Query 013299
Match_columns 446
No_of_seqs 277 out of 2102
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 8.2E-43 1.8E-47 339.8 28.5 374 3-438 109-496 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 7.3E-40 1.6E-44 319.3 29.0 379 13-424 51-458 (966)
3 KOG4162 Predicted calmodulin-b 100.0 1.6E-35 3.6E-40 296.4 33.0 418 1-425 165-584 (799)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-32 2.3E-37 291.8 41.8 257 136-420 308-574 (615)
5 TIGR00990 3a0801s09 mitochondr 100.0 2E-31 4.3E-36 282.1 38.1 347 9-421 126-541 (615)
6 PRK15174 Vi polysaccharide exp 100.0 2.8E-31 6E-36 281.1 39.1 336 15-422 47-386 (656)
7 PRK11447 cellulose synthase su 100.0 3.2E-30 6.9E-35 289.8 39.7 353 15-416 274-739 (1157)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-29 2.2E-34 278.8 39.3 368 11-420 466-869 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-29 9.9E-34 273.7 39.7 368 11-419 23-428 (899)
10 PRK11447 cellulose synthase su 100.0 3.3E-29 7.1E-34 281.7 38.0 326 10-383 303-742 (1157)
11 PRK15174 Vi polysaccharide exp 100.0 2.5E-29 5.5E-34 266.2 33.3 300 69-421 48-351 (656)
12 PRK10049 pgaA outer membrane p 100.0 3.2E-26 6.8E-31 247.2 39.4 345 10-424 49-463 (765)
13 PRK09782 bacteriophage N4 rece 100.0 8E-26 1.7E-30 245.3 39.0 339 64-434 377-723 (987)
14 KOG2002 TPR-containing nuclear 100.0 8.8E-26 1.9E-30 231.5 31.9 394 8-444 305-762 (1018)
15 PRK10049 pgaA outer membrane p 100.0 5.3E-25 1.2E-29 237.7 37.8 338 15-421 20-426 (765)
16 PRK09782 bacteriophage N4 rece 100.0 1.8E-25 3.8E-30 242.7 34.1 256 136-422 490-745 (987)
17 KOG1126 DNA-binding cell divis 100.0 2.8E-26 6.1E-31 227.7 25.1 310 8-423 315-626 (638)
18 KOG1126 DNA-binding cell divis 99.9 1.3E-26 2.8E-31 230.1 21.5 258 153-444 345-603 (638)
19 PRK11788 tetratricopeptide rep 99.9 2E-24 4.4E-29 216.2 35.2 232 162-417 108-347 (389)
20 KOG0547 Translocase of outer m 99.9 5E-24 1.1E-28 204.3 34.9 237 161-420 326-569 (606)
21 PRK11788 tetratricopeptide rep 99.9 2.8E-24 6.1E-29 215.2 30.7 268 132-422 45-316 (389)
22 KOG0547 Translocase of outer m 99.9 6.4E-22 1.4E-26 189.9 29.6 227 131-383 335-568 (606)
23 PF13429 TPR_15: Tetratricopep 99.9 3.5E-24 7.5E-29 205.0 13.4 265 127-418 13-278 (280)
24 KOG2002 TPR-containing nuclear 99.9 9.4E-21 2E-25 194.8 36.0 346 11-419 165-527 (1018)
25 PRK12370 invasion protein regu 99.9 6.4E-22 1.4E-26 206.5 28.1 253 157-434 252-519 (553)
26 KOG1155 Anaphase-promoting com 99.9 5.8E-21 1.3E-25 182.4 30.6 346 12-417 166-536 (559)
27 PRK12370 invasion protein regu 99.9 1E-21 2.2E-26 205.0 26.7 263 137-433 276-551 (553)
28 KOG0624 dsRNA-activated protei 99.9 3.8E-21 8.3E-26 177.4 26.2 330 10-418 72-422 (504)
29 KOG1173 Anaphase-promoting com 99.9 1.1E-21 2.5E-26 191.4 23.8 379 10-421 82-522 (611)
30 KOG1155 Anaphase-promoting com 99.9 1.6E-20 3.4E-25 179.5 29.6 321 64-418 165-496 (559)
31 KOG1125 TPR repeat-containing 99.9 1.1E-21 2.3E-26 192.5 19.9 243 165-424 289-534 (579)
32 PRK14574 hmsH outer membrane p 99.9 1.2E-19 2.5E-24 193.9 36.2 361 10-426 34-522 (822)
33 PRK11189 lipoprotein NlpI; Pro 99.9 2.1E-20 4.5E-25 179.9 26.5 244 75-362 38-281 (296)
34 PRK11189 lipoprotein NlpI; Pro 99.9 2.1E-20 4.5E-25 179.9 26.1 239 134-403 38-286 (296)
35 KOG1173 Anaphase-promoting com 99.9 6.6E-20 1.4E-24 179.2 27.7 225 151-398 302-533 (611)
36 TIGR02521 type_IV_pilW type IV 99.9 7.7E-20 1.7E-24 168.1 25.6 204 159-417 29-232 (234)
37 KOG0548 Molecular co-chaperone 99.9 3.1E-19 6.8E-24 173.9 27.6 377 13-430 5-468 (539)
38 KOG1125 TPR repeat-containing 99.9 1.8E-20 3.8E-25 184.0 18.9 254 131-409 294-563 (579)
39 PF13429 TPR_15: Tetratricopep 99.9 2.6E-21 5.6E-26 185.2 11.3 241 157-424 6-250 (280)
40 TIGR00540 hemY_coli hemY prote 99.8 2.1E-18 4.7E-23 173.7 32.3 301 69-418 90-400 (409)
41 KOG2076 RNA polymerase III tra 99.8 6.1E-19 1.3E-23 180.6 27.9 311 69-415 145-510 (895)
42 KOG2003 TPR repeat-containing 99.8 1.4E-18 3E-23 165.5 26.7 264 130-421 427-693 (840)
43 TIGR00540 hemY_coli hemY prote 99.8 8E-18 1.7E-22 169.5 33.9 303 11-381 85-399 (409)
44 PLN02789 farnesyltranstransfer 99.8 5.5E-19 1.2E-23 170.2 24.1 238 157-417 33-302 (320)
45 PRK14574 hmsH outer membrane p 99.8 3.6E-17 7.7E-22 175.0 35.4 314 67-420 38-482 (822)
46 PRK10747 putative protoheme IX 99.8 5.1E-17 1.1E-21 163.0 34.0 252 135-418 131-391 (398)
47 KOG1174 Anaphase-promoting com 99.8 1.1E-17 2.3E-22 158.1 26.8 360 10-423 97-506 (564)
48 KOG4162 Predicted calmodulin-b 99.8 3.2E-17 6.8E-22 165.6 31.6 264 151-422 468-788 (799)
49 KOG2076 RNA polymerase III tra 99.8 7.7E-17 1.7E-21 165.3 34.3 353 10-416 139-554 (895)
50 KOG0624 dsRNA-activated protei 99.8 1.8E-17 3.8E-22 153.3 26.4 305 67-424 42-377 (504)
51 COG3063 PilF Tfp pilus assembl 99.8 8.1E-18 1.7E-22 148.4 23.0 203 162-383 36-238 (250)
52 PRK10747 putative protoheme IX 99.8 1.6E-16 3.6E-21 159.3 35.1 242 160-422 116-362 (398)
53 KOG1129 TPR repeat-containing 99.8 1.9E-18 4.2E-23 158.7 18.3 214 161-397 256-472 (478)
54 PLN02789 farnesyltranstransfer 99.8 1.5E-17 3.2E-22 160.3 24.2 227 138-383 53-304 (320)
55 KOG0548 Molecular co-chaperone 99.8 3.1E-17 6.7E-22 160.1 26.3 314 70-442 9-436 (539)
56 KOG1174 Anaphase-promoting com 99.8 2.8E-16 6E-21 148.6 31.1 307 15-391 201-508 (564)
57 TIGR02521 type_IV_pilW type IV 99.8 2.4E-17 5.2E-22 151.4 22.4 193 131-383 40-234 (234)
58 KOG1129 TPR repeat-containing 99.8 6.1E-18 1.3E-22 155.4 17.4 237 165-424 227-465 (478)
59 KOG0550 Molecular chaperone (D 99.7 4.9E-17 1.1E-21 153.8 16.9 267 129-420 56-353 (486)
60 KOG1840 Kinesin light chain [C 99.7 1.2E-15 2.5E-20 153.7 26.5 253 12-380 201-478 (508)
61 TIGR03302 OM_YfiO outer membra 99.7 5.7E-16 1.2E-20 144.2 21.1 199 156-418 28-233 (235)
62 COG3063 PilF Tfp pilus assembl 99.7 9.2E-16 2E-20 135.5 20.2 196 130-351 43-241 (250)
63 KOG1840 Kinesin light chain [C 99.7 1.1E-15 2.3E-20 153.9 23.4 251 156-420 194-482 (508)
64 cd05804 StaR_like StaR_like; a 99.7 4.4E-14 9.6E-19 139.7 33.3 207 9-261 5-215 (355)
65 cd05804 StaR_like StaR_like; a 99.7 5.2E-14 1.1E-18 139.2 33.5 311 63-418 6-337 (355)
66 PLN03218 maturation of RBCL 1; 99.7 5.3E-13 1.1E-17 146.8 44.3 258 130-417 515-783 (1060)
67 PRK15359 type III secretion sy 99.7 1.9E-16 4.1E-21 135.7 13.1 116 302-424 13-128 (144)
68 KOG2003 TPR repeat-containing 99.7 8.1E-15 1.8E-19 140.0 25.2 282 71-403 427-709 (840)
69 PLN03081 pentatricopeptide (PP 99.7 6E-14 1.3E-18 151.0 35.1 340 12-417 191-557 (697)
70 KOG0495 HAT repeat protein [RN 99.7 1E-13 2.2E-18 137.9 31.8 268 131-427 525-792 (913)
71 TIGR03302 OM_YfiO outer membra 99.7 2.3E-15 4.9E-20 140.2 19.1 180 189-439 27-217 (235)
72 PRK15359 type III secretion sy 99.7 8.5E-16 1.8E-20 131.6 14.8 127 252-401 13-139 (144)
73 COG2956 Predicted N-acetylgluc 99.7 2.9E-14 6.2E-19 131.5 24.6 264 131-419 44-313 (389)
74 KOG1127 TPR repeat-containing 99.7 2.6E-14 5.7E-19 147.6 26.9 335 62-418 491-914 (1238)
75 KOG0495 HAT repeat protein [RN 99.7 7E-13 1.5E-17 132.0 35.8 308 66-425 519-854 (913)
76 PRK10370 formate-dependent nit 99.7 1.7E-15 3.7E-20 136.7 16.0 121 296-420 53-176 (198)
77 PLN03218 maturation of RBCL 1; 99.7 3E-12 6.5E-17 141.0 43.9 327 16-382 443-784 (1060)
78 COG2956 Predicted N-acetylgluc 99.7 6.2E-14 1.3E-18 129.3 25.7 232 165-420 39-281 (389)
79 PLN03081 pentatricopeptide (PP 99.7 1.6E-13 3.5E-18 147.8 33.6 317 66-421 192-527 (697)
80 KOG0550 Molecular chaperone (D 99.7 9.8E-15 2.1E-19 138.4 19.0 176 199-383 173-352 (486)
81 PLN03077 Protein ECB2; Provisi 99.6 6.7E-13 1.5E-17 146.2 35.9 117 295-417 602-720 (857)
82 PRK10370 formate-dependent nit 99.6 1.4E-14 3.1E-19 130.7 15.7 127 174-351 52-178 (198)
83 TIGR02552 LcrH_SycD type III s 99.6 1.9E-14 4.1E-19 121.9 13.7 117 303-423 4-120 (135)
84 PLN03077 Protein ECB2; Provisi 99.6 5.5E-12 1.2E-16 139.0 36.3 192 14-260 226-417 (857)
85 COG5010 TadD Flp pilus assembl 99.6 2E-13 4.4E-18 123.2 19.9 178 180-379 52-229 (257)
86 KOG1128 Uncharacterized conser 99.6 1.7E-13 3.7E-18 138.3 20.1 222 163-422 400-621 (777)
87 PRK15179 Vi polysaccharide bio 99.6 1.9E-13 4.2E-18 144.0 20.8 148 181-383 72-219 (694)
88 PRK15179 Vi polysaccharide bio 99.5 2.4E-13 5.2E-18 143.3 19.1 134 271-419 86-219 (694)
89 KOG1156 N-terminal acetyltrans 99.5 1.6E-11 3.5E-16 122.6 30.3 337 12-419 9-436 (700)
90 PRK14720 transcript cleavage f 99.5 5.2E-13 1.1E-17 141.8 20.4 214 154-422 24-257 (906)
91 COG5010 TadD Flp pilus assembl 99.5 1E-12 2.2E-17 118.7 19.1 171 152-343 58-228 (257)
92 PRK15363 pathogenicity island 99.5 2.4E-13 5.3E-18 115.0 13.4 106 311-419 28-134 (157)
93 KOG1156 N-terminal acetyltrans 99.5 6.6E-12 1.4E-16 125.4 24.7 266 137-433 22-295 (700)
94 PF12569 NARP1: NMDA receptor- 99.5 1.7E-11 3.7E-16 125.0 28.5 269 131-420 13-337 (517)
95 KOG0553 TPR repeat-containing 99.5 3.2E-13 6.9E-18 124.1 12.1 108 294-405 93-200 (304)
96 PF12569 NARP1: NMDA receptor- 99.5 2.7E-11 5.8E-16 123.6 27.1 248 161-414 4-288 (517)
97 KOG1127 TPR repeat-containing 99.5 5.1E-12 1.1E-16 131.1 20.5 229 173-420 470-703 (1238)
98 TIGR02552 LcrH_SycD type III s 99.4 2.4E-12 5.3E-17 108.8 14.3 118 254-391 5-122 (135)
99 PRK04841 transcriptional regul 99.4 8.3E-10 1.8E-14 122.7 36.4 312 69-420 415-763 (903)
100 KOG0553 TPR repeat-containing 99.4 1E-12 2.2E-17 120.9 10.8 101 319-422 83-183 (304)
101 KOG3060 Uncharacterized conser 99.4 2.2E-10 4.7E-15 102.9 23.3 180 159-359 50-232 (289)
102 PRK14720 transcript cleavage f 99.4 2.5E-11 5.4E-16 129.2 20.2 232 131-421 40-310 (906)
103 KOG1130 Predicted G-alpha GTPa 99.3 2.8E-11 6E-16 115.0 14.6 231 165-424 99-351 (639)
104 PRK15363 pathogenicity island 99.3 1.9E-11 4.2E-16 103.5 11.9 107 154-263 27-134 (157)
105 KOG3785 Uncharacterized conser 99.3 2.9E-09 6.4E-14 99.7 26.8 327 13-416 60-421 (557)
106 PLN03088 SGT1, suppressor of 99.3 2.6E-11 5.6E-16 119.6 14.2 103 295-401 15-117 (356)
107 KOG2376 Signal recognition par 99.3 2E-08 4.4E-13 99.9 34.1 350 11-429 13-417 (652)
108 PRK04841 transcriptional regul 99.3 4.2E-09 9E-14 117.1 33.4 325 14-383 413-762 (903)
109 KOG2376 Signal recognition par 99.3 6.2E-10 1.4E-14 110.4 22.3 219 131-384 21-256 (652)
110 KOG1130 Predicted G-alpha GTPa 99.3 2.1E-11 4.6E-16 115.8 11.4 258 166-427 22-314 (639)
111 KOG1915 Cell cycle control pro 99.3 1.2E-07 2.7E-12 92.1 37.0 350 11-421 208-589 (677)
112 TIGR02795 tol_pal_ybgF tol-pal 99.3 7.1E-11 1.5E-15 97.1 12.6 109 317-425 2-113 (119)
113 COG3071 HemY Uncharacterized e 99.3 1.9E-08 4.2E-13 95.9 30.0 268 134-418 96-391 (400)
114 COG4783 Putative Zn-dependent 99.3 9.3E-10 2E-14 107.4 21.4 126 192-337 303-428 (484)
115 COG3071 HemY Uncharacterized e 99.3 3.9E-08 8.6E-13 93.8 31.7 296 10-381 84-390 (400)
116 PLN03088 SGT1, suppressor of 99.3 7.3E-11 1.6E-15 116.4 13.7 101 320-423 5-105 (356)
117 COG4235 Cytochrome c biogenesi 99.2 1.5E-10 3.2E-15 107.4 14.2 121 298-422 138-261 (287)
118 KOG3060 Uncharacterized conser 99.2 1.7E-09 3.7E-14 97.2 20.3 183 189-395 46-232 (289)
119 CHL00033 ycf3 photosystem I as 99.2 2.8E-10 6E-15 100.2 14.8 120 298-420 15-145 (168)
120 PF13414 TPR_11: TPR repeat; P 99.2 5E-11 1.1E-15 88.3 8.3 67 316-383 2-69 (69)
121 KOG1128 Uncharacterized conser 99.2 2.7E-10 5.8E-15 115.5 15.0 197 192-426 395-591 (777)
122 PF04733 Coatomer_E: Coatomer 99.2 8.3E-10 1.8E-14 105.4 17.8 202 160-389 65-271 (290)
123 COG4235 Cytochrome c biogenesi 99.2 3E-10 6.5E-15 105.4 13.8 124 176-350 137-260 (287)
124 PRK02603 photosystem I assembl 99.2 2.9E-10 6.3E-15 100.5 13.2 107 313-421 31-153 (172)
125 cd00189 TPR Tetratricopeptide 99.2 2.3E-10 5E-15 88.5 10.7 98 319-419 2-99 (100)
126 PF04733 Coatomer_E: Coatomer 99.2 8.8E-10 1.9E-14 105.2 16.6 251 135-420 14-268 (290)
127 PRK11906 transcriptional regul 99.2 1.1E-09 2.3E-14 107.6 17.4 155 248-413 274-432 (458)
128 PRK02603 photosystem I assembl 99.2 1E-09 2.3E-14 96.9 15.6 115 256-383 20-151 (172)
129 KOG4340 Uncharacterized conser 99.2 1.5E-09 3.2E-14 99.5 16.4 259 134-424 22-312 (459)
130 KOG1915 Cell cycle control pro 99.2 8E-07 1.7E-11 86.6 35.8 236 171-420 254-539 (677)
131 PRK10153 DNA-binding transcrip 99.2 7.3E-10 1.6E-14 113.8 15.9 139 271-422 339-487 (517)
132 TIGR02795 tol_pal_ybgF tol-pal 99.2 7.6E-10 1.7E-14 90.9 13.0 105 272-390 3-112 (119)
133 PF13414 TPR_11: TPR repeat; P 99.1 4.4E-11 9.5E-16 88.6 4.9 68 159-228 1-69 (69)
134 PF09976 TPR_21: Tetratricopep 99.1 3E-09 6.5E-14 91.2 16.1 115 297-415 26-145 (145)
135 KOG2047 mRNA splicing factor [ 99.1 7.5E-07 1.6E-11 89.7 34.3 213 188-419 342-581 (835)
136 cd00189 TPR Tetratricopeptide 99.1 9.2E-10 2E-14 85.0 11.3 98 273-383 2-99 (100)
137 PRK11906 transcriptional regul 99.1 4.6E-09 1E-13 103.2 18.3 180 155-380 242-435 (458)
138 COG4783 Putative Zn-dependent 99.1 2.3E-09 5E-14 104.7 16.1 121 294-418 318-438 (484)
139 PRK10153 DNA-binding transcrip 99.1 5.1E-09 1.1E-13 107.6 19.1 154 186-389 328-488 (517)
140 PRK10866 outer membrane biogen 99.1 1.3E-08 2.8E-13 94.9 20.0 201 159-413 30-237 (243)
141 CHL00033 ycf3 photosystem I as 99.1 1.8E-09 3.9E-14 95.0 13.5 101 270-383 34-151 (168)
142 PF13432 TPR_16: Tetratricopep 99.1 2.1E-10 4.5E-15 83.9 6.3 64 166-231 2-65 (65)
143 PF12895 Apc3: Anaphase-promot 99.1 4.9E-10 1.1E-14 86.5 8.7 82 330-414 2-84 (84)
144 PF13432 TPR_16: Tetratricopep 99.1 5.7E-10 1.2E-14 81.6 7.8 62 321-383 1-62 (65)
145 COG0457 NrfG FOG: TPR repeat [ 99.1 6.2E-07 1.3E-11 80.4 28.8 207 160-383 58-267 (291)
146 PF12895 Apc3: Anaphase-promot 99.0 5.8E-10 1.3E-14 86.1 7.3 80 296-378 3-84 (84)
147 PRK10866 outer membrane biogen 99.0 6.5E-08 1.4E-12 90.1 22.2 191 193-436 30-223 (243)
148 PF13525 YfiO: Outer membrane 99.0 2.7E-08 5.8E-13 90.4 18.4 189 160-408 4-198 (203)
149 PRK15331 chaperone protein Sic 99.0 2.4E-09 5.1E-14 91.3 10.4 108 305-416 26-133 (165)
150 PF12688 TPR_5: Tetratrico pep 99.0 9.4E-09 2E-13 84.3 12.8 98 317-416 1-103 (120)
151 COG0457 NrfG FOG: TPR repeat [ 99.0 1.3E-06 2.9E-11 78.3 27.0 224 174-420 36-268 (291)
152 KOG4340 Uncharacterized conser 99.0 2.6E-08 5.7E-13 91.5 15.1 215 172-412 21-265 (459)
153 PRK10803 tol-pal system protei 98.9 1.2E-08 2.6E-13 95.8 13.1 106 316-421 141-250 (263)
154 PF13525 YfiO: Outer membrane 98.9 1E-07 2.3E-12 86.5 18.5 110 296-426 56-179 (203)
155 PF14938 SNAP: Soluble NSF att 98.9 2.1E-08 4.6E-13 95.9 14.4 69 10-92 35-103 (282)
156 KOG0543 FKBP-type peptidyl-pro 98.9 8.9E-08 1.9E-12 92.1 16.5 145 199-383 212-357 (397)
157 KOG3785 Uncharacterized conser 98.9 8.2E-06 1.8E-10 77.0 28.8 364 10-426 91-498 (557)
158 KOG0543 FKBP-type peptidyl-pro 98.9 2.9E-08 6.2E-13 95.4 12.6 148 65-263 210-357 (397)
159 PRK10803 tol-pal system protei 98.9 3.9E-08 8.5E-13 92.3 13.3 91 296-389 157-252 (263)
160 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1.4E-08 3.1E-13 99.6 10.5 72 311-383 69-143 (453)
161 COG4785 NlpI Lipoprotein NlpI, 98.8 1.1E-07 2.4E-12 83.7 14.6 172 151-348 89-268 (297)
162 PF14559 TPR_19: Tetratricopep 98.8 1.3E-08 2.8E-13 74.9 7.6 64 329-395 3-66 (68)
163 PF12688 TPR_5: Tetratrico pep 98.8 5.8E-08 1.3E-12 79.7 11.9 97 272-381 2-104 (120)
164 PF13371 TPR_9: Tetratricopept 98.8 2.2E-08 4.7E-13 74.9 8.6 71 323-396 1-71 (73)
165 PF09976 TPR_21: Tetratricopep 98.8 7.4E-08 1.6E-12 82.6 13.1 119 245-379 24-145 (145)
166 KOG2047 mRNA splicing factor [ 98.8 2.6E-05 5.6E-10 78.9 32.0 248 150-416 338-614 (835)
167 PF14559 TPR_19: Tetratricopep 98.8 5.4E-09 1.2E-13 77.0 4.7 67 171-239 1-67 (68)
168 KOG1070 rRNA processing protei 98.8 7.3E-07 1.6E-11 96.4 22.0 219 177-418 1440-1664(1710)
169 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.1E-07 2.3E-12 94.0 14.8 112 296-414 183-294 (395)
170 PF13371 TPR_9: Tetratricopept 98.8 1.5E-08 3.2E-13 75.8 6.9 69 167-237 1-69 (73)
171 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 2.5E-08 5.4E-13 98.0 10.1 84 345-431 69-155 (453)
172 COG4785 NlpI Lipoprotein NlpI, 98.8 2E-07 4.3E-12 82.1 14.2 101 270-383 64-164 (297)
173 PF14938 SNAP: Soluble NSF att 98.8 3.9E-07 8.4E-12 87.2 17.5 211 165-418 39-267 (282)
174 KOG4234 TPR repeat-containing 98.7 1E-07 2.2E-12 82.9 10.2 104 322-427 100-207 (271)
175 KOG4648 Uncharacterized conser 98.7 6.8E-09 1.5E-13 96.9 2.5 225 129-383 104-332 (536)
176 PRK15331 chaperone protein Sic 98.7 2.6E-07 5.6E-12 78.9 11.3 90 295-389 50-139 (165)
177 KOG3081 Vesicle coat complex C 98.7 1.9E-05 4.1E-10 72.0 23.7 227 158-415 38-268 (299)
178 COG4700 Uncharacterized protei 98.7 3.1E-06 6.8E-11 73.0 17.5 134 273-421 91-226 (251)
179 PF06552 TOM20_plant: Plant sp 98.6 5.6E-07 1.2E-11 77.6 12.5 92 294-389 3-115 (186)
180 KOG4555 TPR repeat-containing 98.6 6.5E-07 1.4E-11 72.6 11.6 93 324-417 50-144 (175)
181 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 8.2E-07 1.8E-11 87.8 14.0 117 242-379 179-295 (395)
182 KOG4648 Uncharacterized conser 98.6 1.3E-07 2.9E-12 88.5 7.5 95 292-390 107-201 (536)
183 COG1729 Uncharacterized protei 98.6 1.4E-06 3E-11 80.3 14.0 104 320-423 144-250 (262)
184 COG4700 Uncharacterized protei 98.6 7E-06 1.5E-10 70.9 16.7 157 166-378 61-219 (251)
185 KOG3081 Vesicle coat complex C 98.5 2.4E-05 5.1E-10 71.4 20.6 193 166-383 77-273 (299)
186 PF13424 TPR_12: Tetratricopep 98.5 1.4E-07 3E-12 71.6 5.2 67 353-419 6-77 (78)
187 PF13424 TPR_12: Tetratricopep 98.5 5.1E-07 1.1E-11 68.4 7.6 69 314-382 2-76 (78)
188 KOG1941 Acetylcholine receptor 98.5 5.3E-06 1.2E-10 78.5 15.5 237 167-419 12-277 (518)
189 PF13512 TPR_18: Tetratricopep 98.5 3.1E-06 6.7E-11 70.8 12.3 108 316-423 9-134 (142)
190 COG4105 ComL DNA uptake lipopr 98.5 0.00013 2.8E-09 66.8 23.2 73 159-233 32-107 (254)
191 KOG4642 Chaperone-dependent E3 98.4 6.8E-07 1.5E-11 79.9 7.2 85 295-381 23-107 (284)
192 KOG4234 TPR repeat-containing 98.4 5.7E-06 1.2E-10 72.2 11.6 62 295-358 147-208 (271)
193 PF06552 TOM20_plant: Plant sp 98.4 9.1E-06 2E-10 70.2 12.5 84 272-358 26-120 (186)
194 KOG1070 rRNA processing protei 98.3 0.00014 3.1E-09 79.3 24.0 243 152-418 1449-1701(1710)
195 KOG2053 Mitochondrial inherita 98.3 0.00021 4.6E-09 75.0 24.6 230 133-383 20-257 (932)
196 PF13512 TPR_18: Tetratricopep 98.3 9.2E-06 2E-10 68.0 11.3 88 295-383 23-130 (142)
197 PF13431 TPR_17: Tetratricopep 98.3 6.8E-07 1.5E-11 55.9 3.2 32 305-337 2-33 (34)
198 KOG1941 Acetylcholine receptor 98.3 0.00026 5.7E-09 67.3 21.8 241 165-420 87-363 (518)
199 KOG4555 TPR repeat-containing 98.3 7E-06 1.5E-10 66.7 9.6 88 295-383 56-146 (175)
200 KOG2053 Mitochondrial inherita 98.3 0.00097 2.1E-08 70.3 27.7 84 175-261 23-106 (932)
201 COG1729 Uncharacterized protei 98.3 1.3E-05 2.9E-10 73.9 12.7 95 295-392 154-253 (262)
202 COG4105 ComL DNA uptake lipopr 98.3 0.00024 5.1E-09 65.1 20.6 198 193-418 32-233 (254)
203 PF04184 ST7: ST7 protein; In 98.3 9.2E-05 2E-09 73.4 18.9 192 200-426 173-384 (539)
204 COG3898 Uncharacterized membra 98.3 0.0038 8.2E-08 60.2 28.9 254 71-381 128-392 (531)
205 PF13428 TPR_14: Tetratricopep 98.2 1.3E-06 2.9E-11 58.2 4.1 41 162-202 2-42 (44)
206 PF13428 TPR_14: Tetratricopep 98.2 1.8E-06 3.9E-11 57.6 4.7 42 318-360 2-43 (44)
207 PF13431 TPR_17: Tetratricopep 98.2 6.4E-07 1.4E-11 56.0 2.0 33 183-215 1-33 (34)
208 KOG4642 Chaperone-dependent E3 98.2 5.1E-06 1.1E-10 74.4 7.9 103 323-428 16-118 (284)
209 KOG2796 Uncharacterized conser 98.2 0.00028 6.2E-09 64.4 18.8 124 296-422 191-320 (366)
210 KOG3617 WD40 and TPR repeat-co 98.2 0.0035 7.6E-08 65.6 28.3 27 388-414 1145-1171(1416)
211 COG3898 Uncharacterized membra 98.0 0.014 2.9E-07 56.6 27.3 248 135-417 133-392 (531)
212 PF00515 TPR_1: Tetratricopept 98.0 1.1E-05 2.4E-10 50.3 4.3 32 318-349 2-33 (34)
213 PF05843 Suf: Suppressor of fo 98.0 0.00043 9.3E-09 66.1 16.8 125 294-420 13-139 (280)
214 PF07719 TPR_2: Tetratricopept 98.0 2E-05 4.3E-10 49.0 5.0 33 318-350 2-34 (34)
215 PF04184 ST7: ST7 protein; In 97.9 0.0011 2.4E-08 66.0 18.8 213 173-420 180-417 (539)
216 KOG0376 Serine-threonine phosp 97.9 1.6E-05 3.5E-10 78.2 5.3 92 296-391 18-109 (476)
217 PF13281 DUF4071: Domain of un 97.9 0.0035 7.5E-08 61.4 21.1 181 160-389 140-340 (374)
218 KOG2471 TPR repeat-containing 97.8 0.00024 5.2E-09 69.9 12.6 81 127-207 288-381 (696)
219 PF10300 DUF3808: Protein of u 97.8 0.0014 3.1E-08 67.1 18.7 189 217-420 179-379 (468)
220 KOG2610 Uncharacterized conser 97.8 0.00064 1.4E-08 64.1 14.5 165 199-379 107-274 (491)
221 PF00515 TPR_1: Tetratricopept 97.8 5.5E-05 1.2E-09 47.1 4.7 31 353-383 2-32 (34)
222 KOG0545 Aryl-hydrocarbon recep 97.8 0.00025 5.4E-09 64.0 10.5 123 63-233 178-300 (329)
223 KOG2796 Uncharacterized conser 97.8 0.00066 1.4E-08 62.0 13.3 138 197-383 179-317 (366)
224 KOG2610 Uncharacterized conser 97.8 0.0019 4.1E-08 61.1 16.5 149 245-414 116-273 (491)
225 KOG3617 WD40 and TPR repeat-co 97.8 0.0017 3.6E-08 67.8 17.4 226 130-414 736-993 (1416)
226 PF07719 TPR_2: Tetratricopept 97.7 3.4E-05 7.3E-10 47.9 3.4 34 195-230 1-34 (34)
227 KOG3616 Selective LIM binding 97.7 0.029 6.2E-07 58.3 25.5 59 362-420 960-1027(1636)
228 KOG0376 Serine-threonine phosp 97.7 2.5E-05 5.3E-10 77.0 3.6 99 323-424 10-108 (476)
229 COG2976 Uncharacterized protei 97.7 0.0014 3E-08 57.5 13.8 114 301-418 71-189 (207)
230 KOG0545 Aryl-hydrocarbon recep 97.7 0.00053 1.2E-08 62.0 10.9 106 319-426 180-302 (329)
231 KOG1586 Protein required for f 97.6 0.006 1.3E-07 55.0 16.8 136 201-350 80-228 (288)
232 PF03704 BTAD: Bacterial trans 97.6 0.0035 7.5E-08 53.4 15.0 65 353-419 63-127 (146)
233 COG0790 FOG: TPR repeat, SEL1 97.6 0.042 9.2E-07 52.6 23.9 169 196-383 74-268 (292)
234 PF05843 Suf: Suppressor of fo 97.6 0.0037 8.1E-08 59.7 16.1 134 197-383 3-138 (280)
235 COG3118 Thioredoxin domain-con 97.6 0.0088 1.9E-07 56.0 17.7 152 160-366 133-286 (304)
236 PF12968 DUF3856: Domain of Un 97.5 0.0082 1.8E-07 48.2 14.4 101 318-420 8-132 (144)
237 COG3118 Thioredoxin domain-con 97.5 0.003 6.5E-08 59.0 13.9 117 295-418 147-266 (304)
238 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00069 1.5E-08 63.9 9.6 100 278-383 81-184 (390)
239 KOG1585 Protein required for f 97.5 0.011 2.5E-07 53.6 16.9 61 162-222 32-98 (308)
240 PF13181 TPR_8: Tetratricopept 97.5 0.00025 5.4E-09 44.0 4.6 32 318-349 2-33 (34)
241 PF10300 DUF3808: Protein of u 97.4 0.0018 3.9E-08 66.4 12.7 119 135-260 246-375 (468)
242 KOG1308 Hsp70-interacting prot 97.4 0.0001 2.2E-09 69.7 3.0 115 296-415 128-242 (377)
243 PF14561 TPR_20: Tetratricopep 97.4 0.002 4.4E-08 50.0 9.7 49 301-350 7-55 (90)
244 KOG1586 Protein required for f 97.3 0.017 3.7E-07 52.2 16.1 73 174-261 27-102 (288)
245 KOG0530 Protein farnesyltransf 97.3 0.012 2.7E-07 53.9 15.4 118 299-420 60-179 (318)
246 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0013 2.9E-08 62.0 9.5 102 320-423 84-188 (390)
247 KOG0530 Protein farnesyltransf 97.3 0.006 1.3E-07 55.9 13.1 174 170-400 52-233 (318)
248 PF13281 DUF4071: Domain of un 97.3 0.027 5.8E-07 55.3 18.5 120 297-419 197-336 (374)
249 PF02259 FAT: FAT domain; Int 97.3 0.15 3.3E-06 49.9 24.4 154 158-330 143-305 (352)
250 KOG1550 Extracellular protein 97.2 0.052 1.1E-06 57.0 20.9 232 158-417 241-504 (552)
251 PF13181 TPR_8: Tetratricopept 97.2 0.00077 1.7E-08 41.7 4.5 31 353-383 2-32 (34)
252 KOG1585 Protein required for f 97.2 0.071 1.5E-06 48.6 18.2 50 328-377 121-175 (308)
253 COG2909 MalT ATP-dependent tra 97.1 0.21 4.5E-06 53.5 23.7 266 130-419 355-649 (894)
254 PF14561 TPR_20: Tetratricopep 97.1 0.0079 1.7E-07 46.7 10.2 80 336-416 7-86 (90)
255 PF03704 BTAD: Bacterial trans 97.1 0.018 3.8E-07 49.0 13.3 61 318-379 63-123 (146)
256 COG0790 FOG: TPR repeat, SEL1 97.0 0.047 1E-06 52.3 17.1 188 134-349 53-269 (292)
257 KOG1914 mRNA cleavage and poly 97.0 0.11 2.4E-06 52.5 19.4 219 183-421 267-505 (656)
258 KOG3824 Huntingtin interacting 96.9 0.0032 6.9E-08 58.9 7.5 65 294-360 128-192 (472)
259 PF13174 TPR_6: Tetratricopept 96.9 0.0019 4.2E-08 39.4 4.1 31 319-349 2-32 (33)
260 KOG1550 Extracellular protein 96.9 0.073 1.6E-06 55.9 18.2 182 177-381 228-426 (552)
261 KOG1308 Hsp70-interacting prot 96.8 0.00048 1E-08 65.2 1.4 86 330-418 127-212 (377)
262 KOG1914 mRNA cleavage and poly 96.8 0.74 1.6E-05 46.8 24.9 69 154-223 13-81 (656)
263 KOG2471 TPR repeat-containing 96.8 0.0068 1.5E-07 60.1 8.9 129 296-425 220-372 (696)
264 PF08424 NRDE-2: NRDE-2, neces 96.7 0.068 1.5E-06 52.1 15.8 110 151-262 9-132 (321)
265 PF13174 TPR_6: Tetratricopept 96.7 0.0035 7.5E-08 38.2 4.3 30 354-383 2-31 (33)
266 COG3914 Spy Predicted O-linked 96.7 0.024 5.2E-07 57.6 12.2 123 299-425 48-179 (620)
267 PF13176 TPR_7: Tetratricopept 96.7 0.0038 8.2E-08 39.3 4.4 26 320-345 2-27 (36)
268 PF13176 TPR_7: Tetratricopept 96.7 0.0045 9.8E-08 39.0 4.6 25 355-379 2-26 (36)
269 COG2976 Uncharacterized protei 96.6 0.11 2.4E-06 45.8 14.6 85 295-383 102-190 (207)
270 KOG3616 Selective LIM binding 96.6 1.1 2.5E-05 47.0 25.8 76 12-91 492-572 (1636)
271 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.012 2.6E-07 40.6 6.9 38 319-357 3-40 (53)
272 PF04781 DUF627: Protein of un 96.6 0.03 6.4E-07 44.7 10.0 107 201-347 2-108 (111)
273 PF04910 Tcf25: Transcriptiona 96.6 0.11 2.4E-06 51.3 16.5 103 318-420 104-225 (360)
274 KOG2300 Uncharacterized conser 96.6 0.48 1E-05 47.5 20.3 218 174-412 288-551 (629)
275 PF07079 DUF1347: Protein of u 96.6 0.87 1.9E-05 45.3 26.4 200 169-378 306-521 (549)
276 PF08631 SPO22: Meiosis protei 96.6 0.68 1.5E-05 44.1 23.8 125 133-262 4-151 (278)
277 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.01 2.2E-07 40.9 6.4 46 353-400 2-47 (53)
278 PRK10941 hypothetical protein; 96.5 0.024 5.1E-07 53.5 10.7 76 319-397 183-258 (269)
279 PF07079 DUF1347: Protein of u 96.5 0.98 2.1E-05 45.0 29.2 50 360-412 470-519 (549)
280 PF08424 NRDE-2: NRDE-2, neces 96.5 0.26 5.7E-06 48.0 18.4 124 297-422 46-188 (321)
281 smart00028 TPR Tetratricopepti 96.5 0.0041 9E-08 36.8 3.7 32 196-229 2-33 (34)
282 KOG2300 Uncharacterized conser 96.5 1.1 2.4E-05 44.9 31.1 120 295-418 336-475 (629)
283 PF02259 FAT: FAT domain; Int 96.5 0.66 1.4E-05 45.4 21.1 113 313-426 142-296 (352)
284 KOG3364 Membrane protein invol 96.5 0.025 5.5E-07 46.6 8.8 82 317-400 32-117 (149)
285 PF09613 HrpB1_HrpK: Bacterial 96.4 0.059 1.3E-06 46.2 11.2 109 294-410 22-131 (160)
286 smart00028 TPR Tetratricopepti 96.4 0.0052 1.1E-07 36.3 3.7 30 354-383 3-32 (34)
287 PF13374 TPR_10: Tetratricopep 96.4 0.0066 1.4E-07 39.2 4.2 40 10-49 2-41 (42)
288 KOG3824 Huntingtin interacting 96.3 0.012 2.7E-07 55.0 7.3 82 298-398 113-194 (472)
289 KOG0529 Protein geranylgeranyl 96.3 0.19 4.1E-06 49.2 15.2 100 296-399 89-194 (421)
290 PF09613 HrpB1_HrpK: Bacterial 96.3 0.12 2.6E-06 44.3 12.3 84 319-405 12-95 (160)
291 PF04910 Tcf25: Transcriptiona 96.2 0.24 5.1E-06 49.0 16.1 162 153-317 32-227 (360)
292 KOG0985 Vesicle coat protein c 96.1 2.7 5.9E-05 46.0 26.4 210 158-411 1101-1335(1666)
293 PRK10941 hypothetical protein; 96.1 0.03 6.6E-07 52.7 8.9 72 164-237 184-255 (269)
294 PF12968 DUF3856: Domain of Un 96.1 0.18 3.9E-06 40.7 11.7 85 295-381 22-129 (144)
295 KOG4507 Uncharacterized conser 96.1 0.0079 1.7E-07 60.8 4.9 99 324-424 614-712 (886)
296 COG4976 Predicted methyltransf 96.0 0.0095 2.1E-07 53.6 4.7 61 170-232 4-64 (287)
297 PF04190 DUF410: Protein of un 95.9 1.3 2.7E-05 41.8 18.8 138 179-329 75-240 (260)
298 COG4976 Predicted methyltransf 95.8 0.018 3.8E-07 51.9 5.2 53 297-350 10-62 (287)
299 COG4649 Uncharacterized protei 95.6 0.74 1.6E-05 40.0 14.2 62 14-92 62-123 (221)
300 KOG0985 Vesicle coat protein c 95.6 3.4 7.4E-05 45.3 21.7 286 71-421 992-1312(1666)
301 TIGR02561 HrpB1_HrpK type III 95.5 0.23 5E-06 41.9 10.5 73 295-369 23-95 (153)
302 COG4649 Uncharacterized protei 95.4 1.6 3.5E-05 37.9 15.7 43 318-362 168-210 (221)
303 KOG4507 Uncharacterized conser 95.4 0.08 1.7E-06 53.9 8.8 101 295-399 620-721 (886)
304 KOG2396 HAT (Half-A-TPR) repea 95.3 0.18 3.9E-06 50.6 11.0 90 299-392 88-178 (568)
305 KOG3783 Uncharacterized conser 95.3 0.89 1.9E-05 46.2 15.8 237 154-418 260-521 (546)
306 PF13374 TPR_10: Tetratricopep 95.1 0.05 1.1E-06 34.9 4.6 28 319-346 4-31 (42)
307 KOG2396 HAT (Half-A-TPR) repea 95.1 0.13 2.7E-06 51.6 9.1 84 150-235 94-178 (568)
308 PF09986 DUF2225: Uncharacteri 95.1 0.19 4.1E-06 45.8 9.7 65 353-417 119-194 (214)
309 COG3914 Spy Predicted O-linked 95.1 3.5 7.5E-05 42.5 19.2 133 174-360 44-184 (620)
310 KOG1310 WD40 repeat protein [G 95.0 0.15 3.3E-06 51.3 9.5 86 296-383 388-476 (758)
311 PRK15180 Vi polysaccharide bio 95.0 0.12 2.5E-06 51.5 8.6 126 296-425 303-428 (831)
312 PF09986 DUF2225: Uncharacteri 94.8 0.38 8.3E-06 43.8 11.1 88 135-222 90-192 (214)
313 PF04781 DUF627: Protein of un 94.8 0.35 7.7E-06 38.7 9.2 98 293-417 7-107 (111)
314 PF10345 Cohesin_load: Cohesin 94.7 4.2 9E-05 43.4 20.3 55 165-219 365-428 (608)
315 TIGR02561 HrpB1_HrpK type III 94.7 0.16 3.5E-06 42.8 7.5 75 328-405 21-95 (153)
316 KOG1310 WD40 repeat protein [G 94.7 0.12 2.5E-06 52.1 7.7 105 330-437 387-498 (758)
317 KOG0529 Protein geranylgeranyl 94.6 0.74 1.6E-05 45.3 12.8 169 151-327 53-239 (421)
318 PF10602 RPN7: 26S proteasome 94.6 0.61 1.3E-05 41.2 11.4 99 317-415 36-140 (177)
319 KOG3364 Membrane protein invol 94.3 0.35 7.7E-06 40.0 8.4 61 295-357 48-110 (149)
320 PF07720 TPR_3: Tetratricopept 94.0 0.18 3.9E-06 31.7 4.9 32 318-349 2-35 (36)
321 PF08631 SPO22: Meiosis protei 93.9 6 0.00013 37.6 26.9 133 74-223 4-149 (278)
322 PF10345 Cohesin_load: Cohesin 93.9 10 0.00023 40.4 32.2 314 79-418 37-434 (608)
323 KOG1258 mRNA processing protei 93.8 9.3 0.0002 39.6 19.8 185 162-366 298-489 (577)
324 KOG0890 Protein kinase of the 93.7 11 0.00024 45.2 21.6 236 170-420 1458-1734(2382)
325 KOG1839 Uncharacterized protei 93.5 1 2.3E-05 50.3 12.8 124 314-437 1012-1148(1236)
326 COG4941 Predicted RNA polymera 93.2 4.4 9.4E-05 39.0 14.7 37 17-53 20-57 (415)
327 PF07721 TPR_4: Tetratricopept 93.2 0.13 2.8E-06 29.6 3.1 24 196-219 2-25 (26)
328 COG4941 Predicted RNA polymera 93.2 8.4 0.00018 37.1 16.5 123 296-420 270-397 (415)
329 KOG2041 WD40 repeat protein [G 93.0 5.7 0.00012 41.9 16.2 185 177-411 679-875 (1189)
330 COG2912 Uncharacterized conser 93.0 0.7 1.5E-05 43.1 9.1 73 321-396 185-257 (269)
331 PF12862 Apc5: Anaphase-promot 92.8 0.75 1.6E-05 35.8 8.0 53 329-381 10-70 (94)
332 COG5107 RNA14 Pre-mRNA 3'-end 92.7 12 0.00026 37.6 21.3 241 151-420 292-534 (660)
333 COG5191 Uncharacterized conser 92.7 0.17 3.7E-06 47.8 4.6 78 156-235 102-180 (435)
334 COG5191 Uncharacterized conser 92.7 0.18 3.8E-06 47.7 4.7 85 304-392 95-180 (435)
335 PF07720 TPR_3: Tetratricopept 92.6 0.19 4.1E-06 31.5 3.4 34 195-230 1-36 (36)
336 PRK15180 Vi polysaccharide bio 92.5 1.1 2.3E-05 45.0 10.1 111 152-265 314-424 (831)
337 KOG1258 mRNA processing protei 92.5 15 0.00032 38.2 26.6 252 150-409 68-421 (577)
338 PF07721 TPR_4: Tetratricopept 92.2 0.19 4.1E-06 28.9 2.8 22 319-340 3-24 (26)
339 KOG3807 Predicted membrane pro 92.2 12 0.00025 36.2 16.1 57 200-261 189-245 (556)
340 COG5107 RNA14 Pre-mRNA 3'-end 92.0 13 0.00027 37.5 16.5 209 182-420 289-498 (660)
341 PF11207 DUF2989: Protein of u 92.0 1 2.2E-05 40.2 8.5 73 299-372 123-198 (203)
342 PF10516 SHNi-TPR: SHNi-TPR; 91.9 0.37 8E-06 30.6 4.1 33 389-421 2-34 (38)
343 PF10373 EST1_DNA_bind: Est1 D 91.5 0.85 1.8E-05 43.1 8.2 62 301-364 1-62 (278)
344 PF12862 Apc5: Anaphase-promot 91.5 1.1 2.4E-05 34.9 7.4 63 363-425 9-78 (94)
345 PRK13184 pknD serine/threonine 91.3 2.1 4.6E-05 47.4 11.8 129 294-427 487-630 (932)
346 KOG4814 Uncharacterized conser 91.3 3.4 7.3E-05 43.0 12.2 99 319-419 356-459 (872)
347 COG2909 MalT ATP-dependent tra 90.8 28 0.00061 38.0 29.2 243 160-414 414-685 (894)
348 PRK13184 pknD serine/threonine 90.8 5.1 0.00011 44.6 14.1 130 245-383 488-622 (932)
349 PF10373 EST1_DNA_bind: Est1 D 90.8 0.79 1.7E-05 43.3 7.2 62 336-400 1-62 (278)
350 KOG1464 COP9 signalosome, subu 90.8 14 0.00031 34.5 15.9 208 174-431 40-270 (440)
351 COG2912 Uncharacterized conser 90.4 1.3 2.8E-05 41.4 7.8 69 166-236 186-254 (269)
352 PF04053 Coatomer_WDAD: Coatom 90.1 22 0.00048 36.3 17.2 128 208-380 274-401 (443)
353 COG3629 DnrI DNA-binding trans 89.8 1.4 3.1E-05 41.6 7.8 60 163-222 155-214 (280)
354 COG3629 DnrI DNA-binding trans 89.6 2.6 5.5E-05 39.9 9.3 64 316-380 152-215 (280)
355 PF10579 Rapsyn_N: Rapsyn N-te 89.4 4.5 9.7E-05 30.3 8.4 60 358-419 12-74 (80)
356 KOG2041 WD40 repeat protein [G 89.4 33 0.00071 36.5 28.9 184 14-258 738-936 (1189)
357 PF11207 DUF2989: Protein of u 89.2 6.1 0.00013 35.3 10.8 100 213-337 95-198 (203)
358 KOG4814 Uncharacterized conser 88.7 8.2 0.00018 40.3 12.6 87 293-381 365-457 (872)
359 PF10579 Rapsyn_N: Rapsyn N-te 88.7 2.4 5.1E-05 31.7 6.6 59 322-381 11-72 (80)
360 PF10602 RPN7: 26S proteasome 88.6 3.8 8.2E-05 36.1 9.2 14 296-309 127-140 (177)
361 KOG1464 COP9 signalosome, subu 88.5 22 0.00048 33.4 16.6 50 134-188 39-92 (440)
362 PF10516 SHNi-TPR: SHNi-TPR; 88.4 0.82 1.8E-05 29.1 3.5 27 354-380 3-29 (38)
363 KOG1538 Uncharacterized conser 87.2 9.7 0.00021 39.9 12.1 84 131-222 712-800 (1081)
364 KOG4279 Serine/threonine prote 86.4 5.8 0.00013 42.1 10.1 179 194-383 200-397 (1226)
365 PRK11619 lytic murein transgly 85.9 55 0.0012 35.2 24.5 115 297-416 256-374 (644)
366 PF00244 14-3-3: 14-3-3 protei 85.2 21 0.00045 33.0 12.6 175 164-345 4-197 (236)
367 KOG1538 Uncharacterized conser 85.0 51 0.0011 34.9 15.8 89 311-413 741-829 (1081)
368 KOG1839 Uncharacterized protei 84.3 4.7 0.0001 45.4 8.9 119 299-419 955-1088(1236)
369 COG3947 Response regulator con 83.7 4.3 9.3E-05 38.3 7.1 53 168-220 286-338 (361)
370 COG3947 Response regulator con 83.4 4.3 9.4E-05 38.3 7.0 57 321-378 283-339 (361)
371 smart00299 CLH Clathrin heavy 83.2 25 0.00054 29.1 12.4 47 172-219 18-64 (140)
372 PF13041 PPR_2: PPR repeat fam 83.1 4.5 9.8E-05 27.0 5.5 39 194-232 2-40 (50)
373 smart00386 HAT HAT (Half-A-TPR 82.4 1.7 3.7E-05 25.6 2.9 28 176-203 2-29 (33)
374 KOG2422 Uncharacterized conser 82.4 67 0.0015 33.5 16.7 34 189-222 278-311 (665)
375 PRK12798 chemotaxis protein; R 82.2 58 0.0013 32.6 20.6 58 319-376 259-319 (421)
376 PF11846 DUF3366: Domain of un 81.9 16 0.00034 32.5 10.1 47 370-419 129-175 (193)
377 TIGR03504 FimV_Cterm FimV C-te 80.5 2.8 6E-05 27.6 3.4 24 199-222 3-26 (44)
378 PF10255 Paf67: RNA polymerase 80.0 9.6 0.00021 38.1 8.6 57 166-222 127-191 (404)
379 KOG4014 Uncharacterized conser 79.8 43 0.00093 29.6 16.8 77 159-240 32-114 (248)
380 KOG0128 RNA-binding protein SA 79.6 99 0.0021 33.7 22.7 108 152-262 104-220 (881)
381 KOG0890 Protein kinase of the 79.4 1.6E+02 0.0035 36.1 23.2 82 298-382 1645-1732(2382)
382 PF12854 PPR_1: PPR repeat 79.0 4.9 0.00011 24.6 4.1 27 194-220 6-32 (34)
383 KOG2581 26S proteasome regulat 79.0 73 0.0016 31.8 13.9 18 205-222 136-153 (493)
384 KOG2422 Uncharacterized conser 78.9 88 0.0019 32.7 18.5 164 247-419 253-450 (665)
385 PF10255 Paf67: RNA polymerase 78.4 7.5 0.00016 38.9 7.3 27 353-379 165-191 (404)
386 KOG2114 Vacuolar assembly/sort 78.2 70 0.0015 34.9 14.4 112 323-439 496-612 (933)
387 cd02682 MIT_AAA_Arch MIT: doma 78.1 5.6 0.00012 29.5 4.8 35 9-43 5-39 (75)
388 KOG1920 IkappaB kinase complex 77.7 1.3E+02 0.0029 34.1 21.3 20 71-90 685-704 (1265)
389 PF15015 NYD-SP12_N: Spermatog 76.7 12 0.00027 37.2 8.0 84 293-378 187-288 (569)
390 smart00299 CLH Clathrin heavy 76.4 43 0.00092 27.7 10.7 44 296-341 21-64 (140)
391 PF14863 Alkyl_sulf_dimr: Alky 76.3 20 0.00042 30.3 8.2 52 315-367 68-119 (141)
392 TIGR03504 FimV_Cterm FimV C-te 76.1 5.1 0.00011 26.4 3.7 25 321-345 3-27 (44)
393 smart00386 HAT HAT (Half-A-TPR 75.8 6.4 0.00014 22.9 4.0 26 332-358 2-27 (33)
394 COG4455 ImpE Protein of avirul 75.5 18 0.0004 32.8 8.1 58 293-351 12-69 (273)
395 COG4455 ImpE Protein of avirul 73.9 16 0.00035 33.2 7.4 57 326-383 10-66 (273)
396 PF04053 Coatomer_WDAD: Coatom 73.9 34 0.00074 34.9 10.9 102 295-417 274-376 (443)
397 PF04190 DUF410: Protein of un 73.8 61 0.0013 30.4 11.9 81 298-381 73-170 (260)
398 PF15015 NYD-SP12_N: Spermatog 73.7 26 0.00057 34.9 9.3 82 10-92 176-257 (569)
399 cd02679 MIT_spastin MIT: domai 73.7 7 0.00015 29.4 4.4 36 367-419 4-39 (79)
400 COG1747 Uncharacterized N-term 72.4 1.2E+02 0.0027 31.2 20.4 74 182-261 87-160 (711)
401 PF12854 PPR_1: PPR repeat 72.1 11 0.00023 23.1 4.3 25 317-341 7-31 (34)
402 cd02680 MIT_calpain7_2 MIT: do 71.5 8.7 0.00019 28.5 4.4 18 364-381 18-35 (75)
403 PF11846 DUF3366: Domain of un 71.4 19 0.0004 32.0 7.6 51 297-349 126-176 (193)
404 TIGR00756 PPR pentatricopeptid 71.2 9.6 0.00021 22.4 4.1 25 198-222 3-27 (35)
405 PF14863 Alkyl_sulf_dimr: Alky 70.8 18 0.00039 30.5 6.8 53 353-407 71-123 (141)
406 cd02681 MIT_calpain7_1 MIT: do 70.5 8.5 0.00018 28.7 4.2 31 10-40 6-36 (76)
407 cd02679 MIT_spastin MIT: domai 69.8 12 0.00026 28.1 4.9 35 10-44 8-42 (79)
408 KOG0546 HSP90 co-chaperone CPR 68.9 3.9 8.5E-05 39.6 2.6 78 314-394 272-349 (372)
409 COG1747 Uncharacterized N-term 68.2 1.5E+02 0.0033 30.6 15.4 174 153-350 92-292 (711)
410 PF04212 MIT: MIT (microtubule 67.5 11 0.00025 27.2 4.3 32 11-42 6-37 (69)
411 cd02681 MIT_calpain7_1 MIT: do 67.1 18 0.0004 26.9 5.4 29 392-420 10-38 (76)
412 KOG4014 Uncharacterized conser 67.1 92 0.002 27.7 15.2 170 136-347 49-234 (248)
413 PF00244 14-3-3: 14-3-3 protei 66.6 72 0.0016 29.5 10.5 116 319-438 3-120 (236)
414 PF13041 PPR_2: PPR repeat fam 66.5 28 0.0006 23.0 5.9 29 353-381 4-32 (50)
415 PF09670 Cas_Cas02710: CRISPR- 65.7 71 0.0015 31.9 11.0 116 295-419 144-272 (379)
416 PF13226 DUF4034: Domain of un 65.7 95 0.0021 29.5 11.1 131 170-332 9-148 (277)
417 cd02683 MIT_1 MIT: domain cont 65.6 11 0.00025 28.1 4.1 32 10-41 6-37 (77)
418 cd02682 MIT_AAA_Arch MIT: doma 65.4 32 0.0007 25.5 6.3 22 369-392 30-51 (75)
419 PF04212 MIT: MIT (microtubule 62.7 16 0.00035 26.3 4.4 30 391-420 8-37 (69)
420 KOG0546 HSP90 co-chaperone CPR 62.0 8.7 0.00019 37.3 3.5 67 166-234 280-346 (372)
421 PF09205 DUF1955: Domain of un 61.7 68 0.0015 26.9 8.1 80 134-222 68-147 (161)
422 PHA02537 M terminase endonucle 60.8 22 0.00048 32.7 5.8 19 243-261 94-112 (230)
423 PF11817 Foie-gras_1: Foie gra 59.8 68 0.0015 29.8 9.2 20 71-90 18-37 (247)
424 PF09670 Cas_Cas02710: CRISPR- 59.8 74 0.0016 31.8 9.9 59 199-260 135-197 (379)
425 cd02683 MIT_1 MIT: domain cont 57.0 22 0.00048 26.5 4.3 30 391-420 9-38 (77)
426 PF08238 Sel1: Sel1 repeat; I 56.9 24 0.00052 21.6 4.0 28 318-345 2-36 (39)
427 smart00745 MIT Microtubule Int 56.0 22 0.00048 26.2 4.2 34 11-44 9-42 (77)
428 PF01239 PPTA: Protein prenylt 55.4 41 0.00089 19.8 4.6 24 338-362 4-27 (31)
429 PF11817 Foie-gras_1: Foie gra 55.1 1E+02 0.0022 28.6 9.5 72 6-90 174-245 (247)
430 KOG2581 26S proteasome regulat 55.0 1E+02 0.0022 30.8 9.5 59 324-383 216-278 (493)
431 PF13812 PPR_3: Pentatricopept 53.9 30 0.00065 20.2 4.0 26 197-222 3-28 (34)
432 cd02680 MIT_calpain7_2 MIT: do 53.0 24 0.00051 26.2 3.8 29 12-40 8-36 (75)
433 KOG3783 Uncharacterized conser 52.6 2.9E+02 0.0063 28.7 26.7 71 313-383 444-522 (546)
434 PF01535 PPR: PPR repeat; Int 52.0 22 0.00048 20.3 3.0 21 167-187 6-26 (31)
435 COG5536 BET4 Protein prenyltra 51.7 60 0.0013 30.7 7.0 125 298-426 90-231 (328)
436 KOG3807 Predicted membrane pro 51.5 2.4E+02 0.0053 27.5 13.5 27 357-383 280-306 (556)
437 cd02678 MIT_VPS4 MIT: domain c 51.4 30 0.00064 25.5 4.2 33 10-42 6-38 (75)
438 smart00671 SEL1 Sel1-like repe 50.7 30 0.00064 20.7 3.6 28 318-345 2-33 (36)
439 COG4259 Uncharacterized protei 50.4 1.1E+02 0.0024 24.1 7.2 37 194-232 71-107 (121)
440 smart00101 14_3_3 14-3-3 homol 50.3 2.1E+02 0.0047 26.5 18.7 174 166-345 6-199 (244)
441 PRK15490 Vi polysaccharide bio 48.4 46 0.00099 35.0 6.4 57 162-220 43-99 (578)
442 KOG0276 Vesicle coat complex C 47.5 1.5E+02 0.0033 31.3 9.7 72 298-380 623-694 (794)
443 PF04348 LppC: LppC putative l 47.4 6.3 0.00014 41.3 0.0 117 301-419 8-129 (536)
444 cd02684 MIT_2 MIT: domain cont 47.1 36 0.00078 25.2 4.1 31 11-41 7-37 (75)
445 cd02656 MIT MIT: domain contai 46.6 38 0.00083 24.8 4.2 31 12-42 8-38 (75)
446 KOG2997 F-box protein FBX9 [Ge 46.3 22 0.00047 34.1 3.3 21 74-94 30-50 (366)
447 KOG1463 26S proteasome regulat 45.1 3.1E+02 0.0067 26.9 13.9 171 199-383 132-318 (411)
448 cd02678 MIT_VPS4 MIT: domain c 45.1 47 0.001 24.4 4.5 29 392-420 10-38 (75)
449 COG5187 RPN7 26S proteasome re 44.1 3E+02 0.0065 26.4 12.3 117 299-415 92-219 (412)
450 KOG4151 Myosin assembly protei 43.2 34 0.00074 36.8 4.6 86 296-383 67-158 (748)
451 cd02684 MIT_2 MIT: domain cont 42.7 63 0.0014 23.9 4.8 28 393-420 11-38 (75)
452 KOG1497 COP9 signalosome, subu 42.4 3.3E+02 0.0072 26.5 10.8 96 318-416 104-212 (399)
453 COG4259 Uncharacterized protei 42.3 1.3E+02 0.0029 23.7 6.5 47 303-350 58-105 (121)
454 PF12739 TRAPPC-Trs85: ER-Golg 42.2 3.8E+02 0.0082 27.0 16.1 172 62-263 207-401 (414)
455 PRK09687 putative lyase; Provi 42.1 3.1E+02 0.0067 26.0 24.0 223 158-419 34-265 (280)
456 KOG2997 F-box protein FBX9 [Ge 42.0 36 0.00079 32.7 4.1 38 297-350 15-52 (366)
457 PF10952 DUF2753: Protein of u 41.2 2E+02 0.0044 23.7 8.1 76 12-91 3-78 (140)
458 smart00745 MIT Microtubule Int 41.1 87 0.0019 22.9 5.4 27 394-420 14-40 (77)
459 TIGR02710 CRISPR-associated pr 41.0 2.9E+02 0.0062 27.6 10.3 56 167-222 136-198 (380)
460 PHA02537 M terminase endonucle 40.9 1.2E+02 0.0025 28.0 7.2 21 72-92 92-112 (230)
461 KOG0276 Vesicle coat complex C 40.5 67 0.0014 33.7 6.0 81 318-417 615-695 (794)
462 cd02656 MIT MIT: domain contai 40.5 72 0.0016 23.3 4.9 28 393-420 11-38 (75)
463 PF09205 DUF1955: Domain of un 40.4 1.3E+02 0.0028 25.3 6.5 33 313-345 116-148 (161)
464 TIGR00985 3a0801s04tom mitocho 40.3 2.3E+02 0.005 24.1 9.0 28 322-349 95-123 (148)
465 PF02184 HAT: HAT (Half-A-TPR) 40.2 62 0.0013 19.7 3.5 26 332-359 2-27 (32)
466 KOG1463 26S proteasome regulat 38.9 3.9E+02 0.0084 26.3 22.0 286 14-349 8-319 (411)
467 PRK15490 Vi polysaccharide bio 38.6 2.2E+02 0.0048 30.1 9.6 77 296-376 22-98 (578)
468 cd02677 MIT_SNX15 MIT: domain 38.3 54 0.0012 24.3 3.8 32 11-42 7-38 (75)
469 PF12739 TRAPPC-Trs85: ER-Golg 37.8 4.4E+02 0.0095 26.6 16.7 109 297-419 277-401 (414)
470 COG5187 RPN7 26S proteasome re 37.7 3E+02 0.0066 26.4 9.3 30 352-381 115-144 (412)
471 cd02677 MIT_SNX15 MIT: domain 37.2 79 0.0017 23.4 4.5 27 394-420 12-38 (75)
472 PF07219 HemY_N: HemY protein 37.2 1.7E+02 0.0037 23.2 6.9 29 318-346 60-88 (108)
473 PF06957 COPI_C: Coatomer (COP 34.5 1.4E+02 0.0031 30.2 7.2 24 199-222 208-231 (422)
474 PF12753 Nro1: Nuclear pore co 34.5 1.5E+02 0.0033 29.5 7.2 66 248-320 334-400 (404)
475 PF13934 ELYS: Nuclear pore co 34.2 3.7E+02 0.008 24.6 9.8 82 322-412 83-164 (226)
476 KOG2709 Uncharacterized conser 33.9 1.8E+02 0.0039 29.2 7.5 40 10-49 22-61 (560)
477 KOG4279 Serine/threonine prote 32.6 54 0.0012 35.3 4.0 103 294-412 255-368 (1226)
478 KOG1114 Tripeptidyl peptidase 31.8 8E+02 0.017 27.8 14.2 69 333-402 1212-1281(1304)
479 KOG4563 Cell cycle-regulated h 31.5 80 0.0017 31.0 4.7 27 320-346 44-70 (400)
480 PF10952 DUF2753: Protein of u 31.0 2.6E+02 0.0056 23.1 6.8 64 320-383 4-85 (140)
481 KOG0686 COP9 signalosome, subu 31.0 3.6E+02 0.0078 27.1 9.0 94 318-412 151-253 (466)
482 TIGR02996 rpt_mate_G_obs repea 30.9 1.2E+02 0.0025 19.8 3.8 30 375-406 5-34 (42)
483 KOG4151 Myosin assembly protei 29.6 97 0.0021 33.5 5.3 111 300-421 45-160 (748)
484 PF09477 Type_III_YscG: Bacter 29.2 3.1E+02 0.0066 22.1 8.6 78 175-260 20-97 (116)
485 KOG2168 Cullins [Cell cycle co 28.4 8.2E+02 0.018 27.1 11.9 32 61-92 620-651 (835)
486 cd09240 BRO1_Alix Protein-inte 28.2 5.8E+02 0.013 25.0 11.6 15 161-175 119-133 (346)
487 KOG4459 Membrane-associated pr 27.5 6.8E+02 0.015 25.6 10.7 89 318-415 134-222 (471)
488 PF13934 ELYS: Nuclear pore co 27.1 2.2E+02 0.0047 26.1 6.7 87 318-413 42-133 (226)
489 PF12583 TPPII_N: Tripeptidyl 27.0 83 0.0018 26.1 3.4 45 193-239 74-118 (139)
490 KOG0292 Vesicle coat complex C 26.9 8E+02 0.017 27.5 11.3 25 166-190 996-1020(1202)
491 COG3014 Uncharacterized protei 26.7 6.3E+02 0.014 24.9 14.9 19 166-184 63-81 (449)
492 PF07219 HemY_N: HemY protein 26.6 2.5E+02 0.0055 22.2 6.3 46 356-403 63-108 (108)
493 PF06957 COPI_C: Coatomer (COP 26.3 3.9E+02 0.0085 27.1 8.7 35 5-40 200-234 (422)
494 PF02064 MAS20: MAS20 protein 25.9 1.8E+02 0.0039 23.8 5.2 29 321-349 67-95 (121)
495 KOG0739 AAA+-type ATPase [Post 25.9 3.3E+02 0.0072 26.3 7.5 14 248-261 7-20 (439)
496 COG5536 BET4 Protein prenyltra 25.6 6E+02 0.013 24.3 15.0 178 152-342 57-256 (328)
497 PF12753 Nro1: Nuclear pore co 25.4 1.1E+02 0.0024 30.5 4.5 32 297-331 333-364 (404)
498 PF14689 SPOB_a: Sensor_kinase 25.2 1.5E+02 0.0033 20.8 4.2 31 315-345 21-51 (62)
499 KOG0128 RNA-binding protein SA 24.7 9.8E+02 0.021 26.5 21.5 88 172-261 90-179 (881)
500 PF14852 Fis1_TPR_N: Fis1 N-te 24.5 1.2E+02 0.0026 18.8 3.0 14 318-331 2-15 (35)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-43 Score=339.83 Aligned_cols=374 Identities=17% Similarity=0.086 Sum_probs=327.7
Q ss_pred hhHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHH
Q 013299 3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET 82 (446)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA 82 (446)
+|+-.-.+|+|-+.|..+..-|++++|+..|+.+|+. .|. +.+|+..+|.++..+|+.+.|
T Consensus 109 ~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--------~p~-----------fida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 109 IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--------KPK-----------FIDAYINLAAALVTQGDLELA 169 (966)
T ss_pred hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--------Cch-----------hhHHHhhHHHHHHhcCCCccc
Confidence 4445556999999999999999999999999999987 454 345777788899999999999
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCC-----------CCCccc---cccCccccCCCcHHHHHHHHHHH
Q 013299 83 IMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGET-----------CPPNLR---SQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 83 ~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
...|..+|++ +|+.... ...++.++-..|... ..|.-. +.++..|..+|++..||.-+
T Consensus 170 ~~~~~~alql----nP~l~ca-~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y--- 241 (966)
T KOG4626|consen 170 VQCFFEALQL----NPDLYCA-RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHY--- 241 (966)
T ss_pred HHHHHHHHhc----Ccchhhh-hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHH---
Confidence 9999999999 5544321 233333322222111 123222 46788999999999999986
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+.+++.+|+.+++|.+||.+|...+.+++|+.+|.+|+...|+++.++-++|.+|+++|..+-|+..|+++| +++|
T Consensus 242 --~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral--~~~P 317 (966)
T KOG4626|consen 242 --EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL--ELQP 317 (966)
T ss_pred --HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH--hcCC
Confidence 566789999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
+++.++.+++.. +.+.|+..||+.+|++++...+.+ +.+.++||.+|..+ +..++|...|+++
T Consensus 318 ~F~~Ay~NlanA-Lkd~G~V~ea~~cYnkaL~l~p~h-----adam~NLgni~~E~-----------~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 318 NFPDAYNNLANA-LKDKGSVTEAVDCYNKALRLCPNH-----ADAMNNLGNIYREQ-----------GKIEEATRLYLKA 380 (966)
T ss_pred CchHHHhHHHHH-HHhccchHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHh-----------ccchHHHHHHHHH
Confidence 999999988754 677899999999999999976654 68999999999776 4689999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
+ +..|+.+.++.|||.+|.++|++++|+.+|+.|++++|.. +.++.++|.+|..+|+.++|++.|.+|+..+| ...
