Query 013294
Match_columns 446
No_of_seqs 330 out of 2106
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 07:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013294.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013294hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 8.1 35 0.0026 25.8 -0.2 30 334-363 2-37 (109)
2 d2o1ra1 d.145.1.4 (A:1-78) Hyp 7.0 73 0.0053 22.0 1.2 24 111-134 17-48 (78)
3 d2rk5a1 d.145.1.4 (A:5-88) Put 6.6 75 0.0054 22.1 1.0 24 111-134 17-48 (84)
4 d2plia1 d.145.1.4 (A:5-88) Unc 5.2 1E+02 0.0073 21.5 1.1 24 111-134 22-53 (84)
5 d2p3ha1 d.145.1.4 (A:5-102) Un 5.2 92 0.0067 22.6 0.9 16 119-134 36-51 (98)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.0 6.3E+02 0.046 20.9 6.7 38 384-421 35-76 (248)
7 d2r2za1 d.145.1.4 (A:5-88) Put 5.0 1E+02 0.0073 21.5 0.9 17 119-135 36-52 (84)
8 d1gesa3 d.87.1.1 (A:336-450) G 4.9 2.3E+02 0.017 20.5 3.2 30 308-339 64-93 (115)
9 d1xrda1 f.3.1.1 (A:1-52) Light 4.0 2E+02 0.015 18.4 1.7 13 392-404 31-43 (52)
10 d1dxla3 d.87.1.1 (A:348-470) D 3.9 3.1E+02 0.023 20.0 3.2 31 308-340 62-92 (123)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.13 E-value=35 Score=25.84 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=20.9
Q ss_pred HhCCCcchHHHHHhHHHHH---HH---HHHHHHHHH
Q 013294 334 FKNKLDISLGVALGSATQI---AV---FVVPLCVII 363 (446)
Q Consensus 334 ~kg~~dlaig~~iGS~i~~---~l---~vip~~vli 363 (446)
|-|-+|+|+|.++|++... .+ ++.|+...+
T Consensus 2 rGNVidLAVgvIiG~AF~~iV~slV~diimPlIg~i 37 (109)
T d2oara1 2 RGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 37 (109)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhhc
Confidence 4445799999999998532 22 567877655
No 2
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=7.03 E-value=73 Score=21.97 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.8
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013294 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (446)
Q Consensus 111 e~la~~~G--------~~vgGll~a~~gn~pE 134 (446)
+++.+++| +++||+++--+|.+||
T Consensus 17 ~dl~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~ 48 (78)
T d2o1ra1 17 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 48 (78)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHHCCCCCCccchHHHHHHHHHhCcCCC
Confidence 45666665 4999999999998886
No 3
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=6.58 E-value=75 Score=22.12 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.0
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013294 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (446)
Q Consensus 111 e~la~~~G--------~~vgGll~a~~gn~pE 134 (446)
+++.+++| +++||++.--+|.+|+
T Consensus 17 ~dl~~~l~~~l~~~~~dTlgG~v~~~lg~iP~ 48 (84)
T d2rk5a1 17 NDFNEYFETDLESDNVDTIAGFYLTGVGTIPS 48 (84)
T ss_dssp HHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCC
T ss_pred HHHHHHhCCCcccccchhHHHHHHHHhCcCCC
Confidence 44555555 4999999998988885
No 4
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}
Probab=5.24 E-value=1e+02 Score=21.55 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=18.3
Q ss_pred HHHHHHhC--------CcccchhhhhccchhH
Q 013294 111 EQIAFYTG--------PTVGGLLNATCGNATE 134 (446)
Q Consensus 111 e~la~~~G--------~~vgGll~a~~gn~pE 134 (446)
+++.+.+| +++||++.--+|..|+
T Consensus 22 ~dl~~~~~~~l~~~~~~TigG~i~~~l~~iP~ 53 (84)
T d2plia1 22 EDINTFFGTEYSSEEADTIGGLVIQELGHLPV 53 (84)
