEEeC
Q 013293 170 LQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGW 202 (446)
Q Consensus 170 v~~~~~~~i~~ia~--G~~hs~~lt~~G~vy~~G~ 202 (446)
+.. ....|..++. .....+....||.|..|-.
T Consensus 739 ~~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 739 MFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp ECC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred ecC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence 111 1124555544 3345566678899999853
No 102
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=37.01 E-value=2.5e+02 Score=25.76 Aligned_cols=223 Identities=9% Similarity=-0.006 Sum_probs=111.6
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC-----CceEEEEecCCcEEEEeC
Q 013293 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G-----~~h~~~lt~~G~vy~wG~ 150 (446)
++...++.+++++. |++|..-..+.=..+.... -.+....+....+++|+.+..- ..+.+++|++|.+.-.-.
T Consensus 46 ~~~t~d~ll~fT~~-Gr~~~~~~~elp~~~r~a~-G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNK-GNYLYCPVHELPDIRWKDL-GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETT-SEEEEEEGGGSCBCCTTSC-CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CEEEEEEHHHCcCCCCCCC-CcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 45567778888888 9999987654322221110 0111111222356678776443 235888999998887765
Q ss_pred CCCCCcCCCCCCCcccceeeccc-CCccEEE--EEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeee-eec
Q 013293 151 NQNGQLGLGTTEDSLVPQKLQAF-EGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA-TVD 226 (446)
Q Consensus 151 n~~gqlg~~~~~~~~~p~~v~~~-~~~~i~~--ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~-~~~ 226 (446)
.++-..... .......+ ++..++. +..+.++.+++|++|+++-+-.+..-.+|..... .+.. ...
T Consensus 124 ~e~~~~~r~------~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G-----V~~i~L~~ 192 (323)
T 1wp5_A 124 KHYKAQRYS------KPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG-----VKGMNLKE 192 (323)
T ss_dssp GGGCCSCCS------SCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC-----EECCCCCT
T ss_pred HHhhhcccc------CceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC-----EEEEEeCC
Confidence 443211100 00111111 1223433 3346788999999999998876554333332111 1111 123
Q ss_pred CceEEEEEe--cCc-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEE--EecCCCeeEEEeCCCcE
Q 013293 227 REKMVMVAC--GWR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKL 301 (446)
Q Consensus 227 ~~~i~~ia~--G~~-~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--Ia~G~~h~~~lt~~G~v 301 (446)
++.|+.+.. ... ..+.++++|.....-..++-.-+.+.. -...+...+. .+..+.. +..+....++++++|++
T Consensus 193 ~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~-~~~~l~~~~~v~~~~~i~~it~~g~~ 270 (323)
T 1wp5_A 193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKA-NPHRISGFVVAQDSDTIYLQTEKSFI 270 (323)
T ss_dssp TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSS-SCCCEEEEEEECTTCEEEEEETTSCE
T ss_pred CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCC-CCceEEEEEEeCCCCeEEEEeCCCeE
Confidence 345555532 122 567778887654444333322222110 0111111111 1112332 23456778899999998
Q ss_pred EEeeeCCCCCCc
Q 013293 302 YGWGWNKFGQVG 313 (446)
Q Consensus 302 ~~wG~n~~GqLG 313 (446)
.-.--+..-..|
T Consensus 271 ir~~~~~i~~~~ 282 (323)
T 1wp5_A 271 ETIKVGDIRFSD 282 (323)
T ss_dssp EEEEGGGSCBCC
T ss_pred EEEEhhhcCccC
Confidence 876555443333
No 103
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=34.18 E-value=2.8e+02 Score=25.52 Aligned_cols=241 Identities=12% Similarity=0.102 Sum_probs=105.8
Q ss_pred EEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEEEE
Q 013293 73 IVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSW 148 (446)
Q Consensus 73 i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy~w 148 (446)
|..++...+ +.+.-..| +.|..|-.... .+.....-....|..++.. ..+.+.-..||.|..|
T Consensus 126 v~~v~~s~dg~~l~s~~~d-~~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAED-RLIRIWDIENR------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp EEEEEECTTSSEEEEEETT-SCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEEcCC-CeEEEEECCCC------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 666665433 33334456 88998853321 1111111123356666653 3455666788999999
Q ss_pred eCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC---CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee
Q 013293 149 GRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (446)
Q Consensus 149 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G---~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~ 225 (446)
-... +++ ...+.. ...+..++.. ....+.-..||.|..|-... +++-. ....+......
T Consensus 193 d~~~-~~~----------~~~~~~--~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~----~~~~~~~~~~~ 254 (393)
T 1erj_A 193 DLRT-GQC----------SLTLSI--EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVE----RLDSENESGTG 254 (393)
T ss_dssp ETTT-TEE----------EEEEEC--SSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEE----EEC------CC
T ss_pred ECCC-Cee----------EEEEEc--CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEE----eecccccCCCC
Confidence 6432 110 111111 1234444443 23455556789999985322 11100 00000000001
Q ss_pred cCceEEEEEecC--ceEEEEeCCCCEEEeeCCCCCCCCCCCCCCce-eeEEecccCCCcEEEEecCC--CeeEEEeCCCc
Q 013293 226 DREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHL-VPCQLEALRESFISQISGGW--RHTMAVTSDGK 300 (446)
Q Consensus 226 ~~~~i~~ia~G~--~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~-~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~ 300 (446)
....|..++... .+.+.-..||.|..|-................ ....+.. ....|..++... .+.+.-..||.
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCe
Confidence 123455555443 34445567888888864332211100000000 0001111 112365565543 33444467889
Q ss_pred EEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecC-------Ce-EEEEECCCCEEEEe
Q 013293 301 LYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW-------RH-TLAVTERQNVFSWG 357 (446)
Q Consensus 301 v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~-------~h-~~al~~~g~v~~wG 357 (446)
|+.|-.... .+...-......|..++... .. .+.-..||.|..|-
T Consensus 334 v~iwd~~~~------------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 334 VLFWDKKSG------------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EEEEETTTC------------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred EEEEECCCC------------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 999864321 12222112234566666442 12 22334788898884
No 104
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=33.25 E-value=2.8e+02 Score=25.14 Aligned_cols=192 Identities=8% Similarity=0.050 Sum_probs=98.2
Q ss_pred CcEEEEEecCC---eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecc-cCCCCEEEEEcCC---ceEEEEecCC
Q 013293 71 HEIVSVTCGAD---HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHSLRVKQIACGD---SHCLAVTVEG 143 (446)
Q Consensus 71 ~~i~~i~~G~~---~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~-l~~~~I~~I~~G~---~h~~~lt~~G 143 (446)
..|..++.... ..+.-..+ |.|..|-..... ....+.. -....|..++... ...+....||
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKG-GDIILWDYDVQN-----------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBT-SCEEEEETTSTT-----------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred CCEEEEEECCCCCCEEEEEcCC-CeEEEEeCCCcc-----------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 45777776554 34444455 899999644211 1111111 1344677777644 4555667889
Q ss_pred cEEEEeCCCCCCcCCCCCCCcccceeecccC--CccEEEEE--eCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccc
Q 013293 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (446)
Q Consensus 144 ~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~ia--~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p 219 (446)
.|..|-.... ....+.... ...|..++ ......+.-..+|.|+.|-.. ++ +
T Consensus 142 ~i~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~-----------~ 196 (383)
T 3ei3_B 142 ATTLRDFSGS------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH-----------E 196 (383)
T ss_dssp EEEEEETTSC------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC-----------E
T ss_pred EEEEEECCCC------------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC-----------E
Confidence 9999975420 011111111 12344444 334556666788999998641 11 1
Q ss_pred eeeeeecCceEEEEEecCc---eEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCC---CeeE
Q 013293 220 EKVATVDREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTM 293 (446)
Q Consensus 220 ~~v~~~~~~~i~~ia~G~~---~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~---~h~~ 293 (446)
..........|..++.... ..+.-..+|.|..|-....... .. ....+. ....|..++... ...+
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~-~~~~~~--~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK------NS-YIAEMP--HEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST------TC-EEEEEE--CSSCEEEEEECTTTSCEEE
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc------cc-eEEEec--CCCceEEEEEcCCCCCEEE
Confidence 1111112345666655443 3445567888888854321100 00 111111 123466666543 4555
Q ss_pred EEeCCCcEEEeeeCC
Q 013293 294 AVTSDGKLYGWGWNK 308 (446)
Q Consensus 294 ~lt~~G~v~~wG~n~ 308 (446)
....||.|+.|-...
