Query 013298
Match_columns 446
No_of_seqs 198 out of 1378
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 4E-124 1E-128 949.8 40.6 415 24-439 32-512 (524)
2 PLN02849 beta-glucosidase 100.0 3E-120 6E-125 948.6 41.7 429 8-438 9-485 (503)
3 PLN02998 beta-glucosidase 100.0 3E-120 6E-125 947.2 40.9 428 8-436 10-488 (497)
4 PLN02814 beta-glucosidase 100.0 3E-118 6E-123 933.5 41.2 414 24-440 23-487 (504)
5 PF00232 Glyco_hydro_1: Glycos 100.0 2E-115 5E-120 910.4 29.2 396 26-438 2-455 (455)
6 PRK13511 6-phospho-beta-galact 100.0 5E-114 1E-118 899.5 39.4 395 27-438 3-468 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 6E-114 1E-118 896.9 39.6 396 27-439 2-467 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 2E-113 3E-118 895.5 40.5 400 26-439 3-476 (478)
9 COG2723 BglB Beta-glucosidase/ 100.0 6E-114 1E-118 870.6 34.9 399 27-442 2-458 (460)
10 PRK09589 celA 6-phospho-beta-g 100.0 6E-113 1E-117 890.7 40.9 396 28-439 3-475 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 3E-112 5E-117 885.3 40.8 401 24-439 1-476 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 7E-112 1E-116 880.6 40.5 398 28-439 3-472 (474)
13 TIGR03356 BGL beta-galactosida 100.0 5E-108 1E-112 845.8 37.2 379 29-429 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.7 2.4E-15 5.3E-20 145.9 18.4 244 101-428 2-253 (254)
15 PF00150 Cellulase: Cellulase 99.6 7.3E-14 1.6E-18 136.3 15.4 108 80-190 22-133 (281)
16 PF02449 Glyco_hydro_42: Beta- 99.5 2.3E-12 5E-17 132.0 18.7 108 79-190 10-140 (374)
17 PRK10150 beta-D-glucuronidase; 99.3 1.6E-10 3.5E-15 125.6 21.2 259 79-435 313-594 (604)
18 PF07745 Glyco_hydro_53: Glyco 99.2 9E-09 2E-13 102.9 23.8 237 82-394 27-298 (332)
19 PF00331 Glyco_hydro_10: Glyco 99.1 1.7E-09 3.7E-14 108.4 15.9 294 29-431 6-318 (320)
20 PF01229 Glyco_hydro_39: Glyco 99.1 1E-08 2.2E-13 108.7 19.6 282 80-433 40-360 (486)
21 COG3693 XynA Beta-1,4-xylanase 99.0 6.2E-08 1.4E-12 94.4 21.7 264 98-435 65-343 (345)
22 COG3867 Arabinogalactan endo-1 98.8 1.8E-06 3.8E-11 83.2 21.3 274 25-393 31-343 (403)
23 PF02836 Glyco_hydro_2_C: Glyc 98.7 1.2E-06 2.7E-11 86.9 18.1 93 77-188 34-132 (298)
24 COG1874 LacA Beta-galactosidas 98.6 1.3E-07 2.9E-12 101.9 8.5 120 79-202 30-176 (673)
25 COG2730 BglC Endoglucanase [Ca 98.0 1.7E-05 3.6E-10 82.4 9.5 116 75-190 64-193 (407)
26 PF11790 Glyco_hydro_cc: Glyco 98.0 0.00012 2.7E-09 70.4 14.8 66 326-397 152-217 (239)
27 PF01301 Glyco_hydro_35: Glyco 97.8 0.00016 3.5E-09 72.6 10.3 109 79-188 24-150 (319)
28 PRK10340 ebgA cryptic beta-D-g 97.8 0.0009 2E-08 77.0 17.6 92 77-188 353-450 (1021)
29 PLN03059 beta-galactosidase; P 97.4 0.0023 4.9E-08 70.9 13.4 109 79-189 59-188 (840)
30 PRK09525 lacZ beta-D-galactosi 97.3 0.016 3.4E-07 67.0 19.4 90 77-188 369-463 (1027)
31 PF01373 Glyco_hydro_14: Glyco 97.2 0.00058 1.3E-08 69.5 6.0 105 78-188 15-150 (402)
32 PLN02803 beta-amylase 97.1 0.0022 4.7E-08 67.1 9.2 106 79-189 107-251 (548)
33 PLN02161 beta-amylase 97.0 0.0031 6.8E-08 65.6 9.1 110 75-189 113-261 (531)
34 PLN00197 beta-amylase; Provisi 97.0 0.0033 7.2E-08 65.9 9.0 106 79-189 127-271 (573)
35 PLN02801 beta-amylase 96.8 0.007 1.5E-07 63.1 10.0 98 78-178 36-172 (517)
36 PLN02905 beta-amylase 96.6 0.015 3.3E-07 61.8 10.4 100 76-178 283-421 (702)
37 PF13204 DUF4038: Protein of u 96.6 0.015 3.3E-07 57.6 10.0 103 81-188 32-156 (289)
38 PLN02705 beta-amylase 96.5 0.0077 1.7E-07 63.8 7.5 99 77-178 266-403 (681)
39 PF03198 Glyco_hydro_72: Gluca 96.4 0.053 1.1E-06 53.7 12.7 48 79-140 53-100 (314)
40 PF14587 Glyco_hydr_30_2: O-Gl 96.2 0.013 2.7E-07 59.7 7.4 100 89-189 57-184 (384)
41 PF14488 DUF4434: Domain of un 96.1 0.036 7.9E-07 50.3 9.1 103 79-190 20-132 (166)
42 COG3664 XynB Beta-xylosidase [ 95.5 0.5 1.1E-05 48.3 15.1 268 88-432 14-294 (428)
43 KOG0496 Beta-galactosidase [Ca 95.1 0.15 3.2E-06 54.9 10.6 110 79-189 49-176 (649)
44 COG5309 Exo-beta-1,3-glucanase 95.0 3.5 7.6E-05 40.1 18.3 55 70-140 54-108 (305)
45 PF12876 Cellulase-like: Sugar 94.1 0.1 2.2E-06 42.1 5.0 19 171-189 1-22 (88)
46 PF12891 Glyco_hydro_44: Glyco 93.8 0.2 4.2E-06 47.9 7.1 104 118-239 23-168 (239)
47 COG3250 LacZ Beta-galactosidas 93.7 0.34 7.3E-06 54.5 9.7 90 75-189 317-408 (808)
48 PF02055 Glyco_hydro_30: O-Gly 92.7 10 0.00022 40.6 18.7 99 330-434 319-421 (496)
49 PF00332 Glyco_hydro_17: Glyco 90.7 0.21 4.5E-06 50.1 3.2 80 328-412 213-301 (310)
50 PF07488 Glyco_hydro_67M: Glyc 89.7 3.8 8.2E-05 40.6 10.8 88 77-177 55-150 (328)
51 smart00642 Aamy Alpha-amylase 88.5 1.8 4E-05 39.1 7.4 63 77-139 17-90 (166)
52 COG3534 AbfA Alpha-L-arabinofu 86.4 17 0.00036 38.1 13.4 87 82-189 51-175 (501)
53 COG3934 Endo-beta-mannanase [C 84.3 0.61 1.3E-05 48.6 2.1 109 81-190 28-150 (587)
54 PF14871 GHL6: Hypothetical gl 83.5 13 0.00028 32.3 9.9 90 83-176 4-124 (132)
55 PLN02361 alpha-amylase 81.4 4.5 9.8E-05 42.0 7.2 64 76-139 26-96 (401)
56 PF02638 DUF187: Glycosyl hydr 80.3 8.3 0.00018 38.6 8.5 99 78-176 18-154 (311)
57 PF10566 Glyco_hydro_97: Glyco 78.1 7.3 0.00016 38.3 7.1 87 54-141 8-95 (273)
58 PF00128 Alpha-amylase: Alpha 77.0 5.3 0.00011 38.7 6.0 58 81-139 6-72 (316)
59 cd07945 DRE_TIM_CMS Leptospira 73.6 9.2 0.0002 37.7 6.6 83 80-173 75-158 (280)
60 PLN00196 alpha-amylase; Provis 73.1 8 0.00017 40.6 6.3 65 77-141 42-116 (428)
61 PRK05692 hydroxymethylglutaryl 70.9 16 0.00035 36.1 7.7 86 80-174 80-167 (287)
62 cd07939 DRE_TIM_NifV Streptomy 70.1 14 0.00031 35.7 7.0 78 82-173 72-150 (259)
63 KOG2233 Alpha-N-acetylglucosam 69.8 16 0.00034 38.5 7.3 111 78-188 77-248 (666)
64 COG1523 PulA Type II secretory 69.7 10 0.00022 42.1 6.4 55 85-139 206-285 (697)
65 PF05089 NAGLU: Alpha-N-acetyl 69.6 18 0.00039 36.5 7.5 110 78-189 18-185 (333)
66 PRK09441 cytoplasmic alpha-amy 69.2 14 0.00031 39.1 7.4 67 76-142 19-106 (479)
67 PRK05402 glycogen branching en 68.9 36 0.00077 38.3 10.7 97 78-182 264-401 (726)
68 TIGR02403 trehalose_treC alpha 66.4 14 0.00031 39.9 6.7 63 76-139 24-95 (543)
69 TIGR02402 trehalose_TreZ malto 66.3 44 0.00095 36.2 10.4 93 77-176 109-237 (542)
70 PRK12581 oxaloacetate decarbox 66.1 21 0.00045 37.9 7.6 98 28-145 48-158 (468)
71 cd06593 GH31_xylosidase_YicI Y 66.1 45 0.00097 33.1 9.8 106 80-188 25-160 (308)
72 cd03174 DRE_TIM_metallolyase D 66.0 19 0.00041 34.5 6.9 79 82-172 77-156 (265)
73 PRK03705 glycogen debranching 65.6 15 0.00033 40.7 6.8 54 85-139 185-262 (658)
74 PLN02746 hydroxymethylglutaryl 65.6 17 0.00036 37.1 6.6 84 81-173 123-208 (347)
75 PRK10933 trehalose-6-phosphate 64.6 16 0.00035 39.6 6.7 62 76-139 30-101 (551)
76 TIGR02090 LEU1_arch isopropylm 63.4 23 0.00049 36.3 7.2 61 81-141 73-134 (363)
77 PRK12313 glycogen branching en 62.4 66 0.0014 35.5 11.0 97 78-182 169-306 (633)
78 PRK14041 oxaloacetate decarbox 62.1 29 0.00063 36.9 7.8 56 77-145 88-148 (467)
79 COG0821 gcpE 1-hydroxy-2-methy 62.0 59 0.0013 32.8 9.3 82 76-171 81-162 (361)
80 cd07948 DRE_TIM_HCS Saccharomy 61.7 15 0.00032 35.9 5.2 59 82-140 74-133 (262)
81 TIGR03581 EF_0839 conserved hy 60.9 24 0.00052 33.4 6.1 75 78-164 134-230 (236)
82 PLN02784 alpha-amylase 60.7 26 0.00056 39.9 7.4 64 76-139 518-588 (894)
83 TIGR00433 bioB biotin syntheta 60.4 25 0.00055 34.4 6.8 55 82-139 123-178 (296)
84 cd06592 GH31_glucosidase_KIAA1 60.3 59 0.0013 32.3 9.4 107 80-189 31-167 (303)
85 TIGR02456 treS_nterm trehalose 59.8 20 0.00044 38.6 6.4 60 79-139 28-96 (539)
86 cd07944 DRE_TIM_HOA_like 4-hyd 59.7 38 0.00082 33.1 7.7 65 82-173 85-149 (266)
87 TIGR01515 branching_enzym alph 59.5 89 0.0019 34.4 11.4 93 78-176 155-288 (613)
88 PRK10785 maltodextrin glucosid 59.3 26 0.00056 38.4 7.2 53 81-139 181-246 (598)
89 PRK14040 oxaloacetate decarbox 59.2 33 0.0007 37.6 7.8 97 77-190 90-211 (593)
90 cd06543 GH18_PF-ChiA-like PF-C 58.8 62 0.0013 32.1 9.2 84 86-176 19-104 (294)
91 TIGR02660 nifV_homocitr homoci 58.4 30 0.00065 35.4 7.1 59 82-140 75-134 (365)
92 PRK14511 maltooligosyl trehalo 57.7 48 0.001 37.9 9.0 59 78-142 19-94 (879)
93 cd07938 DRE_TIM_HMGL 3-hydroxy 57.4 34 0.00074 33.5 7.0 83 82-173 76-160 (274)
94 cd06598 GH31_transferase_CtsZ 56.8 83 0.0018 31.4 9.8 107 82-191 27-168 (317)
95 TIGR02401 trehalose_TreY malto 56.6 44 0.00096 38.0 8.4 66 78-143 15-91 (825)
96 cd06591 GH31_xylosidase_XylS X 56.5 75 0.0016 31.8 9.5 107 82-191 27-163 (319)
97 PRK05799 coproporphyrinogen II 56.2 23 0.0005 36.2 5.8 92 82-190 99-194 (374)
98 PRK09505 malS alpha-amylase; R 56.0 35 0.00076 38.0 7.5 63 81-143 232-318 (683)
99 PRK12858 tagatose 1,6-diphosph 55.8 57 0.0012 33.1 8.4 52 85-139 112-163 (340)
100 cd06602 GH31_MGAM_SI_GAA This 55.3 65 0.0014 32.6 8.8 107 81-190 26-168 (339)
101 cd07941 DRE_TIM_LeuA3 Desulfob 54.9 1E+02 0.0022 30.1 9.9 60 83-142 82-142 (273)
102 PRK11858 aksA trans-homoaconit 54.7 40 0.00087 34.7 7.3 59 82-140 78-137 (378)
103 cd07937 DRE_TIM_PC_TC_5S Pyruv 54.3 82 0.0018 30.8 9.1 69 81-174 93-161 (275)
104 cd06603 GH31_GANC_GANAB_alpha 53.9 64 0.0014 32.6 8.5 109 81-191 26-166 (339)
105 TIGR03217 4OH_2_O_val_ald 4-hy 52.9 1.4E+02 0.0031 30.1 10.8 55 82-149 90-146 (333)
106 PRK00366 ispG 4-hydroxy-3-meth 52.6 1E+02 0.0023 31.4 9.5 73 88-171 97-169 (360)
107 TIGR00612 ispG_gcpE 1-hydroxy- 52.6 92 0.002 31.5 9.0 85 73-171 76-160 (346)
108 COG1501 Alpha-glucosidases, fa 52.5 54 0.0012 37.1 8.3 100 91-193 294-421 (772)
109 PLN02447 1,4-alpha-glucan-bran 52.2 32 0.00068 38.8 6.4 94 77-176 248-383 (758)
110 PRK14705 glycogen branching en 51.9 1.1E+02 0.0024 36.5 10.9 89 82-176 768-897 (1224)
111 PRK12331 oxaloacetate decarbox 51.7 58 0.0012 34.4 8.0 51 82-145 99-149 (448)
112 TIGR03234 OH-pyruv-isom hydrox 51.3 49 0.0011 31.5 7.0 66 77-145 82-150 (254)
113 PRK12399 tagatose 1,6-diphosph 50.5 79 0.0017 31.8 8.2 57 85-144 111-167 (324)
114 PRK04161 tagatose 1,6-diphosph 50.5 81 0.0018 31.8 8.3 58 84-144 112-169 (329)
115 cd06600 GH31_MGAM-like This fa 50.4 1E+02 0.0023 30.7 9.3 106 82-190 27-163 (317)
116 PF04914 DltD_C: DltD C-termin 49.8 54 0.0012 28.5 6.2 58 117-178 34-91 (130)
117 PRK14507 putative bifunctional 49.2 64 0.0014 39.6 8.6 60 78-143 757-833 (1693)
118 cd02742 GH20_hexosaminidase Be 47.9 50 0.0011 32.8 6.5 63 80-148 17-98 (303)
119 cd07943 DRE_TIM_HOA 4-hydroxy- 47.5 2.2E+02 0.0047 27.5 10.9 46 82-140 88-133 (263)
120 PRK14510 putative bifunctional 46.4 35 0.00075 40.7 5.9 64 76-139 182-267 (1221)
121 cd06601 GH31_lyase_GLase GLase 46.1 79 0.0017 32.0 7.7 79 113-193 58-139 (332)
122 TIGR01108 oadA oxaloacetate de 45.7 79 0.0017 34.6 8.1 93 81-190 93-205 (582)
123 TIGR02100 glgX_debranch glycog 45.0 59 0.0013 36.4 7.1 55 85-139 190-265 (688)
124 cd06599 GH31_glycosidase_Aec37 44.9 1.9E+02 0.0042 28.8 10.3 109 81-190 31-171 (317)
125 cd07940 DRE_TIM_IPMS 2-isoprop 44.7 67 0.0015 31.2 6.8 78 82-173 72-154 (268)
126 PRK08195 4-hyroxy-2-oxovalerat 44.4 2E+02 0.0043 29.1 10.3 47 82-141 91-137 (337)
127 PF03659 Glyco_hydro_71: Glyco 43.9 1.6E+02 0.0035 30.4 9.7 51 79-139 17-67 (386)
128 PLN02389 biotin synthase 43.2 75 0.0016 32.8 7.1 58 79-139 175-233 (379)
129 COG0366 AmyA Glycosidases [Car 42.5 47 0.001 34.9 5.8 59 83-141 33-101 (505)
130 COG5520 O-Glycosyl hydrolase [ 42.5 4E+02 0.0086 27.4 16.5 89 90-189 77-179 (433)
131 TIGR00539 hemN_rel putative ox 41.8 62 0.0014 32.9 6.3 60 82-146 100-163 (360)
132 COG5016 Pyruvate/oxaloacetate 41.0 1.1E+02 0.0023 31.9 7.5 72 77-173 91-167 (472)
133 PF09585 Lin0512_fam: Conserve 40.6 26 0.00057 29.6 2.7 32 343-381 2-33 (113)
134 cd06545 GH18_3CO4_chitinase Th 40.6 74 0.0016 30.5 6.3 73 99-176 27-99 (253)
135 PF03511 Fanconi_A: Fanconi an 40.3 20 0.00043 26.8 1.7 38 103-142 19-56 (64)
136 COG3589 Uncharacterized conser 40.2 64 0.0014 32.6 5.7 70 83-166 20-89 (360)
137 PRK12568 glycogen branching en 40.1 61 0.0013 36.4 6.2 94 78-176 268-401 (730)
138 cd06565 GH20_GcnA-like Glycosy 39.9 1.1E+02 0.0024 30.3 7.6 62 80-148 18-86 (301)
139 TIGR01210 conserved hypothetic 39.4 1.4E+02 0.003 29.8 8.3 109 82-203 117-229 (313)
140 cd06595 GH31_xylosidase_XylS-l 39.2 2.7E+02 0.0058 27.4 10.2 108 82-191 28-163 (292)
141 TIGR02058 lin0512_fam conserve 38.3 31 0.00068 29.3 2.8 31 343-380 2-32 (116)
142 PLN02960 alpha-amylase 37.8 69 0.0015 36.6 6.2 95 76-176 413-549 (897)
143 PRK07094 biotin synthase; Prov 37.6 1.1E+02 0.0023 30.5 7.1 57 80-139 127-185 (323)
144 cd06542 GH18_EndoS-like Endo-b 37.5 1.1E+02 0.0023 29.3 6.9 55 118-176 50-104 (255)
145 cd06568 GH20_SpHex_like A subg 37.4 1.1E+02 0.0024 30.8 7.2 64 79-148 18-101 (329)
146 PF01055 Glyco_hydro_31: Glyco 37.4 1.3E+02 0.0029 31.3 8.1 110 79-191 43-184 (441)
147 smart00729 Elp3 Elongator prot 36.9 1.9E+02 0.0042 25.6 8.3 57 80-139 98-157 (216)
148 PRK14706 glycogen branching en 36.8 2.8E+02 0.006 30.8 10.7 89 86-176 175-299 (639)
149 PF02065 Melibiase: Melibiase; 35.9 3.3E+02 0.0072 28.3 10.5 93 79-176 58-183 (394)
150 KOG1065 Maltase glucoamylase a 35.8 1.7E+02 0.0036 33.2 8.7 105 82-192 314-453 (805)
151 TIGR02104 pulA_typeI pullulana 35.3 1E+02 0.0022 33.9 7.0 59 84-142 169-254 (605)
152 PRK08599 coproporphyrinogen II 35.0 1.5E+02 0.0033 30.2 8.0 94 81-190 99-195 (377)
153 TIGR01232 lacD tagatose 1,6-di 34.9 1.6E+02 0.0034 29.7 7.5 60 84-146 111-170 (325)
154 cd07947 DRE_TIM_Re_CS Clostrid 33.9 71 0.0015 31.5 5.0 59 81-139 76-135 (279)
155 PRK09936 hypothetical protein; 33.5 3.5E+02 0.0075 26.9 9.5 63 80-150 39-101 (296)
156 PTZ00445 p36-lilke protein; Pr 33.3 87 0.0019 29.7 5.2 50 119-172 29-88 (219)
157 cd06604 GH31_glucosidase_II_Ma 33.2 3E+02 0.0066 27.6 9.7 105 82-191 27-163 (339)
158 cd06570 GH20_chitobiase-like_1 33.2 1.5E+02 0.0032 29.7 7.2 63 80-148 19-94 (311)
159 PTZ00445 p36-lilke protein; Pr 33.0 93 0.002 29.5 5.4 58 83-140 33-99 (219)
160 PRK09856 fructoselysine 3-epim 33.0 77 0.0017 30.5 5.1 62 76-138 87-148 (275)
161 cd06562 GH20_HexA_HexB-like Be 32.6 95 0.0021 31.5 5.9 64 79-148 18-96 (348)
162 PF00682 HMGL-like: HMGL-like 32.6 1.4E+02 0.003 28.1 6.7 75 86-174 74-149 (237)
163 PF10566 Glyco_hydro_97: Glyco 32.6 89 0.0019 30.7 5.4 66 81-157 108-173 (273)
164 PRK12677 xylose isomerase; Pro 32.5 4.2E+02 0.0092 27.3 10.7 89 81-176 33-127 (384)
165 PF04646 DUF604: Protein of un 32.5 28 0.0006 33.7 1.8 77 123-202 72-148 (255)
166 COG2100 Predicted Fe-S oxidore 32.4 1.4E+02 0.0031 30.2 6.7 78 78-171 200-283 (414)
167 PF13547 GTA_TIM: GTA TIM-barr 32.0 58 0.0012 32.1 3.9 35 341-375 207-264 (299)
168 PF07555 NAGidase: beta-N-acet 31.7 1.6E+02 0.0035 29.5 7.2 93 82-185 18-111 (306)
169 PF01261 AP_endonuc_2: Xylose 31.1 68 0.0015 28.9 4.2 63 77-139 69-132 (213)
170 TIGR03471 HpnJ hopanoid biosyn 30.8 1.8E+02 0.004 30.6 8.0 76 82-170 287-364 (472)
171 cd00311 TIM Triosephosphate is 30.7 1.4E+02 0.0029 28.9 6.3 47 86-139 78-124 (242)
172 PRK01060 endonuclease IV; Prov 30.4 2.1E+02 0.0046 27.5 7.8 50 81-135 14-63 (281)
173 PRK09282 pyruvate carboxylase 30.0 1.9E+02 0.0041 31.8 8.0 93 81-190 98-210 (592)
174 TIGR02351 thiH thiazole biosyn 29.8 3.2E+02 0.0069 27.9 9.2 95 79-189 159-260 (366)
175 TIGR00542 hxl6Piso_put hexulos 29.2 1.1E+02 0.0024 29.5 5.6 61 77-139 92-153 (279)
176 PRK13210 putative L-xylulose 5 29.2 3.4E+02 0.0073 26.0 9.0 54 80-137 17-70 (284)
177 cd06589 GH31 The enzymes of gl 29.1 2E+02 0.0043 27.8 7.3 91 81-191 26-120 (265)
178 TIGR02102 pullulan_Gpos pullul 29.0 1.4E+02 0.003 35.3 7.0 64 76-139 477-575 (1111)
179 TIGR00542 hxl6Piso_put hexulos 28.9 3.3E+02 0.0071 26.2 8.9 54 79-136 16-69 (279)
180 PF04551 GcpE: GcpE protein; 28.8 1.7E+02 0.0038 29.8 6.8 84 74-171 79-169 (359)
181 PF02057 Glyco_hydro_59: Glyco 28.7 94 0.002 34.4 5.2 63 123-188 116-183 (669)
182 cd02874 GH18_CFLE_spore_hydrol 28.6 1.1E+02 0.0025 30.1 5.6 84 85-176 16-103 (313)
183 PRK06256 biotin synthase; Vali 27.9 1E+02 0.0022 30.9 5.2 57 80-139 150-207 (336)
184 PRK09997 hydroxypyruvate isome 27.8 2.1E+02 0.0045 27.3 7.1 63 79-146 85-152 (258)
185 TIGR03849 arch_ComA phosphosul 27.3 1.8E+02 0.0039 28.0 6.4 50 79-139 71-120 (237)
186 cd00927 Cyt_c_Oxidase_VIc Cyto 27.3 33 0.0007 26.5 1.1 20 74-93 45-66 (70)
187 PRK14042 pyruvate carboxylase 26.9 2.3E+02 0.005 31.1 7.9 141 26-190 37-210 (596)
188 PRK08446 coproporphyrinogen II 26.7 2.8E+02 0.006 28.1 8.1 91 82-189 98-192 (350)
189 TIGR00423 radical SAM domain p 26.5 3.2E+02 0.0069 27.0 8.4 53 81-139 106-165 (309)
190 KOG0470 1,4-alpha-glucan branc 26.3 1E+02 0.0022 34.4 5.0 64 78-141 253-333 (757)
191 TIGR02635 RhaI_grampos L-rhamn 26.1 3.3E+02 0.0071 28.1 8.5 89 71-177 33-130 (378)
192 PF04028 DUF374: Domain of unk 25.6 2.5E+02 0.0055 21.8 5.8 40 86-139 27-66 (74)
193 PRK09389 (R)-citramalate synth 25.4 1.2E+02 0.0025 32.5 5.2 61 81-141 75-136 (488)
194 TIGR02629 L_rham_iso_rhiz L-rh 25.3 2.4E+02 0.0052 29.4 7.2 82 82-177 73-164 (412)
195 cd07938 DRE_TIM_HMGL 3-hydroxy 25.3 6.4E+02 0.014 24.5 10.5 80 79-177 114-193 (274)
196 PRK05660 HemN family oxidoredu 25.3 3.2E+02 0.0069 28.0 8.3 93 82-190 107-202 (378)
197 cd02871 GH18_chitinase_D-like 25.0 2.1E+02 0.0045 28.5 6.7 50 120-176 61-110 (312)
198 cd00019 AP2Ec AP endonuclease 25.0 3.9E+02 0.0084 25.7 8.6 55 79-138 10-65 (279)
199 TIGR00419 tim triosephosphate 24.8 1.9E+02 0.0041 27.2 5.9 43 86-139 75-117 (205)
200 PRK09058 coproporphyrinogen II 24.7 2.2E+02 0.0047 30.0 7.1 94 82-191 163-259 (449)
201 COG0376 KatG Catalase (peroxid 24.6 61 0.0013 34.7 2.8 43 404-446 220-262 (730)
202 PRK13398 3-deoxy-7-phosphohept 24.6 2.9E+02 0.0063 27.0 7.5 72 74-148 36-107 (266)
203 PRK09856 fructoselysine 3-epim 24.5 4.9E+02 0.011 24.8 9.1 52 80-137 14-65 (275)
204 PRK05692 hydroxymethylglutaryl 24.3 6.9E+02 0.015 24.6 10.4 82 77-177 118-199 (287)
205 PLN02808 alpha-galactosidase 24.1 2.5E+02 0.0053 29.2 7.1 60 76-144 130-189 (386)
206 PRK07379 coproporphyrinogen II 23.7 3.7E+02 0.008 27.8 8.5 102 82-199 115-219 (400)
207 PRK10426 alpha-glucosidase; Pr 23.6 7E+02 0.015 27.7 11.0 106 81-188 223-364 (635)
208 PRK13209 L-xylulose 5-phosphat 23.4 5.2E+02 0.011 24.8 9.1 54 80-137 22-75 (283)
209 PRK10658 putative alpha-glucos 23.1 5.7E+02 0.012 28.6 10.2 102 85-189 289-420 (665)
210 PRK08508 biotin synthase; Prov 23.0 1.8E+02 0.0039 28.4 5.8 56 81-139 101-157 (279)
211 PF07071 DUF1341: Protein of u 22.8 2.3E+02 0.005 26.6 5.9 47 78-135 134-180 (218)
212 TIGR01211 ELP3 histone acetylt 22.2 3.5E+02 0.0076 29.3 8.1 107 82-204 206-317 (522)
213 cd06564 GH20_DspB_LnbB-like Gl 22.2 2.5E+02 0.0055 28.0 6.8 63 80-148 18-108 (326)
214 PF05404 TRAP-delta: Transloco 21.9 82 0.0018 28.6 2.8 67 96-166 78-151 (167)
215 cd06525 GH25_Lyc-like Lyc mura 21.9 5.9E+02 0.013 22.9 9.1 83 78-182 37-123 (184)
216 PHA02152 hypothetical protein 21.8 63 0.0014 25.5 1.7 36 44-91 42-78 (96)
217 TIGR00538 hemN oxygen-independ 21.7 1.5E+02 0.0033 31.1 5.3 60 82-145 151-213 (455)
218 PRK09240 thiH thiamine biosynt 21.6 6.6E+02 0.014 25.6 9.8 94 80-189 161-261 (371)
219 TIGR00587 nfo apurinic endonuc 21.4 4.5E+02 0.0098 25.4 8.2 56 82-142 14-69 (274)
220 TIGR03551 F420_cofH 7,8-dideme 21.2 2.8E+02 0.006 27.9 6.9 90 81-186 140-234 (343)
221 PF02679 ComA: (2R)-phospho-3- 21.1 1.7E+02 0.0036 28.3 4.9 80 78-177 83-162 (244)
222 PRK08208 coproporphyrinogen II 21.0 3.6E+02 0.0079 28.1 7.9 60 82-146 141-204 (430)
223 TIGR02631 xylA_Arthro xylose i 20.9 8.1E+02 0.017 25.2 10.2 94 77-177 30-129 (382)
224 PF09713 A_thal_3526: Plant pr 20.8 74 0.0016 23.2 1.8 36 122-168 16-52 (54)
225 PLN02925 4-hydroxy-3-methylbut 20.8 3.1E+02 0.0067 30.7 7.3 51 121-172 212-262 (733)
226 TIGR01589 A_thal_3526 uncharac 20.7 1.1E+02 0.0024 22.6 2.7 36 122-168 19-55 (57)
227 TIGR01212 radical SAM protein, 20.6 4E+02 0.0087 26.3 7.8 72 118-202 162-233 (302)
228 PRK13210 putative L-xylulose 5 20.6 1.9E+02 0.0041 27.8 5.3 61 77-139 92-153 (284)
229 PRK12330 oxaloacetate decarbox 20.4 4E+02 0.0086 28.6 8.0 94 81-190 99-213 (499)
230 PRK15492 triosephosphate isome 20.4 2.7E+02 0.0058 27.1 6.3 47 86-139 88-134 (260)
231 TIGR01856 hisJ_fam histidinol 20.4 2.6E+02 0.0057 26.8 6.2 60 120-181 16-78 (253)
232 PF13812 PPR_3: Pentatricopept 20.3 82 0.0018 19.2 1.9 15 121-135 20-34 (34)
233 cd06563 GH20_chitobiase-like T 20.1 2.8E+02 0.006 28.2 6.6 63 80-148 19-112 (357)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-124 Score=949.84 Aligned_cols=415 Identities=56% Similarity=1.024 Sum_probs=376.5
Q ss_pred CCCCCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc--CCCCC--CCcccchhhhchHHHHHHHHHcCCCEEEec
Q 013298 24 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA--GNVPG--TGDVACDEYHKYKEDVKLMADTGLDAYRFS 99 (446)
Q Consensus 24 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~--~~~~~--~~~~a~d~y~~~~~Di~l~~~lG~~~~R~s 99 (446)
..+..||++|+||+||||||+|||+++|||++|+||.|+|. +++.+ ++++|||+||||+|||+|||+||+++||||
T Consensus 32 ~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFS 111 (524)
T KOG0626|consen 32 FSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFS 111 (524)
T ss_pred ccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEE
Confidence 45889999999999999999999999999999999999987 35444 789999999999999999999999999999
Q ss_pred ccccccccCCC--CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcC
Q 013298 100 ISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGD 177 (446)
Q Consensus 100 i~W~ri~P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~ 177 (446)
|+||||+|.|+ +.+|++||++|+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++|||
T Consensus 112 IsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGD 191 (524)
T KOG0626|consen 112 ISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGD 191 (524)
T ss_pred eehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999997 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH------------------
Q 013298 178 RVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL------------------ 239 (446)
Q Consensus 178 ~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~------------------ 239 (446)
+||+|+|+|||++++..||..|..|||+++....+|..+++++++|+|.||||+|||+|++.
T Consensus 192 rVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~ 271 (524)
T KOG0626|consen 192 RVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALS 271 (524)
T ss_pred cceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEe
Confidence 99999999999999999999999999999875569999999999999999999999999998
Q ss_pred ---------------------------hhcccccCCChHHHHHHhccCCCCCCHHHHHHhcCCCCeeeeecCCceeeecC
Q 013298 240 ---------------------------VANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDN 292 (446)
Q Consensus 240 ---------------------------~~dpi~~G~yP~~~~~~~~~~lp~ft~~d~~~lkg~~DFiGiNyY~~~~v~~~ 292 (446)
+++|+..|+||+.|++.+++|||.||++|.+.+||+.||+|||||++.++++.
T Consensus 272 ~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~ 351 (524)
T KOG0626|consen 272 ARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHL 351 (524)
T ss_pred eeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhcc
Confidence 67888899999999999999999999999999999999999999999999876
Q ss_pred CCCCccCCCCCccCcccccccc--cCCC------CCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC------CCCC
Q 013298 293 PSSLKQEHRDWSADTATMAFFE--QDTA------ASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR------HSSL 358 (446)
Q Consensus 293 ~~~~~~~~~~~~~d~~~~~~~~--~~~g------~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~------~~~~ 358 (446)
..+..+....+..|..+..... ...+ +-.++|+||+++|++++++|+||||||||||+++.+ ....
T Consensus 352 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l 431 (524)
T KOG0626|consen 352 KPPPDPSQPGWSTDSGVDWTLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVAL 431 (524)
T ss_pred CCCCCCCCcccccccceeeeecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhh
Confidence 5422222233434444332000 0001 114899999999999999999999999999999874 3456
Q ss_pred CchhHHHHHHHHHHHHHHHHH-cCCceEEEEeecccccccccCCCcCccceEEEcCCCCCCccccchhHHHHHHHHhcCC
Q 013298 359 EDISRVKYLHAYIGSVLDAVR-NGSNTRGYFVWSFLDVFELLDGYASSYGLYYVDRDDPDLKRYPKLSALWYSQFLKGRS 437 (446)
Q Consensus 359 ~D~~Ri~yl~~~l~~v~~Ai~-dGv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii~~~~ 437 (446)
+|..|++|++.||.+|++||. +||||+|||+|||||||||..||+.||||++|||+|+ ++|+||.|++||+++++.+.
T Consensus 432 ~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~-l~R~pK~Sa~wy~~fl~~~~ 510 (524)
T KOG0626|consen 432 KDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDP-LKRYPKLSAKWYKKFLKGKV 510 (524)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCC-CcCCchhHHHHHHHHHcCCC
Confidence 899999999999999999997 9999999999999999999999999999999999996 99999999999999999887
Q ss_pred CC
Q 013298 438 VR 439 (446)
Q Consensus 438 ~~ 439 (446)
..
T Consensus 511 ~~ 512 (524)
T KOG0626|consen 511 KP 512 (524)
T ss_pred CC
Confidence 53
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=2.7e-120 Score=948.60 Aligned_cols=429 Identities=60% Similarity=1.055 Sum_probs=374.1
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhccCCCCCCCcccchhhhchHHHHHH
Q 013298 8 LIFLLNLAASALTAVEYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKL 87 (446)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~d~y~~~~~Di~l 87 (446)
+++||+-+++-+|...+++.+||++|+||+|||||||||++++||||+|+||.|.+... ..++++||||||||+|||+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~-~~~~~~a~D~YhrY~eDI~L 87 (503)
T PLN02849 9 TIFLLLALSSGKCSSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN-MSNGDIACDGYHKYKEDVKL 87 (503)
T ss_pred HHHHHHhcccccccCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC-CCCCCccccHHHhHHHHHHH
Confidence 66666667778899999999999999999999999999999999999999999987521 13788999999999999999
Q ss_pred HHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHH
Q 013298 88 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAY 167 (446)
Q Consensus 88 ~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y 167 (446)
||+||+++|||||+|+||+|+|.|.+|++||+||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++|
T Consensus 88 m~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~Y 167 (503)
T PLN02849 88 MVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAY 167 (503)
T ss_pred HHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHhcCcceEEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--------
Q 013298 168 ADVCFREFGDRVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL-------- 239 (446)
Q Consensus 168 a~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~-------- 239 (446)
|+.|+++|||+|++|+|+|||++++..||..|.+|||.+.....+|..+++.++.++++||+++||++|+++
T Consensus 168 A~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~ 247 (503)
T PLN02849 168 ADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDM 247 (503)
T ss_pred HHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999964311012333334457899999999999999987
Q ss_pred -------------------------------------hhcccccCCChHHHHHHhccCCCCCCHHHHHHhcCCCCeeeee
Q 013298 240 -------------------------------------VANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVI 282 (446)
Q Consensus 240 -------------------------------------~~dpi~~G~yP~~~~~~~~~~lp~ft~~d~~~lkg~~DFiGiN 282 (446)
|+||++.|+||+.|++.++.++|.|+++|++.|++++||||||
T Consensus 248 ~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiN 327 (503)
T PLN02849 248 QGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVI 327 (503)
T ss_pred CCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEe
Confidence 6789999999999999998889999999999999999999999
Q ss_pred cCCceeeecCCCCCc-cCCCCCccCcccccccccCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC--CCCCC
Q 013298 283 NYCMIYIKDNPSSLK-QEHRDWSADTATMAFFEQDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR--HSSLE 359 (446)
Q Consensus 283 yY~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~--~~~~~ 359 (446)
||++.+|+....... .....+...........+..|| +|+|+||+.+|++++++|++|||||||||++..+ ++.++
T Consensus 328 yYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~ 406 (503)
T PLN02849 328 HYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQK 406 (503)
T ss_pred ccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCccc
Confidence 999998875321000 0000111111100000112344 7999999999999999999989999999999765 55789
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCceEEEEeecccccccccCCCcCccceEEEcCCCCCCccccchhHHHHHHHHhcCCC
Q 013298 360 DISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFLDVFELLDGYASSYGLYYVDRDDPDLKRYPKLSALWYSQFLKGRSV 438 (446)
Q Consensus 360 D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii~~~~~ 438 (446)
|+.||+||++||++|++||+|||||+||++|||||||||.+||++||||++||++|++++|+||+|++||+++|++|+.
