Query 013295
Match_columns 446
No_of_seqs 169 out of 1826
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:24:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.8 3.8E-21 8.3E-26 174.3 -4.3 361 12-431 73-451 (483)
2 KOG2120 SCF ubiquitin ligase, 99.7 2.7E-19 5.9E-24 155.5 -1.9 286 10-357 97-393 (419)
3 smart00579 FBD domain in FBox 99.3 1.3E-11 2.8E-16 88.3 8.0 72 374-446 1-72 (72)
4 PLN00113 leucine-rich repeat r 99.2 1.2E-11 2.7E-16 134.1 6.0 176 115-307 92-272 (968)
5 PLN00113 leucine-rich repeat r 99.1 6E-11 1.3E-15 128.8 4.4 63 291-361 304-366 (968)
6 PF08387 FBD: FBD; InterPro: 99.0 8.4E-10 1.8E-14 72.3 5.5 49 366-414 2-50 (51)
7 KOG4194 Membrane glycoprotein 98.9 1E-10 2.2E-15 111.4 -1.0 104 117-224 150-257 (873)
8 KOG4194 Membrane glycoprotein 98.9 1.7E-10 3.8E-15 109.8 -2.3 85 138-224 99-185 (873)
9 PF12937 F-box-like: F-box-lik 98.8 3.3E-09 7.2E-14 68.6 3.2 36 11-46 1-36 (47)
10 PLN03210 Resistant to P. syrin 98.7 9.4E-09 2E-13 112.6 5.8 78 117-199 590-668 (1153)
11 cd00116 LRR_RI Leucine-rich re 98.7 1.3E-09 2.7E-14 103.0 -3.2 15 139-153 49-63 (319)
12 KOG3207 Beta-tubulin folding c 98.6 1.9E-09 4E-14 99.6 -4.7 210 138-360 118-335 (505)
13 PLN03210 Resistant to P. syrin 98.5 7.3E-08 1.6E-12 105.7 5.5 80 116-199 634-715 (1153)
14 cd00116 LRR_RI Leucine-rich re 98.5 5.4E-08 1.2E-12 91.8 3.6 85 139-224 21-120 (319)
15 PF00646 F-box: F-box domain; 98.4 8.2E-08 1.8E-12 62.5 1.1 39 10-48 2-40 (48)
16 KOG3207 Beta-tubulin folding c 98.3 7.4E-08 1.6E-12 89.2 -0.9 134 116-252 146-284 (505)
17 KOG2120 SCF ubiquitin ligase, 98.3 4.3E-09 9.2E-14 92.6 -8.6 59 164-223 186-245 (419)
18 KOG2982 Uncharacterized conser 98.3 6E-07 1.3E-11 79.3 4.0 207 138-362 42-260 (418)
19 PRK15370 E3 ubiquitin-protein 98.3 1.5E-06 3.3E-11 89.8 6.9 249 116-417 178-426 (754)
20 smart00256 FBOX A Receptor for 98.3 5.8E-07 1.3E-11 56.2 2.4 34 14-47 1-34 (41)
21 PRK15387 E3 ubiquitin-protein 98.2 1.8E-06 4E-11 88.9 6.4 116 116-253 201-316 (788)
22 KOG1909 Ran GTPase-activating 98.2 6E-07 1.3E-11 81.1 1.2 174 159-362 88-281 (382)
23 KOG0444 Cytoskeletal regulator 98.1 3.2E-08 7E-13 95.5 -7.5 220 117-362 33-256 (1255)
24 PF14580 LRR_9: Leucine-rich r 98.1 1.6E-07 3.4E-12 79.0 -2.8 126 117-247 20-148 (175)
25 KOG0444 Cytoskeletal regulator 98.1 4.5E-09 9.7E-14 101.3 -13.8 140 117-266 56-200 (1255)
26 PRK15387 E3 ubiquitin-protein 98.1 6.6E-06 1.4E-10 84.8 6.6 53 117-176 223-275 (788)
27 PRK15370 E3 ubiquitin-protein 97.9 2.9E-05 6.3E-10 80.5 7.3 98 116-225 199-296 (754)
28 KOG1909 Ran GTPase-activating 97.9 5.5E-06 1.2E-10 75.0 1.6 258 140-418 29-310 (382)
29 KOG0618 Serine/threonine phosp 97.9 8.3E-07 1.8E-11 89.7 -4.1 204 106-336 256-487 (1081)
30 KOG0618 Serine/threonine phosp 97.8 4.5E-07 9.7E-12 91.6 -6.9 196 140-360 240-439 (1081)
31 PF14580 LRR_9: Leucine-rich r 97.8 5.9E-07 1.3E-11 75.5 -5.4 83 138-225 16-101 (175)
32 KOG0472 Leucine-rich repeat pr 97.8 1.1E-07 2.4E-12 87.2 -11.0 103 117-225 184-288 (565)
33 KOG4341 F-box protein containi 97.8 1.3E-06 2.7E-11 80.8 -4.3 210 139-361 214-436 (483)
34 KOG3665 ZYG-1-like serine/thre 97.4 8.3E-05 1.8E-09 76.4 2.2 59 141-199 122-184 (699)
35 KOG1947 Leucine rich repeat pr 97.4 7.9E-06 1.7E-10 81.8 -5.4 132 116-249 188-331 (482)
36 KOG1947 Leucine rich repeat pr 97.3 8.7E-06 1.9E-10 81.5 -5.6 111 139-251 186-307 (482)
37 PF13855 LRR_8: Leucine rich r 97.3 6.5E-05 1.4E-09 51.5 0.1 57 141-198 1-59 (61)
38 KOG2739 Leucine-rich acidic nu 97.2 3.7E-05 7.9E-10 67.2 -1.9 111 139-250 41-154 (260)
39 KOG4237 Extracellular matrix p 97.2 0.00013 2.9E-09 67.3 1.6 213 117-349 68-373 (498)
40 KOG1644 U2-associated snRNP A' 97.1 0.001 2.2E-08 56.1 5.7 103 141-247 42-148 (233)
41 PF07723 LRR_2: Leucine Rich R 97.1 0.00077 1.7E-08 36.9 3.0 25 164-188 1-26 (26)
42 KOG2982 Uncharacterized conser 97.0 0.00013 2.9E-09 64.9 -0.9 180 117-308 72-262 (418)
43 KOG0617 Ras suppressor protein 96.9 1.2E-05 2.6E-10 65.5 -7.2 57 296-362 128-184 (264)
44 PF13855 LRR_8: Leucine rich r 96.9 0.0007 1.5E-08 46.3 2.3 57 117-175 2-61 (61)
45 KOG0617 Ras suppressor protein 96.8 3.7E-05 8E-10 62.8 -5.3 101 118-224 35-139 (264)
46 COG5238 RNA1 Ran GTPase-activa 96.8 0.00064 1.4E-08 59.9 1.7 181 158-361 87-282 (388)
47 KOG1259 Nischarin, modulator o 96.7 0.00056 1.2E-08 61.0 0.9 204 132-362 173-410 (490)
48 PF12799 LRR_4: Leucine Rich r 96.4 0.0013 2.9E-08 41.3 1.2 35 142-176 2-37 (44)
49 PLN03150 hypothetical protein; 96.3 0.0028 6.1E-08 65.2 3.2 105 142-250 419-526 (623)
50 KOG1259 Nischarin, modulator o 96.0 0.00098 2.1E-08 59.5 -1.8 40 292-336 371-410 (490)
51 KOG1859 Leucine-rich repeat pr 95.9 0.0013 2.8E-08 65.7 -1.2 65 88-155 55-123 (1096)
52 KOG0472 Leucine-rich repeat pr 95.9 2.2E-05 4.7E-10 72.5 -12.5 21 290-310 247-267 (565)
53 KOG3665 ZYG-1-like serine/thre 95.7 0.0071 1.5E-07 62.5 2.7 134 259-414 147-283 (699)
54 PF12799 LRR_4: Leucine Rich r 95.6 0.0041 8.8E-08 39.1 0.4 37 163-201 1-37 (44)
55 PRK15386 type III secretion pr 95.5 0.038 8.2E-07 52.9 6.7 52 116-173 52-104 (426)
56 KOG0281 Beta-TrCP (transducin 95.5 0.0046 1E-07 56.0 0.5 38 7-44 71-112 (499)
57 KOG4658 Apoptotic ATPase [Sign 95.3 0.0041 8.8E-08 66.0 -0.5 56 117-173 572-628 (889)
58 COG4886 Leucine-rich repeat (L 95.1 0.0068 1.5E-07 59.0 0.4 169 139-335 114-287 (394)
59 PLN03150 hypothetical protein; 94.8 0.016 3.4E-07 59.8 2.3 84 164-252 419-503 (623)
60 KOG2123 Uncharacterized conser 94.8 0.0011 2.4E-08 58.6 -5.1 81 117-200 20-100 (388)
61 KOG4658 Apoptotic ATPase [Sign 94.5 0.012 2.5E-07 62.6 0.4 17 376-392 768-784 (889)
62 KOG2997 F-box protein FBX9 [Ge 94.5 0.013 2.8E-07 52.8 0.6 35 9-43 105-144 (366)
63 PLN03215 ascorbic acid mannose 94.3 0.025 5.4E-07 53.4 2.2 37 11-47 4-41 (373)
64 KOG1644 U2-associated snRNP A' 94.1 0.078 1.7E-06 45.0 4.3 93 291-390 60-152 (233)
65 COG4886 Leucine-rich repeat (L 93.7 0.02 4.2E-07 55.8 0.2 168 117-307 117-289 (394)
66 KOG2739 Leucine-rich acidic nu 93.6 0.0092 2E-07 52.5 -2.0 114 178-303 33-151 (260)
67 KOG4237 Extracellular matrix p 92.6 0.046 9.9E-07 51.2 0.9 83 139-223 272-357 (498)
68 KOG2123 Uncharacterized conser 92.0 0.011 2.4E-07 52.5 -3.7 16 343-358 109-124 (388)
69 COG5238 RNA1 Ran GTPase-activa 89.2 1.9 4.1E-05 38.7 7.5 129 287-418 84-226 (388)
70 KOG0274 Cdc4 and related F-box 87.7 0.24 5.1E-06 49.9 1.1 39 6-44 103-141 (537)
71 KOG0531 Protein phosphatase 1, 86.9 0.094 2E-06 51.4 -2.2 103 137-250 91-197 (414)
72 KOG3864 Uncharacterized conser 85.7 0.57 1.2E-05 40.0 2.2 71 285-361 115-186 (221)
73 PF13516 LRR_6: Leucine Rich r 84.7 0.42 9.1E-06 25.3 0.6 21 162-182 1-21 (24)
74 KOG0532 Leucine-rich repeat (L 84.3 0.061 1.3E-06 52.7 -4.7 45 132-176 89-134 (722)
75 KOG0531 Protein phosphatase 1, 84.3 0.33 7.2E-06 47.5 0.2 101 117-224 96-198 (414)
76 PF13013 F-box-like_2: F-box-l 84.2 0.63 1.4E-05 35.7 1.6 39 10-48 21-63 (109)
77 KOG1859 Leucine-rich repeat pr 83.9 0.074 1.6E-06 53.8 -4.4 34 142-175 188-221 (1096)
78 PF13504 LRR_7: Leucine rich r 83.3 0.63 1.4E-05 22.4 0.9 13 142-154 2-14 (17)
79 PRK15386 type III secretion pr 82.8 2.7 5.8E-05 40.6 5.6 53 211-270 51-104 (426)
80 smart00367 LRR_CC Leucine-rich 82.8 1.1 2.4E-05 24.2 1.8 24 324-347 1-24 (26)
81 KOG0532 Leucine-rich repeat (L 81.3 0.07 1.5E-06 52.4 -5.5 137 105-251 41-178 (722)
82 KOG3864 Uncharacterized conser 81.3 0.45 9.8E-06 40.6 -0.1 67 347-419 121-189 (221)
83 PF00560 LRR_1: Leucine Rich R 77.9 1.3 2.8E-05 22.9 1.0 14 142-155 1-14 (22)
84 KOG4579 Leucine-rich repeat (L 71.3 0.82 1.8E-05 36.6 -1.1 60 139-200 51-112 (177)
85 smart00368 LRR_RI Leucine rich 65.4 3.5 7.6E-05 22.8 1.0 21 163-183 2-22 (28)
86 PF09372 PRANC: PRANC domain; 55.3 8.1 0.00017 29.0 1.7 24 9-32 70-93 (97)
87 KOG3926 F-box proteins [Amino 52.3 6.3 0.00014 35.1 0.8 53 7-59 198-257 (332)
88 KOG4579 Leucine-rich repeat (L 42.4 4 8.7E-05 32.8 -1.7 76 118-197 55-132 (177)
89 smart00369 LRR_TYP Leucine-ric 42.2 19 0.00041 19.1 1.4 15 141-155 2-16 (26)
90 smart00370 LRR Leucine-rich re 42.2 19 0.00041 19.1 1.4 15 141-155 2-16 (26)
91 PF01827 FTH: FTH domain; Int 34.4 1.7E+02 0.0038 23.1 6.7 115 75-195 3-124 (142)
92 KOG4408 Putative Mg2+ and Co2+ 32.4 15 0.00032 34.0 -0.0 39 11-49 8-46 (386)
93 PF13306 LRR_5: Leucine rich r 29.2 56 0.0012 25.3 2.9 55 139-196 10-66 (129)
94 KOG3763 mRNA export factor TAP 26.7 13 0.00028 37.0 -1.4 37 162-198 217-254 (585)
95 smart00365 LRR_SD22 Leucine-ri 24.0 40 0.00088 18.3 0.8 14 163-176 2-15 (26)
96 PF03448 MgtE_N: MgtE intracel 20.4 1E+02 0.0023 22.8 2.8 33 2-34 37-69 (102)
97 smart00446 LRRcap occurring C- 20.0 80 0.0017 17.2 1.4 16 345-360 7-22 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.78 E-value=3.8e-21 Score=174.26 Aligned_cols=361 Identities=18% Similarity=0.185 Sum_probs=236.5
Q ss_pred CCCchHHHHHHhcCCChhhhhhccccchhHHHH------hccCCceeecccchhhhhhccccchhhhhHHHHHHHHHHhc
Q 013295 12 SCLPNAILCHILSFLPTKYAVATCVLSSTWKLV------WTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVLLS 85 (446)
Q Consensus 12 s~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 85 (446)
-.||.|++..|||+|+++..++++++|+.|..+ |..+..+.|..+.-. ..|.....+
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g-----------------~VV~~~~~R 135 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG-----------------GVVENMISR 135 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC-----------------cceehHhhh
Confidence 369999999999999999999999999999853 555443333322111 123344444
Q ss_pred CCCCcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCCccccCCCccc-ccCcccEEEecceecc-cC---CCcc
Q 013295 86 ASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIY-TCKTLEVLKLDMNFFI-KT---PPTI 160 (446)
Q Consensus 86 ~~~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~-~~---~~~~ 160 (446)
.++.++.++++.........+..... .++++++|.+..+.......-.++. .|++|++|.|.+|..- +. .-+.