T Consensus 268 ~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEESSSEEEEEETTB
T ss_pred EEcCCCcEEEEECCC
Confidence 566789999997654
No 105
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=33.20 E-value=3.1e+02 Score=28.36 Aligned_cols=122 Identities=9% Similarity=0.084 Sum_probs=67.2
Q ss_pred EcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC--CCeEEEEEcCCcEEEEeCCCCCC
Q 013293 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGN 207 (446)
Q Consensus 130 ~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~n~~gq 207 (446)
+....+.+++|+.|++|..-...-... ..........+..-++++|+.+... ..+.++.|++|.+.-.-...+-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~~---~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~ 587 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPSA---RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 587 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCCC---C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred ecCCCEEEEEecCCcEEEEEeeecccc---cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc
Confidence 344567899999999998875443221 1111112222222356788888765 34677889999888664332211
Q ss_pred cCCCCCCCccccee-eeeecCceEEEE---EecCceEEEEeCCCCEEEeeCCCCCCCC
Q 013293 208 LGLGDRNDRLIPEK-VATVDREKMVMV---ACGWRHTISVSSSGRLYSYGWSKYGQLG 261 (446)
Q Consensus 208 lG~~~~~~~~~p~~-v~~~~~~~i~~i---a~G~~~s~~l~~~G~vy~~G~n~~gqlG 261 (446)
. +..-.. +..-.+..++.+ ..+..+.++++++|++..|-.++--.+|
T Consensus 588 ~-------~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 588 R-------NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp C-------STTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred c-------CccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 0 000001 111122233222 2367788999999999998776544443
No 106
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=32.82 E-value=2.5e+02 Score=24.54 Aligned_cols=270 Identities=14% Similarity=0.152 Sum_probs=127.3
Q ss_pred CCCEEEEEecCCceEEE--EeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEE
Q 013293 18 FRPVLLISAGASHSVAL--LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQV 93 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l--~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v 93 (446)
...|..++.......++ ..||.|..|...... ....+.. ....|..++...+ ..+.-..+ |.|
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d-~~i 89 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTISG-HKLGISDVAWSSDSNLLVSASDD-KTL 89 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETT-SEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------cchhhcc-CCCceEEEEEcCCCCEEEEECCC-CEE
Confidence 35677776655444333 368888888653311 1111211 1234666665443 33444456 999
Q ss_pred EEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeec
Q 013293 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (446)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~ 171 (446)
..|-...... ...+.. ....|..++.. ....+.-..||.|+.|-...... ...+.
T Consensus 90 ~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~ 146 (312)
T 4ery_A 90 KIWDVSSGKC-----------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------LKTLP 146 (312)
T ss_dssp EEEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------EEEEC
T ss_pred EEEECCCCcE-----------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------EEEec
Confidence 9996432110 111111 12345555443 34455567789999996532110 01111
Q ss_pred ccCCccEEEEEeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEec--CceEEEEeCCC
Q 013293 172 AFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACG--WRHTISVSSSG 247 (446)
Q Consensus 172 ~~~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~~s~~l~~~G 247 (446)
. ....|..++.. ....+.-..||.|..|-.... + ....+.......+..++.. ..+.++-..+|
T Consensus 147 ~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 147 A-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-Q----------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-C----------EEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred C-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------eeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 1 12245555543 334555567889998854321 0 0011111112234444332 34555667788
Q ss_pred CEEEeeCCCCCCCCCCCCCCceeeEEecccCC---CcEEEEe-cCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCcccc
Q 013293 248 RLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE---SFISQIS-GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSP 323 (446)
Q Consensus 248 ~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~---~~i~~Ia-~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p 323 (446)
.|..|-..... ....+..... ....... .+..+.+.-.+||.|+.|-..... .
T Consensus 215 ~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------~ 271 (312)
T 4ery_A 215 TLKLWDYSKGK-----------CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE------------I 271 (312)
T ss_dssp EEEEEETTTTE-----------EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC------------E
T ss_pred eEEEEECCCCc-----------EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch------------h
Confidence 88888543211 1111111110 0011111 233344444678999999754321 1
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEE----CCCCEEEEeC
Q 013293 324 VQVKFPLDQKVVQISCGWRHTLAVT----ERQNVFSWGR 358 (446)
Q Consensus 324 ~~v~~~~~~~i~~i~~G~~h~~al~----~~g~v~~wG~ 358 (446)
...-......|..+++-....++++ .|+.|..|=.
T Consensus 272 ~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 272 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 1111112345777776655443332 5888888853
No 107
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=31.90 E-value=2.9e+02 Score=25.00 Aligned_cols=216 Identities=14% Similarity=0.117 Sum_probs=111.0
Q ss_pred EEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCC--eeecCCCCCcEEEEEe-----cCCeeEEEEcCCCEEEEE
Q 013293 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTC-----GADHTTAYSESCMQVYSW 96 (446)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P--~~v~~~~~~~i~~i~~-----G~~~~~~l~~~~g~v~~w 96 (446)
++....+.+++++.|++|..-..+--..+. ...-.| ..+...++..|+.+.. ...+.++++++ |.+.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~Krt 124 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN-GTVKKT 124 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEE
Confidence 455677788999999999776543222211 111122 1222234556777654 23356777887 988776
Q ss_pred eCCCCCCcCCCCCCCceee-eeecccCCCCEEEE--EcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeeccc
Q 013293 97 GWGDFGRLGHGNSSDLFTP-LPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF 173 (446)
Q Consensus 97 G~n~~gqlG~~~~~~~~~p-~~v~~l~~~~I~~I--~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~ 173 (446)
-..++-.... .. ..+....+..++.+ ..+..+.+++|++|+++-+-..+--.+|....-. ..+..-
T Consensus 125 ~l~e~~~~~r-------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~ 193 (307)
T 1zi0_A 125 VLTEFNRLRT-------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLG 193 (307)
T ss_dssp EGGGGTTCCT-------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCC
T ss_pred EHHHhhcccc-------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeC
Confidence 5443322110 11 11111233455543 3466789999999999999766544444322111 112222
Q ss_pred CCccEEEEEeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEe--cCceEEEEeCCCCE
Q 013293 174 EGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVAC--GWRHTISVSSSGRL 249 (446)
Q Consensus 174 ~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~~s~~l~~~G~v 249 (446)
++..|+.+..- ....+++|++|.+--.-...+-.-+.+.... ..+. +. -....++.+.. .....++++++|.+
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~-~~~~-~~-~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV-ISIK-VT-ERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE-ESSC-CC-TTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE-EeeE-ec-CCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 45567776542 3456777888865544332221111111100 0000 00 01133444333 45668899999998
Q ss_pred EEeeCCCC
Q 013293 250 YSYGWSKY 257 (446)
Q Consensus 250 y~~G~n~~ 257 (446)
.-+-.++-
T Consensus 271 ir~~~~~i 278 (307)
T 1zi0_A 271 VRTRVSEI 278 (307)
T ss_dssp EEEEGGGS
T ss_pred EEEecccc
Confidence 87765444
No 108
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=31.40 E-value=2.8e+02 Score=24.68 Aligned_cols=246 Identities=7% Similarity=-0.060 Sum_probs=111.7
Q ss_pred cEEEEEecCCe-eEEEE-cCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEEE
Q 013293 72 EIVSVTCGADH-TTAYS-ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQS 147 (446)
Q Consensus 72 ~i~~i~~G~~~-~~~l~-~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy~ 147 (446)
.|..++...+. .++.. .+ +.|+.|-.... .......+. .....|..++.. ....+....||.|+.
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d-~~v~i~~~~~~---------~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNN-HEVHIYEKSGN---------KWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp CCCEEEECTTSSEEEEECSS-SEEEEEEEETT---------EEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CeEEEEECCCCCEEEEEeCC-CEEEEEeCCCC---------cEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 45555554332 23333 45 89999953221 000111111 123356666554 445556677899999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC--CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee
Q 013293 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (446)
Q Consensus 148 wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~ 225 (446)
|-.... + ..+.....-....|..++.. ....+.-..+|.|+.|-...... ......+...