T Consensus 381 l-~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nP--t~A 456 (966)
T KOG4626|consen 381 L-EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQINP--TFA 456 (966)
T ss_pred H-hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc--HHH
Confidence 9 9999999999999999999999999999999999999999 69999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMR 438 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 438 (446)
+++.++|.++...|.+.+|+..|+++|.+. |+|..+|-++
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLklk----------PDfpdA~cNl 496 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKLK----------PDFPDAYCNL 496 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHccC----------CCCchhhhHH
Confidence 999999999999999999999999999996 6777777654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-40 Score=319.30 Aligned_cols=379 Identities=18% Similarity=0.122 Sum_probs=321.1
Q ss_pred HHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcC----------C-CCCCCC----ccccHHHHHHHHHHHhHHHHHHhC
Q 013299 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAE----------G-FPENLG----ADCKLQETLNRAVELLPELWKLAD 77 (446)
Q Consensus 13 ~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~----------~-~~~~~~----~~~~l~~~~~~a~~~l~~~~~~~g 77 (446)
....|--+++-|.|++|++-|..+-+.++...++ + ..+.++ ...+..+...+++-.+|+++...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 4556777889999999999999976543221100 0 000000 111333446788888999999999
Q ss_pred ChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCC-----------CCcc---ccccCccccCCCcHHHHHH
Q 013299 78 APRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETC-----------PPNL---RSQMGSSFVPRNNIEEAIL 143 (446)
Q Consensus 78 ~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~eA~~ 143 (446)
++++|+..|+.++++ +|++... ..+++..+...+.-.. .|.. .+..+.+...+|+++||..
T Consensus 131 ~~~~al~~y~~aiel----~p~fida-~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL----KPKFIDA-YINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hHHHHHHHHHHHHhc----CchhhHH-HhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999 7776543 4567777776543321 2221 1456677788899999988
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
.++ .+++..|..+-+|.+||-++..+|+...|++.|++|++++|+.+++|++||.+|-+.+.+++|+.+|.+|+
T Consensus 206 cYl-----kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl- 279 (966)
T KOG4626|consen 206 CYL-----KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL- 279 (966)
T ss_pred HHH-----HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH-
Confidence 863 34567799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHH
Q 013299 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (446)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~ 303 (446)
.+.|++..++-+++-++++ .|..+-||..|+|+|+. .|+ ...++.++|.++... |+..||+.
T Consensus 280 -~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~-~P~----F~~Ay~NlanALkd~-----------G~V~ea~~ 341 (966)
T KOG4626|consen 280 -NLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALEL-QPN----FPDAYNNLANALKDK-----------GSVTEAVD 341 (966)
T ss_pred -hcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhc-CCC----chHHHhHHHHHHHhc-----------cchHHHHH
Confidence 9999999999988888766 69999999999999995 444 368999999999765 56899999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+|.+|+ .+.|+++++++|||.++.++|.+++|...|.+|+...|+. +.++.+||.+|..+|++++|+..|+.|+++.|
T Consensus 342 cYnkaL-~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 342 CYNKAL-RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHH-HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 999999 9999999999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 384 KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 384 ~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
...+++.++|..+..+|+.+.|+.+|.+++.++|-..++
T Consensus 420 --~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 420 --TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred --hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 899999999999999999999999999999998765544
No 3
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-35 Score=296.38 Aligned_cols=418 Identities=42% Similarity=0.612 Sum_probs=369.7
Q ss_pred CchhHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChH
Q 013299 1 MSIHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPR 80 (446)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~ 80 (446)
|+-|+..+.+++-+.+++.+.+.|++.||.+.|+.+|++.+.....+.+........+.+++..+...++.+|...+...
T Consensus 165 ~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~ 244 (799)
T KOG4162|consen 165 MSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPK 244 (799)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCch
Confidence 45578888899999999999999999999999999999999988777666433233567788889998899999999999
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCC
Q 013299 81 ETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD 160 (446)
Q Consensus 81 eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~ 160 (446)
++|..|++++..+|+.+|...+.++..++.++..++.+.. ..-......+.+.++.++++..++..+++.-....-++
T Consensus 245 ~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd 322 (799)
T KOG4162|consen 245 EAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND 322 (799)
T ss_pred HHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch
Confidence 9999999999999999998877776666655433332211 00023346788899999999888777665555555699
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCC--CCChHHHHHHH
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED--PKCLPALLIAS 238 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--P~~~~a~~~~~ 238 (446)
+.+|.++..++...|+++.+.++|++++....+..+.|+.++.++...|..-.|+..+++.+ ... |+++..+++.+
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~--~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL--KKSEQPSDISVLLMAS 400 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc--ccccCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 666 99999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
.+|++..+..++++.|..+++.........+.+.++..+|++|..+.+.+..+++|...+.++++.+++|+ +.+|+|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av-~~d~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV-QFDPTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH-hcCCCCch
Confidence 99999999999999999999996555455677899999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+.|+++.-|..+++++.|+.+.+++++++|.+...+|..++.++..++|+.+|+..++-++...| +|......+..+.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhhhchhhhhhh
Confidence 99999999999999999999999999997766579999999999999999999999999999999 8999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
...|+.++|+..+.+.|.+|...+++.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q 584 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQ 584 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHh
Confidence 999999999999999999999766654
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-32 Score=291.82 Aligned_cols=257 Identities=14% Similarity=0.043 Sum_probs=227.7
Q ss_pred CcHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChH
Q 013299 136 NNIEEAILLLMILLRKVALKR---IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL 212 (446)
Q Consensus 136 ~~~~eA~~~l~~~~~~~~l~~---~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 212 (446)
+.+++|+..+ +.++.. .|....++..+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|+++
T Consensus 308 ~~y~~A~~~~-----~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 308 ESYEEAARAF-----EKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhHHHHHHHH-----HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 4677888775 334443 47888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchH
Q 013299 213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 213 eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
+|+..|++++ ..+|+++.+++.+|.+++ ..|++++|+.+|+++++..|.+ ..+++.+|.++...
T Consensus 383 eA~~~~~~al--~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~-----~~~~~~la~~~~~~-------- 446 (615)
T TIGR00990 383 KAEEDFDKAL--KLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDF-----IFSHIQLGVTQYKE-------- 446 (615)
T ss_pred HHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccC-----HHHHHHHHHHHHHC--------
Confidence 9999999999 899999999998887755 4799999999999999965443 56788999998664
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH------HHHHHHHHH-Hc
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG------WLLMARILS-AQ 365 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~------~~~la~~~~-~~ 365 (446)
|++++|+..|++++ ..+|+++.+++++|.++..+|++++|+..|++|+.++|++. .. +.+.+.++. ..
T Consensus 447 ---g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 447 ---GSIASSMATFRRCK-KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWK 521 (615)
T ss_pred ---CCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHh
Confidence 57899999999999 99999999999999999999999999999999999999753 33 233344444 47
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
|++++|+..++++++++| ++..++..+|.++..+|++++|+..|++++++.+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p--~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDP--ECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred hhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999 88889999999999999999999999999999864
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2e-31 Score=282.09 Aligned_cols=347 Identities=12% Similarity=-0.018 Sum_probs=272.3
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
.+..+..+|.++++.|+|++|+..|.++|+. .|+. ..+..+|.+|...|++++|+..|.+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--------~p~~------------~~~~n~a~~~~~l~~~~~Ai~~~~~ 185 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC--------KPDP------------VYYSNRAACHNALGDWEKVVEDTTA 185 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCch------------HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4678889999999999999999999999986 3431 2456778999999999999999999
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH--------------------
Q 013299 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL-------------------- 148 (446)
Q Consensus 89 al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~-------------------- 148 (446)
+|+. +|++...+ ..++..+. ..|++++|+..+...
T Consensus 186 al~l----~p~~~~a~-~~~a~a~~--------------------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (615)
T TIGR00990 186 ALEL----DPDYSKAL-NRRANAYD--------------------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK 240 (615)
T ss_pred HHHc----CCCCHHHH-HHHHHHHH--------------------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 9999 66554322 33343322 334455554322100
Q ss_pred -----HHHHHhhcCCCCHH---------------------------------HHHHHHHHHH---hcCCHHHHHHHHHhh
Q 013299 149 -----LRKVALKRIEWDPS---------------------------------ILDHLSFAFS---IAGDLSSLATQIEEL 187 (446)
Q Consensus 149 -----~~~~~l~~~p~~~~---------------------------------~~~~lg~~l~---~~~~~~~A~~~~~~a 187 (446)
....++...|.+.. .+..+|.... ..+++++|+++|+++
T Consensus 241 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a 320 (615)
T TIGR00990 241 KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA 320 (615)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 00112223333322 2223332221 236899999999999
Q ss_pred CCC---CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Q 013299 188 LPG---IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGD 264 (446)
Q Consensus 188 l~~---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~ 264 (446)
+.. .|+...+|+.+|.++..+|++++|+..|++++ .++|+++.+++.++.++. ..|++++|+..++++++..|.
T Consensus 321 l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal--~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~ 397 (615)
T TIGR00990 321 LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI--ELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSE 397 (615)
T ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC
Confidence 976 58888999999999999999999999999999 899999999998887755 478999999999999996444
Q ss_pred CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013299 265 GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL 344 (446)
Q Consensus 265 ~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 344 (446)
+ +.+++.+|.++... |++++|+.+|++++ +++|++..+++++|.++..+|++++|+..|++++
T Consensus 398 ~-----~~~~~~lg~~~~~~-----------g~~~~A~~~~~kal-~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 398 D-----PDIYYHRAQLHFIK-----------GEFAQAGKDYQKSI-DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred C-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 57899999998764 57899999999999 9999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHh
Q 013299 345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQ-LVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 345 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~~~~a~~~-~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+|+++ .++..+|.++..+|++++|+..|++++.+.|+.+ +...+...+.++ ...|++++|+..|++++++.|
T Consensus 461 ~~~P~~~-~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 461 KNFPEAP-DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred HhCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 9999995 9999999999999999999999999999998311 112233444444 447999999999999999865
Q ss_pred hh
Q 013299 420 VQ 421 (446)
Q Consensus 420 ~~ 421 (446)
+.
T Consensus 540 ~~ 541 (615)
T TIGR00990 540 EC 541 (615)
T ss_pred Cc
Confidence 43
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.8e-31 Score=281.14 Aligned_cols=336 Identities=12% Similarity=-0.017 Sum_probs=287.2
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
.-++.+...|++++|...++.++.. .|.+ ..++..+|.+....|++++|+..|+++++.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~-----------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~-- 105 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLT--------AKNG-----------RDLLRRWVISPLASSQPDAVLQVVNKLLAV-- 105 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHh--------CCCc-----------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--
Confidence 3456778899999999999999987 4543 357888899999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 013299 95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA 174 (446)
Q Consensus 95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~ 174 (446)
+|++... ...++.. +...|++++|+..+ +.++..+|+++.++..+|.++...
T Consensus 106 --~P~~~~a-~~~la~~--------------------l~~~g~~~~Ai~~l-----~~Al~l~P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 106 --NVCQPED-VLLVASV--------------------LLKSKQYATVADLA-----EQAWLAFSGNSQIFALHLRTLVLM 157 (656)
T ss_pred --CCCChHH-HHHHHHH--------------------HHHcCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHC
Confidence 5655332 2333433 34568899999886 566788999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
|++++|++.+++++..+|+++.++..++ .+...|++++|+..+++++ ..+|............++...|++++|+..
T Consensus 158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l--~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 158 DKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALL--PFFALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHH--hcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999998875 4889999999999999999 777643332222223344567999999999
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 013299 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA----KALQALVSAARSTNMRDLSILYRLSLEYAEQ 330 (446)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~----eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~ 330 (446)
++++++..|.+ ..+++.+|.++...| +++ +|+..|++++ +++|+++.++.++|.++..+
T Consensus 235 ~~~al~~~p~~-----~~~~~~Lg~~l~~~G-----------~~~eA~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 235 GESALARGLDG-----AALRRSLGLAYYQSG-----------RSREAKLQAAEHWRHAL-QFNSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHhcCCCC-----HHHHHHHHHHHHHcC-----------CchhhHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHC
Confidence 99999954433 678899999997765 445 4899999999 99999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 331 ~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
|++++|+..+++++.++|+++ .++.++|.++..+|++++|+..|++++..+| ++...+..+|.++...|++++|++.
T Consensus 298 g~~~eA~~~l~~al~l~P~~~-~a~~~La~~l~~~G~~~eA~~~l~~al~~~P--~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLP-YVRAMYARALRQVGQYTAASDEFVQLAREKG--VTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999994 9999999999999999999999999999999 7877777789999999999999999
Q ss_pred HHHHHHHHhhhh
Q 013299 411 YTHLLAALQVQT 422 (446)
Q Consensus 411 ~~~~l~l~~~~~ 422 (446)
|++++++.|++.
T Consensus 375 l~~al~~~P~~~ 386 (656)
T PRK15174 375 FEHYIQARASHL 386 (656)
T ss_pred HHHHHHhChhhc
Confidence 999999998864
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.2e-30 Score=289.81 Aligned_cols=353 Identities=16% Similarity=0.083 Sum_probs=232.8
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
.+|.++...|++++|+..|+++|+. .|.+ ..++..+|.+|.++|++++|+..|+++++.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~-----------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-- 332 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKD-----------SEALGALGQAYSQQGDRARAVAQFEKALAL-- 332 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4599999999999999999999987 4543 357788999999999999999999999998
Q ss_pred CCChHHHH--HHHHHHH--HHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 95 NLDAETTA--KLQKEFA--IFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 95 ~~~~~~~~--~l~~~~a--~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
+|++.. .....+. ..... ...+..+...|++++|+..+ +.++..+|+++.++..+|.+
T Consensus 333 --~p~~~~~~~~~~ll~~~~~~~~-----------~~~g~~~~~~g~~~eA~~~~-----~~Al~~~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 333 --DPHSSNRDKWESLLKVNRYWLL-----------IQQGDAALKANNLAQAERLY-----QQARQVDNTDSYAVLGLGDV 394 (1157)
T ss_pred --CCCccchhHHHHHHHhhhHHHH-----------HHHHHHHHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHH
Confidence 332211 0000000 00000 01122345678899999886 56678889999999999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHH------------------------------------------HHHC
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALC------------------------------------------YYGA 208 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~------------------------------------------~~~~ 208 (446)
+...|++++|++.|+++++++|++..++..++.+ +...
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 9999999999999999999999998887766554 3457
Q ss_pred CChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 209 g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
|++++|+..|++++ +++|+++.+++.++.++. ..|++++|+..++++++..|.+. .+++.+|..+...++..
T Consensus 475 g~~~eA~~~~~~Al--~~~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~~~P~~~-----~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 475 GKWAQAAELQRQRL--ALDPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQQKPNDP-----EQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred CCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHhCCCHH
Confidence 99999999999999 899999998888877654 47899999999999998555442 33444443322211100
Q ss_pred h---------------------------------------------------------------chHHHHHHHHHHHHHH
Q 013299 289 I---------------------------------------------------------------TDFDRATRQAKALQAL 305 (446)
Q Consensus 289 ~---------------------------------------------------------------~~~~~~~~~~eAl~~~ 305 (446)
. ..+.+.|++++|+..|
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 0012334555555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW 385 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 385 (446)
++++ +++|+++.+++++|.++...|++++|+..+++++..+|+++ .++..+|.++..+|++++|+..+++++...|+.
T Consensus 627 ~~al-~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 627 QRVL-TREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL-NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 5555 55555555555555555555555555555555555555552 555555555555555555555555555544310
Q ss_pred -C---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 386 -E---QGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 386 -~---~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
. +..++..+|.++...|++++|++.|++++.
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0 112334445555555555555555555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-29 Score=278.81 Aligned_cols=368 Identities=17% Similarity=0.118 Sum_probs=259.6
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
..++..|.++...|++++|+..|.++++. .|.+ ..++..++.++...|++++|+..|++++
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSI--------EPDF-----------FPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46777888888888888888888888765 2332 1345556677777777777777777777
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCC------------CCCCccc--cccCccccCCCcHHHHHHHHHHHHHHHHhhc
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGE------------TCPPNLR--SQMGSSFVPRNNIEEAILLLMILLRKVALKR 156 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~------------~~~~~~~--~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~ 156 (446)
+. .|.+... ...++..+...+.. ..|.... ..++..+...|++++|+..+ +.++..
T Consensus 527 ~~----~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-----~~~~~~ 596 (899)
T TIGR02917 527 TI----DPKNLRA-ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL-----NEAADA 596 (899)
T ss_pred Hh----CcCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH-----HHHHHc
Confidence 76 3332211 12222222211110 0111111 22334555667777777664 344556
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
.|.++.+|..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|++++ ..+|++..++..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL--ELKPDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHH
Confidence 677777777777777777777777777777777777777777777777777777777777777777 677776666665
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc----------------------hHHH
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT----------------------DFDR 294 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~----------------------~~~~ 294 (446)
++.++. ..|++++|+..++++.+..+++ ..++..+|.++...++.... ...+
T Consensus 675 l~~~~~-~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 675 LAQLLL-AAKRTESAKKIAKSLQKQHPKA-----ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHhhCcCC-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 554433 3456666666666665543322 23444455554444332110 0123
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.|++++|+..+++++ +.+|+++.+++.+|.++..+|++++|+..|++++..+|++ ..++.++|+++...|+ .+|+.+
T Consensus 749 ~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc-HHHHHH
Confidence 567899999999999 9999999999999999999999999999999999999998 4999999999999999 889999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++++++..| +++..+..+|.++...|++++|++.|++++++.|.
T Consensus 826 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 826 AEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999 88899999999999999999999999999998764
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.6e-29 Score=273.70 Aligned_cols=368 Identities=16% Similarity=0.051 Sum_probs=240.6
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
..++..|..+...|++++|+..++++++. .|.+ ..+...+|.++...|++++|+..|++++
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPND-----------AEARFLLGKIYLALGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56889999999999999999999999986 4553 2577889999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCC------------CCCccc---cccCccccCCCcHHHHHHHHHHHHHHHHhh
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGET------------CPPNLR---SQMGSSFVPRNNIEEAILLLMILLRKVALK 155 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~------------~~~~~~---~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~ 155 (446)
+. .|.... ....++..+...+... .++... ...+..+...|++++|+..+ +.++.
T Consensus 84 ~~----~~~~~~-~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-----~~a~~ 153 (899)
T TIGR02917 84 SL----GYPKNQ-VLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSY-----EQALA 153 (899)
T ss_pred Hc----CCChhh-hHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHH-----HHHHh
Confidence 98 332211 1223333333222110 011111 23455677788899998876 55667
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
..|+++.++..+|.++...|++++|+..++++++.+|.++.+|+.+|.++...|++++|+..|++++ ..+|+++.++.
T Consensus 154 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~--~~~p~~~~~~~ 231 (899)
T TIGR02917 154 IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAI--ALRPNNPAVLL 231 (899)
T ss_pred cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhCCCCHHHHH
Confidence 7888888999999999999999999999999999999999999999999999999999999999999 88998888887
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc-----------------------hH
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT-----------------------DF 292 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~-----------------------~~ 292 (446)
..+.++.. .|++++|...++++++..|.+ ..+++..|.++...++.... ..
T Consensus 232 ~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 305 (899)
T TIGR02917 232 ALATILIE-AGEFEEAEKHADALLKKAPNS-----PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASE 305 (899)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 77766544 688888888888888865443 34555556655443321000 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
...|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..+++++..+|.+ ...+..+|.++...|++++|+
T Consensus 306 ~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQIL-KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD-PAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 12234444555555555 4455554444455555555555555555555555555544 245555555555555555555
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.+++++++.+| ++..+++.+|.++...|++++|++.+++++++.|
T Consensus 384 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 384 EYLAKATELDP--ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 55555555555 4455555555555555555555555555555443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.3e-29 Score=281.67 Aligned_cols=326 Identities=15% Similarity=0.024 Sum_probs=244.3
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHH----HHHHHhHHHHHHhCChHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLN----RAVELLPELWKLADAPRETIMS 85 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~a~~~l~~~~~~~g~~~eA~~~ 85 (446)
.++++.+|.++..+|++++|+..|+++++.. |...... .....+. ......|.++...|++++|+..
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--------p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALD--------PHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5789999999999999999999999999873 3221100 0001111 1223457788999999999999
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHH-
Q 013299 86 YRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSIL- 164 (446)
Q Consensus 86 y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~- 164 (446)
|+++++. +|.+.. ....++.++. .+|++++|+..+ +.+++.+|+++.++
T Consensus 374 ~~~Al~~----~P~~~~-a~~~Lg~~~~--------------------~~g~~~eA~~~y-----~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 374 YQQARQV----DNTDSY-AVLGLGDVAM--------------------ARKDYAAAERYY-----QQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHHHh----CCCCHH-HHHHHHHHHH--------------------HCCCHHHHHHHH-----HHHHHhCCCCHHHHH
Confidence 9999998 554332 1233444332 344555555543 33344445444443
Q ss_pred -----------------------------------------HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHH
Q 013299 165 -----------------------------------------DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILAL 203 (446)
Q Consensus 165 -----------------------------------------~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 203 (446)
..+|.++...|++++|++.|+++++++|+++.+++.+|.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345566667899999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----------------------
Q 013299 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE----------------------- 260 (446)
Q Consensus 204 ~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~----------------------- 260 (446)
+|...|++++|+..|++++ ..+|+++.+++..+ +++...++.++|+.+++++..
T Consensus 504 ~~~~~G~~~~A~~~l~~al--~~~P~~~~~~~a~a-l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLA--QQKPNDPEQVYAYG-LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHH--HcCCCCHHHHHHHH-HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999 89999999887665 445567788888877765321
Q ss_pred -----------------HcCCCcchhhhHHHHHhhchhHhhhhhhhc-----------------------hHHHHHHHHH
Q 013299 261 -----------------CLGDGCDQMESTANCLLGISLSAQSKVAIT-----------------------DFDRATRQAK 300 (446)
Q Consensus 261 -----------------~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~-----------------------~~~~~~~~~e 300 (446)
..|++ ..+++.+|.++...++.... -+...|++++
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~-----~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPS-----TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 11111 34567778777776654321 0135688999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHH
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL-----KGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~-----~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|++.|++++ +.+|+++.++..+|.++..+|++++|+..|++++...|+++. ..+..+|.++..+|++++|+..|
T Consensus 656 A~~~l~~ll-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 656 ARAQLAKLP-ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHh-ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999 999999999999999999999999999999999999876531 35667899999999999999999
Q ss_pred HHHHhhcC
Q 013299 376 NAALDQTG 383 (446)
Q Consensus 376 ~~al~~~p 383 (446)
++|+....
T Consensus 735 ~~Al~~~~ 742 (1157)
T PRK11447 735 KDAMVASG 742 (1157)
T ss_pred HHHHhhcC
Confidence 99987554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=2.5e-29 Score=266.20 Aligned_cols=300 Identities=14% Similarity=0.078 Sum_probs=260.5
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
....+++.|++++|+..++.++.. .|++... ...++.. ....|++++|+..+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~-l~~l~~~--------------------~l~~g~~~~A~~~l--- 99 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLT----AKNGRDL-LRRWVIS--------------------PLASSQPDAVLQVV--- 99 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHh----CCCchhH-HHHHhhh--------------------HhhcCCHHHHHHHH---
Confidence 345678999999999999999998 4443332 2333322 23478899999886
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+.++..+|++++++..+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|+..+++++ ..+|
T Consensus 100 --~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~--~~~P 175 (656)
T PRK15174 100 --NKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA--QEVP 175 (656)
T ss_pred --HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH--HhCC
Confidence 667888999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
+++.++...+ . +...|++++|+..++++++..+.+. ......+|.++.. .|++++|+..|+++
T Consensus 176 ~~~~a~~~~~-~-l~~~g~~~eA~~~~~~~l~~~~~~~----~~~~~~l~~~l~~-----------~g~~~eA~~~~~~a 238 (656)
T PRK15174 176 PRGDMIATCL-S-FLNKSRLPEDHDLARALLPFFALER----QESAGLAVDTLCA-----------VGKYQEAIQTGESA 238 (656)
T ss_pred CCHHHHHHHH-H-HHHcCCHHHHHHHHHHHHhcCCCcc----hhHHHHHHHHHHH-----------CCCHHHHHHHHHHH
Confidence 9998876543 3 4557999999999999998544332 1233455666644 46789999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 309 ARSTNMRDLSILYRLSLEYAEQRKLNA----AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~~~~~~----A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
+ +++|+++.+++++|.++..+|++++ |+..|+++++++|++ ..++..+|.++..+|++++|+.++++++..+|
T Consensus 239 l-~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P- 315 (656)
T PRK15174 239 L-ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-VRIVTLYADALIRTGQNEKAIPLLQQSLATHP- 315 (656)
T ss_pred H-hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-
Confidence 9 9999999999999999999999996 899999999999999 59999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++.++.++|.++...|++++|+..|+++++..|.+
T Consensus 316 -~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 316 -DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 899999999999999999999999999999987653
No 12
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=3.2e-26 Score=247.23 Aligned_cols=345 Identities=13% Similarity=-0.006 Sum_probs=243.1
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+.++...|.++..+|++++|++.|+++|+. .|.+ ..+...++.++...|++++|+..++++
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQN-----------DDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445677777777777777777777777765 3432 123445566777777777777777777
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
++. +|++.. ...++.+ +...|++++|+..+ +.+++..|++++++..+|.
T Consensus 110 l~~----~P~~~~--~~~la~~--------------------l~~~g~~~~Al~~l-----~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 110 VSG----APDKAN--LLALAYV--------------------YKRAGRHWDELRAM-----TQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHh----CCCCHH--HHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHH
Confidence 777 444433 2233322 23456777777765 5566777888877777777
Q ss_pred HHHhcCCHHH----------------------------------------------HHHHHHhhCCCCCCcHHH------
Q 013299 170 AFSIAGDLSS----------------------------------------------LATQIEELLPGIINRKER------ 197 (446)
Q Consensus 170 ~l~~~~~~~~----------------------------------------------A~~~~~~al~~~p~~~~~------ 197 (446)
++...++.++ |++.|+++++..|.+|+.
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 7766555544 344444444332323222
Q ss_pred -HHH-HHHHHHHCCChHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 198 -YHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 198 -~~~-lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~-a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
+.. +| .+...|++++|+..|++++ +..|..|. +...++.+ +...|++++|+.+|+++++. +|..........
T Consensus 239 a~~d~l~-~Ll~~g~~~eA~~~~~~ll--~~~~~~P~~a~~~la~~-yl~~g~~e~A~~~l~~~l~~-~p~~~~~~~~~~ 313 (765)
T PRK10049 239 ARIDRLG-ALLARDRYKDVISEYQRLK--AEGQIIPPWAQRWVASA-YLKLHQPEKAQSILTELFYH-PETIADLSDEEL 313 (765)
T ss_pred HHHHHHH-HHHHhhhHHHHHHHHHHhh--ccCCCCCHHHHHHHHHH-HHhcCCcHHHHHHHHHHhhc-CCCCCCCChHHH
Confidence 111 33 3456688888888888888 55433221 22223444 33467888888888887773 332110111233
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR---------------DLSILYRLSLEYAEQRKLNAAHYY 339 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~---------------~~~a~~~lg~~~~~~~~~~~A~~~ 339 (446)
..++.++. ..+++++|+..++++. ..+|. ...+++.+|.++...|++++|+..
T Consensus 314 ~~L~~a~~-----------~~g~~~eA~~~l~~~~-~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 314 ADLFYSLL-----------ESENYPGALTVTAHTI-NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred HHHHHHHH-----------hcccHHHHHHHHHHHh-hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444443 3468999999999999 88873 246788999999999999999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 340 AKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 340 ~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+++++...|++ ..++..+|.++...|++++|+..+++++.++| ++..+++.+|.++...|++++|...++++++..|
T Consensus 382 l~~al~~~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P--d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 382 ARELAYNAPGN-QGLRIDYASVLQARGWPRAAENELKKAEVLEP--RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999 59999999999999999999999999999999 9999999999999999999999999999999998
Q ss_pred hhhhh
Q 013299 420 VQTKT 424 (446)
Q Consensus 420 ~~~~~ 424 (446)
++..+
T Consensus 459 d~~~~ 463 (765)
T PRK10049 459 QDPGV 463 (765)
T ss_pred CCHHH
Confidence 76654
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=8e-26 Score=245.34 Aligned_cols=339 Identities=12% Similarity=-0.015 Sum_probs=248.7
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCc------cccCCCc
Q 013299 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGS------SFVPRNN 137 (446)
Q Consensus 64 ~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~------~~~~~~~ 137 (446)
.++..++-...++|+.++|...|+.+...+. +..-+..+..+++..+........+... ..++. .-.-.++
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPYLATPAKV-AILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCcccchHHH-HHhccccccchhHHHHhh
Confidence 4667777788999999999999999998521 1111122444555544433221111100 00000 0000122
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHH
Q 013299 138 IEEAILLLMILLRKVALKRIEW--DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL 215 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~--~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 215 (446)
+.++...+. ....++...|. ++.+|+++|.++.. +++++|+.+|.+++...|++. .+..+|.++...|++++|+
T Consensus 454 ~~~~~~~~~--~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 454 LPGIADNCP--AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhHH--HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHH
Confidence 222211110 11344566677 99999999999987 899999999999999999764 4666777778999999999
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHH
Q 013299 216 NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295 (446)
Q Consensus 216 ~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 295 (446)
..|++++ ...|.+. .++.++.++. ..|++++|+.+++++++..|+. ...+..++.... +.
T Consensus 530 ~~~rka~--~~~p~~~-a~~~la~all-~~Gd~~eA~~~l~qAL~l~P~~-----~~l~~~La~~l~-----------~~ 589 (987)
T PRK09782 530 AAWQKIS--LHDMSNE-DLLAAANTAQ-AAGNGAARDRWLQQAEQRGLGD-----NALYWWLHAQRY-----------IP 589 (987)
T ss_pred HHHHHHh--ccCCCcH-HHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHH-----------hC
Confidence 9999998 6666654 4555555544 4789999999999999854332 223333333221 23
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|++++|+..|++++ +++|+ +.+++++|.++.+.|++++|+..|++++.++|++ ..++.++|.++..+|++++|+..+
T Consensus 590 Gr~~eAl~~~~~AL-~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSL-NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-SNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHH-HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 67999999999999 99996 9999999999999999999999999999999999 499999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKV 434 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~ 434 (446)
+++++.+| +++.+++++|.++..+|++++|+..|++++++.|+........+.....
T Consensus 667 ~~AL~l~P--~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 667 ERAHKGLP--DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 99999999 8999999999999999999999999999999987655544444433333
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.8e-26 Score=231.50 Aligned_cols=394 Identities=16% Similarity=0.124 Sum_probs=298.9
Q ss_pred HHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 013299 8 LLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYR 87 (446)
Q Consensus 8 ~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~ 87 (446)
+.++.+|++|.++..+|+||+|...|.++++. +++++. -.+.-+|..|+..|++++|+..|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--------~~d~~~----------l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--------DNDNFV----------LPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--------CCCCcc----------ccccchhHHHHHhchHHHHHHHHH
Confidence 56899999999999999999999999999986 344321 134456789999999999999999
Q ss_pred HHhCCCCCCChHHHHHH---------------HHHHHHHHhhhcCCCCCCcccc--ccCccccCCCcHHHHHHHHHHHHH
Q 013299 88 RALLPCWNLDAETTAKL---------------QKEFAIFLLYCGGETCPPNLRS--QMGSSFVPRNNIEEAILLLMILLR 150 (446)
Q Consensus 88 ~al~~~~~~~~~~~~~l---------------~~~~a~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~eA~~~l~~~~~ 150 (446)
++++. .|.+...+ ....+.-++....+..|.+... .++.++ .+++.-.++..+..+..
T Consensus 367 kv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~-e~~d~~~sL~~~~~A~d 441 (1018)
T KOG2002|consen 367 KVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL-EQTDPWASLDAYGNALD 441 (1018)
T ss_pred HHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-HhcChHHHHHHHHHHHH
Confidence 99998 44332221 1122222332222222322211 112222 23334344444433221
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC-----CCCc-----HHHHHHHHHHHHHCCChHHHHHHHHH
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-----IINR-----KERYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~-----~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
.-.-...+--+++.+++|..+...|++++|...|.+|+.. +++. ...-|++|.++-..++++.|...|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 1111223456889999999999999999999999999877 2222 23589999999999999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc----------
Q 013299 221 LLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT---------- 290 (446)
Q Consensus 221 al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~---------- 290 (446)
.+ +..|..+.+++.+|.+. +..+...+|..+++.++.....+ +.++..+|.++.....+.+.
T Consensus 522 Il--kehp~YId~ylRl~~ma-~~k~~~~ea~~~lk~~l~~d~~n-----p~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 522 IL--KEHPGYIDAYLRLGCMA-RDKNNLYEASLLLKDALNIDSSN-----PNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HH--HHCchhHHHHHHhhHHH-HhccCcHHHHHHHHHHHhcccCC-----cHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 99 89999999998877443 44678889999999999965444 46777788666554433110
Q ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013299 291 ---------------------------DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML 343 (446)
Q Consensus 291 ---------------------------~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 343 (446)
.....+++++|++.|.+++ ..+|.|.-+-+.+|.+++..|++.+|+..|.+.
T Consensus 594 ~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL-~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL-RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH-hcCcchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 0124578899999999999 999999999999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 344 LKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 344 l~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.+--.+++ .+|.|+|.|+..+|+|-.|++.|+.+++..-+.++++++..+|.++.+.|++.+|.++...++.+.
T Consensus 673 rEa~~~~~-dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~----- 746 (1018)
T KOG2002|consen 673 REATSDFE-DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA----- 746 (1018)
T ss_pred HHHHhhCC-ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----
Confidence 88777775 999999999999999999999999999765322689999999999999999999999999999997
Q ss_pred hccCCcchhhHHhhhhccccC
Q 013299 424 TFSSDKRFYKVYFMRKRVSTK 444 (446)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~ 444 (446)
|..+.|.||..-|..+
T Consensus 747 -----p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 747 -----PSNTSVKFNLALVLKK 762 (1018)
T ss_pred -----CccchHHhHHHHHHHH
Confidence 6667799998887653
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=5.3e-25 Score=237.72 Aligned_cols=338 Identities=11% Similarity=-0.035 Sum_probs=261.2
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
....+..-.|++++|++.|.+++.. .|.. ..++..+|.++...|++++|+..|+++++.
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~-----------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-- 78 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVH--------MQLP-----------ARGYAAVAVAYRNLKQWQNSLTLWQKALSL-- 78 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4456677899999999999998763 2221 346778889999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 013299 95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA 174 (446)
Q Consensus 95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~ 174 (446)
+|.+... ...++.+ +...|++++|+..+ +.+++..|+++. +..+|.++...
T Consensus 79 --~P~~~~a-~~~la~~--------------------l~~~g~~~eA~~~l-----~~~l~~~P~~~~-~~~la~~l~~~ 129 (765)
T PRK10049 79 --EPQNDDY-QRGLILT--------------------LADAGQYDEALVKA-----KQLVSGAPDKAN-LLALAYVYKRA 129 (765)
T ss_pred --CCCCHHH-HHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHH-HHHHHHHHHHC
Confidence 5554332 2334433 33467899999876 566788999999 99999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC------------------------------
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG------------------------------ 224 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------------------------------ 224 (446)
|++++|+..|+++++++|+++++++.+|.++...|+.++|+..++++.+.
T Consensus 130 g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 130 GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 99999999999999999999999999999998888877666555543300
Q ss_pred --------------CCCCCChHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHh
Q 013299 225 --------------SEDPKCLPA-------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSA 283 (446)
Q Consensus 225 --------------~~~P~~~~a-------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 283 (446)
...|.++.. .+...+.++ ..+++++|+..|+++++..++.+ ..+...+|.+|..
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P----~~a~~~la~~yl~ 284 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL-ARDRYKDVISEYQRLKAEGQIIP----PWAQRWVASAYLK 284 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHh
Confidence 222222211 111012223 34667777777777766322111 1233334555544
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---------
Q 013299 284 QSKVAITDFDRATRQAKALQALVSAARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--------- 350 (446)
Q Consensus 284 ~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--------- 350 (446)
.+++++|+..|++++ +.+|.+ ......++.++.++|++++|+..++++...+|..
T Consensus 285 -----------~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 285 -----------LHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred -----------cCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 467899999999999 999887 4577888889999999999999999999988731
Q ss_pred ----C-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 351 ----N-LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 351 ----~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
. ..++..+|.++...|++++|+..+++++...| ++..+++.+|.++...|++++|++.+++++++.|++
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 1 25778899999999999999999999999999 899999999999999999999999999999998765
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.8e-25 Score=242.68 Aligned_cols=256 Identities=9% Similarity=-0.059 Sum_probs=223.7
Q ss_pred CcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHH
Q 013299 136 NNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL 215 (446)
Q Consensus 136 ~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 215 (446)
++.++|+..+ ...+...|++. .+..+|.++...|++++|+..|++++...|. ...++.+|.++...|++++|+
T Consensus 490 ~~~~eAi~a~-----~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~ 562 (987)
T PRK09782 490 TLPGVALYAW-----LQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARD 562 (987)
T ss_pred CCcHHHHHHH-----HHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHH
Confidence 5778898865 33456668654 3555677778999999999999999887665 456899999999999999999
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHH
Q 013299 216 NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295 (446)
Q Consensus 216 ~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 295 (446)
..|++++ ..+|++......++.. ....|++++|+.+++++++..| + ..++..+|.++...
T Consensus 563 ~~l~qAL--~l~P~~~~l~~~La~~-l~~~Gr~~eAl~~~~~AL~l~P-~-----~~a~~~LA~~l~~l----------- 622 (987)
T PRK09782 563 RWLQQAE--QRGLGDNALYWWLHAQ-RYIPGQPELALNDLTRSLNIAP-S-----ANAYVARATIYRQR----------- 622 (987)
T ss_pred HHHHHHH--hcCCccHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHHHHHC-----------
Confidence 9999999 8999988766544332 3346999999999999999654 3 46889999988664
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|++++|+..|++++ +++|+++.+++++|.++...|++++|+..|+++++++|+++ .+++++|.++..+|++++|+.++
T Consensus 623 G~~deA~~~l~~AL-~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~-~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAAL-ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP-ALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHH
Confidence 67899999999999 99999999999999999999999999999999999999994 99999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
++++++.| ++..+.+..|.++....+++.|.+.|++...+.|...
T Consensus 701 ~~Al~l~P--~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 701 RLVIDDID--NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHhcCC--CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999 8999999999999999999999999999999987643
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.8e-26 Score=227.74 Aligned_cols=310 Identities=15% Similarity=0.057 Sum_probs=218.5
Q ss_pred HHHHHHHHHHhhhhccc--ChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 013299 8 LLLEAIFLKAKCLQGLG--RFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMS 85 (446)
Q Consensus 8 ~~~~~~~~~g~~~~~~g--~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~ 85 (446)
.+++.+...|.-+..+- +.++|+..|.+ + |...+.. .-++-.+|..|+..++|++|..+
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt-----------~wvl~q~GrayFEl~~Y~~a~~~ 375 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNT-----------GWVLSQLGRAYFELIEYDQAERI 375 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCc-----------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554443 44566666555 2 3333331 24778899999999999999999
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 013299 86 YRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILD 165 (446)
Q Consensus 86 y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~ 165 (446)
|+.+-+. +|-.... ..-+...|.-. ++ +-++..| .+..+..+|+.|+.|.
T Consensus 376 F~~~r~~----~p~rv~~-meiyST~LWHL-------------------q~--~v~Ls~L----aq~Li~~~~~sPesWc 425 (638)
T KOG1126|consen 376 FSLVRRI----EPYRVKG-MEIYSTTLWHL-------------------QD--EVALSYL----AQDLIDTDPNSPESWC 425 (638)
T ss_pred HHHHHhh----ccccccc-hhHHHHHHHHH-------------------Hh--hHHHHHH----HHHHHhhCCCCcHHHH
Confidence 9999888 5422110 00000000000 00 0111111 2334556666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCC
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYP 245 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~ 245 (446)
-+|+++..+++++.|+.+|++|+++||+.+-+|.-+|--+.....+|.|...|+.|| ..+|.+..
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--~~~~rhYn------------- 490 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--GVDPRHYN------------- 490 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh--cCCchhhH-------------
Confidence 666666666666666666666666666666666666666666666666666666666 66665544
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
||+-+|++|.++ ++++.|.-.|++|+ +++|.|......+|.
T Consensus 491 ---------------------------AwYGlG~vy~Kq-----------ek~e~Ae~~fqkA~-~INP~nsvi~~~~g~ 531 (638)
T KOG1126|consen 491 ---------------------------AWYGLGTVYLKQ-----------EKLEFAEFHFQKAV-EINPSNSVILCHIGR 531 (638)
T ss_pred ---------------------------HHHhhhhheecc-----------chhhHHHHHHHhhh-cCCccchhHHhhhhH
Confidence 555556665443 45788888999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
++.+.|+.|+|+.+|++|+.++|.++ -+.+..|.++..+++|++|+..+++..+..| +...+++.+|.++.++|+.+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn~-l~~~~~~~il~~~~~~~eal~~LEeLk~~vP--~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKNP-LCKYHRASILFSLGRYVEALQELEELKELVP--QESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCCc-hhHHHHHHHHHhhcchHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHccch
Confidence 99999999999999999999999985 8888999999999999999999999999999 88889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 013299 406 GAVETYTHLLAALQVQTK 423 (446)
Q Consensus 406 eA~~~~~~~l~l~~~~~~ 423 (446)
.|+..|--++++.|+..+
T Consensus 609 ~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhHHHhcCCCccch
Confidence 999999999998876444
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.3e-26 Score=230.11 Aligned_cols=258 Identities=16% Similarity=0.149 Sum_probs=232.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHH-HHHhcCCCCCCCh
Q 013299 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLL-RTLLSGSEDPKCL 231 (446)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~-~~al~~~~~P~~~ 231 (446)
+-...++-.++...+|.+|...++|++|..+|+.+-++.|-..+..--+..++|.+.+.- ++..+ +..+ ..+|+.|
T Consensus 345 lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v-~Ls~Laq~Li--~~~~~sP 421 (638)
T KOG1126|consen 345 LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV-ALSYLAQDLI--DTDPNSP 421 (638)
T ss_pred hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH-HHHHHHHHHH--hhCCCCc
Confidence 345556778999999999999999999999999999999999999999999999998644 45444 5666 8899999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
+.|..+|. |+..+++.+.|+.+|+||+++ +|. .+.+|..+|.-+.. .+.+|+|..+|++|+ .
T Consensus 422 esWca~GN-cfSLQkdh~~Aik~f~RAiQl-dp~----faYayTLlGhE~~~-----------~ee~d~a~~~fr~Al-~ 483 (638)
T KOG1126|consen 422 ESWCALGN-CFSLQKDHDTAIKCFKRAIQL-DPR----FAYAYTLLGHESIA-----------TEEFDKAMKSFRKAL-G 483 (638)
T ss_pred HHHHHhcc-hhhhhhHHHHHHHHHHHhhcc-CCc----cchhhhhcCChhhh-----------hHHHHhHHHHHHhhh-c
Confidence 99997765 566678999999999999995 443 26789999986644 357999999999999 9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
.+|++..|||.+|.+|.++++++.|+-+|++|+.++|.+ ......+|.++.++|+.++|+..+++|+-++| .++...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~--kn~l~~ 560 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-SVILCHIGRIQHQLKRKDKALQLYEKAIHLDP--KNPLCK 560 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC--CCchhH
Confidence 999999999999999999999999999999999999999 59999999999999999999999999999999 799999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccccC
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVSTK 444 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (446)
|.+|.++...+++++|+..++++.++. |+++.|+|..+|++++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v----------P~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV----------PQESSVFALLGKIYKR 603 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC----------cchHHHHHHHHHHHHH
Confidence 999999999999999999999999998 8999999999998764
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2e-24 Score=216.23 Aligned_cols=232 Identities=17% Similarity=0.091 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH-----HHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-----ALLI 236 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~-----a~~~ 236 (446)
.++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++ ..+|++.. .+..
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE--KLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH--HhcCCcchHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999 77777543 2334
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~ 316 (446)
++.+ +...|++++|+.+++++++..|.. ..+++.+|.++... |++++|+..|++++ +.+|++
T Consensus 186 la~~-~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~p~~ 247 (389)
T PRK11788 186 LAQQ-ALARGDLDAARALLKKALAADPQC-----VRASILLGDLALAQ-----------GDYAAAIEALERVE-EQDPEY 247 (389)
T ss_pred HHHH-HHhCCCHHHHHHHHHHHHhHCcCC-----HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHChhh
Confidence 4444 345789999999999999964432 46788888888654 57899999999999 999987
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 317 -LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 317 -~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
..++..++.++...|++++|+..+++++..+|+. ..+..++.++...|++++|+..++++++.+| ++..+...++
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P--~~~~~~~l~~ 323 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--DLLLALAQLLEEQEGPEAAQALLREQLRRHP--SLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc--CHHHHHHHHH
Confidence 4678899999999999999999999999999986 4458899999999999999999999999999 7766554444
Q ss_pred HHHHH--hCCHHHHHHHHHHHHHH
Q 013299 396 KVQLV--QGQLKGAVETYTHLLAA 417 (446)
Q Consensus 396 ~~~~~--~g~~~eA~~~~~~~l~l 417 (446)
..+.. .|+.++++..+++.++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH
Confidence 33322 56999999999988863
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5e-24 Score=204.29 Aligned_cols=237 Identities=13% Similarity=0.066 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
+.++.+.|..+...|++-.|.+.|+++|.++|.+...|..+|.+|...++-++-...|.+|. .+||+++++|+..|.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~--~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE--DLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH--hcCCCCCchhHhHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013299 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~ 320 (446)
.+. ++++++|+.-|++++++.|.+ ..++..++.+..+ +++++++...|+.+. +.-|+-++++
T Consensus 404 ~fl-L~q~e~A~aDF~Kai~L~pe~-----~~~~iQl~~a~Yr-----------~~k~~~~m~~Fee~k-kkFP~~~Evy 465 (606)
T KOG0547|consen 404 RFL-LQQYEEAIADFQKAISLDPEN-----AYAYIQLCCALYR-----------QHKIAESMKTFEEAK-KKFPNCPEVY 465 (606)
T ss_pred HHH-HHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH-HhCCCCchHH
Confidence 665 689999999999999965443 5678888887755 457899999999999 9999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG------SNLKGWLLMARILS-AQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~------~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
..-|.++..++++++|++.|.+|+.|.|. ++ ..+.+.|.+.. -.+++..|+..+++|++++| .--.++..