T Consensus 136 cgg~lk~LSlrG~r~v~~sslrt~~~--~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 136 CGGFLKELSLRGCRAVGDSSLRTFAS--NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred hccccccccccccccCCcchhhHHhh--hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 44889999999887555444443332 4568888877665421111111222 3999999999997532 21 1344
Q ss_pred CCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeCCCCceE-EE--eccCcceEEEeeccCcccccCceEEEE
Q 013295 161 FFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYGTDSVTL-NI--PSLTLKRLRLELEAPEEDYITKYKVII 236 (446)
Q Consensus 161 ~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~-~i--~~~~L~~L~i~~~~~~~~~~~~~~~~~ 236 (446)
+|++|++|++++|.-. ..+++.+..+|..|+++.+.||.-.+. +.+ .+ .++-+.++++..|....+ .....+.-
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-e~l~~~~~~~~~i~~lnl~~c~~lTD-~~~~~i~~ 291 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL-EALLKAAAYCLEILKLNLQHCNQLTD-EDLWLIAC 291 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-HHHHHHhccChHhhccchhhhccccc-hHHHHHhh
Confidence 8999999999999866 788999999999999999999863333 222 11 234566666556632211 00111111
Q ss_pred ecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccc
Q 013295 237 RAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYA 316 (446)
Q Consensus 237 ~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~ 316 (446)
.+-.|+.++++++. ...+.....+.+.+++|+.|.+.....- . +.
T Consensus 292 ~c~~lq~l~~s~~t------------------------------~~~d~~l~aLg~~~~~L~~l~l~~c~~f--s--d~- 336 (483)
T KOG4341|consen 292 GCHALQVLCYSSCT------------------------------DITDEVLWALGQHCHNLQVLELSGCQQF--S--DR- 336 (483)
T ss_pred hhhHhhhhcccCCC------------------------------CCchHHHHHHhcCCCceEEEeccccchh--h--hh-
Confidence 23344444444332 1222355677778899999998876431 1 10
Q ss_pred cCCC-CCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCCCcc--cccccccceeEEEEEEeeCchh
Q 013295 317 NDHS-FPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPEPSL--ALGCLLSHVKIIVIGEFEGEEN 393 (446)
Q Consensus 317 ~~~~-~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~--~~~~~~~~L~~v~i~~~~g~~~ 393 (446)
.... -..++.|+.|++.-+....+..+..+-.+||.||+|.++.|....-+++.. ...|-..+|..+++.+..+.+
T Consensus 337 ~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~- 415 (483)
T KOG4341|consen 337 GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT- 415 (483)
T ss_pred hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch-
Confidence 1111 236789999999988876666799999999999999999876222222222 345778899999999887764
Q ss_pred HHHHHHHHHhhccccCeEEEEcccccCCCcHHHHHHHH
Q 013295 394 EMKLIKYLLKNGEVLNAMIIGGEQFQRRGSKEEVYEQI 431 (446)
Q Consensus 394 ~~~~~~~ll~~a~~L~~l~i~~~~~~~~~~~~~~~~~l 431 (446)
.+..+++ .++++||++.++..+...++..++...++
T Consensus 416 -d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 416 -DATLEHL-SICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred -HHHHHHH-hhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 3566776 78899999999999887777666666654
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.7e-19 Score=155.48 Aligned_cols=286 Identities=19% Similarity=0.165 Sum_probs=174.4
Q ss_pred cCCCCchHHHHHHhcCCChhhhhhccccchhHHHH------hccCCceeecccchhhhhhccccchhhhhHHHHHHHHHH
Q 013295 10 RISCLPNAILCHILSFLPTKYAVATCVLSSTWKLV------WTSLPNLCFDDRLCLEFQRNLDLSTVASTRFENFVHRVL 83 (446)
Q Consensus 10 ~is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 83 (446)
.+..||||++..||+.|+.++..+++.|||||+++ |.. +++......+- +...+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p~-----------------~l~~l 156 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHPD-----------------VLGRL 156 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccChh-----------------HHHHH
Confidence 37899999999999999999999999999999864 544 33333332221 22333
Q ss_pred hcCCCCcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCCccccCCCcccccCcccEEEecceecccC--CCccC
Q 013295 84 LSASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT--PPTIF 161 (446)
Q Consensus 84 ~~~~~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~ 161 (446)
.+++ |..|++.-... +...++.... ..+..++++||+....+.-.+.-.+..|+.|+.|.|.+..+.+. .....
T Consensus 157 ~~rg--V~v~Rlar~~~-~~prlae~~~-~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk 232 (419)
T KOG2120|consen 157 LSRG--VIVFRLARSFM-DQPRLAEHFS-PFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK 232 (419)
T ss_pred HhCC--eEEEEcchhhh-cCchhhhhhh-hhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc
Confidence 3444 33333332211 2222322222 23346999999765433334444455699999999999998873 23345
Q ss_pred CCCccEEEeeeEEe-ccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe--ccCcceEEEeeccCcccccCceEEEEec
Q 013295 162 FPSAKILHVILNTI-DNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP--SLTLKRLRLELEAPEEDYITKYKVIIRA 238 (446)
Q Consensus 162 l~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~ 238 (446)
-.+|+.|+|+++.- ...+++-++++|..|.+|+|..|.....+-...++ +++|+.|++++|...-..+
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--------- 303 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--------- 303 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh---------
Confidence 67999999998874 48888999999999999999998633221222222 4777777777764220000
Q ss_pred ccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccC
Q 013295 239 PNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAND 318 (446)
Q Consensus 239 p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~ 318 (446)
.+ ......+|.|.+++++.+- .....+...+..++-+++|.++-...-. + ...
T Consensus 304 -h~-----------~tL~~rcp~l~~LDLSD~v----------~l~~~~~~~~~kf~~L~~lSlsRCY~i~-p----~~~ 356 (419)
T KOG2120|consen 304 -HL-----------STLVRRCPNLVHLDLSDSV----------MLKNDCFQEFFKFNYLQHLSLSRCYDII-P----ETL 356 (419)
T ss_pred -HH-----------HHHHHhCCceeeecccccc----------ccCchHHHHHHhcchheeeehhhhcCCC-h----HHe
Confidence 00 0112335555555555442 2223455666677888888877543211 0 001
Q ss_pred CCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEE
Q 013295 319 HSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIV 357 (446)
Q Consensus 319 ~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~ 357 (446)
-.+...|.|..|++..+- .+..+.-+...||+|+.-.
T Consensus 357 ~~l~s~psl~yLdv~g~v--sdt~mel~~e~~~~lkin~ 393 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGCV--SDTTMELLKEMLSHLKINC 393 (419)
T ss_pred eeeccCcceEEEEecccc--CchHHHHHHHhCccccccc
Confidence 123455778888877664 4556777778888876433
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.29 E-value=1.3e-11 Score=88.26 Aligned_cols=72 Identities=35% Similarity=0.633 Sum_probs=64.6
Q ss_pred cccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEEcccccCCCcHHHHHHHHhcCcCCCCcceEEEC
Q 013295 374 GCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIGGEQFQRRGSKEEVYEQILLFERGSKTCQVRVL 446 (446)
Q Consensus 374 ~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~ 446 (446)
.|+.++|+.|+|.+|.|...|+++++++++||+.||+|+|..+... .+....+.++|..++|||+.|+|.|.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~-~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSD-DDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCC-ccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 3788899999999999999999999999999999999999988763 34557788999999999999999873
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.21 E-value=1.2e-11 Score=134.13 Aligned_cols=176 Identities=19% Similarity=0.208 Sum_probs=109.9
Q ss_pred hCCceEEEEEecCCccccCCCccc-ccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013295 115 MRNVREIEISLNDDECIELPHCIY-TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 115 ~~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
.+.++.|+|+.+.. ...+|..++ .+++|++|+|++|.+....+...+++|++|+|+++.+. +.+...+.++++|+.|
T Consensus 92 l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLS-GEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccc-ccCChHHhcCCCCCEE
Confidence 35788888876542 346787776 68999999999887765444457888999999888876 2233446778889999
Q ss_pred EEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc---eEEeCCCCceEEEEEE
Q 013295 194 SIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL---YVVHELHSLTKAVVDY 269 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~~l~~ 269 (446)
++.+|...+. ..-.+ ..++|++|++..|...+. .....-..++|+.|.+.++.... ..+.++++|+.+++..
T Consensus 170 ~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 170 DLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQ---IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred ECccCccccc-CChhhhhCcCCCeeeccCCCCcCc---CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 9988764432 22222 247888888888765321 11112245677777777654432 1245667777777655
Q ss_pred eeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCcc
Q 013295 270 GIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (446)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~ 307 (446)
+.-. ......+..+++++.|.++.+.+
T Consensus 246 n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 246 NNLT-----------GPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred ceec-----------cccChhHhCCCCCCEEECcCCee
Confidence 4321 01223355666666666665543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.09 E-value=6e-11 Score=128.84 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=28.6
Q ss_pred HhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecc
Q 013295 291 LRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 291 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
+..+++++.|.++.+.+.... ...+..+++|+.|++..+.. ...++..+..+++|+.|+++.+
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~L~~n~l--~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKI------PVALTSLPRLQVLQLWSNKF--SGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred HcCCCCCcEEECCCCccCCcC------ChhHhcCCCCCEEECcCCCC--cCcCChHHhCCCCCcEEECCCC
Confidence 344555555555544332110 11223445556665554431 1123334455566666666543
No 6
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.00 E-value=8.4e-10 Score=72.30 Aligned_cols=49 Identities=51% Similarity=0.880 Sum_probs=46.3
Q ss_pred CCCCcccccccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEE
Q 013295 366 WPEPSLALGCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIG 414 (446)
Q Consensus 366 ~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~ 414 (446)
|.++...+.|+.++|+.|++.+|.|...|+++++|+++||+.||+|+|.
T Consensus 2 W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 2 WIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 6677778999999999999999999999999999999999999999986
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.94 E-value=1e-10 Score=111.44 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=55.3
Q ss_pred CceEEEEEecCCccccCCCcccc-cCcccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013295 117 NVREIEISLNDDECIELPHCIYT-CKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
-++.|||+.+.. .++|..-|. -.++++|+|.++.+.+. ..+.+|.+|.+|.|+.+++..- =...+++.|+||.|
T Consensus 150 alrslDLSrN~i--s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 150 ALRSLDLSRNLI--SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESL 226 (873)
T ss_pred hhhhhhhhhchh--hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhh
Confidence 466677755432 233332222 46677777777766553 3444566667777777766611 12345566777777
Q ss_pred EEEeeEeCCCCceEEEe-ccCcceEEEeeccC
Q 013295 194 SIKGYIYGTDSVTLNIP-SLTLKRLRLELEAP 224 (446)
Q Consensus 194 ~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~ 224 (446)
.|..++..-. +.+... .++|+.|.+..|.+
T Consensus 227 dLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 227 DLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred hccccceeee-hhhhhcCchhhhhhhhhhcCc
Confidence 7666653322 222222 25556565555543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.86 E-value=1.7e-10 Score=109.84 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=43.0
Q ss_pred cccCcccEEEecceecccCCCccCCC-CccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe-ccCcc
Q 013295 138 YTCKTLEVLKLDMNFFIKTPPTIFFP-SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLK 215 (446)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-~~~L~ 215 (446)
++.++|+.+++..+.+...|.+.+.. +|+.|+|.++.+..-. ..-++..|.|+.|+|..+....+ .....+ ..+++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~-se~L~~l~alrslDLSrN~is~i-~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT-SEELSALPALRSLDLSRNLISEI-PKPSFPAKVNIK 176 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeecccccccc-HHHHHhHhhhhhhhhhhchhhcc-cCCCCCCCCCce
Confidence 45666666666666665555555433 3666666666555111 12244455666666655544333 222222 24555
Q ss_pred eEEEeeccC
Q 013295 216 RLRLELEAP 224 (446)
Q Consensus 216 ~L~i~~~~~ 224 (446)
+|++..|.+
T Consensus 177 ~L~La~N~I 185 (873)
T KOG4194|consen 177 KLNLASNRI 185 (873)
T ss_pred EEeeccccc
Confidence 565555543
No 9
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=3.3e-09 Score=68.63 Aligned_cols=36 Identities=28% Similarity=0.560 Sum_probs=31.4
Q ss_pred CCCCchHHHHHHhcCCChhhhhhccccchhHHHHhc
Q 013295 11 ISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWT 46 (446)
Q Consensus 11 is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~lw~ 46 (446)
|+.||+|++.+||++|+.+|.++++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999998653
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.74 E-value=9.4e-09 Score=112.59 Aligned_cols=78 Identities=12% Similarity=-0.020 Sum_probs=38.7
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCC-CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013295 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++.|++..+. ...+|..+ ...+|+.|++.++.+...+ ....+++|+.|+|+++... ..+.. ++.+++|+.|.|
T Consensus 590 ~Lr~L~~~~~~--l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYP--LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCC--CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEe
Confidence 45666554332 24445443 4456666666666555432 2335566666666654321 01111 344566666666
Q ss_pred EeeE
Q 013295 196 KGYI 199 (446)
Q Consensus 196 ~~~~ 199 (446)
.+|.
T Consensus 665 ~~c~ 668 (1153)
T PLN03210 665 SDCS 668 (1153)
T ss_pred cCCC
Confidence 5553
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.67 E-value=1.3e-09 Score=102.98 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=7.1
Q ss_pred ccCcccEEEecceec
Q 013295 139 TCKTLEVLKLDMNFF 153 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~ 153 (446)
..++|++|++.++.+
T Consensus 49 ~~~~l~~l~l~~~~~ 63 (319)
T cd00116 49 PQPSLKELCLSLNET 63 (319)
T ss_pred hCCCceEEecccccc
Confidence 344455555554433
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.9e-09 Score=99.57 Aligned_cols=210 Identities=18% Similarity=0.147 Sum_probs=128.3
Q ss_pred cccCcccEEEecceecccCC---CccCCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeCCCC-ceEEEecc
Q 013295 138 YTCKTLEVLKLDMNFFIKTP---PTIFFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYGTDS-VTLNIPSL 212 (446)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~~~~i~~~ 212 (446)
.+.++|+...|.++.+..++ .+..|++++.|+|+++-|. -..+.+++...|+||.|+|..+.+...- ....-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35678899999998887754 4558999999999999998 7778888999999999999998743220 11222458
Q ss_pred CcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc---eEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHH
Q 013295 213 TLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL---YVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVD 289 (446)
Q Consensus 213 ~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 289 (446)
+|+.|.+..|...+ .....+....|+|+.|.+.++.... .....+..|++++++....+. ..-..