T Consensus 407 D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~~~ 485 (503)
T PLN02849 407 DTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGNST 485 (503)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999855799999999999999999873
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=2.9e-120 Score=947.21 Aligned_cols=428 Identities=67% Similarity=1.175 Sum_probs=369.0
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhccCCCC-CCCcccchhhhchHHHHH
Q 013298 8 LIFLLNLAASALTAVEYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVP-GTGDVACDEYHKYKEDVK 86 (446)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~-~~~~~a~d~y~~~~~Di~ 86 (446)
|+-++++++.+..+..+++.+||++|+||+|||||||||++++||||+|+||.|.+.+... .++++||||||||+|||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~EDi~ 89 (497)
T PLN02998 10 FLPLLALALTAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKEDVK 89 (497)
T ss_pred HHHHHHhcccccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHHHHH
Confidence 4444454444555566788899999999999999999999999999999999998854222 277899999999999999
Q ss_pred HHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHH
Q 013298 87 LMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTA 166 (446)
Q Consensus 87 l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ 166 (446)
|||+||+++|||||+|+||+|+|.|.+|++||+||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++
T Consensus 90 lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~ 169 (497)
T PLN02998 90 LMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTA 169 (497)
T ss_pred HHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHH
Confidence 99999999999999999999998788999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHhcCcceEEEecCCCceeeeccccccCCCCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHHHHHHHH------
Q 013298 167 YADVCFREFGDRVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLN-NCSRGNSSTEPYMAVHHLLLAHASVARL------ 239 (446)
Q Consensus 167 ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~-~~~~~~~~~~~~~~~~nll~Ah~~a~~~------ 239 (446)
||+.|+++|||+|++|+|+|||++++..||..|.+|||.+....+ +|..+++.++.++++||+++||++|+++
T Consensus 170 YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~ 249 (497)
T PLN02998 170 YADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYK 249 (497)
T ss_pred HHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999996431111 2333444567899999999999999986
Q ss_pred ---------------------------------------hhcccccCCChHHHHHHhccCCCCCCHHHHHHhcCCCCeee
Q 013298 240 ---------------------------------------VANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIG 280 (446)
Q Consensus 240 ---------------------------------------~~dpi~~G~yP~~~~~~~~~~lp~ft~~d~~~lkg~~DFiG 280 (446)
|+||++.|+||+.|++.+++++|.|+++|++.|++++||+|
T Consensus 250 ~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlG 329 (497)
T PLN02998 250 YKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVG 329 (497)
T ss_pred cCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEE
Confidence 66899999999999999988999999999999999999999
Q ss_pred eecCCceeeecCCCCCccCCCCCccCcccccc----cccCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCCCC
Q 013298 281 VINYCMIYIKDNPSSLKQEHRDWSADTATMAF----FEQDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPRHS 356 (446)
Q Consensus 281 iNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~----~~~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~ 356 (446)
||||++.+|+....+..+....+..+...... .....++ +|+|+||+.+|+++++||++|||||||||+++.+++
T Consensus 330 iNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g 408 (497)
T PLN02998 330 VINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSS 408 (497)
T ss_pred EchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCC
Confidence 99999999875331101100111111110000 0001233 799999999999999999998899999999976556
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCceEEEEeecccccccccCCCcCccceEEEcCCCCCCccccchhHHHHHHHHhcC
Q 013298 357 SLEDISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFLDVFELLDGYASSYGLYYVDRDDPDLKRYPKLSALWYSQFLKGR 436 (446)
Q Consensus 357 ~~~D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii~~~ 436 (446)
.++|+.|++||++||.+|++||+|||||+|||+|||+|||||.+||++||||++||++|++++|+||+|++||+++|+++
T Consensus 409 ~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~~ 488 (497)
T PLN02998 409 SLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKGT 488 (497)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhcc
Confidence 79999999999999999999999999999999999999999999999999999999997558999999999999999876
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=2.9e-118 Score=933.52 Aligned_cols=414 Identities=57% Similarity=1.023 Sum_probs=359.9
Q ss_pred CCCCCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhccCCCCCCCcccchhhhchHHHHHHHHHcCCCEEEeccccc
Q 013298 24 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFSISWS 103 (446)
Q Consensus 24 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ 103 (446)
+++.+||++|+||+|||||||||++++||||+|+||.|.+... ..++++||||||||+|||+|||+||+++|||||+||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~~-~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWs 101 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCYN-GGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWS 101 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeeccC-CCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHh
Confidence 6677899999999999999999999999999999999987411 137889999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCcceEEE
Q 013298 104 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWT 183 (446)
Q Consensus 104 ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~ 183 (446)
||+|+|.|.+|++||+||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++||+.|+++|||+|++|+
T Consensus 102 RI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~Wi 181 (504)
T PLN02814 102 RLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWT 181 (504)
T ss_pred hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEE
Confidence 99999888999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ecCCCceeeeccccccCCCCCCCCCC-CCCCCCCCCCChHHHHHHHHHHHHHHHHHH-----------------------
Q 013298 184 TVNEPNGFAMVGYDFGIAPPKRCSPP-LNNCSRGNSSTEPYMAVHHLLLAHASVARL----------------------- 239 (446)
Q Consensus 184 t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~----------------------- 239 (446)
|+|||++++..||..|. +||.++.. ..+|..+++.+++++++||+++||++|+++
T Consensus 182 T~NEP~~~~~~gy~~G~-~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~ 260 (504)
T PLN02814 182 TINEATIFAIGSYGQGI-RYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLS 260 (504)
T ss_pred eccccchhhhcccccCc-CCCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceee
Confidence 99999999999999998 48754421 013333344467899999999999999987
Q ss_pred ----------------------hhcccccCCChHHHHHHhccCCCCCCHHHHHHhcCCCCeeeeecCCceeeecCCCCC-
Q 013298 240 ----------------------VANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDNPSSL- 296 (446)
Q Consensus 240 ----------------------~~dpi~~G~yP~~~~~~~~~~lp~ft~~d~~~lkg~~DFiGiNyY~~~~v~~~~~~~- 296 (446)
|+||++.|+||+.|++.++.++|.|+++|++.|++++||||||||++.+|+..+...
T Consensus 261 P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~ 340 (504)
T PLN02814 261 PYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSI 340 (504)
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCc
Confidence 568999999999999999989999999999999999999999999999986432100
Q ss_pred -ccCCCCCccCccc--cc-ccccCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCCCCCCCchhHHHHHHHHHH
Q 013298 297 -KQEHRDWSADTAT--MA-FFEQDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPRHSSLEDISRVKYLHAYIG 372 (446)
Q Consensus 297 -~~~~~~~~~d~~~--~~-~~~~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~D~~Ri~yl~~~l~ 372 (446)
.....++..+.+. .. ...+..|| +|+|+||+.+|++++++|++|||||||||++..+++.++|+.|++||++||.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~ 419 (504)
T PLN02814 341 FPSMNEGFFTDMGAYIISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIG 419 (504)
T ss_pred ccccCCCcccccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHH
Confidence 0000111111110 00 00012344 6999999999999999999989999999999766678999999999999999
Q ss_pred HHHHHHHcCCceEEEEeecccccccccCCCcCccceEEEcCCCCCCccccchhHHHHHHHHhcCCCCC
Q 013298 373 SVLDAVRNGSNTRGYFVWSFLDVFELLDGYASSYGLYYVDRDDPDLKRYPKLSALWYSQFLKGRSVRS 440 (446)
Q Consensus 373 ~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii~~~~~~~ 440 (446)
+|++||+|||||+||++|||||||||.+||++||||++||++|++++|+||+|++||+++|+++...+
T Consensus 420 ~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~~~~~ 487 (504)
T PLN02814 420 AVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGTIDVA 487 (504)
T ss_pred HHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcCCChh
Confidence 99999999999999999999999999999999999999999985579999999999999998876444
No 5
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=2.1e-115 Score=910.44 Aligned_cols=396 Identities=50% Similarity=0.926 Sum_probs=337.4
Q ss_pred CCCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc-CCCCC--CCcccchhhhchHHHHHHHHHcCCCEEEecccc
Q 013298 26 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVPG--TGDVACDEYHKYKEDVKLMADTGLDAYRFSISW 102 (446)
Q Consensus 26 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~--~~~~a~d~y~~~~~Di~l~~~lG~~~~R~si~W 102 (446)
+.+||++|+||+|||||||||++++||||+|+||.|++. +++.+ ++++||||||||+|||+|||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 357999999999999999999999999999999999998 66654 788999999999999999999999999999999
Q ss_pred cccccCC-CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCcceE
Q 013298 103 SRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSY 181 (446)
Q Consensus 103 ~ri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~ 181 (446)
+||+|+| .|.+|++++++|+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999998 69999999999999999999999999999999999999998 799999999999999999999999999999
Q ss_pred EEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----------------------
Q 013298 182 WTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL---------------------- 239 (446)
Q Consensus 182 w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~---------------------- 239 (446)
|+|+|||++++..||+.|.+|||..+. ++.++++||+++||++|+++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~~-----------~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~ 229 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDSL-----------KAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPL 229 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSSTH-----------HHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEES
T ss_pred EEeccccceeecccccccccccccccc-----------chhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCC
Confidence 999999999999999999999996553 47899999999999999998
Q ss_pred ---------------------hhcccccCCChHHHHHHhccC--CCCCCHHHHHHhcCCCCeeeeecCCceeeecCCCCC
Q 013298 240 ---------------------VANPLVYGDYPKTMKQNAGSR--LPAFTDRESQQIKGSADFIGVINYCMIYIKDNPSSL 296 (446)
Q Consensus 240 ---------------------~~dpi~~G~yP~~~~~~~~~~--lp~ft~~d~~~lkg~~DFiGiNyY~~~~v~~~~~~~ 296 (446)
|+||++.|+||..|+..++.+ +|.|+++|++.|++++||+|||||++..++..+...
T Consensus 230 ~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~ 309 (455)
T PF00232_consen 230 SPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPS 309 (455)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSST
T ss_pred CccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcccc
Confidence 789999999999999999887 999999999999999999999999999998765321
Q ss_pred ccCCCCCccCcccccc----c-ccCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC---CCCCCchhHHHHHH
Q 013298 297 KQEHRDWSADTATMAF----F-EQDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR---HSSLEDISRVKYLH 368 (446)
Q Consensus 297 ~~~~~~~~~d~~~~~~----~-~~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~---~~~~~D~~Ri~yl~ 368 (446)
... ........... . .+..|+ +++|+||+.+|++++++|++|||+|||||++..+ .+.++|+.|++||+
T Consensus 310 ~~~--~~~~~~~~~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~ 386 (455)
T PF00232_consen 310 SPP--SYDSDAPFGQPYNPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQ 386 (455)
T ss_dssp SST--THEEEESEEEECETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHH
T ss_pred ccc--cccCCccccccccccccccccCc-ccccchHhhhhhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHH
Confidence 100 00000000000 0 012344 6889999999999999999999999999999876 36788999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEeecccccccccCCCcCccceEEEc-CCCCCCccccchhHHHHHHHHhcCCC
Q 013298 369 AYIGSVLDAVRNGSNTRGYFVWSFLDVFELLDGYASSYGLYYVD-RDDPDLKRYPKLSALWYSQFLKGRSV 438 (446)
Q Consensus 369 ~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD-~~~~~~~R~pK~S~~~y~~ii~~~~~ 438 (446)
+||.+|++||+|||||+||++|||||||||.+||++||||++|| ++| ++|+||+|++||+++|++||+
T Consensus 387 ~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~--~~R~pK~S~~~y~~~i~~ng~ 455 (455)
T PF00232_consen 387 DHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDT--LKRTPKKSAYWYKDFIRSNGF 455 (455)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTT--TEEEEBHHHHHHHHHHHHTEE
T ss_pred HHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCC--cCeeeccHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999 555 999999999999999999874
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=5.2e-114 Score=899.50 Aligned_cols=395 Identities=34% Similarity=0.642 Sum_probs=344.6
Q ss_pred CCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc-CCCCCCCcccchhhhchHHHHHHHHHcCCCEEEeccccccc
Q 013298 27 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRL 105 (446)
Q Consensus 27 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~~~~~a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri 105 (446)
.+||++|+||+|||||||||++++||||+|+||.|.+. +++ ++++||||||||+|||+|||+||+++|||||+||||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~--~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI 80 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF--TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRI 80 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC--CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhc
Confidence 35999999999999999999999999999999999875 443 788999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCcceEEEec
Q 013298 106 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTV 185 (446)
Q Consensus 106 ~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~ 185 (446)
+|++.|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.|+++||| |++|+||
T Consensus 81 ~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~ 158 (469)
T PRK13511 81 FPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTF 158 (469)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEc
Confidence 9998788999999999999999999999999999999999999975 9999999999999999999999999 9999999
Q ss_pred CCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--------------------------
Q 013298 186 NEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL-------------------------- 239 (446)
Q Consensus 186 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~-------------------------- 239 (446)
|||++++..||..|.+|||.+.. .++.++++||+++||++|+++
T Consensus 159 NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~ 228 (469)
T PRK13511 159 NEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDN 228 (469)
T ss_pred cchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCC
Confidence 99999999999999999996531 136799999999999999997
Q ss_pred -----------------hhcccccCCChHHHHHHhcc------CCCCCCHHHHHHhc---CCCCeeeeecCCceeeecCC
Q 013298 240 -----------------VANPLVYGDYPKTMKQNAGS------RLPAFTDRESQQIK---GSADFIGVINYCMIYIKDNP 293 (446)
Q Consensus 240 -----------------~~dpi~~G~yP~~~~~~~~~------~lp~ft~~d~~~lk---g~~DFiGiNyY~~~~v~~~~ 293 (446)
|+||++.|+||+.|++.+.. ..+.|+++|++.++ +++||||||||++.+|+..+
T Consensus 229 ~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~ 308 (469)
T PRK13511 229 PEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYD 308 (469)
T ss_pred HHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCC
Confidence 67899999999999887631 12479999999996 46899999999999987532
Q ss_pred CCCcc--CCCC-----CccCccc----cc-c-cccCCCCCCCCcHHHHHHHHHHHHHhCC-CCEEEeeCCCCCCC----C
Q 013298 294 SSLKQ--EHRD-----WSADTAT----MA-F-FEQDTAASSNEPSSLQIVLEYFKRVYGN-PPIYVHENGLATPR----H 355 (446)
Q Consensus 294 ~~~~~--~~~~-----~~~d~~~----~~-~-~~~~~g~~~i~P~gl~~~L~~~~~rY~~-ppI~ITENG~~~~~----~ 355 (446)
...+. .... +....+. .. . ..+..|| +++|+||+.+|++++++|++ |||||||||++..+ +
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~ 387 (469)
T PRK13511 309 GETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDG 387 (469)
T ss_pred CccccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCC
Confidence 11000 0000 0000000 00 0 0012344 69999999999999999997 68999999999654 3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHcCCceEEEEeecccccccccCCCcCccceEEEcCCCCCCccccchhHHHHHHHHhc
Q 013298 356 SSLEDISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFLDVFELLDGYASSYGLYYVDRDDPDLKRYPKLSALWYSQFLKG 435 (446)
Q Consensus 356 ~~~~D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii~~ 435 (446)
+.++|+.|++||++||.+|++||+|||||+||++|||+|||||.+||++||||++||++| ++|+||+|++||+++|++
T Consensus 388 ~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~--~~R~pK~S~~wy~~~i~~ 465 (469)
T PRK13511 388 KTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFET--QERYPKKSAYWYKKLAET 465 (469)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCc--CccccccHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred CCC
Q 013298 436 RSV 438 (446)
Q Consensus 436 ~~~ 438 (446)
|++
T Consensus 466 ~~~ 468 (469)
T PRK13511 466 KVI 468 (469)
T ss_pred CCC
Confidence 885
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=6.3e-114 Score=896.88 Aligned_cols=396 Identities=33% Similarity=0.614 Sum_probs=345.8
Q ss_pred CCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc-CCCCCCCcccchhhhchHHHHHHHHHcCCCEEEeccccccc
Q 013298 27 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRL 105 (446)
Q Consensus 27 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~~~~~a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri 105 (446)
.+||++|+||+|||||||||+++++|||+|+||.+.+. ++. ++++||||||||+|||+|||+||+++|||||+||||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~~--~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI 79 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWY--TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRI 79 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCCC--CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhc
Confidence 35999999999999999999999999999999998864 332 678999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCcceEEEec
Q 013298 106 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTV 185 (446)
Q Consensus 106 ~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~ 185 (446)
+|++.|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||+.|+++||+ |++|+||
T Consensus 80 ~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~ 157 (467)
T TIGR01233 80 FPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTF 157 (467)
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEe
Confidence 9998789999999999999999999999999999999999999975 9999999999999999999999998 9999999
Q ss_pred CCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--------------------------
Q 013298 186 NEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL-------------------------- 239 (446)
Q Consensus 186 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~-------------------------- 239 (446)
|||++++..||+.|.+|||.+.. .++.++++||+++||++|+++
T Consensus 158 NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~ 227 (467)
T TIGR01233 158 NEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPEN 227 (467)
T ss_pred cchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCC
Confidence 99999999999999999995331 136789999999999999998
Q ss_pred -----------------hhcccccCCChHHHHHHhcc----C--CCCCCHHHHHHh---cCCCCeeeeecCCceeeecCC
Q 013298 240 -----------------VANPLVYGDYPKTMKQNAGS----R--LPAFTDRESQQI---KGSADFIGVINYCMIYIKDNP 293 (446)
Q Consensus 240 -----------------~~dpi~~G~yP~~~~~~~~~----~--lp~ft~~d~~~l---kg~~DFiGiNyY~~~~v~~~~ 293 (446)
|+||++.|+||+.|++.++. . +|.++++|++.| ++++||||||||++.+|+..+
T Consensus 228 ~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~ 307 (467)
T TIGR01233 228 PADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFD 307 (467)
T ss_pred HHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCC
Confidence 66899999999999987753 2 377999999999 589999999999999997531
Q ss_pred CCCc----cC---CCCC--ccCcc--cccc--cccCCCCCCCCcHHHHHHHHHHHHHhCC-CCEEEeeCCCCCCC---CC
Q 013298 294 SSLK----QE---HRDW--SADTA--TMAF--FEQDTAASSNEPSSLQIVLEYFKRVYGN-PPIYVHENGLATPR---HS 356 (446)
Q Consensus 294 ~~~~----~~---~~~~--~~d~~--~~~~--~~~~~g~~~i~P~gl~~~L~~~~~rY~~-ppI~ITENG~~~~~---~~ 356 (446)
.... .. .... ..... .... ..+..|| +|+|+||+.+|++++++|++ |||||||||++..+ ++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g 386 (467)
T TIGR01233 308 GETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDN 386 (467)
T ss_pred CccccccCCccccCcccccCCCcccccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCC
Confidence 1000 00 0000 00000 0000 0012344 69999999999999999997 78999999999754 46
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCceEEEEeecccccccccCCCcCccceEEEcCCCCCCccccchhHHHHHHHHhcC
Q 013298 357 SLEDISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFLDVFELLDGYASSYGLYYVDRDDPDLKRYPKLSALWYSQFLKGR 436 (446)
Q Consensus 357 ~~~D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii~~~ 436 (446)
.++|+.||+||++||.+|++||+|||||+||++|||+|||||.+||++||||++||++| ++|+||+|++||+++|++|
T Consensus 387 ~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t--~~R~~K~S~~wy~~ii~~~ 464 (467)
T TIGR01233 387 TVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDT--QERYPKKSAHWYKKLAETQ 464 (467)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCC--CccccccHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999999 9999999999999999998
Q ss_pred CCC
Q 013298 437 SVR 439 (446)
Q Consensus 437 ~~~ 439 (446)
+++
T Consensus 465 ~~~ 467 (467)
T TIGR01233 465 VIE 467 (467)
T ss_pred CCC
Confidence 763
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.6e-113 Score=895.46 Aligned_cols=400 Identities=32% Similarity=0.555 Sum_probs=345.1
Q ss_pred CCCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc-CCC---C----------C---CCcccchhhhchHHHHHHH
Q 013298 26 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNV---P----------G---TGDVACDEYHKYKEDVKLM 88 (446)
Q Consensus 26 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~---~----------~---~~~~a~d~y~~~~~Di~l~ 88 (446)
..+||++|+||+|||||||||++++||||+|+||.|.+. +++ . + ++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 456999999999999999999999999999999999874 433 1 0 4688999999999999999
Q ss_pred HHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHH
Q 013298 89 ADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAY 167 (446)
Q Consensus 89 ~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y 167 (446)
|+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999974 569999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHhcCcceEEEecCCCceeeecccc-ccC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH------
Q 013298 168 ADVCFREFGDRVSYWTTVNEPNGFAMVGYD-FGI-APPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL------ 239 (446)
Q Consensus 168 a~~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~------ 239 (446)
|+.|+++|||+|++|+|||||++++..||. .|. +|||... .+++++++||+++||++|+++
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~~~ 231 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEVDP 231 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999888876 454 3676422 235799999999999999998
Q ss_pred -----------------------------------hhcccccCCChHHHHHHhcc--CCCCCCHHHHHHhc-CCCCeeee
Q 013298 240 -----------------------------------VANPLVYGDYPKTMKQNAGS--RLPAFTDRESQQIK-GSADFIGV 281 (446)
Q Consensus 240 -----------------------------------~~dpi~~G~yP~~~~~~~~~--~lp~ft~~d~~~lk-g~~DFiGi 281 (446)
|+||++.|+||+.|+..++. .+|.|+++|++.|+ +++|||||
T Consensus 232 ~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGi 311 (478)
T PRK09593 232 ENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISF 311 (478)
T ss_pred CCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEE
Confidence 56899999999999998865 46789999999996 99999999
Q ss_pred ecCCceeeecCCCCCccCCCCCccCcccccccc-cCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC----CC
Q 013298 282 INYCMIYIKDNPSSLKQEHRDWSADTATMAFFE-QDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR----HS 356 (446)
Q Consensus 282 NyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~-~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~~ 356 (446)
|||++.+|+..+........... ....+.... +..|| +|+|+||+.+|+++++||++ ||||||||++..+ ++
T Consensus 312 NyYt~~~v~~~~~~~~~~~~~~~-~~~~~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG~~~~d~~~~~g 388 (478)
T PRK09593 312 SYYSSRVASGDPKVNEKTAGNIF-ASLKNPYLKASEWGW-QIDPLGLRITLNTIWDRYQK-PMFIVENGLGAVDKPDENG 388 (478)
T ss_pred ecccCcccccCCCCCCCCCCCcc-ccccCCCcccCCCCC-EECHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCCCCC
Confidence 99999999753210000000000 000000000 12345 79999999999999999987 6999999999654 45
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH-cCCceEEEEeecccccccccCC-CcCccceEEEcCCCC---CCccccchhHHHHHH
Q 013298 357 SLEDISRVKYLHAYIGSVLDAVR-NGSNTRGYFVWSFLDVFELLDG-YASSYGLYYVDRDDP---DLKRYPKLSALWYSQ 431 (446)
Q Consensus 357 ~~~D~~Ri~yl~~~l~~v~~Ai~-dGv~V~GY~~WSL~Dn~EW~~G-y~~rfGL~~VD~~~~---~~~R~pK~S~~~y~~ 431 (446)
.++|+.|++||++||.+|++||+ |||||+|||+|||+|||||.+| |++||||++||++|. +++|+||+|++||++
T Consensus 389 ~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ 468 (478)
T PRK09593 389 YVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKK 468 (478)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHHHHHH
Confidence 68999999999999999999995 9999999999999999999999 999999999999964 489999999999999
Q ss_pred HHhcCCCC
Q 013298 432 FLKGRSVR 439 (446)
Q Consensus 432 ii~~~~~~ 439 (446)
+|++|+.+
T Consensus 469 ii~~~~~~ 476 (478)
T PRK09593 469 VIASNGED 476 (478)
T ss_pred HHHhCCcC
Confidence 99998864
No 9
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-114 Score=870.59 Aligned_cols=399 Identities=39% Similarity=0.726 Sum_probs=351.7
Q ss_pred CCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc---CCCCC--CCcccchhhhchHHHHHHHHHcCCCEEEeccc
Q 013298 27 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA---GNVPG--TGDVACDEYHKYKEDVKLMADTGLDAYRFSIS 101 (446)
Q Consensus 27 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~---~~~~~--~~~~a~d~y~~~~~Di~l~~~lG~~~~R~si~ 101 (446)
.+||++|+||+||||+|+|||+++||||+|+||.|.+. +++.. .+++|+||||||+|||+|||+||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 57999999999999999999999999999999999993 33332 78899999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCcce
Q 013298 102 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVS 180 (446)
Q Consensus 102 W~ri~P~~~g-~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~ 180 (446)
||||+|++.+ .+|++||++|+++||+|+++||+|+|||+|||+|.||++++|||.|++++++|++||+.|+++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999864 899999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---------------------
Q 013298 181 YWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL--------------------- 239 (446)
Q Consensus 181 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~--------------------- 239 (446)
+|+|||||++++..||..|.+||+..+. +..++++||+++|||+|+++
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~~-----------~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP 230 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVDP-----------KAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYP 230 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccCH-----------HHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCC
Confidence 9999999999999999999999997763 37899999999999999997
Q ss_pred ---------------------hhcccccCCChHHHHHHhccC--CCCCCHHHHHHhc-CCCCeeeeecCCc-eeeecCCC
Q 013298 240 ---------------------VANPLVYGDYPKTMKQNAGSR--LPAFTDRESQQIK-GSADFIGVINYCM-IYIKDNPS 294 (446)
Q Consensus 240 ---------------------~~dpi~~G~yP~~~~~~~~~~--lp~ft~~d~~~lk-g~~DFiGiNyY~~-~~v~~~~~ 294 (446)
|+||++.|.||..+...+... +|.++++|++.|| +++||||+|||++ .+++..+.
T Consensus 231 ~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~ 310 (460)
T COG2723 231 LSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPR 310 (460)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCC
Confidence 889999999999988887654 7999999999998 5699999999994 44443321
Q ss_pred CCcc-CCCCCccCcccccccc--cCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC---CCCCCchhHHHHHH
Q 013298 295 SLKQ-EHRDWSADTATMAFFE--QDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR---HSSLEDISRVKYLH 368 (446)
Q Consensus 295 ~~~~-~~~~~~~d~~~~~~~~--~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~---~~~~~D~~Ri~yl~ 368 (446)
...+ ....+. +. +..+.. +..|| +|||+||+.+|+++++||+ +||+|||||++..+ .+.++|++||+||+
T Consensus 311 ~~~~~~~~~~~-~~-~~~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~ 386 (460)
T COG2723 311 YVSGYGPGGFF-TS-VPNPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEVDFDGINDDYRIDYLK 386 (460)
T ss_pred cCCcccccccc-cc-cCCCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCcccccccCCcCchHHHHHHH
Confidence 1000 000010 00 000000 12344 8999999999999999999 68999999999877 34589999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEeecccccccccCCCcCccceEEEcCCCCCCccccchhHHHHHHHHhcCCCCCCC
Q 013298 369 AYIGSVLDAVRNGSNTRGYFVWSFLDVFELLDGYASSYGLYYVDRDDPDLKRYPKLSALWYSQFLKGRSVRSDE 442 (446)
Q Consensus 369 ~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii~~~~~~~~~ 442 (446)
+||.+|++||+|||+|+||++||+|||+||.+||++||||++||++|. ++|+||+|++|||+||++|| ..++
T Consensus 387 ~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~-~~R~~KkS~~WyK~vi~sng-~~~~ 458 (460)
T COG2723 387 EHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTD-LERTPKKSFYWYKEVIESNG-IDED 458 (460)
T ss_pred HHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEccccc-ceeeecCceeeeHHHHhcCC-Cccc
Confidence 999999999999999999999999999999999999999999999983 69999999999999999999 4443
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=5.8e-113 Score=890.73 Aligned_cols=396 Identities=32% Similarity=0.590 Sum_probs=339.7
Q ss_pred CCCCCCeEeeeecchhccCCcCCCCCCCccchhhh---cc--CCCC-----C---CCcccchhhhchHHHHHHHHHcCCC
Q 013298 28 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFA---HA--GNVP-----G---TGDVACDEYHKYKEDVKLMADTGLD 94 (446)
Q Consensus 28 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~~--~~~~-----~---~~~~a~d~y~~~~~Di~l~~~lG~~ 94 (446)
+||++|+||+|||||||||++++||||+|+||.|. +. +++. + ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 31 3331 1 4688999999999999999999999
Q ss_pred EEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHH
Q 013298 95 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFR 173 (446)
Q Consensus 95 ~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 173 (446)
+|||||+||||+|+|. +.+|++||+||+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999975 568999999999999999999999999999999999999988999999999999999999999
Q ss_pred HhcCcceEEEecCCCceeeec-----ccc-ccC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-------
Q 013298 174 EFGDRVSYWTTVNEPNGFAMV-----GYD-FGI-APPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL------- 239 (446)
Q Consensus 174 ~~~~~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~------- 239 (446)
+|||+|++|+|||||++++.. ||. .|. +|||... .+..++++||+++||++|+++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~~~~~~~h~~llAha~A~~~~~~~~~~ 231 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQIMYQAAHYELVASALAVKTGHEINPD 231 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998766 343 343 3555321 135799999999999999997
Q ss_pred ----------------------------------hhcccccCCChHHHHHHhccC--CCCCCHHHHHHh-cCCCCeeeee
Q 013298 240 ----------------------------------VANPLVYGDYPKTMKQNAGSR--LPAFTDRESQQI-KGSADFIGVI 282 (446)
Q Consensus 240 ----------------------------------~~dpi~~G~yP~~~~~~~~~~--lp~ft~~d~~~l-kg~~DFiGiN 282 (446)
|+||++.|+||+.|++.++.+ .|.|+++|++.| ++++||||||
T Consensus 232 ~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiN 311 (476)
T PRK09589 232 FQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFS 311 (476)
T ss_pred CcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEe
Confidence 568999999999999998763 478999999988 5999999999
Q ss_pred cCCceeeecCCCCCccCCCCCccCcc--cccccc-cCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC----C
Q 013298 283 NYCMIYIKDNPSSLKQEHRDWSADTA--TMAFFE-QDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR----H 355 (446)
Q Consensus 283 yY~~~~v~~~~~~~~~~~~~~~~d~~--~~~~~~-~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~ 355 (446)
||++.+|+..... +. .....+.. .+.... +..|| +|+|+||+.+|++++++|++ ||||||||++..+ +
T Consensus 312 yYts~~v~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~-Pi~ItENG~~~~d~~~~~ 386 (476)
T PRK09589 312 YYMSFATKFHEDN-PQ--LDYVETRDLVSNPYVKASEWGW-QIDPAGLRYSLNWFWDHYQL-PLFIVENGFGAIDQREAD 386 (476)
T ss_pred cccCcccccCCCC-CC--CCcccccccccCCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEEeCCcccCCCCCcC
Confidence 9999988642210 00 00000000 000000 12344 79999999999999999987 5999999999755 4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH-HcCCceEEEEeecccccccccCC-CcCccceEEEcCCCC---CCccccchhHHHHH
Q 013298 356 SSLEDISRVKYLHAYIGSVLDAV-RNGSNTRGYFVWSFLDVFELLDG-YASSYGLYYVDRDDP---DLKRYPKLSALWYS 430 (446)
Q Consensus 356 ~~~~D~~Ri~yl~~~l~~v~~Ai-~dGv~V~GY~~WSL~Dn~EW~~G-y~~rfGL~~VD~~~~---~~~R~pK~S~~~y~ 430 (446)
+.++|+.||+||++||.+|++|| +|||||+|||+|||||||||.+| |++||||++||++|+ +++|+||+|++||+
T Consensus 387 g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~ 466 (476)
T PRK09589 387 GTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYR 466 (476)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHHHHH
Confidence 56899999999999999999999 79999999999999999999999 999999999999974 47999999999999
Q ss_pred HHHhcCCCC
Q 013298 431 QFLKGRSVR 439 (446)
Q Consensus 431 ~ii~~~~~~ 439 (446)
++|++|+.+
T Consensus 467 ~~i~~ng~~ 475 (476)
T PRK09589 467 DVIANNGEN 475 (476)
T ss_pred HHHHhcCCC
Confidence 999998764
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2.5e-112 Score=885.33 Aligned_cols=401 Identities=30% Similarity=0.610 Sum_probs=344.2
Q ss_pred CCCCCCCCCCeEeeeecchhccCCcCCCCCCCccchhhh---cc--CCC-----CC---CCcccchhhhchHHHHHHHHH
Q 013298 24 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV-----PG---TGDVACDEYHKYKEDVKLMAD 90 (446)
Q Consensus 24 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~~--~~~-----~~---~~~~a~d~y~~~~~Di~l~~~ 90 (446)
+++.+||++|+||+|||||||||++++||||+|+||.|. +. +++ .+ ++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 356789999999999999999999999999999999998 31 333 11 568899999999999999999
Q ss_pred cCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHH
Q 013298 91 TGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYAD 169 (446)
Q Consensus 91 lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 169 (446)
||+|+|||||+|+||+|+|. +.+|+++|++|+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 99999999999999999975 56899999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHhcCcceEEEecCCCcee-----eeccccc-cCC-CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---
Q 013298 170 VCFREFGDRVSYWTTVNEPNGF-----AMVGYDF-GIA-PPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL--- 239 (446)
Q Consensus 170 ~~~~~~~~~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~--- 239 (446)
.|+++|||+|++|+|+|||+++ +..||.. |.+ ||+... .++.++++||+++||++|+++
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~-----------~~~~~~~~h~~llAHa~A~~~~~~ 229 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENP-----------EETMYQVLHHQFVASALAVKAARR 229 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 6678874 665 443211 135799999999999999998
Q ss_pred --------------------------------------hhcccccCCChHHHHHHhccCC--CCCCHHHHHHh-cCCCCe
Q 013298 240 --------------------------------------VANPLVYGDYPKTMKQNAGSRL--PAFTDRESQQI-KGSADF 278 (446)
Q Consensus 240 --------------------------------------~~dpi~~G~yP~~~~~~~~~~l--p~ft~~d~~~l-kg~~DF 278 (446)
|+||++.|+||+.|++.++.+. |.++++|++.| ++++||
T Consensus 230 ~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DF 309 (477)
T PRK15014 230 INPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDY 309 (477)
T ss_pred hCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 4588899999999999987753 78999999988 589999
Q ss_pred eeeecCCceeeecCCCCCccCCCCCccCcccccccc-cCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC---
Q 013298 279 IGVINYCMIYIKDNPSSLKQEHRDWSADTATMAFFE-QDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR--- 354 (446)
Q Consensus 279 iGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~-~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~--- 354 (446)
||||||++.+|+..+.. ......+.... .+.... +..|| +|+|+||+.+|+++++||++ ||||||||++..+
T Consensus 310 lGiNyYt~~~v~~~~~~-~~~~~~~~~~~-~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG~~~~d~~~ 385 (477)
T PRK15014 310 LGFSYYMTNAVKAEGGT-GDAISGFEGSV-PNPYVKASDWGW-QIDPVGLRYALCELYERYQK-PLFIVENGFGAYDKVE 385 (477)
T ss_pred EEEcceeCeeeccCCCC-CCCcccccccc-CCCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEeCCCCCCCCCcC
Confidence 99999999998743210 00000110000 000000 12344 79999999999999999987 5999999999754
Q ss_pred -CCCCCchhHHHHHHHHHHHHHHHHH-cCCceEEEEeecccccccccCC-CcCccceEEEcCCCC---CCccccchhHHH
Q 013298 355 -HSSLEDISRVKYLHAYIGSVLDAVR-NGSNTRGYFVWSFLDVFELLDG-YASSYGLYYVDRDDP---DLKRYPKLSALW 428 (446)
Q Consensus 355 -~~~~~D~~Ri~yl~~~l~~v~~Ai~-dGv~V~GY~~WSL~Dn~EW~~G-y~~rfGL~~VD~~~~---~~~R~pK~S~~~ 428 (446)
++.++|+.||+||++||.+|++||+ |||||+||++|||||||||.+| |++||||++||++|. +++|+||+|++|
T Consensus 386 ~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~w 465 (477)
T PRK15014 386 EDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNW 465 (477)
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccHHHH
Confidence 4678999999999999999999996 9999999999999999999999 999999999999974 479999999999
Q ss_pred HHHHHhcCCCC
Q 013298 429 YSQFLKGRSVR 439 (446)
Q Consensus 429 y~~ii~~~~~~ 439 (446)
|+++|++|+.+
T Consensus 466 y~~ii~~ng~~ 476 (477)
T PRK15014 466 YKEVIASNGEK 476 (477)
T ss_pred HHHHHHhcCCC
Confidence 99999998753
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=6.7e-112 Score=880.61 Aligned_cols=398 Identities=30% Similarity=0.554 Sum_probs=346.2
Q ss_pred CCCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc-CCCC------------C----CCcccchhhhchHHHHHHHHH
Q 013298 28 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVP------------G----TGDVACDEYHKYKEDVKLMAD 90 (446)
Q Consensus 28 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~------------~----~~~~a~d~y~~~~~Di~l~~~ 90 (446)
+||++|+||+|||||||||++++||||+|+||.|.+. +++. + ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 4999999999999999999999999999999999984 4331 1 468899999999999999999
Q ss_pred cCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHH
Q 013298 91 TGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYAD 169 (446)
Q Consensus 91 lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 169 (446)
||+|+|||||+|+||+|++. +.+|++++++|+++|++|+++||+|+|||+|||+|+||++++|||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975 56899999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHhcCcceEEEecCCCceeeecccc-ccC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--------
Q 013298 170 VCFREFGDRVSYWTTVNEPNGFAMVGYD-FGI-APPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL-------- 239 (446)
Q Consensus 170 ~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~-------- 239 (446)
.|+++|||+|++|+|||||++++..||. .|. +|||... .+..++++||+++||++|+++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~~~~ 231 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVNPQN 231 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999996 664 5887422 135799999999999999987
Q ss_pred ---------------------------------hhcccccCCChHHHHHHhccC--CCCCCHHHHHHhcCCCCeeeeecC
Q 013298 240 ---------------------------------VANPLVYGDYPKTMKQNAGSR--LPAFTDRESQQIKGSADFIGVINY 284 (446)
Q Consensus 240 ---------------------------------~~dpi~~G~yP~~~~~~~~~~--lp~ft~~d~~~lkg~~DFiGiNyY 284 (446)
++||++.|+||+.|++.++.+ +|.|+++|++.|++++||||||||
T Consensus 232 ~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyY 311 (474)
T PRK09852 232 QVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYY 311 (474)
T ss_pred eEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccc
Confidence 568999999999999998754 789999999999999999999999
Q ss_pred CceeeecCCCCCccCCCCCccCcccccccc-cCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC----CCCCC
Q 013298 285 CMIYIKDNPSSLKQEHRDWSADTATMAFFE-QDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR----HSSLE 359 (446)
Q Consensus 285 ~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~-~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~~~~~ 359 (446)
++.+|+.............. ....+.... +..|| +|+|+||+.+|+++++||++ ||||||||++..+ ++.++
T Consensus 312 t~~~v~~~~~~~~~~~~~~~-~~~~~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG~~~~d~~~~~g~i~ 388 (474)
T PRK09852 312 ASRCASAEMNANNSSAANVV-KSLRNPYLQVSDWGW-GIDPLGLRITMNMMYDRYQK-PLFLVENGLGAKDEIAANGEIN 388 (474)
T ss_pred cCeecccCCCCCCCCcCCce-ecccCCCcccCCCCC-eeChHHHHHHHHHHHHhcCC-CEEEeCCCCCCCCCcCCCCccC
Confidence 99998753210000000000 000000000 12344 79999999999999999987 5999999999664 45689
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCceEEEEeecccccccccCC-CcCccceEEEcCCCC---CCccccchhHHHHHHHHhc
Q 013298 360 DISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFLDVFELLDG-YASSYGLYYVDRDDP---DLKRYPKLSALWYSQFLKG 435 (446)
Q Consensus 360 D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~G-y~~rfGL~~VD~~~~---~~~R~pK~S~~~y~~ii~~ 435 (446)
|..||+||++||.+|++||+|||||+|||+|||||||||.+| |++||||++||++|. +++|+||+|++||+++|++
T Consensus 389 D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~~ 468 (474)
T PRK09852 389 DDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIAS 468 (474)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 999999999999974 4799999999999999999
Q ss_pred CCCC
Q 013298 436 RSVR 439 (446)
Q Consensus 436 ~~~~ 439 (446)
|+..