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~-~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp--kce~A~~t 542 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA-APLVHKALLVLQWKEDINQAENLLRKAIELDP--KCEQAYET 542 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc-hhhhhhhHhhhchhhhHHHHHHHHHHHHccCc--hHHHHHHH
Confidence 99999999999999999999999999999 64 66666665543 46899999999999999999 67788999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+|.+..++|+.++|++.|++++.+..-
T Consensus 543 laq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 543 LAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888754
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2.8e-24 Score=215.24 Aligned_cols=268 Identities=17% Similarity=0.006 Sum_probs=230.3
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc----HHHHHHHHHHHHH
Q 013299 132 FVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR----KERYHILALCYYG 207 (446)
Q Consensus 132 ~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~ 207 (446)
+...|++++|+..+ ..+++.+|+++.++..+|.++...|++++|+..+++++...+.. ..+++.+|.++..
T Consensus 45 ~~~~~~~~~A~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 45 FLLNEQPDKAIDLF-----IEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHhcCChHHHHHHH-----HHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44567899999886 55677899999999999999999999999999999999864332 3578999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhh
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (446)
.|++++|+..|++++ ..+|.+..++..++.++. ..|++++|+..++++++..+.+........+..+|.++..
T Consensus 120 ~g~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---- 192 (389)
T PRK11788 120 AGLLDRAEELFLQLV--DEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA---- 192 (389)
T ss_pred CCCHHHHHHHHHHHH--cCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----
Confidence 999999999999999 889999988888887755 4789999999999999854433221223345567776654
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC
Q 013299 288 AITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 288 ~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~ 367 (446)
.+++++|+..|++++ +.+|++..+++.+|.++...|++++|+..+++++..+|++...++..++.++...|+
T Consensus 193 -------~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 193 -------RGDLDAARALLKKAL-AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred -------CCCHHHHHHHHHHHH-hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 367899999999999 999999999999999999999999999999999999998733678899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 368 YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 368 ~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+++|+..++++++..| +.. .+..++.++...|++++|+..++++++..|+..
T Consensus 265 ~~~A~~~l~~~~~~~p--~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 265 EAEGLEFLRRALEEYP--GAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHHHHHHHHHHHhCC--Cch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 9999999999999999 654 448899999999999999999999999987644
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.4e-22 Score=189.93 Aligned_cols=227 Identities=12% Similarity=0.033 Sum_probs=201.8
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
++.-.|+.-.|...+ +.++...|.++..|..+|.+|....+.++-...|.+|.++||.+++.|++.|.+++-+++
T Consensus 335 F~fL~g~~~~a~~d~-----~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDF-----DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhcCCchhhhhhH-----HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 334445555554443 677888999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (446)
|++|+.-|++++ .++|+++.++..++-..|+ .+++++++..|+.+++..|.. +.++...+.++..+
T Consensus 410 ~e~A~aDF~Kai--~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~~-----~Evy~~fAeiLtDq------ 475 (606)
T KOG0547|consen 410 YEEAIADFQKAI--SLDPENAYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPNC-----PEVYNLFAEILTDQ------ 475 (606)
T ss_pred HHHHHHHHHHHh--hcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCC-----chHHHHHHHHHhhH------
Confidence 999999999999 9999999999888777666 579999999999999988765 56888888888664
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 291 DFDRATRQAKALQALVSAARSTNMR------DLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 291 ~~~~~~~~~eAl~~~~~al~~~~P~------~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
+++++|++.|.+|+ ++.|. ++..+.+-|.+..+ .+++..|+..+++|+++||... .++..||.+..
T Consensus 476 -----qqFd~A~k~YD~ai-~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~l 548 (606)
T KOG0547|consen 476 -----QQFDKAVKQYDKAI-ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFEL 548 (606)
T ss_pred -----HhHHHHHHHHHHHH-hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHH
Confidence 57999999999999 99999 88888888877665 5899999999999999999995 99999999999
Q ss_pred HccCHHHHHHHHHHHHhhcC
Q 013299 364 AQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p 383 (446)
.+|+.++|++.|++++.+.-
T Consensus 549 Q~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999997754
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=3.5e-24 Score=205.04 Aligned_cols=265 Identities=20% Similarity=0.117 Sum_probs=118.2
Q ss_pred ccCccccCCCcHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 013299 127 QMGSSFVPRNNIEEAILLLMILLRKVALKR-IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY 205 (446)
Q Consensus 127 ~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~-~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 205 (446)
.++.++...|++++|+..+. ..+... .|++++.|..+|.+....++++.|+++|++++..++.++..+..++.+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~----~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLK----KAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34556778899999998762 222333 489999999999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 206 YGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
...+++++|+..++++. ..++ ++..+...+.++ ...++++++...++++.+. ++.. ..+..+..+|.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~--~~~~-~~~~l~~~l~~~-~~~~~~~~~~~~l~~~~~~-~~~~--~~~~~~~~~a~~~~~~- 159 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAY--ERDG-DPRYLLSALQLY-YRLGDYDEAEELLEKLEEL-PAAP--DSARFWLALAEIYEQL- 159 (280)
T ss_dssp ---------------------------------H-H-HHTT-HHHHHHHHHHHHH--T-----T-HHHHHHHHHHHHHC-
T ss_pred ccccccccccccccccc--cccc-ccchhhHHHHHH-HHHhHHHHHHHHHHHHHhc-cCCC--CCHHHHHHHHHHHHHc-
Confidence 79999999999999998 5444 344444444444 4468999999999998863 3211 2367788899988654
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
|+.++|+.+|++++ +++|+|+.++..++.++...|+.+++...++......|+++ ..|..+|.++..+
T Consensus 160 ----------G~~~~A~~~~~~al-~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~l 227 (280)
T PF13429_consen 160 ----------GDPDKALRDYRKAL-ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-DLWDALAAAYLQL 227 (280)
T ss_dssp ----------CHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-CHCHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-HHHHHHHHHhccc
Confidence 57899999999999 99999999999999999999999999999999988889986 8999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
|++++|+.+++++++.+| +++.++.++|.++...|+.++|+..+++++..-
T Consensus 228 g~~~~Al~~~~~~~~~~p--~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNP--DDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp T-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHT-------------------
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999 999999999999999999999999999998753
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=9.4e-21 Score=194.85 Aligned_cols=346 Identities=16% Similarity=0.114 Sum_probs=185.5
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
-+++-+|...+.-|+|-.|...|+.+|.+. |...|+. .++ .|.+..+.|+.+.|+..|.+++
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~in----p~~~aD~-----rIg---------ig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRIN----PACKADV-----RIG---------IGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcC----cccCCCc-----cch---------hhhHHHhccchhhHHHHHHHHH
Confidence 356678888888889999999999988774 3333432 222 2467788999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
++ +|.+..++ -.++++.+.. .....+..+..++ ..+...+|.+|.+..+|+.-
T Consensus 227 qL----dp~~v~al-v~L~~~~l~~-----------------~d~~s~~~~~~ll-----~~ay~~n~~nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 227 QL----DPTCVSAL-VALGEVDLNF-----------------NDSDSYKKGVQLL-----QRAYKENNENPVALNHLANH 279 (1018)
T ss_pred hc----ChhhHHHH-HHHHHHHHHc-----------------cchHHHHHHHHHH-----HHHHhhcCCCcHHHHHHHHH
Confidence 98 77664432 2333332211 1112233444433 23334556666666666666
Q ss_pred HHhcCCHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC-hHHHHHHHHHHhcCCC
Q 013299 171 FSIAGDLSSLATQIEELLPGI---INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIASKICGEYPD 246 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~-~~a~~~~~~~~~~~~~ 246 (446)
+...|+|+.+....+.++... +--++.+|++|.+++.+|+|++|...|.+++ ..+|++ .-.++.+|.+++. .|
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~GlgQm~i~-~~ 356 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLVGLGQMYIK-RG 356 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCccccccchhHHHHH-hc
Confidence 666666666666555555443 2223445666666666666666666666666 555555 3344444444333 45
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~ 326 (446)
..++|+.+|+++++..|+. ......||..|...+. .....++|..++.+++ +..|.|.++|..+|.+
T Consensus 357 dle~s~~~fEkv~k~~p~~-----~etm~iLG~Lya~~~~-------~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNN-----YETMKILGCLYAHSAK-------KQEKRDKASNVLGKVL-EQTPVDSEAWLELAQL 423 (1018)
T ss_pred hHHHHHHHHHHHHHhCcch-----HHHHHHHHhHHHhhhh-------hhHHHHHHHHHHHHHH-hcccccHHHHHHHHHH
Confidence 5566666666666544433 2344445555433310 1123455555555555 5555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----cCCC---CcHHHHHH
Q 013299 327 YAEQRKLNAAHYYAKMLLKL-----EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ-----TGKW---EQGELLRT 393 (446)
Q Consensus 327 ~~~~~~~~~A~~~~~~al~l-----~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~~~ 393 (446)
+... +.-.++..|.+|+.+ .+ -|.+..+++|..++..|.+.+|...++.|+.. +++. -+....|+
T Consensus 424 ~e~~-d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 424 LEQT-DPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHhc-ChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 4432 233335555555421 11 12355555555555555555555555555543 1100 01223555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+|.++...++++.|.+.|+.++.-.|
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 55555555555555555555555443
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=6.4e-22 Score=206.46 Aligned_cols=253 Identities=12% Similarity=-0.081 Sum_probs=210.8
Q ss_pred CCCCHHHHH--HHHHHHHhc---CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC---------CChHHHHHHHHHHh
Q 013299 157 IEWDPSILD--HLSFAFSIA---GDLSSLATQIEELLPGIINRKERYHILALCYYGA---------GEDLVALNLLRTLL 222 (446)
Q Consensus 157 ~p~~~~~~~--~lg~~l~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~eA~~~~~~al 222 (446)
.|.+.++|. ..|..+... +.+++|++.|+++++++|+++.+|..+|.++... +++++|+..+++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 456666543 455544332 3568999999999999999999999999987744 34899999999999
Q ss_pred cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHH
Q 013299 223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302 (446)
Q Consensus 223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl 302 (446)
+++|+++.++..+|.++. ..|++++|+.+|+++++..|.+ +.+++.+|.++... |++++|+
T Consensus 332 --~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~-----------G~~~eAi 392 (553)
T PRK12370 332 --ELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWNLFMA-----------GQLEEAL 392 (553)
T ss_pred --hcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHC-----------CCHHHHH
Confidence 999999999998877655 4689999999999999965443 57899999998765 5789999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
..+++++ +++|+++.+++.++.++...|++++|+..+++++..+ |+++ .++.++|.++..+|++++|...++++...
T Consensus 393 ~~~~~Al-~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~-~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 393 QTINECL-KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNP-ILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHH-hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCH-HHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999999 9999999988888888888999999999999999886 7774 88999999999999999999999999988
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhH
Q 013299 382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKV 434 (446)
Q Consensus 382 ~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~ 434 (446)
.| ++..++..++.++...| ++|...++++++.....+...+..|.++.+
T Consensus 471 ~~--~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 471 EI--TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred cc--hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 88 88888899999998888 588888988888776555444444444433
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.8e-21 Score=182.40 Aligned_cols=346 Identities=16% Similarity=0.092 Sum_probs=213.4
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHH---HH---------------HHhHHHH
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNR---AV---------------ELLPELW 73 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~---a~---------------~~l~~~~ 73 (446)
.+|..|+.+.+.|....|+..+..++.. -|-.|++|.++...+.. +. ..++.++
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~--------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNR--------YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhc--------CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 4688999999999999999999998864 35445444333321100 00 0122344
Q ss_pred HHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHH
Q 013299 74 KLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVA 153 (446)
Q Consensus 74 ~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~ 153 (446)
....+.++++.-+.+.+....... ..+..+.|. +...+.++++|+..+ +.+
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~----~~i~~~~A~--------------------~~y~~rDfD~a~s~F-----eei 288 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNS----MYIKTQIAA--------------------ASYNQRDFDQAESVF-----EEI 288 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc----HHHHHHHHH--------------------HHhhhhhHHHHHHHH-----HHH
Confidence 555566666666666555411111 112222221 222344677777665 455
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a 233 (446)
.+.+|-..+-.....+++.-..+-.+-.-.-+.+..+|--.+++.--.|+-|.-.++.+.|+..|++|+ ++||+...+
T Consensus 289 ~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL--kLNp~~~~a 366 (559)
T KOG1155|consen 289 RKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL--KLNPKYLSA 366 (559)
T ss_pred HhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH--hcCcchhHH
Confidence 566665555555555555544443333333344555666666666666666666677777777777777 677777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
|..+|--+.+ +.+...|+..|++|++..|.| -++|+-||.+|..+ +.+.=|+-+|++|+ +..
T Consensus 367 WTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~D-----yRAWYGLGQaYeim-----------~Mh~YaLyYfqkA~-~~k 428 (559)
T KOG1155|consen 367 WTLMGHEYVE-MKNTHAAIESYRRAVDINPRD-----YRAWYGLGQAYEIM-----------KMHFYALYYFQKAL-ELK 428 (559)
T ss_pred HHHhhHHHHH-hcccHHHHHHHHHHHhcCchh-----HHHHhhhhHHHHHh-----------cchHHHHHHHHHHH-hcC
Confidence 7666655443 455667777777777744333 46777777776443 34566777777777 777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-------hcCCCC
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD-------QTGKWE 386 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------~~p~~~ 386 (446)
|+|+..|..||.+|.+.++.++|+.+|++|+.....+ ..++..+|.++..++++.+|..+|++.++ ..| +
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~--~ 505 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD--E 505 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch--H
Confidence 7777777777777777777777777777777776665 36777777777777777777777777775 233 3
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 387 ~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
-..+...++.-+.+.+++++|-.+...++..
T Consensus 506 t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 4555555777777777777777766666554
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=1e-21 Score=204.96 Aligned_cols=263 Identities=13% Similarity=-0.017 Sum_probs=218.3
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Q 013299 137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA---------GDLSSLATQIEELLPGIINRKERYHILALCYYG 207 (446)
Q Consensus 137 ~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 207 (446)
.+++|+..+ +.+++.+|+++.+|..+|.++... +++++|+..++++++++|+++.+|..+|.++..
T Consensus 276 ~~~~A~~~~-----~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 276 SLQQALKLL-----TQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHH-----HHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 456777765 567899999999999999877633 348999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhh
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (446)
.|++++|+..|++++ +++|+++.+++.+|.++. ..|++++|+.+++++++..|.+ ..+++.++.++..
T Consensus 351 ~g~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~-----~~~~~~~~~~~~~---- 418 (553)
T PRK12370 351 HSEYIVGSLLFKQAN--LLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTR-----AAAGITKLWITYY---- 418 (553)
T ss_pred ccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHh----
Confidence 999999999999999 999999999998877655 5799999999999999965443 2333444444433
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 013299 288 AITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 288 ~~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g 366 (446)
.|++++|+..+++++ ..+ |+++.++.++|.++..+|++++|+..+++.....|++ ..++..++.++..+|
T Consensus 419 -------~g~~eeA~~~~~~~l-~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 489 (553)
T PRK12370 419 -------HTGIDDAIRLGDELR-SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG-LIAVNLLYAEYCQNS 489 (553)
T ss_pred -------ccCHHHHHHHHHHHH-HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh-HHHHHHHHHHHhccH
Confidence 356899999999999 875 8899999999999999999999999999999999998 589999999999988
Q ss_pred CHHHHHHHHHHHHhh---cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhh
Q 013299 367 RYEDAETILNAALDQ---TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (446)
Q Consensus 367 ~~~eA~~~~~~al~~---~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~ 433 (446)
+ +|...+++.++. .| .++. ..+.++.-.|+.+.+.-. +++.+-......+..-+|.|-.
T Consensus 490 ~--~a~~~l~~ll~~~~~~~--~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~ 551 (553)
T PRK12370 490 E--RALPTIREFLESEQRID--NNPG---LLPLVLVAHGEAIAEKMW-NKFKNEDNIWFKRWKQDPRLIK 551 (553)
T ss_pred H--HHHHHHHHHHHHhhHhh--cCch---HHHHHHHHHhhhHHHHHH-HHhhccchHhhhhhhcCchhhc
Confidence 4 777777776654 33 3322 377788889999988888 8888887777778888887754
No 28
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=3.8e-21 Score=177.37 Aligned_cols=330 Identities=17% Similarity=0.149 Sum_probs=241.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
..++|.+|-+|..+|+-..|+..+.++|+. .|+ +..|...-|.+++++|.+++|+.-|+.+
T Consensus 72 Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpD-----------F~~ARiQRg~vllK~Gele~A~~DF~~v 132 (504)
T KOG0624|consen 72 YQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPD-----------FMAARIQRGVVLLKQGELEQAEADFDQV 132 (504)
T ss_pred HHHHHHHHHHHhhhcCCccchhhHHHHHhc--------Ccc-----------HHHHHHHhchhhhhcccHHHHHHHHHHH
Confidence 456777888888888888888888887775 344 4567777789999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
|.-.|+..... ..+.+++..-- . .....++ ..+...|+...+|... ..+++..|+++..+...+.
T Consensus 133 l~~~~s~~~~~--eaqskl~~~~e--~-----~~l~~ql-~s~~~~GD~~~ai~~i-----~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 133 LQHEPSNGLVL--EAQSKLALIQE--H-----WVLVQQL-KSASGSGDCQNAIEMI-----THLLEIQPWDASLRQARAK 197 (504)
T ss_pred HhcCCCcchhH--HHHHHHHhHHH--H-----HHHHHHH-HHHhcCCchhhHHHHH-----HHHHhcCcchhHHHHHHHH
Confidence 99822211111 11222221100 0 0000011 1233467888888764 6678999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
+|...|++..||..++.+-++..++.+.+|.++.+++..|+.+.++...+++| ++||++-..+-. |.+..+..
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL--KldpdHK~Cf~~-----YKklkKv~ 270 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL--KLDPDHKLCFPF-----YKKLKKVV 270 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH--ccCcchhhHHHH-----HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 899998764421 23233333
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH----HHHH
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY----RLSL 325 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~----~lg~ 325 (446)
..+...+++++ .+++.++++..++++ +.+|..+.+.+ .+..
T Consensus 271 K~les~e~~ie----------------------------------~~~~t~cle~ge~vl-k~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 271 KSLESAEQAIE----------------------------------EKHWTECLEAGEKVL-KNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHh----------------------------------hhhHHHHHHHHHHHH-hcCCcccceeeeeeheeee
Confidence 44444443333 346788899999999 88888766554 4567
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH--HH-HHHHh-
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK--AK-VQLVQ- 401 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~--a~-~~~~~- 401 (446)
++..-+++.+|++.+.+++..+|++ +.+++..|..|+.-..|++|+..|++|++.+| ++-.+.--+ |. +....
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~d-v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~--sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDD-VQVLCDRAEAYLGDEMYDDAIHDYEKALELNE--SNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHhc
Confidence 7778889999999999999999998 69999999999999999999999999999888 554443222 11 11111
Q ss_pred -------------CCHHHHHHHHHHHHHHH
Q 013299 402 -------------GQLKGAVETYTHLLAAL 418 (446)
Q Consensus 402 -------------g~~~eA~~~~~~~l~l~ 418 (446)
-...|-...|+++-.-|
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkW 422 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKW 422 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhc
Confidence 23357778888877766
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-21 Score=191.45 Aligned_cols=379 Identities=16% Similarity=0.119 Sum_probs=277.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHH------HHHHHhhhcCCCCCCCCccccHHHH-HHHHHHHhHHHHHHhCChHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVI------LDIVESSFAEGFPENLGADCKLQET-LNRAVELLPELWKLADAPRET 82 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~------l~~~~~~~~~~~~~~~~~~~~l~~~-~~~a~~~l~~~~~~~g~~~eA 82 (446)
.-+.|..+.|+.++.++++|.....+. +.-.++.. .+.-+..+..-..... -......-|.+|....+.++|
T Consensus 82 ~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~-~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 82 IACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA-ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh-hceeccCcccccccccchhceeeeeeehhhhhccHHHH
Confidence 345677888888888888888776632 11111110 0000000000000000 112333456788999999999
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHH--------HHHhhhcCCCC------------------CC--cc----c---cc
Q 013299 83 IMSYRRALLPCWNLDAETTAKLQKEFA--------IFLLYCGGETC------------------PP--NL----R---SQ 127 (446)
Q Consensus 83 ~~~y~~al~~~~~~~~~~~~~l~~~~a--------~~ll~~~~~~~------------------~~--~~----~---~~ 127 (446)
-..|+++|.. |+.+...+..-.. ++++......+ +. +. + ..
T Consensus 161 r~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 161 RDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 9999999998 8887654311111 11111110000 00 00 0 00
Q ss_pred c-------------CccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 013299 128 M-------------GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILD-HLSFAFSIAGDLSSLATQIEELLPGIIN 193 (446)
Q Consensus 128 ~-------------~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~-~lg~~l~~~~~~~~A~~~~~~al~~~p~ 193 (446)
+ ...+....++.+-.. +.+.+++.+|-++.++- ++| ++.+.|+..+-...=-+.++..|+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~k-----it~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~ 310 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLK-----ITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPS 310 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHH-----HhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCC
Confidence 0 001111222222222 23577888898887775 556 888999988888888899999999
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a 273 (446)
.+-.|+..|.-|+..|++.+|...|.++. .+||....+|+..|-.+ .-.+..++|+..|.+|-+..++.. ..
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat--~lD~~fgpaWl~fghsf-a~e~EhdQAmaaY~tAarl~~G~h-----lP 382 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKAT--TLDPTFGPAWLAFGHSF-AGEGEHDQAMAAYFTAARLMPGCH-----LP 382 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHh--hcCccccHHHHHHhHHh-hhcchHHHHHHHHHHHHHhccCCc-----ch
Confidence 99999999999999999999999999999 99999999999887764 446899999999999999887653 35
Q ss_pred HHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC----
Q 013299 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG---- 349 (446)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~---- 349 (446)
.+++|+-|.. .+.++-|...|..|+ .+.|.||-++..+|.+.+..+.+.+|+.+|++++..-+.
T Consensus 383 ~LYlgmey~~-----------t~n~kLAe~Ff~~A~-ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 383 SLYLGMEYMR-----------TNNLKLAEKFFKQAL-AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred HHHHHHHHHH-----------hccHHHHHHHHHHHH-hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 6788887754 456889999999999 999999999999999999999999999999999943222
Q ss_pred CC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 350 SN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 350 ~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.+ .+.|.+||.++.++++|++|+.+++++|.+.| .++..+-..|-++..+|+++.|++.|.++|.+.|++
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~--k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP--KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC--CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 10 24688999999999999999999999999999 899999999999999999999999999999999875
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-20 Score=179.47 Aligned_cols=321 Identities=16% Similarity=0.118 Sum_probs=212.2
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHh----hh-cCCCCCCcc----ccccCccccC
Q 013299 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLL----YC-GGETCPPNL----RSQMGSSFVP 134 (446)
Q Consensus 64 ~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll----~~-~~~~~~~~~----~~~~~~~~~~ 134 (446)
-.+.+-|.++.+.|..+.|+..|..++.. -|-+..+. ..+..... .. .....|.+. ...+..++.+
T Consensus 165 fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AW-leL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 165 FLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAW-LELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHH-HHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 35667889999999999999999999987 44332211 11111100 00 000000000 0011112222
Q ss_pred CCcHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKR-IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~-~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
....++++.-. ...... -|.++-.-...|.+.....++++|+..|+..++.+|-..+-.-.+..+++-.++-.+
T Consensus 240 l~q~~e~~~k~-----e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 240 LHQHEEALQKK-----ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHH-----HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 22333333321 111111 344444444555555555555555555555555555554444444444444333211
Q ss_pred HHHHH-HHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchH
Q 013299 214 ALNLL-RTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 214 A~~~~-~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
+..+ +.+. .+|-=-++.....|. ++.-.++.+.|+.+|++++++ +|. ...+|..+|.-|..+
T Consensus 315 -Ls~LA~~v~--~idKyR~ETCCiIaN-YYSlr~eHEKAv~YFkRALkL-Np~----~~~aWTLmGHEyvEm-------- 377 (559)
T KOG1155|consen 315 -LSYLAQNVS--NIDKYRPETCCIIAN-YYSLRSEHEKAVMYFKRALKL-NPK----YLSAWTLMGHEYVEM-------- 377 (559)
T ss_pred -HHHHHHHHH--HhccCCccceeeehh-HHHHHHhHHHHHHHHHHHHhc-Ccc----hhHHHHHhhHHHHHh--------
Confidence 1111 2222 122212222211222 233456789999999999995 444 267999999988664
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
+....|+++|++|+ +++|.|..+||.||++|..++...=|+-+|++|+.+.|.++ ..|..||.+|.++++.+||+
T Consensus 378 ---KNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs-Rlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 378 ---KNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS-RLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred ---cccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHhccHHHHH
Confidence 45689999999999 99999999999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
.+|.+|+.... .+..+++.+|.++.++++.++|..+|++-++..
T Consensus 453 KCykrai~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 453 KCYKRAILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999877 688999999999999999999999999999855
No 31
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=192.46 Aligned_cols=243 Identities=17% Similarity=0.124 Sum_probs=206.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY 244 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~ 244 (446)
+..|..+.+.|+..+|+=+|+.+++.+|.+.++|..||.+....++-..|+..+++|+ +++|+|..+++.++ +++-.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl--~LdP~NleaLmaLA-VSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL--ELDPTNLEALMALA-VSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH--hcCCccHHHHHHHH-HHHhh
Confidence 4679999999999999999999999999999999999999999999999999999999 99999999998876 55666
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhh-chHHHHHHHHHHHHHHHHHHHhhCC--CCHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI-TDFDRATRQAKALQALVSAARSTNM--RDLSILY 321 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~-~~~~~~~~~~eAl~~~~~al~~~~P--~~~~a~~ 321 (446)
.|.-.+|..++.+=|..-|+. ..+...-... .... ........+..-.+.|-.+. ..+| .||+++.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y---------~~l~~a~~~~-~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKY---------VHLVSAGENE-DFENTKSFLDSSHLAHIQELFLEAA-RQLPTKIDPDVQS 434 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccc---------hhccccCccc-cccCCcCCCCHHHHHHHHHHHHHHH-HhCCCCCChhHHh
Confidence 778889999999988843331 1111110000 0000 00001234566778899999 8999 8999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
.||.+|...|+++.|+.+|+.||..+|++ ...|+.||.++..-.+..||+..|.+|+++.| ....++|++|..++.+
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd-~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP--~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPND-YLLWNRLGATLANGNRSEEAISAYNRALQLQP--GYVRVRYNLGISCMNL 511 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCch-HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC--Ceeeeehhhhhhhhhh
Confidence 99999999999999999999999999999 59999999999999999999999999999999 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhh
Q 013299 402 GQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 402 g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
|-|+||+++|-.+|.+.++..+.
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred hhHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999884443
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1.2e-19 Score=193.88 Aligned_cols=361 Identities=14% Similarity=0.047 Sum_probs=259.6
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
++..|..|+...+.|++++|+..|+++++.. |.+. .++.-+..++...|+.++|+.+++++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--------P~~~-----------~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--------PLQS-----------GQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--------ccch-----------hhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 4667899999999999999999999999873 4321 01113335666779999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
+.. +|.... ....+|. ++..+|++++|+.++ +.+++..|++++++..++.
T Consensus 95 ~~p----~n~~~~-~llalA~--------------------ly~~~gdyd~Aiely-----~kaL~~dP~n~~~l~gLa~ 144 (822)
T PRK14574 95 QSS----MNISSR-GLASAAR--------------------AYRNEKRWDQALALW-----QSSLKKDPTNPDLISGMIM 144 (822)
T ss_pred ccC----CCCCHH-HHHHHHH--------------------HHHHcCCHHHHHHHH-----HHHHhhCCCCHHHHHHHHH
Confidence 832 222111 1111122 234567888888876 6677888999988888888
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc------
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE------ 243 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~------ 243 (446)
++...++.++|++.++++++.+|++... ..++.++...++..+|+..|++++ ..+|++..++.....++-.
T Consensus 145 ~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll--~~~P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 145 TQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV--RLAPTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred HHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCcHH
Confidence 8888899999999999999998886554 556666666777777999999999 8888887765422211110
Q ss_pred -------CC-------------------------------C---CHHHHHHHHHHHHHHcCCCcc---h-----------
Q 013299 244 -------YP-------------------------------D---LAEEGATFASRALECLGDGCD---Q----------- 268 (446)
Q Consensus 244 -------~~-------------------------------~---~~~eA~~~~~~al~~~~~~~~---~----------- 268 (446)
.. + -.+.|+.-+++.+...++.++ .
T Consensus 222 a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~a 301 (822)
T PRK14574 222 ALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGA 301 (822)
T ss_pred HHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Confidence 00 0 122344444444442222111 0
Q ss_pred -----------------------hhhHHHHHhhchhHhhhhh-------------h-----hc-h----------HHHHH
Q 013299 269 -----------------------MESTANCLLGISLSAQSKV-------------A-----IT-D----------FDRAT 296 (446)
Q Consensus 269 -----------------------~~~~a~~~lg~~~~~~~~~-------------~-----~~-~----------~~~~~ 296 (446)
++..+....|.+|...+.- . .. + +...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 0111222223333222110 0 00 0 12457
Q ss_pred HHHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 297 RQAKALQALVSAARSTNM---------------RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P---------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
++++|..++++.. ...| +-.++...++.++.-.|++.+|++.+++.+...|.+ ...+..+|.+
T Consensus 382 ~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n-~~l~~~~A~v 459 (822)
T PRK14574 382 QLDKAYQFAVNYS-EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN-QNLRIALASI 459 (822)
T ss_pred cHHHHHHHHHHHH-hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 8999999999999 7444 334677788999999999999999999999999999 4999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 362 LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 362 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
+...|++.+|...++.++.++| ++..+.+.+|.+.+.+|++++|....+.+++..|++..+..
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~P--~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLAP--RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhCC--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999 89999999999999999999999999999999999886654
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=2.1e-20 Score=179.94 Aligned_cols=244 Identities=14% Similarity=0.018 Sum_probs=156.3
Q ss_pred HhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHh
Q 013299 75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVAL 154 (446)
Q Consensus 75 ~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l 154 (446)
..++.+.++..+.++|...+ .+|..........|. ++...|++++|+..+ +.++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g~--------------------~~~~~g~~~~A~~~~-----~~Al 91 (296)
T PRK11189 38 PTLQQEVILARLNQILASRD-LTDEERAQLHYERGV--------------------LYDSLGLRALARNDF-----SQAL 91 (296)
T ss_pred CchHHHHHHHHHHHHHcccc-CCcHhhHHHHHHHHH--------------------HHHHCCCHHHHHHHH-----HHHH
Confidence 34677788888888886421 133332222233332 334466777887765 4566
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
+.+|+++.+|+.+|.++...|++++|++.|+++++++|++..+|+++|.+++..|++++|+..|++++ +.+|+++...
T Consensus 92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al--~~~P~~~~~~ 169 (296)
T PRK11189 92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY--QDDPNDPYRA 169 (296)
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHH
Confidence 77788888888888888888888888888888888888888888888888888888888888888888 7888876422
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+.. ......++.++|+..+++++...+++. .....+.+.+|.... ...++.+.+.++.++ +++|
T Consensus 170 ~~~--~l~~~~~~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~lg~~~~------------~~~~~~~~~~~~~~~-~l~~ 233 (296)
T PRK11189 170 LWL--YLAESKLDPKQAKENLKQRYEKLDKEQ-WGWNIVEFYLGKISE------------ETLMERLKAGATDNT-ELAE 233 (296)
T ss_pred HHH--HHHHccCCHHHHHHHHHHHHhhCCccc-cHHHHHHHHccCCCH------------HHHHHHHHhcCCCcH-HHHH
Confidence 211 122345677888888877665433321 011122222222210 112445555556667 6777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~ 362 (446)
+.+++|+++|.++..+|++++|+.+|++|++++|.+-.+..+.+..+.
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 777888888888888888888888888888888633235555444433
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=2.1e-20 Score=179.95 Aligned_cols=239 Identities=13% Similarity=0.008 Sum_probs=180.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIE----WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p----~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 209 (446)
+.+..+.++..+ ..++...| ..+..|+.+|.++...|++++|+..|+++++++|+++.+|+++|.++...|
T Consensus 38 ~~~~~e~~i~~~-----~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 38 PTLQQEVILARL-----NQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG 112 (296)
T ss_pred CchHHHHHHHHH-----HHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 345567777664 34554334 346789999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI 289 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~ 289 (446)
++++|+..|++++ +++|++..++..+|.+++ ..|++++|+..++++++..|.++ ....|..++.
T Consensus 113 ~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~---~~~~~~~l~~---------- 176 (296)
T PRK11189 113 NFDAAYEAFDSVL--ELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDP---YRALWLYLAE---------- 176 (296)
T ss_pred CHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH----------
Confidence 9999999999999 999999999998876654 47999999999999999655442 1112222211
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH--HHH----HHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 290 TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAA--HYY----AKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 290 ~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A--~~~----~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
..+++++|+..|++++ ...+.+ .|. .+.++...|++.++ +.. ++++++++|+. .++|+++|.++.
T Consensus 177 ----~~~~~~~A~~~l~~~~-~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~-~ea~~~Lg~~~~ 247 (296)
T PRK11189 177 ----SKLDPKQAKENLKQRY-EKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERL-CETYFYLAKYYL 247 (296)
T ss_pred ----ccCCHHHHHHHHHHHH-hhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHH
Confidence 1346899999998877 554322 222 35555566665433 322 23344777787 499999999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 403 (446)
.+|++++|+.+|++|++.+|. ++.+..+.+..+....++
T Consensus 248 ~~g~~~~A~~~~~~Al~~~~~-~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 248 SLGDLDEAAALFKLALANNVY-NFVEHRYALLELALLGQD 286 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhh
Confidence 999999999999999999963 567766666555544433
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.6e-20 Score=179.21 Aligned_cols=225 Identities=13% Similarity=0.014 Sum_probs=195.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
.......|+.+-.|+-+|.-|...|++.+|..+|.++..+||....+|..+|.++...|..++|+.+|..|- ++-|+.
T Consensus 302 h~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa--rl~~G~ 379 (611)
T KOG1173|consen 302 HKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA--RLMPGC 379 (611)
T ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH--HhccCC
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999 899997
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
....+++|- -+...+..+-|..+|..|+.+.|.+ +.+...+|.+.+.. +.+.+|+.+|++++
T Consensus 380 hlP~LYlgm-ey~~t~n~kLAe~Ff~~A~ai~P~D-----plv~~Elgvvay~~-----------~~y~~A~~~f~~~l- 441 (611)
T KOG1173|consen 380 HLPSLYLGM-EYMRTNNLKLAEKFFKQALAIAPSD-----PLVLHELGVVAYTY-----------EEYPEALKYFQKAL- 441 (611)
T ss_pred cchHHHHHH-HHHHhccHHHHHHHHHHHHhcCCCc-----chhhhhhhheeehH-----------hhhHHHHHHHHHHH-
Confidence 666665554 4556789999999999999976665 46788899887643 46899999999988
Q ss_pred hhCCC-CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 311 STNMR-DL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 311 ~~~P~-~~------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+.-+. +. ..+.|||.++.+.+++++|+..|++++.+.|.+ +.++..+|.|+..+|+++.|++.|.++|.+.|
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 54332 22 347899999999999999999999999999999 59999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHH
Q 013299 384 KWEQGELLRTKAKVQ 398 (446)
Q Consensus 384 ~~~~~~~~~~~a~~~ 398 (446)
++..+--.++.+.
T Consensus 521 --~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 521 --DNIFISELLKLAI 533 (611)
T ss_pred --ccHHHHHHHHHHH
Confidence 7766655555443
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=7.7e-20 Score=168.06 Aligned_cols=204 Identities=18% Similarity=0.143 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
..+.++..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|+..|++++ ..+|++..++..++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL--TLNPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHH
Confidence 3467888899999999999999999999999999999999999999999999999999999999 88888877766655
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
.++. ..|++++|+.++++++.. + ..|..+.
T Consensus 107 ~~~~-~~g~~~~A~~~~~~~~~~-~------------------------------------------------~~~~~~~ 136 (234)
T TIGR02521 107 TFLC-QQGKYEQAMQQFEQAIED-P------------------------------------------------LYPQPAR 136 (234)
T ss_pred HHHH-HcccHHHHHHHHHHHHhc-c------------------------------------------------ccccchH
Confidence 5433 345555555555555541 1 1133445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+++++|.++...|++++|...+.+++..+|+++ .++..+|.++...|++++|+.++++++...| ++...++.++.++
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~ 213 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRP-ESLLELAELYYLRGQYKDARAYLERYQQTYN--QTAESLWLGIRIA 213 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 555666666666666666666666666666653 6666666666666666666666666666655 5555566666666
Q ss_pred HHhCCHHHHHHHHHHHHHH
Q 013299 399 LVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l 417 (446)
...|+.++|....+.+..+
T Consensus 214 ~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 214 RALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHhhHHHHHHHHHHHHhh
Confidence 6666666666665555443
No 37
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.1e-19 Score=173.91 Aligned_cols=377 Identities=12% Similarity=0.009 Sum_probs=257.8
Q ss_pred HHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCC--C-----------------ccccHHHHHHHHHHHhHHHH
Q 013299 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENL--G-----------------ADCKLQETLNRAVELLPELW 73 (446)
Q Consensus 13 ~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~--~-----------------~~~~l~~~~~~a~~~l~~~~ 73 (446)
.-.+|.+.+..|+|+.|+..|-.+|.+.+ .++.-.+ + .-.++.+.+..++.+.|..+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p----~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSP----TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCC----CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 44688999999999999999999988742 2211100 0 11234455778999999999
Q ss_pred HHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhh---cCCCCCCc----------cc---------------
Q 013299 74 KLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYC---GGETCPPN----------LR--------------- 125 (446)
Q Consensus 74 ~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~---~~~~~~~~----------~~--------------- 125 (446)
+-.|+|++|+..|.+.|+. +|.|.. +...++.+.... +.....|. ..
T Consensus 81 ~~lg~~~eA~~ay~~GL~~----d~~n~~-L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEK----DPSNKQ-LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HhcccHHHHHHHHHHHhhc----CCchHH-HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 9999999999999999999 887744 333333332111 00000000 00
Q ss_pred ----cccCccccCCCcHHHHHHHHHHH----HH-HHHh----hcCC---------------------CCHHHHHHHHHHH
Q 013299 126 ----SQMGSSFVPRNNIEEAILLLMIL----LR-KVAL----KRIE---------------------WDPSILDHLSFAF 171 (446)
Q Consensus 126 ----~~~~~~~~~~~~~~eA~~~l~~~----~~-~~~l----~~~p---------------------~~~~~~~~lg~~l 171 (446)
.++ ..+..-.+...+...++.. +. .... ...| .-....-.+|.+.
T Consensus 156 ~~~p~~l-~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNPTSL-KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCcHhh-hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 000 1111112223332222110 00 0000 0011 0122445899999
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH------HHHHHHHhcCC
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL------LIASKICGEYP 245 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~------~~~~~~~~~~~ 245 (446)
....+++.|++.|..++.++ .+...+.+.+.+|+..|.+.+++.....++ +..-..-.-+ +...+..+...
T Consensus 235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~--E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAV--EVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHH--HHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999 999999999999999999999998888888 3332211111 11122334556
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
++++.|+.+|.+++..... +.+. .+....++++...+... -++|.-..-...-|.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-------------~~~l-----------s~lk~~Ek~~k~~e~~a-~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-------------PDLL-----------SKLKEAEKALKEAERKA-YINPEKAEEEREKGN 366 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-------------HHHH-----------HHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHH
Confidence 8899999999998874221 1111 12345677777777777 788888777777788
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
.+...|+|..|+.+|.+|+..+|++ ...+.+.|.+|.++|.+..|+..++++++++| +...+|+..|.++..+.+++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~D-a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p--~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPED-ARLYSNRAACYLKLGEYPEALKDAKKCIELDP--NFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888 48888888888888888888888888888888 78888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCcc
Q 013299 406 GAVETYTHLLAALQVQTKTFSSDKR 430 (446)
Q Consensus 406 eA~~~~~~~l~l~~~~~~~~~~~~~ 430 (446)
.|+++|..+++++|.+.+..+...+
T Consensus 444 kAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHH
Confidence 8888888888888877766654433
No 38
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.8e-20 Score=183.95 Aligned_cols=254 Identities=15% Similarity=0.103 Sum_probs=200.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...|.+-+|+.++ ++++.++|.+.++|..||.+....++-..||.+++++++++|+|.++...||.+|...|.
T Consensus 294 ~lm~nG~L~~A~Laf-----EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAF-----EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHhcCCchHHHHHH-----HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 455667777887765 778899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHH--H------hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhH
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKI--C------GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS 282 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~--~------~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 282 (446)
-.+|+.++.+.| ...|....... ++. . +.....+..-...|-.+....+.. ..+.++..||+.|.
T Consensus 369 q~~Al~~L~~Wi--~~~p~y~~l~~--a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~---~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 369 QNQALKMLDKWI--RNKPKYVHLVS--AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK---IDPDVQSGLGVLYN 441 (579)
T ss_pred HHHHHHHHHHHH--HhCccchhccc--cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC---CChhHHhhhHHHHh
Confidence 999999999999 67775432111 000 0 000011222233344444434421 12678999999986
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 283 AQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~ 362 (446)
.. +.+++|+.+|+.|+ ..+|+|...|+.||-+++...+.++|+..|++|+.|.|.. +.++++||..+
T Consensus 442 ls-----------~efdraiDcf~~AL-~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~ 508 (579)
T KOG1125|consen 442 LS-----------GEFDRAVDCFEAAL-QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISC 508 (579)
T ss_pred cc-----------hHHHHHHHHHHHHH-hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhh
Confidence 53 67999999999999 9999999999999999999999999999999999999999 69999999999
Q ss_pred HHccCHHHHHHHHHHHHhhcCCC----C----cHHHHHHHHHHHHHhCCHHHHHH
Q 013299 363 SAQKRYEDAETILNAALDQTGKW----E----QGELLRTKAKVQLVQGQLKGAVE 409 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~p~~----~----~~~~~~~~a~~~~~~g~~~eA~~ 409 (446)
+.+|-|+||+.+|-.||.+.++. + +-.+|-++-.++..+++.|-+..
T Consensus 509 mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999999999999887631 1 12455555566666666654443
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=2.6e-21 Score=185.17 Aligned_cols=241 Identities=15% Similarity=0.051 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
.|. ... ..++.++...|++++|++++++.+.. .|+++..|..+|.+....|++++|+..|++++ ..+|.++..+
T Consensus 6 ~~~-~~~-l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~--~~~~~~~~~~ 81 (280)
T PF13429_consen 6 GPS-EEA-LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL--ASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 455 333 36799999999999999999766544 49999999999999999999999999999999 8899888877
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN- 313 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~- 313 (446)
..++.+ ...+++++|+..++++.+.. +++ ..+.....++. +.++++++...++++. ...
T Consensus 82 ~~l~~l--~~~~~~~~A~~~~~~~~~~~-~~~-----~~l~~~l~~~~-----------~~~~~~~~~~~l~~~~-~~~~ 141 (280)
T PF13429_consen 82 ERLIQL--LQDGDPEEALKLAEKAYERD-GDP-----RYLLSALQLYY-----------RLGDYDEAEELLEKLE-ELPA 141 (280)
T ss_dssp --------------------------------------------H-HH-----------HTT-HHHHHHHHHHHH-H-T-
T ss_pred cccccc--cccccccccccccccccccc-ccc-----chhhHHHHHHH-----------HHhHHHHHHHHHHHHH-hccC
Confidence 666655 35689999999999988743 322 22222333332 2456889999999977 666
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 314 -MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 314 -P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
|+++..|+.+|.++.+.|+.++|+..|+++++++|++ ..++..+++++...|+++++...++...+..| +++..+.
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 218 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-PDARNALAWLLIDMGDYDEAREALKRLLKAAP--DDPDLWD 218 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSCCHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHHHHHH
Confidence 7899999999999999999999999999999999999 49999999999999999999999998888878 7778899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
.+|.++...|++++|+..|++++...|+++..
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHHHhcccccccccccccccccccccccccc
Confidence 99999999999999999999999998765443
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=2.1e-18 Score=173.65 Aligned_cols=301 Identities=11% Similarity=-0.030 Sum_probs=226.7
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
-|.+....|+++.|.+...++.+..+ +|.. .. ...|. +...+|++++|...+
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~~~--~~~~-~~--llaA~--------------------aa~~~g~~~~A~~~l--- 141 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADHAA--EPVL-NL--IKAAE--------------------AAQQRGDEARANQHL--- 141 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcCC--CCHH-HH--HHHHH--------------------HHHHCCCHHHHHHHH---
Confidence 45677899999999999999988721 2211 00 11111 233468899998876
Q ss_pred HHHHHhhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCC
Q 013299 149 LRKVALKRIEWDP-SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED 227 (446)
Q Consensus 149 ~~~~~l~~~p~~~-~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~ 227 (446)
..+.+..|++. .+....+.++...|+++.|.+.+++.++..|+++.++..++.++...|++++|+..+++.+ +..
T Consensus 142 --~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~--k~~ 217 (409)
T TIGR00540 142 --EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA--KAG 217 (409)
T ss_pred --HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HcC
Confidence 34456678775 5666679999999999999999999999999999999999999999999999999999999 554
Q ss_pred CCChHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 228 PKCLPAL---LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 228 P~~~~a~---~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
+.++... ...+..-....+..+++...+.++.+..|.. .......+..++..+.. .|++++|++.
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~-~~~~~~l~~~~a~~l~~-----------~g~~~~A~~~ 285 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH-RRHNIALKIALAEHLID-----------CDDHDSAQEI 285 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH-HhCCHHHHHHHHHHHHH-----------CCChHHHHHH
Confidence 4333322 1111111111223344556777777755421 01125677777777755 4678999999
Q ss_pred HHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHccCHHHHHHHHH--HH
Q 013299 305 LVSAARSTNMRDLSIL--YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILN--AA 378 (446)
Q Consensus 305 ~~~al~~~~P~~~~a~--~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~~la~~~~~~g~~~eA~~~~~--~a 378 (446)
+++++ +..|++.... ..........++.+.+++.++++++.+|++ . ..+..+|+++..+|++++|..+++ ++
T Consensus 286 l~~~l-~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~-~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 286 IFDGL-KKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK-PKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHH-hhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 99999 9999998642 233334445688999999999999999998 6 677899999999999999999999 67
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 379 l~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
++..| ++. .+..+|.++.+.|+.++|.++|++++.+.
T Consensus 364 ~~~~p--~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 364 CKEQL--DAN-DLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred hhcCC--CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 78889 554 46699999999999999999999998764
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=6.1e-19 Score=180.57 Aligned_cols=311 Identities=16% Similarity=0.104 Sum_probs=232.2
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
.++.++..|++++|+.++.++|++ +|.+.... . .++.+|..+|+.+++....+.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkq----dp~~~~ay-~--------------------tL~~IyEqrGd~eK~l~~~ll- 198 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQ----DPRNPIAY-Y--------------------TLGEIYEQRGDIEKALNFWLL- 198 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh----CccchhhH-H--------------------HHHHHHHHcccHHHHHHHHHH-
Confidence 346677889999999999999999 76654322 2 233467788999999876532
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+...+|.|.+.|..++....++|++.+|.-||.+||+.+|.+....+..+.+|.++|++..|...|.+.+ .++|
T Consensus 199 ----AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~--~~~p 272 (895)
T KOG2076|consen 199 ----AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL--QLDP 272 (895)
T ss_pred ----HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH--hhCC
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred CC----hHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHcCC--CcchhhhHHHHHhhc-hhHhhhhhh----h-------
Q 013299 229 KC----LPALLIA-SKICGEYPDLAEEGATFASRALECLGD--GCDQMESTANCLLGI-SLSAQSKVA----I------- 289 (446)
Q Consensus 229 ~~----~~a~~~~-~~~~~~~~~~~~eA~~~~~~al~~~~~--~~~~~~~~a~~~lg~-~~~~~~~~~----~------- 289 (446)
.. ....... +.. +...+..+.|++.++.++..... ..+.....+-..+.. .+...++.. .
T Consensus 273 ~~d~er~~d~i~~~~~~-~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHY-FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred chhHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 21 1111111 222 33445558899999988873221 111111111111111 011100000 0
Q ss_pred --ch------------------------H---------HHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCH
Q 013299 290 --TD------------------------F---------DRATRQAKALQALVSAARSTNM-RDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 290 --~~------------------------~---------~~~~~~~eAl~~~~~al~~~~P-~~~~a~~~lg~~~~~~~~~ 333 (446)
.+ . .+.....+++..+..-- ...| ++++.++.++.++...|++
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccH
Confidence 00 0 11223345555543322 2223 4678999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
.+|+.++..++...+.....+|+.+|.+|+.+|+|++|+.+|+++|...| ++.++...++.++.++|++++|++.+.+
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p--~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP--DNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 99999999999988876557999999999999999999999999999999 9999999999999999999999999988
Q ss_pred HH
Q 013299 414 LL 415 (446)
Q Consensus 414 ~l 415 (446)
..
T Consensus 509 ~~ 510 (895)
T KOG2076|consen 509 II 510 (895)
T ss_pred cc
Confidence 66
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.4e-18 Score=165.49 Aligned_cols=264 Identities=15% Similarity=0.088 Sum_probs=224.0
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhcC--CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIE-WDPSILDHLSFAFSIAG--DLSSLATQIEELLPGIINRKERYHILALCYY 206 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p-~~~~~~~~lg~~l~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 206 (446)
+-+..+|+++.|+..+.. .-+++. ....+-.+|...+..+| ++..|.++-+.++.++.-++.+..+-|.+-+
T Consensus 427 ~~~lk~~d~~~aieilkv-----~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKV-----FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHhccCHHHHHHHHHH-----HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 456788999999987632 222222 23345566666666643 7889999999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 207 ~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
..|+++.|...|+++| .-+....+++++.| +.+..+|+.++|+.+|-+.-.++-.+ ..+++.++.+|..
T Consensus 502 ~ngd~dka~~~ykeal--~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn-----~evl~qianiye~--- 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEAL--NNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNN-----AEVLVQIANIYEL--- 570 (840)
T ss_pred ecCcHHHHHHHHHHHH--cCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHH---
Confidence 9999999999999999 77888888888765 44677899999999999887765443 6788888888854
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g 366 (446)
+.+..+|++++-++. .+-|+||.++..||.+|-+.|+-.+|.+++-...+-.|.+ .+...-||..|....
T Consensus 571 --------led~aqaie~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-ie~iewl~ayyidtq 640 (840)
T KOG2003|consen 571 --------LEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-IETIEWLAAYYIDTQ 640 (840)
T ss_pred --------hhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-hHHHHHHHHHHHhhH
Confidence 456789999999999 9999999999999999999999999999999999999999 598888999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 367 ~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
-.+.|+.++++|--..| +........+.|+.+.|++..|++.|+..-.-.|++
T Consensus 641 f~ekai~y~ekaaliqp--~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQP--NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 99999999999999999 777777888999999999999999999876666543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=8e-18 Score=169.52 Aligned_cols=303 Identities=12% Similarity=0.010 Sum_probs=228.3
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
......|......|++++|.+...++.+. .|.. .......+.++.++|+++.|..+|.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~-----------~~~~llaA~aa~~~g~~~~A~~~l~~a~ 145 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEP-----------VLNLIKAAEAAQQRGDEARANQHLEEAA 145 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456888899999999999998876654 2321 1234456788999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
+. .|++...+....+.+ +..+|++++|...+ +...+..|+++.++..++.+
T Consensus 146 ~~----~p~~~l~~~~~~a~l--------------------~l~~~~~~~Al~~l-----~~l~~~~P~~~~~l~ll~~~ 196 (409)
T TIGR00540 146 EL----AGNDNILVEIARTRI--------------------LLAQNELHAARHGV-----DKLLEMAPRHKEVLKLAEEA 196 (409)
T ss_pred Hh----CCcCchHHHHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHH
Confidence 87 333211111222332 33478899998876 66778889999999999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHH----HHHHHHHHCCChHHHHHHHHHHhcCCCCC----CChHHHHHHHHHHh
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYH----ILALCYYGAGEDLVALNLLRTLLSGSEDP----KCLPALLIASKICG 242 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~----~lg~~~~~~g~~~eA~~~~~~al~~~~~P----~~~~a~~~~~~~~~ 242 (446)
+...|++++|.+.+++..+..+.++.... ....-+...+..+++...+.++. ...| +++.+++..+.. +
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~--~~~p~~~~~~~~l~~~~a~~-l 273 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW--KNQPRHRRHNIALKIALAEH-L 273 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--HHCCHHHhCCHHHHHHHHHH-H
Confidence 99999999999999999977555444332 22333345555666677888888 6777 588888887775 4
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH--HHH
Q 013299 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL--SIL 320 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~--~a~ 320 (446)
...|+.++|+..++++++..|++..... .......... .++.+++++.+++++ +.+|+|+ ..+
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~pd~~~~~~---~~l~~~~~l~-----------~~~~~~~~~~~e~~l-k~~p~~~~~~ll 338 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKLGDDRAISL---PLCLPIPRLK-----------PEDNEKLEKLIEKQA-KNVDDKPKCCIN 338 (409)
T ss_pred HHCCChHHHHHHHHHHHhhCCCcccchh---HHHHHhhhcC-----------CCChHHHHHHHHHHH-HhCCCChhHHHH
Confidence 5579999999999999997665431100 0111111111 134678999999999 9999999 889
Q ss_pred HHHHHHHHHcCCHHHHHHHHH--HHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 321 YRLSLEYAEQRKLNAAHYYAK--MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~--~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
..+|.++.++|++++|.++|+ ++++.+|++ +.+..+|.++..+|+.++|..++++++..
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~--~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDA--NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999 688899985 45669999999999999999999999754
No 44
>PLN02789 farnesyltranstransferase
Probab=99.84 E-value=5.5e-19 Score=170.24 Aligned_cols=238 Identities=10% Similarity=0.025 Sum_probs=200.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
.|+..+++..+-.++...+++++|+..+.++|.++|++..+|+..|.++..+| ++++++..+++++ ..+|++..++.
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i--~~npknyqaW~ 110 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA--EDNPKNYQIWH 110 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH--HHCCcchHHhH
Confidence 35556666666667778889999999999999999999999999999999999 6899999999999 89999999998
Q ss_pred HHHHHHhcCCCC--HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 236 IASKICGEYPDL--AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 236 ~~~~~~~~~~~~--~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
..+.++. ..+. .++++.+++++++..|.+ ..+|...|.++... ++++++++++.+++ ++|
T Consensus 111 ~R~~~l~-~l~~~~~~~el~~~~kal~~dpkN-----y~AW~~R~w~l~~l-----------~~~~eeL~~~~~~I-~~d 172 (320)
T PLN02789 111 HRRWLAE-KLGPDAANKELEFTRKILSLDAKN-----YHAWSHRQWVLRTL-----------GGWEDELEYCHQLL-EED 172 (320)
T ss_pred HHHHHHH-HcCchhhHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHh-----------hhHHHHHHHHHHHH-HHC
Confidence 8776643 3454 368899999999965544 67999999988654 56899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhc
Q 013299 314 MRDLSILYRLSLEYAEQ---RKL----NAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQT 382 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~---~~~----~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~ 382 (446)
|+|..+|+++|.++... |.+ ++++.++.+++.++|++. .+|..++.++.. ++++.+|+..+.+++...
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~-SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE-SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc-CHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 99999999999998776 333 578899999999999995 999999999988 566788999999999988
Q ss_pred CCCCcHHHHHHHHHHHHHhC------------------CHHHHHHHHHHHHHH
Q 013299 383 GKWEQGELLRTKAKVQLVQG------------------QLKGAVETYTHLLAA 417 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~g------------------~~~eA~~~~~~~l~l 417 (446)
| .++.++-.++.++.... ..++|...|..+-+.
T Consensus 252 ~--~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 302 (320)
T PLN02789 252 S--NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVA 302 (320)
T ss_pred C--CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhh
Confidence 9 78889999999997643 236677777766433
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=3.6e-17 Score=174.96 Aligned_cols=314 Identities=13% Similarity=0.012 Sum_probs=233.8
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHH
Q 013299 67 ELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLM 146 (446)
Q Consensus 67 ~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~ 146 (446)
...+.+..++|++++|+..|+++++. +|.+...+. .+..+ +...|+.++|+..+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~----~P~~~~av~-dll~l--------------------~~~~G~~~~A~~~~- 91 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKA----GPLQSGQVD-DWLQI--------------------AGWAGRDQEVIDVY- 91 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh----CccchhhHH-HHHHH--------------------HHHcCCcHHHHHHH-
Confidence 34457788999999999999999999 665432222 22222 22347888998876
Q ss_pred HHHHHHHhhcCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC
Q 013299 147 ILLRKVALKRIEWDPSILDHL--SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (446)
Q Consensus 147 ~~~~~~~l~~~p~~~~~~~~l--g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 224 (446)
+.++ .|.+...+..+ |.++...|++++|++.|+++++.+|++++++..++.++...++.++|+..+++++
T Consensus 92 ----eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-- 163 (822)
T PRK14574 92 ----ERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA-- 163 (822)
T ss_pred ----HHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc--
Confidence 3333 46666666666 7799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh--hHHHHHhhchhH--------------------
Q 013299 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME--STANCLLGISLS-------------------- 282 (446)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~--~~a~~~lg~~~~-------------------- 282 (446)
..+|++... ..++.++.. .++..+|+..++++++..|.+.+... ..+...+|..-.
T Consensus 164 ~~dp~~~~~-l~layL~~~-~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 164 ERDPTVQNY-MTLSYLNRA-TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred ccCcchHHH-HHHHHHHHh-cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 899997665 445555444 55666799999999996555443211 111111111000
Q ss_pred ------------------hhhhhh-------------------hc---h-------------------------------
Q 013299 283 ------------------AQSKVA-------------------IT---D------------------------------- 291 (446)
Q Consensus 283 ------------------~~~~~~-------------------~~---~------------------------------- 291 (446)
...++. +. .