T Consensus 79 wd~~~~-~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~~~~ 140 (372)
T 1k8k_C 79 WTLKGR-T---------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--------WWVCKHIKKP 140 (372)
T ss_dssp EEEETT-E---------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------EEEEEEECTT
T ss_pred EECCCC-e---------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------ceeeeeeecc
Confidence 864221 0 01111101112346666543 34555566788888885432110 0001111111
Q ss_pred cCceEEEEEecC--ceEEEEeCCCCEEEeeCCCCCCCCCCC-------CCCceeeEEecccCCCcEEEEecC--CCeeEE
Q 013293 226 DREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGD-------FKDHLVPCQLEALRESFISQISGG--WRHTMA 294 (446)
Q Consensus 226 ~~~~i~~ia~G~--~~s~~l~~~G~vy~~G~n~~gqlG~~~-------~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~ 294 (446)
....|..++... ...+.-..+|.|+.|-......-.... .........+. .....|..++.. ..+.+.
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEE
Confidence 124566665543 345555678999999642211000000 00000111111 112336665543 334555
Q ss_pred EeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEec-CCeEEEEECCCCEEEEeCC
Q 013293 295 VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG-WRHTLAVTERQNVFSWGRG 359 (446)
Q Consensus 295 lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G-~~h~~al~~~g~v~~wG~n 359 (446)
...+|.|+.|-.... .+..........|..++.. ....++...++.|+.|-..
T Consensus 220 ~~~d~~i~i~d~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~ 273 (372)
T 1k8k_C 220 VSHDSTVCLADADKK------------MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYD 273 (372)
T ss_dssp EETTTEEEEEEGGGT------------TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred EeCCCEEEEEECCCC------------ceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEcc
Confidence 567888888875432 1111111122345555443 2345555678888888643
No 109
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=30.15 E-value=2.9e+02 Score=24.39 Aligned_cols=199 Identities=11% Similarity=0.064 Sum_probs=96.5
Q ss_pred CCCEEEEEecCC----c-eEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEe--------cCCeeE
Q 013293 18 FRPVLLISAGAS----H-SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTC--------GADHTT 84 (446)
Q Consensus 18 ~~~i~~i~~G~~----~-~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~--------G~~~~~ 84 (446)
...|..++.... . .+.-..||.|..|-..... .....+... ...|..+.. ...+.+
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE----------MPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS----------SCSEEECCC-SSCEEEEEEESGGGCC-CCCEEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC----------ccEEEEEec-ccceEEEeeccccccCCCccEEE
Confidence 446666666553 2 2333467888888544321 011111111 234665532 233444
Q ss_pred EEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEE------cCCceEEEEecCCcEEEEeCCCCCCcCC
Q 013293 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA------CGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (446)
Q Consensus 85 ~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~------~G~~h~~~lt~~G~vy~wG~n~~gqlg~ 158 (446)
.-..+ |.|..|-...... ...............+..++ ......+.-..+|.|+.|-.....
T Consensus 134 ~~~~d-~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---- 201 (357)
T 3i2n_A 134 TGSRD-GTVKVWDPRQKDD-------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---- 201 (357)
T ss_dssp EEETT-SCEEEECTTSCSS-------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----
T ss_pred EEeCC-CeEEEEeCCCCCC-------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----
Confidence 45566 9999996433210 00011111111123566665 334555666778999999754311
Q ss_pred CCCCCcccceeecccCCccEEEEEeC-----CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEE
Q 013293 159 GTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMV 233 (446)
Q Consensus 159 ~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i 233 (446)
+...... ...|..++.. ....++-..+|.|+.|-...... ....+..........|..+
T Consensus 202 --------~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 202 --------LRWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP-------TKGFASVSEKAHKSTVWQV 265 (357)
T ss_dssp --------EEEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET-------TTEEEEEEEECCSSCEEEE
T ss_pred --------eeeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc-------ccceeeeccCCCcCCEEEE
Confidence 1111111 2356666654 35566667899999985432100 0000100111223456666
Q ss_pred EecCc---eEEEEeCCCCEEEeeCC
Q 013293 234 ACGWR---HTISVSSSGRLYSYGWS 255 (446)
Q Consensus 234 a~G~~---~s~~l~~~G~vy~~G~n 255 (446)
+.... ..+.-..+|.|+.|-..
T Consensus 266 ~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 266 RHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEETTEEEEEEEEETTSEEEEEEEE
T ss_pred EECCCCCcEEEEEeCCCcEEEeecC
Confidence 66554 34445678999888654
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=28.98 E-value=3.4e+02 Score=24.92 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=12.9
Q ss_pred CEEEEEcC--CceEEEEe-cCCcEEEEeC
Q 013293 125 RVKQIACG--DSHCLAVT-VEGEVQSWGR 150 (446)
Q Consensus 125 ~I~~I~~G--~~h~~~lt-~~G~vy~wG~ 150 (446)
.+..++.. ..+.++.. .+|.|+.|-.
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISEDISVIDR 241 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence 44444433 23333333 4677777764
No 111
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=28.65 E-value=3.3e+02 Score=24.69 Aligned_cols=243 Identities=7% Similarity=-0.011 Sum_probs=111.7
Q ss_pred CcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC---CceEEEEecCCcE
Q 013293 71 HEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEV 145 (446)
Q Consensus 71 ~~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G---~~h~~~lt~~G~v 145 (446)
..|..++...+ ..+.-..+ |.|..|-...... . ..+..........|..++.. ....+.-..||.|
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~d-g~v~vw~~~~~~~------~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDN-GSLELYSTNEANN------A--INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESS-SCEEEECCSSTTS------C--CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred CceEEEEECCCCCeEEEEccC-CeEEEeecccccc------c--ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 35777765433 33334456 9999995433100 0 00111111123356666554 4455566678999
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecc--cCCccEEEEEeCC---CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccce
Q 013293 146 QSWGRNQNGQLGLGTTEDSLVPQKLQA--FEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220 (446)
Q Consensus 146 y~wG~n~~gqlg~~~~~~~~~p~~v~~--~~~~~i~~ia~G~---~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~ 220 (446)
+.|-......... ...+..+.. .....|..++... ...+.-..+|.|+.|-.... ....
T Consensus 139 ~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------~~~~ 202 (416)
T 2pm9_A 139 FIWDMNKCTESPS-----NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-----------KEVI 202 (416)
T ss_dssp EBCBTTTTSSCTT-----TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-----------EEEE
T ss_pred EEEECCCCccccc-----cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-----------Ccce
Confidence 9997544320000 000111100 0112455555443 33444467889999954321 0011
Q ss_pred eeeeec-----CceEEEEEecCc---eEEEEeCCC---CEEEeeCCCCCCCCCCCCCCceeeEEecc-cCCCcEEEEec-
Q 013293 221 KVATVD-----REKMVMVACGWR---HTISVSSSG---RLYSYGWSKYGQLGHGDFKDHLVPCQLEA-LRESFISQISG- 287 (446)
Q Consensus 221 ~v~~~~-----~~~i~~ia~G~~---~s~~l~~~G---~vy~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~Ia~- 287 (446)
.+.... ...|..++.... ..+.-..+| .|+.|-.....+. ..... .....|..++.
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-----------LQTLNQGHQKGILSLDWC 271 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-----------SBCCCSCCSSCEEEEEEC
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-----------cEEeecCccCceeEEEeC
Confidence 111110 244555555432 344445555 7777754322111 00000 11223666654
Q ss_pred --CCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEEecCC---eEEEEECCCCEEEEeCCCC
Q 013293 288 --GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR---HTLAVTERQNVFSWGRGTN 361 (446)
Q Consensus 288 --G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~~G~~---h~~al~~~g~v~~wG~n~~ 361 (446)
.....+.-..||.|+.|-.... .+..........|..++.... ..+.-..||.|..|--...
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESA------------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSC------------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCC------------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 3455566678899999964431 111111111233444544432 3334456888999976543
No 112
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=28.45 E-value=3.4e+02 Score=24.63 Aligned_cols=231 Identities=13% Similarity=0.081 Sum_probs=110.7
Q ss_pred CCEEEEEecCCceEE-EEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEEEE
Q 013293 19 RPVLLISAGASHSVA-LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYS 95 (446)
Q Consensus 19 ~~i~~i~~G~~~~~~-l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v~~ 95 (446)
..|.+++.-....++ -..||.|..|=......+ ........--...|..|+...+ +.+.-..| |.|..