T Consensus 469 ng~~ 472 (474)
T PRK09852 469 NGED 472 (474)
T ss_pred CCcc
Confidence 9864
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=5.3e-108 Score=845.78 Aligned_cols=379 Identities=44% Similarity=0.818 Sum_probs=340.3
Q ss_pred CCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc-CCCCC--CCcccchhhhchHHHHHHHHHcCCCEEEeccccccc
Q 013298 29 FPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVPG--TGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRL 105 (446)
Q Consensus 29 fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~--~~~~a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri 105 (446)
||++|+||+|||||||||+++++|||+|+||.+.+. +++.+ ++++||||||||+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999885 55433 778999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCcceEEEec
Q 013298 106 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTV 185 (446)
Q Consensus 106 ~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~ 185 (446)
+|+|.|.+|++++++|+++|++|+++||+|||||+|||+|+||+++ |||.|+++++.|++||+.|+++|||+|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9997689999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--------------------------
Q 013298 186 NEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARL-------------------------- 239 (446)
Q Consensus 186 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~-------------------------- 239 (446)
|||++++..||..|.+||+.++. +..++++||+++||++|+++
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~ 228 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL-----------RAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSP 228 (427)
T ss_pred cCcceecccchhhccCCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCH
Confidence 99999999999999999985431 25789999999999999998
Q ss_pred ----------------hhcccccCCChHHHHHHhccCCCCCCHHHHHHhcCCCCeeeeecCCceeeecCCCCCccCCCCC
Q 013298 240 ----------------VANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDNPSSLKQEHRDW 303 (446)
Q Consensus 240 ----------------~~dpi~~G~yP~~~~~~~~~~lp~ft~~d~~~lkg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~ 303 (446)
|+||++.|+||+.|++.++ .+|.|+++|++.+++++||||||||++.+|+..... ......
T Consensus 229 ~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~-~~~~~~- 305 (427)
T TIGR03356 229 EDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGT-GAGFVE- 305 (427)
T ss_pred HHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCC-CCCccc-
Confidence 6699999999999999987 479999999999999999999999999998753210 000000
Q ss_pred ccCcccccccccCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC---CCCCCchhHHHHHHHHHHHHHHHHHc
Q 013298 304 SADTATMAFFEQDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR---HSSLEDISRVKYLHAYIGSVLDAVRN 380 (446)
Q Consensus 304 ~~d~~~~~~~~~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~---~~~~~D~~Ri~yl~~~l~~v~~Ai~d 380 (446)
...... .+..|| +++|+||+.+|+++++||++|||+|||||++..+ ++.++|+.|++||++||++|++||+|
T Consensus 306 -~~~~~~---~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~d 380 (427)
T TIGR03356 306 -VPEGVP---KTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEE 380 (427)
T ss_pred -cCCCCC---cCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHC
Confidence 000000 012344 7999999999999999999888999999999654 35688999999999999999999999
Q ss_pred CCceEEEEeecccccccccCCCcCccceEEEcCCCCCCccccchhHHHH
Q 013298 381 GSNTRGYFVWSFLDVFELLDGYASSYGLYYVDRDDPDLKRYPKLSALWY 429 (446)
Q Consensus 381 Gv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD~~~~~~~R~pK~S~~~y 429 (446)
||||+||++|||+|||||.+||++||||++||++| ++|+||+|++||
T Consensus 381 Gv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~--~~R~~K~S~~wy 427 (427)
T TIGR03356 381 GVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYET--QKRTPKDSAKWY 427 (427)
T ss_pred CCCEEEEEecccccccchhcccccccceEEECCCC--CcccccceeeeC
Confidence 99999999999999999999999999999999999 999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.67 E-value=2.4e-15 Score=145.91 Aligned_cols=244 Identities=18% Similarity=0.234 Sum_probs=152.7
Q ss_pred cccccccCCCCCCChhhHHHHHHHHHHHHHCCCEE--EEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCc
Q 013298 101 SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP--HVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDR 178 (446)
Q Consensus 101 ~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~ 178 (446)
.|++++|++ |.+| ++..|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+++
T Consensus 2 kW~~~ep~~-G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPSR-GQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCCC-CccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCCc
Confidence 699999998 9999 677889999999999995 3456778899999742 2 5567899999999999999999
Q ss_pred ceEEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcc---cccCCChHHHHH
Q 013298 179 VSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLVANP---LVYGDYPKTMKQ 255 (446)
Q Consensus 179 v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~~~dp---i~~G~yP~~~~~ 255 (446)
|..|.++|||......|+....|.+.. +.+ -+..|...|.++ +| ++.++|-...-.
T Consensus 74 i~~wdV~NE~~~~~~~~~~~~~w~~~~-------------G~~------~i~~af~~ar~~--~P~a~l~~Ndy~~~~~~ 132 (254)
T smart00633 74 IYAWDVVNEALHDNGSGLRRSVWYQIL-------------GED------YIEKAFRYAREA--DPDAKLFYNDYNTEEPN 132 (254)
T ss_pred ceEEEEeeecccCCCcccccchHHHhc-------------ChH------HHHHHHHHHHHh--CCCCEEEEeccCCcCcc
Confidence 999999999985210001000110000 001 122233333332 33 234444311000
Q ss_pred HhccCCCCCCHHHHHHh---cCCCCeeeeecCCceeeecCCCCCccCCCCCccCcccccccccCCCCCCCCcHHHHHHHH
Q 013298 256 NAGSRLPAFTDRESQQI---KGSADFIGVINYCMIYIKDNPSSLKQEHRDWSADTATMAFFEQDTAASSNEPSSLQIVLE 332 (446)
Q Consensus 256 ~~~~~lp~ft~~d~~~l---kg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~i~P~gl~~~L~ 332 (446)
.++ ..+ -+-++.+ ..++|-||++.... . . ...|..+...|+
T Consensus 133 --~k~-~~~-~~~v~~l~~~g~~iDgiGlQ~H~~---~--~---------------------------~~~~~~~~~~l~ 176 (254)
T smart00633 133 --AKR-QAI-YELVKKLKAKGVPIDGIGLQSHLS---L--G---------------------------SPNIAEIRAALD 176 (254)
T ss_pred --HHH-HHH-HHHHHHHHHCCCccceeeeeeeec---C--C---------------------------CCCHHHHHHHHH
Confidence 000 000 0001122 23588899853211 0 0 012346889999
Q ss_pred HHHHHhCCCCEEEeeCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCceEEEEeecccccccccCCCcCccceEEEc
Q 013298 333 YFKRVYGNPPIYVHENGLATPRHSSLEDISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFLDVFELLDGYASSYGLYYVD 412 (446)
Q Consensus 333 ~~~~rY~~ppI~ITENG~~~~~~~~~~D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~Gy~~rfGL~~VD 412 (446)
.+.+. +. ||+|||.++...+ ....+.+++++++..+.+. -.|.|.++|.+.|...|..+ .+.||+.-
T Consensus 177 ~~~~~-g~-pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~~~W~~~--~~~~L~d~- 243 (254)
T smart00633 177 RFASL-GL-EIQITELDISGYP----NPQAQAADYEEVFKACLAH----PAVTGVTVWGVTDKYSWLDG--GAPLLFDA- 243 (254)
T ss_pred HHHHc-CC-ceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccCCcccCC--CCceeECC-
Confidence 98765 54 7999999998531 2256677777776655432 26899999999999999865 56788832
Q ss_pred CCCCCCccccchhHHH
Q 013298 413 RDDPDLKRYPKLSALW 428 (446)
Q Consensus 413 ~~~~~~~R~pK~S~~~ 428 (446)
.-+||++..+
T Consensus 244 ------~~~~kpa~~~ 253 (254)
T smart00633 244 ------NYQPKPAYWA 253 (254)
T ss_pred ------CCCCChhhhc
Confidence 3566877654
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.55 E-value=7.3e-14 Score=136.28 Aligned_cols=108 Identities=22% Similarity=0.386 Sum_probs=90.4
Q ss_pred chHHHHHHHHHcCCCEEEecccccccc-cCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCC-CC
Q 013298 80 KYKEDVKLMADTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGW-IN 157 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~W~ri~-P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~-~~ 157 (446)
-.++|++.||++|+|++|+.|.|..++ |.+.+.++...++.++++|+.|.++||.+|++||+. |.|.... ++. ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 569999999999999999999998888 565456999999999999999999999999999975 7774332 333 34
Q ss_pred hHhHHHHHHHHHHHHHHhcC--cceEEEecCCCce
Q 013298 158 RMIVKDFTAYADVCFREFGD--RVSYWTTVNEPNG 190 (446)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~ 190 (446)
....+.|.++++.++++|++ .|..|.++|||..
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~ 133 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNG 133 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCS
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCccc
Confidence 45678899999999999944 6889999999985
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.47 E-value=2.3e-12 Score=131.99 Aligned_cols=108 Identities=24% Similarity=0.445 Sum_probs=87.9
Q ss_pred hchHHHHHHHHHcCCCEEEe-cccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhh-----
Q 013298 79 HKYKEDVKLMADTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEY----- 152 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~-si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~----- 152 (446)
..+++|+++||++|+|++|+ .++|+++||++ |.+| +..+|++|+.+.++||++++.+.+...|.|+.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-Ceee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 56899999999999999997 56999999998 9999 78899999999999999999999999999998642
Q ss_pred ----------CCC-----CChHhHHHHHHHHHHHHHHhcCc--ceEEEecCCCce
Q 013298 153 ----------GGW-----INRMIVKDFTAYADVCFREFGDR--VSYWTTVNEPNG 190 (446)
Q Consensus 153 ----------gg~-----~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~ 190 (446)
|.. .+|...+.+.++++.++++|++. |..|.+.|||..
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 211 25677888899999999999984 778999999975
No 17
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.31 E-value=1.6e-10 Score=125.57 Aligned_cols=259 Identities=17% Similarity=0.195 Sum_probs=150.6
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHh-------h
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALED-------E 151 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~-------~ 151 (446)
..+..|+++||++|+|++|+|- .|. + ..+++.|-+.||-++.-+.-+....|... .
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~-----~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPY-----S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCC-----C-------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 4578999999999999999962 121 2 16788899999988876533322222210 0
Q ss_pred hCCCC----ChHhHHHHHHHHHHHHHHhcCc--ceEEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHH
Q 013298 152 YGGWI----NRMIVKDFTAYADVCFREFGDR--VSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMA 225 (446)
Q Consensus 152 ~gg~~----~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~ 225 (446)
...|. +++..+.+.+-++.+++++.++ |-.|.+-||+... .. ....
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~--------------~~--------------~~~~ 427 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR--------------EQ--------------GARE 427 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc--------------ch--------------hHHH
Confidence 01222 3567788888899999999875 6689999996310 00 1112
Q ss_pred HHHHHHHHHHHHHHhhcccccCCChHHHHHHhccCCCCCCHHHHHHhcCCCCeeeeecCCceeeecCCCCCccCCCCCcc
Q 013298 226 VHHLLLAHASVARLVANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDNPSSLKQEHRDWSA 305 (446)
Q Consensus 226 ~~nll~Ah~~a~~~~~dpi~~G~yP~~~~~~~~~~lp~ft~~d~~~lkg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~ 305 (446)
.+..+.+.+++.+. ..|+..+.. + ...+ . ...+...+|++|+|.|...+.....
T Consensus 428 ~~~~l~~~~k~~Dp-tR~vt~~~~---~-----~~~~--~---~~~~~~~~Dv~~~N~Y~~wy~~~~~------------ 481 (604)
T PRK10150 428 YFAPLAELTRKLDP-TRPVTCVNV---M-----FATP--D---TDTVSDLVDVLCLNRYYGWYVDSGD------------ 481 (604)
T ss_pred HHHHHHHHHHhhCC-CCceEEEec---c-----cCCc--c---cccccCcccEEEEcccceecCCCCC------------
Confidence 22222233333222 122222210 0 0000 0 1122345899999998765432110
Q ss_pred CcccccccccCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC------CCCCCchhHHHHHHHHHHHHHHHHH
Q 013298 306 DTATMAFFEQDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR------HSSLEDISRVKYLHAYIGSVLDAVR 379 (446)
Q Consensus 306 d~~~~~~~~~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~------~~~~~D~~Ri~yl~~~l~~v~~Ai~ 379 (446)
.. -.-..+...+....+.+ .+|++|||.|.+... ...-.+++...|+.+|+..+.
T Consensus 482 ---~~-----------~~~~~~~~~~~~~~~~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~---- 542 (604)
T PRK10150 482 ---LE-----------TAEKVLEKELLAWQEKL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD---- 542 (604)
T ss_pred ---HH-----------HHHHHHHHHHHHHHHhc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----
Confidence 00 00012444555556666 457999999965421 122345667777777776443
Q ss_pred cCCceEEEEeecccccccccCCC----cCccceEEEcCCCCCCccccchhHHHHHHHHhc
Q 013298 380 NGSNTRGYFVWSFLDVFELLDGY----ASSYGLYYVDRDDPDLKRYPKLSALWYSQFLKG 435 (446)
Q Consensus 380 dGv~V~GY~~WSL~Dn~EW~~Gy----~~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii~~ 435 (446)
+=-.|.|-|.|.+.|- ....|. ....||+. ..|+||++++.||++-+.
T Consensus 543 ~~p~~~G~~iW~~~D~-~~~~g~~~~~g~~~Gl~~-------~dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 543 RVPAVVGEQVWNFADF-ATSQGILRVGGNKKGIFT-------RDRQPKSAAFLLKKRWTG 594 (604)
T ss_pred cCCceEEEEEEeeecc-CCCCCCcccCCCcceeEc-------CCCCChHHHHHHHHHhhc
Confidence 3346999999999992 222121 13668874 459999999999998753
No 18
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.17 E-value=9e-09 Score=102.87 Aligned_cols=237 Identities=19% Similarity=0.272 Sum_probs=138.1
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecC---CCCcHhHHhhhCCCCC-
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---LDLPQALEDEYGGWIN- 157 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h---~~~P~~l~~~~gg~~~- 157 (446)
++=+++||+.|+|++|+-+ | +.|...|..| ++.-.++..+++++||+.++++|- |.-|.--.. -..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~-P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNK-PAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCC-CccCCCC
Confidence 4457999999999999987 3 3344325555 777889999999999999999974 333432222 267887
Q ss_pred --hHhHHHHHHHHHHHHHHhcC---cceEEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 013298 158 --RMIVKDFTAYADVCFREFGD---RVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLA 232 (446)
Q Consensus 158 --~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~A 232 (446)
.+..++-.+|.+.+.+.+++ .++++.+=||.+.- .+ ||.|.. .-...+-.++.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~G----ml---wp~g~~--------------~~~~~~a~ll~a 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNG----ML---WPDGKP--------------SNWDNLAKLLNA 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGE----ST---BTTTCT--------------T-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccc----cc---CcCCCc--------------cCHHHHHHHHHH
Confidence 56778899999999888854 67788888997631 11 344432 224556677888
Q ss_pred HHHHHHHhhccc----cc---CCChHHHHHHhccCCCCCCHHHHHHhcCCCCeeeeecCCceeeecCCCCCccCCCCCcc
Q 013298 233 HASVARLVANPL----VY---GDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDNPSSLKQEHRDWSA 305 (446)
Q Consensus 233 h~~a~~~~~dpi----~~---G~yP~~~~~~~~~~lp~ft~~d~~~lkg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~ 305 (446)
-.+|++. .+|- ++ |.=...++..+. .+.......|.||++||.-. .
T Consensus 159 g~~AVr~-~~p~~kV~lH~~~~~~~~~~~~~f~---------~l~~~g~d~DviGlSyYP~w--~--------------- 211 (332)
T PF07745_consen 159 GIKAVRE-VDPNIKVMLHLANGGDNDLYRWFFD---------NLKAAGVDFDVIGLSYYPFW--H--------------- 211 (332)
T ss_dssp HHHHHHT-HSSTSEEEEEES-TTSHHHHHHHHH---------HHHHTTGG-SEEEEEE-STT--S---------------
T ss_pred HHHHHHh-cCCCCcEEEEECCCCchHHHHHHHH---------HHHhcCCCcceEEEecCCCC--c---------------
Confidence 8888887 3321 11 111111111110 11112246899999999631 0
Q ss_pred CcccccccccCCCCCCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCC---C---CCC-----------CchhHHHHHH
Q 013298 306 DTATMAFFEQDTAASSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPR---H---SSL-----------EDISRVKYLH 368 (446)
Q Consensus 306 d~~~~~~~~~~~g~~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~---~---~~~-----------~D~~Ri~yl~ 368 (446)
.....|...|+.+.+||++ ||+|+|+|++... + ..+ .-+-..+|
T Consensus 212 ----------------~~l~~l~~~l~~l~~ry~K-~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~-- 272 (332)
T PF07745_consen 212 ----------------GTLEDLKNNLNDLASRYGK-PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADF-- 272 (332)
T ss_dssp ----------------T-HHHHHHHHHHHHHHHT--EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHH--
T ss_pred ----------------chHHHHHHHHHHHHHHhCC-eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHH--
Confidence 0123589999999999976 7999999998762 0 000 11234444
Q ss_pred HHHHHHHHHHHc--CCceEEEEeecccc
Q 013298 369 AYIGSVLDAVRN--GSNTRGYFVWSFLD 394 (446)
Q Consensus 369 ~~l~~v~~Ai~d--Gv~V~GY~~WSL~D 394 (446)
|..+.+++.+ +-...|.|+|----
T Consensus 273 --l~~l~~~v~~~p~~~g~GvfYWeP~w 298 (332)
T PF07745_consen 273 --LRDLINAVKNVPNGGGLGVFYWEPAW 298 (332)
T ss_dssp --HHHHHHHHHTS--TTEEEEEEE-TT-
T ss_pred --HHHHHHHHHHhccCCeEEEEeecccc
Confidence 5555566653 56899999996543
No 19
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.11 E-value=1.7e-09 Score=108.43 Aligned_cols=294 Identities=17% Similarity=0.225 Sum_probs=172.1
Q ss_pred CCCCCeEeeeecchhccCCcCCCCCCCccchhhhccCCCCCCCcccchhhhchHHHHHHHHHcCCCEEEecccccccccC
Q 013298 29 FPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPN 108 (446)
Q Consensus 29 fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~ 108 (446)
...+|.+|+|.++.++++.. .|++- +.+.-+.-+..-..-|..++|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~-------------------------------~~~~~--~~~~Fn~~t~eN~~Kw~~~e~~ 52 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP-------------------------------RYREL--FAKHFNSVTPENEMKWGSIEPE 52 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH-------------------------------HHHHH--HHHH-SEEEESSTTSHHHHESB
T ss_pred HhccCCEEEEechhHcCCcH-------------------------------HHHHH--HHHhCCeeeeccccchhhhcCC
Confidence 46789999999999988630 11111 1122333344445889999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHCCCEEEE--EecCCCCcHhHHhhhCCCCChH---hHHHHHHHHHHHHHHhc--CcceE
Q 013298 109 GRGPVNPKGLQYYNNLINELISYGIQPHV--TLHHLDLPQALEDEYGGWINRM---IVKDFTAYADVCFREFG--DRVSY 181 (446)
Q Consensus 109 ~~g~~n~~~~~~y~~~i~~l~~~gi~p~v--tL~h~~~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~~~~--~~v~~ 181 (446)
+ |.+| ++..|++++.++++||++-- -+.|--.|.|+... .-+...+ ..+...+|.+.++.||+ .+|..
T Consensus 53 ~-g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~ 127 (320)
T PF00331_consen 53 P-GRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRIYA 127 (320)
T ss_dssp T-TBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESE
T ss_pred C-CccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccceEE
Confidence 8 9999 66688999999999999874 34466899999752 1223222 78899999999999999 48999
Q ss_pred EEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHH--HHHHHHHHHHHHHhhcc-cccCCChHH---HHH
Q 013298 182 WTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAV--HHLLLAHASVARLVANP-LVYGDYPKT---MKQ 255 (446)
Q Consensus 182 w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~--~nll~Ah~~a~~~~~dp-i~~G~yP~~---~~~ 255 (446)
|-+.|||..-.. .+-+.+. ...+.++ --+..|...|.++.-++ ++..+|-.. .+.
T Consensus 128 WDVvNE~i~~~~-------~~~~~r~------------~~~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~~~~~~k~~ 188 (320)
T PF00331_consen 128 WDVVNEAIDDDG-------NPGGLRD------------SPWYDALGPDYIADAFRAAREADPNAKLFYNDYNIESPAKRD 188 (320)
T ss_dssp EEEEES-B-TTS-------SSSSBCT------------SHHHHHHTTCHHHHHHHHHHHHHTTSEEEEEESSTTSTHHHH
T ss_pred EEEeeecccCCC-------ccccccC------------ChhhhcccHhHHHHHHHHHHHhCCCcEEEeccccccchHHHH
Confidence 999999863210 0011111 0112221 11122333333331122 223444211 111
Q ss_pred HhccCCCCCCHHHHHHhc--C-CCCeeeeecCCceeeecCCCCCccCCCCCccCcccccccccCCCCCCCCcHHHHHHHH
Q 013298 256 NAGSRLPAFTDRESQQIK--G-SADFIGVINYCMIYIKDNPSSLKQEHRDWSADTATMAFFEQDTAASSNEPSSLQIVLE 332 (446)
Q Consensus 256 ~~~~~lp~ft~~d~~~lk--g-~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~i~P~gl~~~L~ 332 (446)
.+- +-++.++ | ++|=||++-.- .. + ..|..+...|+
T Consensus 189 ~~~--------~lv~~l~~~gvpIdgIG~Q~H~----~~--------------------------~---~~~~~i~~~l~ 227 (320)
T PF00331_consen 189 AYL--------NLVKDLKARGVPIDGIGLQSHF----DA--------------------------G---YPPEQIWNALD 227 (320)
T ss_dssp HHH--------HHHHHHHHTTHCS-EEEEEEEE----ET--------------------------T---SSHHHHHHHHH
T ss_pred HHH--------HHHHHHHhCCCccceechhhcc----CC--------------------------C---CCHHHHHHHHH
Confidence 000 0011122 3 58888886321 10 0 11567999999
Q ss_pred HHHHHhCCCCEEEeeCCCCCCCCC--CCCchhHHHHHHHHHHHHHHHHHcCCceEEEEeecccccccccCCCc-CccceE
Q 013298 333 YFKRVYGNPPIYVHENGLATPRHS--SLEDISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFLDVFELLDGYA-SSYGLY 409 (446)
Q Consensus 333 ~~~~rY~~ppI~ITENG~~~~~~~--~~~D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW~~Gy~-~rfGL~ 409 (446)
++.+ .+. ||.|||.-+...... ...+..+.+++++++..+.+.-.. .|.|.+.|.+.|+.+|..... .+=+|+
T Consensus 228 ~~~~-~Gl-~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lf 303 (320)
T PF00331_consen 228 RFAS-LGL-PIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLF 303 (320)
T ss_dssp HHHT-TTS-EEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB
T ss_pred HHHH-cCC-ceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeE
Confidence 9865 464 799999999864310 112556777777777655554211 799999999999999986632 333565
Q ss_pred EEcCCCCCCccccchhHHHHHH
Q 013298 410 YVDRDDPDLKRYPKLSALWYSQ 431 (446)
Q Consensus 410 ~VD~~~~~~~R~pK~S~~~y~~ 431 (446)
. ..-+||++...+.+
T Consensus 304 d-------~~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 304 D-------EDYQPKPAYDAIVD 318 (320)
T ss_dssp --------TTSBB-HHHHHHHH
T ss_pred C-------CCcCCCHHHHHHHh
Confidence 2 34678999887765
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.06 E-value=1e-08 Score=108.69 Aligned_cols=282 Identities=20% Similarity=0.292 Sum_probs=138.6
Q ss_pred chHHHHHHHH-HcCCCEEEec--c--ccccccc-CCCC--CCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhh
Q 013298 80 KYKEDVKLMA-DTGLDAYRFS--I--SWSRLIP-NGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE 151 (446)
Q Consensus 80 ~~~~Di~l~~-~lG~~~~R~s--i--~W~ri~P-~~~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 151 (446)
.+.+.+..++ ++|++.+||- + +..-..+ ++.| .+| +...|+++|.|+++||+|+|.|.. .|.++...
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 3566666665 9999999985 2 2222222 2222 278 788999999999999999999975 67666421
Q ss_pred ------hCCCC-ChHhHHHHHHHHHHHHHHhcC-----cce--EEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCC
Q 013298 152 ------YGGWI-NRMIVKDFTAYADVCFREFGD-----RVS--YWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGN 217 (446)
Q Consensus 152 ------~gg~~-~~~~~~~f~~ya~~~~~~~~~-----~v~--~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~ 217 (446)
+.|+. .|+..+.+.++++.+++|+-+ .|. +|.+||||++..+ |..|
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~------------- 174 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDG------------- 174 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-------------
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCC-------------
Confidence 12232 245677888877777666543 465 4689999996321 1111
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhcccc-cCC------ChHHHHHHhccCCCCCCHHHHHHhc---CCCCeeeeecCCce
Q 013298 218 SSTEPYMAVHHLLLAHASVARLVANPLV-YGD------YPKTMKQNAGSRLPAFTDRESQQIK---GSADFIGVINYCMI 287 (446)
Q Consensus 218 ~~~~~~~~~~nll~Ah~~a~~~~~dpi~-~G~------yP~~~~~~~~~~lp~ft~~d~~~lk---g~~DFiGiNyY~~~ 287 (446)
...-...+..+.+++++. .+|-+ .|- ..+.+.. -++..+ -++|||+++.|...
T Consensus 175 ----~~~ey~~ly~~~~~~iK~-~~p~~~vGGp~~~~~~~~~~~~------------~l~~~~~~~~~~DfiS~H~y~~~ 237 (486)
T PF01229_consen 175 ----TPEEYFELYDATARAIKA-VDPELKVGGPAFAWAYDEWCED------------FLEFCKGNNCPLDFISFHSYGTD 237 (486)
T ss_dssp -----HHHHHHHHHHHHHHHHH-H-TTSEEEEEEEETT-THHHHH------------HHHHHHHCT---SEEEEEEE-BE
T ss_pred ----CHHHHHHHHHHHHHHHHH-hCCCCcccCccccccHHHHHHH------------HHHHHhcCCCCCCEEEEEecccc
Confidence 011245566667778887 44432 222 1111111 112222 36899999999865
Q ss_pred eeecCCCCCccCCCCCccCcccccccccCCCCCCCCcHHHHHHHHHHHH-HhCCCCEEEeeCCCCCCCCCCCCc-hhHHH
Q 013298 288 YIKDNPSSLKQEHRDWSADTATMAFFEQDTAASSNEPSSLQIVLEYFKR-VYGNPPIYVHENGLATPRHSSLED-ISRVK 365 (446)
Q Consensus 288 ~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~i~P~gl~~~L~~~~~-rY~~ppI~ITENG~~~~~~~~~~D-~~Ri~ 365 (446)
....... .. .. .... . . .+.| .+....+.+.+ .+++.|+++||-+.........+| ..+..
T Consensus 238 ~~~~~~~-------~~-~~-~~~~-~--~----~~~~-~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA 300 (486)
T PF01229_consen 238 SAEDINE-------NM-YE-RIED-S--R----RLFP-ELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAA 300 (486)
T ss_dssp SESE-SS--------E-EE-EB---H--H----HHHH-HHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHH
T ss_pred cccccch-------hH-Hh-hhhh-H--H----HHHH-HHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchh
Confidence 3221110 00 00 0000 0 0 0111 12223222222 234458999997766543233444 44555
Q ss_pred HHHHHHHHHHHHHH-cCCceEEEEeecccccccccCC----CcCccceEEEcCCCCCCccccchhHHHHHHHH
Q 013298 366 YLHAYIGSVLDAVR-NGSNTRGYFVWSFLDVFELLDG----YASSYGLYYVDRDDPDLKRYPKLSALWYSQFL 433 (446)
Q Consensus 366 yl~~~l~~v~~Ai~-dGv~V~GY~~WSL~Dn~EW~~G----y~~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii 433 (446)
|+... .++ +|..+-++.+|++.|.||=..- +..-|||+..+ .++|+|.+.|+-+-
T Consensus 301 ~i~k~------lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~-------gI~KPa~~A~~~L~ 360 (486)
T PF01229_consen 301 YIAKN------LLSNDGAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL-------GIPKPAYYAFQLLN 360 (486)
T ss_dssp HHHH-------HHHHGGGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECC-------CEE-HHHHHHHHHT
T ss_pred hHHHH------HHHhhhhhhhhhhccchhhhhhccCCCCCceecchhhhhcc-------CCCchHHHHHHHHH
Confidence 54332 333 4666778999999999983221 45568999754 78999988887543
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=6.2e-08 Score=94.39 Aligned_cols=264 Identities=18% Similarity=0.205 Sum_probs=156.0
Q ss_pred ecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEE-Ee-cCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHh
Q 013298 98 FSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV-TL-HHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREF 175 (446)
Q Consensus 98 ~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-tL-~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~ 175 (446)
--+-|.-|+|+. |.+| ++.-|.+.+-++++||..-- || .|--.|.|+.. .-+..+...+...++...|+.||
T Consensus 65 nemKwe~i~p~~-G~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 65 NEMKWEAIEPER-GRFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccccCCC-CccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 345799999987 9999 45577999999999998643 22 45578999964 34677889999999999999999
Q ss_pred cCcceEEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcc-cccCCChH---
Q 013298 176 GDRVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLVANP-LVYGDYPK--- 251 (446)
Q Consensus 176 ~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~~~dp-i~~G~yP~--- 251 (446)
++.|.-|-+.|||-- ...++-...|..+.. +++....+.+. |.++.-+. ++..+|..
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~------------gpd~I~~aF~~------AreadP~AkL~~NDY~ie~~ 199 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDGGT------------GPDYIKLAFHI------AREADPDAKLVINDYSIEGN 199 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhccCC------------ccHHHHHHHHH------HHhhCCCceEEeecccccCC
Confidence 999999999999853 221222222222111 12323333222 22221222 23556631
Q ss_pred -HHHHHhccCCCCCCHHHHHHh--cCC-CCeeeeecCCceeeecCCCCCccCCCCCccCcccccccccCCCCCCCCcHHH
Q 013298 252 -TMKQNAGSRLPAFTDRESQQI--KGS-ADFIGVINYCMIYIKDNPSSLKQEHRDWSADTATMAFFEQDTAASSNEPSSL 327 (446)
Q Consensus 252 -~~~~~~~~~lp~ft~~d~~~l--kg~-~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~i~P~gl 327 (446)
.-+..+.. =++.+ +|. +|=||++.= .+- .+ ..++-.
T Consensus 200 ~~kr~~~~n--------lI~~LkekG~pIDgiG~QsH----~~~----------~~------------------~~~~~~ 239 (345)
T COG3693 200 PAKRNYVLN--------LIEELKEKGAPIDGIGIQSH----FSG----------DG------------------PSIEKM 239 (345)
T ss_pred hHHHHHHHH--------HHHHHHHCCCCccceeeeee----ecC----------CC------------------CCHHHH
Confidence 11111100 01222 354 899998732 110 01 011224
Q ss_pred HHHHHHHHHHhCCCCEEEeeCCCCCCCCCCCCchhHHHHHHHHHHHHHHH--HHcCCceEEEEeecccccccccCCCcCc
Q 013298 328 QIVLEYFKRVYGNPPIYVHENGLATPRHSSLEDISRVKYLHAYIGSVLDA--VRNGSNTRGYFVWSFLDVFELLDGYASS 405 (446)
Q Consensus 328 ~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~D~~Ri~yl~~~l~~v~~A--i~dGv~V~GY~~WSL~Dn~EW~~Gy~~r 405 (446)
+..+..+... +. ||+|||--|.... ...+..|-.-.+....+-.-. ......|.+.+.|.++|+++|..|..++
T Consensus 240 ~~a~~~~~k~-Gl-~i~VTELD~~~~~--P~~~~p~~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~ 315 (345)
T COG3693 240 RAALLKFSKL-GL-PIYVTELDMSDYT--PDSGAPRLYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPR 315 (345)
T ss_pred HHHHHHHhhc-CC-CceEEEeeeeccC--CCCccHHHHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCccC
Confidence 4444444434 65 6999999998742 112223322222211111111 2245569999999999999999998888
Q ss_pred cce---EEEcCCCCCCccccchhHHHHHHHHhc
Q 013298 406 YGL---YYVDRDDPDLKRYPKLSALWYSQFLKG 435 (446)
Q Consensus 406 fGL---~~VD~~~~~~~R~pK~S~~~y~~ii~~ 435 (446)
++= +=+| -.=+||+..++..++.+.
T Consensus 316 ~~~~rPl~~D-----~n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 316 RDGLRPLLFD-----DNYQPKPAYKAIAEVLAP 343 (345)
T ss_pred cCCCCCcccC-----CCCCcchHHHHHHHHhcC
Confidence 851 1122 346789999998877654
No 22
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=1.8e-06 Score=83.17 Aligned_cols=274 Identities=19% Similarity=0.259 Sum_probs=158.3
Q ss_pred CCCCCCCCCeEeeeecc-hhccCCcCCCCCCCccchhhhccCCCCC-CCcccchhhhchHHH-HHHHHHcCCCEEEeccc
Q 013298 25 TKNDFPPGFIFGSGTSA-YQVEGAANEDGRTPSIWDTFAHAGNVPG-TGDVACDEYHKYKED-VKLMADTGLDAYRFSIS 101 (446)
Q Consensus 25 ~~~~fp~~FlwG~atsa-~Q~EG~~~~~g~~~s~wd~~~~~~~~~~-~~~~a~d~y~~~~~D-i~l~~~lG~~~~R~si~ 101 (446)
+-...|++|+-|+-.|. .|+|-. + ++..+ ++- ++| ++.+|+.|+|.+|+-|-
T Consensus 31 ~v~~~~~dFikGaDis~l~~lE~~---G-------------vkf~d~ng~---------~qD~~~iLK~~GvNyvRlRvw 85 (403)
T COG3867 31 PVENSPNDFIKGADISSLIELENS---G-------------VKFFDTNGV---------RQDALQILKNHGVNYVRLRVW 85 (403)
T ss_pred eccCChHHhhccccHHHHHHHHHc---C-------------ceEEccCCh---------HHHHHHHHHHcCcCeEEEEEe
Confidence 34468999999987654 566632 0 12222 222 444 79999999999999772
Q ss_pred ccccccCCC---CCCChhhHHHHHHHHHHHHHCCCEEEEEec---CCCCcHhHHhhhCCCCC---hHhHHHHHHHHHHHH
Q 013298 102 WSRLIPNGR---GPVNPKGLQYYNNLINELISYGIQPHVTLH---HLDLPQALEDEYGGWIN---RMIVKDFTAYADVCF 172 (446)
Q Consensus 102 W~ri~P~~~---g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---h~~~P~~l~~~~gg~~~---~~~~~~f~~ya~~~~ 172 (446)
=.----++. |..| .++.--++-..++..||+++++.| ||.-|..-. +--.|.+ +....+.-+|.+.+.