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 000000 00 0
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--
Q 013299 292 ---------------FDRATRQAKALQALVSAARSTN------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-- 348 (446)
Q Consensus 292 ---------------~~~~~~~~eAl~~~~~al~~~~------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P-- 348 (446)
+...++.++|+..|++++ .-+ |.+......|-.+|.+++++++|..++++.....|
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~-~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLY-YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh-hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 012356678899999888 655 33444457788889999999999999999988555
Q ss_pred -------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 349 -------------GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 349 -------------~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
+. .++...++.++...|++.+|++.+++.+...| .|..++..+|.++...|.+.+|...++.++
T Consensus 401 ~~~~~~~~~~pn~d~-~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP--~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 401 VGVYGLPGKEPNDDW-IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP--ANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred EeccCCCCCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 22 26777889999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHhh
Q 013299 416 AALQV 420 (446)
Q Consensus 416 ~l~~~ 420 (446)
.+.|.
T Consensus 478 ~l~P~ 482 (822)
T PRK14574 478 SLAPR 482 (822)
T ss_pred hhCCc
Confidence 88754
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=5.1e-17 Score=162.97 Aligned_cols=252 Identities=12% Similarity=0.040 Sum_probs=172.0
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSIL-DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~-~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
+|++++|...+ ..+.+..|++..+. ...+.++...|++++|++.++++++.+|+++.++..++.+|...|++++
T Consensus 131 ~g~~~~A~~~l-----~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 131 RGDEARANQHL-----ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred CCCHHHHHHHH-----HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 45666666654 23344555554332 2447778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCCCCCChH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 214 ALNLLRTLLSGSEDPKCLP--------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~--------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
|+..+.+.. +..+.++. ++..+....... .....+.++.+..|... ...+.++..++..+..
T Consensus 206 a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~l~~~~~~~-----~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~-- 275 (398)
T PRK10747 206 LLDILPSMA--KAHVGDEEHRAMLEQQAWIGLMDQAMAD-----QGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIE-- 275 (398)
T ss_pred HHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHH--
Confidence 887777777 44433322 221111111111 22333444444332210 1124566666666644
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
.|+.++|...+++++ + .|.|+......+.+ ..++.+++++.+++.++.+|+++ ..+..+|.++...
T Consensus 276 ---------~g~~~~A~~~L~~~l-~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~-~l~l~lgrl~~~~ 341 (398)
T PRK10747 276 ---------CDDHDTAQQIILDGL-K-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP-LLWSTLGQLLMKH 341 (398)
T ss_pred ---------CCCHHHHHHHHHHHH-h-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHC
Confidence 356788888888888 7 55566555544444 34888889999999889899884 8888889999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
|++++|..+|+++++..| ++ ..+..++.++.++|+.++|.++|++++.+.
T Consensus 342 ~~~~~A~~~le~al~~~P--~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 342 GEWQEASLAFRAALKQRP--DA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhcCC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999998888 44 445678888889999999999999888876
No 47
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-17 Score=158.11 Aligned_cols=360 Identities=15% Similarity=0.085 Sum_probs=242.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.+.-+.++.||...|+-+.|++...++... .. .......++..+..-|+-.++.-.|..+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t------------~r--------~p~inlMla~l~~~g~r~~~~vl~ykev 156 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPT------------LR--------SPRINLMLARLQHHGSRHKEAVLAYKEV 156 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCcc------------cc--------chhHHHHHHHHHhccccccHHHHhhhHH
Confidence 455677889999999999998875443321 10 0122233445666777777888888888
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhh-hcCC---------CCCCccccc----cCccccCCCcHHHHHHHHHHHHHHHHhh
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLY-CGGE---------TCPPNLRSQ----MGSSFVPRNNIEEAILLLMILLRKVALK 155 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~-~~~~---------~~~~~~~~~----~~~~~~~~~~~~eA~~~l~~~~~~~~l~ 155 (446)
+.. -|--.+.+ .+.+-+. .+.+ ..+++..+. ...++.-.+....|+.+..- -....
T Consensus 157 vre----cp~aL~~i---~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~---le~~~ 226 (564)
T KOG1174|consen 157 IRE----CPMALQVI---EALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLM---LHDNT 226 (564)
T ss_pred HHh----cchHHHHH---HHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHH---HHhhc
Confidence 765 22111111 1100000 0000 012221110 00011111112222222110 01123
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH----------------------------------HHHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE----------------------------------RYHIL 201 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~----------------------------------~~~~l 201 (446)
.-|+|...+-.+|.++...|++.+|+-.|+++..+||.+.. -|+--
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 34555555555566666666666666666666655555554 45556
Q ss_pred HHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchh
Q 013299 202 ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISL 281 (446)
Q Consensus 202 g~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 281 (446)
|..++..+++..|+..-+++| ..+|.+..+++..|.++ ...++.++|+-.|+.|+.+.|.+ -..|--|-.+|
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I--~~~~r~~~alilKG~lL-~~~~R~~~A~IaFR~Aq~Lap~r-----L~~Y~GL~hsY 378 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCI--DSEPRNHEALILKGRLL-IALERHTQAVIAFRTAQMLAPYR-----LEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHh--ccCcccchHHHhccHHH-HhccchHHHHHHHHHHHhcchhh-----HHHHHHHHHHH
Confidence 666777778889999999999 99999999999888774 55899999999999999854433 23333344445
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013299 282 SAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS-LEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMA 359 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg-~~~~~-~~~~~~A~~~~~~al~l~P~~~~~~~~~la 359 (446)
.. .+++.||...-+.++ ..-|+++.++--+| .++.. -.--++|.+.++++++++|+. ..+...+|
T Consensus 379 LA-----------~~~~kEA~~~An~~~-~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~A 445 (564)
T KOG1174|consen 379 LA-----------QKRFKEANALANWTI-RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIA 445 (564)
T ss_pred Hh-----------hchHHHHHHHHHHHH-HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-HHHHHHHH
Confidence 43 356899999999999 99999999999997 55553 445688999999999999999 69999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 360 RILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 360 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.++...|++++++..+++.+...| +-..+..+|.++...+.+++|++.|..+|.++|++..
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~---D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFP---DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhcc---ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999999999 4467899999999999999999999999999987543
No 48
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=3.2e-17 Score=165.65 Aligned_cols=264 Identities=19% Similarity=0.093 Sum_probs=208.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~ 229 (446)
+.+++.+|.|+.+.++++.-+..+++.+.|.+..+++++. .-+++.+|..|+.++-..+++.+|+...+-++ ...|+
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al--~E~~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL--EEFGD 545 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HHhhh
Confidence 5677889999999999999999999999999999999999 66778999999999999999999999999999 88898
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-------------------------hhhhHHHHHhhchhHhh
Q 013299 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD-------------------------QMESTANCLLGISLSAQ 284 (446)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-------------------------~~~~~a~~~lg~~~~~~ 284 (446)
|.........+-. ..++.++|+..+...+.....-.. .-........+.+- .+
T Consensus 546 N~~l~~~~~~i~~-~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~ 623 (799)
T KOG4162|consen 546 NHVLMDGKIHIEL-TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQ 623 (799)
T ss_pred hhhhchhhhhhhh-hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hh
Confidence 7554433222222 245666666666655544321000 00000000011110 00
Q ss_pred hhhhh-----------------------------chHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 013299 285 SKVAI-----------------------------TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA 335 (446)
Q Consensus 285 ~~~~~-----------------------------~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~ 335 (446)
..... ..+.+.+..++|.-++.++- .++|-.+.+++..|.++...|..++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~-~~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS-KIDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-hcchhhHHHHHHhhHHHHHHHhhHH
Confidence 00000 00123456688999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET--ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
|.+.|..|+.+||++ +.+...+|.++...|+-.-|.. .+..+++.+| .+.++|+.+|.++..+|+.++|.++|..
T Consensus 703 A~~af~~Al~ldP~h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp--~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 703 AKEAFLVALALDPDH-VPSMTALAELLLELGSPRLAEKRSLLSDALRLDP--LNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999999999999 5999999999999999888888 9999999999 9999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 013299 414 LLAALQVQT 422 (446)
Q Consensus 414 ~l~l~~~~~ 422 (446)
++++.+..+
T Consensus 780 a~qLe~S~P 788 (799)
T KOG4162|consen 780 ALQLEESNP 788 (799)
T ss_pred HHhhccCCC
Confidence 999986543
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=7.7e-17 Score=165.34 Aligned_cols=353 Identities=15% Similarity=0.133 Sum_probs=250.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+..+.-.|..++.-|++++|++.|..+|+. +|.+. .++..||.+|.++|+.+.+...+-.|
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~-----------~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNP-----------IAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------Cccch-----------hhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 345566777888889999999999999997 45442 47889999999999999999998888
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
--+ +|.+. .+...++.. ...+|++.+|+-++ ..+++.+|.+-........
T Consensus 200 AHL----~p~d~-e~W~~ladl--------------------s~~~~~i~qA~~cy-----~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 200 AHL----NPKDY-ELWKRLADL--------------------SEQLGNINQARYCY-----SRAIQANPSNWELIYERSS 249 (895)
T ss_pred Hhc----CCCCh-HHHHHHHHH--------------------HHhcccHHHHHHHH-----HHHHhcCCcchHHHHHHHH
Confidence 777 44443 234555543 23578899998875 6778999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHh
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRK-----ERYHILALCYYGAGEDLVALNLLRTLLSGSEDP--KCLPALLIASKICG 242 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P--~~~~a~~~~~~~~~ 242 (446)
.+.+.|+...|...|.+++..+|... +.-...+..+...++-+.|++.++.++ ...- ...+-+..++.+++
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~--s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL--SKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hhccccccccHHHHHHHHHH
Confidence 99999999999999999999999221 122234666777787799999999999 4111 11112222334433
Q ss_pred cCCCCHHHHHHHHHHHHH----------------------HcC-CCcchhhhH-HHHHhhchhHhhhhhhh---------
Q 013299 243 EYPDLAEEGATFASRALE----------------------CLG-DGCDQMEST-ANCLLGISLSAQSKVAI--------- 289 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~----------------------~~~-~~~~~~~~~-a~~~lg~~~~~~~~~~~--------- 289 (446)
. ...++.|.......-. ..+ ++...+.-. .+..+|.+..+......
T Consensus 328 ~-~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~ 406 (895)
T KOG2076|consen 328 K-NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED 406 (895)
T ss_pred H-hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh
Confidence 3 3456666555544333 000 000011111 13333333222221100
Q ss_pred ----c-----------hHHHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 290 ----T-----------DFDRATRQAKALQALVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 290 ----~-----------~~~~~~~~~eAl~~~~~al~~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
. -+..-|++.+|+..|..++ ...+. +..+|+.+|.+|..+|.+++|++.|.+++.++|++ ..
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~-~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~-~D 484 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT-NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN-LD 484 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh-cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc-hh
Confidence 0 0134578999999999999 66654 46799999999999999999999999999999999 59
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCC-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTGK-------WEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-------~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
+...|+.++..+|+.++|+..+++...-+|+ +....+.++++.++...|+.++=+..-..++.
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999986622210 12456778999999999999995555554444
No 50
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.81 E-value=1.8e-17 Score=153.31 Aligned_cols=305 Identities=13% Similarity=0.105 Sum_probs=246.1
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHH
Q 013299 67 ELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLM 146 (446)
Q Consensus 67 ~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~ 146 (446)
..+|.-++..|++.+|+..|..+++. ||.+..++.++-..+ ...|+-.-|+.-+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~y---------------------LAmGksk~al~Dl- 95 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVY---------------------LAMGKSKAALQDL- 95 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHH---------------------hhhcCCccchhhH-
Confidence 34678888999999999999999999 998877654443332 2233333455544
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc---HHHHHHHH------------HHHHHCCCh
Q 013299 147 ILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILA------------LCYYGAGED 211 (446)
Q Consensus 147 ~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg------------~~~~~~g~~ 211 (446)
..+++.-|+...+....|.++.++|++++|++.|+.+++.+|.+ .+++..|+ ..++..|+.
T Consensus 96 ----~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 96 ----SRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred ----HHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 56788889999999999999999999999999999999999954 34444443 345567999
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhch
Q 013299 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (446)
Q Consensus 212 ~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~ 291 (446)
..|+....+.| .+.|=+.+.+.+.+. |+...|....||.-++.+-++..++ ..+++-+...+...
T Consensus 172 ~~ai~~i~~ll--Ei~~Wda~l~~~Rak-c~i~~~e~k~AI~Dlk~askLs~Dn-----Te~~ykis~L~Y~v------- 236 (504)
T KOG0624|consen 172 QNAIEMITHLL--EIQPWDASLRQARAK-CYIAEGEPKKAIHDLKQASKLSQDN-----TEGHYKISQLLYTV------- 236 (504)
T ss_pred hhHHHHHHHHH--hcCcchhHHHHHHHH-HHHhcCcHHHHHHHHHHHHhccccc-----hHHHHHHHHHHHhh-------
Confidence 99999999999 899999888776665 5666799999999999888854333 56777777777654
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH----HH
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYR------------LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK----GW 355 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~------------lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~----~~ 355 (446)
|+.+.++...++++ ++||++-..+-. -+....+.+++-+++...++.++-+|.-+ . .+
T Consensus 237 ----gd~~~sL~~iRECL-KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~-~ir~~~~ 310 (504)
T KOG0624|consen 237 ----GDAENSLKEIRECL-KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET-MIRYNGF 310 (504)
T ss_pred ----hhHHHHHHHHHHHH-ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc-ceeeeee
Confidence 56899999999999 999998765421 12334567899999999999999999852 3 34
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
..+-.++..-|++.+|+..+.++|..+| ++..++--+|.+++....||+|+..|+++++.++.+..+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d~--~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDIDP--DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 4567788888999999999999999999 899999999999999999999999999999998875543
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=8.1e-18 Score=148.37 Aligned_cols=203 Identities=18% Similarity=0.044 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (446)
.++..||..|...|++..|...+++||+.||++..+|..++.+|...|..+-|.+.|++|+ .++|++..++.+.|..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl--sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL--SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH--hcCCCccchhhhhhHHH
Confidence 4667899999999999999999999999999999999999999999999999999999999 99999999998888877
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 013299 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY 321 (446)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~ 321 (446)
+.+ |++++|..+|++|+. .|.-. ..+..+-++|.|-.+. |+.+.|.+.|++++ +++|+++.+..
T Consensus 114 C~q-g~~~eA~q~F~~Al~-~P~Y~--~~s~t~eN~G~Cal~~-----------gq~~~A~~~l~raL-~~dp~~~~~~l 177 (250)
T COG3063 114 CAQ-GRPEEAMQQFERALA-DPAYG--EPSDTLENLGLCALKA-----------GQFDQAEEYLKRAL-ELDPQFPPALL 177 (250)
T ss_pred HhC-CChHHHHHHHHHHHh-CCCCC--CcchhhhhhHHHHhhc-----------CCchhHHHHHHHHH-HhCcCCChHHH
Confidence 764 589999999998888 43321 1244555666655433 34555666666666 66666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.++..+++.|++-.|..++++-..--+-. ++.+.....|-...|+-+.|-.+=.+..+.+|
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~-A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGGAQ-AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhccccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 66666666666666666665555444433 35555455555555665555555555555555
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=1.6e-16 Score=159.29 Aligned_cols=242 Identities=14% Similarity=0.039 Sum_probs=131.1
Q ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHH-HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 160 DPSILDHL-SFAFSIAGDLSSLATQIEELLPGIINRKERY-HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 160 ~~~~~~~l-g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
+|..++.+ +.+..+.|+++.|.+.|+++.+.+|++..+. ...+.++...|++++|+..+++++ +.+|+++.++..+
T Consensus 116 ~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~--~~~P~~~~al~ll 193 (398)
T PRK10747 116 QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLL--EVAPRHPEVLRLA 193 (398)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHH
Confidence 34444444 3333666666666666666666666654332 233666666666666666666666 6666666666655
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQME---STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+.++.. .|++++|+..+.+..+...-+++... ..++..+..... .....+...+..+... +..|
T Consensus 194 ~~~~~~-~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~-----------~~~~~~~l~~~w~~lp-~~~~ 260 (398)
T PRK10747 194 EQAYIR-TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM-----------ADQGSEGLKRWWKNQS-RKTR 260 (398)
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-----------HhcCHHHHHHHHHhCC-HHHh
Confidence 554433 46666666666666553222111110 112221111000 0011223333344444 4445
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 394 (446)
+++.++..+|..+...|+.++|...++++++. |.++ .....++.+ ..++++++++.+++.++..| +++..++.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~-~l~~l~~~l--~~~~~~~al~~~e~~lk~~P--~~~~l~l~l 334 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDE-RLVLLIPRL--KTNNPEQLEKVLRQQIKQHG--DTPLLWSTL 334 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH-HHHHHHhhc--cCCChHHHHHHHHHHHhhCC--CCHHHHHHH
Confidence 56666666666666666666666666666663 3332 444434433 23666666666666666666 666666666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 395 AKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 395 a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
|.++...|++++|.+.|++++++.|+..
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 6666666666666666666666666543
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=158.70 Aligned_cols=214 Identities=17% Similarity=0.098 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
++.+..|..+|.+.++++.|+..|.+.++.-|.+.......+.++..++++++|++.|+.++ +.+|.|+++....+.-
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl--k~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL--KLHPINVEAIACIAVG 333 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH--hcCCccceeeeeeeec
Confidence 34455677788888999999999999999999999999999999999999999999999999 8999999876544433
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC---CH
Q 013299 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR---DL 317 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~---~~ 317 (446)
++ -.++.+-|+.+|+|.++.--.+ +..+.++|.|... .++++-++.+|++|+ ....+ -+
T Consensus 334 yf-Y~~~PE~AlryYRRiLqmG~~s-----peLf~NigLCC~y-----------aqQ~D~~L~sf~RAl-stat~~~~aa 395 (478)
T KOG1129|consen 334 YF-YDNNPEMALRYYRRILQMGAQS-----PELFCNIGLCCLY-----------AQQIDLVLPSFQRAL-STATQPGQAA 395 (478)
T ss_pred cc-cCCChHHHHHHHHHHHHhcCCC-----hHHHhhHHHHHHh-----------hcchhhhHHHHHHHH-hhccCcchhh
Confidence 33 3578889999999998842222 5678888887644 246788888998888 76542 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
++|||+|.+....||+.-|..+|+-|+.-||++ .+++++||.+-+..|+.++|..++..|-...| +-.+..++++.+
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G~i~~Arsll~~A~s~~P--~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSGDILGARSLLNAAKSVMP--DMAEVTTNLQFM 472 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc--cccccccceeEE
Confidence 789999999888999999999999999999998 59999999999999999999999999988888 777777776544
No 54
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=1.5e-17 Score=160.33 Aligned_cols=227 Identities=12% Similarity=-0.004 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCCh--HHH
Q 013299 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGAGED--LVA 214 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~eA 214 (446)
.++|+.++ ..++..+|.+..+|+..|.++...| ++++++..+++++..+|++..+|++.+.++...|+. +++
T Consensus 53 serAL~lt-----~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 53 SPRALDLT-----ADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CHHHHHHH-----HHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 44565543 4566777888888888888888777 567888888888888888888888888887777764 567
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHH
Q 013299 215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDR 294 (446)
Q Consensus 215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~ 294 (446)
+..+++++ ..+|+|..++...+.++ ...|++++++.+++++|+..+.+ ..+|+.+|.++...+.... .
T Consensus 128 l~~~~kal--~~dpkNy~AW~~R~w~l-~~l~~~~eeL~~~~~~I~~d~~N-----~sAW~~R~~vl~~~~~l~~----~ 195 (320)
T PLN02789 128 LEFTRKIL--SLDAKNYHAWSHRQWVL-RTLGGWEDELEYCHQLLEEDVRN-----NSAWNQRYFVITRSPLLGG----L 195 (320)
T ss_pred HHHHHHHH--HhCcccHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHCCCc-----hhHHHHHHHHHHhcccccc----c
Confidence 77788888 78888888887776554 44677888888888888854433 4577777776654321000 0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc----
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK---- 366 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g---- 366 (446)
....++++.+..+++ .++|+|..+|++++.++.. .++..+|+..+.+++..+|.+ ..++..|+.++....
T Consensus 196 ~~~~e~el~y~~~aI-~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAI-LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-VFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHH-HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-HHHHHHHHHHHHhhhccch
Confidence 012467888999999 9999999999999999987 456678999999999999998 599999999997632
Q ss_pred --------------CHHHHHHHHHHHHhhcC
Q 013299 367 --------------RYEDAETILNAALDQTG 383 (446)
Q Consensus 367 --------------~~~eA~~~~~~al~~~p 383 (446)
..++|...|+..-+.+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 34668888877755566
No 55
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.1e-17 Score=160.08 Aligned_cols=314 Identities=12% Similarity=0.023 Sum_probs=223.3
Q ss_pred HHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013299 70 PELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (446)
Q Consensus 70 ~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~ 149 (446)
|+..++.|+++.|+.+|..+|.+ +|.|..-. .+ .-..|...+++++|+.--
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l----~p~nhvly-Sn--------------------rsaa~a~~~~~~~al~da---- 59 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIML----SPTNHVLY-SN--------------------RSAAYASLGSYEKALKDA---- 59 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHcc----CCCccchh-cc--------------------hHHHHHHHhhHHHHHHHH----
Confidence 46778999999999999999999 66552211 11 112345577888887653
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC-------------------
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE------------------- 210 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------------- 210 (446)
......+|+=+.+|..+|.++...|+|++|+..|.+.|+.+|+|......|+.++...-.
T Consensus 60 -~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 60 -TKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL 138 (539)
T ss_pred -HHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence 445678899999999999999999999999999999999999999999998887722200
Q ss_pred -----hHHHHHHHHHHh---------------------------------------cCCCCCC------------ChH--
Q 013299 211 -----DLVALNLLRTLL---------------------------------------SGSEDPK------------CLP-- 232 (446)
Q Consensus 211 -----~~eA~~~~~~al---------------------------------------~~~~~P~------------~~~-- 232 (446)
.+.+.....+.+ ....+|. ...
T Consensus 139 t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 139 TNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred hhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 011111111111 0011120 000
Q ss_pred -------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc---------------
Q 013299 233 -------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT--------------- 290 (446)
Q Consensus 233 -------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~--------------- 290 (446)
..-.+|...+. ..+++.|+.+|.+++++. .+. .-+.+.+.+|...+.+...
T Consensus 219 ~~k~~a~~ek~lgnaayk-kk~f~~a~q~y~~a~el~-~~i-----t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r 291 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYK-KKDFETAIQHYAKALELA-TDI-----TYLNNIAAVYLERGKYAECIELCEKAVEVGRELR 291 (539)
T ss_pred HHHHhhhHHHHHHHHHHH-hhhHHHHHHHHHHHHhHh-hhh-----HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH
Confidence 12235555555 468889999999999965 432 2334444444444332211
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 291 ---------------DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 291 ---------------~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
-+.+.+.++.|+.+|++++ .-.-+ ..++......++++........++|+- +.--
T Consensus 292 ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL-te~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~ 361 (539)
T KOG0548|consen 292 ADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL-TEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-AEEE 361 (539)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh-hhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-HHHH
Confidence 0123466777777777777 54433 445555566777777777777778876 4666
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHH
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVY 435 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 435 (446)
...|.-++..|+|.+|+..|.+||..+| +++.+|-++|.++.++|.+.+|+..++.++++ +|.|...|
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr~P--~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL----------~p~~~kgy 429 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKRDP--EDARLYSNRAACYLKLGEYPEALKDAKKCIEL----------DPNFIKAY 429 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------CchHHHHH
Confidence 6779999999999999999999999999 99999999999999999999999999999999 58999999
Q ss_pred hhhhccc
Q 013299 436 FMRKRVS 442 (446)
Q Consensus 436 ~~~~~~~ 442 (446)
+.++.++
T Consensus 430 ~RKg~al 436 (539)
T KOG0548|consen 430 LRKGAAL 436 (539)
T ss_pred HHHHHHH
Confidence 9887654
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.8e-16 Score=148.62 Aligned_cols=307 Identities=12% Similarity=0.025 Sum_probs=234.7
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
.++.+..-.|+.-.|..++-.+-.. +. .|.+ ..-+..+|.++...|++++|+..|.++..+
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~--~~----lr~N-----------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-- 261 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDN--TT----LRCN-----------EHLMMALGKCLYYNGDYFQAEDIFSSTLCA-- 261 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhh--cc----CCcc-----------HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--
Confidence 4556666666666665554332111 11 2322 234556778999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 013299 95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA 174 (446)
Q Consensus 95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~ 174 (446)
||.+... .-..|-++- ..|+++.--.+ ....+.......+-|+--|..+...
T Consensus 262 --dpy~i~~-MD~Ya~LL~--------------------~eg~~e~~~~L-----~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 262 --NPDNVEA-MDLYAVLLG--------------------QEGGCEQDSAL-----MDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred --Chhhhhh-HHHHHHHHH--------------------hccCHhhHHHH-----HHHHHhhhhcchhhhhhhhhhhhhh
Confidence 7765332 112222211 13334332221 1223344444556677778888899
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
+++..|+..-+++|+.+|.+.+++...|.++...||.++|+-.|+.|+ .+.|-....|-.+-- +|.-.|++.||...
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq--~Lap~rL~~Y~GL~h-sYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ--MLAPYRLEIYRGLFH-SYLAQKRFKEANAL 390 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH--hcchhhHHHHHHHHH-HHHhhchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999887765443 44457899999999
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhh-chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013299 255 ASRALECLGDGCDQMESTANCLLG-ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~ 333 (446)
.+.++...+.+ +.++-.+| .+..... .-.++|.+.+++++ .++|....+...++.++...|++
T Consensus 391 An~~~~~~~~s-----A~~LtL~g~~V~~~dp----------~~rEKAKkf~ek~L-~~~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 391 ANWTIRLFQNS-----ARSLTLFGTLVLFPDP----------RMREKAKKFAEKSL-KINPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred HHHHHHHhhcc-----hhhhhhhcceeeccCc----------hhHHHHHHHHHhhh-ccCCccHHHHHHHHHHHHhhCcc
Confidence 99999977665 56777777 3333221 23589999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
++++..+++.+...||. ..+..||.++...+.+++|+.+|..|++++| .+-...
T Consensus 455 ~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP--~~~~sl 508 (564)
T KOG1174|consen 455 KDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALRQDP--KSKRTL 508 (564)
T ss_pred chHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc--cchHHH
Confidence 99999999999999995 7999999999999999999999999999999 554433
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=2.4e-17 Score=151.38 Aligned_cols=193 Identities=15% Similarity=0.057 Sum_probs=165.8
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...|++++|+..+ +.++...|+++.++..+|.++...|++++|++.|++++..+|+++.+++++|.++...|+
T Consensus 40 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 40 GYLEQGDLEVAKENL-----DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHCCCHHHHHHHH-----HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 455678899999886 455677899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 211 DLVALNLLRTLLSGSEDP--KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P--~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
+++|+..|++++ ...+ ... ..+..+|.++..
T Consensus 115 ~~~A~~~~~~~~--~~~~~~~~~----------------------------------------~~~~~l~~~~~~----- 147 (234)
T TIGR02521 115 YEQAMQQFEQAI--EDPLYPQPA----------------------------------------RSLENAGLCALK----- 147 (234)
T ss_pred HHHHHHHHHHHH--hccccccch----------------------------------------HHHHHHHHHHHH-----
Confidence 999999999999 5321 111 123344555533
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH
Q 013299 289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~ 368 (446)
.|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..+++++.+.|+++ ..+..++.++...|+.
T Consensus 148 ------~g~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 148 ------AGDFDKAEKYLTRAL-QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA-ESLWLGIRIARALGDV 219 (234)
T ss_pred ------cCCHHHHHHHHHHHH-HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhH
Confidence 356789999999999 99999999999999999999999999999999999988884 8888999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 013299 369 EDAETILNAALDQTG 383 (446)
Q Consensus 369 ~eA~~~~~~al~~~p 383 (446)
++|..+.+.+....|
T Consensus 220 ~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 220 AAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhhCc
Confidence 999999888776654
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=6.1e-18 Score=155.44 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=211.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY 244 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~ 244 (446)
..+|.+|.+.|.+.+|...++.+++..| .++.+..|+.+|.+..+.+.|+..|.+.+ ...|.++..+...+.+. +.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gl--d~fP~~VT~l~g~ARi~-ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGL--DSFPFDVTYLLGQARIH-EA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhh--hcCCchhhhhhhhHHHH-HH
Confidence 5899999999999999999999999765 78999999999999999999999999999 89999998888788774 55
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
+++.++|+++|+++++..+.+ ..+...+|..|+. .++.+-|+.+|++.+ +..-.+|+.+.|+|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~n-----vEaiAcia~~yfY-----------~~~PE~AlryYRRiL-qmG~~speLf~Nig 365 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPIN-----VEAIACIAVGYFY-----------DNNPEMALRYYRRIL-QMGAQSPELFCNIG 365 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCcc-----ceeeeeeeecccc-----------CCChHHHHHHHHHHH-HhcCCChHHHhhHH
Confidence 789999999999999965544 3344455555543 246899999999999 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 325 LEYAEQRKLNAAHYYAKMLLKLE--GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
.++.-.+++|-++..|++|+..- |+..+++|+++|.+....|++.-|-.+|+-++.-+| ++.+++.++|.+..+.|
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--QHGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc--chHHHHHhHHHHHhhcC
Confidence 99999999999999999998864 555568999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhhh
Q 013299 403 QLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++++|...+..+-+..|+-+++
T Consensus 444 ~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred chHHHHHHHHHhhhhCcccccc
Confidence 9999999999999998765543
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.9e-17 Score=153.83 Aligned_cols=267 Identities=15% Similarity=0.099 Sum_probs=222.9
Q ss_pred CccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC
Q 013299 129 GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA 208 (446)
Q Consensus 129 ~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 208 (446)
++.|..+.+|.+|+..+ ..++...|+++..|.+.+..+...|++++|.-..++.+.++|+.+..+...+.++...
T Consensus 56 gn~~yk~k~Y~nal~~y-----t~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNY-----TFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred cchHHHHhhHHHHHHHH-----HHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 45677778889998875 5567889999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHH--------hc--CCCC------CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhH
Q 013299 209 GEDLVALNLLRTL--------LS--GSED------PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMEST 272 (446)
Q Consensus 209 g~~~eA~~~~~~a--------l~--~~~~------P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~ 272 (446)
+...+|...|+.. +. ..+- |....+.+ +..-|+...+++++|....-.+++..+.+ ..
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~-lka~cl~~~~~~~~a~~ea~~ilkld~~n-----~~ 204 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKL-LKAECLAFLGDYDEAQSEAIDILKLDATN-----AE 204 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHH-hhhhhhhhcccchhHHHHHHHHHhcccch-----hH
Confidence 9888887655421 00 0112 22222333 44456777899999999998888854333 67
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------------ILYRLSLEYAEQRKLNAAHYYA 340 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------------a~~~lg~~~~~~~~~~~A~~~~ 340 (446)
+.+..|.|+... ...+.|+..|++++ .++|++.. .+-.-|.-.++.|++..|.+.|
T Consensus 205 al~vrg~~~yy~-----------~~~~ka~~hf~qal-~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 205 ALYVRGLCLYYN-----------DNADKAINHFQQAL-RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred HHHhcccccccc-----------cchHHHHHHHhhhh-ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 888999988654 46899999999999 99999764 3456688889999999999999
Q ss_pred HHHHhhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 341 KMLLKLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 341 ~~al~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..||.++|++- +..|+++|.+...+||..+|+..++.|++++| ....++..+|.++...+++++|++.|++++++
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~--syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS--SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999862 35788999999999999999999999999999 89999999999999999999999999999988
Q ss_pred Hhh
Q 013299 418 LQV 420 (446)
Q Consensus 418 ~~~ 420 (446)
.+.
T Consensus 351 ~~s 353 (486)
T KOG0550|consen 351 EKD 353 (486)
T ss_pred ccc
Confidence 654
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=1.2e-15 Score=153.68 Aligned_cols=253 Identities=18% Similarity=0.137 Sum_probs=178.9
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
...+.|..|..+|+||+|+..|+.+|+...+..-...| .+...+..+|.+|..++++++|+.+|.++|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl-----------~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHL-----------VVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCH-----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34448888999999999999999999987664422222 2456667789999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (446)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (446)
+ . . .-+ | ..+|.-..++.+||.+|
T Consensus 270 i----~-e------~~~---------------------------G------------------~~h~~va~~l~nLa~ly 293 (508)
T KOG1840|consen 270 I----R-E------EVF---------------------------G------------------EDHPAVAATLNNLAVLY 293 (508)
T ss_pred H----H-H------Hhc---------------------------C------------------CCCHHHHHHHHHHHHHH
Confidence 7 1 0 000 0 11233445677888888
Q ss_pred HhcCCHHHHHHHHHhhCCCC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc
Q 013299 172 SIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (446)
...|++++|..++++|+.+- |.=...+.+++.++..+
T Consensus 294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~----------------------------------- 338 (508)
T KOG1840|consen 294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM----------------------------------- 338 (508)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-----------------------------------
Confidence 88899888888888776541 11122333344444444
Q ss_pred CCCCHHHHHHHHHHHHHHcC---CCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-------
Q 013299 244 YPDLAEEGATFASRALECLG---DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN------- 313 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~------- 313 (446)
+++++|+.++++++++.. +.+....+..+.++|.+|..+ |++++|.+.|++|+ .+.
T Consensus 339 --~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~-----------gk~~ea~~~~k~ai-~~~~~~~~~~ 404 (508)
T KOG1840|consen 339 --NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM-----------GKYKEAEELYKKAI-QILRELLGKK 404 (508)
T ss_pred --cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh-----------cchhHHHHHHHHHH-HHHHhcccCc
Confidence 455555555555554432 111224567788999999776 56899999999999 653
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 314 -MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE----GGSN--LKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 314 -P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~----P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
+.....+++||..+.+++++++|...|.++..+. |+++ ...+.+||.+|..+|+|++|+++.++++.
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4445678899999999999999999999987764 4432 24677888888888888888888888873
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.73 E-value=5.7e-16 Score=144.23 Aligned_cols=199 Identities=15% Similarity=0.017 Sum_probs=140.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
..+..++.++.+|..+...|++++|+..|++++..+|+++ .+|+.+|.++...|++++|+..|++++ +.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l--~~~p~~~~ 105 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI--RLHPNHPD 105 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCc
Confidence 3466788999999999999999999999999999999876 688999999999999999999999999 88998876
Q ss_pred ---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 233 ---ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 233 ---a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
+++..|.+++... +.++ ...+++++|+..|++++
T Consensus 106 ~~~a~~~~g~~~~~~~--------------------------------~~~~-----------~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQI--------------------------------DRVD-----------RDQTAAREAFEAFQELI 142 (235)
T ss_pred hHHHHHHHHHHHHHhc--------------------------------cccc-----------CCHHHHHHHHHHHHHHH
Confidence 3444444332210 0011 11356788888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC-CCcH
Q 013299 310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK-WEQG 388 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~ 388 (446)
..+|++..++..+..+... .. .. ......+|.++..+|++.+|+..+++++...|+ +...
T Consensus 143 -~~~p~~~~~~~a~~~~~~~----~~-------------~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (235)
T TIGR03302 143 -RRYPNSEYAPDAKKRMDYL----RN-------------RL-AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATE 203 (235)
T ss_pred -HHCCCChhHHHHHHHHHHH----HH-------------HH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchH
Confidence 8888887655333222110 00 01 133445777777888888888888888877662 1235
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
.+++.+|.++...|++++|..+++.+..-.
T Consensus 204 ~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 204 EALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777888888888888888887777665443
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=9.2e-16 Score=135.45 Aligned_cols=196 Identities=16% Similarity=-0.000 Sum_probs=165.1
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 209 (446)
..|..+|++..|...+ +.+++.+|++..+|..++.+|...|+.+.|-+.|++|++++|++.++++|.|..+..+|
T Consensus 43 l~YL~~gd~~~A~~nl-----ekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 43 LGYLQQGDYAQAKKNL-----EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHCCCHHHHHHHH-----HHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 3466788999998776 66789999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
++++|...|++|+ .+|..+ ..+.+ .++|..+.|+++.|..+|+|+++..|..+. +...+......
T Consensus 118 ~~~eA~q~F~~Al---~~P~Y~~~s~t~eN-~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-----~~l~~a~~~~~--- 185 (250)
T COG3063 118 RPEEAMQQFERAL---ADPAYGEPSDTLEN-LGLCALKAGQFDQAEEYLKRALELDPQFPP-----ALLELARLHYK--- 185 (250)
T ss_pred ChHHHHHHHHHHH---hCCCCCCcchhhhh-hHHHHhhcCCchhHHHHHHHHHHhCcCCCh-----HHHHHHHHHHh---
Confidence 9999999999999 577643 34444 567777889999999999999997665543 23333333322
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
.+++..|...+++.. ..-+-.++.+.-...+-...|+-+.|-.+=.+..++.|...
T Consensus 186 --------~~~y~~Ar~~~~~~~-~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 186 --------AGDYAPARLYLERYQ-QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred --------cccchHHHHHHHHHH-hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 367899999999999 88888888887777777889999999999999999999973
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.72 E-value=1.1e-15 Score=153.93 Aligned_cols=251 Identities=20% Similarity=0.122 Sum_probs=195.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC---
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSG--- 224 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--- 224 (446)
..|.-..+..+++..|..+|++++|+..|++++.+ .|.-......+|.+|..++++.+|+..|++|++.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34666667778999999999999999999999998 6766666777999999999999999999999941
Q ss_pred CCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHH
Q 013299 225 SEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGD---GCDQMESTANCLLGISLSAQSKVAITDFDRATRQ 298 (446)
Q Consensus 225 ~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 298 (446)
..-++++ .++..++..+ ...|++++|..++++|+++... .........+..++.++..+ +++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly-~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~-----------~~~ 341 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLY-YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM-----------NEY 341 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-----------cch
Confidence 1124444 3455566554 5579999999999999987532 11223345566666666543 567
Q ss_pred HHHHHHHHHHHHhhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHH
Q 013299 299 AKALQALVSAARSTN-----M---RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE--------GGSNLKGWLLMARIL 362 (446)
Q Consensus 299 ~eAl~~~~~al~~~~-----P---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--------P~~~~~~~~~la~~~ 362 (446)
++|+.++++++ ++- + .-+....+||.+|..+|++++|+++|++|+.+. +.. ...++++|..+
T Consensus 342 Eea~~l~q~al-~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~-~~~l~~la~~~ 419 (508)
T KOG1840|consen 342 EEAKKLLQKAL-KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV-GKPLNQLAEAY 419 (508)
T ss_pred hHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh-hHHHHHHHHHH
Confidence 88888888777 642 3 336688899999999999999999999999976 222 25678899999
Q ss_pred HHccCHHHHHHHHHHHHhhc----CCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 363 SAQKRYEDAETILNAALDQT----GKW-EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~----p~~-~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
...+++.+|...|.+++.+. |+. +-...+.++|.+|..+|++++|++.-.+++..+..
T Consensus 420 ~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 420 EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999887653 310 34556789999999999999999999999987755
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=4.4e-14 Score=139.69 Aligned_cols=207 Identities=10% Similarity=-0.098 Sum_probs=152.7
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
+..++..+|..+...|+.++|...+.++.+..+ .... ........+.++...|++++|+..+++
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--------~~e~~~~~a~~~~~~g~~~~A~~~~~~ 68 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALA--------ARAT--------ERERAHVEALSAWIAGDLPKALALLEQ 68 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc--------cCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999999999999999999888642 1111 112344556788999999999999999
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013299 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS 168 (446)
Q Consensus 89 al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg 168 (446)
+++. .|.+...+.. +..+...+ ...+....+...+ .......|....++..+|
T Consensus 69 ~l~~----~P~~~~a~~~--~~~~~~~~----------------~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 69 LLDD----YPRDLLALKL--HLGAFGLG----------------DFSGMRDHVARVL-----PLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHH----CCCcHHHHHH--hHHHHHhc----------------ccccCchhHHHHH-----hccCcCCCCcHHHHHHHH
Confidence 9998 5544322111 11111111 1122333333322 123455677777888999
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHhcC
Q 013299 169 FAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALLIASKICGEY 244 (446)
Q Consensus 169 ~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~----a~~~~~~~~~~~ 244 (446)
.++...|++++|++.++++++++|+++.++..+|.+++..|++++|+..+++++ ...|.++. .+..++.+ +..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l--~~~~~~~~~~~~~~~~la~~-~~~ 198 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR--DTWDCSSMLRGHNWWHLALF-YLE 198 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh--hccCCCcchhHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999999999999999999999999999 77775432 23345554 555
Q ss_pred CCCHHHHHHHHHHHHHH
Q 013299 245 PDLAEEGATFASRALEC 261 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~ 261 (446)
.|++++|+..+++++..
T Consensus 199 ~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 199 RGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 79999999999999763
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=5.2e-14 Score=139.20 Aligned_cols=311 Identities=14% Similarity=0.012 Sum_probs=218.3
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLP-CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~-~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
..++..+|.++...|+.++|...|.++.+. +.+.++... ....+. .+...|++++|
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~~a~--------------------~~~~~g~~~~A 62 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER---AHVEAL--------------------SAWIAGDLPKA 62 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH---HHHHHH--------------------HHHHcCCHHHH
Confidence 356677788899999999999999999887 223222111 111111 23346789999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNL 217 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~ 217 (446)
+..+ +.++..+|++..++.. +..+.. .+....+.+.++.....+|+...++..+|.++...|++++|+..
T Consensus 63 ~~~~-----~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 136 (355)
T cd05804 63 LALL-----EQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEA 136 (355)
T ss_pred HHHH-----HHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8875 5667889999988775 444444 45556666666666678888888999999999999999999999
Q ss_pred HHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHH
Q 013299 218 LRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATR 297 (446)
Q Consensus 218 ~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 297 (446)
+++++ .++|+++.++..++.+++. .|++++|+.++++++...+.+ .......+..++.++... |+
T Consensus 137 ~~~al--~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~-~~~~~~~~~~la~~~~~~-----------G~ 201 (355)
T cd05804 137 ARRAL--ELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCS-SMLRGHNWWHLALFYLER-----------GD 201 (355)
T ss_pred HHHHH--hhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCC-cchhHHHHHHHHHHHHHC-----------CC
Confidence 99999 9999999998888888765 799999999999999965432 222344566788887654 57
Q ss_pred HHHHHHHHHHHHHhhCC--CCHHHHHHH---HHHHHHcCCHHHHHHH---HHHHHhhcCCCC-HHHHHHHHHHHHHccCH
Q 013299 298 QAKALQALVSAARSTNM--RDLSILYRL---SLEYAEQRKLNAAHYY---AKMLLKLEGGSN-LKGWLLMARILSAQKRY 368 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P--~~~~a~~~l---g~~~~~~~~~~~A~~~---~~~al~l~P~~~-~~~~~~la~~~~~~g~~ 368 (446)
+++|+..|++++ ...| ......+.. ...+...|..+.+... ........|... .......+.++...|+.
T Consensus 202 ~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHI-APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHh-ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 899999999999 8887 333222222 1222233432222222 111111112210 13334688889999999
Q ss_pred HHHHHHHHHHHhhcC-------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 369 EDAETILNAALDQTG-------KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 369 ~eA~~~~~~al~~~p-------~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
++|...++......- .+....+....|.++...|++++|++.+..++.+.
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999988765321 00135667788999999999999999999999987
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.71 E-value=5.3e-13 Score=146.83 Aligned_cols=258 Identities=10% Similarity=-0.019 Sum_probs=194.0
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCC----CCCCcHHHHHHHHHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP----GIINRKERYHILALCY 205 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~ 205 (446)
..|...|++++|+.++.... -....-|...|..+-.++.+.|+.++|.+.|++... +.|+ ...|..+...|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~----~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay 589 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMR----SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKAC 589 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHH
Confidence 35667788999988763321 112223577888899999999999999999988864 3454 56788888899
Q ss_pred HHCCChHHHHHHHHHHhcCCCC-CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCcchhhhHHHHHhhchhHh
Q 013299 206 YGAGEDLVALNLLRTLLSGSED-PKCLPALLIASKICGEYPDLAEEGATFASRALECL-GDGCDQMESTANCLLGISLSA 283 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al~~~~~-P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~ 283 (446)
.+.|++++|...|++.. ..+ +.++..+..+...+ .+.|++++|+..|++..+.- .|+ ...|..+..++..
T Consensus 590 ~k~G~ldeA~elf~~M~--e~gi~p~~~tynsLI~ay-~k~G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~~k 661 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIH--EYNIKGTPEVYTIAVNSC-SQKGDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVAGH 661 (1060)
T ss_pred HHCCCHHHHHHHHHHHH--HcCCCCChHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHh
Confidence 99999999999999988 443 33445555554443 44788999999999888742 222 3455555555544
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCCHHHHHHHHH
Q 013299 284 QSKVAITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMAR 360 (446)
Q Consensus 284 ~~~~~~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~~~la~ 360 (446)
.|++++|.+.+++.. +.. +.|..++..+...|.+.|++++|+..|++... +.|+ ...|..+..
T Consensus 662 -----------~G~~eeA~~l~~eM~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~ 727 (1060)
T PLN03218 662 -----------AGDLDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALIT 727 (1060)
T ss_pred -----------CCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Confidence 356889999999988 654 56778899999999999999999999998865 4565 478999999
Q ss_pred HHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 361 ILSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 361 ~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
.+.+.|++++|+..+++.... .| +...|..+...+.+.|++++|...+.+.++.
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~P---d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCP---NTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999987753 46 5566777778889999999999988887653
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=1.9e-16 Score=135.70 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
...|++++ +++|++ ++.+|.++...|++++|+.+|++++.++|++ ..+|.++|.++..+|++++|+..|++++.+
T Consensus 13 ~~~~~~al-~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL-SVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH-HcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 36899999 999986 6789999999999999999999999999999 599999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 382 ~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
+| +++.+++++|.++...|++++|+..|++++++.|++.+.
T Consensus 88 ~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 88 DA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred CC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99 899999999999999999999999999999998654443
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=8.1e-15 Score=140.04 Aligned_cols=282 Identities=14% Similarity=0.073 Sum_probs=228.2
Q ss_pred HHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-HHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHH
Q 013299 71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAI-FLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILL 149 (446)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~-~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~ 149 (446)
..|+++|+++.|+++++-.-+. |.........++.. .++.++ .++..|...
T Consensus 427 ~~~lk~~d~~~aieilkv~~~k----dnk~~saaa~nl~~l~flqgg-------------------k~~~~aqqy----- 478 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKK----DNKTASAAANNLCALRFLQGG-------------------KDFADAQQY----- 478 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhc----cchhhHHHhhhhHHHHHHhcc-------------------cchhHHHHH-----
Confidence 3578899999999988765555 43332222233322 222222 134445443
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~ 229 (446)
.+.++..+--++.+..+.|.+-...|++++|.+.|+.++.-+..-.++.|+.|..+..+|+.++|+.+|-+.- .+--+
T Consensus 479 ad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh--~il~n 556 (840)
T KOG2003|consen 479 ADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH--AILLN 556 (840)
T ss_pred HHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH--HHHHh
Confidence 2455666677889999999999999999999999999999999999999999999999999999999998876 56667
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
+.++++.++.++ +.+.+..+|++++-++....|.+ +.++..||..|.+.| +-.+|.+++-..-
T Consensus 557 n~evl~qianiy-e~led~aqaie~~~q~~slip~d-----p~ilskl~dlydqeg-----------dksqafq~~ydsy 619 (840)
T KOG2003|consen 557 NAEVLVQIANIY-ELLEDPAQAIELLMQANSLIPND-----PAILSKLADLYDQEG-----------DKSQAFQCHYDSY 619 (840)
T ss_pred hHHHHHHHHHHH-HHhhCHHHHHHHHHHhcccCCCC-----HHHHHHHHHHhhccc-----------chhhhhhhhhhcc
Confidence 888888888874 55788999999999999977766 467788999886654 5678999998899
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
+.-|.|.++.-.||.-|....=.++|+.+|++|--+.|+. +.-.+..+.++.+.|+|+.|...|+..-+..| ++.+
T Consensus 620 -ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp--edld 695 (840)
T KOG2003|consen 620 -RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP--EDLD 695 (840)
T ss_pred -cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc--cchH
Confidence 8999999999999999999999999999999999999996 35555679999999999999999999999999 8988
Q ss_pred HHHHHHHHHHHhCC
Q 013299 390 LLRTKAKVQLVQGQ 403 (446)
Q Consensus 390 ~~~~~a~~~~~~g~ 403 (446)
.+-.+..+...+|-
T Consensus 696 clkflvri~~dlgl 709 (840)
T KOG2003|consen 696 CLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhccccc
Confidence 88877777766663
No 69
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.70 E-value=6e-14 Score=151.04 Aligned_cols=340 Identities=10% Similarity=-0.034 Sum_probs=244.9
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCc-----------cccHHHHH------------HHHHHH
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGA-----------DCKLQETL------------NRAVEL 68 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~l~~~~------------~~a~~~ 68 (446)
.|.....+|.+.|++++|++.|++.++.. ..|+.... ....+..+ ..+...
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDG------SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 35666677788899999999998887541 02221100 00000000 001122
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
+-..|.+.|++++|...|++.... +... .. .+...|...|+.++|+.++...
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~----~~vt----~n--------------------~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVA----WN--------------------SMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCC----ChhH----HH--------------------HHHHHHHhCCCHHHHHHHHHHH
Confidence 345677788888888888776443 2211 01 1123456678999999887332
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCC
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGEDLVALNLLRTLLSGSED 227 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~ 227 (446)
. .....-|...+..+..++.+.|++++|.+.++.+++.. +.+..++..|...|.+.|++++|...|++.. .
T Consensus 317 ~----~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~-- 388 (697)
T PLN03081 317 R----DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--R-- 388 (697)
T ss_pred H----HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--C--
Confidence 1 11223366688899999999999999999999998876 6677889999999999999999999999977 4
Q ss_pred CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 228 PKCLPALLIASKICGEYPDLAEEGATFASRALECL-GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 228 P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
| +...|..+... +.+.|+.++|+..|++.++.- .|+ ...+..+-.++.. .|..++|.+.|+
T Consensus 389 ~-d~~t~n~lI~~-y~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~-----------~g~~~~a~~~f~ 450 (697)
T PLN03081 389 K-NLISWNALIAG-YGNHGRGTKAVEMFERMIAEGVAPN-----HVTFLAVLSACRY-----------SGLSEQGWEIFQ 450 (697)
T ss_pred C-CeeeHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhc-----------CCcHHHHHHHHH
Confidence 4 33455555444 445789999999999988742 222 2334444444433 357899999999
Q ss_pred HHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 307 SAARSTNM--RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 307 ~al~~~~P--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
... +..+ .+...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.|...+++.++..|
T Consensus 451 ~m~-~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p- 525 (697)
T PLN03081 451 SMS-ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT--VNMWAALLTACRIHKNLELGRLAAEKLYGMGP- 525 (697)
T ss_pred HHH-HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-
Confidence 998 6443 34457888999999999999999999875 45666 37899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
++...|..+..++...|++++|.+.++...+.
T Consensus 526 -~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 526 -EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 78888999999999999999999999987654
No 70
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=1e-13 Score=137.91 Aligned_cols=268 Identities=17% Similarity=0.080 Sum_probs=233.3
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...+-++-|+..| ..+++..|....+|......-..-|..++-...+++++...|.....|...+..++..|+
T Consensus 525 ~~~k~~~~~carAVy-----a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 525 SCEKRPAIECARAVY-----AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred HHHhcchHHHHHHHH-----HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC
Confidence 455555566666554 445778899999999988888888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (446)
...|..++.++. ..+|++-+.++....+-.. ..+++.|...+.++....+. ..+|+--......
T Consensus 600 v~~ar~il~~af--~~~pnseeiwlaavKle~e-n~e~eraR~llakar~~sgT------eRv~mKs~~~er~------- 663 (913)
T KOG0495|consen 600 VPAARVILDQAF--EANPNSEEIWLAAVKLEFE-NDELERARDLLAKARSISGT------ERVWMKSANLERY------- 663 (913)
T ss_pred cHHHHHHHHHHH--HhCCCcHHHHHHHHHHhhc-cccHHHHHHHHHHHhccCCc------chhhHHHhHHHHH-------
Confidence 999999999999 8999999999877766554 57899999999999884332 3445444433222
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH
Q 013299 291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 291 ~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e 370 (446)
++..++|+..+++++ +.-|+.+..|+.+|+++.++++.+.|...|...++.-|... ..|..|+.+-.+.|..-.
T Consensus 664 ----ld~~eeA~rllEe~l-k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-pLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 664 ----LDNVEEALRLLEEAL-KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-PLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred ----hhhHHHHHHHHHHHH-HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-hHHHHHHHHHHHhcchhh
Confidence 467899999999999 99999999999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccC
Q 013299 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (446)
Q Consensus 371 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~ 427 (446)
|...++++.-.+| ++...|.-.-....+.|..+.|.....++|+=.|...--|-+
T Consensus 738 AR~ildrarlkNP--k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 738 ARSILDRARLKNP--KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred HHHHHHHHHhcCC--CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 9999999999999 899999999999999999999999999999998876655543
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68 E-value=2.3e-15 Score=140.18 Aligned_cols=180 Identities=16% Similarity=0.022 Sum_probs=126.4
Q ss_pred CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013299 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ 268 (446)
Q Consensus 189 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~ 268 (446)
..++..++.++.+|..+...|++++|+..|++++ ..+|+++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~----------------------------------- 69 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALE--SRYPFSPYA----------------------------------- 69 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCchhH-----------------------------------
Confidence 4567788899999999999999999999999999 888877531
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------CCHHHHH
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS---ILYRLSLEYAEQ--------RKLNAAH 337 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~---a~~~lg~~~~~~--------~~~~~A~ 337 (446)
..+++.+|.++... +++++|+..|++++ +.+|+++. +++.+|.++... |++++|+
T Consensus 70 --~~a~~~la~~~~~~-----------~~~~~A~~~~~~~l-~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~ 135 (235)
T TIGR03302 70 --EQAQLDLAYAYYKS-----------GDYAEAIAAADRFI-RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAF 135 (235)
T ss_pred --HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 12333444444332 34667777777777 77777665 577777777765 8899999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..|++++..+|++. .++..+..+... .+ ......+.+|.++..+|++++|+..|+++++.
T Consensus 136 ~~~~~~~~~~p~~~-~~~~a~~~~~~~-----------------~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 136 EAFQELIRRYPNSE-YAPDAKKRMDYL-----------------RN--RLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHCCCCh-hHHHHHHHHHHH-----------------HH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999984 665433322110 11 11233457889999999999999999999999
Q ss_pred HhhhhhhccCCcchhhHHhhhh
Q 013299 418 LQVQTKTFSSDKRFYKVYFMRK 439 (446)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~ 439 (446)
.|+.+......-..-.+|...+
T Consensus 196 ~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 196 YPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred CCCCcchHHHHHHHHHHHHHcC
Confidence 8876544443344444444433
No 72
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=8.5e-16 Score=131.63 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=113.2
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013299 252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR 331 (446)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~ 331 (446)
..+++++++. .|+ .+..+|.++... |++++|+..|++++ .++|+++.+++++|.++...|
T Consensus 13 ~~~~~~al~~-~p~-------~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 13 EDILKQLLSV-DPE-------TVYASGYASWQE-----------GDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHc-CHH-------HHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHh
Confidence 4678888884 332 255677777554 57899999999999 999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
++++|+..|+++++++|+++ .+|+++|.++..+|++++|+..|+++++..| +++..+.++|.+....
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~-~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p--~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHP-EPVYQTGVCLKMMGEPGLAREAFQTAIKMSY--ADASWSEIRQNAQIMV 139 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHH
Confidence 99999999999999999995 9999999999999999999999999999999 9999999998877654
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.9e-14 Score=131.46 Aligned_cols=264 Identities=14% Similarity=0.040 Sum_probs=157.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH-----HHHHHHHHHH
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK-----ERYHILALCY 205 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~ 205 (446)
-|.-.++.++|+.++ -.++..+|...+++..||..+...|..+.||..=+..+. .|+-+ -+.+.||.-|
T Consensus 44 NfLLs~Q~dKAvdlF-----~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 44 NFLLSNQPDKAVDLF-----LEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHHhhcCcchHHHHH-----HHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 344455666666665 224455666667777777777777777777765554443 34443 3566667777
Q ss_pred HHCCChHHHHHHHHHHhcCCCCCCCh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhh
Q 013299 206 YGAGEDLVALNLLRTLLSGSEDPKCL-PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al~~~~~P~~~-~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (446)
+..|-++.|+..|.... . .|+.. .+.-.+..+ |+....+++||+..++.....+... ...++..|...
T Consensus 118 m~aGl~DRAE~~f~~L~--d-e~efa~~AlqqLl~I-YQ~treW~KAId~A~~L~k~~~q~~-------~~eIAqfyCEL 186 (389)
T COG2956 118 MAAGLLDRAEDIFNQLV--D-EGEFAEGALQQLLNI-YQATREWEKAIDVAERLVKLGGQTY-------RVEIAQFYCEL 186 (389)
T ss_pred HHhhhhhHHHHHHHHHh--c-chhhhHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHcCCccc-------hhHHHHHHHHH
Confidence 77777777777777766 2 24433 344334444 3445566677777766666433221 12223333322
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013299 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~ 364 (446)
+... ....+.+.|+..+.+|+ +-||+...+-..+|.+....|+++.|++.++++++.||+.-.++...|..+|..
T Consensus 187 Aq~~----~~~~~~d~A~~~l~kAl-qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 187 AQQA----LASSDVDRARELLKKAL-QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHH----hhhhhHHHHHHHHHHHH-hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2211 23455666777777777 777777777777777777777777777777777777776633566667777777
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+|+.++.+.++.++.+.++ ...+-..++.+.....-.++|.....+.|...|
T Consensus 262 lg~~~~~~~fL~~~~~~~~---g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNT---GADAELMLADLIELQEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred hCCHHHHHHHHHHHHHccC---CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC
Confidence 7777777777777776666 334444555555555566666666666555543
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.67 E-value=2.6e-14 Score=147.65 Aligned_cols=335 Identities=14% Similarity=0.102 Sum_probs=242.7
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHH---H----------HHHHHHHHhhhcCCCCCCc----c
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAK---L----------QKEFAIFLLYCGGETCPPN----L 124 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~---l----------~~~~a~~ll~~~~~~~~~~----~ 124 (446)
+..++-.+|.+|...-+...|-..|++|.++ |+..... + ...+.+. ++.+ +.++.. .
