Query 013294
Match_columns 446
No_of_seqs 330 out of 2106
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 4.8E-47 1.6E-51 378.6 25.8 295 89-422 6-304 (320)
2 3v5u_A Uncharacterized membran 99.8 4.6E-20 1.6E-24 183.9 13.8 145 275-424 4-148 (320)
3 2oar_A Large-conductance mecha 40.7 13 0.00046 32.9 2.4 32 332-363 31-69 (174)
4 2kdc_A Diacylglycerol kinase; 19.4 2.9E+02 0.0098 22.7 6.8 41 79-119 43-84 (121)
5 3hzq_A Large-conductance mecha 8.8 2.1E+02 0.0071 23.5 2.8 29 334-362 30-65 (114)
6 3lae_A UPF0053 protein HI0107; 6.4 1.7E+02 0.0059 21.7 1.2 24 111-134 20-51 (81)
7 3gia_A Uncharacterized protein 6.3 1.3E+03 0.044 21.9 8.1 20 231-250 407-426 (444)
8 2fvh_A Urease gamma subunit; p 6.0 1.1E+03 0.036 19.3 5.7 45 370-414 20-65 (120)
9 3llb_A Uncharacterized protein 6.0 1.8E+02 0.0063 21.7 1.1 16 119-134 36-51 (83)
10 4fur_A Urease subunit gamma 2; 5.6 1.1E+03 0.038 18.7 5.8 46 368-413 2-48 (104)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=4.8e-47 Score=378.62 Aligned_cols=295 Identities=17% Similarity=0.151 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--Ccccchhhhhcc-chhHHHHHHHHhhCCCccchhhhhhhHHHHHHHHH
Q 013294 89 PWVFALSLLGLTPLAERVSFLTEQIAFYTG--PTVGGLLNATCG-NATELIIAIFALYGRKIDVVKYSLLGSILSNLLLV 165 (446)
Q Consensus 89 ~~vF~~~~l~iipla~~l~~~~e~la~~~G--~~vgGll~a~~g-n~pElivsi~Al~~g~~~iv~gsilGSil~nllLv 165 (446)
...|+.+++.++++++++++++|++|+++| |.+.|++++++| |+||+++++.|..+|++++++||++|||++|++++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillv 85 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLV 85 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHH
Confidence 446888999999999999999999999999 899999999999 79999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHHHH
Q 013294 166 LGTSLFCGGIANLRKEQKYDRVTDVNSLLLLLALLCHMLPLLFKYAAASSDITAKATLQLSRASSIVMLIGYFAYLVFQL 245 (446)
Q Consensus 166 lG~~~l~gg~~~~~~~~~~~~~~~~~~~ll~lavl~lllP~~~~~~~~~~~~~~~~~~~lsr~~aiiLl~~Y~~yl~f~l 245 (446)
+|+|.++++++. ++.+ .+|....++ +.+. +++. ..| + ++|++|++|+..|+.|++|++
T Consensus 86 lG~~~li~p~~v---~~~~--~~d~~~~l~--~~~~-l~~~-----------~~~--g-is~~~g~~Ll~~Y~~yl~~~~ 143 (320)
T 3v5u_A 86 LGLSAIISPIIV---DKNL--QKNILVYLL--FVIF-AAVI-----------GID--G-FSWIDGVVLLILFIIYLRWTV 143 (320)
T ss_dssp HHHHHHHSCBCC---CHHH--HHHHHHHHH--HHHH-HHHH-----------TTT--C-BCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccc---cHHH--HHHHHHHHH--HHHH-HHHH-----------HHc--c-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999998763 2222 245433222 2221 1111 012 4 999999999999999999999
Q ss_pred hhhhhhccccCCCCCCCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeeeehhcccchhh
Q 013294 246 WTHREFFEAQEDSEDDDDVTEETPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAE 325 (446)
Q Consensus 246 ~th~~~f~~~~~~~~~~~~~~~~~~~s~~~~i~~L~~~~~~i~~~a~~lV~si~~i~~~~gis~~fiGlillpi~ts~pE 325 (446)
++|++ ++++ ++++++.+.++.+.+++++++++..+++++|++++.+++.+|+|+.++|+|++|++||+||
T Consensus 144 ~~~~~-----~~~~-----~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE 213 (320)
T 3v5u_A 144 KNGSA-----EIEE-----NNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPE 213 (320)
T ss_dssp HHTBC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHH
T ss_pred Hhccc-----cccc-----ccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHH
Confidence 99874 1111 1122345678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHhHHHHHHHHHHHHHHHHHhhhCccccccchhHHHHHHHHHHHHHHHHHhCCccchHHHH
Q 013294 326 HAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSLALAIIATAFTLQDGTSHYMKGF 405 (446)
Q Consensus 326 ~~~ai~aa~kg~~dlaig~~iGS~i~~~l~vip~~vli~~~~g~~~~l~f~~~~~~~l~~svll~~~~~~~gk~~~~~G~ 405 (446)
+++++.+++||+.|+++||++|||+||.++++|+..++. |++++ .+|...++.+.++..+.++|||++|+||.