T Consensus 198 ~lK~L~l~~CGls~--k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~----------~~~~~ 265 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW--KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID----------FDQGY 265 (505)
T ss_pred hhheEEeccCCCCH--HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc----------ccccc
Confidence 99999999997653 2233456678999999888764211 112223445555554432211 11112
Q ss_pred HHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEec
Q 013295 290 MLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE 360 (446)
Q Consensus 290 ~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 360 (446)
....+++|..|.++.+.+..+...+....+..-.|+.|+.|.+..+.-.+|..+-+ ++..++|+.|.+..
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITL 335 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhccc
Confidence 34456666666666665554431122222223356666666666554333433322 24556666666544
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.54 E-value=7.3e-08 Score=105.70 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=44.8
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEeccee-cccCC-CccCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013295 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNF-FIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-~~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
.+++.|+|+.+.. ...+|. +..+++|++|+|.+|. +...| ....+++|+.|++++|.... .+..-+ ++++|+.|
T Consensus 634 ~~Lk~L~Ls~~~~-l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 634 TGLRNIDLRGSKN-LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTGI-NLKSLYRL 709 (1153)
T ss_pred CCCCEEECCCCCC-cCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCCcC-CCCCCCEE
Confidence 4677777765432 234443 5567788888887764 33333 33467777777777664221 111101 45667777
Q ss_pred EEEeeE
Q 013295 194 SIKGYI 199 (446)
Q Consensus 194 ~L~~~~ 199 (446)
.+.+|.
T Consensus 710 ~Lsgc~ 715 (1153)
T PLN03210 710 NLSGCS 715 (1153)
T ss_pred eCCCCC
Confidence 766653
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=5.4e-08 Score=91.82 Aligned_cols=85 Identities=24% Similarity=0.178 Sum_probs=49.7
Q ss_pred ccCcccEEEecceecccC------CCccCCCCccEEEeeeEEec--cchHH---HHhccCCCcceEEEEeeEeCCCCceE
Q 013295 139 TCKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVILNTID--NNFSD---WLFSKCPALEDLSIKGYIYGTDSVTL 207 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~--~~~l~---~ll~~cp~Le~L~L~~~~~~~~~~~~ 207 (446)
...+|++|++.++.+... .....+++|++|+++++.+. ...+. ..+..+++|+.|.+.+|.+... ...
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD-GCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-HHH
Confidence 356688888888876331 12235667888888877665 23332 3445677888888887764321 110
Q ss_pred EEe----ccCcceEEEeeccC
Q 013295 208 NIP----SLTLKRLRLELEAP 224 (446)
Q Consensus 208 ~i~----~~~L~~L~i~~~~~ 224 (446)
.+. .++|++|++.+|..
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHHhccCcccEEEeeCCcc
Confidence 110 14477777777654
No 15
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.41 E-value=8.2e-08 Score=62.47 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=32.2
Q ss_pred cCCCCchHHHHHHhcCCChhhhhhccccchhHHHHhccC
Q 013295 10 RISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSL 48 (446)
Q Consensus 10 ~is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~lw~~~ 48 (446)
.|++||+|++.+||++|+.+|.++++.|||+|+++....
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 367899999999999999999999999999999877653
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=7.4e-08 Score=89.25 Aligned_cols=134 Identities=20% Similarity=0.154 Sum_probs=88.0
Q ss_pred CCceEEEEEecCCc-cccCCCcccccCcccEEEecceecccCCC---ccCCCCccEEEeeeEEeccchHHHHhccCCCcc
Q 013295 116 RNVREIEISLNDDE-CIELPHCIYTCKTLEVLKLDMNFFIKTPP---TIFFPSAKILHVILNTIDNNFSDWLFSKCPALE 191 (446)
Q Consensus 116 ~~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 191 (446)
.++++|+|+.+-.. -..+-..+...++|+.|+|+.+.+..+.. ...+++||+|.|.+|.+...+++.++..||.|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 47777777543210 01111112237889999999988776322 236899999999999999999999999999999
Q ss_pred eEEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCc
Q 013295 192 DLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG 252 (446)
Q Consensus 192 ~L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~ 252 (446)
.|.++++..... ....- ...+|+.|+++++..... ......-..|+|+.|.+..+...
T Consensus 226 ~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~--~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 226 VLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDF--DQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred Hhhhhcccccce-ecchhhhhhHHhhccccCCccccc--ccccccccccchhhhhccccCcc
Confidence 999999741111 11111 136899999998865432 11123445688888877765543
No 17
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.3e-09 Score=92.61 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=44.6
Q ss_pred CccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe-ccCcceEEEeecc
Q 013295 164 SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEA 223 (446)
Q Consensus 164 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~ 223 (446)
+|+.|+|+...+....+..+++.|.+|+.|.|++.+.++. -...|. ...|+.|+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeecccccc
Confidence 5888888888888888888899999999999998775543 233333 3678888887774
No 18
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=6e-07 Score=79.32 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=130.8
Q ss_pred cccCcccEEEecceecccCCC----ccCCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeC-CCCceEEEec
Q 013295 138 YTCKTLEVLKLDMNFFIKTPP----TIFFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYG-TDSVTLNIPS 211 (446)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~----~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~-~~~~~~~i~~ 211 (446)
+...-+..|.+.+|.+...-. ...+.+++.|+|.++.+. .+.+..++.+.|.|+.|+|..+... .+ +++..+.
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~ 120 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPL 120 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccc
Confidence 333345566667776654211 125678999999999988 7788888999999999999887633 22 3333455
Q ss_pred cCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEE------eCCCCceEEEEEEeeeeecCCCCchhhHH
Q 013295 212 LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVV------HELHSLTKAVVDYGIECILDYDSPEDVAQ 285 (446)
Q Consensus 212 ~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~------~~~~~L~~~~l~~~~~~~~~~~~~~~~~~ 285 (446)
.+|++|.+.+....+- ......-+.|.++.|.++++..+.+-+ .--|.+..+....|. .....
T Consensus 121 ~nl~~lVLNgT~L~w~--~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~---------~~~w~ 189 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWT--QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL---------EQLWL 189 (418)
T ss_pred cceEEEEEcCCCCChh--hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcH---------HHHHH
Confidence 7888888888765432 222334456777777666543221110 001122222222221 44556
Q ss_pred HHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEeccc
Q 013295 286 AVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 286 ~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
...++-+.+||+..+.+..++++... .+...+ .|+.+.-|.|....-..|.++ .-|..+|.|..|.+...+
T Consensus 190 ~~~~l~r~Fpnv~sv~v~e~PlK~~s--~ek~se---~~p~~~~LnL~~~~idswasv-D~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 190 NKNKLSRIFPNVNSVFVCEGPLKTES--SEKGSE---PFPSLSCLNLGANNIDSWASV-DALNGFPQLVDLRVSENP 260 (418)
T ss_pred HHHhHHhhcccchheeeecCcccchh--hcccCC---CCCcchhhhhcccccccHHHH-HHHcCCchhheeeccCCc
Confidence 77788889999999999999888655 333333 444455667766554455544 456899999999998855
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.26 E-value=1.5e-06 Score=89.77 Aligned_cols=249 Identities=14% Similarity=0.103 Sum_probs=125.3
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013295 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.+...|++.... ...+|..+ .++|+.|+|.+|.+...|.. .+++|++|+|+++.+. .+..-+ .+.|+.|.|
T Consensus 178 ~~~~~L~L~~~~--LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILG--LTTIPACI--PEQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLT--SIPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCC--cCcCCccc--ccCCcEEEecCCCCCcCChh-hccCCCEEECCCCccc--cCChhh--hccccEEEC
Confidence 345666665433 34566544 25788888888887765532 3468888888888776 111111 246888888
Q ss_pred EeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeec
Q 013295 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECIL 275 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~ 275 (446)
.+|....+ . ..+ ..+|+.|++++|..... +.. + .++|+.|.++++.....+..-.++|+.+++..+.-..
T Consensus 249 s~N~L~~L-P-~~l-~s~L~~L~Ls~N~L~~L---P~~--l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRITEL-P-ERL-PSALQSLDLFHNKISCL---PEN--L-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccCcC-C-hhH-hCCCCEEECcCCccCcc---ccc--c-CCCCcEEECCCCccccCcccchhhHHHHHhcCCcccc-
Confidence 88764433 1 111 24788888887755421 001 1 2478888887765543321111234444443321100
Q ss_pred CCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCce
Q 013295 276 DYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLES 355 (446)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~ 355 (446)
+.. ...++++.|.++.+.+..++ ..+ .++|+.|+++.+.... ++.-+ .++|+.
T Consensus 319 -----------LP~--~l~~sL~~L~Ls~N~Lt~LP-------~~l--~~sL~~L~Ls~N~L~~---LP~~l--p~~L~~ 371 (754)
T PRK15370 319 -----------LPE--TLPPGLKTLEAGENALTSLP-------ASL--PPELQVLDVSKNQITV---LPETL--PPTITT 371 (754)
T ss_pred -----------CCc--cccccceeccccCCccccCC-------hhh--cCcccEEECCCCCCCc---CChhh--cCCcCE
Confidence 000 11256777777766554332 111 2567777777654211 11111 257777
Q ss_pred EEEecccCCCCCCCcccccccccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEEccc
Q 013295 356 IVFEEGVDFEWPEPSLALGCLLSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIGGEQ 417 (446)
Q Consensus 356 L~i~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~~~~ 417 (446)
|+|..+. +...+..+...|+.+.+.+.+-. ..-.-+..+...++.+..+.+...+
T Consensus 372 LdLs~N~------Lt~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 372 LDVSRNA------LTNLPENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred EECCCCc------CCCCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 7777632 22222233334555544431111 0011123333445566666655443
No 20
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.26 E-value=5.8e-07 Score=56.22 Aligned_cols=34 Identities=38% Similarity=0.526 Sum_probs=31.7
Q ss_pred CchHHHHHHhcCCChhhhhhccccchhHHHHhcc
Q 013295 14 LPNAILCHILSFLPTKYAVATCVLSSTWKLVWTS 47 (446)
Q Consensus 14 LPdelL~~Ils~L~~~~~~r~s~vsrrWr~lw~~ 47 (446)
||+|++.+||++|+.+|.++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987654
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.23 E-value=1.8e-06 Score=88.86 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=74.7
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013295 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.+-..|+++... ...+|..+. ++|+.|.+.+|.+...|. ..++|++|+|+++.+.. +.. ..++|+.|.+
T Consensus 201 ~~~~~LdLs~~~--LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCC--CCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeec
Confidence 456667776554 346777664 478999999888877554 35889999999887761 111 2467888888
Q ss_pred EeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc
Q 013295 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL 253 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~ 253 (446)
.+|.+..+ .. ..++|+.|.+..|.... +....|+|+.|+++++....
T Consensus 270 s~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~-------LP~~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 270 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-------LPVLPPGLQELSVSDNQLAS 316 (788)
T ss_pred cCCchhhh-hh---chhhcCEEECcCCcccc-------ccccccccceeECCCCcccc
Confidence 87754433 11 22567777777775542 22234678888887765443
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.16 E-value=6e-07 Score=81.06 Aligned_cols=174 Identities=17% Similarity=0.203 Sum_probs=100.4
Q ss_pred ccCCCCccEEEeeeEEec---cchHHHHhccCCCcceEEEEeeEeCCCC-ce-----------EEEe-ccCcceEEEeec
Q 013295 159 TIFFPSAKILHVILNTID---NNFSDWLFSKCPALEDLSIKGYIYGTDS-VT-----------LNIP-SLTLKRLRLELE 222 (446)
Q Consensus 159 ~~~l~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~~-----------~~i~-~~~L~~L~i~~~ 222 (446)
+.++|.|++|+|+.+.|. ...+..++++|..|++|.|.+|...... +. -.+. .+.|+++....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 446677777788777776 4578889999999999999998532110 11 1112 266777777766
Q ss_pred cCcccc-cCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEE
Q 013295 223 APEEDY-ITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLS 301 (446)
Q Consensus 223 ~~~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 301 (446)
...... .......-..|.|+.+++..+.... ........-+..+++++.|.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~----------------------------eG~~al~eal~~~~~LevLd 219 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRP----------------------------EGVTALAEALEHCPHLEVLD 219 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccC----------------------------chhHHHHHHHHhCCcceeee
Confidence 544210 0000111122444444443322211 11124455567788888888
Q ss_pred EeCCccccccccccccCCCCCCCCccceEEEEeccc--ccHHH-HHHHHhhCCCCceEEEeccc
Q 013295 302 LSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA--CGWLS-LAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 302 L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~~-l~~ll~~~p~L~~L~i~~~~ 362 (446)
|.++++.... ...-...+|.+++|+.|.++.|-. ..... ...+-+..|+|+.|.+.++.
T Consensus 220 l~DNtft~eg--s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 220 LRDNTFTLEG--SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccchhhhHH--HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 8888665332 111234567788888888887643 12223 33355567888888887754
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.15 E-value=3.2e-08 Score=95.50 Aligned_cols=220 Identities=12% Similarity=0.083 Sum_probs=118.1
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccC-CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013295 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT-PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.++.|.|.-.. ...+|..+..|.+|++|.+..+.+... -.+..+|+|+.+.+..+.+...++..=+-...-|..|+|
T Consensus 33 ~~~WLkLnrt~--L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNRTK--LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEechhh--hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 45666554333 567788888888888888888776553 345577888888888887775555544555666777777
Q ss_pred EeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceE--EeCCCCceEEEEEEeee
Q 013295 196 KGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYV--VHELHSLTKAVVDYGIE 272 (446)
Q Consensus 196 ~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~L~~~~l~~~~~ 272 (446)
+.+..... +-.+ ...++-.|+++.|.++.. +..+.|+...|-.|+++.+.....+ +..+..|+.+.++..+-
T Consensus 111 ShNqL~Ev--P~~LE~AKn~iVLNLS~N~IetI---Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 111 SHNQLREV--PTNLEYAKNSIVLNLSYNNIETI---PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred chhhhhhc--chhhhhhcCcEEEEcccCccccC---CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence 66653322 1111 235666777777766532 3345555566666666655432221 22344455555544321
Q ss_pred eecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCC
Q 013295 273 CILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPK 352 (446)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~ 352 (446)
...-..-+-++.+++.|++++....... .+..+-.+.||..++++.+. ..-++.-+-..++
T Consensus 186 -----------~hfQLrQLPsmtsL~vLhms~TqRTl~N-----~Ptsld~l~NL~dvDlS~N~---Lp~vPecly~l~~ 246 (1255)
T KOG0444|consen 186 -----------NHFQLRQLPSMTSLSVLHMSNTQRTLDN-----IPTSLDDLHNLRDVDLSENN---LPIVPECLYKLRN 246 (1255)
T ss_pred -----------hHHHHhcCccchhhhhhhcccccchhhc-----CCCchhhhhhhhhccccccC---CCcchHHHhhhhh
Confidence 0011111223334444444443222100 01112235566666665442 2334455556677
Q ss_pred CceEEEeccc
Q 013295 353 LESIVFEEGV 362 (446)
Q Consensus 353 L~~L~i~~~~ 362 (446)
|+.|.+++..