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adtyae~~~we~a~~I~-l~~~-qka~a~~~k~n 564 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADTYAEESTWEEAFEIC-LRAA-QKAPAFACKEN 564 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHHhhccccHHHHHHHH-HHHh-hhchHHHHHhh
Confidence 6789999999999988999999999999999 5533211 1 1112221 1111 111111 1
Q ss_pred ccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 013299 125 RSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (446)
Q Consensus 125 ~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 204 (446)
....+..|...+++-.|+.-+ +.+++.+|.|...|..+|.+|...|++..|+..|.+|..++|.+.-+.|..+.+
T Consensus 565 W~~rG~yyLea~n~h~aV~~f-----QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEF-----QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred hhhccccccCccchhhHHHHH-----HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 123555667778888888875 677888999999999999999999999999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHhcCCCCCCC-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc------C--------
Q 013299 205 YYGAGEDLVALNLLRTLLSGSEDPKC-------LPALLIASKICGEYPDLAEEGATFASRALECL------G-------- 263 (446)
Q Consensus 205 ~~~~g~~~eA~~~~~~al~~~~~P~~-------~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~------~-------- 263 (446)
....|+|.+|+..+...+ ....+. .+.++..+..++. .|-...|+.++++.++.. .
T Consensus 640 ecd~GkYkeald~l~~ii--~~~s~e~~~q~gLaE~~ir~akd~~~-~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLII--YAFSLERTGQNGLAESVIRDAKDSAI-TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHhhhHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999988877 222222 1222222222221 123333444444333211 0
Q ss_pred --------------CCcch-------------------------------------hhhHHHHHhhchhHhhhhhhhchH
Q 013299 264 --------------DGCDQ-------------------------------------MESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 264 --------------~~~~~-------------------------------------~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
|+... ..+..|+++|+.|...-....
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~--- 793 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG--- 793 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC---
Confidence 00000 001224444443332110000
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
+...+-..|+.++++++ +++.++...|+.||.+ ...|.+.-|-.+|-+++.++|.+ ...|.|+|.+.....+++-|.
T Consensus 794 et~~~~~~Ai~c~KkaV-~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~-~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAV-SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC-HCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CcchhHHHHHHHHHHHH-HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc-hhheeccceeEEecccHHHhh
Confidence 11223368999999999 9999999999999988 66689999999999999999999 599999999999999999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
..+.++..++| +|...|...+.+....|+.-+++..+.+.-++.
T Consensus 871 ~af~~~qSLdP--~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 871 PAFSSVQSLDP--LNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred HHHHhhhhcCc--hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 99999999999 999999999999999999999999999966665
No 75
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=7e-13 Score=132.03 Aligned_cols=308 Identities=16% Similarity=0.050 Sum_probs=165.4
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHH
Q 013299 66 VELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLL 145 (446)
Q Consensus 66 ~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l 145 (446)
+..-+..+.+.+-++=|...|..+|+. .|.... +....+.+.-. .|-.++-..+|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv----fp~k~s-lWlra~~~ek~--------------------hgt~Esl~All 573 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV----FPCKKS-LWLRAAMFEKS--------------------HGTRESLEALL 573 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhH-HHHHHHHHHHh--------------------cCcHHHHHHHH
Confidence 333446788899999999999999998 654321 21222111100 11122211111
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCC
Q 013299 146 MILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGS 225 (446)
Q Consensus 146 ~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 225 (446)
+.++...|.....|...+.-....|+...|...+.++++.+|++.+.|+.--.+......+++|...|.++- .
T Consensus 574 -----qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar--~ 646 (913)
T KOG0495|consen 574 -----QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR--S 646 (913)
T ss_pred -----HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh--c
Confidence 233444565555555555555556666666666666666666666666655555556666666666666665 4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHH
Q 013299 226 EDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQAL 305 (446)
Q Consensus 226 ~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~ 305 (446)
..|..- +++-.+. ...-++..++|+..++++++..|.- ...|+.+|.++.++ ++.+.|...|
T Consensus 647 ~sgTeR-v~mKs~~-~er~ld~~eeA~rllEe~lk~fp~f-----~Kl~lmlGQi~e~~-----------~~ie~aR~aY 708 (913)
T KOG0495|consen 647 ISGTER-VWMKSAN-LERYLDNVEEALRLLEEALKSFPDF-----HKLWLMLGQIEEQM-----------ENIEMAREAY 708 (913)
T ss_pred cCCcch-hhHHHhH-HHHHhhhHHHHHHHHHHHHHhCCch-----HHHHHHHhHHHHHH-----------HHHHHHHHHH
Confidence 444322 2222111 1223455566666666666644321 34555666655433 3455555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW 385 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 385 (446)
...+ +.-|+.+..|..|+.+-...|.+-.|...+.++.--||+++ ..|...-.+..+.|..+.|...+.+||+.-|+.
T Consensus 709 ~~G~-k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 709 LQGT-KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-LLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred Hhcc-ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 5555 55555555555555555555555555555555555555552 555555555555555555555555555554420
Q ss_pred ----------------------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 386 ----------------------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 386 ----------------------------~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
.++.++...|.++....+++.|.+.|.+++.+.|++.++|
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 2334444555555555566666666666666665555554
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.67 E-value=1.7e-15 Score=136.72 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHccC--HHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL-SAQKR--YEDAE 372 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~-~~~g~--~~eA~ 372 (446)
++.++++..+++++ +.+|+|+++|+.||.++...|++++|+..|+++++++|++ ..++..+|.++ ...|+ +++|.
T Consensus 53 ~~~~~~i~~l~~~L-~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKI-RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-AELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCCcHHHH
Confidence 45689999999999 9999999999999999999999999999999999999999 59999999986 67787 59999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..++++++.+| ++..+++++|.++...|++++|+..|++++++.|.
T Consensus 131 ~~l~~al~~dP--~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 131 EMIDKALALDA--NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999 89999999999999999999999999999999875
No 77
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.67 E-value=3e-12 Score=140.96 Aligned_cols=327 Identities=11% Similarity=-0.007 Sum_probs=221.3
Q ss_pred HHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCC
Q 013299 16 KAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWN 95 (446)
Q Consensus 16 ~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~ 95 (446)
.-.++.+.|++++|.+.+..+.+.. -.|+. ..+..+-..|.+.|++++|..+|+++.+....
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~------------~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~ 504 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAG------LKADC------------KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE 504 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcC------CCCCH------------HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC
Confidence 3344556778888888777766531 02221 12333334566677777777777776654211
Q ss_pred CChHHHHHHHH--------HHHHHHhhhcCC-CCCCccc--cccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 96 LDAETTAKLQK--------EFAIFLLYCGGE-TCPPNLR--SQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSIL 164 (446)
Q Consensus 96 ~~~~~~~~l~~--------~~a~~ll~~~~~-~~~~~~~--~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~ 164 (446)
++......+.. ..|.-++..+.. ...|+.. ..+...+...|++++|..++...... .....| |...|
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~P-D~vTy 582 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDP-DHITV 582 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCC-cHHHH
Confidence 12211111100 111111111111 1122221 12334566788999999886322100 001223 46688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (446)
..+-.++.+.|++++|.+.|+++.+.+ +.++..|..+...|.+.|++++|+..|++..+....|+.. .+..+...+ .
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~-TynsLI~a~-~ 660 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV-FFSALVDVA-G 660 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH-H
Confidence 888899999999999999999999886 5678899999999999999999999999998434578643 444444444 4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHH
Q 013299 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN-MRDLSILYR 322 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~ 322 (446)
+.|++++|...++++.+.--+. ....+..+..+|.+. |+.++|+..|++.. +.. ..|...|..
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~p----d~~tynsLI~ay~k~-----------G~~eeA~~lf~eM~-~~g~~PdvvtyN~ 724 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKL----GTVSYSSLMGACSNA-----------KNWKKALELYEDIK-SIKLRPTVSTMNA 724 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HcCCCCCHHHHHH
Confidence 5789999999999998842211 145677777777654 57899999999987 542 346788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
+...|.+.|++++|++.|++... +.|+ ...|..+-..+...|++++|..++.++++..
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd--~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLGLCPN--TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999998865 4576 3778888899999999999999999999754
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6.2e-14 Score=129.26 Aligned_cols=232 Identities=16% Similarity=0.127 Sum_probs=182.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH-----HHHHHHH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-----ALLIASK 239 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~-----a~~~~~~ 239 (446)
+..|.-+.-.++.++|+..|-..++.+|...++++.||.++.+.|..+.|+.+-+..+ ..|+-+. +...+|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~---~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL---ESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHH
Confidence 3456666677888889999988999999999999999999999999999998888877 4676543 3444555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH-
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS- 318 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~- 318 (446)
-+ ...|-+|.|...|...++ .+. ....+.-.|-.+|... ..+++|++.-++.+ ++.|++..
T Consensus 116 Dy-m~aGl~DRAE~~f~~L~d-e~e----fa~~AlqqLl~IYQ~t-----------reW~KAId~A~~L~-k~~~q~~~~ 177 (389)
T COG2956 116 DY-MAAGLLDRAEDIFNQLVD-EGE----FAEGALQQLLNIYQAT-----------REWEKAIDVAERLV-KLGGQTYRV 177 (389)
T ss_pred HH-HHhhhhhHHHHHHHHHhc-chh----hhHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHH-HcCCccchh
Confidence 53 346888888888887776 232 2345677777777775 35788999888888 88887643
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-HHHHHH
Q 013299 319 ----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-GELLRT 393 (446)
Q Consensus 319 ----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~~~ 393 (446)
.+.-|+..+....+.+.|+..+++|++.+|++ +.+-..+|.+.+..|+|+.|+..++.+++.+| +. +++.-.
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~--~yl~evl~~ 254 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQNP--EYLSEVLEM 254 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 45678888888888899999999999999988 58888889999999999999999999998888 54 667778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+..+|..+|+.++++..+++..+..++
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 888888999999888888888777665
No 79
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.67 E-value=1.6e-13 Score=147.78 Aligned_cols=317 Identities=9% Similarity=-0.023 Sum_probs=221.8
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHH--------HHHHH----hhhcCCCCCCccc--cccCcc
Q 013299 66 VELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKE--------FAIFL----LYCGGETCPPNLR--SQMGSS 131 (446)
Q Consensus 66 ~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~--------~a~~l----l~~~~~~~~~~~~--~~~~~~ 131 (446)
+..+...|.+.|++++|+..|++.++....+++.....+... .+..+ ...+. .++.. ..+...
T Consensus 192 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~---~~d~~~~n~Li~~ 268 (697)
T PLN03081 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV---VGDTFVSCALIDM 268 (697)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC---CccceeHHHHHHH
Confidence 334446778889999999999998876322232211111000 00000 01111 11111 233456
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHHHCCC
Q 013299 132 FVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGE 210 (446)
Q Consensus 132 ~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 210 (446)
|...|++++|..++ + ...+.+...|+.+...|.+.|++++|++.|++..... .-+..++..+..++.+.|+
T Consensus 269 y~k~g~~~~A~~vf-----~---~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 269 YSKCGDIEDARCVF-----D---GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHCCCHHHHHHHH-----H---hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 77888888888775 2 2234577888889999999999999999998875432 2245678888888899999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (446)
+++|...+...++....| +...+..+...+ .+.|+.++|...|++..+ ++ ...|..+..+|.+.
T Consensus 341 ~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y-~k~G~~~~A~~vf~~m~~---~d-----~~t~n~lI~~y~~~------ 404 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPL-DIVANTALVDLY-SKWGRMEDARNVFDRMPR---KN-----LISWNALIAGYGNH------ 404 (697)
T ss_pred hHHHHHHHHHHHHhCCCC-CeeehHHHHHHH-HHCCCHHHHHHHHHhCCC---CC-----eeeHHHHHHHHHHc------
Confidence 999999998888422233 444455455443 447889999988887653 22 34567777777543
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHcc
Q 013299 291 DFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK---LEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 291 ~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~~~la~~~~~~g 366 (446)
|+.++|++.|++.. +.. ..|..++..+-..+...|++++|..+|+...+ +.|+ ...|..+..++.+.|
T Consensus 405 -----G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~G 476 (697)
T PLN03081 405 -----GRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGREG 476 (697)
T ss_pred -----CCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhcC
Confidence 57899999999988 643 33466777888888999999999999999875 3465 268888999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 367 ~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|.+
T Consensus 477 ~~~eA~~~~~~~-~~~p---~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 477 LLDEAYAMIRRA-PFKP---TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred CHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 999999998765 2445 56778889999999999999999999998887653
No 80
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.8e-15 Score=138.41 Aligned_cols=176 Identities=18% Similarity=0.086 Sum_probs=119.6
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (446)
+.-+.|+.-.|++++|...--..+ +++|.+..+++..+.+++ -.++.+.|+.+|++++...|.+.. ...+.+..-
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~il--kld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~--sk~~~~~~k 247 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDIL--KLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQK--SKSASMMPK 247 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHH--hcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhh--HHhHhhhHH
Confidence 334555666666666666666666 566666665554443322 345555666666666663222211 001111111
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.+... +....+..+.|.+.+|.++|..+| .++|+|. ..++++|.+....|+..+|+..++.|+.|||.. ..+
T Consensus 248 ~le~~--k~~gN~~fk~G~y~~A~E~Yteal-~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ika 323 (486)
T KOG0550|consen 248 KLEVK--KERGNDAFKNGNYRKAYECYTEAL-NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKA 323 (486)
T ss_pred HHHHH--HhhhhhHhhccchhHHHHHHHHhh-cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHH
Confidence 11000 000011234678999999999999 9999974 467899999999999999999999999999999 699
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 355 WLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
++..|.++..++++++|+..|++|++...
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999998866
No 81
>PLN03077 Protein ECB2; Provisional
Probab=99.64 E-value=6.7e-13 Score=146.23 Aligned_cols=117 Identities=9% Similarity=0.025 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
.|..++|...|+... +..+ .+...+..+..++.+.|++++|...+++. .+.|+ ...|..|-..+...|+.+.|.
T Consensus 602 ~g~v~ea~~~f~~M~-~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd--~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 602 SGMVTQGLEYFHSME-EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD--PAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred cChHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHHcCChHHHH
Confidence 467889999998887 5543 24567888889999999999999998885 46777 378888877888889999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
...++++++.| ++...+..++.+|...|++++|.+..+...+.
T Consensus 678 ~~a~~l~~l~p--~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 678 LAAQHIFELDP--NSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHhhCC--CCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999 88888999999999999999999888766543
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=1.4e-14 Score=130.73 Aligned_cols=127 Identities=11% Similarity=0.030 Sum_probs=106.2
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~ 253 (446)
.++.++++..+++++..+|+++++|+.||.++...|++++|+..|++++ +++|+++.++..++.+.+...|+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al--~l~P~~~~~~~~lA~aL~~~~g~~----- 124 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL--QLRGENAELYAALATVLYYQAGQH----- 124 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCCC-----
Confidence 5667888888999999999999999999999999999999999999999 899999888877665433222210
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013299 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~ 333 (446)
..++|...+++++ +++|+++.+++++|..+.+.|++
T Consensus 125 -------------------------------------------~~~~A~~~l~~al-~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 125 -------------------------------------------MTPQTREMIDKAL-ALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred -------------------------------------------CcHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHcCCH
Confidence 1368888999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 013299 334 NAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~ 351 (446)
++|+.+++++++++|.+.
T Consensus 161 ~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 161 AQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHhhCCCCc
Confidence 999999999999988763
No 83
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.60 E-value=1.9e-14 Score=121.86 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=111.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
+.|++++ +.+|++..+.+.+|..+...|++++|+..+++++.++|+++ .+|..+|.++..+|++++|+.+++++++.+
T Consensus 4 ~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLL-GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS-RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHH-cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4688999 99999999999999999999999999999999999999994 999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
| +++..++++|.++...|++++|+..|++++++.|+...
T Consensus 82 p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 P--DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9 89999999999999999999999999999999875543
No 84
>PLN03077 Protein ECB2; Provisional
Probab=99.59 E-value=5.5e-12 Score=139.05 Aligned_cols=192 Identities=9% Similarity=-0.019 Sum_probs=95.3
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCC
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~ 93 (446)
...-.+|.+.|++++|...|.+..+ |+. ..+..+-..|.+.|++++|+..|++.....
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~----------~d~------------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPR----------RDC------------ISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCC----------CCc------------chhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 3344567777888888777766421 211 122333356778888888888888887762
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 013299 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI 173 (446)
Q Consensus 94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~ 173 (446)
..|+... + ..+ + ..+...++.+.|..++... .-...+.|..++..+...|.+
T Consensus 284 --~~Pd~~t-y-~~l----l----------------~a~~~~g~~~~a~~l~~~~----~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 284 --VDPDLMT-I-TSV----I----------------SACELLGDERLGREMHGYV----VKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred --CCCChhH-H-HHH----H----------------HHHHhcCChHHHHHHHHHH----HHhCCccchHHHHHHHHHHHh
Confidence 2332211 0 000 0 1112234444444433111 111123345555566666666
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~ 253 (446)
.|++++|.+.|++... .+...|..+...|.+.|++++|+..|++..+....|+.......+. . +...|+.++|..
T Consensus 336 ~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~-a-~~~~g~~~~a~~ 410 (857)
T PLN03077 336 LGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS-A-CACLGDLDVGVK 410 (857)
T ss_pred cCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH-H-HhccchHHHHHH
Confidence 6666666666665432 2344566666666666666666666665442234455433222221 1 123445555555
Q ss_pred HHHHHHH
Q 013299 254 FASRALE 260 (446)
Q Consensus 254 ~~~~al~ 260 (446)
.+..+++
T Consensus 411 l~~~~~~ 417 (857)
T PLN03077 411 LHELAER 417 (857)
T ss_pred HHHHHHH
Confidence 5555544
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.59 E-value=2e-13 Score=123.18 Aligned_cols=178 Identities=19% Similarity=0.075 Sum_probs=115.5
Q ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013299 180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRAL 259 (446)
Q Consensus 180 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al 259 (446)
+...+-+....+|++.++ .+++..++..|+-+.+.....+++ -.+|++..++...+...+. .|++.+|+..++++.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHH-hcchHHHHHHHHHHh
Confidence 455555556666777777 777777777777777777777766 5666666655433433322 355555555555555
Q ss_pred HHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013299 260 ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYY 339 (446)
Q Consensus 260 ~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~ 339 (446)
...|++ +.+|+.+|.+|.+ .|++++|...|.+++ ++.|+++.+..|+|..+.-.|+++.|..+
T Consensus 128 ~l~p~d-----~~~~~~lgaaldq-----------~Gr~~~Ar~ay~qAl-~L~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 128 RLAPTD-----WEAWNLLGAALDQ-----------LGRFDEARRAYRQAL-ELAPNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred ccCCCC-----hhhhhHHHHHHHH-----------ccChhHHHHHHHHHH-HhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 533332 4555556666643 345677777777777 77777777777777777777777777777
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 340 AKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 340 ~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+.++...-+.+ ..+..+++.+...+|++++|.++..+-+
T Consensus 191 ll~a~l~~~ad-~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 191 LLPAYLSPAAD-SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhCCCCc-hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 77776666655 3777777777777777777776665443
No 86
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.57 E-value=1.7e-13 Score=138.26 Aligned_cols=222 Identities=17% Similarity=0.141 Sum_probs=192.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG 242 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~ 242 (446)
.--.++.++...|=..+|+..|++ .+.|-....||...|+-..|..+..+-+ + +|.++..|..+|.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~l--e-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQEL--E-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHh--c-CCCcchhHHHhhhhcc
Confidence 344789999999999999999985 5778889999999999999999999999 6 6667777877777632
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013299 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
. -.+|++|.+..+. ....|+..+|..... .+++.++..+++..+ +++|-....||.
T Consensus 469 d--------~s~yEkawElsn~----~sarA~r~~~~~~~~-----------~~~fs~~~~hle~sl-~~nplq~~~wf~ 524 (777)
T KOG1128|consen 469 D--------PSLYEKAWELSNY----ISARAQRSLALLILS-----------NKDFSEADKHLERSL-EINPLQLGTWFG 524 (777)
T ss_pred C--------hHHHHHHHHHhhh----hhHHHHHhhcccccc-----------chhHHHHHHHHHHHh-hcCccchhHHHh
Confidence 2 2577888875332 235667777765433 357999999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
+|.+..+.++++.|..+|.+++.++|++ .++|+|++..|...|+-.+|...+.+|++-+- +++.+|.|.-.+....|
T Consensus 525 ~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLVSVDVG 601 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhhhhhcc
Confidence 9999999999999999999999999999 59999999999999999999999999999886 88999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhh
Q 013299 403 QLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~~ 422 (446)
.+++|++.|.+.+++.++..
T Consensus 602 e~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 602 EFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred cHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999987643
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.57 E-value=1.9e-13 Score=143.97 Aligned_cols=148 Identities=13% Similarity=0.059 Sum_probs=106.3
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013299 181 ATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE 260 (446)
Q Consensus 181 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~ 260 (446)
+.........-|++++++++||.+..+.|++++|+..++.++ .+.|++..++...+.++.+ .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~--~~~Pd~~~a~~~~a~~L~~-~--------------- 133 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIH--QRFPDSSEAFILMLRGVKR-Q--------------- 133 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH--hhCCCcHHHHHHHHHHHHH-h---------------
Confidence 333333444567888899999999999999999999999999 8899988887766655332 2
Q ss_pred HcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 013299 261 CLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYA 340 (446)
Q Consensus 261 ~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~ 340 (446)
+++++|+..+++++ ..+|+++.+++.+|.++.+.|++++|+..|
T Consensus 134 -----------------------------------~~~eeA~~~~~~~l-~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 134 -----------------------------------QGIEAGRAEIELYF-SGGSSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred -----------------------------------ccHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34566666666777 677777777777777777777777777777
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 341 KMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 341 ~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+++++.+|++ ..+|..+|.++...|+.++|...|++|++...
T Consensus 178 ~~~~~~~p~~-~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 178 ERLSRQHPEF-ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 7777766766 37777777777777777777777777776654
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.54 E-value=2.4e-13 Score=143.28 Aligned_cols=134 Identities=16% Similarity=0.066 Sum_probs=126.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..++.+||.+.... |++++|+..++.++ ++.|++..++.+++.++.+.+++++|+..+++++..+|++
T Consensus 86 ~~~~~~La~i~~~~-----------g~~~ea~~~l~~~~-~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 86 ELFQVLVARALEAA-----------HRSDEGLAVWRGIH-QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHHHHHHHc-----------CCcHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 57888888887554 67899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+++.+|.++..+|+|++|+..|++++..+| ++..++..+|.++...|+.++|...|+++++..-
T Consensus 154 -~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 154 -AREILLEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred -HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 59999999999999999999999999999899 8999999999999999999999999999998863
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.54 E-value=1.6e-11 Score=122.60 Aligned_cols=337 Identities=18% Similarity=0.103 Sum_probs=234.5
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
++|.+++-....++|......++.+|+. .|++. +.+...|..+...|+.++|....+.+++
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHg-----------eslAmkGL~L~~lg~~~ea~~~vr~glr 69 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHG-----------ESLAMKGLTLNCLGKKEEAYELVRLGLR 69 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccc-----------hhHHhccchhhcccchHHHHHHHHHHhc
Confidence 5778888888999999999999999985 45432 3455667888899999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (446)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (446)
. |+.+.- ...-+|.. +....+|++||.++ ..++...|+|..+|..++...
T Consensus 70 ~----d~~S~v-CwHv~gl~--------------------~R~dK~Y~eaiKcy-----~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 70 N----DLKSHV-CWHVLGLL--------------------QRSDKKYDEAIKCY-----RNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred c----Ccccch-hHHHHHHH--------------------HhhhhhHHHHHHHH-----HHHHhcCCCcHHHHHHHHHHH
Confidence 7 664321 23333432 23345799999986 667888999999999999999
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCC--CCCh-----HHHHHHHHHHhcC
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSED--PKCL-----PALLIASKICGEY 244 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~--P~~~-----~a~~~~~~~~~~~ 244 (446)
.++++++-....=.+.++..|..-..|+.++.++.-.|.+..|..+++.-.+ ..+ |+.. ...+....+.. .
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~-t~~~~~s~~~~e~se~~Ly~n~i~~-E 197 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEK-TQNTSPSKEDYEHSELLLYQNQILI-E 197 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCHHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999999999999999999999999999999999988887773 222 3321 22333333322 2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
.|..++|.+.+..--... ...-......+..+ .+++++++|+..|+..+ ..+|+|...+..+=
T Consensus 198 ~g~~q~ale~L~~~e~~i-----~Dkla~~e~ka~l~-----------~kl~~lEeA~~~y~~Ll-~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQI-----VDKLAFEETKADLL-----------MKLGQLEEAVKVYRRLL-ERNPDNLDYYEGLE 260 (700)
T ss_pred cccHHHHHHHHHhhhhHH-----HHHHHHhhhHHHHH-----------HHHhhHHhHHHHHHHHH-hhCchhHHHHHHHH
Confidence 344444444433211100 00000001112222 45688999999999999 99999998776554
Q ss_pred HHHHHcCCHHHHH-HHHH--------------------------------------------------------------
Q 013299 325 LEYAEQRKLNAAH-YYAK-------------------------------------------------------------- 341 (446)
Q Consensus 325 ~~~~~~~~~~~A~-~~~~-------------------------------------------------------------- 341 (446)
.++..-.+--+++ ..|.
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le 340 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLE 340 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHH
Confidence 4442111111111 1111
Q ss_pred -------HHHhhc------------CCCCHHHHH--HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 342 -------MLLKLE------------GGSNLKGWL--LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 342 -------~al~l~------------P~~~~~~~~--~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
..+.-. |-. .-+|. .++.-+-..|+++.|..+++.|+.-.| ...+.+..+|.++.-
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt-tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP--TliEly~~KaRI~kH 417 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPT-TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP--TLIELYLVKARIFKH 417 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCch-HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc--hHHHHHHHHHHHHHh
Confidence 111100 111 12333 456667789999999999999999999 899999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHh
Q 013299 401 QGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 401 ~g~~~eA~~~~~~~l~l~~ 419 (446)
.|.+++|...+.++-+++.
T Consensus 418 ~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 418 AGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cCChHHHHHHHHHHHhccc
Confidence 9999999999999988863
No 90
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.53 E-value=5.2e-13 Score=141.79 Aligned_cols=214 Identities=13% Similarity=0.035 Sum_probs=174.4
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a 233 (446)
....|.+.+++..|..++...+++++|++.++.+++.+|+...+|+.+|.++.+.+++.+|... +++ ...|++..
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l--~~~~~~~~- 98 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI--DSFSQNLK- 98 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh--hhcccccc-
Confidence 3556899999999999999999999999999999999999999999999999999998888877 777 44444321
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
+ .++.++-..+...+.+ ..+++.+|.||.+. |+.++|...|++++ +++
T Consensus 99 --------------~-~~ve~~~~~i~~~~~~-----k~Al~~LA~~Ydk~-----------g~~~ka~~~yer~L-~~D 146 (906)
T PRK14720 99 --------------W-AIVEHICDKILLYGEN-----KLALRTLAEAYAKL-----------NENKKLKGVWERLV-KAD 146 (906)
T ss_pred --------------h-hHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-hcC
Confidence 1 2333333333323332 46899999999664 57899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH-
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR- 392 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~- 392 (446)
|+|+.+++++|..|... ++++|+.++.+|+.. +...++|.++..++.+.+..+| ++.+.++
T Consensus 147 ~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~--~d~d~f~~ 208 (906)
T PRK14720 147 RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS--DDFDFFLR 208 (906)
T ss_pred cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc--ccchHHHH
Confidence 99999999999999999 999999999999886 4455789999999999999999 6655422
Q ss_pred -------HHH------------HHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 393 -------TKA------------KVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 393 -------~~a------------~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
.++ ..+.+.+++++++..++.+|++.|++.
T Consensus 209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 209 IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence 223 566777899999999999999987643
No 91
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=1e-12 Score=118.72 Aligned_cols=171 Identities=20% Similarity=0.091 Sum_probs=154.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 152 VALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
....++|++.++ ..+...+...|+-+.+..+..++...+|.+.+....+|....+.|++.+|+..++++. .++|++.
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~ 134 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDW 134 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCCh
Confidence 345778999999 9999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
.++..+|. ++.+.|++++|...|.++++..+.+ +.+..++|+.|.-. |+++.|...+..+. .
T Consensus 135 ~~~~~lga-aldq~Gr~~~Ar~ay~qAl~L~~~~-----p~~~nNlgms~~L~-----------gd~~~A~~lll~a~-l 196 (257)
T COG5010 135 EAWNLLGA-ALDQLGRFDEARRAYRQALELAPNE-----PSIANNLGMSLLLR-----------GDLEDAETLLLPAY-L 196 (257)
T ss_pred hhhhHHHH-HHHHccChhHHHHHHHHHHHhccCC-----chhhhhHHHHHHHc-----------CCHHHHHHHHHHHH-h
Confidence 99997765 4667899999999999999976554 46889999988654 67899999999999 8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKML 343 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 343 (446)
.-+.|..+..||+.+...+|++++|.....+=
T Consensus 197 ~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 197 SPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred CCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 88889999999999999999999999877654
No 92
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.52 E-value=2.4e-13 Score=115.02 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=102.8
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 311 STN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 311 ~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
.+. |++.+..|.+|..+...|++++|+..|+-.+.++|.+ ...|++||.++..+|+|.+|+..|.+|+.++| +++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~ 104 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQ 104 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCch
Confidence 778 8999999999999999999999999999999999999 59999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
++++.|.++...|+.+.|.+.|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999983
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.51 E-value=6.6e-12 Score=125.39 Aligned_cols=266 Identities=15% Similarity=0.033 Sum_probs=199.6
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHH
Q 013299 137 NIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN 216 (446)
Q Consensus 137 ~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 216 (446)
+|...+.+ .+.++++.|+.++..-..|..+...|+-++|....+.++..++.+.--|..+|.++....+|++|+.
T Consensus 22 QYkkgLK~-----~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 22 QYKKGLKL-----IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHhHHHH-----HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 34445444 3778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHH
Q 013299 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (446)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (446)
+|+.|+ .++|+|...+.-++-+ ..++++++.....-.+.++..|.. -..|+-.++++.- .|
T Consensus 97 cy~nAl--~~~~dN~qilrDlslL-Q~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L-----------~g 157 (700)
T KOG1156|consen 97 CYRNAL--KIEKDNLQILRDLSLL-QIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHL-----------LG 157 (700)
T ss_pred HHHHHH--hcCCCcHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHH-----------HH
Confidence 999999 9999999988766543 445678877777777788854432 2344555554433 35
Q ss_pred HHHHHHHHHHHHHHhhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH
Q 013299 297 RQAKALQALVSAARSTN---MRD-----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~---P~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~ 368 (446)
.+..|+...+.-. ... |+. ..+......++.+.|.+++|++...+--.---+. .......|.+++.+|++
T Consensus 158 ~y~~A~~il~ef~-~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk-la~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 158 EYKMALEILEEFE-KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK-LAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH-HHHhhhHHHHHHHHhhH
Confidence 6777777666555 333 332 2345666777888899999988775542222232 34566789999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhh
Q 013299 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (446)
Q Consensus 369 ~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~ 433 (446)
++|+..|...+..+| |+...+..+-.++- .+....+....+++...++++-.....+++.
T Consensus 236 EeA~~~y~~Ll~rnP--dn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl 295 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNP--DNLDYYEGLEKALG---KIKDMLEALKALYAILSEKYPRHECPRRLPL 295 (700)
T ss_pred HhHHHHHHHHHhhCc--hhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhcCcccccchhccH
Confidence 999999999999999 88776666555543 5666666666677776666666665555543
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=1.7e-11 Score=125.04 Aligned_cols=269 Identities=15% Similarity=0.030 Sum_probs=192.6
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG- 209 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 209 (446)
++...|++++|+..| +......++...++...|.++...|++++|...|+..|+.+|+|...|..|..++....
T Consensus 13 il~e~g~~~~AL~~L-----~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 13 ILEEAGDYEEALEHL-----EKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHCCCHHHHHHHH-----HhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 345678999999987 33445568888999999999999999999999999999999999999999999984433
Q ss_pred ----ChHHHHHHHHHHhcCCCCCCChHHHHHH-------------------------------HHHHhcCCCCHHHHHHH
Q 013299 210 ----EDLVALNLLRTLLSGSEDPKCLPALLIA-------------------------------SKICGEYPDLAEEGATF 254 (446)
Q Consensus 210 ----~~~eA~~~~~~al~~~~~P~~~~a~~~~-------------------------------~~~~~~~~~~~~eA~~~ 254 (446)
..+.-...|++.. ...|....+...- ....+....+.+--...
T Consensus 88 ~~~~~~~~~~~~y~~l~--~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELA--EKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHH--HhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 4566678888777 6667643322111 01111111111111111
Q ss_pred HHHHHHHcCC------------CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013299 255 ASRALECLGD------------GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 255 ~~~al~~~~~------------~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
+...+..... .++.....+++.++..| ...|++++|+++.++|+ +..|..++.++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy-----------d~~g~~~~Al~~Id~aI-~htPt~~ely~~ 233 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY-----------DYLGDYEKALEYIDKAI-EHTPTLVELYMT 233 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH-----------HHhCCHHHHHHHHHHHH-hcCCCcHHHHHH
Confidence 1111111000 00011112334455555 34578999999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--CCCCc----HHHHHH--H
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--GKWEQ----GELLRT--K 394 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~----~~~~~~--~ 394 (446)
.|.++...|++++|...++.|-.+|+.|. -.-...+-.+.+.|+.++|...+....+.+ |. .+ -.+||. -
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~-~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLADR-YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL-SNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChhhH-HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc-cCHHHHHHHHHHHHH
Confidence 99999999999999999999999999983 555556777788999999999998887654 31 11 124554 4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 395 AKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 395 a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
|.++.++|++..|+..|..+.++..+
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999888654
No 95
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=3.2e-13 Score=124.10 Aligned_cols=108 Identities=12% Similarity=0.086 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
+.++|++|+..|.+|| +++|+|+-.|.+.+.+|.++|.++.|++.++.|+.+||.+ +.+|..||.++..+|+|++|+.
T Consensus 93 ~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHccCcHHHHHH
Confidence 4578999999999999 9999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
.|++||+++| ++...+-++..+..++++.+
T Consensus 171 aykKaLeldP--~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 171 AYKKALELDP--DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhhhccCC--CcHHHHHHHHHHHHHhcCCC
Confidence 9999999999 88888888888888877776
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=2.7e-11 Score=123.62 Aligned_cols=248 Identities=16% Similarity=0.103 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
+++......++...|++++|++.+++.-...+|.....-..|.++..+|++++|...|+..| ..||+|...+..+...
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li--~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI--DRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHH
Confidence 45666777889999999999999999999999999999999999999999999999999999 8999999866554433
Q ss_pred Hhc----CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchh-------Hhhhh--hhhchH----------HHHHH
Q 013299 241 CGE----YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISL-------SAQSK--VAITDF----------DRATR 297 (446)
Q Consensus 241 ~~~----~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~-------~~~~~--~~~~~~----------~~~~~ 297 (446)
... ..+..+.-...|++.-+..|....+..--..+.-|.-+ ..... -.++-+ .+..-
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 211 12346677788887776554322110000000001111 11000 011110 11112
Q ss_pred HHHHHHHHHHHHHhhC------------CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 298 QAKALQALVSAARSTN------------MRDLS--ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~------------P~~~~--a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
..+-+..|...+ +.. |.... +++.++..|...|++++|+.++++|+...|.. .+.++..|.|+.
T Consensus 162 i~~l~~~~~~~l-~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSL-ESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhh-cccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence 223333333333 221 12222 45889999999999999999999999999999 599999999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
..|++++|..+++.|-.+++ .+--+-..-+..+++.|++++|.+.+..-
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 99999999999999999999 66555566678889999999999887643
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.46 E-value=5.1e-12 Score=131.07 Aligned_cols=229 Identities=15% Similarity=0.055 Sum_probs=194.3
Q ss_pred hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013299 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (446)
Q Consensus 173 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (446)
.+++...|...|-+++.++|....+|-.||..|...-+...|..+|++|- .+||.+..+.-..+..+- ....+++|.
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAF--eLDatdaeaaaa~adtya-e~~~we~a~ 546 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAF--ELDATDAEAAAASADTYA-EESTWEEAF 546 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhhhhHHHHHHHhh-ccccHHHHH
Confidence 34568889999999999999999999999999999999999999999999 999999998877777654 467888998
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 013299 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK 332 (446)
Q Consensus 253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~ 332 (446)
...-++-+..+ .......|..+|..|... +++-+|+..|+.++ +.+|+|.+.|..+|.+|...|+
T Consensus 547 ~I~l~~~qka~---a~~~k~nW~~rG~yyLea-----------~n~h~aV~~fQsAL-R~dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 547 EICLRAAQKAP---AFACKENWVQRGPYYLEA-----------HNLHGAVCEFQSAL-RTDPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHHHhhhch---HHHHHhhhhhccccccCc-----------cchhhHHHHHHHHh-cCCchhHHHHHHHHHHHHhcCc
Confidence 88666655332 223355677789888664 45789999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHHHHhCCHHHH
Q 013299 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-----EQGELLRTKAKVQLVQGQLKGA 407 (446)
Q Consensus 333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~~~~a~~~~~~g~~~eA 407 (446)
+..|++.|.+|..++|.+ .-+.+..+.+....|+|++|++.+...+....++ +-.+.+...+..+...|-...|
T Consensus 612 y~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ka 690 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKA 690 (1238)
T ss_pred eehHHHhhhhhHhcCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999 6999999999999999999999999888665421 3466777788888888888888
Q ss_pred HHHHHHHHHHHhh
Q 013299 408 VETYTHLLAALQV 420 (446)
Q Consensus 408 ~~~~~~~l~l~~~ 420 (446)
...+++.++....
T Consensus 691 vd~~eksie~f~~ 703 (1238)
T KOG1127|consen 691 VDFFEKSIESFIV 703 (1238)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888776643
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.44 E-value=2.4e-12 Score=108.84 Aligned_cols=118 Identities=18% Similarity=0.084 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013299 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~ 333 (446)
.++++++. +|+. ..+.+.+|.++... +++++|+..|++++ ..+|+++.+++++|.++..+|++
T Consensus 5 ~~~~~l~~-~p~~----~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 5 TLKDLLGL-DSEQ----LEQIYALAYNLYQQ-----------GRYDEALKLFQLLA-AYDPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hHHHHHcC-Chhh----HHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHH
Confidence 45666663 3322 34566677766543 56899999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
++|+..+++++.++|+++ ..++.+|.++...|++++|+.+++++++.+| ++....
T Consensus 68 ~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~ 122 (135)
T TIGR02552 68 EEAIDAYALAAALDPDDP-RPYFHAAECLLALGEPESALKALDLAIEICG--ENPEYS 122 (135)
T ss_pred HHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--ccchHH
Confidence 999999999999999995 9999999999999999999999999999999 665543
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=8.3e-10 Score=122.70 Aligned_cols=312 Identities=15% Similarity=0.028 Sum_probs=209.6
Q ss_pred hHHHHHHhCChHHHHHHHHHHhCCCCCC----ChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013299 69 LPELWKLADAPRETIMSYRRALLPCWNL----DAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (446)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~al~~~~~~----~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~ 144 (446)
.+.++...|++++|...++.+....... ++.....+....+ .++...|++++|...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a--------------------~~~~~~g~~~~A~~~ 474 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA--------------------QVAINDGDPEEAERL 474 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH--------------------HHHHhCCCHHHHHHH
Confidence 3456678899999999999887641110 1111000111111 123457789999887
Q ss_pred HHHHHHHHHhhcCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC------cHHHHHHHHHHHHHCCChHH
Q 013299 145 LMILLRKVALKRIEWD-----PSILDHLSFAFSIAGDLSSLATQIEELLPGIIN------RKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 145 l~~~~~~~~l~~~p~~-----~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~e 213 (446)
+. .++...|.. ..+...+|.++...|++++|...+++++..... ...++.++|.++...|++++
T Consensus 475 ~~-----~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~ 549 (903)
T PRK04841 475 AE-----LALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQA 549 (903)
T ss_pred HH-----HHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 63 333323332 235678899999999999999999999865322 12456788999999999999
Q ss_pred HHHHHHHHhcCCCC-----CC---ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 214 ALNLLRTLLSGSED-----PK---CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 214 A~~~~~~al~~~~~-----P~---~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
|...+++++ ... +. ....+..++.+++. .|++++|...+++++.............++..+|.++..
T Consensus 550 A~~~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-- 624 (903)
T PRK04841 550 AYETQEKAF--QLIEEQHLEQLPMHEFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA-- 624 (903)
T ss_pred HHHHHHHHH--HHHHHhccccccHHHHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH--
Confidence 999999988 431 11 12223345555555 599999999999998864322122234455556666644
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHH---H-HHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRD---LSILY---R-LSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGW 355 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~---~-lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~ 355 (446)
.|++++|...++++. .+.+.. ..... . ....+...|+.+.|...+.......+..+ ...+
T Consensus 625 ---------~G~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 625 ---------RGDLDNARRYLNRLE-NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred ---------cCCHHHHHHHHHHHH-HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 467899999999997 664332 11111 1 22444568999999999888765433321 0125
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..+|.++..+|++++|+..+++++..... .+...++..+|.++...|+.++|...+++++++...
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 68899999999999999999999976321 023457788999999999999999999999998754
No 100
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=1e-12 Score=120.86 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
-+-.-|.-+++.++|++|+..|.+||.++|.++ ..|++.|.+|.++|.|+.|++.++.||.++| .++.+|-.+|.++
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~ 159 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-VYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHH
Confidence 344668888899999999999999999999995 9999999999999999999999999999999 8999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
..+|++++|++.|+++|+|.|++.
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcH
Confidence 999999999999999999999876
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.2e-10 Score=102.87 Aligned_cols=180 Identities=17% Similarity=0.032 Sum_probs=151.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
+-=.++..+..+....|+.+-|..|+.+.-+.-|++...--..|..+-..|++++|++.|+..| .-||.|...+-...
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL--~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLL--EDDPTDTVIRKRKL 127 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHh--ccCcchhHHHHHHH
Confidence 3334666888899999999999999999888889999999999999999999999999999999 89999988776544
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
.+ ...+|+.-+||..+...++..+.| ..+|..++.+|... +++++|.-+|++.+ -+.|.++.
T Consensus 128 Ai-lka~GK~l~aIk~ln~YL~~F~~D-----~EAW~eLaeiY~~~-----------~~f~kA~fClEE~l-l~~P~n~l 189 (289)
T KOG3060|consen 128 AI-LKAQGKNLEAIKELNEYLDKFMND-----QEAWHELAEIYLSE-----------GDFEKAAFCLEELL-LIQPFNPL 189 (289)
T ss_pred HH-HHHcCCcHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhH-----------hHHHHHHHHHHHHH-HcCCCcHH
Confidence 34 344677779999999999877665 57899999888765 56899999999999 99999999
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013299 319 ILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMA 359 (446)
Q Consensus 319 a~~~lg~~~~~~~---~~~~A~~~~~~al~l~P~~~~~~~~~la 359 (446)
.+-.+|.+++-+| +++-|.++|.++++++|.+ ..+|+.+-
T Consensus 190 ~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~ 232 (289)
T KOG3060|consen 190 YFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIY 232 (289)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHH
Confidence 9999998888765 6777999999999999976 57776543
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.39 E-value=2.5e-11 Score=129.19 Aligned_cols=232 Identities=14% Similarity=0.122 Sum_probs=171.9
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---------------
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK--------------- 195 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~--------------- 195 (446)
.+..++++++|+... +..++..|+...+|+.+|.++.+.+++..+... +++..-+.+.
T Consensus 40 ~~~~~~~~deai~i~-----~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~ 112 (906)
T PRK14720 40 AYKSENLTDEAKDIC-----EEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLY 112 (906)
T ss_pred HHHhcCCHHHHHHHH-----HHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhh
Confidence 344678899999875 567888999999999999999999998888766 7777766666
Q ss_pred ----HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 196 ----ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 196 ----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
.+++.||.||-.+|++++|...|+++| +.+|+|+.++.++|..+-.. +.++|+.++++|++..
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L--~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~~--------- 179 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLV--KADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYRF--------- 179 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH---------
Confidence 999999999999999999999999999 99999999999888776554 8999999999999841
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH--------H------------HHHHHcC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL--------S------------LEYAEQR 331 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l--------g------------~~~~~~~ 331 (446)
...+++.++.+...+.+ +.+|++.+.++.+ | ..|...+
T Consensus 180 ---------------------i~~kq~~~~~e~W~k~~-~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 180 ---------------------IKKKQYVGIEEIWSKLV-HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred ---------------------HhhhcchHHHHHHHHHH-hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 01246788999999999 9999998875433 3 3445556
Q ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013299 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
++++++..++.++..+|++ ..+...++.+|. +.|.+ -..++..++... +-.....+..++..|
T Consensus 238 ~~~~~i~iLK~iL~~~~~n-~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~-------------l~~~~~~~~~~i~~f 300 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKN-NKAREELIRFYK--EKYKD-HSLLEDYLKMSD-------------IGNNRKPVKDCIADF 300 (906)
T ss_pred hhhHHHHHHHHHHhcCCcc-hhhHHHHHHHHH--HHccC-cchHHHHHHHhc-------------cccCCccHHHHHHHH
Confidence 6777777777777777776 366666666654 44443 333333333321 111123455667777
Q ss_pred HHHHHHHhhh
Q 013299 412 THLLAALQVQ 421 (446)
Q Consensus 412 ~~~l~l~~~~ 421 (446)
++.+.+.+++
T Consensus 301 ek~i~f~~G~ 310 (906)
T PRK14720 301 EKNIVFDTGN 310 (906)
T ss_pred HHHeeecCCC
Confidence 7766666653
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.33 E-value=2.8e-11 Score=115.03 Aligned_cols=231 Identities=14% Similarity=-0.005 Sum_probs=140.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCC------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGI------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
-+||.++...|.|++|+.++.+-+.+. -....++|+||.+|...|+--. -..|.+..+...-.
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----------~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----------LEAPEEKGAFNAEV 167 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----------CCChhhcccccHHH
Confidence 456666666666766666666655442 1234678888888888875311 12332221111000
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC-
Q 013299 239 KICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD- 316 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~- 316 (446)
...++.|+++|..-++.... .+......++-+||..|.-. |+++.|+..-+.-+ ++....
T Consensus 168 ------~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL-----------Gdf~~ai~~H~~RL-~ia~efG 229 (639)
T KOG1130|consen 168 ------TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL-----------GDFDQAIHFHKLRL-EIAQEFG 229 (639)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee-----------ccHHHHHHHHHHHH-HHHHHhh
Confidence 01233444555444443211 00111234556666666543 45666666655555 443322
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC----CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC---
Q 013299 317 -----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG----GS-NLKGWLLMARILSAQKRYEDAETILNAALDQTG--- 383 (446)
Q Consensus 317 -----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P----~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--- 383 (446)
-.++.+||.++.-.|+++.|+++|++++.+.- .. .+...+.||..|....+++.||.+..+=+.+..
T Consensus 230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24777889999999999999999888765532 11 125567888889889999999998887665432
Q ss_pred -CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 384 -KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 384 -~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
.-....++|.+|..+...|..+.|+...++.+++..+--+.
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~ 351 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDT 351 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 00346778888999999999999988888888877653333
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.32 E-value=1.9e-11 Score=103.54 Aligned_cols=107 Identities=11% Similarity=-0.067 Sum_probs=98.5
Q ss_pred hhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 154 LKRI-EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 154 l~~~-p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
.... ++..+..+.+|..+...|++++|...|+-+..++|.++..|++||.++..+|+|++|+..|.+++ .++|+++.
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~--~L~~ddp~ 104 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA--QIKIDAPQ 104 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH--hcCCCCch
Confidence 3455 77888899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013299 233 ALLIASKICGEYPDLAEEGATFASRALECLG 263 (446)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 263 (446)
++.+.| +|+...|+.+.|...|+.||....
T Consensus 105 ~~~~ag-~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAA-ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 998765 567778999999999999999764
No 105
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.9e-09 Score=99.72 Aligned_cols=327 Identities=17% Similarity=0.080 Sum_probs=207.3
Q ss_pred HHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 13 IFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 13 ~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
-...|-|++.+|.|++|...|..+-+.. +++. ++ .-.|+.+++-.|.+.+|..+-.++-+.
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~~~-----el-------~vnLAcc~FyLg~Y~eA~~~~~ka~k~ 120 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKD-------DAPA-----EL-------GVNLACCKFYLGQYIEAKSIAEKAPKT 120 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccC-------CCCc-----cc-------chhHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3457899999999999999999876531 2221 12 223457788899999999888777553
Q ss_pred CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 93 CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFS 172 (446)
Q Consensus 93 ~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~ 172 (446)
|-. .++...++.- .|+ |+-+..+...+. +..+-...|+.+..
T Consensus 121 -----pL~-~RLlfhlahk-----------------------lnd-Ek~~~~fh~~Lq--------D~~EdqLSLAsvhY 162 (557)
T KOG3785|consen 121 -----PLC-IRLLFHLAHK-----------------------LND-EKRILTFHSSLQ--------DTLEDQLSLASVHY 162 (557)
T ss_pred -----hHH-HHHHHHHHHH-----------------------hCc-HHHHHHHHHHHh--------hhHHHHHhHHHHHH
Confidence 211 1222222211 111 222222211111 11222345566666
Q ss_pred hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC-CCCHHHH
Q 013299 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY-PDLAEEG 251 (446)
Q Consensus 173 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~-~~~~~eA 251 (446)
..-.|++|++.|.+++.-+|+.......++.||+.+.=|+-+...+.--| +-.|+.+-+....+...++. .|+..++
T Consensus 163 mR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL--~q~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL--RQFPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH--HhCCCcHHHHHHHHHHHhhhhccchhHH
Confidence 66778888888888888888888888888888888888888888888888 77888887766555443331 1222111
Q ss_pred H----------------HHHH----------HHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHH
Q 013299 252 A----------------TFAS----------RALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQAL 305 (446)
Q Consensus 252 ~----------------~~~~----------~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~ 305 (446)
. ..++ .|++.+|+-- ...+.+..+|.+.|..+ ++..+|+...
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~-~~IPEARlNL~iYyL~q-----------~dVqeA~~L~ 308 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM-KHIPEARLNLIIYYLNQ-----------NDVQEAISLC 308 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH-hhChHhhhhheeeeccc-----------ccHHHHHHHH
Confidence 1 1111 1233222210 11245566666665443 5678888777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML---LKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a---l~l~P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
+ .++|..|.-+.-.|.+....|+--...++.+-| +.+-..+ .......+|..++...+|++.+.++..
T Consensus 309 K----dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS 384 (557)
T KOG3785|consen 309 K----DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS 384 (557)
T ss_pred h----hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 789999998888888888877654444433332 3332221 125677788888888999999988887
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
.-.-.- ++-...+++|.+....|.+.+|.+.|-++-.
T Consensus 385 i~sYF~--NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 385 IESYFT--NDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHhc--CcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 777666 5557778899999999999999988866543
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.31 E-value=2.6e-11 Score=119.61 Aligned_cols=103 Identities=11% Similarity=0.061 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.+++++|+..|++++ +++|+++.+++++|.++..+|++++|+..+++++.++|++ ..+|+.+|.++..+|+|++|+..
T Consensus 15 ~~~~~~Ai~~~~~Al-~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAI-DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCCHHHHHHH
Confidence 467899999999999 9999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
|+++++++| ++..+...++.+...+
T Consensus 93 ~~~al~l~P--~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 93 LEKGASLAP--GDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 999999999 8888888877776555
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2e-08 Score=99.91 Aligned_cols=350 Identities=16% Similarity=0.071 Sum_probs=212.8
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
++++---.-+.+.|+|++|...+.++|... |+.. .+++.=-.++.+.++|++|+..-++-.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--------pdd~-----------~a~~cKvValIq~~ky~~ALk~ikk~~ 73 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--------PDDE-----------DAIRCKVVALIQLDKYEDALKLIKKNG 73 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--------CCcH-----------hhHhhhHhhhhhhhHHHHHHHHHHhcc
Confidence 445555556778899999999999998763 3321 223322245678888888874433322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
.. +..+... +-.+ -++...|..++|+..+ + ..++.+.......|.+
T Consensus 74 ~~----~~~~~~~----fEKA------------------Yc~Yrlnk~Dealk~~-----~---~~~~~~~~ll~L~AQv 119 (652)
T KOG2376|consen 74 AL----LVINSFF----FEKA------------------YCEYRLNKLDEALKTL-----K---GLDRLDDKLLELRAQV 119 (652)
T ss_pred hh----hhcchhh----HHHH------------------HHHHHcccHHHHHHHH-----h---cccccchHHHHHHHHH
Confidence 21 1111100 1111 1233456777777764 1 2345556677778888
Q ss_pred HHhcCCHHHHHHHHHhhCCC------------------------------CCC-cHHHHHHHHHHHHHCCChHHHHHHHH
Q 013299 171 FSIAGDLSSLATQIEELLPG------------------------------IIN-RKERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~------------------------------~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
+.+.|+|++|...|+..++- .|+ .-+.+||.+.++...|+|.+|++.++
T Consensus 120 lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 120 LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 88888888888777776433 333 44678999999999999999999999
Q ss_pred HHhcC------CCCCC--ChH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 220 TLLSG------SEDPK--CLP-----ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 220 ~al~~------~~~P~--~~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
++++. .-+-+ .+. ..+.++.+ ++..|+.+||...|...|+..+.+ ++..+.+-++|-.+-....-
T Consensus 200 kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV-lQ~~Gqt~ea~~iy~~~i~~~~~D-~~~~Av~~NNLva~~~d~~~ 277 (652)
T KOG2376|consen 200 KALRICREKLEDEDTNEEEIEEELNPIRVQLAYV-LQLQGQTAEASSIYVDIIKRNPAD-EPSLAVAVNNLVALSKDQNY 277 (652)
T ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhcCCC-chHHHHHhcchhhhcccccc
Confidence 99200 11111 111 23344444 455799999999999999965544 43444455554322111100
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMR----------DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 356 (446)
.+ | .++..++... ...++ --..+.|.+.+.+-.+.-+.+.+...+.-...|..- .-..
T Consensus 278 ---~d----~---~~l~~k~~~~-~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~-~~~l 345 (652)
T KOG2376|consen 278 ---FD----G---DLLKSKKSQV-FKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESL-FPIL 345 (652)
T ss_pred ---Cc----h---HHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHH-HHHH
Confidence 00 0 1222222222 11111 123456777777777777766666554444444431 2223
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCc
Q 013299 357 LMARILSAQKRYEDAETILNAALDQTGKWEQ-GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (446)
Q Consensus 357 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~ 429 (446)
...........+..|...+...-+..| ++ ..+.+.++.+...+|+++.|++.+...++.|......++--|
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~~p--~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P 417 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADGHP--EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP 417 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh
Confidence 334444444578999999999999999 55 778889999999999999999999987777766555444333
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=4.2e-09 Score=117.13 Aligned_cols=325 Identities=14% Similarity=0.007 Sum_probs=208.6
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCC
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~ 93 (446)
...+.++...|++++|...+..+.+..+...+...+. . ...+...++.++...|++++|...+++++...
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~-------~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGT-------L---QAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchh-------H---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 4567777889999999999988876532110000010 1 12233456788899999999999999999851
Q ss_pred CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHH
Q 013299 94 WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW--DPSILDHLSFAF 171 (446)
Q Consensus 94 ~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~--~~~~~~~lg~~l 171 (446)
+..++.........++. .+...|++++|...+..+... .....+. ...++..+|.++
T Consensus 483 ~~~~~~~~~~a~~~lg~--------------------~~~~~G~~~~A~~~~~~al~~-~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 483 PLTWYYSRIVATSVLGE--------------------VHHCKGELARALAMMQQTEQM-ARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred CCccHHHHHHHHHHHHH--------------------HHHHcCCHHHHHHHHHHHHHH-HhhhcchHHHHHHHHHHHHHH
Confidence 11111000001111222 234578899998876443211 1111111 124567889999
Q ss_pred HhcCCHHHHHHHHHhhCCCCC--------CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC----C-ChHHHHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGII--------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP----K-CLPALLIAS 238 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P----~-~~~a~~~~~ 238 (446)
...|++++|.+.+++++.+.. .....+..+|.+++..|++++|...+++++ .... . ...++..++
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL--EVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH--HhhhccCchHHHHHHHHHH
Confidence 999999999999999887521 123346678999999999999999999998 4322 1 233334445
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH-HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANC-LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~-~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
.+. ...|++++|...+.++................. .++..+. ...|..++|...+.... ...+...
T Consensus 620 ~~~-~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~g~~~~A~~~l~~~~-~~~~~~~ 687 (903)
T PRK04841 620 KIS-LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW----------QMTGDKEAAANWLRQAP-KPEFANN 687 (903)
T ss_pred HHH-HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH----------HHCCCHHHHHHHHHhcC-CCCCccc
Confidence 554 457899999999999987533211000000000 0111110 11356677888877766 5433332
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 318 S----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 318 ~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
. .+..+|.++...|++++|+..+++++...... ...++..+|.++..+|+.++|...+.+|+++..
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 2 24678999999999999999999999863221 135788899999999999999999999999875
No 109
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=6.2e-10 Score=110.42 Aligned_cols=219 Identities=17% Similarity=0.106 Sum_probs=161.8
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...+++++|+... ..++...|+++++....-.++.+.++|++|+...++-....-.+... +..+-|++++++
T Consensus 21 ~~~~~~e~e~a~k~~-----~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTA-----NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNK 94 (652)
T ss_pred HhccchHHHHHHHHH-----HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHccc
Confidence 345678999998864 67888999999999999999999999999985554443322222222 688999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH-hhchhHhhhhhhh
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL-LGISLSAQSKVAI 289 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~-lg~~~~~~~~~~~ 289 (446)
.++|+..++ .+ ++.+..+....+.++|+ ++++++|...|+..++...++.+ .....+ ++.
T Consensus 95 ~Dealk~~~-~~----~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d---~~~r~nl~a~---------- 155 (652)
T KOG2376|consen 95 LDEALKTLK-GL----DRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQD---EERRANLLAV---------- 155 (652)
T ss_pred HHHHHHHHh-cc----cccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHH---HHHHHHHHHH----------
Confidence 999999999 33 55556566667888887 68999999999999884333211 111111 111
Q ss_pred chHHHHHHHHHHHHH-HHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCC---------HH
Q 013299 290 TDFDRATRQAKALQA-LVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGSN---------LK 353 (446)
Q Consensus 290 ~~~~~~~~~~eAl~~-~~~al~~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~---------~~ 353 (446)
..+... ..+.+ ...|. +.+.+||.+.++...|+|.+|++.+++|+.+ .-++. ..