T Consensus 214 ~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~-----p~~~~--~~d~~~~l~~~~ll~~~~~~~~i~~~eG~ 286 (320)
T 3v5u_A 214 LMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFM-----HLPAE--NVQMAVLVIMSLLLYLFAKYSKIGRWQGI 286 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHS-----CBCCC--HHHHHHHHHHHHHHHHHHHHSCBSHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhc-----cccch--HHHHHHHHHHHHHHHHHHhCCcCcHHHHH
Confidence 999999999999999999999999999999999998886 44443 56665554444444447789999999999
Q ss_pred HHHHHHHH-HHHHHHHcC
Q 013294 406 VLLLCYFV-IGACFFVSN 422 (446)
Q Consensus 406 ~Ll~~Y~i-~~~~~~~~~ 422 (446)
+|+++|++ |+...+..+
T Consensus 287 ~ll~~Y~~~y~~~~~~~~ 304 (320)
T 3v5u_A 287 LFLALYIIAIASLRMGGG 304 (320)
T ss_dssp HHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 99999999 998766533
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.82 E-value=4.6e-20 Score=183.86 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeeeehhcccchhhHHHHHHHHHhCCCcchHHHHHhHHHHHHH
Q 013294 275 SGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAV 354 (446)
Q Consensus 275 ~~i~~L~~~~~~i~~~a~~lV~si~~i~~~~gis~~fiGlillpi~ts~pE~~~ai~aa~kg~~dlaig~~iGS~i~~~l 354 (446)
..+.+++++++++..++++++++.+.+++++|+|+.++|+|++|+|||+||+++++.++++|+.|+++||++|||++|++
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCccccccchhHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHcCCC
Q 013294 355 FVVPLCVIISWIMGITMDLNFNLLETGSLALAIIATAFTLQDGTSHYMKGFVLLLCYFVIGACFFVSNRP 424 (446)
Q Consensus 355 ~vip~~vli~~~~g~~~~l~f~~~~~~~l~~svll~~~~~~~gk~~~~~G~~Ll~~Y~i~~~~~~~~~~~ 424 (446)
+++|+..++++. +++.. -..|...++++.++..+...|| .+|++|.+|+..|+.|+...+..++.