T Consensus 247 LrrLNLS~N~ 256 (1255)
T KOG0444|consen 247 LRRLNLSGNK 256 (1255)
T ss_pred hheeccCcCc
Confidence 8888777743
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.14 E-value=1.6e-07 Score=78.96 Aligned_cols=126 Identities=25% Similarity=0.201 Sum_probs=44.5
Q ss_pred CceEEEEEecCCccccCCCccc-ccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013295 117 NVREIEISLNDDECIELPHCIY-TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
++++|+|..+.. ..+ ..+. .+.+|++|+|++|.+....+...+++|++|+++++.+..-. ..+...||+|++|.+
T Consensus 20 ~~~~L~L~~n~I--~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQI--STI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-
T ss_pred cccccccccccc--ccc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEEC
Confidence 578888876652 122 2344 46889999999999988888888999999999999988211 223357899999999
Q ss_pred EeeEeCCCCceEE-E-eccCcceEEEeeccCcccccCceEEEEecccceeEEee
Q 013295 196 KGYIYGTDSVTLN-I-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIR 247 (446)
Q Consensus 196 ~~~~~~~~~~~~~-i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 247 (446)
.++....+ ..+. + ..++|+.|++.+|.+......-..+....|+|+.|+..
T Consensus 96 ~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCCh-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99876555 3321 1 24778888887775432111111122344666666554
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.13 E-value=4.5e-09 Score=101.27 Aligned_cols=140 Identities=16% Similarity=0.085 Sum_probs=72.4
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccC---CCccCCCCccEEEeeeEEec--cchHHHHhccCCCcc
Q 013295 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKT---PPTIFFPSAKILHVILNTID--NNFSDWLFSKCPALE 191 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~--~~~l~~ll~~cp~Le 191 (446)
++++|.+.-+. ...+.-.+..++.|+.+.+..+.+... +....+..|++|+|+++.+. ... +....++-
T Consensus 56 kLEHLs~~HN~--L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~----LE~AKn~i 129 (1255)
T KOG0444|consen 56 KLEHLSMAHNQ--LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN----LEYAKNSI 129 (1255)
T ss_pred hhhhhhhhhhh--hHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh----hhhhcCcE
Confidence 56666654332 233334444566666666666655442 23345666666666666665 222 23345566
Q ss_pred eEEEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEE
Q 013295 192 DLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAV 266 (446)
Q Consensus 192 ~L~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~ 266 (446)
.|+|+++..+.+...+.|...-|-.|++++|..+.. + ...-...+|++|.+++++...+.+..+|+++.+.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L---P-PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML---P-PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhc---C-HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 666666655444344455556666666666654421 0 1111234566666666655444444455554443
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.06 E-value=6.6e-06 Score=84.84 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=35.4
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEec
Q 013295 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTID 176 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 176 (446)
+++.|.+..+. ...+|. ..++|++|++.+|.+...|. ..++|++|+|.++.+.
T Consensus 223 ~L~~L~L~~N~--Lt~LP~---lp~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 223 HITTLVIPDNN--LTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT 275 (788)
T ss_pred CCCEEEccCCc--CCCCCC---CCCCCcEEEecCCccCcccC--cccccceeeccCCchh
Confidence 67888876554 344554 24788888888887776543 2467777777776654
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.87 E-value=2.9e-05 Score=80.46 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=58.7
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013295 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
.+++.|++..+. ...+|..++ ++|++|++.+|.+...|. .-.++|++|+|+++.+.. +..-+ ..+|+.|.+
T Consensus 199 ~~L~~L~Ls~N~--LtsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNE--LKSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRITE--LPERL--PSALQSLDL 269 (754)
T ss_pred cCCcEEEecCCC--CCcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCCccCc--CChhH--hCCCCEEEC
Confidence 368888887664 346676554 578888888887766443 123578888888877661 11111 246777777
Q ss_pred EeeEeCCCCceEEEeccCcceEEEeeccCc
Q 013295 196 KGYIYGTDSVTLNIPSLTLKRLRLELEAPE 225 (446)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~ 225 (446)
.+|.+..+.. .+ .++|+.|++++|...
T Consensus 270 s~N~L~~LP~--~l-~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 270 FHNKISCLPE--NL-PEELRYLSVYDNSIR 296 (754)
T ss_pred cCCccCcccc--cc-CCCCcEEECCCCccc
Confidence 7665433201 11 246777777776543
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=5.5e-06 Score=75.00 Aligned_cols=258 Identities=14% Similarity=0.106 Sum_probs=127.7
Q ss_pred cCcccEEEecceecccC------CCccCCCCccEEEeeeEEec---c------chHHHHhccCCCcceEEEEeeEeCCC-
Q 013295 140 CKTLEVLKLDMNFFIKT------PPTIFFPSAKILHVILNTID---N------NFSDWLFSKCPALEDLSIKGYIYGTD- 203 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~---~------~~l~~ll~~cp~Le~L~L~~~~~~~~- 203 (446)
..++++|+|+++.+..- +...+-++|+.-+++..... + ..+...+.+||.|+.|+|++|.+..-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 45677777777766431 12234456666666655332 1 24566677999999999999864321
Q ss_pred -C--ceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeCCCCceEEEEEEeeeeecCCCCc
Q 013295 204 -S--VTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHELHSLTKAVVDYGIECILDYDSP 280 (446)
Q Consensus 204 -~--~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~ 280 (446)
. ..+--++..|++|.+.+|..... .-..-+..|..|... -...+.|.|+.+..+-... .
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~-----ag~~l~~al~~l~~~------kk~~~~~~Lrv~i~~rNrl----e--- 170 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPE-----AGGRLGRALFELAVN------KKAASKPKLRVFICGRNRL----E--- 170 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChh-----HHHHHHHHHHHHHHH------hccCCCcceEEEEeecccc----c---
Confidence 0 11111368899999998865311 000001111221110 1122334444443332221 0
Q ss_pred hhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccc--ccHHHHHHHHhhCCCCceEEE
Q 013295 281 EDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA--CGWLSLAHIFSRMPKLESIVF 358 (446)
Q Consensus 281 ~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~~l~~ll~~~p~L~~L~i 358 (446)
......+...++..+.++.+.+..+.+..-. .......+..+++|+.|+|.-+.. .....+..-+...|+|+.|.+
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG--~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEG--VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCch--hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 2233456777888889999998877654211 000012233556677776654321 233455566666677777777
Q ss_pred ecccCCCCC--CCcccccccccceeEEEEEEeeCc-hhHHHHHHHHHhhccccCeEEEEcccc
Q 013295 359 EEGVDFEWP--EPSLALGCLLSHVKIIVIGEFEGE-ENEMKLIKYLLKNGEVLNAMIIGGEQF 418 (446)
Q Consensus 359 ~~~~~~~~~--~~~~~~~~~~~~L~~v~i~~~~g~-~~~~~~~~~ll~~a~~L~~l~i~~~~~ 418 (446)
..|...+.. ...+...-..++|+++.+.+..-. .....++.. +..-+.|+++.+.....
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCcccc
Confidence 665422110 011111111345666655522111 111122222 23356666666665543
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.86 E-value=8.3e-07 Score=89.72 Aligned_cols=204 Identities=19% Similarity=0.205 Sum_probs=101.7
Q ss_pred HHHHHHHHHhCCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCcc-CCCCccEEEeeeEEec--cchHHH
Q 013295 106 LKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTID--NNFSDW 182 (446)
Q Consensus 106 ~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~-~l~~L~~L~L~~~~~~--~~~l~~ 182 (446)
+..|+..++ +++.+....+. ...+|..++...+|++|....|.+...|... ++++|++|+|..+.+. .+.+..
T Consensus 256 lp~wi~~~~--nle~l~~n~N~--l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 256 LPEWIGACA--NLEALNANHNR--LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred chHHHHhcc--cceEecccchh--HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh
Confidence 446665443 56666665544 3566666666677777777777766554444 5899999999999876 332222
Q ss_pred Hhc----------------------cCCCcceEEEEeeEeCCCCceE-EEeccCcceEEEeeccCcccccCceEEEEecc
Q 013295 183 LFS----------------------KCPALEDLSIKGYIYGTDSVTL-NIPSLTLKRLRLELEAPEEDYITKYKVIIRAP 239 (446)
Q Consensus 183 ll~----------------------~cp~Le~L~L~~~~~~~~~~~~-~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p 239 (446)
++- ..+.|+.|.+.++.+.+- ... -....+||.|+++.|+.... +....-..+
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~~f---pas~~~kle 407 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLNSF---PASKLRKLE 407 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc-chhhhccccceeeeeecccccccC---CHHHHhchH
Confidence 210 122344455555443321 111 11235666666666543211 011112234
Q ss_pred cceeEEeeccCCcceE--EeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCcccccccccccc
Q 013295 240 NLEQLYIRDHGPGLYV--VHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYAN 317 (446)
Q Consensus 240 ~L~~L~l~~~~~~~~~--~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~ 317 (446)
.|+.|.++|+.....+ +.++++|+.+......- ..+ .-+..++.++.++++.+.+.....
T Consensus 408 ~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l------------~~f-Pe~~~l~qL~~lDlS~N~L~~~~l----- 469 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL------------LSF-PELAQLPQLKVLDLSCNNLSEVTL----- 469 (1081)
T ss_pred HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce------------eec-hhhhhcCcceEEecccchhhhhhh-----
Confidence 5555666655443221 22333443332211100 011 134566777777777776653221
Q ss_pred CCCCCCCCccceEEEEecc
Q 013295 318 DHSFPTFPFLNRLEVEGVG 336 (446)
Q Consensus 318 ~~~~~~~~~L~~L~L~~~~ 336 (446)
....|. ++|++|+++.+.
T Consensus 470 ~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 470 PEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhCCC-cccceeeccCCc
Confidence 122233 677777777665
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.80 E-value=4.5e-07 Score=91.59 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=108.6
Q ss_pred cCcccEEEecceecccCCCcc-CCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcceEE
Q 013295 140 CKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLR 218 (446)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~L~ 218 (446)
-.+|++++++.+.+...|.+. .|++|+.+...++.+. .+..-+..-.+|+.|.+..|....+ -...-.-.+|++|+
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeee
Confidence 368999999999888766443 7999999999988874 2333344556677777777654433 22222246777777
Q ss_pred EeeccCcccccCceEEEEecccceeEEeeccCCc---ceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCC
Q 013295 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG---LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIK 295 (446)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 295 (446)
+..+...... +..+.+.--.|..|........ .+.-...+.|+.+++.. +..+..+...+.++.
T Consensus 317 L~~N~L~~lp--~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-----------N~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 317 LQSNNLPSLP--DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-----------NHLTDSCFPVLVNFK 383 (1081)
T ss_pred ehhccccccc--hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-----------Ccccccchhhhcccc
Confidence 7777543210 0000000001222222211110 01111233344433322 334446677888999
Q ss_pred CeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEec
Q 013295 296 NIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEE 360 (446)
Q Consensus 296 ~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 360 (446)
+||.|+|+.+.+..++ ...+.+++.|++|.|+.+.. ..++.-...|+.|+.|..+.
T Consensus 384 hLKVLhLsyNrL~~fp------as~~~kle~LeeL~LSGNkL---~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFP------ASKLRKLEELEELNLSGNKL---TTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred ceeeeeecccccccCC------HHHHhchHHhHHHhcccchh---hhhhHHHHhhhhhHHHhhcC
Confidence 9999999988777655 22234677788888887642 33333344455555555444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.79 E-value=5.9e-07 Score=75.51 Aligned_cols=83 Identities=17% Similarity=0.074 Sum_probs=24.5
Q ss_pred cccCcccEEEecceecccCCCcc-CCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeCCCCce-EEEeccCc
Q 013295 138 YTCKTLEVLKLDMNFFIKTPPTI-FFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYGTDSVT-LNIPSLTL 214 (446)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~~~-~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~-~~i~~~~L 214 (446)
-++..++.|+|.++.+....... .+.+|++|+|+++.+. -++ +..++.|++|.+.++....+ .. +.-..|+|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 45678899999999888754554 5889999999999988 222 45689999999999875544 21 11125788
Q ss_pred ceEEEeeccCc
Q 013295 215 KRLRLELEAPE 225 (446)
Q Consensus 215 ~~L~i~~~~~~ 225 (446)
+.|.+.+|...
T Consensus 91 ~~L~L~~N~I~ 101 (175)
T PF14580_consen 91 QELYLSNNKIS 101 (175)
T ss_dssp -EEE-TTS---
T ss_pred CEEECcCCcCC
Confidence 88888877654
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.76 E-value=1.1e-07 Score=87.21 Aligned_cols=103 Identities=21% Similarity=0.108 Sum_probs=61.5
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchH-HHHhccCCCcceEEE
Q 013295 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFS-DWLFSKCPALEDLSI 195 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l-~~ll~~cp~Le~L~L 195 (446)
.+++++..-+. ...+|..++...+|..|+|..+.+...|.+.+|..|++|++..+.+. .+ ..+.++.+.|..|++
T Consensus 184 ~L~~ld~~~N~--L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 184 RLKHLDCNSNL--LETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHhcccchhh--hhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeec
Confidence 56666664433 45677777778888888888777776677777777777777666554 11 223445666666666
Q ss_pred EeeEeCCCCceEEE-eccCcceEEEeeccCc
Q 013295 196 KGYIYGTDSVTLNI-PSLTLKRLRLELEAPE 225 (446)
Q Consensus 196 ~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~ 225 (446)
+++..... +..+ -..+|.+|+++++...