T Consensus 156 ---------~a~l~~~~~q~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 156 ---------AAALQVQLLQSV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred ---------HHhhhHHHHHhc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 111111 45555 56666 6789999999999999999999999999432 11110 14
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
+...|+.++..+|+.+||...|...++.+|.
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 6778999999999999999999999999883
No 110
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.29 E-value=2.1e-11 Score=115.78 Aligned_cols=258 Identities=14% Similarity=0.035 Sum_probs=189.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHHHCCChHHHHHHHH------HHhcCCCCCCChHHHH
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLR------TLLSGSEDPKCLPALL 235 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~------~al~~~~~P~~~~a~~ 235 (446)
.-|.-++++|+....+..|+.|++...++. .+|.+||.+|.-+++|++|++.-. +.+ .-.-....+.-
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssg 99 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccc
Confidence 346778899999999999999999987764 468889999999999999988643 333 11111222233
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhc---------hHHHHHHHHHHHHHH
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAIT---------DFDRATRQAKALQAL 305 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~---------~~~~~~~~~eAl~~~ 305 (446)
++|.+ ++.+|.+++|+.+..|-+..... .+....+.+++++|.+|..+|+-... ..+-...++.|++.|
T Consensus 100 NLGNt-lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 100 NLGNT-LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred cccch-hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 34444 55689999999999887764321 22345689999999999998864321 113344566777777
Q ss_pred HHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHH
Q 013299 306 VSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 306 ~~al~~~~P~~~------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
..-+ ++-..-- .++-+||..|+-.|+++.|+..-+.-+.+..... -.++.++|.++.-+|+++.|+++
T Consensus 179 ~eNL-~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 179 MENL-ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHH-HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 7766 6544322 3567999999999999999998888777764421 14788999999999999999999
Q ss_pred HHHHHhhc----CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccC
Q 013299 375 LNAALDQT----GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (446)
Q Consensus 375 ~~~al~~~----p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~ 427 (446)
|++.+.+. .+..-....|.+|..|.-..+++.|+.++.+=|.|.+.--+-+|+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99887542 211235567899999999999999999999999999886665554
No 111
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.2e-07 Score=92.10 Aligned_cols=350 Identities=11% Similarity=0.036 Sum_probs=242.8
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
..|..-|..-++-|...-|...|.++++.+- + . ...+ ..+...+..-..+..++.|-.+|+-+|
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~~~----~----d-----~~~e---~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEFLG----D----D-----EEAE---ILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh----h----H-----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777788888888877530 0 0 1111 222223344556778888888888888
Q ss_pred CCCCCCChHH-HHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 91 LPCWNLDAET-TAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 91 ~~~~~~~~~~-~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
.. -|.+ +..+...+..+.-. |-...-++++|..-....++..++.+|.|-++|+..-.
T Consensus 272 d~----~pk~raeeL~k~~~~fEKq-----------------fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylr 330 (677)
T KOG1915|consen 272 DH----IPKGRAEELYKKYTAFEKQ-----------------FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLR 330 (677)
T ss_pred Hh----cCcccHHHHHHHHHHHHHH-----------------hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHH
Confidence 76 2222 22232333222111 11223356666543333456778899999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHH---------HHHHHHHH-HHHCCChHHHHHHHHHHhcCCCCCC----ChHHHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKE---------RYHILALC-YYGAGEDLVALNLLRTLLSGSEDPK----CLPALL 235 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~-~~~~g~~~eA~~~~~~al~~~~~P~----~~~a~~ 235 (446)
.....|+.+.-.+.|++||.--|.-.+ .|.+.+.- -....+.+.+...|+.+| .+-|. ....++
T Consensus 331 L~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l--~lIPHkkFtFaKiWl 408 (677)
T KOG1915|consen 331 LEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL--DLIPHKKFTFAKIWL 408 (677)
T ss_pred HHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhcCcccchHHHHHH
Confidence 989999999999999999998887554 23333321 124688999999999999 88886 344566
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
+.+..-.+ +.+...|...+-.||-..|.+. .-.+|.-+- ..++.++.....|++-+ +..|.
T Consensus 409 myA~feIR-q~~l~~ARkiLG~AIG~cPK~K---lFk~YIelE--------------lqL~efDRcRkLYEkfl-e~~Pe 469 (677)
T KOG1915|consen 409 MYAQFEIR-QLNLTGARKILGNAIGKCPKDK---LFKGYIELE--------------LQLREFDRCRKLYEKFL-EFSPE 469 (677)
T ss_pred HHHHHHHH-HcccHHHHHHHHHHhccCCchh---HHHHHHHHH--------------HHHhhHHHHHHHHHHHH-hcChH
Confidence 55655555 4567889999988988766542 112222222 23567899999999999 99999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 394 (446)
|..+|...|.+-...|+.+.|...|.-|+....-+ |...|-..-..-...|.++.|.+.|++.|+..+ +...|...
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~---h~kvWisF 546 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ---HVKVWISF 546 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc---cchHHHhH
Confidence 99999999999999999999999999998854333 323566666677889999999999999999988 55577777
Q ss_pred HHHHH-----HhC-----------CHHHHHHHHHHHHHHHhhh
Q 013299 395 AKVQL-----VQG-----------QLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 395 a~~~~-----~~g-----------~~~eA~~~~~~~l~l~~~~ 421 (446)
|.... ..| .+..|...|+++....++.
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 66555 445 5667788888877766543
No 112
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.27 E-value=7.1e-11 Score=97.10 Aligned_cols=109 Identities=16% Similarity=0.075 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRT 393 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~~ 393 (446)
+++++.+|..+..+|++++|+..|++++..+|+++ ..+++.+|.++...|++++|+.++++++..+|+. ....+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 56789999999999999999999999999998762 2688899999999999999999999999998821 12678999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
+|.++..+|++++|+..++++++..|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999987655443
No 113
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=1.9e-08 Score=95.91 Aligned_cols=268 Identities=14% Similarity=-0.016 Sum_probs=191.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHHHCCCh
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILD-HLSFAFSIAGDLSSLATQIEELLPGII-NRKERYHILALCYYGAGED 211 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~-~lg~~l~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~ 211 (446)
..|++.+|..++. + . +...+.|...+ .-+.+-.++|+.+.|=.++.++-+..+ +.......++.++...|++
T Consensus 96 ~eG~~~qAEkl~~----r-n-ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 96 FEGDFQQAEKLLR----R-N-AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred hcCcHHHHHHHHH----H-h-hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 4688999987652 1 1 22334444444 445677889999999999999999843 3456778889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc---hhhhHHHHHh-----------
Q 013299 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD---QMESTANCLL----------- 277 (446)
Q Consensus 212 ~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~---~~~~~a~~~l----------- 277 (446)
+.|.....+++ ...|.++.++.....+ +.+.|.+.+......+.-+.---+++ .+...++..+
T Consensus 170 ~aA~~~v~~ll--~~~pr~~~vlrLa~r~-y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 170 PAARENVDQLL--EMTPRHPEVLRLALRA-YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred hhHHHHHHHHH--HhCcCChHHHHHHHHH-HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999 8999999988765555 55578888877777665442111111 1111222210
Q ss_pred h--chhHhhhhhhh----------chHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 278 G--ISLSAQSKVAI----------TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 278 g--~~~~~~~~~~~----------~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
| .++..+.+.-. ....+.|.+++|.+..+.++ +..-+.- ..-.++ ...-++.+.=++..++.++
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChh-HHHHHh--hcCCCCchHHHHHHHHHHH
Confidence 0 01100000000 01245688899999999999 5543332 111222 1245788888999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
..|++| ..+..||.++.+.+.|.+|..+++.|++..| +..-+..+|.++.++|+..+|-+.++.++-+.
T Consensus 323 ~h~~~p-~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 323 QHPEDP-LLLSTLGRLALKNKLWGKASEALEAALKLRP---SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hCCCCh-hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999996 9999999999999999999999999999999 45667789999999999999999999999654
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=9.3e-10 Score=107.44 Aligned_cols=126 Identities=23% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|....++|..+..++..|.+++|+..++..+ +..|+|+..+-..+.+++. .|+.++|++.+++++...|.. .
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~--~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~-----~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLI--AAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNS-----P 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCc-----c
Confidence 8899999999999999999999999999999 8999999887777766554 455555555555555533221 2
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
..+.++|.+|.+. |+..+|+..++..+ .-+|+|+..|..||.+|..+|+..+|.
T Consensus 375 ~l~~~~a~all~~-----------g~~~eai~~L~~~~-~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 375 LLQLNLAQALLKG-----------GKPQEAIRILNRYL-FNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHHHhc-----------CChHHHHHHHHHHh-hcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 3445555555443 23445555555555 555555555555555555555544333
No 115
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.26 E-value=3.9e-08 Score=93.84 Aligned_cols=296 Identities=16% Similarity=0.041 Sum_probs=196.3
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+....+.|..-...|+|.+|+....+.-+..| .| .-++...+..-.+.|+.+.|=.+..++
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e------~p-------------~l~~l~aA~AA~qrgd~~~an~yL~ea 144 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGE------QP-------------VLAYLLAAEAAQQRGDEDRANRYLAEA 144 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc------ch-------------HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34455678888888999999887666333210 11 123333446667899999999999998
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
-+.++ ++.-. .....+. +...+++++.|...+ +..++..|.++.+.-..-.
T Consensus 145 ae~~~--~~~l~--v~ltrar--------------------lll~~~d~~aA~~~v-----~~ll~~~pr~~~vlrLa~r 195 (400)
T COG3071 145 AELAG--DDTLA--VELTRAR--------------------LLLNRRDYPAARENV-----DQLLEMTPRHPEVLRLALR 195 (400)
T ss_pred hccCC--CchHH--HHHHHHH--------------------HHHhCCCchhHHHHH-----HHHHHhCcCChHHHHHHHH
Confidence 88732 21111 1111122 233456677776543 5567888999999999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHHHH--HHHHCCChHHHHH---HHH---HHhcCCCCCCChHHHHHHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRK---ERYHILAL--CYYGAGEDLVALN---LLR---TLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~--~~~~~g~~~eA~~---~~~---~al~~~~~P~~~~a~~~~~ 238 (446)
+|...|++.+....+.+.-+..--+. .-+-+.+. ++.+.++-+.+.. ..+ +.+ +-+| ......+
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p---~l~~~~a 270 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDP---ELVVAYA 270 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcCh---hHHHHHH
Confidence 99999999988877766554432222 22222221 1222222222222 111 223 2333 3333222
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
..+.+.|..++|....+.+++..-+ ......++.. +.++..+=++..++.+ +.+|++|.
T Consensus 271 -~~li~l~~~~~A~~~i~~~Lk~~~D------~~L~~~~~~l-------------~~~d~~~l~k~~e~~l-~~h~~~p~ 329 (400)
T COG3071 271 -ERLIRLGDHDEAQEIIEDALKRQWD------PRLCRLIPRL-------------RPGDPEPLIKAAEKWL-KQHPEDPL 329 (400)
T ss_pred -HHHHHcCChHHHHHHHHHHHHhccC------hhHHHHHhhc-------------CCCCchHHHHHHHHHH-HhCCCChh
Confidence 3355689999999999999985322 1222222322 2345677788899999 99999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
.++.||.++.+.+.+.+|..+++.|++..|+. ..|..+|.++.++|+..+|.+..+.++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999983 88999999999999999999999999854
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.25 E-value=7.3e-11 Score=116.39 Aligned_cols=101 Identities=10% Similarity=-0.013 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
+...|..+...|++++|+..|++|++++|++ ..+|.++|.++..+|++++|+..+++++.++| +++.+++.+|.++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHH
Confidence 5566888899999999999999999999999 59999999999999999999999999999999 89999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 400 VQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 400 ~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.+|++++|+..|++++++.|++..
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999876544
No 117
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.5e-10 Score=107.41 Aligned_cols=121 Identities=21% Similarity=0.143 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC---HHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR---YEDAETI 374 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~---~~eA~~~ 374 (446)
.++-+.-++.-+ ..||+|++-|..||.+|..+|+++.|...|.+|+++.|+++ +.+..+|.+++.+.. -.+|...
T Consensus 138 ~~~l~a~Le~~L-~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~-~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHL-QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP-EILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCcccHHHHHH
Confidence 567778888999 99999999999999999999999999999999999999995 999999999987643 5689999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+++++.++| ++..+.+.+|..+.++|++.+|+..|+..|+..|-+.
T Consensus 216 l~~al~~D~--~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDP--ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999 9999999999999999999999999999999987543
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.7e-09 Score=97.18 Aligned_cols=183 Identities=16% Similarity=0.052 Sum_probs=148.5
Q ss_pred CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013299 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ 268 (446)
Q Consensus 189 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~ 268 (446)
...|+.-..+-+...+....|+.+-|..++++.. ...|+...+.-+.| +.++-.|++++|+++|+..++..|.+.
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~--~~fp~S~RV~~lka-m~lEa~~~~~~A~e~y~~lL~ddpt~~-- 120 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLR--DRFPGSKRVGKLKA-MLLEATGNYKEAIEYYESLLEDDPTDT-- 120 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HhCCCChhHHHHHH-HHHHHhhchhhHHHHHHHHhccCcchh--
Confidence 4567777777888888999999999999999988 66699888765444 456778999999999999999543331
Q ss_pred hhhHHHHHhhc-hhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 269 MESTANCLLGI-SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 269 ~~~~a~~~lg~-~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
+-.-.-. +... +|+.-+|++.+.+-+ +.-|+|+++|..++.+|...|++++|.-++++.+-++
T Consensus 121 ----v~~KRKlAilka-----------~GK~l~aIk~ln~YL-~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 121 ----VIRKRKLAILKA-----------QGKNLEAIKELNEYL-DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred ----HHHHHHHHHHHH-----------cCCcHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 1111111 1111 355669999999999 9999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 348 GGSNLKGWLLMARILSAQK---RYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 348 P~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
|-++ ..+..+|.+++-+| ++.-|..+|.++++++| .+..+++-+.
T Consensus 185 P~n~-l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~--~~~ral~GI~ 232 (289)
T KOG3060|consen 185 PFNP-LYFQRLAEVLYTQGGAENLELARKYYERALKLNP--KNLRALFGIY 232 (289)
T ss_pred CCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh--HhHHHHHHHH
Confidence 9995 88889999998876 46788999999999999 7877776443
No 119
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.23 E-value=2.8e-10 Score=100.22 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRD--LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~ 373 (446)
+..+...+.+.+ +.++.+ ..+++++|.++..+|++++|+..|++++.+.|++. ..+|.++|.++..+|++++|+.
T Consensus 15 ~~~~~~~l~~~~-~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRIL-PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhc-cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666666 666666 66779999999999999999999999999987642 2589999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHHHhh
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQL-------VQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~-------~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.+++++..+| ++...+.++|.++. .+|++++|+..+.+++..+..
T Consensus 94 ~~~~Al~~~~--~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 94 YYFQALERNP--FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHhCc--CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 9999999999 88888999999988 888988777777766665543
No 120
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=5e-11 Score=88.31 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhcC
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-RYEDAETILNAALDQTG 383 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p 383 (446)
++.+|+.+|.++...|++++|+.+|++++.++|++ +.+|+++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56777777777777777777777777777777777 477777777777777 67777777777777776
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=2.7e-10 Score=115.50 Aligned_cols=197 Identities=15% Similarity=0.103 Sum_probs=164.2
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|......-.+|.++...|-..+|+..|++.- ..+|. ..||...|+...|.....+-++ -+|+ +
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle--mw~~v---------i~CY~~lg~~~kaeei~~q~le-k~~d-----~ 457 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE--MWDPV---------ILCYLLLGQHGKAEEINRQELE-KDPD-----P 457 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH--HHHHH---------HHHHHHhcccchHHHHHHHHhc-CCCc-----c
Confidence 3344455669999999999999999999966 44441 2355556788889999988888 3444 5
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
..|..+|.+..+. ..+++|.+..+..- ..|.+.+|......++++++..+++.+++++|-.
T Consensus 458 ~lyc~LGDv~~d~-----------s~yEkawElsn~~s-------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq- 518 (777)
T KOG1128|consen 458 RLYCLLGDVLHDP-----------SLYEKAWELSNYIS-------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQ- 518 (777)
T ss_pred hhHHHhhhhccCh-----------HHHHHHHHHhhhhh-------HHHHHhhccccccchhHHHHHHHHHHHhhcCccc-
Confidence 7899999987553 34677777666555 4588899988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
...|+.+|.+..+.++++.|..+|.+++.+.| ++.++|.+++..+...|+..+|...+.++++.+.++..+|.
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P--d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP--DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC--CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 49999999999999999999999999999999 99999999999999999999999999999998855544443
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.21 E-value=8.3e-10 Score=105.36 Aligned_cols=202 Identities=14% Similarity=0.055 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN--RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
...+...++..+...++.+.++..++..+..... ++-...--|.++...|++++|+..+.+. ++.+.....
T Consensus 65 ~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~ 137 (290)
T PF04733_consen 65 ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALA 137 (290)
T ss_dssp CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHH
T ss_pred hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHH
Confidence 3445566666666556777788888776654433 4445555677777788888888766553 345555444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhH--hhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS--AQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~--~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
-.+++. .++++.|.+.++.+-+ ..++. ....++.++. ..| .+.+.+|.-.|++.. ...|.
T Consensus 138 Vqi~L~-~~R~dlA~k~l~~~~~-~~eD~------~l~qLa~awv~l~~g---------~e~~~~A~y~f~El~-~~~~~ 199 (290)
T PF04733_consen 138 VQILLK-MNRPDLAEKELKNMQQ-IDEDS------ILTQLAEAWVNLATG---------GEKYQDAFYIFEELS-DKFGS 199 (290)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHC-CSCCH------HHHHHHHHHHHHHHT---------TTCCCHHHHHHHHHH-CCS--
T ss_pred HHHHHH-cCCHHHHHHHHHHHHh-cCCcH------HHHHHHHHHHHHHhC---------chhHHHHHHHHHHHH-hccCC
Confidence 444444 7888888888887766 33321 2222222221 111 124678999999988 88888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHhhcCCCCcHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY-EDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~p~~~~~~ 389 (446)
++..++.++.++..+|++++|...+++|+..+|+++ .++.+++.+...+|+. +.+..++.+....+| +++-
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~-d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p--~h~~ 271 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP-DTLANLIVCSLHLGKPTEAAERYLSQLKQSNP--NHPL 271 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH-HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT--TSHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC--CChH
Confidence 999999999999999999999999999999999985 9999999998898988 556667777777888 6654
No 123
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3e-10 Score=105.37 Aligned_cols=124 Identities=22% Similarity=0.146 Sum_probs=108.3
Q ss_pred CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHH
Q 013299 176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFA 255 (446)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~ 255 (446)
..+..+.-++..+..+|++++.|..||.+|+.+|++..|...|.+|+ ++.|+++..+...+.+++.+.|.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~--rL~g~n~~~~~g~aeaL~~~a~~-------- 206 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL--RLAGDNPEILLGLAEALYYQAGQ-------- 206 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCC--------
Confidence 35677788899999999999999999999999999999999999999 99999999887666554432211
Q ss_pred HHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 013299 256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA 335 (446)
Q Consensus 256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~ 335 (446)
....++...|++++ .+||+|..+++.||..+.++|++.+
T Consensus 207 ----------------------------------------~~ta~a~~ll~~al-~~D~~~iral~lLA~~afe~g~~~~ 245 (287)
T COG4235 207 ----------------------------------------QMTAKARALLRQAL-ALDPANIRALSLLAFAAFEQGDYAE 245 (287)
T ss_pred ----------------------------------------cccHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHcccHHH
Confidence 12367889999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCC
Q 013299 336 AHYYAKMLLKLEGGS 350 (446)
Q Consensus 336 A~~~~~~al~l~P~~ 350 (446)
|....+..+.+.|.+
T Consensus 246 A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 246 AAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999999876
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.19 E-value=2.9e-10 Score=100.51 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+|..+.+++++|..+...|++++|+.+|++++.+.|+.+ ..++.++|.++..+|++++|+.++++++...| ++...
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~ 108 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSA 108 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHH
Confidence 345667889999999999999999999999999887642 36899999999999999999999999999999 88999
Q ss_pred HHHHHHHHHHhCC--------------HHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQ--------------LKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~--------------~~eA~~~~~~~l~l~~~~ 421 (446)
+..+|.++...|+ +++|++.+++++.+.|++
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999998887 456666666666666554
No 125
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.18 E-value=2.3e-10 Score=88.46 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+++.+|.++..+|++++|+..+++++...|++ ..++..+|.++...|++++|+.++++++...| .+..+++.+|.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHH
Confidence 57788888888999999999999999988887 48888899999999999999999999988888 7778888889999
Q ss_pred HHhCCHHHHHHHHHHHHHHHh
Q 013299 399 LVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~ 419 (446)
...|++++|...+.+++++.|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 999999999998888887654
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=8.8e-10 Score=105.22 Aligned_cols=251 Identities=16% Similarity=0.035 Sum_probs=172.7
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIE-WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p-~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
.|+|..++... + +...+| ...+....+.+++...|+++..+...... .+....+...++..+...++.+.
T Consensus 14 ~G~Y~~~i~e~-----~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 14 LGNYQQCINEA-----S-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp TT-HHHHCHHH-----H-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred hhhHHHHHHHh-----h-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 57788887532 1 112222 23446678889999999998877665442 24445666777777766677888
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHH
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFD 293 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 293 (446)
++..++..+.....+.++...+ .++..+...|++++|+..+.+. .+ ..+....-.++..
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~-~~A~i~~~~~~~~~AL~~l~~~-----~~-----lE~~al~Vqi~L~---------- 143 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQL-LAATILFHEGDYEEALKLLHKG-----GS-----LELLALAVQILLK---------- 143 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHH-HHHHHHCCCCHHHHHHCCCTTT-----TC-----HHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhccccccHHHHH-HHHHHHHHcCCHHHHHHHHHcc-----Cc-----ccHHHHHHHHHHH----------
Confidence 9999988773111223443333 4555566689998888776543 11 2233333334433
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.++.+.|.+.++..- +.+.++.-+....|++....| .+.+|...|+......|.. ...++.+|.+++.+|+|++|
T Consensus 144 -~~R~dlA~k~l~~~~-~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t-~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 144 -MNRPDLAEKELKNMQ-QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST-PKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp -TT-HHHHHHHHHHHH-CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S-HHHHHHHHHHHHHCT-HHHH
T ss_pred -cCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCHHHH
Confidence 357899999999999 999888777777777777766 6999999999987776777 48899999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHhh
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK-GAVETYTHLLAALQV 420 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~-eA~~~~~~~l~l~~~ 420 (446)
...+++++..+| .+++.+.+++.+...+|+.. .+.+...++....|.
T Consensus 221 e~~L~~al~~~~--~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 221 EELLEEALEKDP--NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHCCC-C--CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhcc--CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 999999999999 89999999999999999994 455566666666554
No 127
>PRK11906 transcriptional regulator; Provisional
Probab=99.18 E-value=1.1e-09 Score=107.59 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHH---HHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 248 AEEGATFASRAL---ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 248 ~~eA~~~~~~al---~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
.+.|+..|.+++ +. +|+ .+.+|..++.|+....-.. +.+......+|++..++|+ +++|+|+.++..+|
T Consensus 274 ~~~Al~lf~ra~~~~~l-dp~----~a~a~~~lA~~h~~~~~~g--~~~~~~~~~~a~~~A~rAv-eld~~Da~a~~~~g 345 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDI-QTL----KTECYCLLAECHMSLALHG--KSELELAAQKALELLDYVS-DITTVDGKILAIMG 345 (458)
T ss_pred HHHHHHHHHHHhhcccC-Ccc----cHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHH-hcCCCCHHHHHHHH
Confidence 456777788887 52 222 3566666766665442110 1112345689999999999 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhCC
Q 013299 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQGQ 403 (446)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~-~~~~g~ 403 (446)
.++...++++.|+..|++|+.++|+. +.+|+..|+++.-.|+.++|+..++++++++| -...+-..+-.+ ..--..
T Consensus 346 ~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP--~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 346 LITGLSGQAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEP--RRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred HHHHhhcchhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc--hhhHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999 59999999999999999999999999999999 554444433333 344567
Q ss_pred HHHHHHHHHH
Q 013299 404 LKGAVETYTH 413 (446)
Q Consensus 404 ~~eA~~~~~~ 413 (446)
.++|+..|-+
T Consensus 423 ~~~~~~~~~~ 432 (458)
T PRK11906 423 LKNNIKLYYK 432 (458)
T ss_pred hhhhHHHHhh
Confidence 7888877643
No 128
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.17 E-value=1e-09 Score=96.94 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=96.4
Q ss_pred HHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCC
Q 013299 256 SRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRK 332 (446)
Q Consensus 256 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~ 332 (446)
+.+....+.+.....+.+++.+|..+... |++++|+.+|++++ .+.|+. +.+++++|.++...|+
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~la~~~~~~g~ 87 (172)
T PRK02603 20 DLILKILPINKKAKEAFVYYRDGMSAQAD-----------GEYAEALENYEEAL-KLEEDPNDRSYILYNMGIIYASNGE 87 (172)
T ss_pred HHHHHHcccccHhhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHcCC
Confidence 33444344444445577888899888654 67899999999999 988764 4689999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHhhcC
Q 013299 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR--------------YEDAETILNAALDQTG 383 (446)
Q Consensus 333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~--------------~~eA~~~~~~al~~~p 383 (446)
+++|+..+++++.++|++ ..++..+|.++..+|+ +++|+.++++++..+|
T Consensus 88 ~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 88 HDKALEYYHQALELNPKQ-PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999 5999999999999888 6788888888888888
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.5e-09 Score=99.54 Aligned_cols=259 Identities=19% Similarity=0.133 Sum_probs=190.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
...+++.||.++ ..-.+++|.+..++..+|.+|....++..|.+||++.-...|......+..+..++..+.+.+
T Consensus 22 ~d~ry~DaI~~l-----~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 22 RDARYADAIQLL-----GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHhhHHHHHHHH-----HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 345677888765 455688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchH
Q 013299 214 ALNLLRTLLSGSEDPKCL-PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~-~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
|+....... . +|+-. ..+-.-+.+.+. .+++..+.. .++..|... .+....+.|....+.
T Consensus 97 ALrV~~~~~--D-~~~L~~~~lqLqaAIkYs-e~Dl~g~rs----LveQlp~en---~Ad~~in~gCllyke-------- 157 (459)
T KOG4340|consen 97 ALRVAFLLL--D-NPALHSRVLQLQAAIKYS-EGDLPGSRS----LVEQLPSEN---EADGQINLGCLLYKE-------- 157 (459)
T ss_pred HHHHHHHhc--C-CHHHHHHHHHHHHHHhcc-cccCcchHH----HHHhccCCC---ccchhccchheeecc--------
Confidence 999998877 2 23211 111222334343 244434333 344344321 156777888877654
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hcCCCC-----------------
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK----LEGGSN----------------- 351 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----l~P~~~----------------- 351 (446)
|++++|++-|+.|+ +..--+|-.-|+++.++++.|+++.|+++....+. -.|+..
T Consensus 158 ---gqyEaAvqkFqaAl-qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 158 ---GQYEAAVQKFQAAL-QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred ---ccHHHHHHHHHHHH-hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 67999999999999 99999999999999999999999999998877655 344311
Q ss_pred -------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 352 -------LKGWLLMARILSAQKRYEDAETILNAALDQTGKW---EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 352 -------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.++++..+.|++..|+++.|.+.+. ...|.. -++..+.+++.. ...|++.++.+-+.-+|+++|--
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt---DmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALT---DMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh---cCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 3567778889999999998876653 333421 134555555543 34577888888888888887743
Q ss_pred hhh
Q 013299 422 TKT 424 (446)
Q Consensus 422 ~~~ 424 (446)
+++
T Consensus 310 ~ET 312 (459)
T KOG4340|consen 310 PET 312 (459)
T ss_pred hHH
Confidence 333
No 130
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=8e-07 Score=86.57 Aligned_cols=236 Identities=14% Similarity=0.088 Sum_probs=148.5
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcH--HHHHHHHHHHHHCCC---hHHHHH-----HHHHHhcCCCCCCChHHHHHHHHH
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRK--ERYHILALCYYGAGE---DLVALN-----LLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~---~~eA~~-----~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
-..++.++.|.-.|.-||+.-|.+- +.+-.+-..--+-|+ .++++. .|++-+ +.||-|.++++-...+
T Consensus 254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v--~~np~nYDsWfdylrL 331 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV--SKNPYNYDSWFDYLRL 331 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH--HhCCCCchHHHHHHHH
Confidence 3456788999999999999999883 333333322223344 344543 378888 8899999998766555
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh--hchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH-
Q 013299 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL--GISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL- 317 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l--g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~- 317 (446)
....|+.+.-...|++||...||..+.....=|.+| -.++... ...++.+.+.+.|+.++ .+-|+--
T Consensus 332 -~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE--------le~ed~ertr~vyq~~l-~lIPHkkF 401 (677)
T KOG1915|consen 332 -EESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE--------LEAEDVERTRQVYQACL-DLIPHKKF 401 (677)
T ss_pred -HHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHHH-hhcCcccc
Confidence 345688889999999999988875443333323332 2222221 12345566777777777 7777642
Q ss_pred ---HHHHHHHHHHH---------------------------------HcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 318 ---SILYRLSLEYA---------------------------------EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 318 ---~a~~~lg~~~~---------------------------------~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
.+|...|.... +.+++|.....|++-+.-.|.+ -.+|...|.+
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~-c~~W~kyaEl 480 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN-CYAWSKYAEL 480 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh-hHHHHHHHHH
Confidence 33333333333 3456666666666777777776 3777777777
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 362 LSAQKRYEDAETILNAALDQTGKWEQGEL-LRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 362 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~-~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
-..+|+.+.|..+|+-|++.... |-+++ |-..-......|.++.|...|+++|+..|+
T Consensus 481 E~~LgdtdRaRaifelAi~qp~l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPAL-DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCccc-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 77777777777777777765321 23333 334455566777777777777777777654
No 131
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.16 E-value=7.3e-10 Score=113.79 Aligned_cols=139 Identities=13% Similarity=0.012 Sum_probs=115.3
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--------RKLNAAHYYAKM 342 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~ 342 (446)
+...+..|..+.... ..+.+.+|+.+|++|+ +++|+++.++-.++.++... .++..+....++
T Consensus 339 Ay~~~lrg~~~~~~~--------~~~~~~~A~~lle~Ai-~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 339 ALTLFYQAHHYLNSG--------DAKSLNKASDLLEEIL-KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 444555565554332 1346789999999999 99999999999998887654 245677777888
Q ss_pred HHhh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 343 LLKL--EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 343 al~l--~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++.+ +|.++ .++..+|.++...|++++|...+++|++++| + ..+|..+|.++...|++++|++.|++++.++|.
T Consensus 410 a~al~~~~~~~-~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLP-RIYEILAVQALVKGKTDEAYQAINKAIDLEM--S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 7775 77775 8899999999999999999999999999999 4 789999999999999999999999999999987
Q ss_pred hh
Q 013299 421 QT 422 (446)
Q Consensus 421 ~~ 422 (446)
.+
T Consensus 486 ~p 487 (517)
T PRK10153 486 EN 487 (517)
T ss_pred Cc
Confidence 43
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=7.6e-10 Score=90.88 Aligned_cols=105 Identities=18% Similarity=0.076 Sum_probs=92.1
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
..++.+|..+.. .|++++|+..|++++ ..+|++ +.+++.+|.++...|++++|+.+|++++...|
T Consensus 3 ~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLK-----------AGDYADAIQAFQAFL-KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 356677777654 467899999999999 999987 57999999999999999999999999999999
Q ss_pred CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 349 GSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 349 ~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+++ ..++..+|.++..+|++++|+.+++++++..| ++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~ 112 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP--GSSAA 112 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc--CChhH
Confidence 852 26899999999999999999999999999999 66543
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.15 E-value=4.4e-11 Score=88.64 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHhcCCCCC
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~~~P 228 (446)
+++.+|..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+| ++++|+..+++++ +++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al--~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL--KLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH--HHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH--HcCc
Confidence 367889999999999999999999999999999999999999999999999 7999999999999 8888
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.13 E-value=3e-09 Score=91.23 Aligned_cols=115 Identities=22% Similarity=0.152 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHH
Q 013299 297 RQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA 371 (446)
...++...+++.+ .-+|+. ..+.+.+|.++...|++++|+..|++++...|+.. ..++..+|.++..+|+|++|
T Consensus 26 ~~~~~~~~~~~l~-~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 26 DPAKAEAAAEQLA-KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred CHHHHHHHHHHHH-HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4567777899999 999999 56778899999999999999999999999887652 14788899999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
+..++.. ...+ -.+.++..+|.++..+|++++|+..|+++|
T Consensus 105 l~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999773 2233 357788899999999999999999999875
No 135
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=7.5e-07 Score=89.66 Aligned_cols=213 Identities=13% Similarity=0.050 Sum_probs=150.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013299 188 LPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP-----ALLIASKICGEYPDLAEEGATFASRALECL 262 (446)
Q Consensus 188 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 262 (446)
+..+|++.+.|.....++ .|+..+-+..|.+|++ ..+|.-+. .+...+.+ |...|+.+.|...++++++.
T Consensus 342 LRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~-~vdP~ka~Gs~~~Lw~~fakl-Ye~~~~l~~aRvifeka~~V- 416 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVK-TVDPKKAVGSPGTLWVEFAKL-YENNGDLDDARVIFEKATKV- 416 (835)
T ss_pred HhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHH-ccCcccCCCChhhHHHHHHHH-HHhcCcHHHHHHHHHHhhcC-
Confidence 445777777777666553 5778888888888886 67876432 34445554 56678888999999988873
Q ss_pred CCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH-------------------HHHHHH
Q 013299 263 GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-------------------SILYRL 323 (446)
Q Consensus 263 ~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~-------------------~a~~~l 323 (446)
|=..-...+.+|...|..- .+..+++.|+.++++|+ .-|.++ .+|..+
T Consensus 417 ~y~~v~dLa~vw~~waemE-----------lrh~~~~~Al~lm~~A~--~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEME-----------LRHENFEAALKLMRRAT--HVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred CccchHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHhhh--cCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 3111122345555555322 23467889999999988 455553 345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH---HHHHHHH
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT---KAKVQLV 400 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~---~a~~~~~ 400 (446)
+......|-++.....|++.+.|.=-.| ....|.|..+....-|+++.++|++.+.++|-+.-.++|.. +..--..
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 6666667888888899999999887775 88899999999999999999999999998752245666643 3333344
Q ss_pred hCCHHHHHHHHHHHHHHHh
Q 013299 401 QGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 401 ~g~~~eA~~~~~~~l~l~~ 419 (446)
--+.+.|...|+++|+..|
T Consensus 563 g~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCP 581 (835)
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 4567899999999999886
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.12 E-value=9.2e-10 Score=85.00 Aligned_cols=98 Identities=19% Similarity=0.152 Sum_probs=89.7
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 352 (446)
+++.+|.++.. .|++++|+..+++++ +..|+++.+++.+|.++...+++++|+..+++++...|.++
T Consensus 2 ~~~~~a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 68 (100)
T cd00189 2 ALLNLGNLYYK-----------LGDYDEALEYYEKAL-ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA- 68 (100)
T ss_pred HHHHHHHHHHH-----------HhcHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-
Confidence 35566666654 367899999999999 99999999999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.++..+|.++...|++++|..+++++++..|
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 8999999999999999999999999999887
No 137
>PRK11906 transcriptional regulator; Provisional
Probab=99.11 E-value=4.6e-09 Score=103.18 Aligned_cols=180 Identities=12% Similarity=0.055 Sum_probs=124.8
Q ss_pred hcCCCCH---HHH----HHHHHHHHhcCC---HHHHHHHHHhhC---CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013299 155 KRIEWDP---SIL----DHLSFAFSIAGD---LSSLATQIEELL---PGIINRKERYHILALCYYGAGEDLVALNLLRTL 221 (446)
Q Consensus 155 ~~~p~~~---~~~----~~lg~~l~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 221 (446)
...|.+. ++| ++.|......+. .+.|+..|.+++ +++|+.+.+|-.++.|++..- .
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-----------~ 310 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-----------L 310 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-----------H
Confidence 3446666 555 556666655543 357777888888 888888888888888776530 0
Q ss_pred hcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHH
Q 013299 222 LSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 222 l~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
. ...+ ......+|....++|++..+.+ +.++..+|.++... ++++.|
T Consensus 311 ~--g~~~---------------~~~~~~~a~~~A~rAveld~~D-----a~a~~~~g~~~~~~-----------~~~~~a 357 (458)
T PRK11906 311 H--GKSE---------------LELAAQKALELLDYVSDITTVD-----GKILAIMGLITGLS-----------GQAKVS 357 (458)
T ss_pred h--cCCC---------------chHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhh-----------cchhhH
Confidence 0 0000 0112234555555555533222 44555555544332 357899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHh
Q 013299 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-LSAQKRYEDAETILNAALD 380 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~ 380 (446)
+..|++|+ .++|+.+.+|+..|+++.-.|+.++|...+++|++++|--. .+-...-++ .+.....++|+..|-+-.+
T Consensus 358 ~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 358 HILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR-KAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh-HHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 99999999 99999999999999999999999999999999999999973 555555555 6777889999988866544
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=2.3e-09 Score=104.75 Aligned_cols=121 Identities=21% Similarity=0.025 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
..+++++|+..++..+ ...|+|+-.+-..|.++.+.++.++|.+.+++++.++|+.+ ..+.++|..|++.|++++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~-~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~-~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLI-AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP-LLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHhcCChHHHHH
Confidence 4577899999999999 99999999999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
.++..+..+| +++..|..+|..+..+|+..+|...+...+.+.
T Consensus 396 ~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 396 ILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 9999999999 999999999999999999999999988877765
No 139
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.10 E-value=5.1e-09 Score=107.64 Aligned_cols=154 Identities=14% Similarity=0.064 Sum_probs=110.2
Q ss_pred hhCCCCCCcHHHHHH--HHHHHHHCCC---hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013299 186 ELLPGIINRKERYHI--LALCYYGAGE---DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALE 260 (446)
Q Consensus 186 ~al~~~p~~~~~~~~--lg~~~~~~g~---~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~ 260 (446)
++...-|.++++|-. .|.-+...++ ...|+.+|++|+ +++|++..++..++..+....+
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai--~ldP~~a~a~A~la~~~~~~~~-------------- 391 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL--KSEPDFTYAQAEKALADIVRHS-------------- 391 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHh--------------
Confidence 334455666665533 4555555444 667888888888 7888887776544322111000
Q ss_pred HcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 013299 261 CLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--NMRDLSILYRLSLEYAEQRKLNAAHY 338 (446)
Q Consensus 261 ~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~--~P~~~~a~~~lg~~~~~~~~~~~A~~ 338 (446)
..+.+ ....+.+....++++ .+ +|.++.++..+|..+...|++++|..
T Consensus 392 -~~~~~----------------------------~~~l~~a~~~~~~a~-al~~~~~~~~~~~ala~~~~~~g~~~~A~~ 441 (517)
T PRK10153 392 -QQPLD----------------------------EKQLAALSTELDNIV-ALPELNVLPRIYEILAVQALVKGKTDEAYQ 441 (517)
T ss_pred -cCCcc----------------------------HHHHHHHHHHHHHhh-hcccCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 00100 123456667777777 64 88889999999999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 339 YAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 339 ~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
.+++|+.++|+ +.+|..+|.++...|++++|+..|++|+.++| .++.
T Consensus 442 ~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P--~~pt 488 (517)
T PRK10153 442 AINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP--GENT 488 (517)
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCch
Confidence 99999999994 48999999999999999999999999999999 5544
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.10 E-value=1.3e-08 Score=94.86 Aligned_cols=201 Identities=12% Similarity=-0.007 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHH---HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH--
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERY---HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA-- 233 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~---~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a-- 233 (446)
.++..++..|..+...|++++|++.|++++...|+.+.+. +.+|.++++.+++++|+..|++.+ +.+|+++.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi--~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HhCcCCCchHH
Confidence 3566677888888888999999999999988888887665 888899999999999999999999 788887653
Q ss_pred -HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 013299 234 -LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (446)
Q Consensus 234 -~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~ 312 (446)
++..| ++....+. ..+..... .+. .. .......+|+..|++.+ +.
T Consensus 108 a~Y~~g-~~~~~~~~-----~~~~~~~~-~~~---------------~~-----------rD~~~~~~A~~~~~~li-~~ 153 (243)
T PRK10866 108 VLYMRG-LTNMALDD-----SALQGFFG-VDR---------------SD-----------RDPQHARAAFRDFSKLV-RG 153 (243)
T ss_pred HHHHHH-Hhhhhcch-----hhhhhccC-CCc---------------cc-----------cCHHHHHHHHHHHHHHH-HH
Confidence 23222 21111110 00000000 000 00 00123467889999999 89
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHH
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELL 391 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~ 391 (446)
.|+..- ..+|....... .-.- +.--+..|..|.+.|+|.-|+.-++.+++..|+. ...+++
T Consensus 154 yP~S~y--------------a~~A~~rl~~l---~~~l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal 215 (243)
T PRK10866 154 YPNSQY--------------TTDATKRLVFL---KDRL-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL 215 (243)
T ss_pred CcCChh--------------HHHHHHHHHHH---HHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence 998753 12222222111 1111 1333356778888888888888888888888731 246788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHH
Q 013299 392 RTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
+.++.++..+|..++|....+.
T Consensus 216 ~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 216 PLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHcCChHHHHHHHHH
Confidence 8888888888888888776653
No 141
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.10 E-value=1.8e-09 Score=95.05 Aligned_cols=101 Identities=22% Similarity=0.117 Sum_probs=85.3
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
....++.+|.++... +++++|+..|++++ .+.|+. +.+++++|.++...|++++|+..|++++.+
T Consensus 34 ~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSE-----------GEYAEALQNYYEAM-RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466788888888654 57899999999999 998774 458999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHH-------HccCHH-------HHHHHHHHHHhhcC
Q 013299 347 EGGSNLKGWLLMARILS-------AQKRYE-------DAETILNAALDQTG 383 (446)
Q Consensus 347 ~P~~~~~~~~~la~~~~-------~~g~~~-------eA~~~~~~al~~~p 383 (446)
+|.+ ...+.++|.++. .+|+++ +|+.++++++..+|
T Consensus 102 ~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 102 NPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred CcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999 599999999999 677766 55555666777777
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.09 E-value=2.1e-10 Score=83.92 Aligned_cols=64 Identities=23% Similarity=0.230 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
.+|.++...|++++|+..|+++++.+|+++++|+.+|.++..+|++++|+..|++++ +.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL--ELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCCC
Confidence 578999999999999999999999999999999999999999999999999999999 8999885
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.09 E-value=4.9e-10 Score=86.50 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 013299 330 QRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV 408 (446)
Q Consensus 330 ~~~~~~A~~~~~~al~l~P~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~ 408 (446)
+|++++|+..|+++++.+|.+ ....|+.+|.+++.+|+|++|+.++++ ++.+| .+...++.+|.++.++|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHHH
Confidence 566677777777777766632 125566667777777777777777766 66666 56666666677777777777777
Q ss_pred HHHHHH
Q 013299 409 ETYTHL 414 (446)
Q Consensus 409 ~~~~~~ 414 (446)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 666653
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.07 E-value=5.7e-10 Score=81.58 Aligned_cols=62 Identities=27% Similarity=0.382 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+.+|..+...|++++|+..|+++++.+|++ ..+|..+|.++..+|++++|+.+|+++++.+|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456777777888888888888888888877 47888888888888888888888888887777
No 145
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.05 E-value=6.2e-07 Score=80.44 Aligned_cols=207 Identities=27% Similarity=0.193 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLP--GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
........+..+...+++..+...+...+. ..+.....++.+|..+...+.+.+++..+.+++ ..+|++.......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 135 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL--ALDPDPDLAEALL 135 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--cCCCCcchHHHHH
Confidence 367888999999999999999999999997 789999999999999999999999999999999 7777764444333
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC-C
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-D 316 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~-~ 316 (446)
...++...+++++|+..+++++. ..+.. ..........+..+. ..+.+++|+..+.+++ ...|. .
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~-~~~~~~~ 201 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE-LDPEL-NELAEALLALGALLE-----------ALGRYEEALELLEKAL-KLNPDDD 201 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cCCCc-cchHHHHHHhhhHHH-----------HhcCHHHHHHHHHHHH-hhCcccc
Confidence 33145567999999999999987 44310 011233333333322 2457899999999999 99999 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..++..++..+...+++++|+..+.+++...|+. ...+..++.++...++++++...+.+++...|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDN-AEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc-HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999986 47888888888877889999999999999998
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.05 E-value=5.8e-10 Score=86.09 Aligned_cols=80 Identities=25% Similarity=0.253 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
+++++|+..|++++ +.+|+ +...++.+|.++.++|++++|+..+++ ...+|.+ ..+++.+|.++..+|+|++|+.
T Consensus 3 ~~y~~Ai~~~~k~~-~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLL-ELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHH-HHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHH-HHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999 99995 577888999999999999999999999 8999988 5888999999999999999999
Q ss_pred HHHHH
Q 013299 374 ILNAA 378 (446)
Q Consensus 374 ~~~~a 378 (446)
+++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.04 E-value=6.5e-08 Score=90.14 Aligned_cols=191 Identities=14% Similarity=-0.024 Sum_probs=130.4
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013299 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL---LIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (446)
Q Consensus 193 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~---~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (446)
..+..+|..|..++..|+|++|+..|++++ ...|+.+.+. +.+|..++. .+++++|+..+++.++..|.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~-- 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPN-- 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCc--
Confidence 467789999999999999999999999999 8999987654 666666555 78999999999999997776653
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
...+++.+|.++...+. ..+..-. .+++.+ ..+....+|+..|++.+..-|+
T Consensus 105 ~~~a~Y~~g~~~~~~~~----------------~~~~~~~-~~~~~~-----------rD~~~~~~A~~~~~~li~~yP~ 156 (243)
T PRK10866 105 IDYVLYMRGLTNMALDD----------------SALQGFF-GVDRSD-----------RDPQHARAAFRDFSKLVRGYPN 156 (243)
T ss_pred hHHHHHHHHHhhhhcch----------------hhhhhcc-CCCccc-----------cCHHHHHHHHHHHHHHHHHCcC
Confidence 46788888887543211 1111111 222211 1233457899999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCc
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~ 429 (446)
+. - ..+|...+...- - .-..--+..|..+.+.|++..|+..++.+++-.|+.......--
T Consensus 157 S~-y--------------a~~A~~rl~~l~---~--~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~ 216 (243)
T PRK10866 157 SQ-Y--------------TTDATKRLVFLK---D--RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALP 216 (243)
T ss_pred Ch-h--------------HHHHHHHHHHHH---H--HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 73 2 122222222111 1 11222346788888999999999999999999988665544433
Q ss_pred chhhHHh
Q 013299 430 RFYKVYF 436 (446)
Q Consensus 430 ~~~~~~~ 436 (446)
-.-.+|.
T Consensus 217 ~l~~ay~ 223 (243)
T PRK10866 217 LMENAYR 223 (243)
T ss_pred HHHHHHH
Confidence 3333333
No 148
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.02 E-value=2.7e-08 Score=90.35 Aligned_cols=189 Identities=18% Similarity=0.146 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
+++.++..|..+...|++.+|+..|++++...|++ +.+.+.+|.+++..|++++|+..|++.+ +..|+++.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi--~~yP~~~~~--- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI--KLYPNSPKA--- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HH-TT-TTH---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCCcch---
Confidence 44555666666666666666666666665554433 3456666666666666666666666666 556655432
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~ 316 (446)
..+++.+|.++..+...........+...+|+..|+..+ ...|++
T Consensus 79 ----------------------------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li-~~yP~S 123 (203)
T PF13525_consen 79 ----------------------------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI-KRYPNS 123 (203)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH-HH-TTS
T ss_pred ----------------------------------hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH-HHCcCc
Confidence 234444444443332211000012345789999999999 999997
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRT 393 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~~~ 393 (446)
+-+ .+|......+-. .- +.--+..|..+.+.|+|..|+..++.+++..| +. .+++..
T Consensus 124 ~y~--------------~~A~~~l~~l~~---~l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp--~t~~~~~al~~ 183 (203)
T PF13525_consen 124 EYA--------------EEAKKRLAELRN---RL-AEHELYIARFYYKRGKYKAAIIRFQYVIENYP--DTPAAEEALAR 183 (203)
T ss_dssp TTH--------------HHHHHHHHHHHH---HH-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST--TSHHHHHHHHH
T ss_pred hHH--------------HHHHHHHHHHHH---HH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CCchHHHHHHH
Confidence 532 333333322211 11 23344578889999999999999999999988 53 567888
Q ss_pred HHHHHHHhCCHHHHH
Q 013299 394 KAKVQLVQGQLKGAV 408 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~ 408 (446)
++.++..+|..+.|-
T Consensus 184 l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 184 LAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHhCChHHHH
Confidence 999999999988443
No 149
>PRK15331 chaperone protein SicA; Provisional
Probab=99.02 E-value=2.4e-09 Score=91.29 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=97.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
++.+. .+.++..+..|..|.-++.+|++++|+..|+-....+|.++ ..|+.||.++..+|+|++|+..|..|..+.+
T Consensus 26 lk~l~-gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~-~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~- 102 (165)
T PRK15331 26 LKDVH-GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP-DYTMGLAAVCQLKKQFQKACDLYAVAFTLLK- 102 (165)
T ss_pred HHHHh-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34455 67777888899999999999999999999999999999994 9999999999999999999999999999988
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
+++...|+.|.+++.+|+.+.|..+|..+++
T Consensus 103 -~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 103 -NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 8889999999999999999999999999888
No 150
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.99 E-value=9.4e-09 Score=84.33 Aligned_cols=98 Identities=21% Similarity=0.180 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC---cHHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE---QGELL 391 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~ 391 (446)
|.++|.+|.++...|+.++|+..|++++...++.+ ..++..+|..+..+|++++|+..+++++...| + +..+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p--~~~~~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP--DDELNAALR 78 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHH
Confidence 46789999999999999999999999999765431 36889999999999999999999999999988 6 67778
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
..++.++...|+.++|++.+-.++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999877664
No 151
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.96 E-value=1.3e-06 Score=78.26 Aligned_cols=224 Identities=23% Similarity=0.178 Sum_probs=185.3
Q ss_pred cCCHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHhcCCCCHH
Q 013299 174 AGDLSSLATQIEELLPGIIN--RKERYHILALCYYGAGEDLVALNLLRTLLSGS--EDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
.+.+..+...+...+...+. ........+..+...+++..+...+...+ . ..|.....+...+.. ....+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL--ELELLPNLAEALLNLGLL-LEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH--hhhhccchHHHHHHHHHH-HHHHhhHH
Confidence 56778888899999998887 48889999999999999999999999998 6 577777776665554 44467788
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhc-hhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC---CCHHHHHHHHH
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGI-SLSAQSKVAITDFDRATRQAKALQALVSAARSTNM---RDLSILYRLSL 325 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~-~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P---~~~~a~~~lg~ 325 (446)
+++..+.+++...+.. .......+. ++.. .+++++|+..|.+++ ..+| ........++.
T Consensus 113 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 113 EALELLEKALALDPDP-----DLAEALLALGALYE-----------LGDYEEALELYEKAL-ELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHcCCCCc-----chHHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-hcCCCccchHHHHHHhhh
Confidence 9999999999843332 122333333 4433 467899999999999 8888 46677778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 404 (446)
.+...+++++|+..+.+++...|. .. ..+..++..+...+++++|+..+.+++...| +....+...+..+...|..
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDA-EALLNLGLLYLKLGKYEEALEYYEKALELDP--DNAEALYNLALLLLELGRY 252 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccch-HHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--ccHHHHhhHHHHHHHcCCH
Confidence 888999999999999999999999 64 8999999999999999999999999999999 6667778888888888889
Q ss_pred HHHHHHHHHHHHHHhh
Q 013299 405 KGAVETYTHLLAALQV 420 (446)
Q Consensus 405 ~eA~~~~~~~l~l~~~ 420 (446)
+++...+.+++...|.
T Consensus 253 ~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999999875
No 152
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.6e-08 Score=91.49 Aligned_cols=215 Identities=15% Similarity=0.065 Sum_probs=160.8
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA 251 (446)
.+..+++.||+++..-.+.+|.+..+...||-||+...+|.+|-.+|++.- .+.|+.....++-+...+. -+.+.+|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~--ql~P~~~qYrlY~AQSLY~-A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLG--QLHPELEQYRLYQAQSLYK-ACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhChHHHHHHHHHHHHHHH-hcccHHH
Confidence 445689999999999999999999999999999999999999999999999 8999988776666666665 4677777
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHH-HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHH
Q 013299 252 ATFASRALECLGDGCDQMESTANC-LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RDLSILYRLSLEYA 328 (446)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~-~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P--~~~~a~~~lg~~~~ 328 (446)
+....... ++ +.+.....- .-++.|.. +++.. -+..+ +.-| ++++...+.|.+++
T Consensus 98 LrV~~~~~----D~-~~L~~~~lqLqaAIkYse------------~Dl~g----~rsLv-eQlp~en~Ad~~in~gClly 155 (459)
T KOG4340|consen 98 LRVAFLLL----DN-PALHSRVLQLQAAIKYSE------------GDLPG----SRSLV-EQLPSENEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHhc----CC-HHHHHHHHHHHHHHhccc------------ccCcc----hHHHH-HhccCCCccchhccchheee
Confidence 76554332 22 112222111 11122211 11222 24445 5556 78999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----hhcCCC--------------Cc---
Q 013299 329 EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL----DQTGKW--------------EQ--- 387 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al----~~~p~~--------------~~--- 387 (446)
+.|++++|++-|+.|++...-+| ..-++++.+++..|+|+.|+++....+ +..|.- .|
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 99999999999999999998886 888899999999999999998766555 445520 01
Q ss_pred ------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 388 ------GELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 388 ------~~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
.+++..++.++.+.|+++.|.+.+-
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 3566778899999999999887653
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=1.2e-08 Score=95.81 Aligned_cols=106 Identities=10% Similarity=0.115 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHH
Q 013299 316 DLSILYRLSLEY-AEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELL 391 (446)
Q Consensus 316 ~~~a~~~lg~~~-~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~ 391 (446)
+....|..|..+ ...|++++|+..|++.+...|+++ ..+++.+|.+++.+|+|++|+..|++++..+|+. ..++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 445666666665 456788888888888888888762 1577788888888888888888888888777721 146777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+.+|.++..+|++++|...|+++++.+|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 778888888888888888888888777543
No 154
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.93 E-value=1e-07 Score=86.51 Aligned_cols=110 Identities=18% Similarity=0.101 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDL---SILYRLSLEYAEQ-----------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~---~a~~~lg~~~~~~-----------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
+++++|+..|++-+ +..|+++ .+++.+|.++..+ +...+|+..|+..+..-|+++ -
T Consensus 56 ~~y~~A~~~~~~fi-~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-y-------- 125 (203)
T PF13525_consen 56 GDYEEAIAAYERFI-KLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE-Y-------- 125 (203)
T ss_dssp T-HHHHHHHHHHHH-HH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST-T--------
T ss_pred CCHHHHHHHHHHHH-HHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch-H--------
Confidence 34566666666666 6666554 3556666654433 223355555555555555543 1
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 362 LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 362 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
-.+|...+..+-. .-..--+..|..+.+.|.+..|+..|+.+++-.|+....-.
T Consensus 126 ------~~~A~~~l~~l~~-----~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~ 179 (203)
T PF13525_consen 126 ------AEEAKKRLAELRN-----RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEE 179 (203)
T ss_dssp ------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHH
T ss_pred ------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHH
Confidence 1112111111110 01222356899999999999999999999999998655443
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.92 E-value=2.1e-08 Score=95.90 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
++.|-..|.+|...|+|++|.+.|.++.+...+. +.+. .-..++...+.+|.+. ++++|+.+|+++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~---~~~~----------~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A 100 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL---GDKF----------EAAKAYEEAANCYKKG-DPDEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT---T-HH----------HHHHHHHHHHHHHHHT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc---CCHH----------HHHHHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence 5667778889999999999999999988775442 1111 1234556666666555 999999999998
Q ss_pred hCC
Q 013299 90 LLP 92 (446)
Q Consensus 90 l~~ 92 (446)
+.+
T Consensus 101 ~~~ 103 (282)
T PF14938_consen 101 IEI 103 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 156
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.9e-08 Score=92.08 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=105.9
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (446)
-..|..|+..|+|..|...|++|+ ..-+. ...-..++. +++.+ ....++.+++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav--~~l~~-------------~~~~~~ee~----~~~~~--------~k~~~~lNlA 264 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAV--SFLEY-------------RRSFDEEEQ----KKAEA--------LKLACHLNLA 264 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHH--HHhhc-------------cccCCHHHH----HHHHH--------HHHHHhhHHH
Confidence 345888888999999999999988 22111 111111111 11111 1235788888
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
.|+.+. +.+.+|+....++| +++|+|..++|..|.++..+|+++.|+..|+++++++|+| -.+...+
T Consensus 265 ~c~lKl-----------~~~~~Ai~~c~kvL-e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el 331 (397)
T KOG0543|consen 265 ACYLKL-----------KEYKEAIESCNKVL-ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAEL 331 (397)
T ss_pred HHHHhh-----------hhHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHH
Confidence 888664 56889999999999 9999999999999999999999999999999999999998 4888888
Q ss_pred HHHHHHccCHHHH-HHHHHHHHhhcC
Q 013299 359 ARILSAQKRYEDA-ETILNAALDQTG 383 (446)
Q Consensus 359 a~~~~~~g~~~eA-~~~~~~al~~~p 383 (446)
..+-.+..++.+. -..|.+.+..-+
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8887777776655 567777775433
No 157
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=8.2e-06 Score=77.01 Aligned_cols=364 Identities=15% Similarity=0.059 Sum_probs=207.6
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHH------HHHh-hhcCCCCCCCC-ccccHHHHHHHHHHHhHHHHHHhCChHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILD------IVES-SFAEGFPENLG-ADCKLQETLNRAVELLPELWKLADAPRE 81 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~------~~~~-~~~~~~~~~~~-~~~~l~~~~~~a~~~l~~~~~~~g~~~e 81 (446)
++.+.+.|-|++-+|.|+||...-.++-+ ..-. ...-|+...+. -+..++.++++-+-+. .+....-.+.+
T Consensus 91 ~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLA-svhYmR~HYQe 169 (557)
T KOG3785|consen 91 AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLA-SVHYMRMHYQE 169 (557)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHH-HHHHHHHHHHH
Confidence 45678899999999999999987666411 0000 00000000000 0113344444444443 44555678999
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCH
Q 013299 82 TIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDP 161 (446)
Q Consensus 82 A~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~ 161 (446)
||..|+++|.. .|+.. .+.-.+|.. |...+-++-+..++ +..++..|+++
T Consensus 170 AIdvYkrvL~d----n~ey~-alNVy~ALC--------------------yyKlDYydvsqevl-----~vYL~q~pdSt 219 (557)
T KOG3785|consen 170 AIDVYKRVLQD----NPEYI-ALNVYMALC--------------------YYKLDYYDVSQEVL-----KVYLRQFPDST 219 (557)
T ss_pred HHHHHHHHHhc----Chhhh-hhHHHHHHH--------------------HHhcchhhhHHHHH-----HHHHHhCCCcH
Confidence 99999999997 55432 233333332 22333344444443 44577889999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCC-CCCc-------------------------------HHHHHHHHHHHHHCC
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPG-IINR-------------------------------KERYHILALCYYGAG 209 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~-~p~~-------------------------------~~~~~~lg~~~~~~g 209 (446)
-+.+.++-.+.+.=+-..|.+......+- +... |++..+|..-|.++|
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccc
Confidence 99998888887764444444444433322 2111 234445555555555
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH---HHHHHcCCCcc-hhhhHHHHHhhchhHhhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS---RALECLGDGCD-QMESTANCLLGISLSAQS 285 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~---~al~~~~~~~~-~~~~~a~~~lg~~~~~~~ 285 (446)
+..+|+...+ .++|..|.-++..|-+ ....|+--...++.+ +-++....+.. ....-+.-..+.+
T Consensus 300 dVqeA~~L~K-----dl~PttP~EyilKgvv-~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~----- 368 (557)
T KOG3785|consen 300 DVQEAISLCK-----DLDPTTPYEYILKGVV-FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY----- 368 (557)
T ss_pred cHHHHHHHHh-----hcCCCChHHHHHHHHH-HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-----
Confidence 5555555433 3556555554443322 212222222222222 11111111000 0000000000001
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
+.-..++++.+.++...- ..--+|-...++++.++...|.+.+|++.|-+.-.-+-.+.......||.++...