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-~~i~i 153 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETL--------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-ICIKV 153 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC--------EEEEEEEECCSSCEEEEEECTTSSEEEEEETT-SCEEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce--------eEeeccccCCCCCEEEEEECCCCCEEEEEeCC-CeEEE
Confidence 347777755544443 347889999954332110 0011000001134777765433 33334456 89999
Q ss_pred EeCCCCCCcCCCCCCCceeeeeeccc--CCCCEEEEEcCC---ceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceee
Q 013293 96 WGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (446)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~~l--~~~~I~~I~~G~---~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v 170 (446)
|-... ...+..+ ....|..++... ...+.-..||.|..|-......+ ....
T Consensus 154 wd~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----------~~~~ 209 (344)
T 4gqb_B 154 WDLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----------SQIG 209 (344)
T ss_dssp EETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----------EECC
T ss_pred EECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee----------eeee
Confidence 95432 1122222 234677776643 23344567899999964321100 0000
Q ss_pred cccCCccEEEEEeC---CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC---ceEEEEe
Q 013293 171 QAFEGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW---RHTISVS 244 (446)
Q Consensus 171 ~~~~~~~i~~ia~G---~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~---~~s~~l~ 244 (446)
....+..+..++.. ....+.-..||.|..|-... +++ ...+ ......|..|+... .+.+.-.
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~----------~~~~-~~h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSC----------VLSS-AVHSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---C----------CEEE-ECCSSCEEEEEECSSSSCCEEEEE
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcE----------EEEE-cCCCCCEEEEEEccCCCeEEEEEe
Confidence 11122345555543 22333346789999984322 110 0111 11234577776543 3344457
Q ss_pred CCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCC-CeeEE--EeCCCcEEEeeeC
Q 013293 245 SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW-RHTMA--VTSDGKLYGWGWN 307 (446)
Q Consensus 245 ~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-~h~~~--lt~~G~v~~wG~n 307 (446)
.||.|+.|-.. .++ ...+.. -...|..++... ...++ -..||+|..|=..
T Consensus 278 ~D~~i~vwd~~-~~~-----------~~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 278 EDCSLAVLDSS-LSE-----------LFRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp TTSCEEEECTT-CCE-----------EEEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CCCeEEEEECC-CCc-----------EEEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 89999999432 111 111111 123477777542 22233 3478999998643
No 113
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=28.31 E-value=5e+02 Score=26.64 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=9.5
Q ss_pred eEEEEeCCCCEEEee
Q 013293 239 HTISVSSSGRLYSYG 253 (446)
Q Consensus 239 ~s~~l~~~G~vy~~G 253 (446)
.+++.+.+|++|.-.
T Consensus 498 ~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 498 RSIAQDSEGRFWIGT 512 (781)
T ss_dssp EEEEECTTCCEEEEE
T ss_pred EEEEEcCCCCEEEEE
Confidence 345667777777643
No 114
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=27.49 E-value=2.2e+02 Score=22.27 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=52.3
Q ss_pred EEEEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEE-eCCCeEEEEEcCCcEEEEeCCC
Q 013293 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA-AGAEHSVAVAEDGELYGWGWGR 204 (446)
Q Consensus 126 I~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia-~G~~hs~~lt~~G~vy~~G~n~ 204 (446)
+.--.|...+-+-+..||+|-.-.... +...--.+.+..- .++.|. .-..+.+++..+|+||.--..
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~----------~~~s~l~~~~v~~-G~V~I~g~~sg~yL~m~~~G~v~Gs~~~- 75 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDRS----------DPGIQFQISPEGN-GEVLLRSTETGQFLRINPDGTVDGTRDR- 75 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEET-TEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred heeeeccCcEEEEECCCCcEEeecCCC----------CCCcEEEEEeccc-CEEEEEEEcccEEEEECCCCCEeeccCC-
Confidence 334456666777888899998654321 1111111111111 244443 334567888899999964211
Q ss_pred CCCcCCCCCCCcccceeeeeecCc--eEEEEEecCceEEEEeCCCCEEEe
Q 013293 205 YGNLGLGDRNDRLIPEKVATVDRE--KMVMVACGWRHTISVSSSGRLYSY 252 (446)
Q Consensus 205 ~gqlG~~~~~~~~~p~~v~~~~~~--~i~~ia~G~~~s~~l~~~G~vy~~ 252 (446)
.......++...... -+..+..| ..++++.+|++|.-
T Consensus 76 ---------s~ec~flE~~~~~~g~v~ikg~~sg--~YLamnk~G~lygs 114 (132)
T 3q7x_A 76 ---------SDPGIQFQISPEGNGEVLLRSTETG--QFLRINPDGTVDGT 114 (132)
T ss_dssp ---------CCGGGCEEEEEEETTEEEEEETTTC--CEEEECTTSBEEEE
T ss_pred ---------CCCceeEEEEeecCcEEEEEeccCC--eEEEECCCCcCcCC
Confidence 111111122222211 22223334 48899999999964
No 115
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=27.21 E-value=2.3e+02 Score=22.24 Aligned_cols=105 Identities=12% Similarity=0.132 Sum_probs=52.8
Q ss_pred EEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEE-ecCceEEEEeCCCCEEEeeCCC
Q 013293 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVA-CGWRHTISVSSSGRLYSYGWSK 256 (446)
Q Consensus 178 i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia-~G~~~s~~l~~~G~vy~~G~n~ 256 (446)
+.--.|...+-+-+..||+|-.-.+. .+...-.++..... .++.|. .-..+.+++..+|+||.--...
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~----------~~~~s~l~~~~v~~-G~V~I~g~~sg~yL~m~~~G~v~Gs~~~s 76 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDR----------SDPGIQFQISPEGN-GEVLLRSTETGQFLRINPDGTVDGTRDRS 76 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEEET-TEEEEEETTTCCEEEECTTSBEEEECC-C
T ss_pred heeeeccCcEEEEECCCCcEEeecCC----------CCCCcEEEEEeccc-CEEEEEEEcccEEEEECCCCCEeeccCCC
Confidence 44445666777788889999865421 11111122222222 244443 3344678889999999753210
Q ss_pred CCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEE
Q 013293 257 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYG 303 (446)
Q Consensus 257 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~ 303 (446)
+.........+ ......++.+..| ..++++.+|++|.
T Consensus 77 -------~ec~flE~~~~-~~g~v~ikg~~sg--~YLamnk~G~lyg 113 (132)
T 3q7x_A 77 -------DPGIQFQISPE-GNGEVLLRSTETG--QFLRINPDGTVDG 113 (132)
T ss_dssp -------CGGGCEEEEEE-ETTEEEEEETTTC--CEEEECTTSBEEE
T ss_pred -------CCceeEEEEee-cCcEEEEEeccCC--eEEEECCCCcCcC
Confidence 00001111111 1111113333334 4889999999996
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=27.11 E-value=3.5e+02 Score=24.41 Aligned_cols=230 Identities=7% Similarity=-0.052 Sum_probs=0.0
Q ss_pred ceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCC
Q 013293 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (446)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~ 109 (446)
+.+++..+|..........+.+-.=+......-..+.......-..++-...+.++...+++.|+.| +.
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~-----------d~ 103 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVI-----------DT 103 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE-----------ET
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEE-----------EC
Q ss_pred CCceeeeeecccCCCCEEEEEcCCceE-EEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeE
Q 013293 110 SDLFTPLPIKALHSLRVKQIACGDSHC-LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHS 188 (446)
Q Consensus 110 ~~~~~p~~v~~l~~~~I~~I~~G~~h~-~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs 188 (446)
........+.......-..++....+. +.-..++.|+.|-.... .....+..-....-..+.....+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-----------~~~~~~~~~~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-----------AVINTVSVGRSPKGIAVTPDGTKV 172 (391)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----------EEEEEEECCSSEEEEEECTTSSEE
T ss_pred CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----------cEEEEEecCCCcceEEECCCCCEE
Q ss_pred -EEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCc--eEEEEeCCCCEEEeeCC--CCCCCCCC
Q 013293 189 -VAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWR--HTISVSSSGRLYSYGWS--KYGQLGHG 263 (446)
Q Consensus 189 -~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--~s~~l~~~G~vy~~G~n--~~gqlG~~ 263 (446)
+.-..++.|+.| .+...++........ ..+++..+|+....+.. ..+.+-.-
T Consensus 173 ~~~~~~~~~v~~~-----------------------d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 173 YVANFDSMSISVI-----------------------DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp EEEETTTTEEEEE-----------------------ETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred EEEeCCCCEEEEE-----------------------ECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEE
Q ss_pred CCCCceeeEEecccCCCcEEEEecCCCee-EEEeCCCcEEEe
Q 013293 264 DFKDHLVPCQLEALRESFISQISGGWRHT-MAVTSDGKLYGW 304 (446)
Q Consensus 264 ~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~-~~lt~~G~v~~w 304 (446)
+.........+..-....-..++.-..+. +....++.|+.|
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEE
No 117
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=27.01 E-value=3.1e+02 Score=23.77 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=11.8
Q ss_pred eeEEEeCCCcEEEee
Q 013293 291 HTMAVTSDGKLYGWG 305 (446)
Q Consensus 291 h~~~lt~~G~v~~wG 305 (446)
..++++.+|++|+-.