T Consensus 86 ndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~-kPkaW~~l~fe~lk~avy~yTk~~l 162 (403)
T COG3867 86 NDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK-KPKAWENLNFEQLKKAVYSYTKYVL 162 (403)
T ss_pred cCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcC-CcHHhhhcCHHHHHHHHHHHHHHHH
Confidence 222222221 2233 255566788889999999999986 455565432 2355654 334456667888887
Q ss_pred HHhcC---cceEEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcccc----
Q 013298 173 REFGD---RVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLVANPLV---- 245 (446)
Q Consensus 173 ~~~~~---~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~~~dpi~---- 245 (446)
..+.+ .+.+-.+=||-+- |.+ ||-|... -..-+-.|+.+-.+|++. .+|-+
T Consensus 163 ~~m~~eGi~pdmVQVGNEtn~----gfl---wp~Ge~~--------------~f~k~a~L~n~g~~avre-v~p~ikv~l 220 (403)
T COG3867 163 TTMKKEGILPDMVQVGNETNG----GFL---WPDGEGR--------------NFDKMAALLNAGIRAVRE-VSPTIKVAL 220 (403)
T ss_pred HHHHHcCCCccceEeccccCC----cee---ccCCCCc--------------ChHHHHHHHHHHhhhhhh-cCCCceEEE
Confidence 77754 4555567799652 222 5655432 134455677777888887 44421
Q ss_pred ---cCCChHHHHHHhccCCCCCCHHHHHHhcCCCCeeeeecCCceeeecCCCCCccCCCCCccCcccccccccCCCCCCC
Q 013298 246 ---YGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDNPSSLKQEHRDWSADTATMAFFEQDTAASSN 322 (446)
Q Consensus 246 ---~G~yP~~~~~~~~~~lp~ft~~d~~~lkg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~i 322 (446)
.|.-+...+.. -+++-.-.-..|.||.+||+-. .. . .
T Consensus 221 Hla~g~~n~~y~~~---------fd~ltk~nvdfDVig~SyYpyW--hg---------------t-l------------- 260 (403)
T COG3867 221 HLAEGENNSLYRWI---------FDELTKRNVDFDVIGSSYYPYW--HG---------------T-L------------- 260 (403)
T ss_pred EecCCCCCchhhHH---------HHHHHHcCCCceEEeeeccccc--cC---------------c-H-------------
Confidence 12211111100 0111111235688999999632 10 0 0
Q ss_pred CcHHHHHHHHHHHHHhCCCCEEEeeCCCCCC--C--------C--C-----CCCchhHHHHHHHHHHHHHHHHHcCCceE
Q 013298 323 EPSSLQIVLEYFKRVYGNPPIYVHENGLATP--R--------H--S-----SLEDISRVKYLHAYIGSVLDAVRNGSNTR 385 (446)
Q Consensus 323 ~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~--~--------~--~-----~~~D~~Ri~yl~~~l~~v~~Ai~dGv~V~ 385 (446)
..|...|..+.+||++ .+||.|.+..-. + . + .+.=+-+..++++-++.|... -+.+=.
T Consensus 261 --~nL~~nl~dia~rY~K-~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~Gl 335 (403)
T COG3867 261 --NNLTTNLNDIASRYHK-DVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGL 335 (403)
T ss_pred --HHHHhHHHHHHHHhcC-eEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCce
Confidence 1377789999999986 599999887321 0 0 0 111134566777766655433 244567
Q ss_pred EEEeeccc
Q 013298 386 GYFVWSFL 393 (446)
Q Consensus 386 GY~~WSL~ 393 (446)
|.|+|---
T Consensus 336 GvFYWEp~ 343 (403)
T COG3867 336 GVFYWEPA 343 (403)
T ss_pred EEEEeccc
Confidence 99999743
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.67 E-value=1.2e-06 Score=86.90 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=63.1
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhC---
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYG--- 153 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~g--- 153 (446)
....++.|+++||+||+|++|++. ...+ .++++.|-+.||-++.-+.....-.|-. .+
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h----------~p~~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH----------YPPS-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT----------S--S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc----------ccCc-------HHHHHHHhhcCCEEEEeccccccCcccc--CCccc
Confidence 457889999999999999999962 1122 2677889999999998764321111211 01
Q ss_pred -CCCChHhHHHHHHHHHHHHHHhcC--cceEEEecCCC
Q 013298 154 -GWINRMIVKDFTAYADVCFREFGD--RVSYWTTVNEP 188 (446)
Q Consensus 154 -g~~~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp 188 (446)
--.+++..+.+.+-++.+++++.+ .|-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 013677888888888999999977 57789999997
No 24
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.3e-07 Score=101.89 Aligned_cols=120 Identities=20% Similarity=0.335 Sum_probs=91.6
Q ss_pred hchHHHHHHHHHcCCCEEEecc-cccccccCCCCCCChhhHHHHHHH-HHHHHHCCCEEEEEe-cCCCCcHhHHhhh---
Q 013298 79 HKYKEDVKLMADTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHLDLPQALEDEY--- 152 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si-~W~ri~P~~~g~~n~~~~~~y~~~-i~~l~~~gi~p~vtL-~h~~~P~~l~~~~--- 152 (446)
.-|++|++.||++|+|++|.++ +|++++|+. |.+|. .+.|.. |+.+.+.||.+|+.- .....|.|+..++
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G~fdf---~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-GKFDF---TWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccc-cccCc---ccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 4478999999999999999955 999999998 99994 477777 999999999999988 7788999998642
Q ss_pred ------------CCCCChHhH-HHHHHHHHH----HHHH-hcC--cceEEEecCCCce-eeeccccccCCC
Q 013298 153 ------------GGWINRMIV-KDFTAYADV----CFRE-FGD--RVSYWTTVNEPNG-FAMVGYDFGIAP 202 (446)
Q Consensus 153 ------------gg~~~~~~~-~~f~~ya~~----~~~~-~~~--~v~~w~t~NEp~~-~~~~gy~~g~~~ 202 (446)
|+|.+-+.. ..+..|++. +.+| |++ .|..|.+-||-.. .++..|....|+
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 666443322 235555554 7788 766 4777999999766 555555544444
No 25
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=1.7e-05 Score=82.37 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=84.7
Q ss_pred chhhhch-----HHHHHHHHHcCCCEEEecccccccccCC--C-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcH
Q 013298 75 CDEYHKY-----KEDVKLMADTGLDAYRFSISWSRLIPNG--R-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQ 146 (446)
Q Consensus 75 ~d~y~~~-----~~Di~l~~~lG~~~~R~si~W~ri~P~~--~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 146 (446)
.-...+| ++|+..||+.|+|++|+.+.|-.+.+.. . ...+...+.+.+++|+.+++.||.+++.||+..-+.
T Consensus 64 ~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~ 143 (407)
T COG2730 64 GLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGN 143 (407)
T ss_pred ccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCC
Confidence 3345556 8999999999999999999866555532 1 223244566899999999999999999999876333
Q ss_pred hHHhhh---CCCC-ChHhHHHHHHHHHHHHHHhcC--cceEEEecCCCce
Q 013298 147 ALEDEY---GGWI-NRMIVKDFTAYADVCFREFGD--RVSYWTTVNEPNG 190 (446)
Q Consensus 147 ~l~~~~---gg~~-~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~ 190 (446)
--.+.. +.+. ..++++++.+-.+.++.+|++ .|--..++|||+.
T Consensus 144 ~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 222211 2222 345679999999999999987 3444678999984
No 26
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.05 E-value=0.00012 Score=70.40 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEeeCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCceEEEEeeccccccc
Q 013298 326 SLQIVLEYFKRVYGNPPIYVHENGLATPRHSSLEDISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFLDVFE 397 (446)
Q Consensus 326 gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~E 397 (446)
++...|+.++++|++ ||+|||.|+... .....++...+|+++.+..+.+. -.|.+|++.+.++..+
T Consensus 152 ~~~~~i~~~~~~~~k-PIWITEf~~~~~-~~~~~~~~~~~fl~~~~~~ld~~----~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 152 DFKDYIDDLHNRYGK-PIWITEFGCWNG-GSQGSDEQQASFLRQALPWLDSQ----PYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHhCC-CEEEEeecccCC-CCCCCHHHHHHHHHHHHHHHhcC----CCeeEEEecccccccC
Confidence 588899999999995 799999998642 12445667777777666655443 5799999999555543
No 27
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.75 E-value=0.00016 Score=72.56 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=76.0
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecC--------CCCcHhHHh
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH--------LDLPQALED 150 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h--------~~~P~~l~~ 150 (446)
..|++-++.||++|+|++-+-|.|.-.||++ |.+|.++..=.+.+|+.++++||.+|+-.-- -++|.||..
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 3478889999999999999999999999998 9999998888899999999999998876421 358999987
Q ss_pred hhCCC---CChHhHHHHHHHHHHHHHHhcC-------cceEEEecCCC
Q 013298 151 EYGGW---INRMIVKDFTAYADVCFREFGD-------RVSYWTTVNEP 188 (446)
Q Consensus 151 ~~gg~---~~~~~~~~f~~ya~~~~~~~~~-------~v~~w~t~NEp 188 (446)
+.+.. .++...++-.+|.+.+++...+ -|..-.+=||.
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEy 150 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEY 150 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhh
Confidence 53333 2566777777777777766643 45566677773
No 28
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.75 E-value=0.0009 Score=77.04 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=62.4
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe---cC-CCCcHhHHhhh
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL---HH-LDLPQALEDEY 152 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL---~h-~~~P~~l~~~~ 152 (446)
....+++|+++||++|+|++|+|. .|.. ..+.+.|-+.||-++--. .| |.....+.
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sH-----yP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~--- 412 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAH-----YPND------------PRFYELCDIYGLFVMAETDVESHGFANVGDIS--- 412 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----CCCC------------HHHHHHHHHCCCEEEECCcccccCcccccccc---
Confidence 357789999999999999999972 3332 156788999999887753 12 21110000
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhcCc--ceEEEecCCC
Q 013298 153 GGWINRMIVKDFTAYADVCFREFGDR--VSYWTTVNEP 188 (446)
Q Consensus 153 gg~~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp 188 (446)
-...++...+.|.+=++.+++|.+++ |-.|..-||.
T Consensus 413 ~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 413 RITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 00123455677777788999999874 6679999995
No 29
>PLN03059 beta-galactosidase; Provisional
Probab=97.37 E-value=0.0023 Score=70.93 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=88.7
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEec--------CCCCcHhHHh
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HLDLPQALED 150 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------h~~~P~~l~~ 150 (446)
..|++=++.||++|+|++-.=|.|.--||++ |.+|.++..=..++|+.+.+.||-+|+-.- .-++|.||..
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 4578889999999999999999999999998 999999988899999999999999888652 3489999975
Q ss_pred hhCCC----CChHhHHHHHHHHHHHHHHhc---------CcceEEEecCCCc
Q 013298 151 EYGGW----INRMIVKDFTAYADVCFREFG---------DRVSYWTTVNEPN 189 (446)
Q Consensus 151 ~~gg~----~~~~~~~~f~~ya~~~~~~~~---------~~v~~w~t~NEp~ 189 (446)
. .|- .++.+.++-.+|.+.+++..+ +-|-...+=||-.
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 3 332 267778888888888888774 2355566778843
No 30
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=97.28 E-value=0.016 Score=66.98 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=63.2
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEec---CCCCcHhHHhhhC
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HLDLPQALEDEYG 153 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---h~~~P~~l~~~~g 153 (446)
....+++||++||++|+|++|+| -.|. + ..+.+.|-+.||-++--.. |.-.|. . .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~-----~-------p~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPN-----H-------PLWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCC-----C-------HHHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 45678999999999999999996 1222 1 1456889999998887642 211110 0 0
Q ss_pred CCCChHhHHHHHHHHHHHHHHhcCc--ceEEEecCCC
Q 013298 154 GWINRMIVKDFTAYADVCFREFGDR--VSYWTTVNEP 188 (446)
Q Consensus 154 g~~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp 188 (446)
...+++..+.+.+=++.+++|.+++ |-.|..-||+
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~ 463 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNES 463 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCC
Confidence 1134666777888888899999874 6789999995
No 31
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.19 E-value=0.00058 Score=69.55 Aligned_cols=105 Identities=15% Similarity=0.344 Sum_probs=80.2
Q ss_pred hhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe-cC-----------CCCc
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------LDLP 145 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~h-----------~~~P 145 (446)
+.-.+..++.||++||..+-+.+-|.-+|+.+.+++| |+.|+++++.+++.|++..+.| +| ..+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4477999999999999999999999999999768999 7779999999999999999877 34 4789
Q ss_pred HhHHhh-----------hCC--------CCChHhHHHHHHHHHHHHHHhcCcceEEEecCCC
Q 013298 146 QALEDE-----------YGG--------WINRMIVKDFTAYADVCFREFGDRVSYWTTVNEP 188 (446)
Q Consensus 146 ~~l~~~-----------~gg--------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp 188 (446)
.|+.+. .|. |....+++.+.+|-+...++|.+.. -|+-|.
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I 150 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEI 150 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEE
Confidence 999742 122 3344449999999999999997764 566664
No 32
>PLN02803 beta-amylase
Probab=97.10 E-value=0.0022 Score=67.06 Aligned_cols=106 Identities=17% Similarity=0.318 Sum_probs=83.3
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe-cC-----------CCCcH
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------LDLPQ 146 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~h-----------~~~P~ 146 (446)
.-.+..++.+|.+||..+-+.+-|--+|+++.+.|| |..|+++++.+++.|++..+.| +| ..+|.
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 447889999999999999999999999998779999 7779999999999999998887 44 36999
Q ss_pred hHHhh-----------hCCC----------------CChHhHHHHHHHHHHHHHHhcCcceEEEecCCCc
Q 013298 147 ALEDE-----------YGGW----------------INRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (446)
Q Consensus 147 ~l~~~-----------~gg~----------------~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 189 (446)
|+.+. ..|- ..+.-++.|.+|-+...++|.+... -|+.|..
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~ 251 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQ 251 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 98752 0111 1233457788888888888877553 4677744
No 33
>PLN02161 beta-amylase
Probab=96.99 E-value=0.0031 Score=65.58 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=86.2
Q ss_pred chhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe-cCC-----------
Q 013298 75 CDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HHL----------- 142 (446)
Q Consensus 75 ~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~h~----------- 142 (446)
..+..-.+..++.+|.+||..+-+.+-|--+|+++.+.|| |..|+++++.+++.|++..+.| +|=
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4567778899999999999999999999999998779999 7779999999999999998888 452
Q ss_pred CCcHhHHhh-----------hCCCC----------------ChHhHHHHHHHHHHHHHHhcCcceEEEecCCCc
Q 013298 143 DLPQALEDE-----------YGGWI----------------NRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (446)
Q Consensus 143 ~~P~~l~~~-----------~gg~~----------------~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 189 (446)
.+|.|+.+. ..|-. .+.-++.|.+|-+...++|.+... -|+.|..
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~ 261 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEIS 261 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 599998752 11211 233457888888888888877543 3666643
No 34
>PLN00197 beta-amylase; Provisional
Probab=96.96 E-value=0.0033 Score=65.92 Aligned_cols=106 Identities=18% Similarity=0.318 Sum_probs=83.6
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe-cC-----------CCCcH
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------LDLPQ 146 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~h-----------~~~P~ 146 (446)
.-.+..++.+|.+||..+-+.+-|.-+|+++.+.|| |..|+++++.+++.|++..+.| +| ..+|.
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 347889999999999999999999999998779999 6779999999999999998888 44 36999
Q ss_pred hHHhh-----------hCCCC----------------ChHhHHHHHHHHHHHHHHhcCcceEEEecCCCc
Q 013298 147 ALEDE-----------YGGWI----------------NRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (446)
Q Consensus 147 ~l~~~-----------~gg~~----------------~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 189 (446)
|+.+. ..|-. .+.-++.|.+|-+...++|.+... .|+.|..
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~ 271 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQ 271 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEE
Confidence 98752 01211 233368888888888888877554 3666644
No 35
>PLN02801 beta-amylase
Probab=96.82 E-value=0.007 Score=63.07 Aligned_cols=98 Identities=18% Similarity=0.365 Sum_probs=78.8
Q ss_pred hhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe-cC-----------CCCc
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------LDLP 145 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~h-----------~~~P 145 (446)
-.-.+..++.+|.+||..+-+.+-|.-+|+++.+++| |..|+++++.+++.|++..+.| +| ..+|
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 112 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIP 112 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 3447889999999999999999999999998779999 7779999999999999988887 34 3699
Q ss_pred HhHHhh-----------hCCC----------------CChHhHHHHHHHHHHHHHHhcCc
Q 013298 146 QALEDE-----------YGGW----------------INRMIVKDFTAYADVCFREFGDR 178 (446)
Q Consensus 146 ~~l~~~-----------~gg~----------------~~~~~~~~f~~ya~~~~~~~~~~ 178 (446)
.|+.+. ..|- ..+.-++.+.+|-+...++|.+.
T Consensus 113 ~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~ 172 (517)
T PLN02801 113 QWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADF 172 (517)
T ss_pred HHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 998752 1121 12334688888888888888764
No 36
>PLN02905 beta-amylase
Probab=96.56 E-value=0.015 Score=61.84 Aligned_cols=100 Identities=14% Similarity=0.265 Sum_probs=80.1
Q ss_pred hhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe-cC-----------CC
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------LD 143 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~h-----------~~ 143 (446)
.+..-.+..++.||.+||..+-+.+-|--+|+++.+.|| |..|+++++.+++.|++..+.| +| ..
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IP 359 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIP 359 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 466678899999999999999999999999998779999 7779999999999999998888 44 36
Q ss_pred CcHhHHhh-----------hCCCC----------------ChHhHHHHHHHHHHHHHHhcCc
Q 013298 144 LPQALEDE-----------YGGWI----------------NRMIVKDFTAYADVCFREFGDR 178 (446)
Q Consensus 144 ~P~~l~~~-----------~gg~~----------------~~~~~~~f~~ya~~~~~~~~~~ 178 (446)
+|.|+.+. ..|-. .+.-++.|.+|-+...++|.+.
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998752 01111 2334578888888777777663
No 37
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.55 E-value=0.015 Score=57.57 Aligned_cols=103 Identities=15% Similarity=0.287 Sum_probs=64.3
Q ss_pred hHHHHHHHHHcCCCEEEecc--ccccc-----ccCC-----C------CCCChhhHHHHHHHHHHHHHCCCEEEEEecCC
Q 013298 81 YKEDVKLMADTGLDAYRFSI--SWSRL-----IPNG-----R------GPVNPKGLQYYNNLINELISYGIQPHVTLHHL 142 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si--~W~ri-----~P~~-----~------g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~ 142 (446)
++.=++..|+-|+|.+|+.+ .|... .|.. . ..+|++-+++.+++|+.|.+.||.|-+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34447889999999999998 45433 1111 0 1379999999999999999999999877665
Q ss_pred CCcHhHHhhhCCCC---ChHhHHHHHHHHHHHHHHhcCc-ceEEEecCCC
Q 013298 143 DLPQALEDEYGGWI---NRMIVKDFTAYADVCFREFGDR-VSYWTTVNEP 188 (446)
Q Consensus 143 ~~P~~l~~~~gg~~---~~~~~~~f~~ya~~~~~~~~~~-v~~w~t~NEp 188 (446)
+.|. .+ +.|- +.-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 1121 11 4453 2334778889999999999998 4779998983
No 38
>PLN02705 beta-amylase
Probab=96.45 E-value=0.0077 Score=63.80 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=78.7
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe-cC-----------CCC
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-HH-----------LDL 144 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~h-----------~~~ 144 (446)
+-.-.+..++.||.+||..+-+.+-|..+|+++.+.|| |..|+++++.+++.|++..+.| +| ..+
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 34557889999999999999999999999998779999 7779999999999999988887 44 369
Q ss_pred cHhHHhh-----------hCCCC----------------ChHhHHHHHHHHHHHHHHhcCc
Q 013298 145 PQALEDE-----------YGGWI----------------NRMIVKDFTAYADVCFREFGDR 178 (446)
Q Consensus 145 P~~l~~~-----------~gg~~----------------~~~~~~~f~~ya~~~~~~~~~~ 178 (446)
|.|+.+. ..|-. .+.-++.|.+|-+...++|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998752 01111 2334578888888887777663
No 39
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=96.42 E-value=0.053 Score=53.69 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=34.7
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEec
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
+-.+.|+.+||+||+|++|+= .|-|.. =.++-+..|.++||=++++|.
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY----~vdp~~----------nHd~CM~~~~~aGIYvi~Dl~ 100 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVY----SVDPSK----------NHDECMSAFADAGIYVILDLN 100 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-------TTS------------HHHHHHHHHTT-EEEEES-
T ss_pred HHHHHhHHHHHHcCCCEEEEE----EeCCCC----------CHHHHHHHHHhCCCEEEEecC
Confidence 367999999999999999974 233332 267889999999999999994
No 40
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.24 E-value=0.013 Score=59.70 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=53.2
Q ss_pred HHcCCCEEEecc---c------------ccccc--cCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhh
Q 013298 89 ADTGLDAYRFSI---S------------WSRLI--PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE 151 (446)
Q Consensus 89 ~~lG~~~~R~si---~------------W~ri~--P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 151 (446)
+.+|++.+|+.| + |.|.+ +...|.+|..+=+-=+-++.+++++|+..++ ++-+.-|.|....
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 348888888877 2 33332 1223666644323344588999999999876 6666777777542
Q ss_pred h---CC-----CCChHhHHHHHHHHHHHHHHhcC---cceEEEecCCCc
Q 013298 152 Y---GG-----WINRMIVKDFTAYADVCFREFGD---RVSYWTTVNEPN 189 (446)
Q Consensus 152 ~---gg-----~~~~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~ 189 (446)
. |+ =+.++..++|++|...|+++|.. .+++-.++|||+
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~ 184 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQ 184 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TT
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCC
Confidence 1 11 14577899999999999999943 688899999998
No 41
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.10 E-value=0.036 Score=50.31 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=68.5
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccc-----cCCC--CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhh
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLI-----PNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE 151 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~-----P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 151 (446)
.+|+++++.|+++|++++=+. |+... |... +.+.....+....+++++.+.||++++.|+.. |.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~--~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD--PDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC--chhhhc-
Confidence 578999999999999998533 44432 2210 11222345788899999999999999999853 555542
Q ss_pred hCCCCChH-hHHHHHHHHHHHHHHhcCc--ceEEEecCCCce
Q 013298 152 YGGWINRM-IVKDFTAYADVCFREFGDR--VSYWTTVNEPNG 190 (446)
Q Consensus 152 ~gg~~~~~-~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~ 190 (446)
.+.+ -++.=..-++.+.++||.+ +.-|.+-.|+.-
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~ 132 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDD 132 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCC
Confidence 2221 2333345677788888874 445888888653
No 42
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=95.51 E-value=0.5 Score=48.30 Aligned_cols=268 Identities=14% Similarity=0.200 Sum_probs=146.2
Q ss_pred HHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCC-C-hHhHHHHH
Q 013298 88 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWI-N-RMIVKDFT 165 (446)
Q Consensus 88 ~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~-~-~~~~~~f~ 165 (446)
-+|+|++-+|.---|.-++... -++ +.++++++|.+.+.|+.-+.+-.||..+.-....+.+=. . ....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~--~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL--FYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeeccc--cCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 4688999999888888333332 456 678999999999999444444466666554432122222 2 24779999
Q ss_pred HHHHHHHHHhcCc-ceE--EEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 013298 166 AYADVCFREFGDR-VSY--WTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLVAN 242 (446)
Q Consensus 166 ~ya~~~~~~~~~~-v~~--w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~a~~~~~d 242 (446)
.+++-|+.++|-+ |.- ...+||||..+ + .+.|.. +....|| . ..
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a--------------d------------~~eyfk-~y~~~a~-----~-~~ 135 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLA--------------D------------KQEYFK-LYDATAR-----Q-RA 135 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCccc--------------c------------hHHHHH-HHHhhhh-----c-cC
Confidence 9999999999953 333 46889999641 1 011211 1122222 1 23
Q ss_pred ccc-cC--CChHHHHHHhccCCCCCCHHHHHHhcCCCCeeeeecCCceeeecCCCCCccCCCCCccCcccccccccCCCC
Q 013298 243 PLV-YG--DYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDNPSSLKQEHRDWSADTATMAFFEQDTAA 319 (446)
Q Consensus 243 pi~-~G--~yP~~~~~~~~~~lp~ft~~d~~~lkg~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~ 319 (446)
|-+ .| .-|+.... | ......+||+..+-|+..-+.....+. ...+-+...+..
T Consensus 136 p~i~vg~~w~~e~l~~--------~-----~k~~d~idfvt~~a~~~~av~~~~~~~-~~~~l~~~~~~l---------- 191 (428)
T COG3664 136 PSIQVGGSWNTERLHE--------F-----LKKADEIDFVTELANSVDAVDFSTPGA-EEVKLSELKRTL---------- 191 (428)
T ss_pred cceeeccccCcHHHhh--------h-----hhccCcccceeecccccccccccCCCc-hhhhhhhhhhhh----------
Confidence 322 23 22211111 1 012256899999999876543322100 000000000000
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEeeCCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHcCCceEEEEeecccccccc
Q 013298 320 SSNEPSSLQIVLEYFKRVYGNPPIYVHENGLATPRHSSLE-DISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFLDVFEL 398 (446)
Q Consensus 320 ~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~-D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~Dn~EW 398 (446)
-.-.++.+.|.... . +.|+++||=-..+.+....+ +-.|..||.+ ...+.|.+|.+..+|.-.|-+|=
T Consensus 192 --~~~r~~~d~i~~~~--~-~~pl~~~~wntlt~~~~~~n~sy~raa~i~~------~Lr~~g~~v~a~~yW~~sdl~e~ 260 (428)
T COG3664 192 --EDLRGLKDLIQHHS--L-GLPLLLTNWNTLTGPREPTNGSYVRAAYIMR------LLREAGSPVDAFGYWTNSDLHEE 260 (428)
T ss_pred --hHHHHHHHHHHhcc--C-CCcceeecccccCCCccccCceeehHHHHHH------HHHhcCChhhhhhhhhccccccc
Confidence 01123444443322 2 34799999777665422233 3345455422 23346999999999999998853
Q ss_pred c----CCCcCccceEEEcCCCCCCccccchhHHHHHHH
Q 013298 399 L----DGYASSYGLYYVDRDDPDLKRYPKLSALWYSQF 432 (446)
Q Consensus 399 ~----~Gy~~rfGL~~VD~~~~~~~R~pK~S~~~y~~i 432 (446)
. .++-.-|||++ +.. .+|-.=-++..|.++
T Consensus 261 ~g~~~~~~~~gfel~~--~~~--~rrpa~~~~l~~n~L 294 (428)
T COG3664 261 HGPPEAPFVGGFELFA--PYG--GRRPAWMAALFFNRL 294 (428)
T ss_pred CCCcccccccceeeec--ccc--cchhHHHHHHHHHHH
Confidence 3 23666778874 222 344444667777776
No 43
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.14 E-value=0.15 Score=54.92 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=86.8
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe--------cCCCCcHhHHh
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--------HHLDLPQALED 150 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--------~h~~~P~~l~~ 150 (446)
..|++=|+.+|++|+|++-.=+.|.--||.+ |++|.+|.-=..++|..+.++|+=+++-+ .+-++|.||..
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCCC-CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 4478889999999999999999999999998 89999887777788999999998877654 35688988876
Q ss_pred hhCCC---CChHhHHHHHHHHHHHHHHhc-------CcceEEEecCCCc
Q 013298 151 EYGGW---INRMIVKDFTAYADVCFREFG-------DRVSYWTTVNEPN 189 (446)
Q Consensus 151 ~~gg~---~~~~~~~~f~~ya~~~~~~~~-------~~v~~w~t~NEp~ 189 (446)
.-|.- .|+.+..++.+|.+.++...+ +-|-.-.+=||-.
T Consensus 128 ~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 VPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred CCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 42322 378888999999999887432 3355556778754
No 44
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=95.01 E-value=3.5 Score=40.06 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=42.4
Q ss_pred CCcccchhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEec
Q 013298 70 TGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 70 ~~~~a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
+.+-.|..-..|..|+++++.-+. .+|.= | -| ..-..++..++.+.|+++++.++
T Consensus 54 n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-----------~-sD---Cn~le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 54 NDDGTCKSADQVASDLELLASYTH-SIRTY-----------G-SD---CNTLENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCCCcCHHHHHhHHHHhccCCc-eEEEe-----------e-cc---chhhhhhHHHHHhcCceEEEEEe
Confidence 334478888999999999999887 66653 2 33 23455899999999999999874
No 45
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=94.11 E-value=0.1 Score=42.05 Aligned_cols=19 Identities=42% Similarity=0.747 Sum_probs=13.5
Q ss_pred HHHHhcC--cceEEEecCC-Cc
Q 013298 171 CFREFGD--RVSYWTTVNE-PN 189 (446)
Q Consensus 171 ~~~~~~~--~v~~w~t~NE-p~ 189 (446)
|+++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 3566765 8999999999 65
No 46
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=93.81 E-value=0.2 Score=47.95 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEecCC--------------CCcHhHHhh----------------h-CCC---CChH---h
Q 013298 118 LQYYNNLINELISYGIQPHVTLHHL--------------DLPQALEDE----------------Y-GGW---INRM---I 160 (446)
Q Consensus 118 ~~~y~~~i~~l~~~gi~p~vtL~h~--------------~~P~~l~~~----------------~-gg~---~~~~---~ 160 (446)
.+.++.+|+.-+++|..+|+||.=- ..|.|-..+ . +.- .+|+ .
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 3678999999999999999998421 112221111 0 111 1333 1
Q ss_pred HHHHHHHHHHHHHHhcCc-----ceEEEecCCCceeeeccccccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 013298 161 VKDFTAYADVCFREFGDR-----VSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHAS 235 (446)
Q Consensus 161 ~~~f~~ya~~~~~~~~~~-----v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~nll~Ah~~ 235 (446)
...-.+++..+..+||.. |++|..-|||.+... .+ ++. +..+..+.-+.....+.|+
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~------TH----~dV--------HP~~~t~~El~~r~i~~Ak 164 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHS------TH----RDV--------HPEPVTYDELRDRSIEYAK 164 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHH------HT----TTT----------S---HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcc------cc----ccc--------CCCCCCHHHHHHHHHHHHH
Confidence 123445577777787765 999999999986321 11 111 0112335666777788899
Q ss_pred HHHH
Q 013298 236 VARL 239 (446)
Q Consensus 236 a~~~ 239 (446)
|+|.
T Consensus 165 aiK~ 168 (239)
T PF12891_consen 165 AIKA 168 (239)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9998
No 47
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=93.67 E-value=0.34 Score=54.50 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=67.3
Q ss_pred chhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCC
Q 013298 75 CDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGG 154 (446)
Q Consensus 75 ~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg 154 (446)
+-.+..+++|+++||++|+|++|.| +.++. .+..+.|-+.||=++=...+. - +++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----------HyP~~------~~~ydLcDelGllV~~Ea~~~-----~---~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----------HYPNS------EEFYDLCDELGLLVIDEAMIE-----T---HGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----------CCCCC------HHHHHHHHHhCcEEEEecchh-----h---cCC
Confidence 4456679999999999999999999 23331 256678888999988755331 1 244
Q ss_pred CCChHhHHHHHHHHHHHHHHhcC--cceEEEecCCCc
Q 013298 155 WINRMIVKDFTAYADVCFREFGD--RVSYWTTVNEPN 189 (446)
Q Consensus 155 ~~~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~ 189 (446)
..+++..+...+=++.+++|-++ .|-.|+.=||..
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 46677777888888889999877 477799999965
No 48
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=92.70 E-value=10 Score=40.56 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCCEEEeeCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCceEEEEeeccc-c---cccccCCCcCc
Q 013298 330 VLEYFKRVYGNPPIYVHENGLATPRHSSLEDISRVKYLHAYIGSVLDAVRNGSNTRGYFVWSFL-D---VFELLDGYASS 405 (446)
Q Consensus 330 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~D~~Ri~yl~~~l~~v~~Ai~dGv~V~GY~~WSL~-D---n~EW~~Gy~~r 405 (446)
.|..++++|++..|+-||...+....+..-|.-..+--.++...+...+..| +.|+..|.|+ | ..-|..++..
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~~n~~d- 395 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWVGNFCD- 395 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT---B--
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCcccCCCCC-
Confidence 5778999999888999998766432111111111111233445556667777 6899999985 3 2234433433
Q ss_pred cceEEEcCCCCCCccccchhHHHHHHHHh
Q 013298 406 YGLYYVDRDDPDLKRYPKLSALWYSQFLK 434 (446)
Q Consensus 406 fGL~~VD~~~~~~~R~pK~S~~~y~~ii~ 434 (446)
..+-||.++ .+-+..+..+.++++-+
T Consensus 396 -~~iivd~~~--~~~~~~p~yY~~gHfSK 421 (496)
T PF02055_consen 396 -APIIVDSDT--GEFYKQPEYYAMGHFSK 421 (496)
T ss_dssp --SEEEEGGG--TEEEE-HHHHHHHHHHT
T ss_pred -ceeEEEcCC--CeEEEcHHHHHHHHHhc
Confidence 334477666 44444556666665543
No 49
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=90.71 E-value=0.21 Score=50.06 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=37.0
Q ss_pred HHHHHHHHHH--hCCCCEEEeeCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCce-----EEEEeecccccccccC
Q 013298 328 QIVLEYFKRV--YGNPPIYVHENGLATPRHSSLEDISRVKYLHAYIGSVLDAVRNGSNT-----RGYFVWSFLDVFELLD 400 (446)
Q Consensus 328 ~~~L~~~~~r--Y~~ppI~ITENG~~~~~~~~~~D~~Ri~yl~~~l~~v~~Ai~dGv~V-----~GY~~WSL~Dn~EW~~ 400 (446)
.+.+...-++ +++.||+|||+||++.++....=..- +.+...+.+.+.+|.+. .-+++-+++|- .|..
T Consensus 213 ~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA----~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE-~~K~ 287 (310)
T PF00332_consen 213 VDAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENA----QAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDE-NWKP 287 (310)
T ss_dssp HHHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHH----HHHHHHHHHHCCGBBSSSBSS---EEES-SB---TTSS
T ss_pred HHHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchh----HHHHHHHHHHHhCCCcccCCCCCeEEEEEEecC-cCCC
Confidence 3344444444 44668999999999864200011112 33344455555566553 24788899984 4555
Q ss_pred C--CcCccceEEEc
Q 013298 401 G--YASSYGLYYVD 412 (446)
Q Consensus 401 G--y~~rfGL~~VD 412 (446)
| .+..|||++.|
T Consensus 288 ~~~~E~~wGlf~~d 301 (310)
T PF00332_consen 288 GPEVERHWGLFYPD 301 (310)
T ss_dssp SSGGGGG--SB-TT
T ss_pred CCcccceeeeECCC
Confidence 5 58899999876
No 50
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=89.74 E-value=3.8 Score=40.56 Aligned_cols=88 Identities=20% Similarity=0.390 Sum_probs=61.7
Q ss_pred hhhchHHHHHHHHHcCCCEEEecc---cccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhC
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSI---SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYG 153 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si---~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~g 153 (446)
-..||.+--++++++|+|..-+.= .-..+ ..+-++.+.++-+.++..||++.+++. |..|.-+ |
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVNa~~~~L--------t~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----g 121 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVNANPKLL--------TPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----G 121 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS--CGGG--------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred chhHHHHHHHHHhhcCCceEEecccccChhhc--------CHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----C
Confidence 357888889999999999987542 22222 223377788999999999999999985 5677654 5
Q ss_pred CC-----CChHhHHHHHHHHHHHHHHhcC
Q 013298 154 GW-----INRMIVKDFTAYADVCFREFGD 177 (446)
Q Consensus 154 g~-----~~~~~~~~f~~ya~~~~~~~~~ 177 (446)
|- ++++++.++.+=++.+.++..|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 53 5789999999999999998876
No 51
>smart00642 Aamy Alpha-amylase domain.
Probab=88.54 E-value=1.8 Score=39.14 Aligned_cols=63 Identities=16% Similarity=0.330 Sum_probs=44.4
Q ss_pred hhhchHHHHHHHHHcCCCEEEeccccccccc--CCCC-------CCChh--hHHHHHHHHHHHHHCCCEEEEEe
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIP--NGRG-------PVNPK--GLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P--~~~g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.+....+-++.+++||++++-++--+..... ...| .+++. ..+-++++|++|+++||++|+++
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3555677788999999999998876555531 1101 12211 24568899999999999999987
No 52
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=86.37 E-value=17 Score=38.07 Aligned_cols=87 Identities=21% Similarity=0.414 Sum_probs=56.1
Q ss_pred HHH-HHHHHHcCCCEEEe-------------------------cccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEE
Q 013298 82 KED-VKLMADTGLDAYRF-------------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 135 (446)
Q Consensus 82 ~~D-i~l~~~lG~~~~R~-------------------------si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p 135 (446)
++| ++++|+|.+...|+ .+.|...|+...| .+++++.|+..|.+|
T Consensus 51 RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---------t~EF~~~~e~iGaep 121 (501)
T COG3534 51 RKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---------THEFMDWCELIGAEP 121 (501)
T ss_pred HHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---------HHHHHHHHHHhCCce
Confidence 555 78999999999985 2334433333222 458999999999999
Q ss_pred EEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHH--------HHHHHhcC----cceEEEecCCCc
Q 013298 136 HVTLHHLDLPQALEDEYGGWINRMIVKDFTAYAD--------VCFREFGD----RVSYWTTVNEPN 189 (446)
Q Consensus 136 ~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~--------~~~~~~~~----~v~~w~t~NEp~ 189 (446)
++.+.= |. ...+....|.+|+. ..-+..|- .|++|.+=||-.