T Consensus 84 lvlG~~~li~p~---~v~~~-~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~~ 148 (320)
T 3v5u_A 84 LVLGLSAIISPI---IVDKN-LQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGSA 148 (320)
T ss_dssp THHHHHHHHSCB---CCCHH-HHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHccc---cccHH-HHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999998743 22111 1234444444444444556788 99999999999999999988876654
No 3
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=40.71 E-value=13 Score=32.87 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=22.6
Q ss_pred HHHhCC-CcchHHHHHhHHH---HHHH---HHHHHHHHH
Q 013294 332 FAFKNK-LDISLGVALGSAT---QIAV---FVVPLCVII 363 (446)
Q Consensus 332 aa~kg~-~dlaig~~iGS~i---~~~l---~vip~~vli 363 (446)
++.||+ +|+|+|.+||++. .+.+ ++.|++.++
T Consensus 31 Fi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIgl~ 69 (174)
T 2oar_A 31 FLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 69 (174)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 456666 7999999999985 2333 467877654
No 4
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=19.44 E-value=2.9e+02 Score=22.71 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHhhhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013294 79 IIGQCFGFAE-PWVFALSLLGLTPLAERVSFLTEQIAFYTGP 119 (446)
Q Consensus 79 ~~~~~~~~~~-~~vF~~~~l~iipla~~l~~~~e~la~~~G~ 119 (446)
.++-+++.+. -|.+.+..++++..++.+..+.|.+..+.++
T Consensus 43 ~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~v~~ 84 (121)
T 2kdc_A 43 VIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGS 84 (121)
T ss_dssp HHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344555543 5777777888999999999999999988773
No 5
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=8.84 E-value=2.1e+02 Score=23.46 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=19.0
Q ss_pred HhCC-CcchHHHHHhHHHH---HHH---HHHHHHHH
Q 013294 334 FKNK-LDISLGVALGSATQ---IAV---FVVPLCVI 362 (446)
Q Consensus 334 ~kg~-~dlaig~~iGS~i~---~~l---~vip~~vl 362 (446)
.||+ .|+|+|.++|++.. +.+ .+.|+..+
T Consensus 30 ~rGNViDLAVgVIIG~AF~~IV~SlV~dIImPlIg~ 65 (114)
T 3hzq_A 30 LKGNVLDLAIAVVMGAAFNKIICSLVENIIMPLIGK 65 (114)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454 69999999999852 222 45676543
No 6
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=6.44 E-value=1.7e+02 Score=21.73 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.0
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013294 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (446)
Q Consensus 111 e~la~~~G--------~~vgGll~a~~gn~pE 134 (446)
+++.+.+| +++||++..-+|..|+
T Consensus 20 ~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 20 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 51 (81)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHhCCCCCCCCCccHHHHHHHHhCCCCC
Confidence 44555555 4999999999998886
No 7
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=6.31 E-value=1.3e+03 Score=21.86 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 013294 231 IVMLIGYFAYLVFQLWTHRE 250 (446)
Q Consensus 231 iiLl~~Y~~yl~f~l~th~~ 250 (446)
.+++..++.|.++..+++|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~ 426 (444)
T 3gia_A 407 ATFIGVLIFEIIYRKVTKRT 426 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 34444555555554444433
No 8
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=6.04 E-value=1.1e+03 Score=19.31 Aligned_cols=45 Identities=11% Similarity=-0.088 Sum_probs=26.0
Q ss_pred cccccchhHHHHHHHHHHHHHHHHH-hCCccchHHHHHHHHHHHHH
Q 013294 370 TMDLNFNLLETGSLALAIIATAFTL-QDGTSHYMKGFVLLLCYFVI 414 (446)
Q Consensus 370 ~~~l~f~~~~~~~l~~svll~~~~~-~~gk~~~~~G~~Ll~~Y~i~ 414 (446)
+|.|...-.|-..++.+..+.---. +.-|.||-|.+.++..++.=
T Consensus 20 ~M~LtPrE~dkLli~~Aa~LA~rR~aRGlkLN~pEAvAlIs~~ilE 65 (120)
T 2fvh_A 20 HMRLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILE 65 (120)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred cCCcCchhHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHH
Confidence 4555444444444444444333223 34489999999999988764
No 9
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=5.95 E-value=1.8e+02 Score=21.68 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=13.7
Q ss_pred CcccchhhhhccchhH
Q 013294 119 PTVGGLLNATCGNATE 134 (446)
Q Consensus 119 ~~vgGll~a~~gn~pE 134 (446)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (83)
T 3llb_A 36 DTVGGLVMSAFGHLPK 51 (83)
T ss_dssp SBHHHHHHHHHSSCCC
T ss_pred cCHHHHHHHHhCcCCC
Confidence 4999999998888885
No 10
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=5.57 E-value=1.1e+03 Score=18.73 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHH
Q 013294 368 GITMDLNFNLLETGSLALAIIATAFTLQDG-TSHYMKGFVLLLCYFV 413 (446)
Q Consensus 368 g~~~~l~f~~~~~~~l~~svll~~~~~~~g-k~~~~~G~~Ll~~Y~i 413 (446)
+.+|.|...-.|-..++.+..+.---..+| |.||-|.+.++..++.
T Consensus 2 ~~~M~LtPrE~dkLli~~aa~lA~rR~~RGlkLN~pEAvAlIs~~v~ 48 (104)
T 4fur_A 2 PGSMHLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVL 48 (104)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCcChHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHH
Done!