BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013297
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form
pdb|2F9A|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
F-244
pdb|2FA0|A Chain A, Hmg-coa Synthase From Brassica Juncea In Complex With
Hmg-coa And Covalently Bound To Hmg-coa
Length = 450
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/396 (83%), Positives = 365/396 (92%)
Query: 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAV 61
AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS AV
Sbjct: 1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAV 60
Query: 62 TNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGT 121
T+LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGT
Sbjct: 61 TSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGT 120
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKL 181
AAL NCVNWVES+SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+ ML+GPDAP+ FESKL
Sbjct: 121 AALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKL 180
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
RGSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK LC+K+EKLEGK+FS+++A
Sbjct: 181 RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDA 240
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
DYFVFHSPYNKLVQKSFARLL+NDF+RNASS+DEAAKEK P+S+LS DESYQSRDLEKV
Sbjct: 241 DYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKV 300
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGL 361
SQQLAK YDAKVQP+TL+PKQVGNMYT +HNKHS+L GKRVV+FSYGSG
Sbjct: 301 SQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMFSYGSGS 360
Query: 362 TATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHE 397
TATMFSL+L E PFSLSNI SVM+V GKLK+RHE
Sbjct: 361 TATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHE 396
>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
Acetyl-Coa And Acetyl-Cys117
Length = 450
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/396 (83%), Positives = 364/396 (91%)
Query: 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAV 61
AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS AV
Sbjct: 1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAV 60
Query: 62 TNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGT 121
T+LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNA YGGT
Sbjct: 61 TSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNAXYGGT 120
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKL 181
AAL NCVNWVES+SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+ ML+GPDAP+ FESKL
Sbjct: 121 AALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKL 180
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
RGSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK LC+K+EKLEGK+FS+++A
Sbjct: 181 RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDA 240
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
DYFVFHSPYNKLVQKSFARLL+NDF+RNASS+DEAAKEK P+S+LS DESYQSRDLEKV
Sbjct: 241 DYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKV 300
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGL 361
SQQLAK YDAKVQP+TL+PKQVGNMYT +HNKHS+L GKRVV+FSYGSG
Sbjct: 301 SQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMFSYGSGS 360
Query: 362 TATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHE 397
TATMFSL+L E PFSLSNI SVM+V GKLK+RHE
Sbjct: 361 TATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHE 396
>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
pdb|2P8U|B Chain B, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
Length = 478
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/403 (51%), Positives = 272/403 (67%), Gaps = 8/403 (1%)
Query: 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTN 63
+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ +T V N
Sbjct: 24 DVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQN 83
Query: 64 LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123
L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNA YGGTAA
Sbjct: 84 LMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNAXYGGTAA 143
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRG 183
+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV +L+GP+AP+ FE LRG
Sbjct: 144 VFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRG 203
Query: 184 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFSL 238
+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY C K + EG K F+L
Sbjct: 204 THMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTL 263
Query: 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDL 298