T Consensus 122 ~~avN~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 122 YIAVNL-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred EEEEec-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 999842 11 23344556666654 22233332 599999999953
No 53
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=84.32 E-value=0.61 Score=48.57 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=78.6
Q ss_pred hHHHHHHHHHcCCCEEEecc-cccccccCCCCCCChhh-HHHHHHHHHHHHHCCCEEEEEec----CCCCcHhHHhhhCC
Q 013298 81 YKEDVKLMADTGLDAYRFSI-SWSRLIPNGRGPVNPKG-LQYYNNLINELISYGIQPHVTLH----HLDLPQALEDEYGG 154 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si-~W~ri~P~~~g~~n~~~-~~~y~~~i~~l~~~gi~p~vtL~----h~~~P~~l~~~~gg 154 (446)
-+.|++.++.+|++..|++| +=..+ -+..|..|++. +.+.+-+++.+.+.+|++++||. |+.--+|...=.|+
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 45789999999999999995 31222 22236777765 88899999999999999999984 54443333210011
Q ss_pred ------CCChHhHHHHHHHHHHHHHHhcCcce--EEEecCCCce
Q 013298 155 ------WINRMIVKDFTAYADVCFREFGDRVS--YWTTVNEPNG 190 (446)
Q Consensus 155 ------~~~~~~~~~f~~ya~~~~~~~~~~v~--~w~t~NEp~~ 190 (446)
..++....-|.+|++-++..|+-.+. -|..-|||-+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 23567778899999999998887544 4999999764
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=83.55 E-value=13 Score=32.35 Aligned_cols=90 Identities=9% Similarity=0.181 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCEEEeccc------c--cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecC-C------CCcHh
Q 013298 83 EDVKLMADTGLDAYRFSIS------W--SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH-L------DLPQA 147 (446)
Q Consensus 83 ~Di~l~~~lG~~~~R~si~------W--~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h-~------~~P~~ 147 (446)
+=++.+|++|+|++-+... | +++.+.- -... -+.+.++|++|+++||++++=+.. + ..|.|
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~h-p~L~---~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW 79 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRH-PGLK---RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEW 79 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCC-CCCC---cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCce
Confidence 3468899999999999332 2 2332221 1122 477889999999999999986532 2 34777
Q ss_pred HHhhhC------------CC----CChHhHHHHHHHHHHHHHHhc
Q 013298 148 LEDEYG------------GW----INRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 148 l~~~~g------------g~----~~~~~~~~f~~ya~~~~~~~~ 176 (446)
+..... || .|....+...+-.+.++++|.
T Consensus 80 ~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 80 FVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred eeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 763211 23 255566777777777777773
No 55
>PLN02361 alpha-amylase
Probab=81.35 E-value=4.5 Score=42.00 Aligned_cols=64 Identities=16% Similarity=0.306 Sum_probs=47.2
Q ss_pred hhhhchHHHHHHHHHcCCCEEEecccccccccCCC-----CCCChh--hHHHHHHHHHHHHHCCCEEEEEe
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-----GPVNPK--GLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-----g~~n~~--~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.+|....+-++-|++||++++=++-......+.|= -.+|.. ..+-++++|++|+++||++|+++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 48899999999999999999988876544433220 011211 23458899999999999999976
No 56
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=80.32 E-value=8.3 Score=38.62 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=65.5
Q ss_pred hhchHHHHHHHHHcCCCEEEecccc-------cccccCCC---CCC-ChhhHHHHHHHHHHHHHCCCEEEEEe-cC----
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSISW-------SRLIPNGR---GPV-NPKGLQYYNNLINELISYGIQPHVTL-HH---- 141 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si~W-------~ri~P~~~---g~~-n~~~~~~y~~~i~~l~~~gi~p~vtL-~h---- 141 (446)
-...++-++.|+++|+|++=+.+.+ |.++|... |.. ...+.+.+..+|++++++||++..-+ ..
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 3456778899999999987666543 34444321 111 11256778899999999999987544 11
Q ss_pred ------CCCcHhHHhhh-----------C--CCC---ChHhHHHHHHHHHHHHHHhc
Q 013298 142 ------LDLPQALEDEY-----------G--GWI---NRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 142 ------~~~P~~l~~~~-----------g--g~~---~~~~~~~f~~ya~~~~~~~~ 176 (446)
-..|.|+..+. + .|. +|++.+...+-++.|+++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 13466654211 1 144 47888999999999999995
No 57
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=78.13 E-value=7.3 Score=38.26 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCccchhhhccCCCCCCCcccchhhhchHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCC
Q 013298 54 TPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYG 132 (446)
Q Consensus 54 ~~s~wd~~~~~~~~~~~~~~a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~g 132 (446)
|.+.|+.|.... ....+..+.-.+..+++=|+..+++|+..+=+.-.|+.-.+... .......-....++++-.+++|
T Consensus 8 Gk~~W~Ww~~~~-~~~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~Kg 86 (273)
T PF10566_consen 8 GKAAWSWWSMHN-GKGVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKG 86 (273)
T ss_dssp EEEEECTCCCCT-TSSBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT
T ss_pred ceEEEeecccCC-CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcC
Confidence 456777765431 11222334557888999999999999999999999997332221 0000111123669999999999
Q ss_pred CEEEEEecC
Q 013298 133 IQPHVTLHH 141 (446)
Q Consensus 133 i~p~vtL~h 141 (446)
+.+++-.+|
T Consensus 87 Vgi~lw~~~ 95 (273)
T PF10566_consen 87 VGIWLWYHS 95 (273)
T ss_dssp -EEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999998876
No 58
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=77.00 E-value=5.3 Score=38.71 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=40.5
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCC-------CCChh--hHHHHHHHHHHHHHCCCEEEEEe
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNPK--GLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
..+-++.+|+||++++-++--+..-. ...| .+|++ ..+=++++|++|.++||++|+++
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35668899999999999986555211 1111 12221 35568899999999999999987
No 59
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=73.62 E-value=9.2 Score=37.69 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=61.0
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCCh
Q 013298 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINR 158 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~ 158 (446)
+-+.|++++++.|++.+++.++=|...-... +.--++.++...++|..+++.|+++.+++-+|+-|. +
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r 143 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------R 143 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------c
Confidence 3367999999999999999985554433221 333467889999999999999999999998776553 1
Q ss_pred HhHHHHHHHHHHHHH
Q 013298 159 MIVKDFTAYADVCFR 173 (446)
Q Consensus 159 ~~~~~f~~ya~~~~~ 173 (446)
..++.+.+.++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~ 158 (280)
T cd07945 144 DSPDYVFQLVDFLSD 158 (280)
T ss_pred CCHHHHHHHHHHHHH
Confidence 125677777777654
No 60
>PLN00196 alpha-amylase; Provisional
Probab=73.15 E-value=8 Score=40.55 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=45.8
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCC-----CCCCh-h--hHHHHHHHHHHHHHCCCEEEEEe--cC
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-----GPVNP-K--GLQYYNNLINELISYGIQPHVTL--HH 141 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-----g~~n~-~--~~~~y~~~i~~l~~~gi~p~vtL--~h 141 (446)
+|....+.+.-+++||++++=++-......+.|= -.+|. . .-+-++++|++|+++||++|++. .|
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 4566788899999999999999876554322220 11221 0 12358899999999999999985 55
No 61
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=70.94 E-value=16 Score=36.08 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecC-CCCcHhHHhhhCCCCC
Q 013298 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHH-LDLPQALEDEYGGWIN 157 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~~~gg~~~ 157 (446)
.-.+|+++..+.|++.+++.++=|...-... +.-.++.++...++|+.++++|+++.+++.. |..|. .|..+
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~~ 153 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEVP 153 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCCC
Confidence 3589999999999999999986554322111 3334567888999999999999999887753 44442 33333
Q ss_pred hHhHHHHHHHHHHHHHH
Q 013298 158 RMIVKDFTAYADVCFRE 174 (446)
Q Consensus 158 ~~~~~~f~~ya~~~~~~ 174 (446)
++.+.++++.+.+.
T Consensus 154 ---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 154 ---PEAVADVAERLFAL 167 (287)
T ss_pred ---HHHHHHHHHHHHHc
Confidence 67777888877653
No 62
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=70.11 E-value=14 Score=35.70 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHh
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMI 160 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 160 (446)
.+|++++.+.|++.+|+.++.+.+.-... +.-.++.++...++++.+++.|+++.+++.. .+..+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~~~--- 137 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED-----------ASRAD--- 137 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc-----------CCCCC---
Confidence 78999999999999999998776632211 3334567888999999999999998866521 22223
Q ss_pred HHHHHHHHHHHHH
Q 013298 161 VKDFTAYADVCFR 173 (446)
Q Consensus 161 ~~~f~~ya~~~~~ 173 (446)
++...+.++.+.+
T Consensus 138 ~~~~~~~~~~~~~ 150 (259)
T cd07939 138 PDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666543
No 63
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.85 E-value=16 Score=38.49 Aligned_cols=111 Identities=19% Similarity=0.418 Sum_probs=71.6
Q ss_pred hhchHHHHHHHHHcCCCEEEec----ccccccccCC-----------------------C-----CCCChh----hHHHH
Q 013298 78 YHKYKEDVKLMADTGLDAYRFS----ISWSRLIPNG-----------------------R-----GPVNPK----GLQYY 121 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~s----i~W~ri~P~~-----------------------~-----g~~n~~----~~~~y 121 (446)
|.+|+..|+.|+=+|+|..=-. +-|.+|+-.- + |...+. .+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6899999999999999965422 1244443221 0 222221 12233
Q ss_pred HHHHHHHHHCCCEEEEEecCCCCcHhHHhh--------hCCCC---------------ChHhHHHHHHHHHHHHHHhcCc
Q 013298 122 NNLINELISYGIQPHVTLHHLDLPQALEDE--------YGGWI---------------NRMIVKDFTAYADVCFREFGDR 178 (446)
Q Consensus 122 ~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~--------~gg~~---------------~~~~~~~f~~ya~~~~~~~~~~ 178 (446)
+++|+.+++-||+|++--+---.|..|..- -+.|. +|-+++-=..|.+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 679999999999999988777788887641 13332 2345555566777888999962
Q ss_pred ceEE--EecCCC
Q 013298 179 VSYW--TTVNEP 188 (446)
Q Consensus 179 v~~w--~t~NEp 188 (446)
-..+ -||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 2223 489994
No 64
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=69.73 E-value=10 Score=42.11 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=39.5
Q ss_pred HHHHHHcCCCEEEe----ccccccccc------------------CCCCCCCh---hhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 85 VKLMADTGLDAYRF----SISWSRLIP------------------NGRGPVNP---KGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 85 i~l~~~lG~~~~R~----si~W~ri~P------------------~~~g~~n~---~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
|+-+|+|||+++.+ ++...+..+ ++....++ ..+.=+++||++|.++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999984 334444332 21111222 257779999999999999999986
No 65
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=69.59 E-value=18 Score=36.50 Aligned_cols=110 Identities=17% Similarity=0.448 Sum_probs=57.4
Q ss_pred hhchHHHHHHHHHcCCCEEEecc----cccccccCC--------------------------C--CCCCh----hhHHHH
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSI----SWSRLIPNG--------------------------R--GPVNP----KGLQYY 121 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si----~W~ri~P~~--------------------------~--g~~n~----~~~~~y 121 (446)
|.||++.|+.|+=-|||.-=--+ -|.|+.-+- . |.+.+ +-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 68999999999999999543111 133332221 0 22221 223455
Q ss_pred HHHHHHHHHCCCEEEEEecCCCCcHhHHhhh--------CCC--------CChHhHHHHHHHH----HHHHHHhcCcceE
Q 013298 122 NNLINELISYGIQPHVTLHHLDLPQALEDEY--------GGW--------INRMIVKDFTAYA----DVCFREFGDRVSY 181 (446)
Q Consensus 122 ~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~--------gg~--------~~~~~~~~f~~ya----~~~~~~~~~~v~~ 181 (446)
+++++.+++-||+|++--+---.|..+.+++ |.| ++|. -..|.+.+ +...+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~-dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPT-DPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS---HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCC-CchHHHHHHHHHHHHHHhcC-CCce
Confidence 7899999999999999877777888887654 223 2332 24455544 45567788 4445
Q ss_pred E--EecCCCc
Q 013298 182 W--TTVNEPN 189 (446)
Q Consensus 182 w--~t~NEp~ 189 (446)
+ -+|||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 5 3889943
No 66
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=69.20 E-value=14 Score=39.15 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=45.2
Q ss_pred hhhhchHHHHHHHHHcCCCEEEeccccccc--------ccCCC---------CCCChh--hHHHHHHHHHHHHHCCCEEE
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRL--------IPNGR---------GPVNPK--GLQYYNNLINELISYGIQPH 136 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~ri--------~P~~~---------g~~n~~--~~~~y~~~i~~l~~~gi~p~ 136 (446)
+.|.-..+-++-+++||++++=++-..... .|..- |.+|+. ..+-++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 345556777899999999999887754432 11110 012211 23458899999999999999
Q ss_pred EEe--cCC
Q 013298 137 VTL--HHL 142 (446)
Q Consensus 137 vtL--~h~ 142 (446)
+++ .|-
T Consensus 99 ~D~V~NH~ 106 (479)
T PRK09441 99 ADVVLNHK 106 (479)
T ss_pred EEECcccc
Confidence 986 554
No 67
>PRK05402 glycogen branching enzyme; Provisional
Probab=68.93 E-value=36 Score=38.31 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=60.5
Q ss_pred hhchHHHH-HHHHHcCCCEEEeccccc---------------ccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe--
Q 013298 78 YHKYKEDV-KLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 139 (446)
Q Consensus 78 y~~~~~Di-~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-- 139 (446)
|.-..+.+ +.+|+||++++=+.--.. .|.|.= |. .+-++++|++|.++||++|+++
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 34444554 788999999997665321 122221 32 3447799999999999999986
Q ss_pred cCCCCc-----------HhHHh-----hhCCC-------CChHhHHHHHHHHHHHHHHhcCcceEE
Q 013298 140 HHLDLP-----------QALED-----EYGGW-------INRMIVKDFTAYADVCFREFGDRVSYW 182 (446)
Q Consensus 140 ~h~~~P-----------~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~~~~~v~~w 182 (446)
.|+... .+... .+..| .++++.+.+.+-++.-+++|+ |+-|
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~ 401 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGL 401 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 465221 11110 01122 467888888888888888875 4444
No 68
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=66.43 E-value=14 Score=39.92 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=41.8
Q ss_pred hhhhchHHHHHHHHHcCCCEEEecccccccccCCCC-------CCChh--hHHHHHHHHHHHHHCCCEEEEEe
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNPK--GLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
+-+.-..+-++.+++||++++=++--...-.-.. | .+|+. ..+-++++|++|+++||++|+++
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~-gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDN-GYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCC-CCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3445566778999999999987764433211000 1 11111 24558899999999999999986
No 69
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=66.28 E-value=44 Score=36.21 Aligned_cols=93 Identities=17% Similarity=0.255 Sum_probs=57.5
Q ss_pred hhhchHHHHHHHHHcCCCEEEeccc--------c-------cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe--
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 139 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-- 139 (446)
-+.-..+-++.+|+||++++-+.-- | -.+.|.= |. .+-++++|++|.++||++|+++
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4555667789999999999976532 1 1111111 22 3457899999999999999986
Q ss_pred cCCC---------CcHhHHh-hhCCC------CCh---HhHHHHHHHHHHHHHHhc
Q 013298 140 HHLD---------LPQALED-EYGGW------INR---MIVKDFTAYADVCFREFG 176 (446)
Q Consensus 140 ~h~~---------~P~~l~~-~~gg~------~~~---~~~~~f~~ya~~~~~~~~ 176 (446)
.|.. .| |+.. ...+| .++ .+.+.+.+-++.-++.|+
T Consensus 183 NH~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 183 NHFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 4542 12 2221 11233 234 666677776666666664
No 70
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=66.13 E-value=21 Score=37.88 Aligned_cols=98 Identities=16% Similarity=0.320 Sum_probs=63.0
Q ss_pred CCCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc-CCCCC-------CCcccchhhhchHHH-----HHHHHHcCCC
Q 013298 28 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVPG-------TGDVACDEYHKYKED-----VKLMADTGLD 94 (446)
Q Consensus 28 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~-------~~~~a~d~y~~~~~D-----i~l~~~lG~~ 94 (446)
.|+.==.||.|| |++--.. -..+-|+....- ..+++ .|. -.=-|..|.+| +++.++.|++
T Consensus 48 G~~siE~wGGAt--fd~~~rf----l~edpwerlr~~r~~~~nt~lqmLlRG~-n~vgy~~ypddvv~~fv~~a~~~Gid 120 (468)
T PRK12581 48 GYYSLECWGGAT--FDACIRF----LNEDPWERLRTLKKGLPNTRLQMLLRGQ-NLLGYRHYADDIVDKFISLSAQNGID 120 (468)
T ss_pred CCCEEEecCCcc--hhhhhcc----cCCCHHHHHHHHHHhCCCCceeeeeccc-cccCccCCcchHHHHHHHHHHHCCCC
Confidence 444433676555 7753332 134668765543 22222 111 11247778888 9999999999
Q ss_pred EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCc
Q 013298 95 AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (446)
Q Consensus 95 ~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 145 (446)
.+|+.- ..| .++-....|+.+++.|..+.+++++=+.|
T Consensus 121 i~Rifd-----------~ln--d~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 121 VFRIFD-----------ALN--DPRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred EEEEcc-----------cCC--CHHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 999873 233 25567788999999999999998886666
No 71
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=66.07 E-value=45 Score=33.07 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=68.1
Q ss_pred chHHHHHHHHHcC--CCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCC---CcHhHHhhh--
Q 013298 80 KYKEDVKLMADTG--LDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD---LPQALEDEY-- 152 (446)
Q Consensus 80 ~~~~Di~l~~~lG--~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~---~P~~l~~~~-- 152 (446)
..++-++.+++.| ++++=+.+.|.+-.-.+.=.+|++.+--.+++|+.|+++|+++++.+.-+. .|..-..+.
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 3567789999999 556777788885322112245666666678999999999999988776442 222111000
Q ss_pred -------------------CC---CCChHhHHHHHHHHHHHHHHhcCcceE-EEecCCC
Q 013298 153 -------------------GG---WINRMIVKDFTAYADVCFREFGDRVSY-WTTVNEP 188 (446)
Q Consensus 153 -------------------gg---~~~~~~~~~f~~ya~~~~~~~~~~v~~-w~t~NEp 188 (446)
++ ++||+..+.|.+..+.+.+ .| |+. |.=+|||
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 12 4688888888777776544 33 454 5557886
No 72
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=66.00 E-value=19 Score=34.54 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHh
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMI 160 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 160 (446)
+++++++++.|++.+|++++-+-+.-... +.=.+..++...+.|+.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 89999999999999999997663211110 11122357778899999999999999998653332 123
Q ss_pred HHHHHHHHHHHH
Q 013298 161 VKDFTAYADVCF 172 (446)
Q Consensus 161 ~~~f~~ya~~~~ 172 (446)
.+.+.++++.+.
T Consensus 145 ~~~l~~~~~~~~ 156 (265)
T cd03174 145 PEYVLEVAKALE 156 (265)
T ss_pred HHHHHHHHHHHH
Confidence 556666666654
No 73
>PRK03705 glycogen debranching enzyme; Provisional
Probab=65.62 E-value=15 Score=40.68 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=36.9
Q ss_pred HHHHHHcCCCEEEecccc------------------------cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 85 VKLMADTGLDAYRFSISW------------------------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 85 i~l~~~lG~~~~R~si~W------------------------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
|+-+|+||++++=+.--- -.++|.= |.-....++-+++||++|.++||++|+++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 899999999999764321 1122221 21111235668899999999999999986
No 74
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=65.61 E-value=17 Score=37.05 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=61.5
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecC-CCCcHhHHhhhCCCCCh
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHH-LDLPQALEDEYGGWINR 158 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~~~gg~~~~ 158 (446)
=.+|++++.+.|++.+.+.++=|...-... +.=-++.++.+.++|+.++++|+++.+++.. |..|. .+-.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~- 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP- 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC-
Confidence 589999999999999999986655543322 3345678999999999999999999877753 44442 23233
Q ss_pred HhHHHHHHHHHHHHH
Q 013298 159 MIVKDFTAYADVCFR 173 (446)
Q Consensus 159 ~~~~~f~~ya~~~~~ 173 (446)
++.+.++++.+.+
T Consensus 196 --~~~l~~~~~~~~~ 208 (347)
T PLN02746 196 --PSKVAYVAKELYD 208 (347)
T ss_pred --HHHHHHHHHHHHH
Confidence 6677777777654
No 75
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=64.55 E-value=16 Score=39.56 Aligned_cols=62 Identities=18% Similarity=0.390 Sum_probs=42.8
Q ss_pred hhhhchHHHHHHHHHcCCCEEEecccccccccCCC-C-------CCChh--hHHHHHHHHHHHHHCCCEEEEEe
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-G-------PVNPK--GLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
+-+.-..+.++.+++||++++=++--+.. |... | .+|+. ..+-++++|+++.++||++|+++
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44555678899999999999987654421 2111 1 11111 23558899999999999999987
No 76
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=63.42 E-value=23 Score=36.31 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=48.3
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecC
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHH 141 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h 141 (446)
.++|++.+.+.|++.+|+.++-|.+.-+.. +.-.++.++...+.|..+++.|+++.+++-.
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 489999999999999999887766643321 3334557888999999999999999988753
No 77
>PRK12313 glycogen branching enzyme; Provisional
Probab=62.43 E-value=66 Score=35.55 Aligned_cols=97 Identities=14% Similarity=0.216 Sum_probs=61.2
Q ss_pred hhchHHH-HHHHHHcCCCEEEeccccc---------------ccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe--
Q 013298 78 YHKYKED-VKLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 139 (446)
Q Consensus 78 y~~~~~D-i~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-- 139 (446)
|.-..+. ++.+|+||++++=+.--.. .|.|.= |. .+=++++|++|.++||++|+++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 4445667 4999999999997654221 122221 32 3447899999999999999985
Q ss_pred cCCCCcH----hHH--------h----hhCCC-------CChHhHHHHHHHHHHHHHHhcCcceEE
Q 013298 140 HHLDLPQ----ALE--------D----EYGGW-------INRMIVKDFTAYADVCFREFGDRVSYW 182 (446)
Q Consensus 140 ~h~~~P~----~l~--------~----~~gg~-------~~~~~~~~f~~ya~~~~~~~~~~v~~w 182 (446)
.|+.... ++. + ....| .|+++.+.+.+-++.-++.|+ |+-|
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~ 306 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGL 306 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 4653211 110 0 00123 367888888888888888875 4444
No 78
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=62.08 E-value=29 Score=36.86 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=43.3
Q ss_pred hhhchHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCc
Q 013298 77 EYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (446)
Q Consensus 77 ~y~~~~~D-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 145 (446)
.|..|.+| ++...+.|++.+|+..+-+- ++-....|+.+++.|+.+..++++-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd-------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALND-------------IRNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCH-------------HHHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 46678888 99999999999999975543 3345678889999999988888654445
No 79
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=62.01 E-value=59 Score=32.81 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=61.0
Q ss_pred hhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCC
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGW 155 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~ 155 (446)
=||+ |+= .-...+.|+..+|+. + |.+-.+. ....+++.++++|+-.=+...|-.+..-+.++|++-
T Consensus 81 iHf~-~rl-a~~~~~~g~~k~RIN---------P-GNig~~~--~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~p 146 (361)
T COG0821 81 IHFD-YRL-ALEAAECGVDKVRIN---------P-GNIGFKD--RVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGP 146 (361)
T ss_pred eecc-HHH-HHHhhhcCcceEEEC---------C-cccCcHH--HHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCC
Confidence 3665 332 333556789999986 3 5554332 688999999999999999999999999999999877
Q ss_pred CChHhHHHHHHHHHHH
Q 013298 156 INRMIVKDFTAYADVC 171 (446)
Q Consensus 156 ~~~~~~~~f~~ya~~~ 171 (446)
+-+..++--.++++.+
T Consensus 147 t~ealveSAl~~a~~~ 162 (361)
T COG0821 147 TPEALVESALEHAELL 162 (361)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6666666666666654
No 80
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=61.68 E-value=15 Score=35.87 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEec
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
.+|++++.+.|++.+|+.++=|...-... +.=-++.++...+++..+++.|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 67999999999999999886444322211 222356789999999999999999999884
No 81
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=60.88 E-value=24 Score=33.37 Aligned_cols=75 Identities=17% Similarity=0.389 Sum_probs=50.3
Q ss_pred hhchHHHHHHHHHcCCCEEEe----------------------cccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEE
Q 013298 78 YHKYKEDVKLMADTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 135 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~----------------------si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p 135 (446)
--.-+.=+++|++||.+++.| ++ | +||.| .+| ++.+.+++.-+++.|++-
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG--GId---l~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG--GID---LDNFEEIVQIALDAGVEK 205 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC--Ccc---HHhHHHHHHHHHHcCCCe
Confidence 345677899999999999885 23 3 57775 477 778889999999999987
Q ss_pred EEEecCCCCcHhHHhhhCCCCChHhHHHH
Q 013298 136 HVTLHHLDLPQALEDEYGGWINRMIVKDF 164 (446)
Q Consensus 136 ~vtL~h~~~P~~l~~~~gg~~~~~~~~~f 164 (446)
++ .|- +- ..-++..|-+.++-+...
T Consensus 206 vi--PHI-Ys-siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 206 VI--PHV-YS-SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred ec--ccc-ce-eccccccCCCCHHHHHHH
Confidence 63 331 11 111333566666554433
No 82
>PLN02784 alpha-amylase
Probab=60.69 E-value=26 Score=39.86 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=47.3
Q ss_pred hhhhchHHHHHHHHHcCCCEEEecccccccccCCC-----CCCChh--hHHHHHHHHHHHHHCCCEEEEEe
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-----GPVNPK--GLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-----g~~n~~--~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.+|....+.++-|++||++++=++-......+.|= ..+|.. ..+-++.+|++|+++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 57889999999999999999988876544433320 011211 23458899999999999999985
No 83
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=60.37 E-value=25 Score=34.41 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEeccccc-ccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 82 KEDVKLMADTGLDAYRFSISWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
+|.++.||++|++.+-++++-+ .+.+.-.+..+ ++.+.+.++.++++||.+.+.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s---~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHT---YDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCC---HHHHHHHHHHHHHcCCEEEEeE
Confidence 8899999999999999998821 12222112223 6677889999999999865543
No 84
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=60.28 E-value=59 Score=32.26 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=72.1
Q ss_pred chHHHHHHHHHcCC--CEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCc---HhHH-----
Q 013298 80 KYKEDVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP---QALE----- 149 (446)
Q Consensus 80 ~~~~Di~l~~~lG~--~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P---~~l~----- 149 (446)
...+-++.+++.|+ +++=+.+.|..-. +.=.+|.+.+.--.++|+.|+++|+++++.+.-+-.+ ..-.
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 34666788899995 5777777786432 2234566666667899999999999999977543221 1111
Q ss_pred ----hhhC-------------C---CCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCc
Q 013298 150 ----DEYG-------------G---WINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (446)
Q Consensus 150 ----~~~g-------------g---~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 189 (446)
+..| + ++||+.++.+.+..+.+....| ---+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG-IDSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC-CcEEEeCCCCcc
Confidence 0001 1 5689999999998888887775 233477789997
No 85
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=59.84 E-value=20 Score=38.64 Aligned_cols=60 Identities=13% Similarity=0.293 Sum_probs=39.7
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCC-------CCChh--hHHHHHHHHHHHHHCCCEEEEEe
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNPK--GLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.-..+-++-+++||++++=++--...-.- ..| .+|++ ..+-++++|+++.++||++|+++
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~-~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLR-DDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCC-CCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 33466689999999999877643221100 001 12221 24568899999999999999986
No 86
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=59.65 E-value=38 Score=33.06 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhH
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIV 161 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~ 161 (446)
.+|++...+.|++.+|+++..+ .++...++++.++++|+++.+.+.+-. + -..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CCH
Confidence 5789999999999999987332 366788999999999999999986521 1 125
Q ss_pred HHHHHHHHHHHH
Q 013298 162 KDFTAYADVCFR 173 (446)
Q Consensus 162 ~~f~~ya~~~~~ 173 (446)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 677777777654
No 87
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=59.54 E-value=89 Score=34.41 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=59.0
Q ss_pred hhchHHHH-HHHHHcCCCEEEecc-cccc--------------cccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe--
Q 013298 78 YHKYKEDV-KLMADTGLDAYRFSI-SWSR--------------LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 139 (446)
Q Consensus 78 y~~~~~Di-~l~~~lG~~~~R~si-~W~r--------------i~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-- 139 (446)
|.-..+.+ +.+|+||++++=+.- ..+. +.|.= |. .+=++++|++|.++||++|+++
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-Gt-----~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-GT-----PDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 44445565 889999999998843 2221 11110 22 2347799999999999999986
Q ss_pred cCCCC-----------cHhHHh-----hhCCC-------CChHhHHHHHHHHHHHHHHhc
Q 013298 140 HHLDL-----------PQALED-----EYGGW-------INRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 140 ~h~~~-----------P~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~~~ 176 (446)
.|... |.+... ....| .++++.+.+.+-++.-++.|+
T Consensus 229 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 229 GHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 35421 111110 00112 357888888888888888885
No 88
>PRK10785 maltodextrin glucosidase; Provisional
Probab=59.29 E-value=26 Score=38.42 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=38.7
Q ss_pred hHHHHHHHHHcCCCEEEeccccc-------------ccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 81 YKEDVKLMADTGLDAYRFSISWS-------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~-------------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
..+-++-+++|||+++=++--.. +|.|.= | ..+-++++|++|.++||++|+++
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G-----t~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G-----GDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 45668999999999998774322 222221 2 23457899999999999999987
No 89
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=59.21 E-value=33 Score=37.64 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=57.7
Q ss_pred hhhchHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCc----Hh
Q 013298 77 EYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP----QA 147 (446)
Q Consensus 77 ~y~~~~~D-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P----~~ 147 (446)
-|.+|.+| ++..++.|++.+|+....+-+ +.....|+.+++.|....+++++=+.| ..
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 35666555 999999999999999644332 345577788888888766665542334 22
Q ss_pred HHhh----------------hCCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 148 LEDE----------------YGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 148 l~~~----------------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
+.+. -.|-.. +....+.++.+.+++ +..-...+.|-..+
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~---P~~~~~lv~~lk~~~-~~pi~~H~Hnt~Gl 211 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLK---PYAAYELVSRIKKRV-DVPLHLHCHATTGL 211 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcC---HHHHHHHHHHHHHhc-CCeEEEEECCCCch
Confidence 2110 134445 344555556666666 33334556676653
No 90
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=58.79 E-value=62 Score=32.12 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=51.5
Q ss_pred HHHHHcCCCEEEecc--cccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHH
Q 013298 86 KLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKD 163 (446)
Q Consensus 86 ~l~~~lG~~~~R~si--~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~ 163 (446)
+.+++.|++++=++. .-....|.-.|.............|..|+++|++++|++--+.-... ..+...++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~~ 91 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSADQ 91 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHHH
Confidence 567788999887664 22333332112111111234567899999999999998843321110 013457888
Q ss_pred HHHHHHHHHHHhc
Q 013298 164 FTAYADVCFREFG 176 (446)
Q Consensus 164 f~~ya~~~~~~~~ 176 (446)
|++....+.+.|+
T Consensus 92 ~~~a~~~~i~~y~ 104 (294)
T cd06543 92 LAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888886
No 91
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=58.45 E-value=30 Score=35.38 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEec
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
++|++.+.+.|++.+|+.++-|.+.-... +.-.++.++...+.|..++++|+++.++.-
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 89999999999999999997765432221 222356788899999999999999887764
No 92
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=57.69 E-value=48 Score=37.91 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=43.9
Q ss_pred hhchHHHHHHHHHcCCCEEEecccc---------------cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe--c
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSISW---------------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--H 140 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si~W---------------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~ 140 (446)
+....+-+..+++||++++=+|--. .+|.|+- | +.+-+++++++++++||++|+++ .
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G-----GEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4557888999999999998766533 3444442 2 24558899999999999999986 4
Q ss_pred CC
Q 013298 141 HL 142 (446)
Q Consensus 141 h~ 142 (446)
|.
T Consensus 93 H~ 94 (879)
T PRK14511 93 HM 94 (879)
T ss_pred cc
Confidence 54
No 93
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=57.41 E-value=34 Score=33.53 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEec-CCCCcHhHHhhhCCCCChH
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLH-HLDLPQALEDEYGGWINRM 159 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-h~~~P~~l~~~~gg~~~~~ 159 (446)
++|++++.+.|++.+++.++=|...-... +.--++.++...+.+..++++|+++.+++. .|+.|. ++-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~--- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV--- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC---
Confidence 78999999999999999986554322211 333356788999999999999999998885 355542 2222
Q ss_pred hHHHHHHHHHHHHH
Q 013298 160 IVKDFTAYADVCFR 173 (446)
Q Consensus 160 ~~~~f~~ya~~~~~ 173 (446)
.++.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 36677777777654
No 94
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=56.78 E-value=83 Score=31.44 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCC----CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCC---CCcHhHHhhh
Q 013298 82 KEDVKLMADTGLD--AYRFSISWSRLIPNG----RGPVNPKGLQYYNNLINELISYGIQPHVTLHHL---DLPQALEDEY 152 (446)
Q Consensus 82 ~~Di~l~~~lG~~--~~R~si~W~ri~P~~----~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~~~~ 152 (446)
.+-++.+++.|+. ++=+++.|......+ .=.+|++.+.--+++|+.|+++|+++++.+..+ +.|..-+...
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 4556667776654 566666675443211 122455555556789999999999999988655 3333211110
Q ss_pred ----------------------C---CCCChHhHHHHHHHHHHHHHHhcCcce-EEEecCCCcee
Q 013298 153 ----------------------G---GWINRMIVKDFTAYADVCFREFGDRVS-YWTTVNEPNGF 191 (446)
Q Consensus 153 ----------------------g---g~~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~~~ 191 (446)
+ .++||+..+.|.+..+.+ ... -|+ +|.=+|||.++
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~--Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQ--GVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhC--CccEEEecCCCcccc
Confidence 1 245888888888777665 223 344 47788999753
No 95
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=56.58 E-value=44 Score=37.96 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=44.3
Q ss_pred hhchHHHHHHHHHcCCCEEEecccccccccCCCC-------CCChh--hHHHHHHHHHHHHHCCCEEEEEe--cCCC
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNPK--GLQYYNNLINELISYGIQPHVTL--HHLD 143 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vtL--~h~~ 143 (446)
+....+-+.-+++||++++=+|--+.-.-....| .+|++ +.+-+++++++++++||.+|+++ .|..
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 3456888999999999999777644321111001 12221 24557899999999999999986 5643
No 96
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=56.55 E-value=75 Score=31.76 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCC--CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCC---cHhHHhh---
Q 013298 82 KEDVKLMADTGLD--AYRFSISWSRLIPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL---PQALEDE--- 151 (446)
Q Consensus 82 ~~Di~l~~~lG~~--~~R~si~W~ri~P~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~l~~~--- 151 (446)
++-++.+++.|+. ++=+++.|.. ..+ .=.+|++.+.--.++|+.|+++|+++++.+.-+-. +.+-.-+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g 104 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWP--KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKG 104 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhc--CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCC
Confidence 4555666666554 4444443321 111 12345555555679999999999999987754422 2111100
Q ss_pred ------h-----------CC---CCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCcee
Q 013298 152 ------Y-----------GG---WINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (446)
Q Consensus 152 ------~-----------gg---~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 191 (446)
. ++ ++||+.++.|.+..+......| ---+|+=+|||..+
T Consensus 105 ~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~Ep~~~ 163 (319)
T cd06591 105 YLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKG-VDAWWLDAAEPEYS 163 (319)
T ss_pred EEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCC-CcEEEecCCCCCcc
Confidence 0 12 4578777777665554433343 24457889999864
No 97
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=56.25 E-value=23 Score=36.19 Aligned_cols=92 Identities=13% Similarity=0.238 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC---CCCChhhHHHHHHHHHHHHHCCCEEE-EEecCCCCcHhHHhhhCCCCC
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGR---GPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWIN 157 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~---g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~ 157 (446)
++.++.|+++|++.+-+++ ..+-++-. |+.. ..+-..+.|+.+++.|+..+ +++ =+++|. .+
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg---------qt 164 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDL-MFGLPN---------QT 164 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEe-ecCCCC---------CC
Confidence 6789999999999555554 44433211 3221 24567789999999999744 444 235553 22
Q ss_pred hHhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
.+.|.+-.+.+.+.=.+++..+...-+|+.