T Consensus 260 RdNklke~--Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 260 RDNKLKEV--PDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred cccccccC--chHHHHhhhhhhhcccCCccc
Confidence 66543322 1111 1245666666666443
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.75 E-value=1.3e-06 Score=80.84 Aligned_cols=210 Identities=14% Similarity=0.001 Sum_probs=93.4
Q ss_pred ccCcccEEEecceecccC----CCccCCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeCCCCc--eEEEec
Q 013295 139 TCKTLEVLKLDMNFFIKT----PPTIFFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYGTDSV--TLNIPS 211 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--~~~i~~ 211 (446)
.|++|.+|++++|....- +...++..++++.+.+|.=. .+.+..+-..|+.+-++++..|..-.... .+.-.+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 366666666666542221 22234555555555554332 44444444455555555555543110001 111123
Q ss_pred cCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCc-----ceEEeCCCCceEEEEEEeeeeecCCCCchhhHHH
Q 013295 212 LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPG-----LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQA 286 (446)
Q Consensus 212 ~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~ 286 (446)
..|+.|..++|...++ .....+.-.+++|+.+.+.++.-. ...-.+.+.|+.+++..+.. ..+..
T Consensus 294 ~~lq~l~~s~~t~~~d-~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~---------~~d~t 363 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITD-EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL---------ITDGT 363 (483)
T ss_pred hHhhhhcccCCCCCch-HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce---------ehhhh
Confidence 4555555555533211 011122234455555555554311 11123345555555444321 12224
Q ss_pred HHHHHhcCCCeeEEEEeCCccccccccccccCCC-CCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecc
Q 013295 287 VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHS-FPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 287 ~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
+..+-..++.++.|.++......-. +....+. .-....|..|+|+.+.. ........+..||+||.+++-.+
T Consensus 364 L~sls~~C~~lr~lslshce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~-i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDE--GIRHLSSSSCSLEGLEVLELDNCPL-ITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhh--hhhhhhhccccccccceeeecCCCC-chHHHHHHHhhCcccceeeeech
Confidence 4555556666666666633221100 0000000 11344566666666654 44555566677777777665443
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=8.3e-05 Score=76.39 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=42.9
Q ss_pred CcccEEEecceecccCCC----ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeE
Q 013295 141 KTLEVLKLDMNFFIKTPP----TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYI 199 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~----~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 199 (446)
.+|++|++++...-.-.+ ..-||+|++|.+++..+..+.+.++..++|+|..|+|.++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn 184 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN 184 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC
Confidence 577788877643322111 12588899999988888877788888888999999888864
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.35 E-value=7.9e-06 Score=81.77 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=75.9
Q ss_pred CCceEEEEEecCC-ccccCCCcccccCcccEEEecce-ecccC------CCccCCCCccEEEeeeEE-eccchHHHHhcc
Q 013295 116 RNVREIEISLNDD-ECIELPHCIYTCKTLEVLKLDMN-FFIKT------PPTIFFPSAKILHVILNT-IDNNFSDWLFSK 186 (446)
Q Consensus 116 ~~l~~L~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~ 186 (446)
..++.+.+..+.. ....+-.....|++|+.|+++++ ..... .....+++|+.|++.++. +.+.++..+...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 4677777654421 01112223345788888888763 21111 122356888888888887 557788887778
Q ss_pred CCCcceEEEEeeEe---CCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeecc
Q 013295 187 CPALEDLSIKGYIY---GTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDH 249 (446)
Q Consensus 187 cp~Le~L~L~~~~~---~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 249 (446)
||+||.|.+.+|.. .++ ..+.-.++.|++|++..|....+ .+...+...+|+|+.|.+.+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred CCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhhc
Confidence 88888888777752 122 22333457788888887754321 111122334666666665443
No 36
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.32 E-value=8.7e-06 Score=81.45 Aligned_cols=111 Identities=20% Similarity=0.151 Sum_probs=75.9
Q ss_pred ccCcccEEEecceecccC----CCccCCCCccEEEeeeE-Eec---cchHHHHhccCCCcceEEEEeeE-eC--CCCceE
Q 013295 139 TCKTLEVLKLDMNFFIKT----PPTIFFPSAKILHVILN-TID---NNFSDWLFSKCPALEDLSIKGYI-YG--TDSVTL 207 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~-~~~---~~~l~~ll~~cp~Le~L~L~~~~-~~--~~~~~~ 207 (446)
.+++|+.|.+.+|.-... +....+++|++|++.++ ... ......+...|++|+.|.+.+|. .. ++ ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence 389999999998854321 34458999999999873 222 22344567889999999999986 22 22 223
Q ss_pred EEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCC
Q 013295 208 NIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (446)
Q Consensus 208 ~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (446)
.-.+++|+.|.+..|....+ .+...+...+|+|++|.+.++..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCcc
Confidence 33478999999888863211 23344555678899999986543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.27 E-value=6.5e-05 Score=51.47 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=32.0
Q ss_pred CcccEEEecceecccCC--CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEee
Q 013295 141 KTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGY 198 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 198 (446)
++|++|++.+|.+...+ .+.++++|++|+++++.+. .--...+.++|+|+.|.+.+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCC
Confidence 35666666666555433 3345666666666666665 111123556667777666654
No 38
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=3.7e-05 Score=67.25 Aligned_cols=111 Identities=23% Similarity=0.060 Sum_probs=78.4
Q ss_pred ccCcccEEEecceecccCCCccCCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeCCCCceEEEe--ccCcc
Q 013295 139 TCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP--SLTLK 215 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~--~~~L~ 215 (446)
....|..|++.++.+.....+..+|+|++|.++.+.++ ..++..++..||+|+.|++.+|..+.+ .++.-. .++|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchh
Confidence 45678888888888776666668899999999999777 677777888899999999999876555 444332 36788
Q ss_pred eEEEeeccCcccccCceEEEEecccceeEEeeccC
Q 013295 216 RLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (446)
Q Consensus 216 ~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (446)
.|.+.+|........-..+..-+|+|++|+..+..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 89999886543211111223345777777765543
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.22 E-value=0.00013 Score=67.30 Aligned_cols=213 Identities=18% Similarity=0.152 Sum_probs=116.6
Q ss_pred CceEEEEEecCCccccCCCcccc-cCcccEEEecceecccC--CCccCCCCccEEEeee-EEec---cchH---------
Q 013295 117 NVREIEISLNDDECIELPHCIYT-CKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVIL-NTID---NNFS--------- 180 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~-~~~~---~~~l--------- 180 (446)
...+|+|.-+. ...+|...|. .++||.|+|+++.+... ..+.++++|.+|.+.+ +.+. .+.|
T Consensus 68 ~tveirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCC--cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 45556555444 4677876665 89999999999987653 3455888888888887 5554 1222
Q ss_pred -----------HHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcceEEEeeccCccc--------c------------
Q 013295 181 -----------DWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEED--------Y------------ 228 (446)
Q Consensus 181 -----------~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~--------~------------ 228 (446)
++.+...|+|..|.+.++.+..+ ..-.+ .-..++.+.+..+.+..+ +
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i-~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI-CKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhh-ccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 23344566677777766542221 11011 112334433332210000 0
Q ss_pred ---------------------------------------cCceEEEEecccceeEEeeccCCcce---EEeCCCCceEEE
Q 013295 229 ---------------------------------------ITKYKVIIRAPNLEQLYIRDHGPGLY---VVHELHSLTKAV 266 (446)
Q Consensus 229 ---------------------------------------~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~~~ 266 (446)
..+..-.-..|+|+++.++++....+ .+..+..++++.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 00000011124555555555443322 233444444444
Q ss_pred EEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEe---cccccHHHH
Q 013295 267 VDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEG---VGACGWLSL 343 (446)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~---~~~~~~~~l 343 (446)
++. +.....-.+.++++.+++.|.|.++.+..+. +..+.....|..|.|-. +.++...|+
T Consensus 305 L~~-----------N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~------~~aF~~~~~l~~l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 305 LTR-----------NKLEFVSSGMFQGLSGLKTLSLYDNQITTVA------PGAFQTLFSLSTLNLLSNPFNCNCRLAWL 367 (498)
T ss_pred cCc-----------chHHHHHHHhhhccccceeeeecCCeeEEEe------cccccccceeeeeehccCcccCccchHHH
Confidence 432 2233344567889999999999999887766 34444555677777653 334678888
Q ss_pred HHHHhh
Q 013295 344 AHIFSR 349 (446)
Q Consensus 344 ~~ll~~ 349 (446)
...+++
T Consensus 368 ~~Wlr~ 373 (498)
T KOG4237|consen 368 GEWLRK 373 (498)
T ss_pred HHHHhh
Confidence 888875
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.13 E-value=0.001 Score=56.12 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=59.1
Q ss_pred CcccEEEecceecccCCCccCCCCccEEEeeeEEec--cchHHHHhccCCCcceEEEEeeEeCCCCceE--EEeccCcce
Q 013295 141 KTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTID--NNFSDWLFSKCPALEDLSIKGYIYGTDSVTL--NIPSLTLKR 216 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~--~i~~~~L~~ 216 (446)
.+...++|.++.+...+.+.++++|.+|.|..+++. +..+..+ .|+|..|.+.++....+ +.+ -..+|+|+.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQEL-GDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhh-hhcchhccCCccce
Confidence 456677777777666666667778888888877776 5555544 47788888877664333 222 123566666
Q ss_pred EEEeeccCcccccCceEEEEecccceeEEee
Q 013295 217 LRLELEAPEEDYITKYKVIIRAPNLEQLYIR 247 (446)
Q Consensus 217 L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 247 (446)
|.+.++....-...-.-+.-..|+|+.|++.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehh
Confidence 6666664332111111122334555555554
No 41
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.06 E-value=0.00077 Score=36.89 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.8
Q ss_pred CccEEEeeeEEec-cchHHHHhccCC
Q 013295 164 SAKILHVILNTID-NNFSDWLFSKCP 188 (446)
Q Consensus 164 ~L~~L~L~~~~~~-~~~l~~ll~~cp 188 (446)
+||+|+|..+.|. +..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 5899999999998 568999999998
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.00013 Score=64.86 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=111.7
Q ss_pred CceEEEEEecCCcc-ccCCCcccccCcccEEEecceecccCCC-c-cCCCCccEEEeeeEEeccchHHHHhccCCCcceE
Q 013295 117 NVREIEISLNDDEC-IELPHCIYTCKTLEVLKLDMNFFIKTPP-T-IFFPSAKILHVILNTIDNNFSDWLFSKCPALEDL 193 (446)
Q Consensus 117 ~l~~L~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 193 (446)
.|++++|.++.... -++-..+-.+|.|++|+|+.+.+..... . ....+|++|.|.+..+.-......++..|.+++|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 79999998764210 1111222347999999999998865321 1 3567999999999998877788889999999999
Q ss_pred EEEeeEeC----CCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce----EEeCCCCceEE
Q 013295 194 SIKGYIYG----TDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY----VVHELHSLTKA 265 (446)
Q Consensus 194 ~L~~~~~~----~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~~L~~~ 265 (446)
++..+... +. ....-.++.+++|....|...-+ .....+.--.||+..+.+..++.... .....|.+.-+
T Consensus 152 HmS~N~~rq~n~Dd-~c~e~~s~~v~tlh~~~c~~~~w-~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 152 HMSDNSLRQLNLDD-NCIEDWSTEVLTLHQLPCLEQLW-LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhccchhhhhcccc-ccccccchhhhhhhcCCcHHHHH-HHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 99988421 11 23333467888888888853221 11223344568888888877644321 12223333322
Q ss_pred EEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccc
Q 013295 266 VVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMF 308 (446)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~ 308 (446)
.++-.. .... +-.+-+.+++.+..|.+..+++.
T Consensus 230 nL~~~~---------idsw-asvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 230 NLGANN---------IDSW-ASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhcccc---------cccH-HHHHHHcCCchhheeeccCCccc
Confidence 222110 1111 22345778999999998877654
No 43
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.92 E-value=1.2e-05 Score=65.54 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=32.3
Q ss_pred CeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEeccc
Q 013295 296 NIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 296 ~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
.++-|+++.+..++++ ..+..+.+|+.|.+. ..+...++.=+.....|+.|.|++..
T Consensus 128 tlralyl~dndfe~lp-------~dvg~lt~lqil~lr---dndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILP-------PDVGKLTNLQILSLR---DNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHhcCCCcccCC-------hhhhhhcceeEEeec---cCchhhCcHHHHHHHHHHHHhcccce
Confidence 3445677777666554 112233344444333 22445566666777788888888743
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.88 E-value=0.0007 Score=46.27 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=44.9
Q ss_pred CceEEEEEecCCccccCCCccc-ccCcccEEEecceecccCC--CccCCCCccEEEeeeEEe
Q 013295 117 NVREIEISLNDDECIELPHCIY-TCKTLEVLKLDMNFFIKTP--PTIFFPSAKILHVILNTI 175 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~ 175 (446)
++++|++..+. ...+|...+ .+++|++|+++++.+...+ .+.++++|++|+++++.+
T Consensus 2 ~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNK--LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSST--ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCC--CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 67888887664 457776554 5999999999999887653 456899999999998753
No 45
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.80 E-value=3.7e-05 Score=62.76 Aligned_cols=101 Identities=28% Similarity=0.300 Sum_probs=65.4
Q ss_pred ceEEEEEecCCccccCCCcccccCcccEEEecceecccCC-CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013295 118 VREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 118 l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
+..|.++-+. ....|+.+....+|+.|+++++.+...| ...+++.|+.|++..+++. .+.+-+..+|.||.|++.
T Consensus 35 ITrLtLSHNK--l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 35 ITRLTLSHNK--LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhcccCc--eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhcc
Confidence 3444443332 4567788888889999999999888765 4557889999988877665 112224568999999998
Q ss_pred eeEeCCCCceE---EEeccCcceEEEeeccC
Q 013295 197 GYIYGTDSVTL---NIPSLTLKRLRLELEAP 224 (446)
Q Consensus 197 ~~~~~~~~~~~---~i~~~~L~~L~i~~~~~ 224 (446)
++....- .+ ...-..|+-|.++++.+
T Consensus 111 ynnl~e~--~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 111 YNNLNEN--SLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred ccccccc--cCCcchhHHHHHHHHHhcCCCc
Confidence 8652211 11 11125667777776644
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.77 E-value=0.00064 Score=59.87 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=91.7
Q ss_pred CccCCCCccEEEeeeEEec---cchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEE
Q 013295 158 PTIFFPSAKILHVILNTID---NNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKV 234 (446)
Q Consensus 158 ~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~ 234 (446)
.+..||+|++.+|+.+.|. ...+..++++-..|++|.+.+|..+.. .--+|. ..|.+|-. ..-
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~rig-kal~~la~------------nKK 152 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRIG-KALFHLAY------------NKK 152 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc-chhHHH-HHHHHHHH------------Hhh
Confidence 4457788888888888776 567778888888889988888753211 000110 00110000 011
Q ss_pred EEecccceeEEeeccCCcce-------EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCcc
Q 013295 235 IIRAPNLEQLYIRDHGPGLY-------VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (446)
Q Consensus 235 ~~~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~ 307 (446)
.-+.|.|+.+....+...+. .+..-..|+.+.+....- + +. ....-...=+..+.+++.|.|..+++
T Consensus 153 aa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgI-r-pe----gv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 153 AADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGI-R-PE----GVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred hccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCc-C-cc----hhHHHHHHHHHHhCcceeeeccccch
Confidence 12345555554443322111 011113455555443321 1 00 01111112234578899999988866
Q ss_pred ccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhh-----CCCCceEEEecc
Q 013295 308 FALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSR-----MPKLESIVFEEG 361 (446)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~-----~p~L~~L~i~~~ 361 (446)
..... .|. ...++..++|+.|.+.-|-. ...+...+++. .|+|+.|.....