T Consensus 221 ~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA 235 (296)
T ss_dssp CSEEEBTTSCEEEEE
T ss_pred CeEEECCCCCEEEEc
Confidence 467888888888866
No 118
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=26.77 E-value=4e+02 Score=24.95 Aligned_cols=121 Identities=13% Similarity=0.058 Sum_probs=66.3
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC-----CceEEEEecCCcEEEEeC
Q 013293 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (446)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G-----~~h~~~lt~~G~vy~wG~ 150 (446)
++.+..+.+++|+. |++|-+-...-=..|.... -......+....+.+|+.+..- ..+.+++|++|.+.-.-.
T Consensus 53 ~~~t~d~ll~fT~~-G~~~~~~~~eip~~~r~a~-G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l 130 (370)
T 3l6v_A 53 LVNTHDTLLTFTSS-GKVFWLPVHQLPEAGSNAR-GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPL 130 (370)
T ss_dssp EECTTCEEEEEETT-SEEEEEEGGGSCBCCTTSC-CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EecCCCEEEEEeCC-CeEEEEEHHHCcCCCcccC-CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEH
Confidence 33455567778888 9999887544322221110 0000111222356788887653 347889999999887765
Q ss_pred CCCCCcCCCCCCCcccceeeccc-CCccEEE--EEeCCCeEEEEEcCCcEEEEeCCCC
Q 013293 151 NQNGQLGLGTTEDSLVPQKLQAF-EGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRY 205 (446)
Q Consensus 151 n~~gqlg~~~~~~~~~p~~v~~~-~~~~i~~--ia~G~~hs~~lt~~G~vy~~G~n~~ 205 (446)
..+-.... . -.....+ ++..++. +..+..+.+++|++|++.-+-...-
T Consensus 131 ~e~~~~~~---~----G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v 181 (370)
T 3l6v_A 131 SEFAFRLA---R----GKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 181 (370)
T ss_dssp GGGCSCCT---T----CEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGS
T ss_pred HHhhcccC---C----ceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEcccc
Confidence 44322110 0 0011111 1223333 3356678999999999988765443
No 119
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=25.66 E-value=4.2e+02 Score=24.81 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=69.8
Q ss_pred CCCEEEE--EecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec-----CCeeEEEEcCC
Q 013293 18 FRPVLLI--SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG-----ADHTTAYSESC 90 (446)
Q Consensus 18 ~~~i~~i--~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G-----~~~~~~l~~~~ 90 (446)
...+..+ +.+..+.+++++.|++|.+--..--..+... .-...-..++.-++.+|+.+..- ..+.+++|+.
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a-~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~- 122 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA-RGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN- 122 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTS-CCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT-
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCccc-CCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-
Confidence 3444444 3444557778999999977543321111110 00011111222345678876653 3367778887
Q ss_pred CEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEE--EcCCceEEEEecCCcEEEEeCCCCCCcC
Q 013293 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLG 157 (446)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I--~~G~~h~~~lt~~G~vy~wG~n~~gqlg 157 (446)
|.+.-.-..++-... .. --..+....+..++.+ ..+..+.+++|++|++.-+-.+.--.+|
T Consensus 123 G~vKrt~l~e~~~~~---~~---G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 123 GTVKKTPLSEFAFRL---AR---GKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp SEEEEEEGGGGCSCC---TT---CEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CeEEEeEHHHhhccc---CC---ceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 988877655443211 00 0011111123444443 3566789999999999988655443333
No 120
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=24.95 E-value=4.7e+02 Score=25.15 Aligned_cols=264 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCceEEEE--eCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCEE
Q 013293 18 FRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQV 93 (446)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v 93 (446)
...|..++.......+++ .||.|..|-.+. .+..........+..++...+ +.+.-.++ |.|
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~v 368 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------QHLQTLTGHSSSVWGVAFSPDGQTIASASDD-KTV 368 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTS-------------CEEEEECCCSSCEEEEEECTTSSEEEEEETT-SEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------------CeeEEEeCCCCCEEEEEECCCCCEEEEEeCC-CEE
Q ss_pred EEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcCCc--eEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeec
Q 013293 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS--HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (446)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G~~--h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~ 171 (446)
..|-.+. ............|..++...+ ..+....|+.|+.| +...........
T Consensus 369 ~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~-----------~~~~~~~~~~~~ 424 (577)
T 2ymu_A 369 KLWNRNG-------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-----------NRNGQLLQTLTG 424 (577)
T ss_dssp EEEETTC-------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE-----------CTTCCEEEEEEC
T ss_pred EEEcCCC-------------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE-----------eCCCCEEEEecC
Q ss_pred ccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecCceEEEEe--CCCCE
Q 013293 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVS--SSGRL 249 (446)
Q Consensus 172 ~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~--~~G~v 249 (446)
.-....-..++......+.-..|+.|..| ................|..++...+..++++ .++.|
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~d~~v~~w-------------~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i 491 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASDDKTVKLW-------------NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEE-------------ETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred CCCCeEEEEECCCCCEEEEEcCCCEEEEE-------------ECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Q ss_pred EEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecC
Q 013293 250 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP 329 (446)
Q Consensus 250 y~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 329 (446)
+.|-. ................-..++.-..+.+.-..||.|+.|-... .+...-..
T Consensus 492 ~iw~~-----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-------------~~~~~~~~ 547 (577)
T 2ymu_A 492 KLWNR-----------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTG 547 (577)
T ss_dssp EEEET-----------TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-------------CEEEEEEC
T ss_pred EEEcC-----------CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC-------------CEEEEEcC
Q ss_pred CCCcEEEEEecCCeEEEEE--CCCCEEEE
Q 013293 330 LDQKVVQISCGWRHTLAVT--ERQNVFSW 356 (446)
Q Consensus 330 ~~~~i~~i~~G~~h~~al~--~~g~v~~w 356 (446)
....|..++...+-.++++ .|+.|+.|
T Consensus 548 h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 548 HSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEe
No 121
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=24.82 E-value=5.6e+02 Score=26.43 Aligned_cols=124 Identities=12% Similarity=0.094 Sum_probs=68.5
Q ss_pred EecCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC--CCeeEEEeCCCcEEEeeeCCCCC
Q 013293 234 ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQ 311 (446)
Q Consensus 234 a~G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~v~~wG~n~~Gq 311 (446)
+...++.+++|+.|++|..--.+--. ....-......+..-.+.+|..+... ..+.++.|++|.+.-.=...+-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~ 587 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 587 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc
Confidence 34455788999999999876433211 11011111112222245667777654 34567778899887654433211
Q ss_pred CcCCCCCCccccEEEecCCCCcEEEE--E-ecCCeEEEEECCCCEEEEeCCCCCCCCC
Q 013293 312 VGVGDNVDHCSPVQVKFPLDQKVVQI--S-CGWRHTLAVTERQNVFSWGRGTNGQLGH 366 (446)
Q Consensus 312 LG~g~~~~~~~p~~v~~~~~~~i~~i--~-~G~~h~~al~~~g~v~~wG~n~~gqLG~ 366 (446)
.....-..+.+..+..++.+ . .+..+.++++++|.+..+-.++--.+|.