T Consensus 165 ---~e~~~~~l~~~~~l~~~~is~y~l~~~pgT 194 (374)
T PRK05799 165 ---LEDWKETLEKVVELNPEHISCYSLIIEEGT 194 (374)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEeccEecCCC
Confidence 455555555555433356666554457764
No 98
>PRK09505 malS alpha-amylase; Reviewed
Probab=56.00 E-value=35 Score=38.04 Aligned_cols=63 Identities=17% Similarity=0.328 Sum_probs=43.1
Q ss_pred hHHHHHHHHHcCCCEEEecccccccc-----------cC-C-CC-------CCChh--hHHHHHHHHHHHHHCCCEEEEE
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLI-----------PN-G-RG-------PVNPK--GLQYYNNLINELISYGIQPHVT 138 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~-----------P~-~-~g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vt 138 (446)
..+-++.+++||++++=++--...+. |. + .| .+|+. ..+-++++|+++.++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 56668899999999999886554431 10 0 01 12221 3456889999999999999998
Q ss_pred e--cCCC
Q 013298 139 L--HHLD 143 (446)
Q Consensus 139 L--~h~~ 143 (446)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 6 4543
No 99
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=55.76 E-value=57 Score=33.13 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=44.0
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 85 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 85 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
++.++++|.+++-+-+-|. |+....+|.+.++...++.++|.+.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5779999999999999888 553234578889999999999999999998864
No 100
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=55.26 E-value=65 Score=32.59 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=63.1
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHH--HHHHHHHHHCCCEEEEEecCCCCcH--------hH
Q 013298 81 YKEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYY--NNLINELISYGIQPHVTLHHLDLPQ--------AL 148 (446)
Q Consensus 81 ~~~Di~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y--~~~i~~l~~~gi~p~vtL~h~~~P~--------~l 148 (446)
.++-++.+++.|+. ++=+++.|..-. +.-.+|++.+.-- +++|+.|+++|++.++.+..+-.+. .-
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~~--~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~ 103 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDRR--RDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYD 103 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccCc--cceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHH
Confidence 34555666666655 333444554321 1122343333334 7999999999999999886553332 11
Q ss_pred Hh-hh--------------------C---CCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 149 ED-EY--------------------G---GWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 149 ~~-~~--------------------g---g~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
.. +. + .++||+.++.|....+.+....| ---+|.=+|||..
T Consensus 104 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~Ep~~ 168 (339)
T cd06602 104 RGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP-FDGLWIDMNEPSN 168 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC-CcEEEecCCCCch
Confidence 10 00 1 25688888888777776665554 2445788899974
No 101
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=54.92 E-value=1e+02 Score=30.12 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCEEEecccccccccCC-CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCC
Q 013298 83 EDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHL 142 (446)
Q Consensus 83 ~Di~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~ 142 (446)
.+++++++.|++.+|+.++=|-..-.. .+.-.++.++...+.++.+++.|+++.++..+|
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 689999999999999987544332111 133335678899999999999999999876655
No 102
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=54.66 E-value=40 Score=34.67 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEec
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
++|++.+.+.|++.+|++++-|.+.-... +.--++.++...+.+..+++.|+++.++..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 88999999999999999997766533221 333466788899999999999999998753
No 103
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=54.27 E-value=82 Score=30.82 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=49.5
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHh
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMI 160 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 160 (446)
-++|+++..+.|++.+|+++..+. ++...+.++.+++.|+++.+++.--+ ++ +-.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~~---~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTG---------SP---VHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecC---------CC---CCC
Confidence 488999999999999999864433 45677899999999999987663111 11 223
Q ss_pred HHHHHHHHHHHHHH
Q 013298 161 VKDFTAYADVCFRE 174 (446)
Q Consensus 161 ~~~f~~ya~~~~~~ 174 (446)
.+.+.++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~ 161 (275)
T cd07937 148 LEYYVKLAKELEDM 161 (275)
T ss_pred HHHHHHHHHHHHHc
Confidence 56777777776543
No 104
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=53.86 E-value=64 Score=32.58 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=64.1
Q ss_pred hHHHHHHHHHcCCCE--EEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCC-----cHhHHhh--
Q 013298 81 YKEDVKLMADTGLDA--YRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL-----PQALEDE-- 151 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~--~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~-----P~~l~~~-- 151 (446)
..+-++.+++.|+.. +=+++.|..-. +.=.+|++.+.--+++|+.|+++|++.++.++.+-. |..-...
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~--~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~ 103 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTDGK--RYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDK 103 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhCCC--CceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHC
Confidence 345556666666553 33333332110 001234444434568999999999999988875532 2211110
Q ss_pred ----------------------hCCCCChHhHHHHHHHHHHHHHHhc-CcceEEEecCCCcee
Q 013298 152 ----------------------YGGWINRMIVKDFTAYADVCFREFG-DRVSYWTTVNEPNGF 191 (446)
Q Consensus 152 ----------------------~gg~~~~~~~~~f~~ya~~~~~~~~-~~v~~w~t~NEp~~~ 191 (446)
.-.+.||+.++.|.+..+.+....+ +-.-.|+=+|||.++
T Consensus 104 g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f 166 (339)
T cd06603 104 GYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVF 166 (339)
T ss_pred CeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCcccc
Confidence 0125689999999888877655332 235678999999865
No 105
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=52.94 E-value=1.4e+02 Score=30.10 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe--cCCCCcHhHH
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HHLDLPQALE 149 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~h~~~P~~l~ 149 (446)
.+|++.+.+.|++.+|+....+.. +-..+.|..+++.|+++.+.+ .|...|..+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~ 146 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLA 146 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHH
Confidence 689999999999999988644332 235689999999999998887 4444455443
No 106
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=52.65 E-value=1e+02 Score=31.37 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=56.0
Q ss_pred HHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHH
Q 013298 88 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAY 167 (446)
Q Consensus 88 ~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y 167 (446)
..+.|+..+|+. + |.+-.. -+..+.+++.++++|+-.=+...|-.++..+.++||+-+-+..++--.++
T Consensus 97 a~~~G~~~iRIN---------P-GNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 97 AAEAGADALRIN---------P-GNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHHhCCCEEEEC---------C-CCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 347799999876 4 655320 24678999999999999999999999999999988664445566777777
Q ss_pred HHHH
Q 013298 168 ADVC 171 (446)
Q Consensus 168 a~~~ 171 (446)
++.+
T Consensus 166 ~~~l 169 (360)
T PRK00366 166 AKIL 169 (360)
T ss_pred HHHH
Confidence 7665
No 107
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=52.60 E-value=92 Score=31.52 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=62.8
Q ss_pred ccchhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhh
Q 013298 73 VACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEY 152 (446)
Q Consensus 73 ~a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~ 152 (446)
+|.=|++ |+--+. ..+.|+..+|+. + |.+-. -+..+.+++.++++|+-.=+...|-.++..+.++|
T Consensus 76 VADIHFd-~~lAl~-a~~~g~dkiRIN---------P-GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ky 141 (346)
T TIGR00612 76 VADIHFD-YRLAAL-AMAKGVAKVRIN---------P-GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKY 141 (346)
T ss_pred EEeeCCC-cHHHHH-HHHhccCeEEEC---------C-CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHc
Confidence 4555665 343333 346799999987 4 55542 35678999999999999999999999999999988
Q ss_pred CCCCChHhHHHHHHHHHHH
Q 013298 153 GGWINRMIVKDFTAYADVC 171 (446)
Q Consensus 153 gg~~~~~~~~~f~~ya~~~ 171 (446)
|+-+.+..++--.++++.+
T Consensus 142 g~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 142 GDATAEAMVQSALEEAAIL 160 (346)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 7655555667777777664
No 108
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=52.49 E-value=54 Score=37.14 Aligned_cols=100 Identities=22% Similarity=0.343 Sum_probs=64.3
Q ss_pred cCCCEEEeccc-ccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCC---CCcHhHHhh---------------
Q 013298 91 TGLDAYRFSIS-WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL---DLPQALEDE--------------- 151 (446)
Q Consensus 91 lG~~~~R~si~-W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~~~--------------- 151 (446)
+=+.++++++. |.+ ..+.-.+|+.-+---+.+|+.|++.||+.++-+... +.|..-+..
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 45679999995 886 222234555555556699999999999999988542 333322111
Q ss_pred ---------hCCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCceeee
Q 013298 152 ---------YGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAM 193 (446)
Q Consensus 152 ---------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~ 193 (446)
.-.++||+.++++.+....-...+| -.-+|.=+|||.+...
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~ 421 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDG 421 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCccccc
Confidence 0125689999998873333233333 3556888999987643
No 109
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=52.21 E-value=32 Score=38.77 Aligned_cols=94 Identities=14% Similarity=0.241 Sum_probs=57.6
Q ss_pred hhhch-HHHHHHHHHcCCCEEEecccccc---------------cccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEec
Q 013298 77 EYHKY-KEDVKLMADTGLDAYRFSISWSR---------------LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 77 ~y~~~-~~Di~l~~~lG~~~~R~si~W~r---------------i~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
.|.-. ++-+..+|+||+|++-+.--... +.|.- |. .+-++++|++|.++||++|+++-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-Gt-----p~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-GT-----PEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 44443 44489999999999987643221 11111 22 23477999999999999999874
Q ss_pred --CCCC-------------cHhHHhhhCC----C-------CChHhHHHHHHHHHHHHHHhc
Q 013298 141 --HLDL-------------PQALEDEYGG----W-------INRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 141 --h~~~-------------P~~l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~~ 176 (446)
|+.- +.++.....| | .++++.+.+.+-++.-+++|+
T Consensus 322 ~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 322 HSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 1222211011 2 246677777777777777774
No 110
>PRK14705 glycogen branching enzyme; Provisional
Probab=51.87 E-value=1.1e+02 Score=36.54 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=55.8
Q ss_pred HHH-HHHHHHcCCCEEEecc--------ccccccc------CCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEe--cCCC
Q 013298 82 KED-VKLMADTGLDAYRFSI--------SWSRLIP------NGR-GPVNPKGLQYYNNLINELISYGIQPHVTL--HHLD 143 (446)
Q Consensus 82 ~~D-i~l~~~lG~~~~R~si--------~W~ri~P------~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~h~~ 143 (446)
.+. ++.+|+||++++=+.- +|- -.| ++. |. .+=++.+|++|.++||.+|+++ .|+.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt-----~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGH-----PDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 344 6899999999997653 231 111 111 22 3347799999999999999986 4652
Q ss_pred CcHhHHhh----------------hCC-------CCChHhHHHHHHHHHHHHHHhc
Q 013298 144 LPQALEDE----------------YGG-------WINRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 144 ~P~~l~~~----------------~gg-------~~~~~~~~~f~~ya~~~~~~~~ 176 (446)
.-.|.... +.. +.++++.+.+.+=+..-+++|+
T Consensus 842 ~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 842 KDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 21121100 011 2356777888888888888885
No 111
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=51.72 E-value=58 Score=34.43 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCc
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P 145 (446)
++|++.+.+.|++.+|+.++-+.+. -..+.|+.+++.|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 6677999999999999997655441 25568999999999988888765555
No 112
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=51.30 E-value=49 Score=31.48 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=42.5
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCC--CCCChhhHHHHHHHHHHHHHCCCEEEEEe-cCCCCc
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTL-HHLDLP 145 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtL-~h~~~P 145 (446)
+-+++++=++++++||.+.+++..... |... .......++..+++.+.+.+.||...+=. .+++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 446677889999999999998654321 1110 11122344667888888999999987743 444444
No 113
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=50.49 E-value=79 Score=31.77 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=48.4
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCC
Q 013298 85 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL 144 (446)
Q Consensus 85 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~ 144 (446)
.+.+|++|.++..|=+-|. |++...+|....++.+++.++|++.||--++-+..++.
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~ 167 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDE 167 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccC
Confidence 5889999999999988877 55444588888999999999999999999988776544
No 114
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=50.48 E-value=81 Score=31.78 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCC
Q 013298 84 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL 144 (446)
Q Consensus 84 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~ 144 (446)
+.+.+|++|.++..|=+-|. |++.-.+|....++.+++.++|++.||--++-+..++.
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~ 169 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDE 169 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 56899999999999988877 55445688888999999999999999999998876644
No 115
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=50.35 E-value=1e+02 Score=30.74 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCC-----cHhHHhh---
Q 013298 82 KEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL-----PQALEDE--- 151 (446)
Q Consensus 82 ~~Di~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~-----P~~l~~~--- 151 (446)
.+-++.+++.++. ++=+++.|..- .+.-.+|++.+.--.++|+.|+++|++.++.+.-+-. |......
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~ 104 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMDS--YRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKG 104 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhCC--CCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCC
Confidence 4445555655554 44444455431 1112345555555678999999999998887754422 2221110
Q ss_pred ---------------------hCCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 152 ---------------------YGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 152 ---------------------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
.-.|+||+.++.|.+..+.+....| -.-+|+=+|||..
T Consensus 105 ~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~g-vdg~w~D~~Ep~~ 163 (317)
T cd06600 105 KFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQG-VDGIWLDMNEPSD 163 (317)
T ss_pred EEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCC-CceEEeeCCCCcc
Confidence 0125789999998887777655444 2445788899974
No 116
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=49.84 E-value=54 Score=28.48 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCc
Q 013298 117 GLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDR 178 (446)
Q Consensus 117 ~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~ 178 (446)
..+=+.-+++.|++.|++|++.+.- -.+.|.. +-| .+++..+.|.+-.+.+++++|-+
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred cHHHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 3445678999999999999999853 2345553 455 46667788888888888888853
No 117
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=49.22 E-value=64 Score=39.64 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=44.9
Q ss_pred hhchHHHHHHHHHcCCCEEEeccccc---------------ccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe--c
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--H 140 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~ 140 (446)
.....+-+..+++||++++=+|--+. +|.|+- | +.+-+++++++|+++||++|+++ .
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G-----GEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 45577889999999999997765554 333332 2 34457899999999999999987 5
Q ss_pred CCC
Q 013298 141 HLD 143 (446)
Q Consensus 141 h~~ 143 (446)
|..
T Consensus 831 H~~ 833 (1693)
T PRK14507 831 HMG 833 (1693)
T ss_pred ccC
Confidence 653
No 118
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=47.86 E-value=50 Score=32.79 Aligned_cols=63 Identities=16% Similarity=0.367 Sum_probs=45.7
Q ss_pred chHHHHHHHHHcCCCEEEeccc----ccc---cccC------------CCCCCChhhHHHHHHHHHHHHHCCCEEEEEec
Q 013298 80 KYKEDVKLMADTGLDAYRFSIS----WSR---LIPN------------GRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~----W~r---i~P~------------~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
-.++-|+.|+..++|.+.+-++ |+- ..|+ +.|.+.++. .+++++.++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec-
Confidence 4577799999999998877665 521 1222 115677666 4599999999999999877
Q ss_pred CCCCcHhH
Q 013298 141 HLDLPQAL 148 (446)
Q Consensus 141 h~~~P~~l 148 (446)
|+|.-.
T Consensus 93 --D~PGH~ 98 (303)
T cd02742 93 --DMPGHS 98 (303)
T ss_pred --cchHHH
Confidence 677654
No 119
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.49 E-value=2.2e+02 Score=27.50 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEec
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
.+|++..++.|++.+|+..+-+.+ .-..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998766543 2356789999999999998883
No 120
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=46.40 E-value=35 Score=40.75 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=41.4
Q ss_pred hhhhchH--HHHHHHHHcCCCEEEecccccccccC-----C-C---C-------CCCh----hhHHHHHHHHHHHHHCCC
Q 013298 76 DEYHKYK--EDVKLMADTGLDAYRFSISWSRLIPN-----G-R---G-------PVNP----KGLQYYNNLINELISYGI 133 (446)
Q Consensus 76 d~y~~~~--~Di~l~~~lG~~~~R~si~W~ri~P~-----~-~---g-------~~n~----~~~~~y~~~i~~l~~~gi 133 (446)
+-|.... +.|+.+|+||++++=+.--.....-. + . | .++. ...+=++++|++|.++||
T Consensus 182 Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI 261 (1221)
T PRK14510 182 GTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGI 261 (1221)
T ss_pred cHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCC
Confidence 4455555 66889999999999775432221100 0 0 0 0111 135568899999999999
Q ss_pred EEEEEe
Q 013298 134 QPHVTL 139 (446)
Q Consensus 134 ~p~vtL 139 (446)
++|+++
T Consensus 262 ~VILDv 267 (1221)
T PRK14510 262 AVILDV 267 (1221)
T ss_pred EEEEEE
Confidence 999986
No 121
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=46.12 E-value=79 Score=31.96 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=46.8
Q ss_pred CChhhHHHHHHHHHHHHHCCCEEEEEecCC-CCcHhHHh--hhCCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCc
Q 013298 113 VNPKGLQYYNNLINELISYGIQPHVTLHHL-DLPQALED--EYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (446)
Q Consensus 113 ~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~-~~P~~l~~--~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 189 (446)
+|++.+.--+++++.|++.|++.++.+.-+ ..-..... ..-.|.||+.++.+.+..+.+.+ .| -.-+|+=+|||.
T Consensus 58 ~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~ 135 (332)
T cd06601 58 TNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPA 135 (332)
T ss_pred ecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcc
Confidence 343333334689999999999988866422 10000000 01236788888877666554432 23 233688999999
Q ss_pred eeee
Q 013298 190 GFAM 193 (446)
Q Consensus 190 ~~~~ 193 (446)
++..
T Consensus 136 ~~~~ 139 (332)
T cd06601 136 IMPS 139 (332)
T ss_pred cccC
Confidence 7654
No 122
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=45.73 E-value=79 Score=34.63 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=60.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCc----HhHHhh-----
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP----QALEDE----- 151 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P----~~l~~~----- 151 (446)
-++|++++.+.|++.+|+..+.+.+ +-....|+.++++|+.+.+++++-+.| ..+.+-
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 3556899999999999999765543 235678889999999999887765555 222110
Q ss_pred -----------hCCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 152 -----------YGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 152 -----------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
-.|...| ....+..+.+.++++ ..-...+.|-..+
T Consensus 160 ~~Gad~I~i~Dt~G~~~P---~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTP---KAAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HcCCCEEEECCCCCCcCH---HHHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 1445554 445556666666665 2334566776643
No 123
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=44.96 E-value=59 Score=36.36 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHHHHHcCCCEEEecccccccc----------------cCCCCCCChh-----hHHHHHHHHHHHHHCCCEEEEEe
Q 013298 85 VKLMADTGLDAYRFSISWSRLI----------------PNGRGPVNPK-----GLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 85 i~l~~~lG~~~~R~si~W~ri~----------------P~~~g~~n~~-----~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
|+-+|+||++++=+.---.-.. |..--.++.. .++-+++||++|.++||++|+++
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 8899999999998765221110 0000011111 24568899999999999999986
No 124
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.90 E-value=1.9e+02 Score=28.79 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=62.5
Q ss_pred hHHHHHHHHHcCCCE--EEecccccccccCC--CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCC---cHhHHhhh-
Q 013298 81 YKEDVKLMADTGLDA--YRFSISWSRLIPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL---PQALEDEY- 152 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~--~R~si~W~ri~P~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~l~~~~- 152 (446)
..+-++.+++.|+.. +=+.+.|....-.. .-.+|.+.+.--+++|+.|+++|++.++.++-+-. |..-....
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 345566777777653 33344454431100 01344444444669999999999999988765532 22111100
Q ss_pred --------C----------------CCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 153 --------G----------------GWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 153 --------g----------------g~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
| .++||+..+.|.+..+......| -.-+|+=+|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 0 13578888887776655544443 2345788899974
No 125
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=44.75 E-value=67 Score=31.19 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=52.7
Q ss_pred HHHHHHHHHcC----CCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCC
Q 013298 82 KEDVKLMADTG----LDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWI 156 (446)
Q Consensus 82 ~~Di~l~~~lG----~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 156 (446)
.+|++++.+.| ++.+|+.++-+.+.-... +.=.++.++...+.+..+++.|+++.++..+ .+-.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~~ 140 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATRT 140 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCCC
Confidence 78999999999 999999876554422111 2222346788889999999999998765532 2222
Q ss_pred ChHhHHHHHHHHHHHHH
Q 013298 157 NRMIVKDFTAYADVCFR 173 (446)
Q Consensus 157 ~~~~~~~f~~ya~~~~~ 173 (446)
+ ++.+.+.++.+.+
T Consensus 141 ~---~~~~~~~~~~~~~ 154 (268)
T cd07940 141 D---LDFLIEVVEAAIE 154 (268)
T ss_pred C---HHHHHHHHHHHHH
Confidence 2 5666667766643
No 126
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=44.37 E-value=2e+02 Score=29.11 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecC
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 141 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h 141 (446)
.+|++...+.|++.+|+....+.. +-..+.|+.+++.|+++.+++..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 589999999999999998754443 23568999999999999998853
No 127
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=43.94 E-value=1.6e+02 Score=30.40 Aligned_cols=51 Identities=12% Similarity=0.324 Sum_probs=40.7
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
..|++||++++++|++.|=+.|- . + .... .+....+++.+.+.|.+.++++
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig--~--~---d~~~---~~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG--S--S---DSWQ---PDQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc--c--C---Cccc---HHHHHHHHHHHHhcCCEEEEEe
Confidence 56899999999999999999885 1 1 2233 3556689999999999988877
No 128
>PLN02389 biotin synthase
Probab=43.22 E-value=75 Score=32.78 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=42.8
Q ss_pred hchHHHHHHHHHcCCCEEEecccccc-cccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~r-i~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
..-+|.++.||++|++.|-.+++=++ +.|+-...-+ ++..-+.++.+++.||++..++
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s---~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRS---YDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCC---HHHHHHHHHHHHHcCCeEeEEE
Confidence 35689999999999999999886222 4443212223 6678899999999999987765
No 129
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=42.51 E-value=47 Score=34.85 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCEEEecccccccccCC------CCCCCh--hhHHHHHHHHHHHHHCCCEEEEEe--cC
Q 013298 83 EDVKLMADTGLDAYRFSISWSRLIPNG------RGPVNP--KGLQYYNNLINELISYGIQPHVTL--HH 141 (446)
Q Consensus 83 ~Di~l~~~lG~~~~R~si~W~ri~P~~------~g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL--~h 141 (446)
+-++.+++||++++=++---..+...- -..+|+ -.++-.+++|+++.++||++++++ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 567899999999985543211111110 011221 236778899999999999999987 55
No 130
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=42.47 E-value=4e+02 Score=27.40 Aligned_cols=89 Identities=21% Similarity=0.412 Sum_probs=50.7
Q ss_pred HcCCCEEEecccccccccCCCCCCChhhHHHHHHHH--HHHHHCCCEEEEEecCCCCcHhHHhh---hCC---CCChHhH
Q 013298 90 DTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLI--NELISYGIQPHVTLHHLDLPQALEDE---YGG---WINRMIV 161 (446)
Q Consensus 90 ~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i--~~l~~~gi~p~vtL~h~~~P~~l~~~---~gg---~~~~~~~ 161 (446)
++|++-.|+.|.=.+.--. |..| .+|+++= ...+..|++++.+ -|.-|.|.-.. -|| -+. .
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g~~d----~w~kels~Ak~~in~g~ivfAS--PWspPa~Mktt~~~ngg~~g~Lk---~ 145 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--GSAD----NWYKELSTAKSAINPGMIVFAS--PWSPPASMKTTNNRNGGNAGRLK---Y 145 (433)
T ss_pred ccCceEEEEEecccccccC--CCcc----hhhhhcccchhhcCCCcEEEec--CCCCchhhhhccCcCCccccccc---h
Confidence 4788888888765554222 4555 2344432 2355677777765 47889887542 233 333 3
Q ss_pred HHHHHHHHHH---HHHh---cCcceEEEecCCCc
Q 013298 162 KDFTAYADVC---FREF---GDRVSYWTTVNEPN 189 (446)
Q Consensus 162 ~~f~~ya~~~---~~~~---~~~v~~w~t~NEp~ 189 (446)
+.++.||+.+ +..+ |--+..-.+-|||.
T Consensus 146 e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd 179 (433)
T COG5520 146 EKYADYADYLNDFVLEMKNNGVNLYALSVQNEPD 179 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCc
Confidence 4555555544 2333 33455556779998
No 131
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=41.76 E-value=62 Score=32.87 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCC-CChhhHHHHHHHHHHHHHCCCEEE-EEecCCCCcH
Q 013298 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQ 146 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si-~W~-ri~P~~~g~-~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~ 146 (446)
++.++.|+++|++.+.+++ +-+ ++...- |+ .+ .+-+.+.|+.+++.|+.++ ++| -+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~---~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHS---AKNIAPAIETALKSGIENISLDL-MYGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEec-cCCCCC
Confidence 6889999999999777776 232 232221 32 23 5567789999999999754 443 335553
No 132
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=41.01 E-value=1.1e+02 Score=31.94 Aligned_cols=72 Identities=19% Similarity=0.352 Sum_probs=50.8
Q ss_pred hhhchHHH-----HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhh
Q 013298 77 EYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE 151 (446)
Q Consensus 77 ~y~~~~~D-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 151 (446)
-|.+|.+| +++..+-|++.||+- ...| .++-...-|.+.++.|.....+++-=..|. +
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiF-----------DAlN--D~RNl~~ai~a~kk~G~h~q~~i~YT~sPv--H-- 153 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIF-----------DALN--DVRNLKTAIKAAKKHGAHVQGTISYTTSPV--H-- 153 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEec-----------hhcc--chhHHHHHHHHHHhcCceeEEEEEeccCCc--c--
Confidence 47777777 588999999999975 2333 245567889999999999999987544441 1
Q ss_pred hCCCCChHhHHHHHHHHHHHHH
Q 013298 152 YGGWINRMIVKDFTAYADVCFR 173 (446)
Q Consensus 152 ~gg~~~~~~~~~f~~ya~~~~~ 173 (446)
+++.|.++|+.+.+
T Consensus 154 --------t~e~yv~~akel~~ 167 (472)
T COG5016 154 --------TLEYYVELAKELLE 167 (472)
T ss_pred --------cHHHHHHHHHHHHH
Confidence 25666666666544
No 133
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=40.63 E-value=26 Score=29.63 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=27.6
Q ss_pred EEEeeCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHcC
Q 013298 343 IYVHENGLATPRHSSLEDISRVKYLHAYIGSVLDAVRNG 381 (446)
Q Consensus 343 I~ITENG~~~~~~~~~~D~~Ri~yl~~~l~~v~~Ai~dG 381 (446)
.+|+|.|++. |..+.+|-+.-..+++.||...
T Consensus 2 r~~iE~GmG~-------DlhGqD~TkAA~RAv~DAI~~n 33 (113)
T PF09585_consen 2 RLFIEMGMGN-------DLHGQDYTKAAVRAVRDAISHN 33 (113)
T ss_pred eEEEEecccc-------cccCCcHHHHHHHHHHHHHhhc
Confidence 6899999994 7788899999999999998754
No 134
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=40.58 E-value=74 Score=30.49 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=44.3
Q ss_pred cccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhc
Q 013298 99 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 99 si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 176 (446)
.+.|..+.++|.-.... .......+++.++++|+++++.+..+...... .-..++..++.|++=+-..+++|+
T Consensus 27 ~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~----~~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFT----AALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcch----hhhcCHHHHHHHHHHHHHHHHHhC
Confidence 33466665554211110 12346788999999999999998765443221 122467777777766666666664
No 135
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=40.33 E-value=20 Score=26.81 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=31.0
Q ss_pred cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCC
Q 013298 103 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL 142 (446)
Q Consensus 103 ~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~ 142 (446)
+++.|+. +.=.+++++..-+++..|.++|| +.+.|++-
T Consensus 19 s~l~p~~-~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE-GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc-ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5677876 55567899999999999999999 88777653
No 136
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=40.20 E-value=64 Score=32.62 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHH
Q 013298 83 EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVK 162 (446)
Q Consensus 83 ~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~ 162 (446)
.=|++|.+.|++-+=.|+ ..|++ -+...+..++++++.+++.|+++||+.. |.-|.. -||.- +.++
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S~-~~l~ 85 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNISL-DNLS 85 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCCh-HHHH
Confidence 336788888887665553 33333 2335789999999999999999999984 777753 44432 2344
Q ss_pred HHHH
Q 013298 163 DFTA 166 (446)
Q Consensus 163 ~f~~ 166 (446)
.|.+
T Consensus 86 ~f~e 89 (360)
T COG3589 86 RFQE 89 (360)
T ss_pred HHHH
Confidence 4443
No 137
>PRK12568 glycogen branching enzyme; Provisional
Probab=40.10 E-value=61 Score=36.39 Aligned_cols=94 Identities=15% Similarity=0.251 Sum_probs=57.5
Q ss_pred hhchHHH-HHHHHHcCCCEEEecc--------ccc-----ccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEe--c
Q 013298 78 YHKYKED-VKLMADTGLDAYRFSI--------SWS-----RLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL--H 140 (446)
Q Consensus 78 y~~~~~D-i~l~~~lG~~~~R~si--------~W~-----ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~ 140 (446)
|.-..+. |.-+|+||++++=+.- +|- -..|++. |. .+-++.+|++|.++||++|+++ .
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGS-----PDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4344444 6899999999986543 231 0111211 32 3457799999999999999986 4
Q ss_pred CCCCcH---------hHHh----h---hCCC-------CChHhHHHHHHHHHHHHHHhc
Q 013298 141 HLDLPQ---------ALED----E---YGGW-------INRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 141 h~~~P~---------~l~~----~---~gg~-------~~~~~~~~f~~ya~~~~~~~~ 176 (446)
|+.-.. .+.. + +..| .++++.+.+.+-+..-+++|+
T Consensus 343 H~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 343 HFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 542210 0110 0 1123 357777888888888888875
No 138
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.93 E-value=1.1e+02 Score=30.31 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=44.5
Q ss_pred chHHHHHHHHHcCCCEEEecc----cccccccCC---CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhH
Q 013298 80 KYKEDVKLMADTGLDAYRFSI----SWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQAL 148 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si----~W~ri~P~~---~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l 148 (446)
-.++=|++|+.+|+|.+-+=+ ++.. .|+- .|.+.++. ++++++.++++||++|-.+ ++|.-+
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 367889999999999887633 3322 2321 26788777 4599999999999999876 555443
No 139
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=39.43 E-value=1.4e+02 Score=29.83 Aligned_cols=109 Identities=14% Similarity=0.176 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCC-EEEeccc-c-ccccc-CCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCC
Q 013298 82 KEDVKLMADTGLD-AYRFSIS-W-SRLIP-NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWIN 157 (446)
Q Consensus 82 ~~Di~l~~~lG~~-~~R~si~-W-~ri~P-~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~ 157 (446)
++.+++|+++|++ .+-++++ - .++.- .-.-..+ .+-+.+.++.++++||.+.+.+.- ++|. ..-
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t---~~~~~~ai~~~~~~Gi~v~~~~i~-G~P~--------~se 184 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGST---FEDFIRAAELARKYGAGVKAYLLF-KPPF--------LSE 184 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCC---HHHHHHHHHHHHHcCCcEEEEEEe-cCCC--------CCh
Confidence 7889999999998 4666652 1 22221 1011234 456779999999999997776532 3442 112
Q ss_pred hHhHHHHHHHHHHHHHHhcCcceEEEecCCCceeeeccccccCCCC
Q 013298 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAMVGYDFGIAPP 203 (446)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~P 203 (446)
.++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 185 ~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 185 KEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 2567777777777664 35777776655566543333355566654
No 140
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.18 E-value=2.7e+02 Score=27.39 Aligned_cols=108 Identities=14% Similarity=0.213 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCC--EEEecccccccc-----cCC--CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCC-C-cH-h--
Q 013298 82 KEDVKLMADTGLD--AYRFSISWSRLI-----PNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD-L-PQ-A-- 147 (446)
Q Consensus 82 ~~Di~l~~~lG~~--~~R~si~W~ri~-----P~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~-~-P~-~-- 147 (446)
++=++.+++.|+. ++=+.+.|..-. .++ .=.+|++.+.-..++|+.|+++|++.++.++-.. . |. .
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y 107 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQY 107 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHH
Confidence 4445566665554 566666675421 011 1235555555567999999999999998875431 1 11 1
Q ss_pred --HHhhh-----------CCCCChHhHHHHHHHHHHHHHHhcCcce-EEEecCCCcee
Q 013298 148 --LEDEY-----------GGWINRMIVKDFTAYADVCFREFGDRVS-YWTTVNEPNGF 191 (446)
Q Consensus 148 --l~~~~-----------gg~~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~~~ 191 (446)
+.... ..++||+.++.|.+-........| |+ +|.=+|||...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G--idg~W~D~~E~~~~ 163 (292)
T cd06595 108 PEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG--VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC--CcEEEecCCCCccc
Confidence 11111 124566666554433333333333 44 57888999754
No 141
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=38.25 E-value=31 Score=29.28 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=27.2
Q ss_pred EEEeeCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc
Q 013298 343 IYVHENGLATPRHSSLEDISRVKYLHAYIGSVLDAVRN 380 (446)
Q Consensus 343 I~ITENG~~~~~~~~~~D~~Ri~yl~~~l~~v~~Ai~d 380 (446)
.+|+|.|++ .|..+.+|-+.-..+++.||..
T Consensus 2 rl~iEmGmG-------~DlhGqD~TkAA~RAvrDAI~h 32 (116)
T TIGR02058 2 ILFIEMGMG-------VDQHGQNITKAAMRAVRNAIAS 32 (116)
T ss_pred eEEEEeccc-------ccccCccHHHHHHHHHHHHHhh
Confidence 589999999 4788999999999999999873
No 142
>PLN02960 alpha-amylase
Probab=37.83 E-value=69 Score=36.64 Aligned_cols=95 Identities=11% Similarity=0.179 Sum_probs=59.2
Q ss_pred hhhhchHHH-HHHHHHcCCCEEEeccc--------c-------cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 76 DEYHKYKED-VKLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 76 d~y~~~~~D-i~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
..|.-..+. +..+|+||++++-+.-- | -.+.|.= |. .+=++.+|++|.++||++|+++
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gt-----p~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GT-----PDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 355555544 89999999999887532 1 1111111 22 2347799999999999999997
Q ss_pred --cCCCC--c--HhHHhh-------------hCCC-------CChHhHHHHHHHHHHHHHHhc
Q 013298 140 --HHLDL--P--QALEDE-------------YGGW-------INRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 140 --~h~~~--P--~~l~~~-------------~gg~-------~~~~~~~~f~~ya~~~~~~~~ 176 (446)
.|+.- + .+..+. +..| .++++.+.+.+-++.-++.|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45421 1 111110 0112 256777888888888888885
No 143
>PRK07094 biotin synthase; Provisional
Probab=37.62 E-value=1.1e+02 Score=30.53 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=39.8
Q ss_pred chHHHHHHHHHcCCCEEEeccc-c-cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 80 KYKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~-W-~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.-+++++.|+++|++.+-++++ - .++...-....+ .+.+.+.|+.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceE
Confidence 3478999999999999998884 2 233322111223 5667789999999999865443
No 144
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=37.47 E-value=1.1e+02 Score=29.29 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhc
Q 013298 118 LQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 118 ~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 176 (446)
.+...+.|..++++|+++++++.-+.....+ ....+++.++.|++-+..++++|+
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3556789999999999999999654432211 012445555666666666666665
No 145
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=37.40 E-value=1.1e+02 Score=30.82 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=44.8
Q ss_pred hchHHHHHHHHHcCCCEEEecc-----------cccccccCC---------CCCCChhhHHHHHHHHHHHHHCCCEEEEE
Q 013298 79 HKYKEDVKLMADTGLDAYRFSI-----------SWSRLIPNG---------RGPVNPKGLQYYNNLINELISYGIQPHVT 138 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si-----------~W~ri~P~~---------~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 138 (446)
...++-|+.|+..++|.+-+-+ .++.+-..+ .|.+.++. ++++++.++++||++|--
T Consensus 18 ~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~d---i~elv~yA~~rgI~vIPE 94 (329)
T cd06568 18 AEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQED---YKDIVAYAAERHITVVPE 94 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHH---HHHHHHHHHHcCCEEEEe
Confidence 3467789999999999776555 233332211 14567655 559999999999999987
Q ss_pred ecCCCCcHhH
Q 013298 139 LHHLDLPQAL 148 (446)
Q Consensus 139 L~h~~~P~~l 148 (446)
+ |+|.-.
T Consensus 95 i---D~PGH~ 101 (329)
T cd06568 95 I---DMPGHT 101 (329)
T ss_pred c---CCcHHH
Confidence 6 677654
No 146
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.35 E-value=1.3e+02 Score=31.27 Aligned_cols=110 Identities=17% Similarity=0.274 Sum_probs=66.9
Q ss_pred hchHHHHHHHHHcCCCE--EEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCC---CCc---HhHHh
Q 013298 79 HKYKEDVKLMADTGLDA--YRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL---DLP---QALED 150 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~--~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~---~~P---~~l~~ 150 (446)
....+-++.+++.|+.. +=++..|..-.. .-.+|++.+.-.+++++.|+++|++.++.++-+ +.+ ..-..
T Consensus 43 ~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~ 120 (441)
T PF01055_consen 43 DEVREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEA 120 (441)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhH
Confidence 34567778888888764 444445655322 135666666667899999999999998877543 222 11110
Q ss_pred h--------hCC----------------CCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCcee
Q 013298 151 E--------YGG----------------WINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (446)
Q Consensus 151 ~--------~gg----------------~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 191 (446)
+ ..| +.|++..+.|.+..+.+.+.+| ---+|+=+|||..+
T Consensus 121 ~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 121 KEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 0 122 6788888888887777666654 23457888999863
No 147
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=36.93 E-value=1.9e+02 Score=25.61 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcCCCEEEeccc-ccccccC-CCCCCChhhHHHHHHHHHHHHHCC-CEEEEEe
Q 013298 80 KYKEDVKLMADTGLDAYRFSIS-WSRLIPN-GRGPVNPKGLQYYNNLINELISYG-IQPHVTL 139 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~-W~ri~P~-~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL 139 (446)
.-++.++.|+++|++.+.+|++ ++.=.-+ -....+ .+.+.+.|+.+++.| +.+-+.+
T Consensus 98 ~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 98 LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 3378899999999999999985 5432111 111222 477889999999999 6655443
No 148
>PRK14706 glycogen branching enzyme; Provisional
Probab=36.77 E-value=2.8e+02 Score=30.81 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=52.4
Q ss_pred HHHHHcCCCEEEecccccccccCC-C-CC-------CCh--hhHHHHHHHHHHHHHCCCEEEEEe--cCCC---------
Q 013298 86 KLMADTGLDAYRFSISWSRLIPNG-R-GP-------VNP--KGLQYYNNLINELISYGIQPHVTL--HHLD--------- 143 (446)
Q Consensus 86 ~l~~~lG~~~~R~si~W~ri~P~~-~-g~-------~n~--~~~~~y~~~i~~l~~~gi~p~vtL--~h~~--------- 143 (446)
+.+|+||++++-+.--=. .|.. . |. ++. -..+=++.+|++|.++||++|+++ .|+.