T Consensus 227 t~~gS-~~L-a~al~~W~~lrEL~lnDCll-s~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 227 TLEGS-RYL-ADALCEWNLLRELRLNDCLL-SNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhhhH-HHH-HHHhcccchhhhccccchhh-ccccHHHHHHHhhhhcCCCccccccchh
Confidence 43221 011 13346677788888876643 33444455544 577777776553
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.70 E-value=0.00056 Score=61.04 Aligned_cols=204 Identities=15% Similarity=0.108 Sum_probs=101.5
Q ss_pred cCCCcccccCcccEEEecceecc--------cC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeC
Q 013295 132 ELPHCIYTCKTLEVLKLDMNFFI--------KT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYG 201 (446)
Q Consensus 132 ~lp~~l~~~~~L~~L~L~~~~~~--------~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~ 201 (446)
.+.+.+--|-.|++|..++..-+ .. -....|++|+++.++.|.-. .+..+...-|-|+++++.+....
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~--~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE--NIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh--heeceeecCchhheeeeeccccc
Confidence 33333334666777776643211 10 11235677777777766443 23333344577777777664311
Q ss_pred CC--------------------CceE--EEec-cCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce-EEe
Q 013295 202 TD--------------------SVTL--NIPS-LTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-VVH 257 (446)
Q Consensus 202 ~~--------------------~~~~--~i~~-~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~ 257 (446)
.. .+.+ .+.. ..|+.++++.|.+... ..-.--+|.++.|.++.+....+ .++
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i----DESvKL~Pkir~L~lS~N~i~~v~nLa 326 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI----DESVKLAPKLRRLILSQNRIRTVQNLA 326 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh----hhhhhhccceeEEeccccceeeehhhh
Confidence 11 0011 1111 3456666665543211 11112246667666665544322 245
Q ss_pred CCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEeccc
Q 013295 258 ELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGA 337 (446)
Q Consensus 258 ~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 337 (446)
.+++|++++++... -..+.++=..+.|+++|.|..+.++.++ .+..+-.|..|++..+.-
T Consensus 327 ~L~~L~~LDLS~N~------------Ls~~~Gwh~KLGNIKtL~La~N~iE~LS--------GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNL------------LAECVGWHLKLGNIKTLKLAQNKIETLS--------GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hcccceEeecccch------------hHhhhhhHhhhcCEeeeehhhhhHhhhh--------hhHhhhhheeccccccch
Confidence 56677776665432 1233344456777777777777666543 122344566666665543
Q ss_pred ccHHHHHHHHhhCCCCceEEEeccc
Q 013295 338 CGWLSLAHIFSRMPKLESIVFEEGV 362 (446)
Q Consensus 338 ~~~~~l~~ll~~~p~L~~L~i~~~~ 362 (446)
...+.+ .-+.+.|-|+.|.+.+.+
T Consensus 387 e~ldeV-~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 387 EELDEV-NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhHHHh-cccccccHHHHHhhcCCC
Confidence 222222 234567777777776644
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.45 E-value=0.0013 Score=41.35 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=20.4
Q ss_pred cccEEEecceecccCCC-ccCCCCccEEEeeeEEec
Q 013295 142 TLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTID 176 (446)
Q Consensus 142 ~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~~ 176 (446)
+|++|++.++.+...++ ...|++|++|+++++.+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 56666666666665544 556666666666666554
No 49
>PLN03150 hypothetical protein; Provisional
Probab=96.29 E-value=0.0028 Score=65.23 Aligned_cols=105 Identities=12% Similarity=0.025 Sum_probs=65.9
Q ss_pred cccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe-ccCcceEE
Q 013295 142 TLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRLR 218 (446)
Q Consensus 142 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-~~~L~~L~ 218 (446)
.++.|+|.++.+... +....+++|+.|+|+++.+. +.+...+..+++|+.|+|.+|.+.+. .+-.+. .++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEE
Confidence 377888888877542 23457888999999888776 33444567888999999988876543 222232 47889999
Q ss_pred EeeccCcccccCceEEEEecccceeEEeeccC
Q 013295 219 LELEAPEEDYITKYKVIIRAPNLEQLYIRDHG 250 (446)
Q Consensus 219 i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 250 (446)
+.+|...+.. +..+.-...++..+.+.++.
T Consensus 497 Ls~N~l~g~i--P~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRV--PAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccC--ChHHhhccccCceEEecCCc
Confidence 8888654320 01111112345566666653
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.95 E-value=0.00098 Score=59.55 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=22.9
Q ss_pred hcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecc
Q 013295 292 RDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVG 336 (446)
Q Consensus 292 ~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 336 (446)
..+-++..|.+.++.++.+. . ...+-.+|-|+++.|..++
T Consensus 371 ~KLYSLvnLDl~~N~Ie~ld--e---V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSNQIEELD--E---VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhhheeccccccchhhHH--H---hcccccccHHHHHhhcCCC
Confidence 34556677777777666432 1 2334456667777666543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.94 E-value=0.0013 Score=65.70 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=37.7
Q ss_pred CCcceEEEEecccCCcccH---HHHHHHHHhCCceEEEEEec-CCccccCCCcccccCcccEEEecceeccc
Q 013295 88 GNINKFSLRCCGLVDSSRL---KLWVSFATMRNVREIEISLN-DDECIELPHCIYTCKTLEVLKLDMNFFIK 155 (446)
Q Consensus 88 ~~v~~l~l~~~~~~~~~~~---~~wi~~~~~~~l~~L~l~~~-~~~~~~lp~~l~~~~~L~~L~L~~~~~~~ 155 (446)
.+++.|+.-.....+...+ ...+++.. ..+.+.+-.. ..++++ |-.++...+|++|.|.+|.+..
T Consensus 55 ~~~~~f~a~~s~~ads~vl~qLq~i~d~lq--kt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 55 APVDYFRAYVSDNADSRVLEQLQRILDFLQ--KTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred CCCceeEEecCCcccchHHHHHHHHHHHHh--hheeeeecccCCCCCCC-CceeccccceeeEEecCcchhh
Confidence 6677776655443333322 23333332 4555555332 222333 8888889999999998876654
No 52
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.92 E-value=2.2e-05 Score=72.51 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=12.0
Q ss_pred HHhcCCCeeEEEEeCCccccc
Q 013295 290 MLRDIKNIKSLSLSSGTMFAL 310 (446)
Q Consensus 290 ~l~~l~~l~~L~L~~~~~~~~ 310 (446)
.++.++++..|++.++.++..
T Consensus 247 ~~~~L~~l~vLDLRdNklke~ 267 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKEV 267 (565)
T ss_pred HhcccccceeeeccccccccC
Confidence 344566666666666655533
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.65 E-value=0.0071 Score=62.49 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=76.6
Q ss_pred CCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccc
Q 013295 259 LHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGAC 338 (446)
Q Consensus 259 ~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 338 (446)
+|+|+.+.+....- ....+..+.+.+|||.+|++++..+..+. .+..++||+.|.+..-.-.
T Consensus 147 LPsL~sL~i~~~~~----------~~~dF~~lc~sFpNL~sLDIS~TnI~nl~--------GIS~LknLq~L~mrnLe~e 208 (699)
T KOG3665|consen 147 LPSLRSLVISGRQF----------DNDDFSQLCASFPNLRSLDISGTNISNLS--------GISRLKNLQVLSMRNLEFE 208 (699)
T ss_pred CcccceEEecCcee----------cchhHHHHhhccCccceeecCCCCccCcH--------HHhccccHHHHhccCCCCC
Confidence 56676666654321 12246777888889999988887766443 2345667777766543322
Q ss_pred cHHHHHHHHhhCCCCceEEEecccCCCCC-CCccccccc--ccceeEEEEEEeeCchhHHHHHHHHHhhccccCeEEEE
Q 013295 339 GWLSLAHIFSRMPKLESIVFEEGVDFEWP-EPSLALGCL--LSHVKIIVIGEFEGEENEMKLIKYLLKNGEVLNAMIIG 414 (446)
Q Consensus 339 ~~~~l~~ll~~~p~L~~L~i~~~~~~~~~-~~~~~~~~~--~~~L~~v~i~~~~g~~~~~~~~~~ll~~a~~L~~l~i~ 414 (446)
....+..++ ...+|+.|+|+........ ....-.+|. +++|+.+ ++.|..-..++++.+++.=++|+++...
T Consensus 209 ~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL---DcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 209 SYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL---DCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred chhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEE---ecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 333344443 5788888888774311101 011112332 3444444 4556655567777777777777776644
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.56 E-value=0.0041 Score=39.14 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=28.9
Q ss_pred CCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeC
Q 013295 163 PSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYG 201 (446)
Q Consensus 163 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~ 201 (446)
++|++|+|+++.+. .+...+.+||+|+.|.+.+|.+.
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999988 35555789999999999998644
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.50 E-value=0.038 Score=52.88 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=25.2
Q ss_pred CCceEEEEEecCCccccCCCcccccCcccEEEeccee-cccCCCccCCCCccEEEeeeE
Q 013295 116 RNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNF-FIKTPPTIFFPSAKILHVILN 173 (446)
Q Consensus 116 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~ 173 (446)
++++.|+++.+. ...+|. --++|++|.+.+|. +...|... .++|++|++++|
T Consensus 52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCD--IESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCC--CcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCc
Confidence 456666666542 334441 11346666666653 22222211 246666666655
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.47 E-value=0.0046 Score=55.99 Aligned_cols=38 Identities=34% Similarity=0.502 Sum_probs=35.4
Q ss_pred CCCcCCCCc----hHHHHHHhcCCChhhhhhccccchhHHHH
Q 013295 7 TEDRISCLP----NAILCHILSFLPTKYAVATCVLSSTWKLV 44 (446)
Q Consensus 7 ~~d~is~LP----delL~~Ils~L~~~~~~r~s~vsrrWr~l 44 (446)
+.|.++.|| |++..+||++|+..+++.+..|||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 468899999 99999999999999999999999999863
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.28 E-value=0.0041 Score=66.00 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=24.7
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCC-CccCCCCccEEEeeeE
Q 013295 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILN 173 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~l~~L~~L~L~~~ 173 (446)
.++.|||+.+.. ..++|..++.+-+|++|+|.+..+...| +...|+.|.+|++...
T Consensus 572 ~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 572 LLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred ceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence 344444443221 3445555544555555555544444332 2234444444444443
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.08 E-value=0.0068 Score=59.00 Aligned_cols=169 Identities=20% Similarity=0.220 Sum_probs=103.8
Q ss_pred ccCcccEEEecceecccCCCccCCC--CccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCcce
Q 013295 139 TCKTLEVLKLDMNFFIKTPPTIFFP--SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKR 216 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~~~~l~--~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~ 216 (446)
....+..|.+.++.+...+....+. +|+.|+++++.+.. +..-+..+|+|+.|.+.+|....+ .......+.|+.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhh-hhhhhhhhhhhh
Confidence 3467888888888877766655553 88999888887772 212356788999999988875544 232225678888
Q ss_pred EEEeeccCcccccCceEEEEeccc-ceeEEeeccCC-c-ceEEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhc
Q 013295 217 LRLELEAPEEDYITKYKVIIRAPN-LEQLYIRDHGP-G-LYVVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRD 293 (446)
Q Consensus 217 L~i~~~~~~~~~~~~~~~~~~~p~-L~~L~l~~~~~-~-~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (446)
|.++++..... ...+..++ |+++.+.+... . ...+.+...+..+.+..... ......+..
T Consensus 191 L~ls~N~i~~l-----~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~------------~~~~~~~~~ 253 (394)
T COG4886 191 LDLSGNKISDL-----PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL------------EDLPESIGN 253 (394)
T ss_pred eeccCCccccC-----chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee------------eeccchhcc
Confidence 88888865421 11222344 88888877632 1 11233344444433222111 011345667
Q ss_pred CCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEec
Q 013295 294 IKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGV 335 (446)
Q Consensus 294 l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 335 (446)
+++++.|.++.+.+..+. .+..+.+++.|+++..
T Consensus 254 l~~l~~L~~s~n~i~~i~--------~~~~~~~l~~L~~s~n 287 (394)
T COG4886 254 LSNLETLDLSNNQISSIS--------SLGSLTNLRELDLSGN 287 (394)
T ss_pred ccccceeccccccccccc--------cccccCccCEEeccCc
Confidence 888888888887766543 1456677888888754
No 59
>PLN03150 hypothetical protein; Provisional
Probab=94.85 E-value=0.016 Score=59.82 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=54.2
Q ss_pred CccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccce
Q 013295 164 SAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLE 242 (446)
Q Consensus 164 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~ 242 (446)
.++.|+|.++.+. +.+..-+..+++|+.|+|.+|.+.+. ..-.+ ..++|+.|+++.|...+. .....-..++|+
T Consensus 419 ~v~~L~L~~n~L~-g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~---iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLR-GFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS---IPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCcc-ccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCC---CchHHhcCCCCC
Confidence 3677888877765 33344467788888888888765443 22223 247888888888876532 112223567888
Q ss_pred eEEeeccCCc
Q 013295 243 QLYIRDHGPG 252 (446)
Q Consensus 243 ~L~l~~~~~~ 252 (446)
.|++.++...
T Consensus 494 ~L~Ls~N~l~ 503 (623)
T PLN03150 494 ILNLNGNSLS 503 (623)
T ss_pred EEECcCCccc
Confidence 8888876543
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.0011 Score=58.60 Aligned_cols=81 Identities=21% Similarity=0.107 Sum_probs=53.6
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013295 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
+++.|.++.++-....+- ..++.|++|.|+-|.+..+.++..|.+|++|.|..+.+.+-+=..-+.+.|+|+.|+|.