T Consensus 369 ------fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 369 ------FFLSFQFDDVLTYLNSIE-SYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred ------HHHHHHHHHHHHHHHHHH-HHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc
Confidence 112357889998888877 8888888889999999999999999999998775544333235666789999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
|+.+-|+..+-+- ..|. +....+...|......++|==|-+.|..+=.++| .++.|.
T Consensus 442 kkP~lAW~~~lk~--~t~~-e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe 498 (557)
T KOG3785|consen 442 KKPQLAWDMMLKT--NTPS-ERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENWE 498 (557)
T ss_pred CCchHHHHHHHhc--CCch-hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC
Confidence 9999998887432 2342 4556667778888889999888888886655555 344443
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.9e-08 Score=95.43 Aligned_cols=148 Identities=13% Similarity=0.009 Sum_probs=109.2
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013299 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (446)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~ 144 (446)
-...-|+.|++.|+|..|...|++|+.. ++-.. .-..++.-..
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~---l~~~~----------------------------------~~~~ee~~~~ 252 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSF---LEYRR----------------------------------SFDEEEQKKA 252 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHH---hhccc----------------------------------cCCHHHHHHH
Confidence 3445678999999999999999999886 11000 0001111111
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC
Q 013299 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (446)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 224 (446)
. . + -..++.+++.++.++++|.+|+..+.++|..+|+|+.+.|..|.++..+|+|+.|+..|++++
T Consensus 253 ~------~-~-----k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-- 318 (397)
T KOG0543|consen 253 E------A-L-----KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL-- 318 (397)
T ss_pred H------H-H-----HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH--
Confidence 0 0 0 123678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013299 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG 263 (446)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 263 (446)
+++|+|-.+...+..+........+...+.|.+.+...+
T Consensus 319 k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 319 KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999877765544432222233344666777776543
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.86 E-value=3.9e-08 Score=92.34 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHH
Q 013299 296 TRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYED 370 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~e 370 (446)
+++++|+..|++.+ +..|++ +.++|.+|.+|...|++++|+..|++++...|+++ ..+++.+|.++..+|++++
T Consensus 157 ~~y~~Ai~af~~fl-~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 157 SRQDDAIVAFQNFV-KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred CCHHHHHHHHHHHH-HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 56899999999999 999999 58999999999999999999999999999988852 3789999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHH
Q 013299 371 AETILNAALDQTGKWEQGE 389 (446)
Q Consensus 371 A~~~~~~al~~~p~~~~~~ 389 (446)
|..+|+++++.+| +...
T Consensus 236 A~~~~~~vi~~yP--~s~~ 252 (263)
T PRK10803 236 AKAVYQQVIKKYP--GTDG 252 (263)
T ss_pred HHHHHHHHHHHCc--CCHH
Confidence 9999999999999 5543
No 160
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.85 E-value=1.4e-08 Score=99.59 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=68.0
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG---WLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+.+|+++.+|+++|.+|..+|++++|+..|++|++++|++ .++ |+++|.+|..+|++++|+.++++|+++.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP-DEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 6799999999999999999999999999999999999998 465 99999999999999999999999999843
No 161
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=1.1e-07 Score=83.71 Aligned_cols=172 Identities=15% Similarity=0.056 Sum_probs=122.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
...+...|+-|++++.+|.-+...|+++.|.+.|...+++||.+.-++.|.|..++--|||+-|..-+.+-- .-||++
T Consensus 89 tQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY--Q~D~~D 166 (297)
T COG4785 89 SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY--QDDPND 166 (297)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH--hcCCCC
Confidence 345678899999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFAS-RALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~-~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
|-=-+++- ..+..-+..+|...+. |+-. .+.. --+|+..+..+.+.. + ...++++.
T Consensus 167 PfR~LWLY--l~E~k~dP~~A~tnL~qR~~~-~d~e-----~WG~~iV~~yLgkiS-------------~--e~l~~~~~ 223 (297)
T COG4785 167 PFRSLWLY--LNEQKLDPKQAKTNLKQRAEK-SDKE-----QWGWNIVEFYLGKIS-------------E--ETLMERLK 223 (297)
T ss_pred hHHHHHHH--HHHhhCCHHHHHHHHHHHHHh-ccHh-----hhhHHHHHHHHhhcc-------------H--HHHHHHHH
Confidence 85322221 1233345666665544 3433 2211 223443333322211 0 11222222
Q ss_pred HhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 310 RSTNMRD-------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 310 ~~~~P~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
+-..++ .+++++||..+...|+.++|...|+-|++-+-
T Consensus 224 -a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 224 -ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred -hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 222222 36789999999999999999999999887543
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.84 E-value=1.3e-08 Score=74.92 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=35.7
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 329 EQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
..|++++|+..|++++..+|++ ..++..+|.++..+|++++|...+++++..+| +++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDP--DNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT--THHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CHHHHHHHHh
Confidence 4555555555555555555555 35555555555555555555555555555555 4455444444
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.83 E-value=5.8e-08 Score=79.68 Aligned_cols=97 Identities=16% Similarity=0.079 Sum_probs=84.3
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
.+++.++.++... |+.++|+..|++++ +..++. ..++..+|.++...|++++|+..+++++...|
T Consensus 2 ~~~~~~A~a~d~~-----------G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p 69 (120)
T PF12688_consen 2 RALYELAWAHDSL-----------GREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP 69 (120)
T ss_pred chHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3667777777654 56899999999999 876655 56889999999999999999999999999989
Q ss_pred C---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 349 G---SNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 349 ~---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
+ +. .....++.++...|++++|+.++-.++..
T Consensus 70 ~~~~~~-~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 70 DDELNA-ALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred CccccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8 63 78888999999999999999999888753
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=2.2e-08 Score=74.89 Aligned_cols=71 Identities=27% Similarity=0.291 Sum_probs=60.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
|..+|...+++++|+..+++++.++|+++ ..|..+|.++..+|++++|+..++++++..| ++..+...++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p--~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDP-ELWLQRARCLFQLGRYEEALEDLERALELSP--DDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccc-hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC--CcHHHHHHHHh
Confidence 35678888999999999999999999984 8999999999999999999999999999999 77777665544
No 165
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.83 E-value=7.4e-08 Score=82.57 Aligned_cols=119 Identities=18% Similarity=0.061 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILY 321 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~ 321 (446)
.++...+...+++.+...|.. .+...+.+.++.++... |++++|+..|+.++ ...|++ +.+.+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~-----------g~~~~A~~~l~~~~-~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQ-----------GDYDEAKAALEKAL-ANAPDPELKPLARL 89 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-hhCCCHHHHHHHHH
Confidence 345555555566666643332 13355666677666543 56888999999888 776665 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
.||.++..+|++++|+..++.. .-.+-. ..++..+|.|+..+|++++|+..|++||
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~-~~~~~~-~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQI-PDEAFK-ALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-cCcchH-HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8999999999999999999763 333344 3788899999999999999999999875
No 166
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.81 E-value=2.6e-05 Score=78.88 Aligned_cols=248 Identities=10% Similarity=0.031 Sum_probs=177.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP-GIINRK-----ERYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~-~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
...++.++|++.+-|...-.+ ..|+..+-+..|..|++ .+|..+ ..|..+|..|...|+.+.|...|++++
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~- 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT- 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh-
Confidence 456788999999988765444 46788888999988764 455443 578999999999999999999999999
Q ss_pred CCCC-CCC---hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc--------hh------hhHHHHHhhchhHhhh
Q 013299 224 GSED-PKC---LPALLIASKICGEYPDLAEEGATFASRALECLGDGCD--------QM------ESTANCLLGISLSAQS 285 (446)
Q Consensus 224 ~~~~-P~~---~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~--------~~------~~~a~~~lg~~~~~~~ 285 (446)
..+ |.- ..+|..-|..-+. ..+++.|....++|.. .|..+. +. ....|..+....
T Consensus 415 -~V~y~~v~dLa~vw~~waemElr-h~~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle---- 487 (835)
T KOG2047|consen 415 -KVPYKTVEDLAEVWCAWAEMELR-HENFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE---- 487 (835)
T ss_pred -cCCccchHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH----
Confidence 443 322 2344444444333 4678999999999987 454321 00 111122221111
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-NLKGWLLMARILSA 364 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~~~la~~~~~ 364 (446)
+..|-++.....|++++ .+.=-.|++..|.|..+....-+++|.+.|++.+.+.|-- ..+.|...-....+
T Consensus 488 -------Es~gtfestk~vYdrii-dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 488 -------ESLGTFESTKAVYDRII-DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred -------HHhccHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 23456777888999999 8999999999999999999999999999999999997531 13566654333322
Q ss_pred ---ccCHHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 365 ---QKRYEDAETILNAALDQTGKWEQ-GELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 365 ---~g~~~eA~~~~~~al~~~p~~~~-~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
.-..+.|...|++||+.-|. .+ -.++...+.+..+-|-...|++.|+++-.
T Consensus 560 rygg~klEraRdLFEqaL~~Cpp-~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCPP-EHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 23578999999999987662 33 44566778899999999999999988743
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.81 E-value=5.4e-09 Score=77.02 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=58.1
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
+...|++++|++.|++++..+|+++++++.+|.+++..|++++|...+++++ ..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~--~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL--KQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH--GGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999999999999999 889998776665543
No 168
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=7.3e-07 Score=96.42 Aligned_cols=219 Identities=12% Similarity=0.003 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHhcCCCCHHHHH
Q 013299 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALLIASKICGEYPDLAEEGA 252 (446)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~----a~~~~~~~~~~~~~~~~eA~ 252 (446)
-.+..+.|++.+.-+|+++-.|.++-.-..+.++.+.|....++||+ .+||..-+ .|..+..+ ....|.-+.-.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~-tIN~REeeEKLNiWiA~lNl-En~yG~eesl~ 1517 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK-TINFREEEEKLNIWIAYLNL-ENAYGTEESLK 1517 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh-hCCcchhHHHHHHHHHHHhH-HHhhCcHHHHH
Confidence 34456789999999999999999999999999999999999999997 78887543 22221111 11234445666
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 013299 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK 332 (446)
Q Consensus 253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~ 332 (446)
+.|+||-+..++ ..+|..|.-+|.. .+.+++|.+.|+..+ +.--+...+|...|..+..+++
T Consensus 1518 kVFeRAcqycd~------~~V~~~L~~iy~k-----------~ek~~~A~ell~~m~-KKF~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1518 KVFERACQYCDA------YTVHLKLLGIYEK-----------SEKNDEADELLRLML-KKFGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHHHHHHHhcch------HHHHHHHHHHHHH-----------hhcchhHHHHHHHHH-HHhcchhhHHHHHHHHHhcccH
Confidence 777888775443 3567777767743 467899999999999 7767889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 333 LNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 333 ~~~A~~~~~~al~l~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
-++|...+++|+.--|. | .+.....|.+.++.|+-+.+...|+-.+..+| ...+.|........+.|+.+-....
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eH-v~~IskfAqLEFk~GDaeRGRtlfEgll~ayP--KRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEH-VEFISKFAQLEFKYGDAERGRTLFEGLLSAYP--KRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhh-HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc--cchhHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999999998 7 57888889999999999999999999999999 7889999999999999999999999
Q ss_pred HHHHHHHH
Q 013299 411 YTHLLAAL 418 (446)
Q Consensus 411 ~~~~l~l~ 418 (446)
|++++.+.
T Consensus 1657 feRvi~l~ 1664 (1710)
T KOG1070|consen 1657 FERVIELK 1664 (1710)
T ss_pred HHHHHhcC
Confidence 99998763
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.80 E-value=1.1e-07 Score=93.99 Aligned_cols=112 Identities=19% Similarity=0.117 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
+++++|+..|++.. +.+|+ +...++.++...++-.+|++.+++++..+|.+ ...+...+..+...++++.|+...
T Consensus 183 ~~~~~ai~lle~L~-~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLR-ERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHH-hcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56899999999999 88765 66778999999999999999999999999998 699999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
++++...| ++...|+.++.+|...|++++|+..++.+
T Consensus 258 k~av~lsP--~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 258 KKAVELSP--SEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhCc--hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999 89999999999999999999999887744
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.80 E-value=1.5e-08 Score=75.76 Aligned_cols=69 Identities=20% Similarity=0.130 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
|..++...+++++|++++++++.++|+++..|+.+|.++..+|++++|+..|++++ +..|+++.+....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l--~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL--ELSPDDPDARALR 69 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH--HHCCCcHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999 8999998876543
No 171
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.80 E-value=2.5e-08 Score=97.96 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=71.7
Q ss_pred hhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 345 KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL---LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 345 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~---~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
..+|++ ..+|+++|.+|..+|+|++|+..|++|++++| ++.++ |+++|.++..+|++++|++++++++++.+..
T Consensus 69 ~~dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P--d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~ 145 (453)
T PLN03098 69 EADVKT-AEDAVNLGLSLFSKGRVKDALAQFETALELNP--NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLK 145 (453)
T ss_pred cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchh
Confidence 368999 59999999999999999999999999999999 77754 9999999999999999999999999984333
Q ss_pred hhhccCCcch
Q 013299 422 TKTFSSDKRF 431 (446)
Q Consensus 422 ~~~~~~~~~~ 431 (446)
+.....+|.+
T Consensus 146 f~~i~~DpdL 155 (453)
T PLN03098 146 FSTILNDPDL 155 (453)
T ss_pred HHHHHhCcch
Confidence 4333444433
No 172
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=2e-07 Score=82.13 Aligned_cols=101 Identities=17% Similarity=0.058 Sum_probs=86.6
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+..++-.|..|... |...-|.-.|.+++ .+.|+-|++++.||.-+...|+++.|.+.|+..+++||.
T Consensus 64 RA~l~fERGvlYDSl-----------GL~~LAR~DftQaL-ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 64 RAQLLFERGVLYDSL-----------GLRALARNDFSQAL-AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHhcchhhhh-----------hHHHHHhhhhhhhh-hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 356777888888654 45677888999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+. -++.+.|..+.--|||.-|..-+.+.-+.+|
T Consensus 132 y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 132 YN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred ch-HHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 85 8899999998889999988888777766666
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.78 E-value=3.9e-07 Score=87.22 Aligned_cols=211 Identities=17% Similarity=0.081 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY 244 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~ 244 (446)
...|..+...|++++|.++|.++. .++...|+...|-..|..+. .++.+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa--------------~~~~~~~~~~~Aa~~~~~Aa-----------------~~~k~ 87 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAA--------------DCYEKLGDKFEAAKAYEEAA-----------------NCYKK 87 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHH--------------HHHHHTT-HHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHH-----------------HHHHh
Confidence 445666666777777777666553 23334444444444444433 22332
Q ss_pred CCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC--CC----H
Q 013299 245 PDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RD----L 317 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P--~~----~ 317 (446)
. ++++|+.+++++++..-. +.....+.++..+|.+|... .+++++|+++|++|+ ++-. +. .
T Consensus 88 ~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~----------~~d~e~Ai~~Y~~A~-~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 88 G-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ----------LGDYEKAIEYYQKAA-ELYEQEGSPHSAA 155 (282)
T ss_dssp T-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT----------T--HHHHHHHHHHHH-HHHHHTT-HHHHH
T ss_pred h-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHH-HHHHHCCChhhHH
Confidence 2 666777777777765321 11223355666677776543 157899999999999 7632 22 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----H-HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-cHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----L-KGWLLMARILSAQKRYEDAETILNAALDQTGKWE-QGEL 390 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~ 390 (446)
..+..+|.++.+.|+|++|+..|++.....-+++ + ..+...+.++...|++..|...+++....+|... ..+.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 4567899999999999999999999987432211 1 3455678899999999999999999999888332 2333
Q ss_pred HH--HHHHHH--HHhCCHHHHHHHHHHHHHHH
Q 013299 391 LR--TKAKVQ--LVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 391 ~~--~~a~~~--~~~g~~~eA~~~~~~~l~l~ 418 (446)
.+ .+-.++ .....+++++..|.+.-.++
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 33 222222 24556788888888776665
No 174
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1e-07 Score=82.94 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSN----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.=|.-++..|+|++|..-|..||.+-|..+ ...+.+.|.++++++.++.|+..+.+||+++| .+..++..+|.+
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p--ty~kAl~RRAea 177 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP--TYEKALERRAEA 177 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc--hhHHHHHHHHHH
Confidence 335566677777777777777777777642 13456677777777777777777777777777 677777777777
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhhhccC
Q 013299 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~ 427 (446)
|.++.++++|++.|++++++.|...+.-..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 777777777777777777777776554433
No 175
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.70 E-value=6.8e-09 Score=96.94 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=130.4
Q ss_pred CccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC
Q 013299 129 GSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA 208 (446)
Q Consensus 129 ~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 208 (446)
|+-|..+|.|+|||.+| ...+...|.++-.+.+.+.+|.+.++|..|...+..|+.++-.+..+|...|.+-..+
T Consensus 104 GN~yFKQgKy~EAIDCY-----s~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCY-----STAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHh-----hhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34567777788887775 4445667777777777888888888888888888888888777777888888777778
Q ss_pred CChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH----HhhchhHhh
Q 013299 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC----LLGISLSAQ 284 (446)
Q Consensus 209 g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~----~lg~~~~~~ 284 (446)
|...||..-++.+| ++.|++.+..-..+.+. -..|+ +-++...+...+.....+.. .-|..++.
T Consensus 179 g~~~EAKkD~E~vL--~LEP~~~ELkK~~a~i~-----Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk- 246 (536)
T KOG4648|consen 179 GNNMEAKKDCETVL--ALEPKNIELKKSLARIN-----SLRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSK- 246 (536)
T ss_pred hhHHHHHHhHHHHH--hhCcccHHHHHHHHHhc-----chHhh----hHHhhcCCCCCccccchhhhccccCcchhhhh-
Confidence 88888888888888 77887665433222221 11111 00111111100000000100 01222222
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013299 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~ 364 (446)
.+.++-++.+|-+-+ ..+-++.....+ +..+....++++|+..+-+++-++|.. .......+..-.-
T Consensus 247 ----------~~~~~~~i~~~~~~~-A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~-~~~~s~~~~A~T~ 313 (536)
T KOG4648|consen 247 ----------KAMRSVPVVDVVSPR-ATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP-MPDTSGPPKAETI 313 (536)
T ss_pred ----------hhccccceeEeeccc-cccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc-CcccCCCchhHHH
Confidence 234555666665555 444444433333 555556666777777777776666664 2444444555555
Q ss_pred ccCHHHHHHHHHHHHhhcC
Q 013299 365 QKRYEDAETILNAALDQTG 383 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p 383 (446)
.|...|+-..++.++.+.|
T Consensus 314 ~~~~~E~K~~~~T~~~~~P 332 (536)
T KOG4648|consen 314 AKTSKEVKPTKQTAVKVAP 332 (536)
T ss_pred HhhhhhcCcchhheeeecc
Confidence 5666666666666666666
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=98.68 E-value=2.6e-07 Score=78.90 Aligned_cols=90 Identities=8% Similarity=0.013 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.|++++|...|+-.. ..+|.|++.|+.||.++..++++++|+..|..|..+++++| ...+..|.++..+|+.+.|...
T Consensus 50 ~Gk~~eA~~~F~~L~-~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp-~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 50 QGRLDEAETFFRFLC-IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY-RPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred CCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CccchHHHHHHHhCCHHHHHHH
Confidence 468999999999999 99999999999999999999999999999999999999997 8899999999999999999999
Q ss_pred HHHHHhhcCCCCcHH
Q 013299 375 LNAALDQTGKWEQGE 389 (446)
Q Consensus 375 ~~~al~~~p~~~~~~ 389 (446)
|+.++. .| .+..
T Consensus 128 f~~a~~-~~--~~~~ 139 (165)
T PRK15331 128 FELVNE-RT--EDES 139 (165)
T ss_pred HHHHHh-Cc--chHH
Confidence 999998 56 5444
No 177
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1.9e-05 Score=72.03 Aligned_cols=227 Identities=19% Similarity=0.081 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
+.+++-...+.++|...|++..-+......- .....+...++..+..-++.++-+..+.+.+. ...-+....+..+
T Consensus 38 ~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a-~~~~~sn~i~~l~ 113 (299)
T KOG3081|consen 38 KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILASLYELVA-DSTDGSNLIDLLL 113 (299)
T ss_pred cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHHHHHHHH-hhccchhHHHHHH
Confidence 3666666777777777777654443322111 11223344455555555666666655555441 1122222233334
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
+.+.+.+.+++++|+....+.... ...+ .--.++ .+..+.+-|...+++.. +++.+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~l--------E~~A--l~VqI~-----------lk~~r~d~A~~~lk~mq-~ided~- 170 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENL--------EAAA--LNVQIL-----------LKMHRFDLAEKELKKMQ-QIDEDA- 170 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchH--------HHHH--HHHHHH-----------HHHHHHHHHHHHHHHHH-ccchHH-
Confidence 445455567788877776652221 1111 111122 12345667777777777 665543
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 318 SILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 318 ~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
.+..||.++.. .+.+.+|.-+|+..-..-|..+ ...+.++.+.+.+|||++|...++.||..+| .+++.+.+
T Consensus 171 -tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~-~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dpetL~N 246 (299)
T KOG3081|consen 171 -TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTP-LLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDPETLAN 246 (299)
T ss_pred -HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCh-HHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCHHHHHH
Confidence 34444444432 2367778888877776444443 7777788888888888888888888888777 67788888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHH
Q 013299 394 KAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l 415 (446)
+-.+-...|...++.+-+-.-+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHH
Confidence 7777777787777766554333
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.66 E-value=3.1e-06 Score=73.03 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=115.8
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-- 350 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-- 350 (446)
-.+.||..+.. .|++.||...|++++--+--+|+..+..++......++..+|...+++..+-+|..
T Consensus 91 nr~rLa~al~e-----------lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 91 NRYRLANALAE-----------LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHHHHHHHH-----------hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 45667776643 57899999999999934678999999999999999999999999999999999863
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
| .....+|.++..+|++.+|...|+.++.-.| .+.+....+..+.++|+.++|-+.|..+.+-....
T Consensus 160 p-d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp---g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 160 P-DGHLLFARTLAAQGKYADAESAFEVAISYYP---GPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred C-CchHHHHHHHHhcCCchhHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 4 6788899999999999999999999999999 56777788899999999999999988877765543
No 179
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.64 E-value=5.6e-07 Score=77.58 Aligned_cols=92 Identities=15% Similarity=0.073 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ----------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~----------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
|.--++.|.+.++... ..||.|++++++=|.++.++ ..+++|+.=|++|+.++|+. ..+++.+|.+++
T Consensus 3 rl~~FE~ark~aea~y-~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~t 80 (186)
T PF06552_consen 3 RLLFFEHARKKAEAAY-AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHH
Confidence 4445789999999999 99999999999999888765 34677888999999999999 599999999998
Q ss_pred HccC-----------HHHHHHHHHHHHhhcCCCCcHH
Q 013299 364 AQKR-----------YEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 364 ~~g~-----------~~eA~~~~~~al~~~p~~~~~~ 389 (446)
.++. |++|..+|++|+..+| +|..
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P--~ne~ 115 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDP--NNEL 115 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-T--T-HH
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCC--CcHH
Confidence 8865 7889999999999999 6644
No 180
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.62 E-value=6.5e-07 Score=72.63 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=54.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC--cHHHHHHHHHHHHHh
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE--QGELLRTKAKVQLVQ 401 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~ 401 (446)
|.++.+.|++++|++.|.+++.+-|..+ .+|++.+..+..+|+.++|++-+++|+++..... .-.++..+|.++..+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~ra-SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERA-SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccch-HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4455556666666666666666666663 6666666666666666666666666666543100 123445566666666
Q ss_pred CCHHHHHHHHHHHHHH
Q 013299 402 GQLKGAVETYTHLLAA 417 (446)
Q Consensus 402 g~~~eA~~~~~~~l~l 417 (446)
|+.+.|...|+.+-++
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 6666666666655554
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=8.2e-07 Score=87.76 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=96.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 013299 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY 321 (446)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~ 321 (446)
+...+++++|+..+++..+.. | .+...++.++... ++-.+|+..+.+++ ..+|++...+.
T Consensus 179 l~~t~~~~~ai~lle~L~~~~-p-------ev~~~LA~v~l~~-----------~~E~~AI~ll~~aL-~~~p~d~~LL~ 238 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD-P-------EVAVLLARVYLLM-----------NEEVEAIRLLNEAL-KENPQDSELLN 238 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC-C-------cHHHHHHHHHHhc-----------CcHHHHHHHHHHHH-HhCCCCHHHHH
Confidence 344577888888888887743 2 2344455555432 34579999999999 99999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
..+..+...++++.|+...++|+.+.|++ ..+|..|+.+|..+|+|++|+..++.+-
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999998 6999999999999999999998887443
No 182
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.58 E-value=1.3e-07 Score=88.47 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
+.++|.|+||+.||.+++ ..+|.|+-.+-|.+.+|.++.++..|+..|..|+.++-.. ..+|...|..-..+|...||
T Consensus 107 yFKQgKy~EAIDCYs~~i-a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI-AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhccchhHHHHHhhhhh-ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHHhhHHHH
Confidence 345666777777777777 7777777777777777777777777777777777777666 46677777777777777777
Q ss_pred HHHHHHHHhhcCCCCcHHH
Q 013299 372 ETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~ 390 (446)
-.-++.+|++.| ++.++
T Consensus 185 KkD~E~vL~LEP--~~~EL 201 (536)
T KOG4648|consen 185 KKDCETVLALEP--KNIEL 201 (536)
T ss_pred HHhHHHHHhhCc--ccHHH
Confidence 777777777777 44443
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=1.4e-06 Score=80.26 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAK 396 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~~~a~ 396 (446)
.|+.|.-++..|+|.+|+..|+.-+..-|++. ..+++-||.+++.+|+|++|...|..+++..|+. .-+++++-+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 78888899999999999999999999999862 2688889999999999999999999999998842 24799999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 397 VQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++.++|+.++|...|+++++-+|+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999998865443
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.56 E-value=7e-06 Score=70.89 Aligned_cols=157 Identities=18% Similarity=0.030 Sum_probs=114.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCC
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYP 245 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~ 245 (446)
.++.+..++=+++.......+.+++.|+... .+.||..+.+.|++.||...|++++. .+.-+++..++.++...+. .
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa-~ 137 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFA-I 137 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHh-h
Confidence 4556666666778887777888888887654 67899999999999999999999995 4555665544433322111 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRL 323 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~~~a~~~l 323 (446)
+ ++.+|...+++.. +.+|. .|+.+..+
T Consensus 138 ~--------------------------------------------------~~A~a~~tLe~l~-e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 138 Q--------------------------------------------------EFAAAQQTLEDLM-EYNPAFRSPDGHLLF 166 (251)
T ss_pred c--------------------------------------------------cHHHHHHHHHHHh-hcCCccCCCCchHHH
Confidence 2 3456666666666 66664 46667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
|.++..+|++++|+..|+.++.--|+ + .+....+..+.++|+.++|-.-+...
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg-~-~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPG-P-QARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCC-H-HHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 88888889999899999999888888 3 78888888888888888776554433
No 185
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=2.4e-05 Score=71.43 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=133.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcH--HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRK--ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (446)
.++..+..-++.++-+....+-+...-+.. -....=|.++...|++++|+....... +.++....-.+ +.
T Consensus 77 ~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI-~l 148 (299)
T KOG3081|consen 77 LLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQI-LL 148 (299)
T ss_pred HHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHH-HH
Confidence 334444444444444444433333322222 334444778889999999999888733 34444333333 33
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013299 244 YPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
++.+++-|....++..+. +.+.. .-.+.+|..++.. .+...+|.-.|++.- +.-|..+..++.
T Consensus 149 k~~r~d~A~~~lk~mq~i-ded~tLtQLA~awv~la~g--------------gek~qdAfyifeE~s-~k~~~T~~llnG 212 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQI-DEDATLTQLAQAWVKLATG--------------GEKIQDAFYIFEELS-EKTPPTPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHhcc--------------chhhhhHHHHHHHHh-cccCCChHHHcc
Confidence 467888888888888874 22211 1123444444332 345789999999999 888999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHhhcC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-LNAALDQTG 383 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~-~~~al~~~p 383 (446)
.+.++..+|++++|...++.|+.-+|++| +.+.++-.+-..+|.-.++..- +.+.....|
T Consensus 213 ~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 213 QAVCHLQLGRYEEAESLLEEALDKDAKDP-ETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999996 9999999888889998887754 455555667
No 186
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.53 E-value=1.4e-07 Score=71.55 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh---cCCC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQ---TGKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~--~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.++.++|.++..+|+|++|+.+|++++++ .++. +-..++.++|.++..+|++++|++.+++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 44555555555555555555555555533 1100 1244555666666666666666666666666553
No 187
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.49 E-value=5.1e-07 Score=68.36 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---C-CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---G-GSN--LKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~---P-~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
|+-+.+++++|.+|..+|++++|+.+|++++.+. + +++ +.++.++|.++..+|++++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5557889999999999999999999999999762 1 221 3678899999999999999999999999764
No 188
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.49 E-value=5.3e-06 Score=78.47 Aligned_cols=237 Identities=15% Similarity=0.099 Sum_probs=137.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCcHH---HHHHHHHHHHHCCChHHHHHH----HHHHhcCCCCCCC--hHHHHHH
Q 013299 167 LSFAFSIAGDLSSLATQIEELLPGIINRKE---RYHILALCYYGAGEDLVALNL----LRTLLSGSEDPKC--LPALLIA 237 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~eA~~~----~~~al~~~~~P~~--~~a~~~~ 237 (446)
-|.-+....++++|+....+.+..-.+... .+--+..++.++|+|++++.. ..-+. ..+... .++++.+
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~--~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR--ELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 344444455555555555555443222211 122244556667777766543 23333 222111 1233333
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~ 316 (446)
+.. ++..-++.+++.+-+--+. .|.-.. .....++..+|.++.- ++.++++++.|++|+ .+..++
T Consensus 90 ar~-~e~l~~f~kt~~y~k~~l~-lpgt~~~~~~gq~~l~~~~Ahlg-----------ls~fq~~Lesfe~A~-~~A~~~ 155 (518)
T KOG1941|consen 90 ARS-NEKLCEFHKTISYCKTCLG-LPGTRAGQLGGQVSLSMGNAHLG-----------LSVFQKALESFEKAL-RYAHNN 155 (518)
T ss_pred HHH-HHHHHHhhhHHHHHHHHhc-CCCCCcccccchhhhhHHHHhhh-----------HHHHHHHHHHHHHHH-HHhhcc
Confidence 332 2223345566666655555 333221 2223344445554432 346788888888888 765443
Q ss_pred H------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 317 L------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---------LKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 317 ~------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
. .+...||.++.+..|+++|+-+..+|.++--... ..+.+.++..+..+|+..+|.++++.|.++
T Consensus 156 ~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 156 DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3 3567888888888888888888888877654310 135667788888888888888888888765
Q ss_pred cCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 382 TGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 382 ~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.-.- -......-+|.|+...|+.+.|+.-|+++....-
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 3100 2344455678888888888888888888877653
No 189
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.48 E-value=3.1e-06 Score=70.79 Aligned_cols=108 Identities=13% Similarity=0.029 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLR 392 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~ 392 (446)
.+..+|.-|....+.|+|++|++.++....--|..+ ..+...++.++++.|+|++|+..+++.++++|.. +-.-+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 356777888888888888888888888877777542 2577778888888888888888888888888821 1144577
Q ss_pred HHHHHHHHhCC---------------HHHHHHHHHHHHHHHhhhhh
Q 013299 393 TKAKVQLVQGQ---------------LKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 393 ~~a~~~~~~g~---------------~~eA~~~~~~~l~l~~~~~~ 423 (446)
.+|.+...+.. ..+|...|++++...|+..-
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 78888887776 78888999999888876443
No 190
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.45 E-value=0.00013 Score=66.81 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a 233 (446)
..++.++.-|....+.|++++|+..|+++....|.++ .+...++-+++..+++++|+..+++=+ .+.|+++.+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi--~lyP~~~n~ 107 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI--RLYPTHPNA 107 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCCCCCh
Confidence 3567888899999999999999999999988877765 577888999999999999999999999 899988764
No 191
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.8e-07 Score=79.94 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
..++..|+.+|.+++ .++|..+..+-+.+.++.+.++++.....+++|+.++|+. +.+++.+|..++....|++|+..
T Consensus 23 ~k~y~~ai~~y~raI-~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAI-CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHH-hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHHHHHhhccccHHHHH
Confidence 456778888888888 8888888888888888888888888888888888888887 57888888888888888888888
Q ss_pred HHHHHhh
Q 013299 375 LNAALDQ 381 (446)
Q Consensus 375 ~~~al~~ 381 (446)
+.+|..+
T Consensus 101 Lqra~sl 107 (284)
T KOG4642|consen 101 LQRAYSL 107 (284)
T ss_pred HHHHHHH
Confidence 8887543
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=5.7e-06 Score=72.22 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
++..+.|+....+++ +++|.+-.++...+.+|.++..+++|+..|++.++++|... ++....
T Consensus 147 l~k~e~aI~dcsKai-el~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~-ear~~i 208 (271)
T KOG4234|consen 147 LRKWESAIEDCSKAI-ELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR-EAREAI 208 (271)
T ss_pred hhhHHHHHHHHHhhH-hcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH-HHHHHH
Confidence 356789999999999 99999999999999999999999999999999999999873 554433
No 193
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.36 E-value=9.1e-06 Score=70.20 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=56.7
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHH
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK-----------LNAAHYYA 340 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~-----------~~~A~~~~ 340 (446)
.++++-|.++...+.+.. ..+....+++|+.-|++|+ .++|+..++++++|.+|...+. +++|..+|
T Consensus 26 dnL~~WG~ALLELAqfk~-g~es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 26 DNLTNWGGALLELAQFKQ-GPESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 444444444444332211 0123457899999999999 9999999999999999977643 78899999
Q ss_pred HHHHhhcCCCCHHHHHHH
Q 013299 341 KMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 341 ~~al~l~P~~~~~~~~~l 358 (446)
++|+.++|++. ..+..|
T Consensus 104 qkAv~~~P~ne-~Y~ksL 120 (186)
T PF06552_consen 104 QKAVDEDPNNE-LYRKSL 120 (186)
T ss_dssp HHHHHH-TT-H-HHHHHH
T ss_pred HHHHhcCCCcH-HHHHHH
Confidence 99999999983 444333
No 194
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=0.00014 Score=79.33 Aligned_cols=243 Identities=9% Similarity=-0.009 Sum_probs=186.2
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC-CCCcHH----HHHHHHHHHHHCCChHHHHHHHHHHhcCCC
Q 013299 152 VALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG-IINRKE----RYHILALCYYGAGEDLVALNLLRTLLSGSE 226 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~-~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 226 (446)
..+.-+|+++-.|...-..+...++.++|.+..++|+.. ++...+ .|..+-++...-|.-+.-...|++|.+ -.
T Consensus 1449 rlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-yc 1527 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-YC 1527 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-hc
Confidence 445667999999998888888999999999999999864 455544 455555555555766777899999993 23
Q ss_pred CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 227 ~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
+| ..+|..+.+++ ...+++++|.++++..++..... ...|..+|..+..+ ++-++|...+.
T Consensus 1528 d~--~~V~~~L~~iy-~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~fLl~~-----------ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1528 DA--YTVHLKLLGIY-EKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADFLLRQ-----------NEAEAARELLK 1588 (1710)
T ss_pred ch--HHHHHHHHHHH-HHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHHHhcc-----------cHHHHHHHHHH
Confidence 33 34566677785 45688999999999999987632 46888888887553 45678899999
Q ss_pred HHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--
Q 013299 307 SAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT-- 382 (446)
Q Consensus 307 ~al~~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-- 382 (446)
+|+ +--|. +.+..-.-+.+-++.|+-+.+...|+-.+.-.|.- ...|.-+...-.++|+.+.+...|++++.+.
T Consensus 1589 rAL-~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1589 RAL-KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHH-hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999 99999 77888888999999999999999999999999998 5999999999999999999999999999764
Q ss_pred CCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Q 013299 383 GKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLAAL 418 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~-g~~~eA~~~~~~~l~l~ 418 (446)
| .....+|.+=.-|.+. |+-......=.+|.+..
T Consensus 1667 ~--kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1667 I--KKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred h--hHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 5 4555555554444333 44433333334555543
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.00021 Score=74.99 Aligned_cols=230 Identities=13% Similarity=0.005 Sum_probs=122.5
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChH
Q 013299 133 VPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL 212 (446)
Q Consensus 133 ~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 212 (446)
...+++..|+... +.++++.|+.+-+....|..+.++|+.++|..+++..-...+++....-.+-.+|.++|+++
T Consensus 20 ld~~qfkkal~~~-----~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKL-----GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHH-----HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3445666666553 56677777777777777777777777777777777666666667777777777777777777
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL----AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 213 eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~----~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
+|..+|++++ ..+|+ -+..+.+- +++.+.+. -..|+..|+ ..|..+ ...|..+.... ++...
T Consensus 95 ~~~~~Ye~~~--~~~P~-eell~~lF-mayvR~~~yk~qQkaa~~LyK----~~pk~~----yyfWsV~Slil--qs~~~ 160 (932)
T KOG2053|consen 95 EAVHLYERAN--QKYPS-EELLYHLF-MAYVREKSYKKQQKAALQLYK----NFPKRA----YYFWSVISLIL--QSIFS 160 (932)
T ss_pred HHHHHHHHHH--hhCCc-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----hCCccc----chHHHHHHHHH--HhccC
Confidence 7777777777 67777 33222111 11211122 223333333 123221 12233333322 22111
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHH-HHhhcCCCCHHHH-HHHHHHHHH
Q 013299 289 ITDFDRATRQAKALQALVSAARSTN-MRDLSILYRL-SLEYAEQRKLNAAHYYAKM-LLKLEGGSNLKGW-LLMARILSA 364 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~l-g~~~~~~~~~~~A~~~~~~-al~l~P~~~~~~~-~~la~~~~~ 364 (446)
+......-...=|...+++.+ +.. +-...+=..| -.++..+|++++|...+.. -.+..+..+ ... ......+..
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l-~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~-~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLL-EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN-LYLENKKLDLLKL 238 (932)
T ss_pred CcccccchhHHHHHHHHHHHh-ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHH
Confidence 110001112344555666666 544 2222221111 2344556777777776632 223333332 333 233455566
Q ss_pred ccCHHHHHHHHHHHHhhcC
Q 013299 365 QKRYEDAETILNAALDQTG 383 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p 383 (446)
.+++.+-.+...+++...+
T Consensus 239 l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGN 257 (932)
T ss_pred hcChHHHHHHHHHHHHhCC
Confidence 6777777777777777776
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.31 E-value=9.2e-06 Score=67.97 Aligned_cols=88 Identities=10% Similarity=0.016 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccC--
Q 013299 295 ATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKR-- 367 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~-- 367 (446)
.|++++|++.|+.+. ...|.. ..+.+.||.+|...+++++|+..+++.++++|.|+ .-+++..|.+++.+.+
T Consensus 23 ~~~Y~~A~~~le~L~-~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~ 101 (142)
T PF13512_consen 23 KGNYEEAIKQLEALD-TRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS 101 (142)
T ss_pred hCCHHHHHHHHHHHH-hcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence 467999999999999 998876 47889999999999999999999999999999984 1578889999999887
Q ss_pred -------------HHHHHHHHHHHHhhcC
Q 013299 368 -------------YEDAETILNAALDQTG 383 (446)
Q Consensus 368 -------------~~eA~~~~~~al~~~p 383 (446)
..+|...|++.+...|
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 8899999999999999
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.29 E-value=6.8e-07 Score=55.85 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013299 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
|++|+ +++|+|+.+|++||.+|...|++++|+
T Consensus 2 y~kAi-e~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAI-ELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHH-HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777 777777777777777777777777775
No 198
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.29 E-value=0.00026 Score=67.29 Aligned_cols=241 Identities=11% Similarity=-0.016 Sum_probs=135.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC--Ch----HH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRK-----ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK--CL----PA 233 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~--~~----~a 233 (446)
.+++..+.+.-++.+++++..--+.+-...+ ..+..+|.++..++-++++++.|+.|+ +..-+ ++ .+
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~--~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKAL--RYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHH--HHhhccCCceeeeeh
Confidence 3444444444444444444433333321111 233445555555555555555555555 22221 11 12
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---c--chhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDG---C--DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~---~--~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
+..++.+ +.+..++++|+-+..+|.++...- + .-+...+++.+++++..+| +.-+|.++-+++
T Consensus 165 cv~Lgsl-f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G-----------~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 165 CVSLGSL-FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLG-----------RLGDAMECCEEA 232 (518)
T ss_pred hhhHHHH-HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhc-----------ccccHHHHHHHH
Confidence 2223322 333445555555555555543210 0 0122445666777776554 455666666666
Q ss_pred HHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--C---CHHHHHHHHHHHHHccCHHH-----HH
Q 013299 309 ARSTN------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--S---NLKGWLLMARILSAQKRYED-----AE 372 (446)
Q Consensus 309 l~~~~------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~---~~~~~~~la~~~~~~g~~~e-----A~ 372 (446)
. ++. |-.+..+.-+|.+|...|+.|.|...|+.|...-.. + ..+++...|.++....-... |+
T Consensus 233 ~-klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Cral 311 (518)
T KOG1941|consen 233 M-KLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRAL 311 (518)
T ss_pred H-HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 5 542 223445568899999999999999999999765432 1 02455555655555544444 88
Q ss_pred HHHHHHHhhcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 373 TILNAALDQTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 373 ~~~~~al~~~p~----~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+.-++++++... ---..++-.++.+|..+|.-++=-+.+.++-+....
T Consensus 312 e~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 312 EFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 888888876541 012456778899999999999888888777665543
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.29 E-value=7e-06 Score=66.72 Aligned_cols=88 Identities=15% Similarity=0.025 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHccCHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~la~~~~~~g~~~eA 371 (446)
.|+.+.|++.|.+++ .+-|.++.+++|.+..+.-+|+.++|+..+++|+++..+.. -.++...|.+|..+|+-+.|
T Consensus 56 ~g~Ld~AlE~F~qal-~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQAL-CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHH-HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 467899999999999 99999999999999999999999999999999999987642 14688899999999999999
Q ss_pred HHHHHHHHhhcC
Q 013299 372 ETILNAALDQTG 383 (446)
Q Consensus 372 ~~~~~~al~~~p 383 (446)
..-|+.|-++-.
T Consensus 135 R~DFe~AA~LGS 146 (175)
T KOG4555|consen 135 RADFEAAAQLGS 146 (175)
T ss_pred HHhHHHHHHhCC
Confidence 999998877754
No 200
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.28 E-value=0.00097 Score=70.25 Aligned_cols=84 Identities=18% Similarity=0.066 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
+++.+|.+...+.++..|+.+-+..--|.++.++|++++|..+++..- ...|++...+- ....||+++++.++|...
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~--~~~~~D~~tLq-~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALY--GLKGTDDLTLQ-FLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhc--cCCCCchHHHH-HHHHHHHHHhhhhHHHHH
Confidence 444555555555555555555555445555555555555554443332 33333222221 223344445555555555
Q ss_pred HHHHHHH
Q 013299 255 ASRALEC 261 (446)
Q Consensus 255 ~~~al~~ 261 (446)
|++++..
T Consensus 100 Ye~~~~~ 106 (932)
T KOG2053|consen 100 YERANQK 106 (932)
T ss_pred HHHHHhh
Confidence 5555553
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.28 E-value=1.3e-05 Score=73.87 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHH
Q 013299 295 ATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYE 369 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~ 369 (446)
.|+|.+|...|+.=+ ...|++ ++++|.||.+++.+|++++|...|..+++-.|+++ .++++.+|.++..+|+.+
T Consensus 154 sgdy~~A~~~F~~fi-~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 154 SGDYAEAEQAFQAFI-KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred cCCHHHHHHHHHHHH-HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 467899999999999 999997 58999999999999999999999999999988873 278999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHH
Q 013299 370 DAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+|-.+++++++.+| +...+..
T Consensus 233 ~A~atl~qv~k~YP--~t~aA~~ 253 (262)
T COG1729 233 EACATLQQVIKRYP--GTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHCC--CCHHHHH
Confidence 99999999999999 6655443
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.28 E-value=0.00024 Score=65.13 Aligned_cols=198 Identities=15% Similarity=0.014 Sum_probs=129.6
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013299 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP---ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (446)
Q Consensus 193 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~---a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (446)
..+..||+-|...++.|++++|+..|+... ...|..+. +.+.++...+. .+++++|+...++-+...|.++.
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n-- 106 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALD--SRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPN-- 106 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCC--
Confidence 457789999999999999999999999999 88888654 56666666555 68999999999999998877654
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
...+++..|.++...-.....+ .....+|+..|+..+ ..-|++.-+-..... +..++..+
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rD---q~~~~~A~~~f~~~i-~ryPnS~Ya~dA~~~-----------i~~~~d~L----- 166 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRD---QSAARAAFAAFKELV-QRYPNSRYAPDAKAR-----------IVKLNDAL----- 166 (254)
T ss_pred hhHHHHHHHHHHhccCCccccC---HHHHHHHHHHHHHHH-HHCCCCcchhhHHHH-----------HHHHHHHH-----
Confidence 3567888888865543222111 234578999999999 999997533211111 11111111
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
+.-=+..|..|.+.|.+-.|+..++..++..|+. .-.+++..+..++..+|-.++|-.. .++|+.+
T Consensus 167 --A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N 233 (254)
T COG4105 167 --AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGAN 233 (254)
T ss_pred --HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhc
Confidence 1222345666666666666666666666665521 1245566666666666666666543 2344443
No 203
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.27 E-value=9.2e-05 Score=73.38 Aligned_cols=192 Identities=17% Similarity=0.101 Sum_probs=131.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhc
Q 013299 200 ILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGI 279 (446)
Q Consensus 200 ~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~ 279 (446)
.+-.-.++..+...-++.-++|| +++|+.+.++..++. +...-..||..+++++++.. -..+|.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eAL--ei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAg-----------E~~lg~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEAL--EINPDCADAYILLAE---EEASTIVEAEELLRQAVKAG-----------EASLGK 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH--HhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHH-----------HHhhch
Confidence 34444567778888999999999 999999999987653 23445789999999999842 122222
Q ss_pred hhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-CHHHHH
Q 013299 280 SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD--LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-NLKGWL 356 (446)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~~ 356 (446)
... .+....+-... ...+.+ +-+...||.+..+.|+.+||+++++..++..|.. ...++.
T Consensus 237 s~~----------------~~~~g~~~e~~-~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Ire 299 (539)
T PF04184_consen 237 SQF----------------LQHHGHFWEAW-HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRE 299 (539)
T ss_pred hhh----------------hhcccchhhhh-hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHH
Confidence 111 11111111222 222233 3345688999999999999999999999988762 246889
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHHHH-hCC---------------HHHHHHHHHHHHHHHh
Q 013299 357 LMARILSAQKRYEDAETILNAALDQ-TGKWEQGELLRTKAKVQLV-QGQ---------------LKGAVETYTHLLAALQ 419 (446)
Q Consensus 357 ~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~~~~a~~~~~-~g~---------------~~eA~~~~~~~l~l~~ 419 (446)
+|..++..+++|.++...+.+-=+. -| ....+.|..|.+..+ -|+ ...|++..+++++.+|
T Consensus 300 nLie~LLelq~Yad~q~lL~kYdDi~lp--kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 300 NLIEALLELQAYADVQALLAKYDDISLP--KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhccccCC--chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 9999999999999998888775333 25 467777777665533 121 2357899999999998
Q ss_pred hhhhhcc
Q 013299 420 VQTKTFS 426 (446)
Q Consensus 420 ~~~~~~~ 426 (446)
+-++--.
T Consensus 378 HVp~YLL 384 (539)
T PF04184_consen 378 HVPKYLL 384 (539)
T ss_pred CCchhhh
Confidence 8554433
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.27 E-value=0.0038 Score=60.24 Aligned_cols=254 Identities=15% Similarity=0.057 Sum_probs=180.9
Q ss_pred HHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH--HHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHH
Q 013299 71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAI--FLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMIL 148 (446)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~--~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~ 148 (446)
..-+-.|++++|-+-|.-.+. ||+. +.++. +++.. ...|..+.|+..-
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~-----dPEt-----RllGLRgLyleA-----------------qr~GareaAr~yA--- 177 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLD-----DPET-----RLLGLRGLYLEA-----------------QRLGAREAARHYA--- 177 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhc-----ChHH-----HHHhHHHHHHHH-----------------HhcccHHHHHHHH---
Confidence 456779999999999999998 5653 22221 11111 1246677777653
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCC---CCCCcHH-----HHHHHHHHHHHCCChHHHHHHHHH
Q 013299 149 LRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLP---GIINRKE-----RYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 149 ~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~---~~p~~~~-----~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
+.+..+.|.-++++.-.-...+..|+++.|++..+.... +.++-.+ .....+..+.. -+...|...-.+
T Consensus 178 --e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~ 254 (531)
T COG3898 178 --ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALE 254 (531)
T ss_pred --HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHH
Confidence 455677899999999999999999999999998865543 2333322 12222333332 357789999999
Q ss_pred HhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHH
Q 013299 221 LLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300 (446)
Q Consensus 221 al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~e 300 (446)
++ ++.|+...+-+..+..++. .|+..++-..++.+-+. .|+++ .+..|... ..|... ..
T Consensus 255 a~--KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~-ePHP~--ia~lY~~a-----r~gdta----------~d 313 (531)
T COG3898 255 AN--KLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKA-EPHPD--IALLYVRA-----RSGDTA----------LD 313 (531)
T ss_pred Hh--hcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhc-CCChH--HHHHHHHh-----cCCCcH----------HH
Confidence 99 8999998888777777655 68888999999999984 45542 12222211 111100 01
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAAL 379 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al 379 (446)
=++-.++.. .+.|+|.+..+..+..-...|++..|..--+.+..+.|.. .++..|+.|.... |+-.++..++-+++
T Consensus 314 RlkRa~~L~-slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLE-SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHH-hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh--hHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 122234455 7899999999999999999999999999999999999984 7888999998776 99999999999999
Q ss_pred hh
Q 013299 380 DQ 381 (446)
Q Consensus 380 ~~ 381 (446)
+.
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 74
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.25 E-value=1.3e-06 Score=58.19 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILA 202 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 202 (446)
+++..+|.++...|++++|++.|+++++.+|+++++|..||
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 44555555555555555555555555555555555555554
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.25 E-value=1.8e-06 Score=57.57 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (446)
.+++.+|.+|..+|++++|+..|+++++.+|+++ .+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~-~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP-EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH-HHHHHhhh
Confidence 4666777777777777777777777777777763 67766654
No 207
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.23 E-value=6.4e-07 Score=55.98 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=30.0
Q ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHH
Q 013299 183 QIEELLPGIINRKERYHILALCYYGAGEDLVAL 215 (446)
Q Consensus 183 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 215 (446)
+|+++|+++|+++.+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999986
No 208
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.1e-06 Score=74.42 Aligned_cols=103 Identities=14% Similarity=0.005 Sum_probs=94.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
-|.-+....+|+.|+.+|.+|+.++|..+ ..|.+.+.++++.++++.+...+.+|+++.| +....+|.+|..+....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~-~Y~tnralchlk~~~~~~v~~dcrralql~~--N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVA-SYYTNRALCHLKLKHWEPVEEDCRRALQLDP--NLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcc-hhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--HHHHHHHHHHHHHHhhc
Confidence 35566778899999999999999999984 9999999999999999999999999999999 88999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhccCC
Q 013299 403 QLKGAVETYTHLLAALQVQTKTFSSD 428 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~~~~~~~~ 428 (446)
.+++|+..+.++.++...+..+++.+
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~d 118 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDD 118 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcch
Confidence 99999999999999998877776543
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00028 Score=64.36 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hcCC-CCHHHHHHHHHHHHHccCHH
Q 013299 296 TRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK----LEGG-SNLKGWLLMARILSAQKRYE 369 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----l~P~-~~~~~~~~la~~~~~~g~~~ 369 (446)
+.|.=.+..+.+++ +.+ |.+|...-.||.+-.+.||.+.|..+|++.-+ ++.. +...+..+.+.++.-+++|.
T Consensus 191 kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 45677888999999 887 77888889999999999999999999995433 3321 11367788899999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+|...+++.+..+| .++.+-.++|.|++-.|+..+|++..+.++++.|..+
T Consensus 270 ~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 270 EAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999 8889999999999999999999999999999987644
No 210
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.0035 Score=65.56 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 388 GELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 388 ~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
..++..+|.+..++|.|-.|.+-|.++
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 466778899999999999988877665
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.02 E-value=0.014 Score=56.55 Aligned_cols=248 Identities=14% Similarity=0.028 Sum_probs=169.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHH--HHHHH--HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSIL--DHLSF--AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~--~~lg~--~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.|+++.|..-| +.. -++|+.. -+.|. .-.+.|..+.|+.+-+++-...|.-+.++...-......|+
T Consensus 133 eG~~~~Ar~kf-----eAM----l~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 133 EGDYEDARKKF-----EAM----LDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGD 203 (531)
T ss_pred cCchHHHHHHH-----HHH----hcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCC
Confidence 57788887654 222 2334432 23333 33467999999999999999999999999988888899999
Q ss_pred hHHHHHHHHHHhc-CCCCCCChH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 211 DLVALNLLRTLLS-GSEDPKCLP---ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 211 ~~eA~~~~~~al~-~~~~P~~~~---a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
++.|+++.+.... +.+.|+-.+ +.++.++..-.-.-+...|......++++ .|+. .-+-..-+..++.
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL-~pdl----vPaav~AAralf~--- 275 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL-APDL----VPAAVVAARALFR--- 275 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCcc----chHHHHHHHHHHh---
Confidence 9999999876542 024454322 22222222222233567788888888884 3332 1222333344433
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhcCCCCHHHHHHHHHHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML---LKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a---l~l~P~~~~~~~~~la~~~~ 363 (446)
.|+..++-..++.+- +.+|+- .++.+|....--|.++..++++ .++.|++ .++.+..+..-.
T Consensus 276 --------d~~~rKg~~ilE~aW-K~ePHP-----~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn-aes~~~va~aAl 340 (531)
T COG3898 276 --------DGNLRKGSKILETAW-KAEPHP-----DIALLYVRARSGDTALDRLKRAKKLESLKPNN-AESSLAVAEAAL 340 (531)
T ss_pred --------ccchhhhhhHHHHHH-hcCCCh-----HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHH
Confidence 356788889999999 888874 2344444444444555555544 5678998 599999999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLAA 417 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g~~~eA~~~~~~~l~l 417 (446)
.-|+|..|..--+.+....| ...++..++.+.... |+-.+......+++.-
T Consensus 341 da~e~~~ARa~Aeaa~r~~p---res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 341 DAGEFSAARAKAEAAAREAP---RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccchHHHHHHHHHHhhhCc---hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999999999999998 557788889888766 9999999998888875
No 212
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.99 E-value=1.1e-05 Score=50.32 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+|+++|.++..+|++++|+..|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666654
No 213
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.97 E-value=0.00043 Score=66.10 Aligned_cols=125 Identities=12% Similarity=0.058 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
|.+..+.|...|.+|. +..+-..++|...|.+-.. .++.+.|...|+++++..|.+ ...|......+...|+.+.|.
T Consensus 13 r~~g~~~aR~vF~~a~-~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~~~~d~~~aR 90 (280)
T PF05843_consen 13 RTEGIEAARKVFKRAR-KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLIKLNDINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHHHHH-CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTT-HHHHH
T ss_pred HhCChHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHhCcHHHHH
Confidence 3455899999999999 8888899999999999777 567777999999999999999 599999999999999999999
Q ss_pred HHHHHHHhhcCCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 373 TILNAALDQTGKWE-QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 373 ~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..|++++..-|... ...+|-.........|+.+.....+++..++.|.