T Consensus 175 ~ylk~lG~t~velmPv~e--~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVME--HPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchhc--CCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 679999999987653100 1111 0 10 010 013447799999999999999985 4542
Q ss_pred --CcHh-HHhhhC----CC-------CChHhHHHHHHHHHHHHHHhc
Q 013298 144 --LPQA-LEDEYG----GW-------INRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 144 --~P~~-l~~~~g----g~-------~~~~~~~~f~~ya~~~~~~~~ 176 (446)
.|.+ ..+... .| .++++.+.+.+=++.-++.|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 000001 12 257788888888888888885
No 149
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=35.87 E-value=3.3e+02 Score=28.26 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=59.4
Q ss_pred hchHHHHHHHHHcCCCEEEeccccccc-----------ccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEec-------
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRL-----------IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH------- 140 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri-----------~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~------- 140 (446)
....+-++.++++|++.+=+.--|..- .|+. .++- .| ...+++.+++.|+++=+=+-
T Consensus 58 ~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~kFP-~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 58 EKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-KKFP-NG---LKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-TTST-TH---HHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred HHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-hhhC-Cc---HHHHHHHHHHCCCeEEEEeccccccch
Confidence 344666788999999999888899643 3333 2231 24 55999999999999865331
Q ss_pred ---CCCCcHhHHhhhC-----C-------CCChHhHHHHHHHHHHHHHHhc
Q 013298 141 ---HLDLPQALEDEYG-----G-------WINRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 141 ---h~~~P~~l~~~~g-----g-------~~~~~~~~~f~~ya~~~~~~~~ 176 (446)
.-..|.|+....+ | ..+|++.+...+-...+++.+|
T Consensus 133 S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 133 SDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 1246888753101 1 2467788888877777777776
No 150
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=35.84 E-value=1.7e+02 Score=33.17 Aligned_cols=105 Identities=16% Similarity=0.341 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEec---CCCCcH----------
Q 013298 82 KEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HLDLPQ---------- 146 (446)
Q Consensus 82 ~~Di~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---h~~~P~---------- 146 (446)
++=++.++++|+. ..=..|.|-.-..+ =.+|+.......++++.|.++|++.++.+. +-+...
T Consensus 314 ~dvv~~~~~agiPld~~~~DiDyMd~ykD--FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~ 391 (805)
T KOG1065|consen 314 RDVVENYRAAGIPLDVIVIDIDYMDGYKD--FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKD 391 (805)
T ss_pred HHHHHHHHHcCCCcceeeeehhhhhcccc--eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhc
Confidence 3446778888877 55555555433222 346776677788999999999999999986 222220
Q ss_pred -hHHhh----------hCC------CCChHhHHHHHHHHHHHHHHhcCcce---EEEecCCCceee
Q 013298 147 -ALEDE----------YGG------WINRMIVKDFTAYADVCFREFGDRVS---YWTTVNEPNGFA 192 (446)
Q Consensus 147 -~l~~~----------~gg------~~~~~~~~~f~~ya~~~~~~~~~~v~---~w~t~NEp~~~~ 192 (446)
++.+. ..| ++|+++++.+ ...+++|.+.|. +|+-+|||..+.
T Consensus 392 v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww----~~~~~~fh~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 392 VLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW----LDELKRFHDEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred eeeecccCchhhhcccCCCcccccccCCchHHHHH----HHHHHhhcccCCccceEEECCCcccCC
Confidence 01000 012 4566555544 445668888877 599999998654
No 151
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=35.29 E-value=1e+02 Score=33.90 Aligned_cols=59 Identities=17% Similarity=0.355 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCEEEecccc--ccc-------------cc------CCCCCCCh----hhHHHHHHHHHHHHHCCCEEEEE
Q 013298 84 DVKLMADTGLDAYRFSISW--SRL-------------IP------NGRGPVNP----KGLQYYNNLINELISYGIQPHVT 138 (446)
Q Consensus 84 Di~l~~~lG~~~~R~si~W--~ri-------------~P------~~~g~~n~----~~~~~y~~~i~~l~~~gi~p~vt 138 (446)
-++-||+||++++=+.--- .-+ .| ++....|+ ..++-+++||++|.++||++|++
T Consensus 169 ~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilD 248 (605)
T TIGR02104 169 GLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMD 248 (605)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEE
Confidence 3899999999999875421 111 00 00000011 11456889999999999999998
Q ss_pred e--cCC
Q 013298 139 L--HHL 142 (446)
Q Consensus 139 L--~h~ 142 (446)
+ .|.
T Consensus 249 vV~NH~ 254 (605)
T TIGR02104 249 VVYNHT 254 (605)
T ss_pred EEcCCc
Confidence 6 454
No 152
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=35.04 E-value=1.5e+02 Score=30.18 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=54.0
Q ss_pred hHHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEE-EEecCCCCcHhHHhhhCCCCC
Q 013298 81 YKEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWIN 157 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si-~W-~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~ 157 (446)
=++.+++|+++|++.+-+++ +- .++...-....+ .+...+.|+.+++.|+..+ +.+ =+++|. .+
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg---------qt 165 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG---------QT 165 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC---------CC
Confidence 37889999999999777776 22 233322112233 4567789999999999743 333 235553 23
Q ss_pred hHhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
.+.+.+=.+.+.+.=.+.+..+...-+|..
T Consensus 166 ---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT 195 (377)
T PRK08599 166 ---IEDFKESLAKALALDIPHYSAYSLILEPKT 195 (377)
T ss_pred ---HHHHHHHHHHHHccCCCEEeeeceeecCCC
Confidence 334444444443322344555544456654
No 153
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=34.91 E-value=1.6e+02 Score=29.74 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcH
Q 013298 84 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQ 146 (446)
Q Consensus 84 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 146 (446)
+.+.+|++|.++..|=+-|.- +..-.+|....++.+++.++|+++||--++-+..+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~p---D~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYDV---DDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeCC---CCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 368999999999999887753 332457888899999999999999999999887775543
No 154
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=33.86 E-value=71 Score=31.47 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=47.2
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
-++|++...+.|++.+-+.++=|...-... +.=-++.++.+.+++..++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 379999999999999888876554433321 43456789999999999999999999988
No 155
>PRK09936 hypothetical protein; Provisional
Probab=33.45 E-value=3.5e+02 Score=26.93 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=44.6
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHh
Q 013298 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALED 150 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~ 150 (446)
.|++=++.++.+|+++. =+.|++.--+..|.-+ .+.-+.++.+.+.||++.|.|+- =|.|...
T Consensus 39 qWq~~~~~~~~~G~~tL--ivQWt~yG~~~fg~~~----g~La~~l~~A~~~Gl~v~vGL~~--Dp~y~q~ 101 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTL--VVQWTRYGDADFGGQR----GWLAKRLAAAQQAGLKLVVGLYA--DPEFFMH 101 (296)
T ss_pred HHHHHHHHHHHcCCcEE--EEEeeeccCCCcccch----HHHHHHHHHHHHcCCEEEEcccC--ChHHHHH
Confidence 45666789999999986 3579888111112222 46779999999999999999973 3566553
No 156
>PTZ00445 p36-lilke protein; Provisional
Probab=33.30 E-value=87 Score=29.67 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcHhHHh-hhCCCCChH---------hHHHHHHHHHHHH
Q 013298 119 QYYNNLINELISYGIQPHVTLHHLDLPQALED-EYGGWINRM---------IVKDFTAYADVCF 172 (446)
Q Consensus 119 ~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~-~~gg~~~~~---------~~~~f~~ya~~~~ 172 (446)
+--+.+++.|++.||+.+++ |+-+=+-. .-|||.++. ....|......+.
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~----D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~ 88 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIAS----DFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK 88 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEe----cchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH
Confidence 34568899999999999986 22222222 238999987 4455666555543
No 157
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.15 E-value=3e+02 Score=27.61 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCC-----CcHhHHhh---
Q 013298 82 KEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD-----LPQALEDE--- 151 (446)
Q Consensus 82 ~~Di~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~-----~P~~l~~~--- 151 (446)
.+-++.+++.|+. ++=+.+.|..-. +.-.+|++.+.--+++|+.|+++|++.++.+.-+- .|..-...
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~--~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g 104 (339)
T cd06604 27 REIADEFRERDIPCDAIYLDIDYMDGY--RVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLEND 104 (339)
T ss_pred HHHHHHHHHhCCCcceEEECchhhCCC--CceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCC
Confidence 4555556665554 344444454321 11123443333356899999999999987654331 22221110
Q ss_pred ------------------hC---CCCChHhHHHHHHHHHHHHHHhcCcce-EEEecCCCcee
Q 013298 152 ------------------YG---GWINRMIVKDFTAYADVCFREFGDRVS-YWTTVNEPNGF 191 (446)
Q Consensus 152 ------------------~g---g~~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~~~ 191 (446)
.+ .|+||+.++.|.+..+.+. .. .|+ +|+=+|||..+
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~--Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 105 YFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DL--GVDGIWNDMNEPAVF 163 (339)
T ss_pred eEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hC--CCceEeecCCCcccc
Confidence 01 3568888888877666554 23 344 47788999864
No 158
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=33.15 E-value=1.5e+02 Score=29.74 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=45.4
Q ss_pred chHHHHHHHHHcCCCEEEecc----cccc---cccCC------CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcH
Q 013298 80 KYKEDVKLMADTGLDAYRFSI----SWSR---LIPNG------RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQ 146 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si----~W~r---i~P~~------~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 146 (446)
..++=|+.|+..++|.+-+-+ +|.- -.|+- .|.+.++. ++++++.++++||++|.-+ |+|.
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~d---i~elv~yA~~rgI~vIPEI---d~PG 92 (311)
T cd06570 19 VIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQ---IREVVAYARDRGIRVVPEI---DVPG 92 (311)
T ss_pred HHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHH---HHHHHHHHHHcCCEEEEee---cCcc
Confidence 356678999999999777655 5542 23331 14577666 5599999999999999877 6775
Q ss_pred hH
Q 013298 147 AL 148 (446)
Q Consensus 147 ~l 148 (446)
-.
T Consensus 93 H~ 94 (311)
T cd06570 93 HA 94 (311)
T ss_pred ch
Confidence 43
No 159
>PTZ00445 p36-lilke protein; Provisional
Probab=33.01 E-value=93 Score=29.48 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCChh---------hHHHHHHHHHHHHHCCCEEEEEec
Q 013298 83 EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPK---------GLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 83 ~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~---------~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
.=++++++.|++.+=+.++=.-|.--..|..++. +=.-...++.+|+++||.++|..+
T Consensus 33 ~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 33 KFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 3468899999999999888776642211433332 334577899999999999988765
No 160
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.96 E-value=77 Score=30.46 Aligned_cols=62 Identities=6% Similarity=0.022 Sum_probs=41.1
Q ss_pred hhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEE
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 138 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 138 (446)
....++++-+++.+.+|.+++++........+.. ...-+..++.++++.+.+.++||+..+=
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 3556777888999999999999964322111111 1111334567788899999999977653
No 161
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=32.62 E-value=95 Score=31.51 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=43.6
Q ss_pred hchHHHHHHHHHcCCCEEEeccc----c-------cccccCC----CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCC
Q 013298 79 HKYKEDVKLMADTGLDAYRFSIS----W-------SRLIPNG----RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD 143 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~----W-------~ri~P~~----~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~ 143 (446)
...++-|+.|+..++|.+-+=+. | +.+-..+ .|.+.++. ++++|+.++++||++|.-+ |
T Consensus 18 ~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~d---i~eiv~yA~~rgI~vIPEI---D 91 (348)
T cd06562 18 DSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPED---VKEIVEYARLRGIRVIPEI---D 91 (348)
T ss_pred HHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHH---HHHHHHHHHHcCCEEEEec---c
Confidence 34567789999999998765442 2 2221111 13466655 5699999999999999877 6
Q ss_pred CcHhH
Q 013298 144 LPQAL 148 (446)
Q Consensus 144 ~P~~l 148 (446)
+|.-.
T Consensus 92 ~PGH~ 96 (348)
T cd06562 92 TPGHT 96 (348)
T ss_pred Cchhh
Confidence 77643
No 162
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.59 E-value=1.4e+02 Score=28.12 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=50.4
Q ss_pred HHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHH
Q 013298 86 KLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDF 164 (446)
Q Consensus 86 ~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f 164 (446)
+.+++.|++.+|+.++=+....... +.--++.++...++++.+++.|+++.+++-+.. ..+ ++.+
T Consensus 74 ~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-----------~~~---~~~~ 139 (237)
T PF00682_consen 74 EAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS-----------RTD---PEEL 139 (237)
T ss_dssp HHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------GSS---HHHH
T ss_pred HhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------ccc---HHHH
Confidence 3455799999999986555333321 333356788889999999999999988875431 122 4566
Q ss_pred HHHHHHHHHH
Q 013298 165 TAYADVCFRE 174 (446)
Q Consensus 165 ~~ya~~~~~~ 174 (446)
.++++.+.+.
T Consensus 140 ~~~~~~~~~~ 149 (237)
T PF00682_consen 140 LELAEALAEA 149 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666666544
No 163
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=32.58 E-value=89 Score=30.73 Aligned_cols=66 Identities=18% Similarity=0.405 Sum_probs=46.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCC
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWIN 157 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~ 157 (446)
.++=+++++++||..+.++.- +.=+|+.+++|++++..+.++.|- |.+|--..|.-+...|-...+
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~Lm--vnfHg~~kPtG~~RTyPN~mT 173 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKLM--VNFHGATKPTGLRRTYPNLMT 173 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT-E--EEETTS---TTHHHCSTTEEE
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCcE--EEecCCcCCCcccccCccHHH
Confidence 367799999999999998841 345689999999999999999874 456655567666554433333
No 164
>PRK12677 xylose isomerase; Provisional
Probab=32.54 E-value=4.2e+02 Score=27.29 Aligned_cols=89 Identities=18% Similarity=0.133 Sum_probs=52.7
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEE-EEecCCCCcHhHHhhhCCCCChH
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWINRM 159 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~~~ 159 (446)
.+|-++.++++|+..+=+.. ..+.|-. -.... .-+..+++-+.+.+.||++. ++...|..|.+- .|++.+++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~-~~~~~-~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~---~g~lts~d 105 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG-ATDAE-RDRIIKRFKKALDETGLVVPMVTTNLFTHPVFK---DGAFTSND 105 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC-CChhh-hHHHHHHHHHHHHHcCCeeEEEecCCCCCcccc---CCcCCCCC
Confidence 58889999999999886632 2233432 11111 11346788888999999966 555555555442 37887743
Q ss_pred --hHHHHHHHHHHH---HHHhc
Q 013298 160 --IVKDFTAYADVC---FREFG 176 (446)
Q Consensus 160 --~~~~f~~ya~~~---~~~~~ 176 (446)
..+.-.++.+.+ +..+|
T Consensus 106 ~~~R~~Ai~~~~r~IdlA~eLG 127 (384)
T PRK12677 106 RDVRRYALRKVLRNIDLAAELG 127 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 333324444433 44555
No 165
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=32.47 E-value=28 Score=33.71 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCceeeeccccccCCC
Q 013298 123 NLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAMVGYDFGIAP 202 (446)
Q Consensus 123 ~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~ 202 (446)
+..-.+.++.+.|+++||||+.=..+. .+....+.++.+.+=++.--.++-.+-..|---....+.+-.||..-.++
T Consensus 72 d~~G~~~a~~~~pl~SlHH~~~~~Pif---P~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 72 DPSGFLEAHPLAPLVSLHHWDSVDPIF---PNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred CcceeeecCCCCceeeeeehhhccccC---CCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 444445555789999999998633332 34445556666666444433333333223333444456677899887763
No 166
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=32.43 E-value=1.4e+02 Score=30.17 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=57.0
Q ss_pred hhchHHHHHHHHHcCCCEEEecccccccccCC----CC--CCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhh
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG----RG--PVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE 151 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~----~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 151 (446)
+-.=++=++-+.++|++-+-+|+ +.+-|.. .| .+| +++-.++.+.+.+.||.++++ |.|+-
T Consensus 200 ~~L~~~lv~eLeeAGLdRiNlSv--~aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~lP-- 266 (414)
T COG2100 200 VLLSKKLVDELEEAGLDRINLSV--DALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWLP-- 266 (414)
T ss_pred eeccHHHHHHHHHhCCceEEeec--ccCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeecC--
Confidence 33445567889999998666666 4454542 13 466 788889999999999999985 78884
Q ss_pred hCCCCChHhHHHHHHHHHHH
Q 013298 152 YGGWINRMIVKDFTAYADVC 171 (446)
Q Consensus 152 ~gg~~~~~~~~~f~~ya~~~ 171 (446)
| .|.+-...+..||+.+
T Consensus 267 --G-~ND~E~~~iIe~A~~i 283 (414)
T COG2100 267 --G-VNDDEMPKIIEWAREI 283 (414)
T ss_pred --C-cChHHHHHHHHHHHHh
Confidence 3 5666678888888876
No 167
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=31.98 E-value=58 Score=32.12 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=24.7
Q ss_pred CCEEEeeCCCCCCC-----------------------CCCCCchhHHHHHHHHHHHHH
Q 013298 341 PPIYVHENGLATPR-----------------------HSSLEDISRVKYLHAYIGSVL 375 (446)
Q Consensus 341 ppI~ITENG~~~~~-----------------------~~~~~D~~Ri~yl~~~l~~v~ 375 (446)
+||..||.|++..+ .+..+|--+..||+.++..-.
T Consensus 207 KpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~ 264 (299)
T PF13547_consen 207 KPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWD 264 (299)
T ss_pred cceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhc
Confidence 58999999998765 345677666667666665443
No 168
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=31.69 E-value=1.6e+02 Score=29.45 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCC-CCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHh
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMI 160 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~ 160 (446)
.+=++.|++.|+|+|=+.---.-..-.. ...+.++.++.++++++.++++||+-+++|+ |..... +. .
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~ais----Pg~~~~----~s---~ 86 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAIS----PGLDIC----YS---S 86 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEB----GTTT------TS---H
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEEC----cccccc----cC---c
Confidence 5557889999999998773111110000 1345677899999999999999999999996 433321 12 2
Q ss_pred HHHHHHHHHHHHHHhcCcceEEEec
Q 013298 161 VKDFTAYADVCFREFGDRVSYWTTV 185 (446)
Q Consensus 161 ~~~f~~ya~~~~~~~~~~v~~w~t~ 185 (446)
.+.+..-.+.+-+-+.-.|....++
T Consensus 87 ~~d~~~L~~K~~ql~~lGvr~Fail 111 (306)
T PF07555_consen 87 EEDFEALKAKFDQLYDLGVRSFAIL 111 (306)
T ss_dssp HHHHHHHHHHHHHHHCTT--EEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4455555555555555556655443
No 169
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.12 E-value=68 Score=28.88 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=42.1
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.....++-+++++.+|++.+++...+-...+... ..--....+.++++.+.+.+.|+++.+=-
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 4667888999999999999999976411111110 00112245677888888999999877643
No 170
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=30.77 E-value=1.8e+02 Score=30.62 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChH
Q 013298 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRM 159 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~ 159 (446)
++.+++|+++|++.+-+++ +-+ ++...-....+ .+.+.+.+..++++||.+.+++.- ++|. .+++
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~---~~~~~~~i~~~~~~Gi~v~~~~Ii-GlPg---------et~e 353 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT---VEIARRFTRDCHKLGIKVHGTFIL-GLPG---------ETRE 353 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCeEEEEEEE-eCCC---------CCHH
Confidence 5678999999999888887 332 22111111233 456778999999999998877642 3342 3444
Q ss_pred hHHHHHHHHHH
Q 013298 160 IVKDFTAYADV 170 (446)
Q Consensus 160 ~~~~f~~ya~~ 170 (446)
....-.+|+..
T Consensus 354 ~~~~ti~~~~~ 364 (472)
T TIGR03471 354 TIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHh
Confidence 45555555543
No 171
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=30.68 E-value=1.4e+02 Score=28.86 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=36.0
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 86 ~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
+++|++|++..=++-+=.|-.- +.= -+...+-+..++++||+|++++
T Consensus 78 ~mL~d~G~~~viiGHSERR~~f---~Et----~~~i~~Kv~~a~~~gl~pIvCi 124 (242)
T cd00311 78 EMLKDAGAKYVIIGHSERRQYF---GET----DEDVAKKVKAALEAGLTPILCV 124 (242)
T ss_pred HHHHHcCCCEEEeCcccccCcC---CCC----cHHHHHHHHHHHHCCCEEEEEe
Confidence 8999999999988876444321 111 2456688999999999999998
No 172
>PRK01060 endonuclease IV; Provisional
Probab=30.41 E-value=2.1e+02 Score=27.47 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=36.2
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEE
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 135 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p 135 (446)
+++-++.++++|++++=+.+.-++.... +.++.+. .+++-+.+.++||++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCC
Confidence 7888999999999999998765554322 2455444 345666788999984
No 173
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=29.96 E-value=1.9e+02 Score=31.76 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=57.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcH----hHHhh-----
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQ----ALEDE----- 151 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~----~l~~~----- 151 (446)
-++|+++.++.|++.+|+..+-+.+ +-....|+.++++|..+.++++.-..|. .+.+-
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4667889999999999998655443 2345677888888888877775433341 11110
Q ss_pred -----------hCCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 152 -----------YGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 152 -----------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
-.|-..| ....+.++.+.++++ ..-...+.|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTP---YAAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCH---HHHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 1344453 455566666666774 2334556666543
No 174
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=29.83 E-value=3.2e+02 Score=27.90 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=56.8
Q ss_pred hchHHHHHHHHHcCCCEEEecccc--cccccC----CCCCCChhhHHHHHHHHHHHHHCCCEE-EEEecCCCCcHhHHhh
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISW--SRLIPN----GRGPVNPKGLQYYNNLINELISYGIQP-HVTLHHLDLPQALEDE 151 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W--~ri~P~----~~g~~n~~~~~~y~~~i~~l~~~gi~p-~vtL~h~~~P~~l~~~ 151 (446)
..=+++++.++++|++.+.++++= ...++. +. .-+ ++.--+.|+.+++.||+. -..+. +++|.|..+
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~-~h~---~~~rl~~i~~a~~aG~~~v~~g~i-~Gl~e~~~d- 232 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGK-KKD---FRYRLNTPERAAKAGMRKIGIGAL-LGLDDWRTD- 232 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCC-CCC---HHHHHHHHHHHHHcCCCeeceeEE-EeCchhHHH-
Confidence 356888999999999988887732 223332 21 112 444556889999999983 33322 245554433
Q ss_pred hCCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCc
Q 013298 152 YGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (446)
Q Consensus 152 ~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 189 (446)
+-..+..++.+-.+|.+ ....+.+|+-.
T Consensus 233 ---------~~~~a~~l~~L~~~~~~-~~~sv~~~~l~ 260 (366)
T TIGR02351 233 ---------AFFTAYHLRYLQKKYWK-TEISISVPRLR 260 (366)
T ss_pred ---------HHHHHHHHHHHHHHcCC-CCccccccccc
Confidence 33455555666566653 33457788744
No 175
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.19 E-value=1.1e+02 Score=29.50 Aligned_cols=61 Identities=7% Similarity=0.053 Sum_probs=40.3
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.-.++++-+++++++|.+.++++-. +..+... ...-...++.++++++.+.+.||.+.+=.
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 4556788899999999999998521 1111110 00112245667788899999999887753
No 176
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.17 E-value=3.4e+02 Score=25.97 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=36.6
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEE
Q 013298 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 137 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 137 (446)
-+++-++.++++|++.+=+++.=....+.. ..++.+ ....+-+.+.++||++..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~~---~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLAR-LDWSKE---ERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCccccccc-ccCCHH---HHHHHHHHHHHcCCCceE
Confidence 358899999999999998875411111111 234433 355788899999999764
No 177
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=29.12 E-value=2e+02 Score=27.78 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=56.1
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccccCCCC--CCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCC
Q 013298 81 YKEDVKLMADTGLD--AYRFSISWSRLIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWI 156 (446)
Q Consensus 81 ~~~Di~l~~~lG~~--~~R~si~W~ri~P~~~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 156 (446)
..+-++.+++.|+. ++=+++.|..-. +.- .+|.+.+.-.+++|+.|+++|++.++.+.-+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~-------------- 89 (265)
T cd06589 26 VLEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPY-------------- 89 (265)
T ss_pred HHHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChh--------------
Confidence 35566677776554 666666665432 212 4566666667799999999999999876421
Q ss_pred ChHhHHHHHHHHHHHHHHhcCcceEEEecCCCcee
Q 013298 157 NRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (446)
Q Consensus 157 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 191 (446)
+++.|.+..+.+....| ---+|+=+|||...
T Consensus 90 ---v~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 120 (265)
T cd06589 90 ---IREWWAEVVKKLLVSLG-VDGFWTDMGEPSPG 120 (265)
T ss_pred ---HHHHHHHHHHHhhccCC-CCEEeccCCCCCcC
Confidence 14555555544332233 23347788999753
No 178
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=29.02 E-value=1.4e+02 Score=35.35 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=42.0
Q ss_pred hhhhchHHHHHHHHHcCCCEEEeccccc--cc-----------------------------ccCCCCCCCh----hhHHH
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWS--RL-----------------------------IPNGRGPVNP----KGLQY 120 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~--ri-----------------------------~P~~~g~~n~----~~~~~ 120 (446)
.-|.-..+.|+.||+||++++-+.--.+ .+ -|++...-|+ ..++=
T Consensus 477 Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 477 GTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAE 556 (1111)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHH
Confidence 3455566779999999999998665331 01 0111000111 12456
Q ss_pred HHHHHHHHHHCCCEEEEEe
Q 013298 121 YNNLINELISYGIQPHVTL 139 (446)
Q Consensus 121 y~~~i~~l~~~gi~p~vtL 139 (446)
+++||++|.++||++|+++
T Consensus 557 fK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHCCCEEEEec
Confidence 8899999999999999986
No 179
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.94 E-value=3.3e+02 Score=26.22 Aligned_cols=54 Identities=17% Similarity=0.157 Sum_probs=38.2
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEE
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 136 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 136 (446)
.-|++-+++++++|++.+=+++.-....|.. -.++. ....++-+.+.++||++.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~~~~~---~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR-LDWSR---EQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc-cCCCH---HHHHHHHHHHHHcCCCce
Confidence 4578999999999999999976543322222 12333 335578889999999875
No 180
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=28.82 E-value=1.7e+02 Score=29.83 Aligned_cols=84 Identities=13% Similarity=0.230 Sum_probs=54.5
Q ss_pred cchhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCC------Chhh-HHHHHHHHHHHHHCCCEEEEEecCCCCcH
Q 013298 74 ACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPV------NPKG-LQYYNNLINELISYGIQPHVTLHHLDLPQ 146 (446)
Q Consensus 74 a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~------n~~~-~~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 146 (446)
|.=|++ |+-=++-++. +..+|+. + |.+ .... -+....+++.++++|+-.=+...|-.++.
T Consensus 79 ADIHFd-~~lAl~a~~~--v~kiRIN---------P-GNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~ 145 (359)
T PF04551_consen 79 ADIHFD-YRLALEAIEA--VDKIRIN---------P-GNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEK 145 (359)
T ss_dssp EEESTT-CHHHHHHHHC---SEEEE----------T-TTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-H
T ss_pred eecCCC-HHHHHHHHHH--hCeEEEC---------C-CcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcH
Confidence 444555 3443444444 9999986 4 655 0011 34677999999999999999999999999
Q ss_pred hHHhhhCCCCChHhHHHHHHHHHHH
Q 013298 147 ALEDEYGGWINRMIVKDFTAYADVC 171 (446)
Q Consensus 147 ~l~~~~gg~~~~~~~~~f~~ya~~~ 171 (446)
-+..+| |-+....++.-.++++.+
T Consensus 146 ~~~~ky-~~t~~amvesA~~~~~~l 169 (359)
T PF04551_consen 146 DILEKY-GPTPEAMVESALEHVRIL 169 (359)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred HHHhhc-cchHHHHHHHHHHHHHHH
Confidence 998887 444455666666777654
No 181
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=28.69 E-value=94 Score=34.39 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCCh----H-hHHHHHHHHHHHHHHhcCcceEEEecCCC
Q 013298 123 NLINELISYGIQPHVTLHHLDLPQALEDEYGGWINR----M-IVKDFTAYADVCFREFGDRVSYWTTVNEP 188 (446)
Q Consensus 123 ~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~----~-~~~~f~~ya~~~~~~~~~~v~~w~t~NEp 188 (446)
.++.++|+++-..-+....|..|.|+. +||..+ + ++....++..-+.+.+|-.++|--++||=
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr 183 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNER 183 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhcc
Confidence 489999999999889999999999996 455432 2 33334555666678888788887789993
No 182
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=28.64 E-value=1.1e+02 Score=30.13 Aligned_cols=84 Identities=11% Similarity=0.113 Sum_probs=53.4
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCC----cHhHHhhhCCCCChHh
Q 013298 85 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL----PQALEDEYGGWINRMI 160 (446)
Q Consensus 85 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~----P~~l~~~~gg~~~~~~ 160 (446)
++.+++.+-.-=-++..|-.|.|++ .+... ...++++.++++|+++++++..++- +.-+. .-..+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~---~~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAH---AVLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH---HHhcCHHH
Confidence 5566665555556777888887765 33321 2358999999999999999976541 11111 11245666
Q ss_pred HHHHHHHHHHHHHHhc
Q 013298 161 VKDFTAYADVCFREFG 176 (446)
Q Consensus 161 ~~~f~~ya~~~~~~~~ 176 (446)
++.|++=+-.++++++
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7777666666666664
No 183
>PRK06256 biotin synthase; Validated
Probab=27.95 E-value=1e+02 Score=30.85 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcCCCEEEecc-cccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 80 KYKEDVKLMADTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si-~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.-++.++.||++|++.+-+++ +=.++.+.-....+ ++...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t---~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHT---YEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCC---HHHHHHHHHHHHHcCCeeccCe
Confidence 447889999999999998876 32223332211223 5667789999999999865543
No 184
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.80 E-value=2.1e+02 Score=27.29 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=39.5
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChh----hHHHHHHHHHHHHHCCCEEEEE-ecCCCCcH
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPK----GLQYYNNLINELISYGIQPHVT-LHHLDLPQ 146 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~----~~~~y~~~i~~l~~~gi~p~vt-L~h~~~P~ 146 (446)
...++=++++++||.+.+++...+ . |.+ .-.++ ..+..+++.+.+.+.||+..+= +.|++.|.
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~--~-~~~--~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~ 152 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK--T-PAG--FSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPG 152 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC--C-CCC--CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCC
Confidence 446777899999999998864322 2 221 11122 3455567777788999997764 34655543
No 185
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.31 E-value=1.8e+02 Score=27.98 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=38.8
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
..+++=++.+|++|++++=+| +|.-.++.+. ..++|+.++++|++++.-+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~---~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEIS--------DGSMEISLEE---RCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHH---HHHHHHHHHhCCCeEeccc
Confidence 567778899999999999998 3333455444 4589999999999998644
No 186
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=27.26 E-value=33 Score=26.48 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=16.1
Q ss_pred cchhhhchH--HHHHHHHHcCC
Q 013298 74 ACDEYHKYK--EDVKLMADTGL 93 (446)
Q Consensus 74 a~d~y~~~~--~Di~l~~~lG~ 93 (446)
=.|||..|+ +|++.|+++|+
T Consensus 45 YadFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 45 YADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHHccChHHHHHHHHHcCC
Confidence 357887764 78999999997
No 187
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=26.90 E-value=2.3e+02 Score=31.14 Aligned_cols=141 Identities=14% Similarity=0.178 Sum_probs=72.0
Q ss_pred CCCCCCCCeEeeeecchhccCCcCCCCCCCccchhhhcc-CCCCC-------CCcccchhhhchH-----HHHHHHHHcC
Q 013298 26 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVPG-------TGDVACDEYHKYK-----EDVKLMADTG 92 (446)
Q Consensus 26 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~-------~~~~a~d~y~~~~-----~Di~l~~~lG 92 (446)
+..|+.==.||.|| |++ +.. --..+-|+....- ..+++ .|. -.=-|..|. .+++++++.|
T Consensus 37 ~~g~~siE~~gGat--fd~--~~r--fl~edpwerl~~~r~~~pnt~lqmL~Rg~-N~vGy~~~~d~vv~~~v~~a~~~G 109 (596)
T PRK14042 37 DVGFWAMEVWGGAT--FDA--CLR--FLKEDPWSRLRQLRQALPNTQLSMLLRGQ-NLLGYRNYADDVVRAFVKLAVNNG 109 (596)
T ss_pred hcCCCEEEeeCCcc--cce--eec--ccCCCHHHHHHHHHHhCCCCceEEEeccc-cccccccCChHHHHHHHHHHHHcC
Confidence 34455444788887 433 211 1345678776543 22222 121 112344555 4689999999
Q ss_pred CCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCc----HhHHh----------------hh
Q 013298 93 LDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP----QALED----------------EY 152 (446)
Q Consensus 93 ~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P----~~l~~----------------~~ 152 (446)
++.+|+.-+ .|. ++-...-|+.+++.|.....+++--..| ..+.+ .-
T Consensus 110 idv~Rifd~-----------lnd--~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDt 176 (596)
T PRK14042 110 VDVFRVFDA-----------LND--ARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDM 176 (596)
T ss_pred CCEEEEccc-----------Ccc--hHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCc
Confidence 999998632 221 2334445666666666666554322222 11110 01
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 153 GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 153 gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
.|-.+| ....+.++.+-++++ ..-...+.|-..+
T Consensus 177 aG~l~P---~~v~~lv~alk~~~~-ipi~~H~Hnt~Gl 210 (596)
T PRK14042 177 AGLLTP---TVTVELYAGLKQATG-LPVHLHSHSTSGL 210 (596)
T ss_pred ccCCCH---HHHHHHHHHHHhhcC-CEEEEEeCCCCCc
Confidence 455564 445555666666664 3334556666543
No 188
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=26.68 E-value=2.8e+02 Score=28.08 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCC-CChhhHHHHHHHHHHHHHCCCEEE-EEecCCCCcHhHHhhhCCCCC
Q 013298 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWIN 157 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si-~W~-ri~P~~~g~-~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~ 157 (446)
++.++.|+++|+|.+.++| +-+ .+...- |+ .+ .+-..+.|+.+++.|+..+ ++|. +++|. .
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-gR~~~---~~~~~~ai~~lr~~g~~~v~iDli-~GlPg---------q- 162 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-GRIHS---QKQIIKAIENAKKAGFENISIDLI-YDTPL---------D- 162 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCEEEEEee-cCCCC---------C-
Confidence 6889999999999777776 343 232221 33 23 4557789999999999855 5553 35553 2
Q ss_pred hHhHHHHHHHHHHHHHHhcCcceEEEecCCCc
Q 013298 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (446)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 189 (446)
+.+.+.+-.+.+.+-=.++|..+...=||.
T Consensus 163 --t~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 163 --NKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 244555555555443234555444434444
No 189
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=26.48 E-value=3.2e+02 Score=27.03 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCEEE-eccc-c-----cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 81 YKEDVKLMADTGLDAYR-FSIS-W-----SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R-~si~-W-----~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.++.++.||++|++++- .+.+ - .++.|.. .+ .+.+.+.+..+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~---~t---~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK---LS---SDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC---CC---HHHHHHHHHHHHHcCCCceeeE
Confidence 47889999999999884 2321 1 1222332 23 4556799999999999998775
No 190
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=26.30 E-value=1e+02 Score=34.38 Aligned_cols=64 Identities=20% Similarity=0.430 Sum_probs=42.3
Q ss_pred hhchHHH-HHHHHHcCCCEEEecc--cc-ccc-----------ccCCC-CCCC-hhhHHHHHHHHHHHHHCCCEEEEEec
Q 013298 78 YHKYKED-VKLMADTGLDAYRFSI--SW-SRL-----------IPNGR-GPVN-PKGLQYYNNLINELISYGIQPHVTLH 140 (446)
Q Consensus 78 y~~~~~D-i~l~~~lG~~~~R~si--~W-~ri-----------~P~~~-g~~n-~~~~~~y~~~i~~l~~~gi~p~vtL~ 140 (446)
|.-+.|+ +..+|+||.|++.+=- +- +.. -|... |..+ +..+.=++.||++|.+.||++++++-
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 7666666 9999999999987321 12 111 12211 2222 22255688999999999999999875
Q ss_pred C
Q 013298 141 H 141 (446)
Q Consensus 141 h 141 (446)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 5
No 191
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=26.09 E-value=3.3e+02 Score=28.15 Aligned_cols=89 Identities=17% Similarity=0.301 Sum_probs=58.1
Q ss_pred CcccchhhhchHHHHHHHHHc-CCCEEEecc--cccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEE-EEecCCCCcH
Q 013298 71 GDVACDEYHKYKEDVKLMADT-GLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQ 146 (446)
Q Consensus 71 ~~~a~d~y~~~~~Di~l~~~l-G~~~~R~si--~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~ 146 (446)
++.+.+-.++ .+|++.+.++ ++. .++++ .|+.+ ..+.++.+.++++||++. ++...|..|.