T Consensus 20 ~vkKLNcwg~~L~DIsic---~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISIC---EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHHHHH---HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 456666655542222211 13577888888888877767777888888888888877732223346788888888888
Q ss_pred eeEe
Q 013295 197 GYIY 200 (446)
Q Consensus 197 ~~~~ 200 (446)
.|.+
T Consensus 97 ENPC 100 (388)
T KOG2123|consen 97 ENPC 100 (388)
T ss_pred cCCc
Confidence 8653
No 61
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.52 E-value=0.012 Score=62.63 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=9.8
Q ss_pred cccceeEEEEEEeeCch
Q 013295 376 LLSHVKIIVIGEFEGEE 392 (446)
Q Consensus 376 ~~~~L~~v~i~~~~g~~ 392 (446)
+.+||+.+.+..+.-.+
T Consensus 768 f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccCcccEEEEecccccc
Confidence 34567777666554443
No 62
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.49 E-value=0.013 Score=52.78 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.4
Q ss_pred CcCCCCchHHHHHHhcC-----CChhhhhhccccchhHHH
Q 013295 9 DRISCLPNAILCHILSF-----LPTKYAVATCVLSSTWKL 43 (446)
Q Consensus 9 d~is~LPdelL~~Ils~-----L~~~~~~r~s~vsrrWr~ 43 (446)
+.|+.||||||..||.+ ++.++..++|+|||.|+.
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 45789999999999975 456999999999999984
No 63
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.34 E-value=0.025 Score=53.39 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=33.5
Q ss_pred CCCCchHHHHHHhcCCC-hhhhhhccccchhHHHHhcc
Q 013295 11 ISCLPNAILCHILSFLP-TKYAVATCVLSSTWKLVWTS 47 (446)
Q Consensus 11 is~LPdelL~~Ils~L~-~~~~~r~s~vsrrWr~lw~~ 47 (446)
.++||+|+|..|..+|+ .-|.+|.+.|||.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 78999999999999997 58999999999999986554
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.06 E-value=0.078 Score=45.04 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=58.0
Q ss_pred HhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecccCCCCCCCc
Q 013295 291 LRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEGVDFEWPEPS 370 (446)
Q Consensus 291 l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~ 370 (446)
+..++.|.+|.++.+.+..+. ....+.+++|+.|.|..+.-.....+ .=+..||.|+.|.+.+.+..+.....
T Consensus 60 lp~l~rL~tLll~nNrIt~I~------p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR 132 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRID------PDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYR 132 (233)
T ss_pred CCCccccceEEecCCcceeec------cchhhhccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhcccCce
Confidence 446778888888888776554 23335678899998887654333322 23568999999999887633333333
Q ss_pred ccccccccceeEEEEEEeeC
Q 013295 371 LALGCLLSHVKIIVIGEFEG 390 (446)
Q Consensus 371 ~~~~~~~~~L~~v~i~~~~g 390 (446)
.-.-|..++|+.+.+.+...
T Consensus 133 ~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 133 LYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eEEEEecCcceEeehhhhhH
Confidence 22335556666665554433
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.70 E-value=0.02 Score=55.78 Aligned_cols=168 Identities=21% Similarity=0.239 Sum_probs=105.3
Q ss_pred CceEEEEEecCCccccCCCcccccC-cccEEEecceecccCC-CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEE
Q 013295 117 NVREIEISLNDDECIELPHCIYTCK-TLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLS 194 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 194 (446)
.+..+++.... ..++|....... +|+.|++.++.+...+ +...+++|+.|+++.+.+. .+.......+.|+.|.
T Consensus 117 ~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh--hhhhhhhhhhhhhhee
Confidence 57777776554 467777766674 9999999999988764 6678999999999999887 3333333689999999
Q ss_pred EEeeEeCCCCceEEE-eccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcc--eEEeCCCCceEEEEEEee
Q 013295 195 IKGYIYGTDSVTLNI-PSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGL--YVVHELHSLTKAVVDYGI 271 (446)
Q Consensus 195 L~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~L~~~~l~~~~ 271 (446)
+.++....+ . ..+ ....|++|.+..+.... .....-...++..+.+.+..... ..+..+++++.+++....
T Consensus 193 ls~N~i~~l-~-~~~~~~~~L~~l~~~~N~~~~----~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 193 LSGNKISDL-P-PEIELLSALEELDLSNNSIIE----LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred ccCCccccC-c-hhhhhhhhhhhhhhcCCccee----cchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence 999865544 1 111 22448888888873210 11112233445555444433322 334556667666654432
Q ss_pred eeecCCCCchhhHHHHHHHHhcCCCeeEEEEeCCcc
Q 013295 272 ECILDYDSPEDVAQAVVDMLRDIKNIKSLSLSSGTM 307 (446)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~ 307 (446)
-. .+.. +..+.+++.|.++++..
T Consensus 267 i~------------~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 267 IS------------SISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cc------------cccc-ccccCccCEEeccCccc
Confidence 10 1111 56778888888877644
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.63 E-value=0.0092 Score=52.54 Aligned_cols=114 Identities=19% Similarity=0.070 Sum_probs=60.7
Q ss_pred chHHHHhccCCCcceEEEEeeEeCCCCceEEEe-ccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcce--
Q 013295 178 NFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLY-- 254 (446)
Q Consensus 178 ~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-- 254 (446)
+.+..+......|+.|++.++.... ....+ .|+||.|.+++|..... .+.......+|+|+++.++++....+
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred CCcccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccc
Confidence 3344444455566666666653221 11222 36778888877732110 12334555678888888888766431
Q ss_pred --EEeCCCCceEEEEEEeeeeecCCCCchhhHHHHHHHHhcCCCeeEEEEe
Q 013295 255 --VVHELHSLTKAVVDYGIECILDYDSPEDVAQAVVDMLRDIKNIKSLSLS 303 (446)
Q Consensus 255 --~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~L~ 303 (446)
++..+++|..+++..+... .....-.+.+..+++++.|.-.
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~--------~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVT--------NLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cchhhhhcchhhhhcccCCcc--------ccccHHHHHHHHhhhhcccccc
Confidence 2344555666666665431 1222334455566666666543
No 67
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=92.64 E-value=0.046 Score=51.15 Aligned_cols=83 Identities=18% Similarity=0.094 Sum_probs=57.9
Q ss_pred ccCcccEEEecceecccC--CCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEeCCCCceEEEe-ccCcc
Q 013295 139 TCKTLEVLKLDMNFFIKT--PPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIP-SLTLK 215 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~-~~~L~ 215 (446)
..++|++|+|+++.+... ..+.+...+++|.|..+.+. ..-..++.+...|+.|+|.+++...+ .+.... ..+|.
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~-~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTV-APGAFQTLFSLS 349 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEE-ecccccccceee
Confidence 468899999998877654 35567888888888888877 22245677888899999988765443 333332 36777
Q ss_pred eEEEeecc
Q 013295 216 RLRLELEA 223 (446)
Q Consensus 216 ~L~i~~~~ 223 (446)
+|++..|.
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 77776553
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=0.011 Score=52.49 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=10.7
Q ss_pred HHHHHhhCCCCceEEE
Q 013295 343 LAHIFSRMPKLESIVF 358 (446)
Q Consensus 343 l~~ll~~~p~L~~L~i 358 (446)
-..+|+..|+|++|+=
T Consensus 109 R~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 109 RRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHHHHHHcccchhccC
Confidence 3456777777777764
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.24 E-value=1.9 Score=38.72 Aligned_cols=129 Identities=18% Similarity=0.091 Sum_probs=64.7
Q ss_pred HHHHHhcCCCeeEEEEeCCccccccccccccCCCCCCCCccceEEEEecccc--cHH----HHHHH-----HhhCCCCce
Q 013295 287 VVDMLRDIKNIKSLSLSSGTMFALDRLDYANDHSFPTFPFLNRLEVEGVGAC--GWL----SLAHI-----FSRMPKLES 355 (446)
Q Consensus 287 ~~~~l~~l~~l~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~----~l~~l-----l~~~p~L~~ 355 (446)
+.+.+-.||+++...|+.+.+..-. ...-.+.+..-.+|+||.++.|+.. ... ++.++ ...-|.|+.
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~--~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEF--PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HHHHHhcCCcceeeeccccccCccc--chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 3444556677777777665443211 0000111123346777777665421 111 22222 224677887
Q ss_pred EEEecccCCCCCC-CcccccccccceeEEEEEEeeCchhH--HHHHHHHHhhccccCeEEEEcccc
Q 013295 356 IVFEEGVDFEWPE-PSLALGCLLSHVKIIVIGEFEGEENE--MKLIKYLLKNGEVLNAMIIGGEQF 418 (446)
Q Consensus 356 L~i~~~~~~~~~~-~~~~~~~~~~~L~~v~i~~~~g~~~~--~~~~~~ll~~a~~L~~l~i~~~~~ 418 (446)
...-...-++... .+..---.+..|+.|+|. ++|...+ -.++-.-+.++.+||.+.+.....
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~-qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQ-QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEee-ecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 7764422111110 010000123468999888 4455332 456666678889999998876544
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.72 E-value=0.24 Score=49.86 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=36.4
Q ss_pred CCCCcCCCCchHHHHHHhcCCChhhhhhccccchhHHHH
Q 013295 6 STEDRISCLPNAILCHILSFLPTKYAVATCVLSSTWKLV 44 (446)
Q Consensus 6 ~~~d~is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~l 44 (446)
...|.++.||-|+..+||++|+.++++.++.+|+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 467999999999999999999999999999999999854
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.88 E-value=0.094 Score=51.37 Aligned_cols=103 Identities=21% Similarity=0.186 Sum_probs=54.8
Q ss_pred ccccCcccEEEecceecccCCC-ccCCCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEeeEeCCCCceEEEeccCc
Q 013295 137 IYTCKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGYIYGTDSVTLNIPSLTL 214 (446)
Q Consensus 137 l~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L 214 (446)
+..+.+|..|++.++.+..... ...+++|++|+|+++.+. -.++ ..++.|+.|.+.+|....+ ..+. ..+.|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~-~~~~-~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDI-SGLE-SLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhc-cCCc-cchhh
Confidence 3345666777777666665444 556677777777776666 2332 2344477777766653332 1111 14566
Q ss_pred ceEEEeeccCcccccCceEE--EEecccceeEEeeccC
Q 013295 215 KRLRLELEAPEEDYITKYKV--IIRAPNLEQLYIRDHG 250 (446)
Q Consensus 215 ~~L~i~~~~~~~~~~~~~~~--~~~~p~L~~L~l~~~~ 250 (446)
+.+.+.++..... .- ....++|+.+.+.++.
T Consensus 165 ~~l~l~~n~i~~i-----e~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 165 KLLDLSYNRIVDI-----ENDELSELISLEELDLGGNS 197 (414)
T ss_pred hcccCCcchhhhh-----hhhhhhhccchHHHhccCCc
Confidence 6666666654321 11 1334555656565543
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.65 E-value=0.57 Score=39.97 Aligned_cols=71 Identities=23% Similarity=0.206 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCeeEEEEeCCc-cccccccccccCCCCCCCCccceEEEEecccccHHHHHHHHhhCCCCceEEEecc
Q 013295 285 QAVVDMLRDIKNIKSLSLSSGT-MFALDRLDYANDHSFPTFPFLNRLEVEGVGACGWLSLAHIFSRMPKLESIVFEEG 361 (446)
Q Consensus 285 ~~~~~~l~~l~~l~~L~L~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 361 (446)
+.-..-+..++.+++|.+.... ...+. -...-+.+++|+.|+|+.|..++..++..+ ..+++|+.|.|...
T Consensus 115 ~eGle~L~~l~~i~~l~l~~ck~~dD~~-----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 115 YEGLEHLRDLRSIKSLSLANCKYFDDWC-----LERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHHHHhccchhhhheeccccchhhHH-----HHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcCc
Confidence 3334455666666666665431 11110 001113566777777777777666666544 46677777777553
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.70 E-value=0.42 Score=25.30 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=11.1
Q ss_pred CCCccEEEeeeEEeccchHHH
Q 013295 162 FPSAKILHVILNTIDNNFSDW 182 (446)
Q Consensus 162 l~~L~~L~L~~~~~~~~~l~~ 182 (446)
+++|++|+|+++.+.+++...
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 356677777777666555443
No 74
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=84.32 E-value=0.061 Score=52.73 Aligned_cols=45 Identities=24% Similarity=0.264 Sum_probs=18.6
Q ss_pred cCCCcccccCcccEEEecceecccCC-CccCCCCccEEEeeeEEec
Q 013295 132 ELPHCIYTCKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTID 176 (446)
Q Consensus 132 ~lp~~l~~~~~L~~L~L~~~~~~~~~-~~~~l~~L~~L~L~~~~~~ 176 (446)
++|..+..|..|+.|.|..+.+...| ....+..|+.|+|+.+.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence 34443333444444444443333222 2223444444444444443
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.31 E-value=0.33 Score=47.54 Aligned_cols=101 Identities=16% Similarity=0.046 Sum_probs=61.0
Q ss_pred CceEEEEEecCCccccCCCcccccCcccEEEecceecccCCCccCCCCccEEEeeeEEec-cchHHHHhccCCCcceEEE
Q 013295 117 NVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTID-NNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 117 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L 195 (446)
+++.+++.-+. ..++...+..+++|++|+|+++.+....+...++.|+.|++.++.+. -+++ ..++.|+.|.+
T Consensus 96 ~l~~l~l~~n~--i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l 169 (414)
T KOG0531|consen 96 SLEALDLYDNK--IEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL----ESLKSLKLLDL 169 (414)
T ss_pred ceeeeeccccc--hhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC----ccchhhhcccC
Confidence 45555554332 12222224557788888888887777666777777888888888776 2322 23677777777
Q ss_pred EeeEeCCCCceE-EEeccCcceEEEeeccC
Q 013295 196 KGYIYGTDSVTL-NIPSLTLKRLRLELEAP 224 (446)
Q Consensus 196 ~~~~~~~~~~~~-~i~~~~L~~L~i~~~~~ 224 (446)
.++..... ... .....+|+.+.+..+..