T Consensus 588 ------~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 588 ------RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp ------CSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred ------cCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 11111222333333344432 2 3677899999999999998776555554
No 122
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=23.89 E-value=4e+02 Score=23.98 Aligned_cols=194 Identities=8% Similarity=-0.007 Sum_probs=100.4
Q ss_pred CCCCEEEEEecCCc---eEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecC-CCCCcEEEEEecC---CeeEEEEcC
Q 013293 17 PFRPVLLISAGASH---SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA-LDGHEIVSVTCGA---DHTTAYSES 89 (446)
Q Consensus 17 ~~~~i~~i~~G~~~---~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~-~~~~~i~~i~~G~---~~~~~l~~~ 89 (446)
-...|.+++.-... .+.-..||.|..|=.... .....+.. -....|..++... ...+....+
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 34667777766554 333336788888865421 11112211 1224677777654 344444566
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCceeeeeecccC--CCCEEEEEc--CCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcc
Q 013293 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (446)
Q Consensus 90 ~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~--~~~I~~I~~--G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~ 165 (446)
+.|..|-... . ....+.... ...|..++. .....+.-+.||.|+.|-.. ++
T Consensus 141 -~~i~iwd~~~--~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~---------- 195 (383)
T 3ei3_B 141 -GATTLRDFSG--S----------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH---------- 195 (383)
T ss_dssp -TEEEEEETTS--C----------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC----------
T ss_pred -CEEEEEECCC--C----------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC----------
Confidence 9999996431 0 111111111 234555543 34566667788999999752 11
Q ss_pred cceeecccCCccEEEEEeCCC---eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC---ce
Q 013293 166 VPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW---RH 239 (446)
Q Consensus 166 ~p~~v~~~~~~~i~~ia~G~~---hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~---~~ 239 (446)
....+.. ....|..++.... ..+.-..||.|..|-....... ..+.... .....|..++... ..
T Consensus 196 ~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~-~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 196 EIFKEKL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--------NSYIAEM-PHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp EEEEEEC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--------TCEEEEE-ECSSCEEEEEECTTTSCE
T ss_pred EEEEecc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--------cceEEEe-cCCCceEEEEEcCCCCCE
Confidence 0111111 1235666665443 4455567889999954321100 0111111 1234566666544 45
Q ss_pred EEEEeCCCCEEEeeCCC
Q 013293 240 TISVSSSGRLYSYGWSK 256 (446)
Q Consensus 240 s~~l~~~G~vy~~G~n~ 256 (446)
.+.-..+|.|+.|-...
T Consensus 266 l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEEESSSEEEEEETTB
T ss_pred EEEEcCCCcEEEEECCC
Confidence 55666788999986543
No 123
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.37 E-value=3.8e+02 Score=23.51 Aligned_cols=157 Identities=12% Similarity=0.089 Sum_probs=82.1
Q ss_pred EEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEE--EEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCC
Q 013293 136 CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDR 213 (446)
Q Consensus 136 ~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~ 213 (446)
.+++|++|.|-.-....++. ..+..-++..+.. .....++.+++|+.|++|.+-....-. ...
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~------------~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~---~r~ 69 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDA------------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS---ARG 69 (256)
T ss_dssp EEEEETTSEEEEEESSCCCS------------TTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCC---SSS
T ss_pred EEEEeCCCEEEEeeCCcCCc------------eeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCC---cCC
Confidence 56788888876554332211 0111112223333 345667899999999999886543200 000
Q ss_pred CCcccceeeeeecCceEEEEEec--CceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEE--Ee-cC
Q 013293 214 NDRLIPEKVATVDREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--IS-GG 288 (446)
Q Consensus 214 ~~~~~p~~v~~~~~~~i~~ia~G--~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--Ia-~G 288 (446)
.-......+....+++|+.+... ..+.+++|++|.+.-.-..++-....+. ..-..+. .+..+.. +. .+
T Consensus 70 ~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G----~~~i~L~--~~d~lv~~~~~~~~ 143 (256)
T 1zvt_A 70 QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG----KALITLP--ENAHVMPPVVIEDA 143 (256)
T ss_dssp CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTC----EECBCCC--TTCCBCCCEECCCT
T ss_pred CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCc----eEEEEEC--CCCEEEEEEEecCC
Confidence 11111112333345678777663 3457788999988777654442111110 0000111 1111222 22 36
Q ss_pred CCeeEEEeCCCcEEEeeeCCCCCCc
Q 013293 289 WRHTMAVTSDGKLYGWGWNKFGQVG 313 (446)
Q Consensus 289 ~~h~~~lt~~G~v~~wG~n~~GqLG 313 (446)
..+.+++|++|++.-+-.+..-.+|
T Consensus 144 ~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 144 SDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred CCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 6788999999999888766554443
No 124
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=23.37 E-value=2.8e+02 Score=22.02 Aligned_cols=102 Identities=13% Similarity=0.231 Sum_probs=0.0
Q ss_pred EcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcC
Q 013293 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLG 209 (446)
Q Consensus 130 ~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG 209 (446)
.|-..+-+-+..||+|- |.....+...--.+.......|.--.+...+.+++..+|+|| |
T Consensus 15 ~~~~g~~LqI~~dG~V~----------Gt~~~~~~~s~l~~~sv~~G~V~I~gv~sg~yL~m~~~G~v~----------G 74 (143)
T 3snv_A 15 YKKGGQYLRINPDGTVD----------GTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVD----------G 74 (143)
T ss_dssp ----CCEEEECTTSBEE----------EESCTTCTTSEEEEEEEETTEEEEEETTTTEEEEECTTSBEE----------E
T ss_pred EEcCCEEEEECCCCCEe----------eecCCCCCceEEEEEeccCCeEEEEEEcccEEEeECCCCCEe----------e
Q ss_pred CCCCCCcccceeeeeecCceEEEEEecCceEEEEeCCCCEEE
Q 013293 210 LGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYS 251 (446)
Q Consensus 210 ~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~s~~l~~~G~vy~ 251 (446)
...........++.......+.--+.-....++++.+|++|.
T Consensus 75 s~~~~~ec~flE~~~e~~g~v~i~~~~sg~Ylamnk~Grl~G 116 (143)
T 3snv_A 75 TRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDG 116 (143)
T ss_dssp ECCTTCTTSEEEEEECSTTEEEEEETTTCCEEEECTTSBEEE
T ss_pred cccCCCcceEEEEEecCCcEEEEEEeeCCEEEEEcCCCcCcC
No 125
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=22.44 E-value=3.9e+02 Score=23.29 Aligned_cols=278 Identities=10% Similarity=0.046 Sum_probs=121.5
Q ss_pred CCCEEEEEecCCc-eEEEE--eCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCC--eeEEEEcCCCE
Q 013293 18 FRPVLLISAGASH-SVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQ 92 (446)
Q Consensus 18 ~~~i~~i~~G~~~-~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~ 92 (446)
...|.+|+.-... .++++ .||.|.+|=-.... .....|......-...|..+....+ +.+.-..| +.
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~-------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-~~ 109 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE-------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GT 109 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS-------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC-------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc-cc
Confidence 3568888876432 34444 68999999643211 1111122111111235666665433 34444566 88
Q ss_pred EEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEE--EcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceee
Q 013293 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (446)
Q Consensus 93 v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I--~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v 170 (446)
|+.|-...... ...... ....+..+ .......+.-..||.+..|-....... ...
T Consensus 110 i~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~-----------~~~ 166 (340)
T 4aow_A 110 LRLWDLTTGTT-----------TRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY-----------TVQ 166 (340)
T ss_dssp EEEEETTTTEE-----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-----------EEC
T ss_pred ceEEeecccce-----------eeeecC-CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE-----------EEE
Confidence 98886433211 111111 11122222 223344555667888988854321110 000
Q ss_pred cccCCccEEEEEe--CCC--eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee--cCceEEEEEecC--ceEEE
Q 013293 171 QAFEGVSIKMVAA--GAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV--DREKMVMVACGW--RHTIS 242 (446)
Q Consensus 171 ~~~~~~~i~~ia~--G~~--hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~ia~G~--~~s~~ 242 (446)
.......+..++. ... ..+.-..|+.|..|-.... ..+..+ ....|..|+... ...+.
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~--------------~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC--------------KLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC--------------ceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 0001123333332 222 2233456888888853221 111111 123455555443 23344
Q ss_pred EeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecC-CCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCcc
Q 013293 243 VSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHC 321 (446)
Q Consensus 243 l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~ 321 (446)
-..||.|..|-..... ....+.. ...|..+... ..+.++...++.|+.|-....-.+..-...