T Consensus 33 ~g~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~d~~-------------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~ 97 (378)
T TIGR02635 33 EGAARNVFEK-IEDAALVHRLTGIC-PTVALHIPWDRV-------------EDYEELARYAEELGLKIGAINPNLFQDDD 97 (378)
T ss_pred CCCCCCHHHH-HHHHHHHHhhcCCC-CceeeccCCccc-------------cCHHHHHHHHHHcCCceeeeeCCccCCcc
Confidence 3445544444 7788888888 555 56555 44211 236678888999999998 7776665565
Q ss_pred hHHhhhCCCCCh--HhHHHHHHHHHHHH---HHhcC
Q 013298 147 ALEDEYGGWINR--MIVKDFTAYADVCF---REFGD 177 (446)
Q Consensus 147 ~l~~~~gg~~~~--~~~~~f~~ya~~~~---~~~~~ 177 (446)
+ +.|.++|+ ++.+.-.++.+.|. +.+|.
T Consensus 98 ~---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 98 Y---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred c---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 24677765 56677777777664 66665
No 192
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=25.62 E-value=2.5e+02 Score=21.76 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=31.6
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 86 ~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
..++.+|+.++|=| ... | +.+-+.+++..|+ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s~r-g-----g~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SSR-G-----GARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------CCC-c-----HHHHHHHHHHHHH-CCCeEEEeC
Confidence 67889999999999 221 2 4677889999998 888887776
No 193
>PRK09389 (R)-citramalate synthase; Provisional
Probab=25.39 E-value=1.2e+02 Score=32.52 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=48.5
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCChhhHHHHHHHHHHHHHCCCEEEEEecC
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHH 141 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h 141 (446)
-++|++.+.+.|++.+++.++-|.+.-+.. +.--++.++...+.+..+++.|+++.+++-.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 389999999999999999997766643221 3334567888999999999999999998864
No 194
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=25.33 E-value=2.4e+02 Score=29.43 Aligned_cols=82 Identities=13% Similarity=0.243 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCCEEEecc--cccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEE-EEecCCCCcHh--HHhhhCCCC
Q 013298 82 KEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQA--LEDEYGGWI 156 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si--~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~--l~~~~gg~~ 156 (446)
.+|+..+.++.--..|+++ .|.. +|.+.++ +.++++||+.- +...-|..|+. -.-+.|...
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 6788888888766666665 6722 3544444 89999999988 76666766732 111346677
Q ss_pred Ch--HhHHHHHHHHHHH---HHHhcC
Q 013298 157 NR--MIVKDFTAYADVC---FREFGD 177 (446)
Q Consensus 157 ~~--~~~~~f~~ya~~~---~~~~~~ 177 (446)
|| .+.+...+....| .+.+|.
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs 164 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGS 164 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 65 4666666766665 455654
No 195
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=25.31 E-value=6.4e+02 Score=24.55 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=56.2
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCCh
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINR 158 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~ 158 (446)
.+.++-++.+|+.|+. ++.+++.+--.|.. +..+ .+++.++++.+.+.|..-+ .|. +. .|...
T Consensus 114 ~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~-~~~~---~~~~~~~~~~~~~~Ga~~i-~l~---------DT-~G~~~- 176 (274)
T cd07938 114 ERFEPVAELAKAAGLR-VRGYVSTAFGCPYE-GEVP---PERVAEVAERLLDLGCDEI-SLG---------DT-IGVAT- 176 (274)
T ss_pred HHHHHHHHHHHHCCCe-EEEEEEeEecCCCC-CCCC---HHHHHHHHHHHHHcCCCEE-EEC---------CC-CCccC-
Confidence 4556668999999985 77777666545665 6676 6788899999999998753 443 22 56566
Q ss_pred HhHHHHHHHHHHHHHHhcC
Q 013298 159 MIVKDFTAYADVCFREFGD 177 (446)
Q Consensus 159 ~~~~~f~~ya~~~~~~~~~ 177 (446)
+..+.+..+.+.+++++
T Consensus 177 --P~~v~~lv~~l~~~~~~ 193 (274)
T cd07938 177 --PAQVRRLLEAVLERFPD 193 (274)
T ss_pred --HHHHHHHHHHHHHHCCC
Confidence 45666677777777754
No 196
>PRK05660 HemN family oxidoreductase; Provisional
Probab=25.28 E-value=3.2e+02 Score=27.99 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhhHHHHHHHHHHHHHCCCEEE-EEecCCCCcHhHHhhhCCCCCh
Q 013298 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWINR 158 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~~ 158 (446)
++.++.|+++|++.+-++| +-+ .+...-....+ .+-..+.|+.+++.|++++ ++|. +++|. .
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~---~~~~~~ai~~~~~~G~~~v~~dli-~Glpg---------q-- 171 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHG---PDEAKRAAKLAQGLGLRSFNLDLM-HGLPD---------Q-- 171 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C--
Confidence 5899999999999777776 222 22211111223 4456678999999999875 5553 35553 2
Q ss_pred HhHHHHHHHHHHHHHHhcCcceEEEecCCCce
Q 013298 159 MIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (446)
Q Consensus 159 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 190 (446)
+.+.+.+-.+.+.+.=-+++..+...=||..
T Consensus 172 -t~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 172 -SLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred -CHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 2455666566655544567777766666653
No 197
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=25.02 E-value=2.1e+02 Score=28.47 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhc
Q 013298 120 YYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFG 176 (446)
Q Consensus 120 ~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 176 (446)
...+.|..|+++|+++++++--++.. ....++..++.|++....+++.++
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~-------~~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGH-------VDLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCc-------cccCCHHHHHHHHHHHHHHHHHhC
Confidence 35678899999999999998543211 112355667777777777777775
No 198
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.02 E-value=3.9e+02 Score=25.65 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=38.1
Q ss_pred hchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHC-CCEEEEE
Q 013298 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHVT 138 (446)
Q Consensus 79 ~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~-gi~p~vt 138 (446)
..+++-+++++++|++.+=+.+......+.. ..+.+ ..+++.+.+.++ |+...+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~--~~~~~---~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR--PLKKE---RAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC--CCCHH---HHHHHHHHHHHcCCCcEEEE
Confidence 6679999999999999998888665444332 22433 355677777777 6665543
No 199
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=24.83 E-value=1.9e+02 Score=27.15 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=34.9
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 86 ~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
+++|++|++..=++-+=.| +.+. . ..+-+..++++||+|+++.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~Et-------d---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKLA-------D---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCcc-------H---HHHHHHHHHHCCCEEEEEE
Confidence 8999999999988887666 3222 1 3578899999999999999
No 200
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=24.66 E-value=2.2e+02 Score=30.02 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhhHHHHHHHHHHHHHCC-CEEEEEecCCCCcHhHHhhhCCCCCh
Q 013298 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTLHHLDLPQALEDEYGGWINR 158 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL~h~~~P~~l~~~~gg~~~~ 158 (446)
++.++.|+++|+|.+.+++ +-+ .+...- |+.. ..+-..+.|+.+++.| +.+.++|. +++|. .+
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-gR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------qT- 228 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA-GRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG---------QT- 228 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh-CCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------CC-
Confidence 6789999999999888887 332 222111 2221 1344667899999999 66666664 35553 22
Q ss_pred HhHHHHHHHHHHHHHHhcCcceEEEecCCCcee
Q 013298 159 MIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (446)
Q Consensus 159 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 191 (446)
.+.+.+=.+.+.+.=.++|..+...-+|...
T Consensus 229 --~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~ 259 (449)
T PRK09058 229 --PEIWQQDLAIVRDLGLDGVDLYALNLLPGTP 259 (449)
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeccccCCCCH
Confidence 3344444455444334678888877788753
No 201
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=24.60 E-value=61 Score=34.66 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=36.5
Q ss_pred CccceEEEcCCCCCCccccchhHHHHHHHHhcCCCCCCCcccC
Q 013298 404 SSYGLYYVDRDDPDLKRYPKLSALWYSQFLKGRSVRSDEVFTL 446 (446)
Q Consensus 404 ~rfGL~~VD~~~~~~~R~pK~S~~~y~~ii~~~~~~~~~~~~~ 446 (446)
...||+|||++.++.+--|-.+++--|+..+.-+.+.+|+..|
T Consensus 220 vqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVAL 262 (730)
T COG0376 220 VQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVAL 262 (730)
T ss_pred heeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhh
Confidence 4579999999987777778899999999999988888887543
No 202
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.56 E-value=2.9e+02 Score=26.97 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=50.5
Q ss_pred cchhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhH
Q 013298 74 ACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQAL 148 (446)
Q Consensus 74 a~d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l 148 (446)
+.+..+...+=.+.+|++|+..+|-+..=+|--|...-.+.+++ +..+-+.+++.||..+.+.++-..+..+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~g---l~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEG---LKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHH---HHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 34566777788899999999999999755776665421123444 5567777899999999988764444333
No 203
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.49 E-value=4.9e+02 Score=24.79 Aligned_cols=52 Identities=6% Similarity=-0.003 Sum_probs=34.4
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEE
Q 013298 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 137 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 137 (446)
-+++.+++++++|++.+=+........+. ..... .-+++-+.+.++||++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~---~~~~~---~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAP---DLKAG---GIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcccccc---ccCch---HHHHHHHHHHHcCCeEEE
Confidence 47999999999999998874322221111 12222 245677788899998753
No 204
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=24.27 E-value=6.9e+02 Score=24.55 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=57.3
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCC
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWI 156 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 156 (446)
...+.++=++.+++.|+. ++.+|+-+---|.. |..+ .+++.++++.+.+.|+.- +.|. +. .|..
T Consensus 118 ~l~~~~~~v~~ak~~g~~-v~~~i~~~~~~~~~-~~~~---~~~~~~~~~~~~~~G~d~-i~l~---------DT-~G~~ 181 (287)
T PRK05692 118 SLERFEPVAEAAKQAGVR-VRGYVSCVLGCPYE-GEVP---PEAVADVAERLFALGCYE-ISLG---------DT-IGVG 181 (287)
T ss_pred HHHHHHHHHHHHHHcCCE-EEEEEEEEecCCCC-CCCC---HHHHHHHHHHHHHcCCcE-EEec---------cc-cCcc
Confidence 445677788999999974 67666554444555 6666 678999999999999974 4443 22 5666
Q ss_pred ChHhHHHHHHHHHHHHHHhcC
Q 013298 157 NRMIVKDFTAYADVCFREFGD 177 (446)
Q Consensus 157 ~~~~~~~f~~ya~~~~~~~~~ 177 (446)
+| ....+.++.+.+++++
T Consensus 182 ~P---~~v~~lv~~l~~~~~~ 199 (287)
T PRK05692 182 TP---GQVRAVLEAVLAEFPA 199 (287)
T ss_pred CH---HHHHHHHHHHHHhCCC
Confidence 64 5566677777777764
No 205
>PLN02808 alpha-galactosidase
Probab=24.10 E-value=2.5e+02 Score=29.16 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=46.2
Q ss_pred hhhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCC
Q 013298 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL 144 (446)
Q Consensus 76 d~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~ 144 (446)
..|.+++.|.+..++-||+.+.+.---. . +. + .-..|..+-++|.+-|-..+..|+.|..
T Consensus 130 Gs~~~e~~DA~~fA~WGvDylK~D~C~~----~--~~-~--~~~~y~~m~~AL~~tGRpi~~slc~wg~ 189 (386)
T PLN02808 130 GSLGHEEQDAKTFASWGIDYLKYDNCEN----T--GT-S--PQERYPKMSKALLNSGRPIFFSLCEWGQ 189 (386)
T ss_pred cchHHHHHHHHHHHHhCCCEEeecCcCC----C--Cc-c--HHHHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 4578999999999999999999875321 1 11 1 2356899999999999877778998864
No 206
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.74 E-value=3.7e+02 Score=27.79 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCChhhHHHHHHHHHHHHHCCCE-EEEEecCCCCcHhHHhhhCCCCCh
Q 013298 82 KEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLPQALEDEYGGWINR 158 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si-~W-~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~~~~ 158 (446)
++.++.|+++|+|.+-+++ +- .++...-.-..+ .+-..+.++.+++.|++ +.++|. +++|. .+
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------qt- 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------QT- 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------CC-
Confidence 6889999999999776665 22 122211101223 33456789999999998 556663 35553 22
Q ss_pred HhHHHHHHHHHHHHHHhcCcceEEEecCCCceeeecccccc
Q 013298 159 MIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAMVGYDFG 199 (446)
Q Consensus 159 ~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g 199 (446)
.+.+.+=++.+.+-=.++|..+...-||.......+..|
T Consensus 181 --~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g 219 (400)
T PRK07379 181 --LEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPG 219 (400)
T ss_pred --HHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcC
Confidence 334444444444333467777766677775433333334
No 207
>PRK10426 alpha-glucosidase; Provisional
Probab=23.59 E-value=7e+02 Score=27.66 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=66.1
Q ss_pred hHHHHHHHHHcCCCEEEecc-cccccccCCCC-------CCChhhHHHHHHHHHHHHHCCCEEEEEecCC---CCcHhHH
Q 013298 81 YKEDVKLMADTGLDAYRFSI-SWSRLIPNGRG-------PVNPKGLQYYNNLINELISYGIQPHVTLHHL---DLPQALE 149 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si-~W~ri~P~~~g-------~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~ 149 (446)
..+-++.+++.|+..==+-+ .|.-......| .+|.+.+.-.+++|+.|++.|++.++.+.-+ +.|..-+
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e 302 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEE 302 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHH
Confidence 45557888888876544433 67654322111 3465555556799999999999999887544 3333322
Q ss_pred hhh---------C---------------CCCChHhHHHHHHHHHHHHHHhcCcceE-EEecCCC
Q 013298 150 DEY---------G---------------GWINRMIVKDFTAYADVCFREFGDRVSY-WTTVNEP 188 (446)
Q Consensus 150 ~~~---------g---------------g~~~~~~~~~f~~ya~~~~~~~~~~v~~-w~t~NEp 188 (446)
... | .++||+.++.|.+..+.-....| |+. |.=+||+
T Consensus 303 ~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 303 AAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 110 1 15789999998877665444454 555 4778994
No 208
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.37 E-value=5.2e+02 Score=24.76 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=35.7
Q ss_pred chHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEE
Q 013298 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 137 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 137 (446)
-+++-++.++++|++.+=+++.=....+.. ..++.+ ..+.+-+.+.++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~~---~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR-LDWSRE---QRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc-cCCCHH---HHHHHHHHHHHcCCceeE
Confidence 468899999999999998864211111111 123333 356788889999999753
No 209
>PRK10658 putative alpha-glucosidase; Provisional
Probab=23.12 E-value=5.7e+02 Score=28.55 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=61.8
Q ss_pred HHHHHHcCCC--EEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCC---cHhHHhh--------
Q 013298 85 VKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL---PQALEDE-------- 151 (446)
Q Consensus 85 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~l~~~-------- 151 (446)
++.+++.|+. ++=+++.|..-.--..-.+|++.+.--+++|+.|+++|+++++.+.-+-. |..-...
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~ 368 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKR 368 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEEC
Confidence 4667777765 66677777543211112344444434568999999999999987754422 2221110
Q ss_pred ----------------hCCCCChHhHHHHHHHHHHHHHHhcCcce-EEEecCCCc
Q 013298 152 ----------------YGGWINRMIVKDFTAYADVCFREFGDRVS-YWTTVNEPN 189 (446)
Q Consensus 152 ----------------~gg~~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~ 189 (446)
.-.++||+.++.|.+..+.+.+ .| |+ +|.=+||+.
T Consensus 369 ~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G--vdgfw~D~gE~~ 420 (665)
T PRK10658 369 PDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG--VDCFKTDFGERI 420 (665)
T ss_pred CCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC--CcEEEecCCcee
Confidence 0125689999999888877554 33 44 466678863
No 210
>PRK08508 biotin synthase; Provisional
Probab=23.01 E-value=1.8e+02 Score=28.42 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=39.7
Q ss_pred hHHHHHHHHHcCCCEEEecccc-cccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 81 YKEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W-~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.+|.++.||+.|++++-.+++= +++.|.-...-+ ++..-+.+..+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~---~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHT---WEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCC---HHHHHHHHHHHHHcCCeeccee
Confidence 4899999999999999987732 345665422223 4555568888999999775544
No 211
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=22.79 E-value=2.3e+02 Score=26.63 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=31.4
Q ss_pred hhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEE
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 135 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p 135 (446)
.-.-+.=+++|++||.+++.|- |.+ |.-- ++-|..+-.+|.++|+..
T Consensus 134 ~V~vetAiaml~dmG~~SiKff-------Pm~-Gl~~---leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 134 IVPVETAIAMLKDMGGSSIKFF-------PMG-GLKH---LEELKAVAKACARNGFTL 180 (218)
T ss_dssp EEEHHHHHHHHHHTT--EEEE----------T-TTTT---HHHHHHHHHHHHHCT-EE
T ss_pred cccHHHHHHHHHHcCCCeeeEe-------ecC-Cccc---HHHHHHHHHHHHHcCcee
Confidence 3456778999999999999874 776 5333 555778888899999754
No 212
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=22.21 E-value=3.5e+02 Score=29.26 Aligned_cols=107 Identities=12% Similarity=0.128 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCEEEeccc--ccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChH
Q 013298 82 KEDVKLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRM 159 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~--W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~ 159 (446)
++.+++|+++|++.+-+++. -.++.-.-.-..+ .+-..+.++.+++.|+++.+.|. +++|. .
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------q--- 269 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRGHT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG---------S--- 269 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC---------C---
Confidence 68899999999998877762 3333322111123 44566788999999998766653 35553 1
Q ss_pred hHHHHHHHHHHHHH--Hhc-CcceEEEecCCCceeeeccccccCCCCC
Q 013298 160 IVKDFTAYADVCFR--EFG-DRVSYWTTVNEPNGFAMVGYDFGIAPPK 204 (446)
Q Consensus 160 ~~~~f~~ya~~~~~--~~~-~~v~~w~t~NEp~~~~~~gy~~g~~~Pg 204 (446)
+.+.+.+=++.+++ .++ |.|+.+.+.=.|......-|..|.|.|-
T Consensus 270 t~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 270 SFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 23455555555554 243 5677766555555433334566666653
No 213
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.15 E-value=2.5e+02 Score=28.04 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=42.3
Q ss_pred chHHHHHHHHHcCCCEEEecc--cccc---cccC-----------------------CCCCCChhhHHHHHHHHHHHHHC
Q 013298 80 KYKEDVKLMADTGLDAYRFSI--SWSR---LIPN-----------------------GRGPVNPKGLQYYNNLINELISY 131 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si--~W~r---i~P~-----------------------~~g~~n~~~~~~y~~~i~~l~~~ 131 (446)
-.++=|+.|+..++|.+-+=+ .|.- ..|. ..|.+.++. ++++++.++++
T Consensus 18 ~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~d---i~eiv~yA~~r 94 (326)
T cd06564 18 FLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEE---FKELIAYAKDR 94 (326)
T ss_pred HHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHH---HHHHHHHHHHc
Confidence 356678999999999776533 2211 1111 115667655 55999999999
Q ss_pred CCEEEEEecCCCCcHhH
Q 013298 132 GIQPHVTLHHLDLPQAL 148 (446)
Q Consensus 132 gi~p~vtL~h~~~P~~l 148 (446)
||++|--+ |+|.-.
T Consensus 95 gI~vIPEI---D~PGH~ 108 (326)
T cd06564 95 GVNIIPEI---DSPGHS 108 (326)
T ss_pred CCeEeccC---CCcHHH
Confidence 99998766 677654
No 214
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.93 E-value=82 Score=28.57 Aligned_cols=67 Identities=18% Similarity=0.385 Sum_probs=41.6
Q ss_pred EEecccccccccCCC-CC-----CChhhHHHHHHHHHHHHH-CCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHH
Q 013298 96 YRFSISWSRLIPNGR-GP-----VNPKGLQYYNNLINELIS-YGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTA 166 (446)
Q Consensus 96 ~R~si~W~ri~P~~~-g~-----~n~~~~~~y~~~i~~l~~-~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ 166 (446)
-|+.++|..=..+.. |. +|++|.+-|++....=.+ ..++|+.|+.. ++|... .|-|.+.+++..+..
T Consensus 78 nkYQVSW~~e~k~a~sG~y~V~~fDEegyaalrKA~R~ged~~~vkplftV~v-~h~Ga~---~gpwV~sE~lA~~~~ 151 (167)
T PF05404_consen 78 NKYQVSWTEEHKKASSGTYEVKFFDEEGYAALRKAQRNGEDVSSVKPLFTVTV-NHPGAY---KGPWVNSEFLAALLA 151 (167)
T ss_pred CceEEEEEechhhccCCceEEEEeChHHHHHHHHHhhcCCCcccCCccEEEEE-ecCccc---cCCCchHHHHHHHHH
Confidence 356677765444332 44 688898777765544333 67999988643 334432 288999887766544
No 215
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.92 E-value=5.9e+02 Score=22.90 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=43.4
Q ss_pred hhchHHHHHHHHHcCCCE--EEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCE--EEEEecCCCCcHhHHhhhC
Q 013298 78 YHKYKEDVKLMADTGLDA--YRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQ--PHVTLHHLDLPQALEDEYG 153 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~--~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~--p~vtL~h~~~P~~l~~~~g 153 (446)
-.+|..-++.+++.|+.. |-|. + +.. ++.+-.+.+++.++..+.. |++++- ..+
T Consensus 37 D~~~~~~~~~a~~aGl~~G~Yhy~----~--~~~------~a~~qA~~f~~~~~~~~~~~~~~lD~E----------~~~ 94 (184)
T cd06525 37 DSYFNENYNGAKAAGLKVGFYHFL----V--GTS------NPEEQAENFYNTIKGKKMDLKPALDVE----------VNF 94 (184)
T ss_pred CHhHHHHHHHHHHCCCceEEEEEe----e--CCC------CHHHHHHHHHHhccccCCCCCeEEEEe----------cCC
Confidence 466888888888888752 2332 2 111 1233445566666655432 232221 113
Q ss_pred CCCChHhHHHHHHHHHHHHHHhcCcceEE
Q 013298 154 GWINRMIVKDFTAYADVCFREFGDRVSYW 182 (446)
Q Consensus 154 g~~~~~~~~~f~~ya~~~~~~~~~~v~~w 182 (446)
+.......+....|++.|-++.|-++-.+
T Consensus 95 ~~~~~~~~~~~~~f~~~v~~~~G~~~~iY 123 (184)
T cd06525 95 GLSKDELNDYVLRFIEEFEKLSGLKVGIY 123 (184)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 33333445667777777777766554433
No 216
>PHA02152 hypothetical protein
Probab=21.79 E-value=63 Score=25.49 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=22.9
Q ss_pred ccCC-cCCCCCCCccchhhhccCCCCCCCcccchhhhchHHHHHHHHHc
Q 013298 44 VEGA-ANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADT 91 (446)
Q Consensus 44 ~EG~-~~~~g~~~s~wd~~~~~~~~~~~~~~a~d~y~~~~~Di~l~~~l 91 (446)
|||+ |.+.|+...-|-.|...|++ .|++|.+.||.+
T Consensus 42 v~g~~~g~~~~~~~ew~~fissgr~------------~~~~dy~km~~i 78 (96)
T PHA02152 42 VNGARFGEENKPVAEWFYFISSGRV------------YFKEDYDKMATI 78 (96)
T ss_pred hcccchhhcCCchhhhhhhhhcchh------------hHHhhHHHHHHH
Confidence 4565 33566777777777766553 367777777653
No 217
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=21.75 E-value=1.5e+02 Score=31.14 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCChhhHHHHHHHHHHHHHCCCE-EEEEecCCCCc
Q 013298 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLP 145 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~h~~~P 145 (446)
++.+++|+++|++.+-+++ +-+ .+...-....+ .+.+.+.++.+++.|++ +-++| -+++|
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dl-i~GlP 213 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDL-IYGLP 213 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeE-EeeCC
Confidence 7889999999999666665 222 12211112233 45677899999999996 33444 23444
No 218
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.63 E-value=6.6e+02 Score=25.62 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=57.7
Q ss_pred chHHHHHHHHHcCCCEEEecccc-c-----ccccCCCCCCChhhHHHHHHHHHHHHHCCCE-EEEEecCCCCcHhHHhhh
Q 013298 80 KYKEDVKLMADTGLDAYRFSISW-S-----RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLPQALEDEY 152 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si~W-~-----ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~ 152 (446)
.=+++++.||++|++.+-++++= + .|-|.+. .-+ ++.--+.|+.+++.||+ +-..+. ++++.|..+
T Consensus 161 lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~-~h~---~~~rl~~i~~a~~aG~~~v~~g~i-~Glge~~~d-- 233 (371)
T PRK09240 161 LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGP-KRD---FEYRLETPERAGRAGIRKIGLGAL-LGLSDWRTD-- 233 (371)
T ss_pred CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCC-CCC---HHHHHHHHHHHHHcCCCeeceEEE-ecCCccHHH--
Confidence 34788899999999988888843 2 3433321 223 44455688899999996 533332 244444332
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCc
Q 013298 153 GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (446)
Q Consensus 153 gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 189 (446)
+-.++.-++.+-..|+. +..=+.+|+-.
T Consensus 234 --------~~~~a~~l~~L~~~~~~-~~~sv~~~~l~ 261 (371)
T PRK09240 234 --------ALMTALHLRYLQRKYWQ-AEYSISFPRLR 261 (371)
T ss_pred --------HHHHHHHHHHHHHhCCC-CceeeecCccc
Confidence 45666667777667764 33335677754
No 219
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.41 E-value=4.5e+02 Score=25.38 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCC
Q 013298 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL 142 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~ 142 (446)
.+=++.++++|.+++-+-+..+|....+ .++...++ .+-..+.++++.......|-
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~--~~~~~~~~---~~~~~~~~~~~~~~~i~~Ha 69 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRP--MLEEEVID---WFKAALETNKNLSQIVLVHA 69 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCC--CCCHHHHH---HHHHHHHHcCCCCcceeccC
Confidence 5568999999999999999888876554 34544444 44455888888744344553
No 220
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.22 E-value=2.8e+02 Score=27.94 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=52.4
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccC-----CCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCC
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPN-----GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGW 155 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~-----~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~ 155 (446)
-+|.++.||++|++++= +....-.-|+ ..+... .+-..+.|+.+++.||++..++. +++|
T Consensus 140 ~~e~l~~LkeAGl~~i~-~~~~E~~~~~v~~~i~~~~~~---~~~~~~~i~~a~~~Gi~v~s~~i-~G~~---------- 204 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMP-GTAAEILDDEVRKVICPDKLS---TAEWIEIIKTAHKLGIPTTATIM-YGHV---------- 204 (343)
T ss_pred HHHHHHHHHHhCccccc-CcchhhcCHHHHHhcCCCCCC---HHHHHHHHHHHHHcCCcccceEE-EecC----------
Confidence 47789999999999874 2122211110 002223 33456899999999998866642 1222
Q ss_pred CChHhHHHHHHHHHHHHHHhcCcceEEEecC
Q 013298 156 INRMIVKDFTAYADVCFREFGDRVSYWTTVN 186 (446)
Q Consensus 156 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~N 186 (446)
.+.+.+.....+.+.+-..++ .+.-.+++|
T Consensus 205 Et~ed~~~~l~~lr~l~~~~~-~~~~~iP~~ 234 (343)
T TIGR03551 205 ETPEHWVDHLLILREIQEETG-GFTEFVPLP 234 (343)
T ss_pred CCHHHHHHHHHHHHHhhHHhC-CeeEEEecc
Confidence 333445666666666665554 344456655
No 221
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=21.12 E-value=1.7e+02 Score=28.34 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=46.9
Q ss_pred hhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCC
Q 013298 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWIN 157 (446)
Q Consensus 78 y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~ 157 (446)
=.++++=++.++++|++++=+| + |.++-. -+--.++|..++++|++|+--+-- --| +-..
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiS--------d--Gti~l~-~~~r~~~I~~~~~~Gf~v~~EvG~-K~~--------~~~~ 142 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEIS--------D--GTIDLP-EEERLRLIRKAKEEGFKVLSEVGK-KDP--------ESDF 142 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE------------SSS----HHHHHHHHHHHCCTTSEEEEEES--SSH--------HHHT
T ss_pred cChHHHHHHHHHHcCCCEEEec--------C--CceeCC-HHHHHHHHHHHHHCCCEEeecccC-CCc--------hhcc
Confidence 3567888999999999999998 2 444321 233558899999999999865530 000 0011
Q ss_pred hHhHHHHHHHHHHHHHHhcC
Q 013298 158 RMIVKDFTAYADVCFREFGD 177 (446)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~~~ 177 (446)
..+++...+.++...+.=.+
T Consensus 143 ~~~~~~~i~~~~~dLeAGA~ 162 (244)
T PF02679_consen 143 SLDPEELIEQAKRDLEAGAD 162 (244)
T ss_dssp T--CCHHHHHHHHHHHHTEC
T ss_pred cCCHHHHHHHHHHHHHCCCC
Confidence 12245667777777666433
No 222
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.97 E-value=3.6e+02 Score=28.11 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEecc-cc-cccccCCCCC-CChhhHHHHHHHHHHHHHCCCEEE-EEecCCCCcH
Q 013298 82 KEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGP-VNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQ 146 (446)
Q Consensus 82 ~~Di~l~~~lG~~~~R~si-~W-~ri~P~~~g~-~n~~~~~~y~~~i~~l~~~gi~p~-vtL~h~~~P~ 146 (446)
++.+++|+++|++.+.+++ +- .++...- |+ .+ .+-..+.|+.|++.|+..+ ++|. +++|.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~ 204 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHAL-HRPQK---RADVHQALEWIRAAGFPILNIDLI-YGIPG 204 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC
Confidence 6889999999999777776 33 1222221 22 23 4557789999999999864 4542 35553
No 223
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.90 E-value=8.1e+02 Score=25.22 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=52.8
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEE-EecCCCCcHhHHhhhCCC
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV-TLHHLDLPQALEDEYGGW 155 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-tL~h~~~P~~l~~~~gg~ 155 (446)
..-...+-++.++++|++.+=+ ....+.|-+ -...+.. ...+++-+.|.++||++.. +..-+..|.+. .|++
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~---~g~l 102 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTF--HDDDLIPFG-APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVFK---DGGF 102 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEe--cccccCCCC-CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcccc---CCCC
Confidence 3345688899999999998854 333445543 1111111 2366788889999999664 33223233332 3677
Q ss_pred CCh--HhHHHHHHHHHH---HHHHhcC
Q 013298 156 INR--MIVKDFTAYADV---CFREFGD 177 (446)
Q Consensus 156 ~~~--~~~~~f~~ya~~---~~~~~~~ 177 (446)
.++ +..+.-.++.+. ++..+|-
T Consensus 103 as~d~~vR~~ai~~~kraId~A~eLGa 129 (382)
T TIGR02631 103 TSNDRSVRRYALRKVLRNMDLGAELGA 129 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 765 333333333332 2556654
No 224
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=20.84 E-value=74 Score=23.25 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=24.1
Q ss_pred HHHHHHHH-HCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHH
Q 013298 122 NNLINELI-SYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYA 168 (446)
Q Consensus 122 ~~~i~~l~-~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya 168 (446)
+++++.|. ..||+|.+|.. .|-. +-+++++.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~------Le~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQK------LEKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHH------HHHHCHHHHHHhh
Confidence 46788884 66999999874 4433 2345577777763
No 225
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=20.79 E-value=3.1e+02 Score=30.69 Aligned_cols=51 Identities=22% Similarity=0.409 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHH
Q 013298 121 YNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCF 172 (446)
Q Consensus 121 y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~ 172 (446)
+..+++.|+++|+..=+...|-.++.-+..+||. +-...++.-.+|++.|-
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e 262 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICR 262 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999988875 44456777777777663
No 226
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=20.71 E-value=1.1e+02 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=24.1
Q ss_pred HHHHHHHHH-CCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHH
Q 013298 122 NNLINELIS-YGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYA 168 (446)
Q Consensus 122 ~~~i~~l~~-~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya 168 (446)
++.++.|.+ +||+|.+|.. .|-. +-+++++.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~~-----VW~~------LekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTRF-----VWYL------LEKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHHH-----HHHH------HHHHHHHHHHHHh
Confidence 467766654 9999998863 4543 2356677887773
No 227
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=20.65 E-value=4e+02 Score=26.33 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCCCChHhHHHHHHHHHHHHHHhcCcceEEEecCCCceeeecccc
Q 013298 118 LQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAMVGYD 197 (446)
Q Consensus 118 ~~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~ 197 (446)
.+-+.+.++.++++||++.+++. +++|. . +.+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg---------e---t~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG---------E---DREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC---------C---CHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45577899999999999877653 24442 2 24566666666655444677777777777654433344
Q ss_pred ccCCC
Q 013298 198 FGIAP 202 (446)
Q Consensus 198 ~g~~~ 202 (446)
.|.+.
T Consensus 229 ~g~~~ 233 (302)
T TIGR01212 229 KGELK 233 (302)
T ss_pred cCCCC
Confidence 45443
No 228
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.57 E-value=1.9e+02 Score=27.78 Aligned_cols=61 Identities=8% Similarity=0.152 Sum_probs=38.9
Q ss_pred hhhchHHHHHHHHHcCCCEEEeccccccc-ccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 77 EYHKYKEDVKLMADTGLDAYRFSISWSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 77 ~y~~~~~Di~l~~~lG~~~~R~si~W~ri-~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
...+.++=|+.+++||++.+|+. ..... .|.. ..--...++.++++.+.+.++||+..+=-
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQLA-GYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEC-Cccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 34556777899999999999974 11111 1111 01112345667888888999999877643
No 229
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=20.42 E-value=4e+02 Score=28.65 Aligned_cols=94 Identities=10% Similarity=0.099 Sum_probs=52.6
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe----cCCCCcHhHHhh-----
Q 013298 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL----HHLDLPQALEDE----- 151 (446)
Q Consensus 81 ~~~Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL----~h~~~P~~l~~~----- 151 (446)
-+.|++...+.|++.+|+....+-+ +-....|+.+++.|.....++ .+-..|..+.+-
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv-------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~ 165 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDP-------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLL 165 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChH-------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 3457899999999999998655444 234455666666666554433 222222222110
Q ss_pred -----------hCCCCChHhHHHHHHHHHHHHHHhc-CcceEEEecCCCce
Q 013298 152 -----------YGGWINRMIVKDFTAYADVCFREFG-DRVSYWTTVNEPNG 190 (446)
Q Consensus 152 -----------~gg~~~~~~~~~f~~ya~~~~~~~~-~~v~~w~t~NEp~~ 190 (446)
-.|-.+| ....+.++.+.++++ +..-...+.|-..+
T Consensus 166 ~~Gad~I~IkDtaGll~P---~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl 213 (499)
T PRK12330 166 DMGADSICIKDMAALLKP---QPAYDIVKGIKEACGEDTRINLHCHSTTGV 213 (499)
T ss_pred HcCCCEEEeCCCccCCCH---HHHHHHHHHHHHhCCCCCeEEEEeCCCCCc
Confidence 1444553 455556666666775 33333556666543
No 230
>PRK15492 triosephosphate isomerase; Provisional
Probab=20.42 E-value=2.7e+02 Score=27.15 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=36.1
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCChhhHHHHHHHHHHHHHCCCEEEEEe
Q 013298 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (446)
Q Consensus 86 ~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 139 (446)
.+||++|++..=++-+=.|.. .++-| +...+-+..++++||.|+++.
T Consensus 88 ~mLkd~G~~~viiGHSERR~~---f~Etd----~~v~~Kv~~a~~~gl~pIvCi 134 (260)
T PRK15492 88 LMLKEIGTQLVMIGHSERRHK---FGETD----QEENAKVLAALKHDFTTLLCV 134 (260)
T ss_pred HHHHHcCCCEEEECccccccc---cCcch----HHHHHHHHHHHHCCCEEEEEc
Confidence 789999999998887655542 13333 345578889999999999998
No 231
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=20.38 E-value=2.6e+02 Score=26.75 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcHhHHhhhCCC---CChHhHHHHHHHHHHHHHHhcCcceE
Q 013298 120 YYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGW---INRMIVKDFTAYADVCFREFGDRVSY 181 (446)
Q Consensus 120 ~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~---~~~~~~~~f~~ya~~~~~~~~~~v~~ 181 (446)
..+++++.+.++|++-+.-.-|..+|..+.. ..| .+.+....+.+-++.+.++|+++++.
T Consensus 16 ~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I 78 (253)
T TIGR01856 16 TLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLKI 78 (253)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 4669999999999999999999775432211 112 12222334444445556778776543
No 232
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.34 E-value=82 Score=19.20 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.0
Q ss_pred HHHHHHHHHHCCCEE
Q 013298 121 YNNLINELISYGIQP 135 (446)
Q Consensus 121 y~~~i~~l~~~gi~p 135 (446)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 457888888889887
No 233
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.10 E-value=2.8e+02 Score=28.22 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=42.2
Q ss_pred chHHHHHHHHHcCCCEEEecc----c-------ccccccCC--------------------CCCCChhhHHHHHHHHHHH
Q 013298 80 KYKEDVKLMADTGLDAYRFSI----S-------WSRLIPNG--------------------RGPVNPKGLQYYNNLINEL 128 (446)
Q Consensus 80 ~~~~Di~l~~~lG~~~~R~si----~-------W~ri~P~~--------------------~g~~n~~~~~~y~~~i~~l 128 (446)
-.++-|+.|+..++|.+-+-+ + ++.+-..+ .|.+.++. ++++++.+
T Consensus 19 ~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~d---i~eiv~yA 95 (357)
T cd06563 19 EVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEE---IREIVAYA 95 (357)
T ss_pred HHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHH---HHHHHHHH
Confidence 356778999999999877654 2 22221100 14455555 56999999
Q ss_pred HHCCCEEEEEecCCCCcHhH
Q 013298 129 ISYGIQPHVTLHHLDLPQAL 148 (446)
Q Consensus 129 ~~~gi~p~vtL~h~~~P~~l 148 (446)
+++||++|.-+ |+|.-.
T Consensus 96 ~~rgI~VIPEI---D~PGH~ 112 (357)
T cd06563 96 AERGITVIPEI---DMPGHA 112 (357)
T ss_pred HHcCCEEEEec---CCchhH
Confidence 99999998876 566543
Done!