T Consensus 170 ~~n~i~~i-e~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 170 SYNRIVDI-ENDELSELISLEELDLGGNSI 198 (414)
T ss_pred Ccchhhhh-hhhhhhhccchHHHhccCCch
Confidence 77764443 221 12346677777777654
No 76
>PF13013 F-box-like_2: F-box-like domain
Probab=84.22 E-value=0.63 Score=35.66 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=30.3
Q ss_pred cCCCCchHHHHHHhcCCChhhhhhccccch---hHHHH-hccC
Q 013295 10 RISCLPNAILCHILSFLPTKYAVATCVLSS---TWKLV-WTSL 48 (446)
Q Consensus 10 ~is~LPdelL~~Ils~L~~~~~~r~s~vsr---rWr~l-w~~~ 48 (446)
.+.+||+||++.|+.+-+..+.......|+ .|++. |..+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~~~~~L 63 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDHIWYLL 63 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999988877766 44443 5444
No 77
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=83.86 E-value=0.074 Score=53.79 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=13.5
Q ss_pred cccEEEecceecccCCCccCCCCccEEEeeeEEe
Q 013295 142 TLEVLKLDMNFFIKTPPTIFFPSAKILHVILNTI 175 (446)
Q Consensus 142 ~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~ 175 (446)
.|+.|+|+.|.+........|+.|++|+|+.+.+
T Consensus 188 ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred HhhhhccchhhhhhhHHHHhcccccccccccchh
Confidence 3444444444433323333344444444444433
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.31 E-value=0.63 Score=22.40 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=5.5
Q ss_pred cccEEEecceecc
Q 013295 142 TLEVLKLDMNFFI 154 (446)
Q Consensus 142 ~L~~L~L~~~~~~ 154 (446)
+|+.|+|++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 79
>PRK15386 type III secretion protein GogB; Provisional
Probab=82.84 E-value=2.7 Score=40.62 Aligned_cols=53 Identities=15% Similarity=0.030 Sum_probs=32.3
Q ss_pred ccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCCcceEEeC-CCCceEEEEEEe
Q 013295 211 SLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGPGLYVVHE-LHSLTKAVVDYG 270 (446)
Q Consensus 211 ~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~-~~~L~~~~l~~~ 270 (446)
+..+++|.+++|.... +..-.++|++|.+.++......... .++|+.+.+..+
T Consensus 51 ~~~l~~L~Is~c~L~s-------LP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIES-------LPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcc-------cCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 4779999999885442 2222346999999875442211111 246777777765
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.77 E-value=1.1 Score=24.23 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=18.5
Q ss_pred CCccceEEEEecccccHHHHHHHH
Q 013295 324 FPFLNRLEVEGVGACGWLSLAHIF 347 (446)
Q Consensus 324 ~~~L~~L~L~~~~~~~~~~l~~ll 347 (446)
+++|++|+|..|...++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467888888888887888777664
No 81
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=81.33 E-value=0.07 Score=52.36 Aligned_cols=137 Identities=17% Similarity=0.052 Sum_probs=77.2
Q ss_pred cHHHHHHHHHhCCceEEEEEecCCccccCCCcccccCcccEEEecceecccCCC-ccCCCCccEEEeeeEEeccchHHHH
Q 013295 105 RLKLWVSFATMRNVREIEISLNDDECIELPHCIYTCKTLEVLKLDMNFFIKTPP-TIFFPSAKILHVILNTIDNNFSDWL 183 (446)
Q Consensus 105 ~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~l 183 (446)
..++-+..+...|. |.|+....+.++.+..-+....-...+|+.+++..+|. +..|-.|+.|.|+.+.+- .+..-
T Consensus 41 sl~r~leeA~~sg~--l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--~ip~~ 116 (722)
T KOG0532|consen 41 SLERALEEAEYSGR--LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR--TIPEA 116 (722)
T ss_pred hhhHHHHHHhhhcc--cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce--ecchh
Confidence 44455555544343 33333332233444333445666778888888877653 446888888888877665 11112
Q ss_pred hccCCCcceEEEEeeEeCCCCceEEEeccCcceEEEeeccCcccccCceEEEEecccceeEEeeccCC
Q 013295 184 FSKCPALEDLSIKGYIYGTDSVTLNIPSLTLKRLRLELEAPEEDYITKYKVIIRAPNLEQLYIRDHGP 251 (446)
Q Consensus 184 l~~cp~Le~L~L~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 251 (446)
+.+...|..|+|..++...+ ...+-.--|+.|.+++|.... .+..+. ..+.|..|+.+.+..
T Consensus 117 i~~L~~lt~l~ls~NqlS~l--p~~lC~lpLkvli~sNNkl~~---lp~~ig-~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHL--PDGLCDLPLKVLIVSNNKLTS---LPEEIG-LLPTLAHLDVSKNEI 178 (722)
T ss_pred hhhhhHHHHhhhccchhhcC--ChhhhcCcceeEEEecCcccc---CCcccc-cchhHHHhhhhhhhh
Confidence 33445677777777654332 222223467888888776542 233344 556677777666544
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.27 E-value=0.45 Score=40.57 Aligned_cols=67 Identities=7% Similarity=0.021 Sum_probs=31.4
Q ss_pred HhhCCCCceEEEeccc-CCCCCCCcccccccccceeEEEEEEeeCch-hHHHHHHHHHhhccccCeEEEEccccc
Q 013295 347 FSRMPKLESIVFEEGV-DFEWPEPSLALGCLLSHVKIIVIGEFEGEE-NEMKLIKYLLKNGEVLNAMIIGGEQFQ 419 (446)
Q Consensus 347 l~~~p~L~~L~i~~~~-~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~-~~~~~~~~ll~~a~~L~~l~i~~~~~~ 419 (446)
|+.++.+++|.+..|. -++|.-- ... ....+|+.+.|.++.... ..++. +...++|+++.|+.-+++
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~-~l~-~~~~~L~~L~lsgC~rIT~~GL~~----L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLE-RLG-GLAPSLQDLDLSGCPRITDGGLAC----LLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHH-Hhc-ccccchheeeccCCCeechhHHHH----HHHhhhhHHHHhcCchhh
Confidence 4556666666665554 2233100 000 134566666666544331 12222 233466777777665553
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=77.90 E-value=1.3 Score=22.86 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=8.1
Q ss_pred cccEEEecceeccc
Q 013295 142 TLEVLKLDMNFFIK 155 (446)
Q Consensus 142 ~L~~L~L~~~~~~~ 155 (446)
+|++|+|++|.+..
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 35666666665543
No 84
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=71.31 E-value=0.82 Score=36.60 Aligned_cols=60 Identities=30% Similarity=0.355 Sum_probs=38.7
Q ss_pred ccCcccEEEecceecccCCC--ccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEEeeEe
Q 013295 139 TCKTLEVLKLDMNFFIKTPP--TIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIKGYIY 200 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~ 200 (446)
....|+..+|+++.+..+|. ...||.+++|+|.++.+.+-..+ +...|.|+.|++..+.+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence 34566777777777776543 22566777888877777632222 56677888888877653
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.35 E-value=3.5 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=14.6
Q ss_pred CCccEEEeeeEEeccchHHHH
Q 013295 163 PSAKILHVILNTIDNNFSDWL 183 (446)
Q Consensus 163 ~~L~~L~L~~~~~~~~~l~~l 183 (446)
++|++|+|+++.+.+++...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 567888888888875555444
No 86
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=55.32 E-value=8.1 Score=28.95 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcCCCCchHHHHHHhcCCChhhhh
Q 013295 9 DRISCLPNAILCHILSFLPTKYAV 32 (446)
Q Consensus 9 d~is~LPdelL~~Ils~L~~~~~~ 32 (446)
..++.||.|+-..|+++|+..|+.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHH
Confidence 678999999999999999998864
No 87
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=52.25 E-value=6.3 Score=35.13 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=39.1
Q ss_pred CCCcCCCCchHHHHHHhcCCC-hhhhhhccccchhH------HHHhccCCceeecccchh
Q 013295 7 TEDRISCLPNAILCHILSFLP-TKYAVATCVLSSTW------KLVWTSLPNLCFDDRLCL 59 (446)
Q Consensus 7 ~~d~is~LPdelL~~Ils~L~-~~~~~r~s~vsrrW------r~lw~~~~~l~~~~~~~~ 59 (446)
++--+.+||.|++..|+.+|+ -+|++.++.+-..- |.+|+.+-.+.|....+.
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~ 257 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIH 257 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345689999999999999998 69998888764333 456777655666655543
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=42.42 E-value=4 Score=32.80 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=49.7
Q ss_pred ceEEEEEecCCccccCCCcccc-cCcccEEEecceecccCC-CccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEE
Q 013295 118 VREIEISLNDDECIELPHCIYT-CKTLEVLKLDMNFFIKTP-PTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSI 195 (446)
Q Consensus 118 l~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 195 (446)
+..++|+.+. .-.+|..+.. .+.++.|+|.++.+.+.| .+..+|.|+.|+++.+.+. ...+++...-+|-.|..
T Consensus 55 l~~i~ls~N~--fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~--~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 55 LTKISLSDNG--FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN--AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred EEEEecccch--hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc--cchHHHHHHHhHHHhcC
Confidence 4445554443 4567776554 578999999999988765 4668999999999999887 22233332333444444
Q ss_pred Ee
Q 013295 196 KG 197 (446)
Q Consensus 196 ~~ 197 (446)
.+
T Consensus 131 ~~ 132 (177)
T KOG4579|consen 131 PE 132 (177)
T ss_pred CC
Confidence 44
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=42.22 E-value=19 Score=19.11 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=8.3
Q ss_pred CcccEEEecceeccc
Q 013295 141 KTLEVLKLDMNFFIK 155 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~ 155 (446)
.+|++|+|.+|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345666666655544
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=42.22 E-value=19 Score=19.11 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=8.3
Q ss_pred CcccEEEecceeccc
Q 013295 141 KTLEVLKLDMNFFIK 155 (446)
Q Consensus 141 ~~L~~L~L~~~~~~~ 155 (446)
.+|++|+|.+|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345666666655544
No 91
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=34.45 E-value=1.7e+02 Score=23.08 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=66.3
Q ss_pred HHHHHHHHHhc-CCCCcceEEEEecccCCcccHHHHHHHHHhCCceEEEEEecCCccccCCCccc---ccCcccEEEecc
Q 013295 75 FENFVHRVLLS-ASGNINKFSLRCCGLVDSSRLKLWVSFATMRNVREIEISLNDDECIELPHCIY---TCKTLEVLKLDM 150 (446)
Q Consensus 75 ~~~~v~~~l~~-~~~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~---~~~~L~~L~L~~ 150 (446)
|.+.+...+.+ +...|+++.+.. .+...+..++...-...+++|.+. .......+. .+. ..++++.+.+.+
T Consensus 3 ~~~~l~~~l~s~~~l~vk~l~i~~---~~~~~~~~iL~~l~p~~L~~i~i~-~~~~~~~~~-~i~~~eqWk~~k~~~i~~ 77 (142)
T PF01827_consen 3 FFEKLQEILKSKHKLKVKKLKINS---LNQSEVLSILPFLDPGVLEEIRIN-DEEEEEDFD-EIVELEQWKNAKEFKIGG 77 (142)
T ss_pred HHHHHHHHHcCCCCeeEEEEEEEc---CCHHHHHHHHhcCCCCcCEEEECc-Ccccccchh-heeehHHhceeheeEecc
Confidence 44556666666 226677777765 345567777877766679999992 111112222 222 267888888777
Q ss_pred eecccCCCccCCCCccEEEeeeEEeccchHHHHh---ccCCCcceEEE
Q 013295 151 NFFIKTPPTIFFPSAKILHVILNTIDNNFSDWLF---SKCPALEDLSI 195 (446)
Q Consensus 151 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll---~~cp~Le~L~L 195 (446)
..... .+...+.++...++.--.++.+++..+. ..-|..+...+
T Consensus 78 ~~~~~-~~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 78 FVIDS-FPLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred ccccc-HHHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 65532 2455677777777755556544444433 34444554444
No 92
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=32.45 E-value=15 Score=34.01 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=34.0
Q ss_pred CCCCchHHHHHHhcCCChhhhhhccccchhHHHHhccCC
Q 013295 11 ISCLPNAILCHILSFLPTKYAVATCVLSSTWKLVWTSLP 49 (446)
Q Consensus 11 is~LPdelL~~Ils~L~~~~~~r~s~vsrrWr~lw~~~~ 49 (446)
+..+|++++..|++++..++++++|.+|+|-..+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 567999999999999999999999999999986655444
No 93
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=29.16 E-value=56 Score=25.34 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=22.3
Q ss_pred ccCcccEEEecceeccc--CCCccCCCCccEEEeeeEEeccchHHHHhccCCCcceEEEE
Q 013295 139 TCKTLEVLKLDMNFFIK--TPPTIFFPSAKILHVILNTIDNNFSDWLFSKCPALEDLSIK 196 (446)
Q Consensus 139 ~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 196 (446)
.|.+|+.+.+... +.. ...+.++++|+.+++... +. .--...+.+|+.|+.+.+.
T Consensus 10 ~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECCC-eeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence 4667777776532 111 123445566666666543 22 0011235566666666663
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.65 E-value=13 Score=36.96 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=16.9
Q ss_pred CCCccEEEeeeEEec-cchHHHHhccCCCcceEEEEee
Q 013295 162 FPSAKILHVILNTID-NNFSDWLFSKCPALEDLSIKGY 198 (446)
Q Consensus 162 l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~L~~~ 198 (446)
+|.+..++|+.+++. -+.+..+.+..|+|..|+|.++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344444444444443 3344444444455555555444
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=23.99 E-value=40 Score=18.28 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=7.6
Q ss_pred CCccEEEeeeEEec
Q 013295 163 PSAKILHVILNTID 176 (446)
Q Consensus 163 ~~L~~L~L~~~~~~ 176 (446)
.+|+.|+|+.+.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555543
No 96
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=20.41 E-value=1e+02 Score=22.82 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=21.6
Q ss_pred CCCCCCCCcCCCCchHHHHHHhcCCChhhhhhc
Q 013295 2 MNGPSTEDRISCLPNAILCHILSFLPTKYAVAT 34 (446)
Q Consensus 2 ~~~~~~~d~is~LPdelL~~Ils~L~~~~~~r~ 34 (446)
|+......-++.||++-+..|++.++..+++..
T Consensus 37 l~~~~~~~il~~l~~~~~a~il~~m~~dd~~~l 69 (102)
T PF03448_consen 37 LDPDTQAEILEALSPEEAAEILAEMDSDDAADL 69 (102)
T ss_dssp S-CCCCCHCCCCS-HHHHHHHHCCS-HHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHccChHHHHHH
Confidence 344455667788888888888888887777655
No 97
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=20.01 E-value=80 Score=17.21 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=12.4
Q ss_pred HHHhhCCCCceEEEec
Q 013295 345 HIFSRMPKLESIVFEE 360 (446)
Q Consensus 345 ~ll~~~p~L~~L~i~~ 360 (446)
.++..+|+|+.|+...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 4678899999988654
Done!