++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y RD+
Sbjct: 264 NDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDV 323
Query: 299 EKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHN-KHSELDGKRVVLFSY 357
EK + + L+ K + S L+ Q GNMYT + +L GKR+ +FSY
Sbjct: 324 EKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSY 383
Query: 358 GSGLTATMFSLKLSEGHHPFSLSNIL--SVMNVAGKLKSRHEV 398
GSGL AT++SLK+++ P S + + S+ ++ +L SR V
Sbjct: 384 GSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGV 426
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|B Chain B, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|C Chain C, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|D Chain D, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
Length = 460
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/403 (49%), Positives = 268/403 (66%), Gaps = 8/403 (1%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
M K+VGILA+++YFP V Q LE ++ GKYT+GLGQ M FCS ED+ S+ LT
Sbjct: 2 MPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTV 61
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
V L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGG
Sbjct: 62 VQRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGG 121
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TA+LFN NW+ESSSWDGRY +VVC D AVY G ARPTGGA AV ML+GP AP+A E
Sbjct: 122 TASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERG 181
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQ 235
LRG+HM + YDFYKPNLASEYP+VDGKLS CYL ALD CY K + K G +
Sbjct: 182 LRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRP 241
Query: 236 FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQS 295
F+L + Y +FH+P+ K+VQKS ARL+FNDF+ +S + + L F L +++Y +
Sbjct: 242 FTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTN 301
Query: 296 RDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVL 354
+DL+K + ++ ++D K + S + GNMYT + H+ EL G R+
Sbjct: 302 KDLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGA 361
Query: 355 FSYGSGLTATMFSLKLSEGHHPFSLSNIL--SVMNVAGKLKSR 395
FSYGSGL A+ FS ++S+ P S + L S ++ +L SR
Sbjct: 362 FSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASR 404
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 160/374 (42%), Gaps = 55/374 (14%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + ACYG TA
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACYGATA 116
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 117 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 174
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + + +++K G F ++
Sbjct: 175 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQS----FAQVWDEHKKRTGLDF--ADY 227
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
D FH PY K+ +K+ + S EA +E++
Sbjct: 228 DALAFHIPYTKMGKKA--------LLAKISDQTEAEQERIL------------------- 260
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGL 361
A+ + S + ++VGN+YT + N + G ++ LFSYGSG
Sbjct: 261 ----------ARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 310
Query: 362 TATMFSLKLSEGHH 375
A F+ +L G+
Sbjct: 311 VAEFFTGELVAGYQ 324
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 160/374 (42%), Gaps = 55/374 (14%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + ACYG TA
Sbjct: 68 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACYGATA 121
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 122 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + + +++K G F ++
Sbjct: 180 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQS----FAQVWDEHKKRTGLDF--ADY 232
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
D FH PY K+ +K+ + S EA +E++
Sbjct: 233 DALAFHIPYTKMGKKA--------LLAKISDQTEAEQERIL------------------- 265
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGL 361
A+ + S + ++VGN+YT + N + G ++ LFSYGSG
Sbjct: 266 ----------ARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 315
Query: 362 TATMFSLKLSEGHH 375
A F+ +L G+
Sbjct: 316 VAEFFTGELVAGYQ 329
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 159/374 (42%), Gaps = 55/374 (14%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + CYG TA
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEGCYGATA 116
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 117 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 174
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + + +++K G F ++
Sbjct: 175 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQS----FAQVWDEHKKRTGLDF--ADY 227
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
D FH PY K+ +K+ + S EA +E++