T Consensus 233 ~s~Dg~i~iwd~~~~~-----------~~~~~~~--~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--- 296 (340)
T 4aow_A 233 GGKDGQAMLWDLNEGK-----------HLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE--- 296 (340)
T ss_dssp EETTCEEEEEETTTTE-----------EEEEEEC--SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC---
T ss_pred EeCCCeEEEEEeccCc-----------eeeeecC--CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecccc---
Confidence 4577888888543211 1111111 1224444432 334555667888888864321111000000
Q ss_pred ccEEEecCCCCcEEEEEecCC--eEEEEECCCCEEEE
Q 013293 322 SPVQVKFPLDQKVVQISCGWR--HTLAVTERQNVFSW 356 (446)
Q Consensus 322 ~p~~v~~~~~~~i~~i~~G~~--h~~al~~~g~v~~w 356 (446)
............|..++...+ ..+.-..||.|+.|
T Consensus 297 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp -------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 000000111235666654433 33344578888888
No 126
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=22.25 E-value=3.8e+02 Score=23.14 Aligned_cols=272 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred EEEEecCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC----CceEEEEecCCcEEEEe
Q 013293 74 VSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWG 149 (446)
Q Consensus 74 ~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G----~~h~~~lt~~G~vy~wG 149 (446)
..+.....+.+.-..| |.|..|- .........+..........|..++.. ....+....||.|..|-
T Consensus 17 ~~~~~~~~~l~~~~~d-g~i~iw~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSD-QHIKVFK--------LDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp EEECSSSSEEEEEETT-SEEEEEE--------ECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EEEcCCCCEEEEeeCC-CeEEEEE--------CCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Q ss_pred CCCCCCcCCCCCCCcccceeecccCCccEEEEEeC----CCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeee
Q 013293 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (446)
Q Consensus 150 ~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G----~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~ 225 (446)
...... ........+..........|..++.. ....+.-..||.|+.|-......+..-..........+...
T Consensus 88 ~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 88 EDPDQE---ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp ECTTSC---TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred cCCCcc---cccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Q ss_pred cCceEEEEEecCceEEEEeCC---CCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCCC------eeEEEe
Q 013293 226 DREKMVMVACGWRHTISVSSS---GRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR------HTMAVT 296 (446)
Q Consensus 226 ~~~~i~~ia~G~~~s~~l~~~---G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~------h~~~lt 296 (446)
... ..-..+....+ ++.+..|......+-.........+.....-....|..++.... ..+.-.
T Consensus 165 ~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 165 NHL-------QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp SCS-------CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred Ccc-------cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Q ss_pred CCCcEEEeeeCCCCCCcCCCCCCcc----------------------------------ccEEEecCCCCcEEEEEecCC
Q 013293 297 SDGKLYGWGWNKFGQVGVGDNVDHC----------------------------------SPVQVKFPLDQKVVQISCGWR 342 (446)
Q Consensus 297 ~~G~v~~wG~n~~GqLG~g~~~~~~----------------------------------~p~~v~~~~~~~i~~i~~G~~ 342 (446)
.||.|..|-.......-........ .+..........|..++....
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317 (351)
T ss_dssp TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Q ss_pred eEEEEE--CCCCEEEEeCCCCCCC
Q 013293 343 HTLAVT--ERQNVFSWGRGTNGQL 364 (446)
Q Consensus 343 h~~al~--~~g~v~~wG~n~~gqL 364 (446)
..++++ .||.|..|=.+...++
T Consensus 318 ~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp SCCEEEEETTSCEEEEEECTTSCE
T ss_pred CCEEEEecCCCcEEEEecCcCcch
No 127
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1
Probab=22.10 E-value=3e+02 Score=21.94 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=40.7
Q ss_pred ccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEE-ecCceEEEEeCCCCEEEe
Q 013293 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVA-CGWRHTISVSSSGRLYSY 252 (446)
Q Consensus 176 ~~i~~ia~G~~hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia-~G~~~s~~l~~~G~vy~~ 252 (446)
.+..++.|-..+.+.+..||+|-.-.+.. +.... .++..... .++.|. .-....+++++.|+||.-
T Consensus 14 ~R~~~LY~~~g~~LqI~~dG~V~Gt~~~~---------~~~s~-l~~~sv~~-g~V~I~gv~s~~YLcmn~~G~Lygs 80 (145)
T 1nun_A 14 VRWRKLFSFTKYFLKIEKNGKVSGTKKEN---------CPYSI-LEITSVEI-GVVAVKAINSNYYLAMNKKGKLYGS 80 (145)
T ss_dssp SEEEEEEETTSCEEEECTTSCEEEECCSC---------CTTSC-EEEEEEET-TEEEEEETTTTEEEEECTTSBEEEE
T ss_pred ceEEEEEEcCCeEEEECCCCcEeeecCCC---------CCcee-EEEEEecC-CeEEEEEcccCcEEEEcCCCCEeec
Confidence 46789999887788898999998654321 11111 12222222 233343 334467899999999985
No 128
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=22.04 E-value=4.3e+02 Score=23.62 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=57.1
Q ss_pred CcEEEEEecC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCceeeeeecccCCCCEEEEEcC--CceEEEEecCCcEE
Q 013293 71 HEIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQ 146 (446)
Q Consensus 71 ~~i~~i~~G~--~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l~~~~I~~I~~G--~~h~~~lt~~G~vy 146 (446)
..|..++... .+.+....| |.|+.|-..... ...+.....-....|..++.. ....+.-+.||.|+
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~d-~~v~vwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 125 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQD-RNAYVYEKRPDG---------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS 125 (377)
T ss_dssp SCEEEEEECTTTCCEEEEETT-SSEEEC---------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred ceEEEEEEeCCCCEEEEEeCC-CeEEEEEcCCCC---------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence 3577766643 344444556 899998543221 011111111123457777654 34566667889999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeCC--CeEEEEEcCCcEEEEeCC
Q 013293 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWG 203 (446)
Q Consensus 147 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~vy~~G~n 203 (446)
.|-....... .....+.......|..++... ...+.-..||.|+.|-..
T Consensus 126 iwd~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 126 VCYFEQENDW--------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp ECCC-----C--------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred EEEECCcccc--------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence 9864332110 011222211223566666543 345556788999999754
No 129
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=21.65 E-value=4.9e+02 Score=24.16 Aligned_cols=191 Identities=12% Similarity=0.097 Sum_probs=87.7
Q ss_pred CCCEEEEEecC--CceEEE-EeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCC-CCcEEEEEec---CCeeEEEEcCC
Q 013293 18 FRPVLLISAGA--SHSVAL-LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD-GHEIVSVTCG---ADHTTAYSESC 90 (446)
Q Consensus 18 ~~~i~~i~~G~--~~~~~l-~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~-~~~i~~i~~G---~~~~~~l~~~~ 90 (446)
..+|.+|+.-. ...+|. ..||.|..|=.... ..+..+.... ...|..|+.. ....+.-..|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-----------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D- 186 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-----------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME- 186 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-----------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-----------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-
Confidence 45688888753 233444 37899999943221 1112221111 1246666653 2233333455
Q ss_pred CEEEEEeCCCCCCcCCCCCCCceeeeeeccc--CCCCEE--EEEcCCceEEEEecCCcEEEEeCCCCCCcCCCCCCCccc
Q 013293 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVK--QIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (446)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~l--~~~~I~--~I~~G~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~ 166 (446)
|.|..|-... . ....+... ....+. .+.......+.-+.+|.|+.|-.... ++
T Consensus 187 ~~v~iwd~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~---------- 243 (435)
T 4e54_B 187 GTTRLQDFKG----------N--ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-EL---------- 243 (435)
T ss_dssp SCEEEEETTS----------C--EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BC----------
T ss_pred CEEEEeeccC----------C--ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-ee----------
Confidence 8898884321 0 01111111 111222 23333445555677889999864311 00
Q ss_pred ceeecccCCccEEEEEeCC--C-eEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEEEecC--ceEE
Q 013293 167 PQKLQAFEGVSIKMVAAGA--E-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGW--RHTI 241 (446)
Q Consensus 167 p~~v~~~~~~~i~~ia~G~--~-hs~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~~s~ 241 (446)
..+.. ....|..|+... . ..+.-..||.|..|-.........- . ........|..++... .+.+
T Consensus 244 -~~~~~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~----~-----~~~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 244 -WNLRM-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF----L-----YSLPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp -CCSBC-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC----S-----BCCBCSSCEEECCBCTTSSEEE
T ss_pred -EEEec-ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE----E-----EeeeccccccceeECCCCCeeE
Confidence 00111 123577776532 2 2333457888888854321111000 0 0000112355554332 2444
Q ss_pred EEeCCCCEEEeeC
Q 013293 242 SVSSSGRLYSYGW 254 (446)
Q Consensus 242 ~l~~~G~vy~~G~ 254 (446)
.-..||.|..|-.