T ss_dssp HHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCC
T ss_pred HHHHHHhCCCCCccccHHHHHHHHHHhCcccc
Confidence 45566665 4899999988888886
No 5
>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=5.23 E-value=92 Score=22.58 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=13.9
Q ss_pred CcccchhhhhccchhH
Q 013294 119 PTVGGLLNATCGNATE 134 (446)
Q Consensus 119 ~~vgGll~a~~gn~pE 134 (446)
+++||+++.-+|.+|+
T Consensus 36 ~Tl~G~~~~~lg~iP~ 51 (98)
T d2p3ha1 36 ETISGLLFDHANALLK 51 (98)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred cCHHHHHHHHHCcCCC
Confidence 5899999999998886
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.04 E-value=6.3e+02 Score=20.94 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCccc---h-HHHHHHHHHHHHHHHHHHHc
Q 013294 384 ALAIIATAFTLQDGTSH---Y-MKGFVLLLCYFVIGACFFVS 421 (446)
Q Consensus 384 ~~svll~~~~~~~gk~~---~-~~G~~Ll~~Y~i~~~~~~~~ 421 (446)
++.+++.++++...|.- | .-|++++.+|.+|-+.+-.+
T Consensus 35 ~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~ 76 (248)
T d2r6gf1 35 LILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIA 76 (248)
T ss_dssp HHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeEEE
Confidence 34445556666554432 2 37899999999987654433
No 7
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.96 E-value=1e+02 Score=21.51 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=13.8
Q ss_pred CcccchhhhhccchhHH
Q 013294 119 PTVGGLLNATCGNATEL 135 (446)
Q Consensus 119 ~~vgGll~a~~gn~pEl 135 (446)
+++||++.--+|..|+.
T Consensus 36 ~TigG~i~~~lg~iP~~ 52 (84)
T d2r2za1 36 DTMAGYLITALGTIPDE 52 (84)
T ss_dssp CBHHHHHHHHHSSCCCT
T ss_pred hhHHHHHHHHhCcCCCC
Confidence 48999998888888863
No 8
>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}
Probab=4.90 E-value=2.3e+02 Score=20.49 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=25.1
Q ss_pred CccceeeeehhcccchhhHHHHHHHHHhCCCc
Q 013294 308 SVSFISIILLPIVGNAAEHAGAIIFAFKNKLD 339 (446)
Q Consensus 308 s~~fiGlillpi~ts~pE~~~ai~aa~kg~~d 339 (446)
+..++|..++ |.++.|++..+..+.+.+..
T Consensus 64 ~~~IlGa~iv--G~~A~ElI~~~~~ai~~~~t 93 (115)
T d1gesa3 64 EEKIVGIHGI--GFGMDEMLQGFAVALKMGAT 93 (115)
T ss_dssp TTEEEEEEEE--STTHHHHHHHHHHHHHTTCB
T ss_pred CcEEEEEEEE--CCCHHHHHHHHHHHHHcCCc
Confidence 4568888876 78999999999999988764
No 9
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=4.00 E-value=2e+02 Score=18.41 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=9.1
Q ss_pred HHHhCCccchHHH
Q 013294 392 FTLQDGTSHYMKG 404 (446)
Q Consensus 392 ~~~~~gk~~~~~G 404 (446)
..+...|.||+||
T Consensus 31 iLLSt~rfNWleg 43 (52)
T d1xrda1 31 ILLSTERFNWLEG 43 (52)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHhccCccccccC
Confidence 3456678888887
No 10
>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=3.86 E-value=3.1e+02 Score=19.99 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=26.2
Q ss_pred CccceeeeehhcccchhhHHHHHHHHHhCCCcc
Q 013294 308 SVSFISIILLPIVGNAAEHAGAIIFAFKNKLDI 340 (446)
Q Consensus 308 s~~fiGlillpi~ts~pE~~~ai~aa~kg~~dl 340 (446)
+..++|..++ |.++.|++..+..|.+++.++
T Consensus 62 ~~~ilG~~iv--G~~A~elI~~~~~ai~~~~t~ 92 (123)
T d1dxla3 62 TDKILGVHIM--APNAGELIHEAAIALQYDASS 92 (123)
T ss_dssp TCBEEEEEEE--ETTHHHHHHHHHHHHHTTCBH
T ss_pred CCEEEEEEEe--hhhHHHHHHHHHHHHHcCCcH
Confidence 4579999876 589999999999999988764
Done!