Sbjct: 228 DALAFHIPYTKMGKKA--------LLAKISDQTEAEQERIL------------------- 260
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGL 361
A+ + S + ++VGN+YT + N + G ++ LFSYGSG
Sbjct: 261 ----------ARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 310
Query: 362 TATMFSLKLSEGHH 375
A F+ +L G+
Sbjct: 311 VAEFFTGELVAGYQ 324
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 158/374 (42%), Gaps = 55/374 (14%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 22 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 81
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + A YG TA
Sbjct: 82 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEAXYGATA 135
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 136 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 193
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + +++K G F ++
Sbjct: 194 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQ----SFAQVWDEHKKRTGLDF--ADY 246
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
D FH PY K+ +K+ + S EA +E++
Sbjct: 247 DALAFHIPYTKMGKKA--------LLAKISDQTEAEQERIL------------------- 279
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGL 361
A+ + S + ++VGN+YT + N + G ++ LFSYGSG
Sbjct: 280 ----------ARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 329
Query: 362 TATMFSLKLSEGHH 375
A F+ +L G+
Sbjct: 330 VAEFFTGELVAGYQ 343
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 158/374 (42%), Gaps = 55/374 (14%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + A YG TA
Sbjct: 68 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEAXYGATA 121
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 122 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + +++K G F ++
Sbjct: 180 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQ----SFAQVWDEHKKRTGLDF--ADY 232
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
D FH PY K+ +K+ + S EA +E++
Sbjct: 233 DALAFHIPYTKMGKKA--------LLAKISDQTEAEQERIL------------------- 265
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGL 361
A+ + S + ++VGN+YT + N + G ++ LFSYGSG
Sbjct: 266 ----------ARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 315
Query: 362 TATMFSLKLSEGHH 375
A F+ +L G+
Sbjct: 316 VAEFFTGELVAGYQ 329
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 160/375 (42%), Gaps = 56/375 (14%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNAC-YGGT 121
L K D + I + VG+E+ ID+SK+ L ++ + F + + AC YG T
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACXYGAT 116
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESK 180
A L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 117 AGLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKE 174
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
YDF++P YP+VDG LS Y+ + + + +++K G F ++
Sbjct: 175 DNVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQS----FAQVWDEHKKRTGLDF--AD 227
Query: 241 ADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEK 300
D FH PY K+ +K+ + S EA +E++
Sbjct: 228 YDALAFHIPYTKMGKKA--------LLAKISDQTEAEQERIL------------------ 261
Query: 301 VSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSG 360
A+ + S + ++VGN+YT + N + G ++ LFSYGSG
Sbjct: 262 -----------ARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSG 310
Query: 361 LTATMFSLKLSEGHH 375
A F+ +L G+
Sbjct: 311 AVAEFFTGELVAGYQ 325
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 171/408 (41%), Gaps = 59/408 (14%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG-VDSTNACYGGTAA 123
+ D K+IG + V +E+ + K +QI G + ACY T A
Sbjct: 63 ITDE--DKKKIGMVIVATES---AVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPA 117
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
+ +++ + LV+ TD+A Y PT GA AV M++ + + ++
Sbjct: 118 IQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDA 175
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL++
Sbjct: 176 VAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SLADFA 228
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302
FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 229 SLCFHVPFTKMGKKALESIIDN--------ADETTQERL--------------------- 259
Query: 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLT 362
+ Y+ V + + VGN+YT + N+ + G+ + LFSYGSG
Sbjct: 260 ----RSGYEDAVDYN----RYVGNIYTGSLYLSLISLLENRDLQA-GETIGLFSYGSGSV 310
Query: 363 ATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEVILHFLQMCFVRY 410
+S L EG+ + L L +R EV + + F R+
Sbjct: 311 GEFYSATLVEGY-----KDHLDQAAHKALLNNRTEVSVDAYETFFKRF 353