T Consensus 313 s~~~D~~i~iwd~ 325 (435)
T 4e54_B 313 TTDQKSEIRVYSA 325 (435)
T ss_dssp EEESSSCEEEEES
T ss_pred EEcCCCEEEEEEC
Confidence 5567899999854
No 130
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=21.57 E-value=3.8e+02 Score=22.83 Aligned_cols=263 Identities=8% Similarity=0.011 Sum_probs=0.0
Q ss_pred ceEEEEeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEecCCeeEEEEcC-CCEEEEEeCCCCCCcCCCC
Q 013293 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSES-CMQVYSWGWGDFGRLGHGN 108 (446)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~-~g~v~~wG~n~~gqlG~~~ 108 (446)
+.++++.+|.+| .+....+.+-.-+.. ..............+..|+......+++... .+.|+.|-.. ++
T Consensus 18 ~~i~~d~~g~l~-v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~----- 88 (299)
T 2z2n_A 18 YGITVSDKGKVW-ITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GI----- 88 (299)
T ss_dssp EEEEECTTSCEE-EEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SC-----
T ss_pred cceEECCCCCEE-EEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--Cc-----
Q ss_pred CCCceeeeeecccCCCCEEEEEcC----CceEEEEecCCcEEEEeCCCCCCcCCCCCCCcccceeecccCCccEEEEEeC
Q 013293 109 SSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG 184 (446)
Q Consensus 109 ~~~~~~p~~v~~l~~~~I~~I~~G----~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ia~G 184 (446)
+..+... .-+.++++.+|++|.-......-.-... ...............+..++..
T Consensus 89 -----------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~--~g~~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 89 -----------------IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD--DGKIREYELPNKGSYPSFITLG 149 (299)
T ss_dssp -----------------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT--TCCEEEEECSSTTCCEEEEEEC
T ss_pred -----------------EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC--CCCEEEecCCCCCCCCceEEEc
Q ss_pred CCeEEEEEc--CCcEEEEeCCCCCCcCCCCCCCcccceeeeeecCceEEEE----EecCceEEEEeCCCCEEEeeCCCCC
Q 013293 185 AEHSVAVAE--DGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMV----ACGWRHTISVSSSGRLYSYGWSKYG 258 (446)
Q Consensus 185 ~~hs~~lt~--~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i----a~G~~~s~~l~~~G~vy~~G~n~~g 258 (446)
.+..+.++. ++.|+.+ .. ..++..+ ....-+.++++.+|++|.......+
T Consensus 150 ~~g~l~v~~~~~~~i~~~-----------------------~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRI-----------------------TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK 205 (299)
T ss_dssp TTSCEEEEETTTTEEEEE-----------------------CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred CCCCEEEEeCCCCEEEEE-----------------------cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce
Q ss_pred CCCCCCCCCceeeEEecccCCCcEEEEecCCCeeEEEeCCCcEEEeeeCCCCCCcCCCCCCccccEEEecCCCCcEEEEE
Q 013293 259 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS 338 (446)
Q Consensus 259 qlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~i~ 338 (446)
..-... ........+..... .-+.++++.+|++|+-.....+-.-... ........+. .....+..++
T Consensus 206 i~~~~~-~g~~~~~~~~~~~~---------~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~-~~~~~~~~i~ 273 (299)
T 2z2n_A 206 IGRITT-SGEITEFKIPTPNA---------RPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQ-IKSAEPHGIC 273 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTC---------CEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECS-SSSCCEEEEE
T ss_pred EEEECC-CCcEEEEECCCCCC---------CceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCC-CCCCccceEE
Q ss_pred ecCCeEEEEECCCCEEEE
Q 013293 339 CGWRHTLAVTERQNVFSW 356 (446)
Q Consensus 339 ~G~~h~~al~~~g~v~~w 356 (446)
....+.++-+..+.++.+
T Consensus 274 ~~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 274 FDGETIWFAMECDKIGKL 291 (299)
T ss_dssp ECSSCEEEEETTTEEEEE
T ss_pred ecCCCEEEEecCCcEEEE
No 131
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=21.00 E-value=4.6e+02 Score=23.66 Aligned_cols=245 Identities=9% Similarity=0.044 Sum_probs=114.1
Q ss_pred CCCCEEEEEecCCceEEE--EeCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEec---CCeeEEEEcCCC
Q 013293 17 PFRPVLLISAGASHSVAL--LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (446)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l--~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~i~~G---~~~~~~l~~~~g 91 (446)
....|..++.......++ ..||.|..|-...... .......+... ...|..++.. ....+.-..+ |
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d-g 136 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------AINSMARFSNH-SSSVKTVKFNAKQDNVLASGGNN-G 136 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------CCCEEEECCCS-SSCCCEEEECSSSTTBEEEECSS-S
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------cccchhhccCC-ccceEEEEEcCCCCCEEEEEcCC-C
Confidence 456788887654433333 3688898885433100 00011111111 1345556554 3334444455 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCceeeeeec--ccCCCCEEEEEcCC---ceEEEEecCCcEEEEeCCCCCCcCCCCCCCccc
Q 013293 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (446)
Q Consensus 92 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~--~l~~~~I~~I~~G~---~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~ 166 (446)
.|+.|-........ ....+..+. ......|..++... ...+.-..+|.|+.|-......
T Consensus 137 ~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----------- 200 (416)
T 2pm9_A 137 EIFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----------- 200 (416)
T ss_dssp CEEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-----------
T ss_pred eEEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-----------
Confidence 99999654322100 000111110 11223466665543 3444456789999997543110
Q ss_pred ceeecccC-----CccEEEEEeCCC---eEEEEEcCC---cEEEEeCCCCCCcCCCCCCCcccceeeee-ecCceEEEEE
Q 013293 167 PQKLQAFE-----GVSIKMVAAGAE---HSVAVAEDG---ELYGWGWGRYGNLGLGDRNDRLIPEKVAT-VDREKMVMVA 234 (446)
Q Consensus 167 p~~v~~~~-----~~~i~~ia~G~~---hs~~lt~~G---~vy~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~ia 234 (446)
...+.... ...|..++.... ..+.-..++ .|+.|-.....+. ..... .....|..++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-----------LQTLNQGHQKGILSLD 269 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-----------SBCCCSCCSSCEEEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-----------cEEeecCccCceeEEE
Confidence 11111110 335666665433 444455666 8888864432111 11101 1123456665
Q ss_pred e---cCceEEEEeCCCCEEEeeCCCCCCCCCCCCCCceeeEEecccCCCcEEEEecCC---CeeEEEeCCCcEEEeeeCC
Q 013293 235 C---GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVTSDGKLYGWGWNK 308 (446)
Q Consensus 235 ~---G~~~s~~l~~~G~vy~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~---~h~~~lt~~G~v~~wG~n~ 308 (446)
. .....+.-..+|.|+.|-..... ....+.. ....|..++... ...+.-..||.|..|-...
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~-----------~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAE-----------QLSQFPA-RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCC-----------EEEEEEC-SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCc-----------cceeecC-CCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 4 34456666778999999532210 1111111 112244444333 3344445688888887654
Q ss_pred C
Q 013293 309 F 309 (446)
Q Consensus 309 ~ 309 (446)
.
T Consensus 338 ~ 338 (416)
T 2pm9_A 338 L 338 (416)
T ss_dssp C
T ss_pred C
Confidence 3
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=20.03 E-value=4.5e+02 Score=23.07 Aligned_cols=22 Identities=5% Similarity=0.078 Sum_probs=11.8
Q ss_pred EEEEecCCeEEEEECCCC-EEEE
Q 013293 335 VQISCGWRHTLAVTERQN-VFSW 356 (446)
Q Consensus 335 ~~i~~G~~h~~al~~~g~-v~~w 356 (446)
..+..+....++++.+|+ +|.-
T Consensus 267 ~~~~~~~~~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 267 AKVAAPESLAVLFNPARNEAYVT 289 (353)
T ss_dssp EEEECSSCCCEEEETTTTEEEEE
T ss_pred EEEEcCCCceEEECCCCCEEEEE
Confidence 334444445566666666 4543
Done!