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 170/412 (41%), Gaps = 66/412 (16%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 65 LEKYKIDPKQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKFGNTDIEGVDSTNACYG 119
+ D K+IG + V +E+ + I L +Q F + CY
Sbjct: 62 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEM------KEAXCYA 113
Query: 120 GTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFE 178
T A+ +++ + LV+ TD+A Y PT GA AV M++ + +
Sbjct: 114 ATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 179 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDL 298
++ FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN--------ADETTQERL----------------- 259
Query: 299 EKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYG 358
+ Y+ V + + VGN+YT + N+ + G+ + LFSYG
Sbjct: 260 --------RSGYEDAVDYN----RYVGNIYTGSLYLSLISLLENRDLQA-GETIGLFSYG 306
Query: 359 SGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEVILHFLQMCFVRY 410
SG +S L EG+ + L L +R EV + + F R+
Sbjct: 307 SGSVGEFYSATLVEGY-----KDHLDQAAHKALLNNRTEVSVDAYETFFKRF 353
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 170/412 (41%), Gaps = 66/412 (16%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 65 LEKYKIDPKQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKFGNTDIEGVDSTNACYG 119
+ D K+IG + V +E+ + I L +Q F + CY
Sbjct: 62 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEM------KEAXCYA 113
Query: 120 GTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFE 178
T A+ +++ + LV+ TD+A Y PT GA AV M++ + +
Sbjct: 114 ATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 179 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDL 298
++ FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN--------ADETTQERL----------------- 259
Query: 299 EKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYG 358
+ Y+ V + + VGN+YT + N+ + G+ + LFSYG
Sbjct: 260 --------RSGYEDAVDYN----RYVGNIYTGSLYLSLISLLENRDLQA-GETIGLFSYG 306
Query: 359 SGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEVILHFLQMCFVRY 410
SG +S L EG+ + L L +R EV + + F R+
Sbjct: 307 SGSVGEFYSATLVEGY-----KDHLDQAAHKALLNNRTEVSVDAYETFFKRF 353
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 99/408 (24%), Positives = 170/408 (41%), Gaps = 59/408 (14%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG-VDSTNACYGGTAA 123
+ D K+IG + V +E+ + K +QI G + A Y T A
Sbjct: 63 ITDE--DKKKIGMVIVATESA---VDAAKAAAVQIHNLLGIQPFARCFEMKEAXYAATPA 117
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
+ +++ + LV+ TD+A Y PT GA AV M++ + + ++
Sbjct: 118 IQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDA 175
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL++
Sbjct: 176 VAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SLADFA 228
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302
FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 229 SLCFHVPFTKMGKKALESIIDN--------ADETTQERL--------------------- 259
Query: 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLT 362
+ Y+ V + + VGN+YT + N+ + G+ + LFSYGSG
Sbjct: 260 ----RSGYEDAVDYN----RYVGNIYTGSLYLSLISLLENRDLQA-GETIGLFSYGSGSV 310
Query: 363 ATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEVILHFLQMCFVRY 410
+S L EG+ + L L +R EV + + F R+
Sbjct: 311 GEFYSATLVEGY-----KDHLDQAAHKALLNNRTEVSVDAYETFFKRF 353
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A
Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 99/408 (24%), Positives = 170/408 (41%), Gaps = 59/408 (14%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG-VDSTNACYGGTAA 123
+ D K+IG + V +E+ + K +QI G + A Y T A
Sbjct: 63 ITDE--DKKKIGMVIVATES---AVDAAKAAAVQIHNLLGIQPFARCFEMKEAXYAATPA 117
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
+ +++ + LV+ TD+A Y PT GA AV M++ + + ++
Sbjct: 118 IQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDA 175
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL++
Sbjct: 176 VAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SLADFA 228
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVS 302
FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 229 SLCFHVPFTKMGKKALESIIDN--------ADETTQERL--------------------- 259
Query: 303 QQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLT 362
+ Y+ V + + VGN+YT + N+ + G+ + LFSYGSG
Sbjct: 260 ----RSGYEDAVDYN----RYVGNIYTGSLYLSLISLLENRDLQA-GETIGLFSYGSGSV 310
Query: 363 ATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSRHEVILHFLQMCFVRY 410
+S L EG+ + L L +R EV + + F R+
Sbjct: 311 VEFYSATLVEGY-----KDHLDQAAHKALLNNRTEVSVDAYETFFKRF 353
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
Mutans Ua159
Length = 425
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 158/372 (42%), Gaps = 64/372 (17%)
Query: 29 GASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK 88
G K++ GL ++ +DV++++ + +L D ++I + + +E+ +D+
Sbjct: 61 GEDPQKFSKGLLLNALSIAPITDDVVTLAAGSANEILTAE--DKEKIDMVILATESSVDQ 118
Query: 89 SKSIKTFLMQIF--EKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCT 146
SK+ ++ + + F + + ACY TAAL VE D R LV+ +
Sbjct: 119 SKAGAVYVHSLLGIQPFARS----FEMKEACYSATAALNYAKLHVEKHP-DTRV-LVLAS 172
Query: 147 DSAVYAEG-PARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVD 205
D A Y G P T GA ++ MLV D + + DF++PN + P V+
Sbjct: 173 DIAKYGIGTPGESTQGAGSIAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTT-PYVN 231
Query: 206 GKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADY--FVFHSPYNKLVQKSFARLLF 263
G S YL L T + ++Y+K +F +S D+ F FH P+ KL K F +++
Sbjct: 232 GMYSTKQYLDMLKTTW----AEYQK----RFDVSLTDFAAFCFHLPFPKLALKGFNKIM- 282
Query: 264 NDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQ 323
V +EKL KV+ + S L KQ
Sbjct: 283 ------DKQVPSDLQEKL------------------KVN-----------FEASILYSKQ 307
Query: 324 VGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNIL 383
+GN+YT + N + + G ++ LFSYGSG A +F+ L +G +N L
Sbjct: 308 IGNIYTGSLFLGLLSLLENSQNLVAGDKIALFSYGSGAVAEIFTGTLVKGFKEQLQTNRL 367
Query: 384 SVMNVAGKLKSR 395
KLK R
Sbjct: 368 D------KLKRR 373
>pdb|3SQZ|A Chain A, Crystal Structure Of Hmg_coa Synthase Complexed With Coa
Length = 389
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 159/372 (42%), Gaps = 63/372 (16%)
Query: 29 GASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK 88
G K++ GL ++ +DV++++ + +L D ++I + + +E+ +D+
Sbjct: 27 GEDPQKFSKGLLLNALSIAPITDDVVTLAAGSANEILTAE--DKEKIDMVILATESSVDQ 84
Query: 89 SKSIKTFLMQIF--EKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCT 146
SK+ ++ + + F + E ++ CY TAAL VE D R LV+ +
Sbjct: 85 SKAGAVYVHSLLGIQPFARS-FEMKEAX--CYSATAALNYAKLHVEKHP-DTRV-LVLAS 139
Query: 147 DSAVYAEG-PARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVD 205
D A Y G P T GA ++ MLV D + + DF++PN + P V+
Sbjct: 140 DIAKYGIGTPGESTQGAGSIAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTT-PYVN 198
Query: 206 GKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADY--FVFHSPYNKLVQKSFARLLF 263
G S YL L T + ++Y+K +F +S D+ F FH P+ KL K F +++
Sbjct: 199 GMYSTKQYLDMLKTTW----AEYQK----RFDVSLTDFAAFCFHLPFPKLALKGFNKIM- 249
Query: 264 NDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQ 323
V +EKL KV+ + S L KQ
Sbjct: 250 ------DKQVPSDLQEKL------------------KVN-----------FEASILYSKQ 274
Query: 324 VGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGHHPFSLSNIL 383
+GN+YT + N + + G ++ LFSYGSG A +F+ L +G +N L
Sbjct: 275 IGNIYTGSLFLGLLSLLENSQNLVAGDKIALFSYGSGAVAEIFTGTLVKGFKEQLQTNRL 334
Query: 384 SVMNVAGKLKSR 395
KLK R
Sbjct: 335 D------KLKRR 340
>pdb|3H7U|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
Akr4c9
Length = 335
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 182 RGSHMSHAYDFYKPNLASEYPVV 204
RGSHM++A F+K N +++P V
Sbjct: 17 RGSHMANAITFFKLNTGAKFPSV 39
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 344 HSELDGKRVVLFSY---GSGLTATMFSLKLSEGHHPFSLSNIL 383
S LDG V +F+Y GSG T TM L +G P +LS+I
Sbjct: 79 QSSLDGYNVCIFAYGQTGSGKTYTM--LNAGDGMIPMTLSHIF 119
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 344 HSELDGKRVVLFSY---GSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSR 395
S LDG V +F+Y GSG T TM L +G P ++S+I + +N KLK++
Sbjct: 78 QSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNWIN---KLKTK 127
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 344 HSELDGKRVVLFSY---GSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSR 395
S LDG V +F+Y GSG T TM L +G P ++S+I + +N KLK++
Sbjct: 134 QSSLDGYNVAIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNWIN---KLKTK 183
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 344 HSELDGKRVVLFSY---GSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSR 395
S LDG V +F+Y GSG T TM L +G P ++S+I + +N KLK++
Sbjct: 78 QSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNWIN---KLKTK 127
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 344 HSELDGKRVVLFSY---GSGLTATMFSLKLSEGHHPFSLSNILSVMNVAGKLKSR 395
S LDG V +F+Y GSG T TM L +G P ++S+I + +N KLK++
Sbjct: 78 QSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNWIN---KLKTK 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,754,202
Number of Sequences: 62578
Number of extensions: 502717
Number of successful extensions: 1102
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 44
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)