T Consensus 91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 99999998877211 2367888889999999999999999999999876
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.95 E-value=2e-05 Score=48.99 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.93 E-value=0.0011 Score=65.98 Aligned_cols=213 Identities=14% Similarity=0.017 Sum_probs=135.7
Q ss_pred hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013299 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (446)
Q Consensus 173 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (446)
+..++..-++.-.+|++++|+-+++|.-|+.- ...-..||+..|++++ +....... .... ....|..
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAv--kAgE~~lg----~s~~-~~~~g~~---- 246 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAV--KAGEASLG----KSQF-LQHHGHF---- 246 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHH--HHHHHhhc----hhhh-hhcccch----
Confidence 45677788888899999999999999877753 2345689999999999 32221110 0000 0111111
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc
Q 013299 253 TFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQ 330 (446)
Q Consensus 253 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~ 330 (446)
-..+. ..+......+...+++|..+ .|+.+||++.|+..+ +..|. +..++++|-.++..+
T Consensus 247 ---~e~~~---~Rdt~~~~y~KrRLAmCark-----------lGr~~EAIk~~rdLl-ke~p~~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 247 ---WEAWH---RRDTNVLVYAKRRLAMCARK-----------LGRLREAIKMFRDLL-KEFPNLDNLNIRENLIEALLEL 308 (539)
T ss_pred ---hhhhh---ccccchhhhhHHHHHHHHHH-----------hCChHHHHHHHHHHH-hhCCccchhhHHHHHHHHHHhc
Confidence 01111 00111224556678888755 467899999999999 88776 567999999999999
Q ss_pred CCHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHc-cC---------------HHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 331 RKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQ-KR---------------YEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 331 ~~~~~A~~~~~~al~l~-P~~~~~~~~~la~~~~~~-g~---------------~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
+++.++...+.+==.+. |+. +...+.-|.+..+. ++ -..|++.+.+|++.|| .-+..+.-
T Consensus 309 q~Yad~q~lL~kYdDi~lpkS-Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP--HVp~YLLe 385 (539)
T PF04184_consen 309 QAYADVQALLAKYDDISLPKS-ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP--HVPKYLLE 385 (539)
T ss_pred CCHHHHHHHHHHhccccCCch-HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC--CCchhhhc
Confidence 99999999998854332 554 34444444443221 11 1357789999999999 54433221
Q ss_pred H-H-----HHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 K-A-----KVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~-a-----~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+ . .-..+.|+ .||+.+---.+..|+.
T Consensus 386 ~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~ 417 (539)
T PF04184_consen 386 MKSLILPPEHILKRGD-SEAIAYAFFHLQHWKR 417 (539)
T ss_pred cCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhc
Confidence 1 1 11344564 8888887777777765
No 216
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.88 E-value=1.6e-05 Score=78.25 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
+.++.|+..|.+|+ +++|+.+..+-+.+.++.+.+++..|+..+.+|++++|.. ..+++..|...+.++++.+|...+
T Consensus 18 ~~fd~avdlysKaI-~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAI-ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHH-hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHHHHHHHHHHH
Confidence 56899999999999 9999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHH
Q 013299 376 NAALDQTGKWEQGELL 391 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~ 391 (446)
++...+.| +++.+.
T Consensus 96 ~~~~~l~P--nd~~~~ 109 (476)
T KOG0376|consen 96 EKVKKLAP--NDPDAT 109 (476)
T ss_pred HHhhhcCc--CcHHHH
Confidence 99999999 665544
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.87 E-value=0.0035 Score=61.41 Aligned_cols=181 Identities=17% Similarity=0.097 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHhcCCCCCCChH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYG---AGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
++++..++-..|....+|+.=++..+..-.+ -++.+...+.+|.++.+ .|+.++|+..+..++. ...+.+++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChH
Confidence 4566677778888888888888887777666 56677788888999888 8899999999888553 56666777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 013299 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (446)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~ 312 (446)
.+-..|.++-. ..++....+ ....++|+..|+++- ++
T Consensus 219 ~~gL~GRIyKD-------------~~~~s~~~d-----------------------------~~~ldkAi~~Y~kgF-e~ 255 (374)
T PF13281_consen 219 TLGLLGRIYKD-------------LFLESNFTD-----------------------------RESLDKAIEWYRKGF-EI 255 (374)
T ss_pred HHHHHHHHHHH-------------HHHHcCccc-----------------------------hHHHHHHHHHHHHHH-cC
Confidence 77666666321 011100001 123688999999999 99
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh----------cCCCCHHHHH--HHHHHHHHccCHHHHHHHHHHHH
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL-KL----------EGGSNLKGWL--LMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~l----------~P~~~~~~~~--~la~~~~~~g~~~eA~~~~~~al 379 (446)
+|+....- |++.++...|...+.....++.. .+ ++. . ..|. .++.+....|++++|+.++++++
T Consensus 256 ~~~~Y~GI-N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~-~-dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 256 EPDYYSGI-NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM-Q-DYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred CccccchH-HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc-c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 97554333 45555555554333322222221 11 122 1 3444 45566677899999999999999
Q ss_pred hhcCCCCcHH
Q 013299 380 DQTGKWEQGE 389 (446)
Q Consensus 380 ~~~p~~~~~~ 389 (446)
+..| +.+.
T Consensus 333 ~l~~--~~W~ 340 (374)
T PF13281_consen 333 KLKP--PAWE 340 (374)
T ss_pred hcCC--cchh
Confidence 9988 5443
No 218
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00024 Score=69.93 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=61.7
Q ss_pred ccCccccCCCcHHHHHHHHHHHHHHH--HhhcC--C---------CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 013299 127 QMGSSFVPRNNIEEAILLLMILLRKV--ALKRI--E---------WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN 193 (446)
Q Consensus 127 ~~~~~~~~~~~~~eA~~~l~~~~~~~--~l~~~--p---------~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~ 193 (446)
++|-++...+.+.-++.++..+++.. -++.. | ..-++.++.|..+...|++-.|.+||.+++..--.
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 35567788888888888887766421 11111 1 35678889999999999999999999999999889
Q ss_pred cHHHHHHHHHHHHH
Q 013299 194 RKERYHILALCYYG 207 (446)
Q Consensus 194 ~~~~~~~lg~~~~~ 207 (446)
+|..|..|+.+.+.
T Consensus 368 nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 368 NPRLWLRLAECCIM 381 (696)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999988654
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.83 E-value=0.0014 Score=67.09 Aligned_cols=189 Identities=15% Similarity=0.055 Sum_probs=130.7
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh--hHHHHHhhchhHhhhhhhhchHHH
Q 013299 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME--STANCLLGISLSAQSKVAITDFDR 294 (446)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~--~~a~~~lg~~~~~~~~~~~~~~~~ 294 (446)
.|.=++ .+=|....-.+.. ..-.|+.+.++..+.++.+. +.-..++- ....++.+....- + .+ ..
T Consensus 179 ~f~L~l--SlLPp~~~kll~~----vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~-~----~~-~~ 245 (468)
T PF10300_consen 179 LFNLVL--SLLPPKVLKLLSF----VGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFL-G----ID-GE 245 (468)
T ss_pred HHHHHH--HhCCHHHHHHHhh----cCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHc-C----Cc-cc
Confidence 445555 4455443322221 23457888899988888762 21100010 1111111111100 0 00 01
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHccCHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~~la~~~~~~g~~~eA 371 (446)
....+.|.+.+.... +..|+.+-.++..|.++...|+.++|+..|++++....+. ..-+++-+|+++.-+++|++|
T Consensus 246 ~~~~~~a~~lL~~~~-~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEML-KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 345688999999999 9999999999999999999999999999999998644332 125678899999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHhh
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQL-------KGAVETYTHLLAALQV 420 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~-------~eA~~~~~~~l~l~~~ 420 (446)
..++.+.++.+. |......|..|.++...|+. ++|.+.++++-.+.++
T Consensus 325 ~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 325 AEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999998764 55666678889999999999 8888888877777643
No 220
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00064 Score=64.12 Aligned_cols=165 Identities=14% Similarity=0.026 Sum_probs=121.7
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (446)
..-+.+++..|++.+|-...++.| .-.|.+.-++-+.-..++ ..|+.+.-...++|++...+++. +..+.++-.++
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL--~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dl-p~~sYv~Gmya 182 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLL--DDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADL-PCYSYVHGMYA 182 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHH--HhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCC-cHHHHHHHHHH
Confidence 334667888999999999999999 889999877654433333 35777788888888887645442 22334444444
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGW 355 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~ 355 (446)
.++ +..|.+++|.+.-++++ ++||.|.=+.-.++.++...++..++.+...+.-..--+. ...-|
T Consensus 183 FgL-----------~E~g~y~dAEk~A~ral-qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNy 250 (491)
T KOG2610|consen 183 FGL-----------EECGIYDDAEKQADRAL-QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNY 250 (491)
T ss_pred hhH-----------HHhccchhHHHHHHhhc-cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhh
Confidence 444 34577899999999999 9999999999999999999999999998776653321111 01235
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Q 013299 356 LLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al 379 (446)
..-|..+...++|+.|+.+|++-+
T Consensus 251 WH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 251 WHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhhcccchhHHHHHHHHHH
Confidence 567888899999999999998766
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.77 E-value=5.5e-05 Score=47.07 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+|.++|.++..+|++++|+..|+++++++|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5677788888888888888888888888777
No 222
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00025 Score=64.03 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=91.9
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 142 (446)
..+++.-|+-++..|+++||+..|+.||.+ + .++- +. ..| |.. +=+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~---l---------~~L~---lk----EkP--------------~e~-eW~ 223 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIIC---L---------RNLQ---LK----EKP--------------GEP-EWL 223 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHH---H---------HHHH---hc----cCC--------------CCh-HHH
Confidence 356777788889999999999999999886 0 1110 10 001 110 101
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.+ + --....+.+...++...|++-++++....++..+|+|..++|..|.+....=+..+|..-|.++|
T Consensus 224 eL------d------k~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 224 EL------D------KMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HH------H------HhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 10 0 11123566788899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHH
Q 013299 223 SGSEDPKCLPA 233 (446)
Q Consensus 223 ~~~~~P~~~~a 233 (446)
+++|.-..+
T Consensus 292 --~ldpslasv 300 (329)
T KOG0545|consen 292 --ELDPSLASV 300 (329)
T ss_pred --hcChhhHHH
Confidence 999975543
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00066 Score=62.02 Aligned_cols=138 Identities=13% Similarity=0.070 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHhcCCCC-CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013299 197 RYHILALCYYGAGEDLVALNLLRTLLSGSED-PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (446)
Q Consensus 197 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~-P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (446)
..|-+..++...|.|.-.+..+.+++ ..+ |..+...-.++.+.. +-|+.+.|..+++++-+....-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi--~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL---------- 245 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVI--KYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKL---------- 245 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHH--HhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhh----------
Confidence 45567777788888888888888888 555 556655555555544 3577777777776554321100
Q ss_pred HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
.--..+..++.+.+.++.-++++.+|...|.+.+..||.++ .+.
T Consensus 246 -----------------------------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~-~a~ 289 (366)
T KOG2796|consen 246 -----------------------------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA-VAN 289 (366)
T ss_pred -----------------------------------hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch-hhh
Confidence 00011223344444455555555555555555555555553 555
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
++.|.|++-+|+..+|++.++.++...|
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 5555555555555555555555555555
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0019 Score=61.07 Aligned_cols=149 Identities=14% Similarity=0.042 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh-CCCCH---HHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-NMRDL---SIL 320 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~-~P~~~---~a~ 320 (446)
.|++-+|....++.++..|.+- .++-.--.+++. .|+.+.-...+++++ -. +|+-| -+.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDl-----la~kfsh~a~fy-----------~G~~~~~k~ai~kIi-p~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDL-----LAVKFSHDAHFY-----------NGNQIGKKNAIEKII-PKWNADLPCYSYVH 178 (491)
T ss_pred cccccHHHHHHHHHHHhCchhh-----hhhhhhhhHHHh-----------ccchhhhhhHHHHhc-cccCCCCcHHHHHH
Confidence 4666677778889998766542 122222222222 234566777888888 55 77764 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-----HHHHHHHH
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ-----GELLRTKA 395 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-----~~~~~~~a 395 (446)
-.++..+.+.|-|++|++..++++++||.+ .=+...++.|+.-.||++|+.+...+--.. |+. ..-|++-|
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D-~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~---Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFD-CWASHAKAHVLEMNGRHKEGKEFMYKTEDD---WRQSWMLASHNYWHTA 254 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcc-hHHHHHHHHHHHhcchhhhHHHHHHhcccc---hhhhhHHHhhhhHHHH
Confidence 567888899999999999999999999998 478888999999999999999988765332 222 23366788
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 013299 396 KVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 396 ~~~~~~g~~~eA~~~~~~~ 414 (446)
..+.+-+.++.|++.|.+-
T Consensus 255 l~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HhhhcccchhHHHHHHHHH
Confidence 8999999999999999763
No 225
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.0017 Score=67.84 Aligned_cols=226 Identities=17% Similarity=0.076 Sum_probs=142.5
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHH------------HHHHhhCCCCCCcHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLA------------TQIEELLPGIINRKER 197 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~------------~~~~~al~~~p~~~~~ 197 (446)
++|+..|+.++|.... +. -.+..+|.+++....+..+.+-|. ..++++.+ +|++.++
T Consensus 736 SfyvtiG~MD~AfksI-----~~-----IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e~ea 804 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSI-----QF-----IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEEDEA 804 (1416)
T ss_pred eEEEEeccHHHHHHHH-----HH-----HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcchhh
Confidence 4677888888886532 11 124568888888777776666554 45666665 4444443
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh
Q 013299 198 YHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL 277 (446)
Q Consensus 198 ~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l 277 (446)
..+.+-.++|..++|+.+|+++- +.| . ..-.|+..|.+++|.+..+.- +.......|++.
T Consensus 805 --kvAvLAieLgMlEeA~~lYr~ck--R~D-----L----lNKlyQs~g~w~eA~eiAE~~-------DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 805 --KVAVLAIELGMLEEALILYRQCK--RYD-----L----LNKLYQSQGMWSEAFEIAETK-------DRIHLRNTYYNY 864 (1416)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHH--HHH-----H----HHHHHHhcccHHHHHHHHhhc-------cceehhhhHHHH
Confidence 45777789999999999999988 322 1 122355567887777655311 111112233333
Q ss_pred hchhHhhhhhhhchHHHHHHHHHHHHHHHHH----------HHhhCC----------CCHHHHHHHHHHHHHcCCHHHHH
Q 013299 278 GISLSAQSKVAITDFDRATRQAKALQALVSA----------ARSTNM----------RDLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 278 g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a----------l~~~~P----------~~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
+.-+.. .++.+.|+++|+++ + .-+| .|+..|-.-|.-+...|+.|.|+
T Consensus 865 A~~Lea-----------r~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 865 AKYLEA-----------RRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHh-----------hccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 332222 22334444444432 1 1222 34455566677777788999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 338 YYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
.+|..| .-|+.+..|+.-+|+.++|-.+-+ .. .+..+-|++|..|...|++.+|+..|.++
T Consensus 933 ~~Y~~A---------~D~fs~VrI~C~qGk~~kAa~iA~-----es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 933 SFYSSA---------KDYFSMVRIKCIQGKTDKAARIAE-----ES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHh---------hhhhhheeeEeeccCchHHHHHHH-----hc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888765 456667777888888888865543 23 56778899999999999999999877655
No 226
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.75 E-value=3.4e-05 Score=47.94 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
+++|+.+|.+++..|++++|+..|++++ .++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al--~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL--ELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHCcCC
Confidence 4577888888888888888888888888 778765
No 227
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.73 E-value=0.029 Score=58.32 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHHccCHHHHHHH------HHHHHhhc---CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 362 LSAQKRYEDAETI------LNAALDQT---GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 362 ~~~~g~~~eA~~~------~~~al~~~---p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+-+.|-..+|+.. |+-|.++. .+..-++.+..++..+...|++++|-..|-.+++++.-
T Consensus 960 lnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 960 LNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred HHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 4555666666653 33333221 11135678889999999999999999999999998753
No 228
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.71 E-value=2.5e-05 Score=76.99 Aligned_cols=99 Identities=9% Similarity=-0.011 Sum_probs=90.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
-+.....-+.++.|+..|.+|+.++|++ +..+-+.+..+.+.+.|..|+.-+.+|++.+| ....+|+.+|.+.+..+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnc-a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNC-AIYFANRALAHLKVESFGGALHDALKAIELDP--TYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcc-eeeechhhhhheeechhhhHHHHHHhhhhcCc--hhhheeeeccHHHHhHH
Confidence 3445566789999999999999999999 59999999999999999999999999999999 89999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhhh
Q 013299 403 QLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++.+|+..|+....+.|+.+.+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHH
Confidence 9999999999999999865544
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.0014 Score=57.48 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHHHHH
Q 013299 301 ALQALVSAARSTNMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~---a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
.....++-+ .-+|.+.- +-..++..+.+.|++++|+..++.++....|.. .-+-..||.++..+|.+++|+..+
T Consensus 71 ~~~~~ekf~-~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 71 SIAAAEKFV-QANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hHHHHHHHH-hhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444445 55555443 234678888899999999999999887544431 134567899999999999999988
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
+.... +.| .+...-.+|.++...|+.++|...|+++++..
T Consensus 150 ~t~~~--~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKE--ESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hcccc--ccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 76532 211 23445678999999999999999999999875
No 230
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00053 Score=61.98 Aligned_cols=106 Identities=11% Similarity=-0.001 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--------hcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLK--------LEGGSN---------LKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~--------l~P~~~---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
++-.-|.-++..|++.+|...|+.|+. ..|..+ .+.+.|+..++...|+|=++++.+...|..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 334455666666667766666666643 234331 245667778888888888888888888888
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 382 TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 382 ~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
.| +|..++|.+|.+....=+.++|.+.+.++|++.|.-..+-.
T Consensus 260 ~~--~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 260 HP--GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred CC--chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 88 78888888888888888888888888888888776555443
No 231
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.006 Score=54.99 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=88.0
Q ss_pred HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 201 lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
-+.+| +.++.++|+.+++++| .+-.+.-.. +.-++.++-..+.+++.||.+|+.+-+-.... +...+.-.
T Consensus 80 A~~cy-kk~~~~eAv~cL~~ai--eIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e-es~ssANK 155 (288)
T KOG1586|consen 80 AANCY-KKVDPEEAVNCLEKAI--EIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE-ESVSSANK 155 (288)
T ss_pred HHHHh-hccChHHHHHHHHHHH--HHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch-hhhhhHHH
Confidence 34444 4458888999888888 554443221 23455665556678999999999998854432 21111111
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS-------ILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~-------a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
|+.+.+..+ -..++|.+|+..|+++. ...-+|+- .++.-|.++.-..+.-.+-..+++-..++
T Consensus 156 -----C~lKvA~ya----a~leqY~~Ai~iyeqva-~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 156 -----CLLKVAQYA----AQLEQYSKAIDIYEQVA-RSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred -----HHHHHHHHH----HHHHHHHHHHHHHHHHH-HHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 222222111 24678999999999999 76666653 33566788887788888888888888899
Q ss_pred CCC
Q 013299 348 GGS 350 (446)
Q Consensus 348 P~~ 350 (446)
|..
T Consensus 226 P~F 228 (288)
T KOG1586|consen 226 PAF 228 (288)
T ss_pred Ccc
Confidence 976
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.60 E-value=0.0035 Score=53.44 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.+...++..+...|++++|+..+++++..+| -+-.+|..+-.++..+|+..+|+..|++......
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4556677888899999999999999999999 8889999999999999999999999999887764
No 233
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.57 E-value=0.042 Score=52.61 Aligned_cols=169 Identities=15% Similarity=0.070 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHC----CChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCCcch
Q 013299 196 ERYHILALCYYGA----GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY---PDLAEEGATFASRALECLGDGCDQ 268 (446)
Q Consensus 196 ~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~---~~~~~eA~~~~~~al~~~~~~~~~ 268 (446)
.+.+.+|.+|... .+..+|...|+.+. +..++.+.+.+|.++..- ..+..+|..+|+++.+.-.+. .
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a----~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~--a 147 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA----ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE--A 147 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHh----hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh--H
Confidence 4445555555442 23555666666443 445555555555554432 125566777777666632111 0
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLL 344 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al 344 (446)
..+.+.+|.+|..-.... --......|+..|.++. ... ++.+.+++|.+|.. ..++.+|...|++|.
T Consensus 148 --~~~~~~l~~~~~~g~~~~----~~~~~~~~A~~~~~~aa-~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 148 --ALAMYRLGLAYLSGLQAL----AVAYDDKKALYLYRKAA-ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred --HHHHHHHHHHHHcChhhh----cccHHHHhHHHHHHHHH-Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 122555555554321000 00112358999999998 666 89999999988865 348999999999998
Q ss_pred hhcCCCCHHHHHHHHHHHHHcc---------------CHHHHHHHHHHHHhhcC
Q 013299 345 KLEGGSNLKGWLLMARILSAQK---------------RYEDAETILNAALDQTG 383 (446)
Q Consensus 345 ~l~P~~~~~~~~~la~~~~~~g---------------~~~eA~~~~~~al~~~p 383 (446)
+... . .+++.++ ++...| +...|..++.++....+
T Consensus 219 ~~g~--~-~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 219 EQGD--G-AACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HCCC--H-HHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 8775 3 7888888 666666 55555555555554433
No 234
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0037 Score=59.65 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH
Q 013299 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (446)
Q Consensus 197 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~ 276 (446)
+|..+.....+.+..+.|...|++|+ ...+-...+|...|.+-+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~--~~~~~~~~vy~~~A~~E~~~~~d~---------------------------- 52 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRAR--KDKRCTYHVYVAYALMEYYCNKDP---------------------------- 52 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCS-THHHHHHHHHHHHTCS-H----------------------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHhCCCH----------------------------
Confidence 45666666666666777777777777 444445555554443322222222
Q ss_pred hhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHH
Q 013299 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKG 354 (446)
Q Consensus 277 lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~ 354 (446)
+-|...|+.++ +.-|++.+.|......+...|+.+.|...|++++..-|... ...
T Consensus 53 ----------------------~~A~~Ife~gl-k~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~i 109 (280)
T PF05843_consen 53 ----------------------KRARKIFERGL-KKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKI 109 (280)
T ss_dssp ----------------------HHHHHHHHHHH-HHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHH
T ss_pred ----------------------HHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHH
Confidence 23445555555 55555555555544555555555555555555555444320 124
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 355 WLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
|..........|+.+....+.+++.+..|
T Consensus 110 w~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 110 WKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 55555555555555555555555555555
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0088 Score=55.96 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=103.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
..+.-..-+..+...|++.+|...|..++..+|++.++-..|+.+|...|+.++|...+...= ....+. ..+.
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP--~~~~~~-~~~~---- 205 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP--LQAQDK-AAHG---- 205 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc--ccchhh-HHHH----
Confidence 334445566777889999999999999999999999999999999999999999988887633 111111 1110
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a 319 (446)
....++.+.++-. .|+ ...+++.+ ..||+|.++
T Consensus 206 --------l~a~i~ll~qaa~-~~~-------------------------------------~~~l~~~~-aadPdd~~a 238 (304)
T COG3118 206 --------LQAQIELLEQAAA-TPE-------------------------------------IQDLQRRL-AADPDDVEA 238 (304)
T ss_pred --------HHHHHHHHHHHhc-CCC-------------------------------------HHHHHHHH-HhCCCCHHH
Confidence 1111333333332 111 12445566 789999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcc
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--NLKGWLLMARILSAQK 366 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~~~la~~~~~~g 366 (446)
.+.+|..+...|+.++|++.+-..++.+-+. + .+.-.+-.++...|
T Consensus 239 a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~-~~Rk~lle~f~~~g 286 (304)
T COG3118 239 ALALADQLHLVGRNEAALEHLLALLRRDRGFEDG-EARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc-HHHHHHHHHHHhcC
Confidence 9999999999999999999988887765432 2 44444444444444
No 236
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.50 E-value=0.0082 Score=48.24 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=74.3
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh----
Q 013299 318 SILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGS-----------NLKGWLLMARILSAQKRYEDAETILNAALD---- 380 (446)
Q Consensus 318 ~a~~~lg~~--~~~~~~~~~A~~~~~~al~l~P~~-----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~---- 380 (446)
.+++.|+.. ..+-|-+++|...|++|....-.- ++-++-.|+..+..+|+|++++...+++|.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 344444333 345688999999999998875321 135677888999999999999998888884
Q ss_pred ---hcCCCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 381 ---QTGKWEQGELL----RTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 381 ---~~p~~~~~~~~----~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++. |....| +.+|..+...|+.++|+..|+.+-+...+
T Consensus 88 RGEL~q--deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 88 RGELHQ--DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp H--TTS--THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred cccccc--ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 444 555544 68999999999999999999999988754
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.003 Score=59.02 Aligned_cols=117 Identities=17% Similarity=0.024 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHH-HH--HHHHHccCHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MA--RILSAQKRYEDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~-la--~~~~~~g~~~eA 371 (446)
.+++.+|...|..++ ...|++.++...++.++...|+.++|...+...=.-..+ ..+.. .+ ..+.......+
T Consensus 147 ~e~~~~a~~~~~~al-~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---~~~~~l~a~i~ll~qaa~~~~- 221 (304)
T COG3118 147 AEDFGEAAPLLKQAL-QAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD---KAAHGLQAQIELLEQAAATPE- 221 (304)
T ss_pred ccchhhHHHHHHHHH-HhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh---hHHHHHHHHHHHHHHHhcCCC-
Confidence 367889999999999 999999999999999999999999999888664222222 22222 12 22222222222
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
...+++.+..+| ++..+.+.+|..+...|+.++|++.+-..+..+
T Consensus 222 ~~~l~~~~aadP--dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 222 IQDLQRRLAADP--DDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 234566677899 899999999999999999999998877666653
No 238
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00069 Score=63.86 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=79.1
Q ss_pred hchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 278 GISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 278 g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
+.-|...|++ +.+.++|..|+.+|.+.+ ...-.|++ .+.|.+.+....|+|-.|+..+.+|+.++|++ ..
T Consensus 81 Aen~KeeGN~----~fK~Kryk~A~~~Yt~Gl-k~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~K 154 (390)
T KOG0551|consen 81 AENYKEEGNE----YFKEKRYKDAVESYTEGL-KKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LK 154 (390)
T ss_pred HHHHHHHhHH----HHHhhhHHHHHHHHHHHH-hhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh
Confidence 3344555543 356678889999999988 77666554 45688888888899999999999999999998 58
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+++.=|.++..++++++|+.+++..+..+-
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 888888889999999999999988887765
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.011 Score=53.60 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH------HHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
+.|..-+.++...++|++|-.++.+|++-.-+|. .++-.-|.++..+..+.|+...|+++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555667777778888888888888875433332 234445556666666667777776666
No 240
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.48 E-value=0.00025 Score=43.99 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666666666666666666663
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.43 E-value=0.0018 Score=66.41 Aligned_cols=119 Identities=19% Similarity=0.097 Sum_probs=95.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHHHCCC
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGE 210 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~ 210 (446)
....+.+..++ +....+.|+.+-.....|.++...|+.++|++.|++++.....-+ -.++.+|.++.-+++
T Consensus 246 ~~~~~~a~~lL-----~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 246 DVPLEEAEELL-----EEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 34566676665 456788899999999999999999999999999999996443333 246779999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHH
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLA-------EEGATFASRALE 260 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~-------~eA~~~~~~al~ 260 (446)
|++|...+.+.+ +.+.-....|.+..++|+...++. ++|..+++++-.
T Consensus 321 w~~A~~~f~~L~--~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 321 WEEAAEYFLRLL--KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999999 666666666777788888888888 677777766654
No 242
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.40 E-value=0.0001 Score=69.70 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|.+++|++.|.+++ +++|..+..+...+.++.+.++...|+..|..|+.++|+. +..+-..|.....+|++.+|-..+
T Consensus 128 G~~~~ai~~~t~ai-~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAI-ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhccccccc-ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhchHHHHHHH
Confidence 56899999999999 9999999999999999999999999999999999999998 488888999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
..+.+++=+ .....| +-.+.-..+..++-...|.+..
T Consensus 206 ~~a~kld~d-E~~~a~--lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 206 ALACKLDYD-EANSAT--LKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHhcccc-HHHHHH--HHHhccchhhhhhchhHHHHHH
Confidence 999988652 122222 2233334444444444444443
No 243
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.38 E-value=0.002 Score=49.98 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
.+..+++.+ +.+|+|+++.+.+|..+...|++++|+..+-.++..+|++
T Consensus 7 ~~~al~~~~-a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAAL-AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHH-HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344555555 5556655555555555555555555555555555555543
No 244
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.017 Score=52.15 Aligned_cols=73 Identities=15% Similarity=0.029 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC--CCCC-CChHHHHHHHHHHhcCCCCHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG--SEDP-KCLPALLIASKICGEYPDLAEE 250 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~~~P-~~~~a~~~~~~~~~~~~~~~~e 250 (446)
.+.+++|.+.|.++ |.+|.-...+..|-..|.++-+- +.+. ++....+.-+.-|+++ .+..+
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence 34667776666543 66666667777777777666510 1111 1122222234445553 46667
Q ss_pred HHHHHHHHHHH
Q 013299 251 GATFASRALEC 261 (446)
Q Consensus 251 A~~~~~~al~~ 261 (446)
|+.+++++|++
T Consensus 92 Av~cL~~aieI 102 (288)
T KOG1586|consen 92 AVNCLEKAIEI 102 (288)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 245
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.012 Score=53.92 Aligned_cols=118 Identities=13% Similarity=0.045 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHH-HHHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE-DAETILN 376 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~-eA~~~~~ 376 (446)
..|+..-+.++ .++|-|..+|...-.++..++ ++.+=+.++.+.+.-+|++ -.+|...-.+....|++. .-+...+
T Consensus 60 ~RAl~LT~d~i-~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-YQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 60 PRALQLTEDAI-RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-YQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred HHHHHHHHHHH-HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-hhHHHHHHHHHHHhcCcccchHHHHH
Confidence 45667777777 777777777777666666544 6777777777777777777 477777777777777766 6677777
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 377 AALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 377 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.++..+. .|..+|.++-.+....+.++.-+....++|+.+.-
T Consensus 138 ~~l~~Da--KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 138 LMLDDDA--KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR 179 (318)
T ss_pred HHHhccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 7777766 57777777777777777777777777777776543
No 246
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0013 Score=61.98 Aligned_cols=102 Identities=19% Similarity=0.003 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
+--=|.-|+..++|..|+..|.+.|+.+-.+ .+..|.|.|.+....|+|..|+.-+.+|+..+| .+..+++.-|.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P--~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP--THLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc--chhhhhhhhhH
Confidence 3345999999999999999999999975443 246788999999999999999999999999999 99999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 397 VQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++.++.++++|+..++..+.+..+...
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 999999999999999999888766443
No 247
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.006 Score=55.89 Aligned_cols=174 Identities=10% Similarity=0.048 Sum_probs=105.9
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLA 248 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~ 248 (446)
++.+....+.|++..+.+|.++|.+-..|...-.++..++ +..+-+..+.+.+ .-+|+|..++...-.+
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~--e~npKNYQvWHHRr~i-------- 121 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII--EDNPKNYQVWHHRRVI-------- 121 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH--HhCccchhHHHHHHHH--------
Confidence 3444455667777777777777777777766666666654 3344456666666 6677766655432111
Q ss_pred HHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHH-HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013299 249 EEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA-KALQALVSAARSTNMRDLSILYRLSLEY 327 (446)
Q Consensus 249 ~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-eAl~~~~~al~~~~P~~~~a~~~lg~~~ 327 (446)
++..+ + .. .-++..+.++ ..+..|..+|.+.-.+.
T Consensus 122 ----------ve~l~-d--------------------------------~s~rELef~~~~l-~~DaKNYHaWshRqW~~ 157 (318)
T KOG0530|consen 122 ----------VELLG-D--------------------------------PSFRELEFTKLML-DDDAKNYHAWSHRQWVL 157 (318)
T ss_pred ----------HHHhc-C--------------------------------cccchHHHHHHHH-hccccchhhhHHHHHHH
Confidence 11111 1 11 2345666777 77777888888888777
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc------CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK------RYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 328 ~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g------~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
..-+.++.=+.+..+.++.|--+. .+|...=.+..... ..+.-+.+..+.+...| +|-.+|..+..++..
T Consensus 158 r~F~~~~~EL~y~~~Lle~Di~NN-SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP--~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 158 RFFKDYEDELAYADELLEEDIRNN-SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVP--NNESAWNYLKGLLEL 233 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhcc-chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCC--CCccHHHHHHHHHHh
Confidence 777778888888888877777664 67765432222211 22334556667777777 677777666655554
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.30 E-value=0.027 Score=55.31 Aligned_cols=120 Identities=16% Similarity=0.090 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~ 367 (446)
+.++|+..+..++....+.+++++.-+|.+|.+. ..+++|+..|+++.+++|+. -.=.|++.++...|.
T Consensus 197 dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~--Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 197 DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY--YSGINAATLLMLAGH 274 (374)
T ss_pred CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc--cchHHHHHHHHHcCC
Confidence 3444444444422133344444444444444321 23899999999999999875 344556777777776
Q ss_pred HHHHHHHHHHHH--------hh---cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 368 YEDAETILNAAL--------DQ---TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 368 ~~eA~~~~~~al--------~~---~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
-.+...-+++.. +. .+. .+.-.+-.++.+..-.|+++.|.+++++++.+.|
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~-~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKM-QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhcccccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 443332222221 11 121 2334445677778889999999999999998864
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.28 E-value=0.15 Score=49.92 Aligned_cols=154 Identities=14% Similarity=0.019 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC----CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC-C--
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII----NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK-C-- 230 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~-~-- 230 (446)
......|...+.+..+.|+++.|...+.++...++ ..+...+..+.+++..|+..+|+..++..+ ...+. .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~--~~~~~~~~~ 220 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL--KCRLSKNID 220 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhhhccc
Confidence 45667888999999999999999999999888652 256778888999999999999999999888 41111 1
Q ss_pred hH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 231 LP--ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 231 ~~--a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
+. .... .+............. ........+.++..+|....... .. ...+..++++..|+++
T Consensus 221 ~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~a~~~l~~a~w~~~~~----~~-~~~~~~~~~~~~~~~a 284 (352)
T PF02259_consen 221 SISNAELK-SGLLESLEVISSTNL----------DKESKELKAKAFLLLAKWLDELY----SK-LSSESSDEILKYYKEA 284 (352)
T ss_pred cccHHHHh-hccccccccccccch----------hhhhHHHHHHHHHHHHHHHHhhc----cc-cccccHHHHHHHHHHH
Confidence 00 0010 000000000000000 00111123455666665443320 00 0125678999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHc
Q 013299 309 ARSTNMRDLSILYRLSLEYAEQ 330 (446)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~ 330 (446)
+ +.+|+...+|+.+|..+...
T Consensus 285 ~-~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 285 T-KLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred H-HhChhHHHHHHHHHHHHHHH
Confidence 9 99999999999999875543
No 250
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.20 E-value=0.052 Score=57.03 Aligned_cols=232 Identities=14% Similarity=-0.002 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHhhCC-----CCCCcHHHHHHHHHHHHHCC-----ChHHHHHHHHHHh
Q 013299 158 EWDPSILDHLSFAFSIA-----GDLSSLATQIEELLP-----GIINRKERYHILALCYYGAG-----EDLVALNLLRTLL 222 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~-----~~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g-----~~~eA~~~~~~al 222 (446)
-.+..+...+|.++..- .+.+.|+.+|+.+.. ..-.++.+.+.+|.+|.+.. +++.|...|.++-
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 35677778888888754 589999999999866 11226678899999999854 6778999999988
Q ss_pred cCCCCCCChHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHH
Q 013299 223 SGSEDPKCLPALLIASKICGEYP--DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAK 300 (446)
Q Consensus 223 ~~~~~P~~~~a~~~~~~~~~~~~--~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~e 300 (446)
.. +++.+.+.+|.++.... .+...|..+|..|... .+ ..+.+.++.||..- .- .......
T Consensus 321 --~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~-----~~A~~~la~~y~~G-~g------v~r~~~~ 382 (552)
T KOG1550|consen 321 --EL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GH-----ILAIYRLALCYELG-LG------VERNLEL 382 (552)
T ss_pred --hc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CC-----hHHHHHHHHHHHhC-CC------cCCCHHH
Confidence 33 34445666665544433 3567999999999873 22 46888888887542 10 1225689
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc----------cCHH
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQ-RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ----------KRYE 369 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~----------g~~~ 369 (446)
|..+|+++. +.+ ++.+.+.++..+.-. ++++.+...+...-++.-+. +..+-+.+.... .+..
T Consensus 383 A~~~~k~aA-~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~---~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 383 AFAYYKKAA-EKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV---AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHH-Hcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH---HhhHHHHHHHhccccccccccccchh
Confidence 999999999 877 777777777766543 67777666555544433211 111111111111 1344
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHH
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQ----GQLKGAVETYTHLLAA 417 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~----g~~~eA~~~~~~~l~l 417 (446)
-+...+.++-.. .+..+...+|.++..- .+++.|...|.++..-
T Consensus 457 ~~~~~~~~a~~~----g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 457 RAFSLYSRAAAQ----GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred HHHHHHHHHHhc----cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 444445444322 3445555566555432 2366666666666554
No 251
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.19 E-value=0.00077 Score=41.72 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+|..+|.++..+|++++|+.+|+++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556666666666666666666666666655
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.071 Score=48.61 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 328 AEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 328 ~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
.+..+.++|++.|++++.+-..+. .+.+-..+.++.+.++|+||-..+.+
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 344556666666666655433221 12233345555566666666555544
No 253
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.11 E-value=0.21 Score=53.47 Aligned_cols=266 Identities=17% Similarity=0.073 Sum_probs=156.6
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-----CcHHHHHHHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDP-SILDHLSFAFSIAGDLSSLATQIEELLPGII-----NRKERYHILAL 203 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~-~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~ 203 (446)
..+...|...+||.- +....+|.-. +.....|.-+...++..-- ...++.-| .+|......+.
T Consensus 355 ~w~~~~g~~~eAI~h-------AlaA~d~~~aa~lle~~~~~L~~~~~lsll----~~~~~~lP~~~l~~~P~Lvll~aW 423 (894)
T COG2909 355 EWFAEHGLPSEAIDH-------ALAAGDPEMAADLLEQLEWQLFNGSELSLL----LAWLKALPAELLASTPRLVLLQAW 423 (894)
T ss_pred HHHHhCCChHHHHHH-------HHhCCCHHHHHHHHHhhhhhhhcccchHHH----HHHHHhCCHHHHhhCchHHHHHHH
Confidence 356677788888763 2233333211 2222333333333333222 22222222 24455566677
Q ss_pred HHHHCCChHHHHHHHHHHhcCCCCCCChH------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh
Q 013299 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLP------ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL 277 (446)
Q Consensus 204 ~~~~~g~~~eA~~~~~~al~~~~~P~~~~------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l 277 (446)
......++.+|..++.++...-..|++.. .+..+.++.....|++++|++..+.++...|++.......+...+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 88889999999999888773112332211 111222233334689999999999999988776443344455555
Q ss_pred hchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh----CCCCHHHH--HHHHHHHHHcC--CHHHHHHHHHHH----Hh
Q 013299 278 GISLSAQSKVAITDFDRATRQAKALQALVSAARST----NMRDLSIL--YRLSLEYAEQR--KLNAAHYYAKML----LK 345 (446)
Q Consensus 278 g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~----~P~~~~a~--~~lg~~~~~~~--~~~~A~~~~~~a----l~ 345 (446)
|.+..- .|++++|+.+.+.+. +. +--...+| +..+.++..+| .+++.+..+... +.
T Consensus 504 ~~a~~~-----------~G~~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 504 GEAAHI-----------RGELTQALALMQQAE-QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred hHHHHH-----------hchHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 555433 467899999988888 66 33333444 34477888888 344444444443 22
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----cCCCCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ----TGKWEQG-ELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~-~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..|-+. ......+.++...-+++.+.....+.++. .|.+-.. -+...++.+....|+.++|.........+..
T Consensus 572 q~~~~~-f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 572 QKPRHE-FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hcccch-hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 344442 44555566666666677777766666644 2310122 2234789999999999999999998888764
No 254
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.10 E-value=0.0079 Score=46.68 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
.+..++++++.+|++ ..+.+.+|..+...|++++|++.+-.+++.+|.|++..+.-.+-.++...|.-+.-...|++-|
T Consensus 7 ~~~al~~~~a~~P~D-~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDD-LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456789999999999 6999999999999999999999999999999977778888888899999999888888887765
Q ss_pred H
Q 013299 416 A 416 (446)
Q Consensus 416 ~ 416 (446)
.
T Consensus 86 ~ 86 (90)
T PF14561_consen 86 A 86 (90)
T ss_dssp H
T ss_pred H
Confidence 4
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.018 Score=49.04 Aligned_cols=61 Identities=23% Similarity=0.197 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
.++..++..+...|++++|+..+++++.++|-+ ..+|..+-.++..+|++.+|+..|++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 556678888899999999999999999999999 5999999999999999999999998775
No 256
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.01 E-value=0.047 Score=52.30 Aligned_cols=188 Identities=15% Similarity=-0.014 Sum_probs=127.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH--
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA----GDLSSLATQIEELLPGIINRKERYHILALCYYG-- 207 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-- 207 (446)
....+..++..+... . . -.++.+...++..+... .+..+|...|+.+. +.+++.+.++||.+|..
T Consensus 53 ~~~~~~~a~~~~~~a----~-~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 53 YPPDYAKALKSYEKA----A-E--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGR 123 (292)
T ss_pred ccccHHHHHHHHHHh----h-h--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCC
Confidence 445677776654211 1 1 23446777888887754 36889999999555 45789999999999998
Q ss_pred --CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcC---C-C--CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhc
Q 013299 208 --AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEY---P-D--LAEEGATFASRALECLGDGCDQMESTANCLLGI 279 (446)
Q Consensus 208 --~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~---~-~--~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~ 279 (446)
..++.+|...|+++.+ .-++.-..+.+.++..+..- . - ....|..+|.++-... ...+.+.+|.
T Consensus 124 gv~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a~~~lg~ 195 (292)
T COG0790 124 GVPLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------NPDAQLLLGR 195 (292)
T ss_pred CcccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------CHHHHHHHHH
Confidence 4589999999999993 11332112255555554332 0 1 2337888898888743 2568888998
Q ss_pred hhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHH
Q 013299 280 SLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---------------KLNAAHYYAKMLL 344 (446)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~---------------~~~~A~~~~~~al 344 (446)
+|..- .-. ..+.++|+..|.++. +... ..+++.++ ++...| +...|...+.++.
T Consensus 196 ~y~~G-~Gv------~~d~~~A~~wy~~Aa-~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~ 264 (292)
T COG0790 196 MYEKG-LGV------PRDLKKAFRWYKKAA-EQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC 264 (292)
T ss_pred HHHcC-CCC------CcCHHHHHHHHHHHH-HCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHH
Confidence 87543 100 135789999999999 7777 99999999 666666 6677777777776
Q ss_pred hhcCC
Q 013299 345 KLEGG 349 (446)
Q Consensus 345 ~l~P~ 349 (446)
...+.
T Consensus 265 ~~~~~ 269 (292)
T COG0790 265 ELGFD 269 (292)
T ss_pred HcCCh
Confidence 65554
No 257
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.00 E-value=0.11 Score=52.51 Aligned_cols=219 Identities=12% Similarity=0.048 Sum_probs=149.2
Q ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHCCC--------------hHHHHHHHHHHhcCCCCCCChHHHHHHHHHH--hcCCC
Q 013299 183 QIEELLPGIINRKERYHILALCYYGAGE--------------DLVALNLLRTLLSGSEDPKCLPALLIASKIC--GEYPD 246 (446)
Q Consensus 183 ~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~--~~~~~ 246 (446)
.|++++..-+-.++.|+..+.-+...++ .+++..+|++++. .+.-.+...++.++..- ..+.+
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-GLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHhcccc
Confidence 4677777777888889888777777776 7899999999994 33333443333322210 01122
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh-chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLG-ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
+.+.-..++++++.....+. ..+|..+= .+. |..-..-|...|.+|- +..-.-.+++..-|.
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~----tLv~~~~mn~ir------------R~eGlkaaR~iF~kaR-~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDL----TLVYCQYMNFIR------------RAEGLKAARKIFKKAR-EDKRTRHHVFVAAAL 408 (656)
T ss_pred hhhhhHHHHHHHHhhhccCC----ceehhHHHHHHH------------HhhhHHHHHHHHHHHh-hccCCcchhhHHHHH
Confidence 45666778888887543332 22222221 111 2233567788888887 543333355555554
Q ss_pred H-HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHHHhC
Q 013299 326 E-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ--TGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 326 ~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g 402 (446)
+ |.-+++.+-|...|+-.+.-.|+.+ ..-+.....+...++-..|...|++++.. .|+ ....+|-..-.-...-|
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p-~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~-ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSP-EYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD-KSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh-hhHHHHHHHHHHHHhcc
Confidence 4 3458999999999999999999986 77777888899999999999999999976 552 34677877777788889
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 013299 403 QLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~ 421 (446)
+....++.=++-....|..
T Consensus 487 dL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred cHHHHHHHHHHHHHhcchh
Confidence 9988888877777776643
No 258
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.91 E-value=0.0032 Score=58.85 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (446)
+.|+.++|...|+-|+ .++|++++++...|......+++-+|-.+|-+|+.++|.+ .+++.+.+.
T Consensus 128 ~~Gk~ekA~~lfeHAl-alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n-seALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHAL-ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN-SEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHH-hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc-hHHHhhhhc
Confidence 3477899999999999 9999999999999999998999999999999999999999 588887654
No 259
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.87 E-value=0.0019 Score=39.42 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
+++++|.++...|++++|+..|++.+...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 260
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.86 E-value=0.073 Score=55.91 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=131.4
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC-----CChHHHHHHHHHHhcC---CCCCCChHHHHHHHHHHhcC---C
Q 013299 177 LSSLATQIEELLPGIINRKERYHILALCYYGA-----GEDLVALNLLRTLLSG---SEDPKCLPALLIASKICGEY---P 245 (446)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~---~~~P~~~~a~~~~~~~~~~~---~ 245 (446)
...|...|+.+.+. ++..+.+.+|.++..- .+.+.|+..|+.+.+. ...-.++.+.+.+|.+++.. .
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788999988876 5888999999999875 5889999999998720 00111344556667666653 1
Q ss_pred C-CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 246 D-LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 246 ~-~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
. +.+.|+.+|.++-+... +.+.+.+|.++.... ...+...|.++|..|. .-.+..+.+++|
T Consensus 306 ~~d~~~A~~~~~~aA~~g~-------~~a~~~lg~~~~~g~--------~~~d~~~A~~yy~~Aa---~~G~~~A~~~la 367 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGN-------PDAQYLLGVLYETGT--------KERDYRRAFEYYSLAA---KAGHILAIYRLA 367 (552)
T ss_pred cccHHHHHHHHHHHHhcCC-------chHHHHHHHHHHcCC--------ccccHHHHHHHHHHHH---HcCChHHHHHHH
Confidence 2 56789999999998533 358899999987642 0134679999999988 467889999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhh
Q 013299 325 LEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQ 381 (446)
Q Consensus 325 ~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~ 381 (446)
.+|.. ..+.+.|..+|+++.+.+ ++ .+...++.++.-- +++..+...+...-+.
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~-~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG--NP-SAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc--Ch-hhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 99875 358999999999999988 33 5555555554333 7777777666544433
No 261
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.82 E-value=0.00048 Score=65.23 Aligned_cols=86 Identities=9% Similarity=0.007 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 013299 330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409 (446)
Q Consensus 330 ~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~ 409 (446)
.|.+++|+..|-+++.++|.. +..+-..+.++.++++...|+.-|+.|++++| |....+-.++.....+|..++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~-a~l~~kr~sv~lkl~kp~~airD~d~A~ein~--Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPL-AILYAKRASVFLKLKKPNAAIRDCDFAIEINP--DSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCCch-hhhcccccceeeeccCCchhhhhhhhhhccCc--ccccccchhhHHHHHhhchHHHHH
Confidence 678999999999999999998 59999999999999999999999999999999 888888889999999999999999
Q ss_pred HHHHHHHHH
Q 013299 410 TYTHLLAAL 418 (446)
Q Consensus 410 ~~~~~l~l~ 418 (446)
.++.+.++.
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 999998875
No 262
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.79 E-value=0.74 Score=46.77 Aligned_cols=69 Identities=9% Similarity=0.053 Sum_probs=63.6
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
++.+|.|.++|+.|-.-+..+ -+++..+.|++.+..-|..+.+|-......+...+|+.-+.+|.+||.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 577899999999887766655 899999999999999999999999999999999999999999999994
No 263
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.0068 Score=60.09 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhcCC------CC-HHHHHHHHHHHHHccC
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML-LKLEGG------SN-LKGWLLMARILSAQKR 367 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a-l~l~P~------~~-~~~~~~la~~~~~~g~ 367 (446)
....-+..-.+-++ .+.-+.+.+++-.+..++..|++..|.+.+... +.-.|. -. -..|+++|.|++.+|.
T Consensus 220 ~~Lk~~krevK~vm-n~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~ 298 (696)
T KOG2471|consen 220 RNLKLAKREVKHVM-NIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC 298 (696)
T ss_pred HHHHHHHHhhhhhh-hhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh
Confidence 34566667777788 788899999999999999999999999988654 233333 20 1358899999999999
Q ss_pred HHHHHHHHHHHHh---------hcCC-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 368 YEDAETILNAALD---------QTGK-------WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 368 ~~eA~~~~~~al~---------~~p~-------~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
|.-+..+|.+|++ +.|. +...++.|+.|..+...|++-.|.++|.+++..+..++.-|
T Consensus 299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence 9999999999995 1221 13578899999999999999999999999998876555444
No 264
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.74 E-value=0.068 Score=52.08 Aligned_cols=110 Identities=8% Similarity=-0.158 Sum_probs=79.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGD------------LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLL 218 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 218 (446)
...++.+|.|.++|..+....-..-. .+.-+..|++|++.+|++...+..+-.+.......++.....
T Consensus 9 ~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 9 NRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34467889999999877655443322 355678899999999999999888888888888888888899
Q ss_pred HHHhcCCCCCCChHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHc
Q 013299 219 RTLLSGSEDPKCLPALLIASKICGEYP--DLAEEGATFASRALECL 262 (446)
Q Consensus 219 ~~al~~~~~P~~~~a~~~~~~~~~~~~--~~~~eA~~~~~~al~~~ 262 (446)
++++ ..+|+++..+........... -.+......|.++++.+
T Consensus 89 e~~l--~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 89 EELL--FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHH--HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 9999 889999887765443333221 23556666666666643
No 265
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.69 E-value=0.0035 Score=38.24 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+++.+|.++..+|++++|+..++++++..|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 567777777777788888888888877777
No 266
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.024 Score=57.64 Aligned_cols=123 Identities=16% Similarity=0.048 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH-H
Q 013299 299 AKALQALVSAARSTNMRDLSILYR--LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-L 375 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~--lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~-~ 375 (446)
.-++..+..-+ .++|.+++.+.. +...+...++-..+......++..+|++. .+..+||..+..-|....++.. .
T Consensus 48 ~~~~~a~~~~~-~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 48 ALAIYALLLGI-AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC-PAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred hHHHHHHHccC-ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc-hHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34666777777 788898887543 47777778888888999999999999985 9999999888777776655544 4
Q ss_pred HHHHhhcCCCCcHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 376 NAALDQTGKWEQGELLRTK------AKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~------a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
+.+....| ++......+ +..+..+|+..++.....++.++.|++....
T Consensus 126 ~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 126 EIAEWLSP--DNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred HHHHhcCc--chHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 55888888 777777777 8889999999999999999999998775443
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.67 E-value=0.0038 Score=39.33 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
+.+||.+|..+|++++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555443
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.66 E-value=0.0045 Score=38.96 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=11.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 355 WLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
|.+||.++..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.11 Score=45.82 Aligned_cols=85 Identities=22% Similarity=0.137 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e 370 (446)
.+++++|+..++.++ -.|.|.. +-.+||.+..++|.+|+|+..+..... +...+..-...|.++..+|+-++
T Consensus 102 ~~~~d~A~aqL~~~l--~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 102 ANNLDKAEAQLKQAL--AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred hccHHHHHHHHHHHH--ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHH
Confidence 356777777777777 3444433 335788888889999999887765422 22112345567899999999999
Q ss_pred HHHHHHHHHhhcC
Q 013299 371 AETILNAALDQTG 383 (446)
Q Consensus 371 A~~~~~~al~~~p 383 (446)
|...|++++...+
T Consensus 178 Ar~ay~kAl~~~~ 190 (207)
T COG2976 178 ARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHHccC
Confidence 9999999988766
No 270
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.64 E-value=1.1 Score=47.02 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=38.3
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhh-cC-CCCCCCCccccHH---HHHHHHHHHhHHHHHHhCChHHHHHHH
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF-AE-GFPENLGADCKLQ---ETLNRAVELLPELWKLADAPRETIMSY 86 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~l~---~~~~~a~~~l~~~~~~~g~~~eA~~~y 86 (446)
.++..-.|+...|+..+|.-. ..++++.+... .- |+-..+. +.. ..+++-+...-.+++.+...++|+.+|
T Consensus 492 nl~iaercfaai~dvak~r~l-hd~~eiadeas~~~ggdgt~fy---kvra~lail~kkfk~ae~ifleqn~te~aigmy 567 (1636)
T KOG3616|consen 492 NLFIAERCFAAIGDVAKARFL-HDILEIADEASIEIGGDGTDFY---KVRAMLAILEKKFKEAEMIFLEQNATEEAIGMY 567 (1636)
T ss_pred cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhhCCCCchHH---HHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHH
Confidence 345556677777776665432 33344432221 00 1111110 111 122333333346788899999999998
Q ss_pred HHHhC
Q 013299 87 RRALL 91 (446)
Q Consensus 87 ~~al~ 91 (446)
+..-+
T Consensus 568 ~~lhk 572 (1636)
T KOG3616|consen 568 QELHK 572 (1636)
T ss_pred HHHHh
Confidence 87544
No 271
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.64 E-value=0.012 Score=40.58 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL 357 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~ 357 (446)
.+|.+|..+++.|+|++|..+++.+++++|++. .+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~-Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR-QAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH-HHHHH
Confidence 455556666666666666666666666666652 44443
No 272
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.63 E-value=0.03 Score=44.73 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=73.7
Q ss_pred HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhch
Q 013299 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280 (446)
Q Consensus 201 lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 280 (446)
++.-+++.|++-+|+++.+..+ ..++++...++. ...+| --+++.+-...+|+ ...-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i--~~h~~~~~~~~l-----h~~QG-----~if~~lA~~ten~d-----~k~~------ 58 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLI--SRHGEDESSWLL-----HRLQG-----TIFYKLAKKTENPD-----VKFR------ 58 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHH--HHccCCCchHHH-----HHHHh-----HHHHHHHHhccCch-----HHHH------
Confidence 4667788999999999999999 778777654321 11112 12333343322332 1222
Q ss_pred hHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
.+--++++|.+++ .+.|+.+..++.+|.-+....-|+++..-.+++|.+.
T Consensus 59 ----------------yLl~sve~~s~a~-~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 59 ----------------YLLGSVECFSRAV-ELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred ----------------HHHHhHHHHHHHh-ccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 2345888999999 9999999999999988777778889999888888753
No 273
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.62 E-value=0.11 Score=51.32 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC-CC--CcHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARILSAQKRYEDAETILNAALDQTG-KW--EQGELLRT 393 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~--~~~~~~~~ 393 (446)
.+++.....+.+.|-+..|++.++-.+.+||. ||..+...+=....+.++|+=-+..++....... +| .-+..-|.
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 34455566777888888888888888888888 6644455555555666777777777766554211 00 01245667
Q ss_pred HHHHHHHhCCH---------------HHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQL---------------KGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~---------------~eA~~~~~~~l~l~~~ 420 (446)
.+.++...++. ++|-+.+.+++...|.
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 77788888887 8899999999888875
No 274
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.48 Score=47.46 Aligned_cols=218 Identities=15% Similarity=0.122 Sum_probs=143.3
Q ss_pred cCCHHHHHHHHHhhCCC------CCCcHH--------HHHHHHHHHHHCCChHHHHHHHHHHhc-CCCCCC-------Ch
Q 013299 174 AGDLSSLATQIEELLPG------IINRKE--------RYHILALCYYGAGEDLVALNLLRTLLS-GSEDPK-------CL 231 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~------~p~~~~--------~~~~lg~~~~~~g~~~eA~~~~~~al~-~~~~P~-------~~ 231 (446)
.|-+++|..+-+++|.. .|.... ..-++..|-.-.|++.+|+..+..+.. ....|. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 35556666665555533 121222 233455666668999999988776551 034555 23
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
..++.+|..| -.-+.++.|...|..+++.... ..+.+.+..++++.|...++ +...|+ +++.
T Consensus 368 ~ih~LlGlys-~sv~~~enAe~hf~~a~k~t~~--~dl~a~~nlnlAi~YL~~~~--------------~ed~y~-~ld~ 429 (629)
T KOG2300|consen 368 QIHMLLGLYS-HSVNCYENAEFHFIEATKLTES--IDLQAFCNLNLAISYLRIGD--------------AEDLYK-ALDL 429 (629)
T ss_pred HHHHHHhhHh-hhcchHHHHHHHHHHHHHhhhH--HHHHHHHHHhHHHHHHHhcc--------------HHHHHH-HHHh
Confidence 3445555444 4468999999999999996543 33566777888999876542 233333 3325
Q ss_pred hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHccCHHHHHHHH
Q 013299 312 TNMRD----------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 312 ~~P~~----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~------~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
+.|.| ..++|-.|...+.++++.||....++.++.. +.. +-.+..||.+..-.|+..|+...+
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence 66764 3466788999999999999999999999876 210 134557888999999999999999
Q ss_pred HHHHhhc---CCCCcHHHHHH---HHHHHHHhCC--HHHHHHHHH
Q 013299 376 NAALDQT---GKWEQGELLRT---KAKVQLVQGQ--LKGAVETYT 412 (446)
Q Consensus 376 ~~al~~~---p~~~~~~~~~~---~a~~~~~~g~--~~eA~~~~~ 412 (446)
.-++.+. | |.+..+|. +-.++...|+ -++.-+.|+
T Consensus 509 rpamqlAkKi~--Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 509 RPAMQLAKKIP--DIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred chHHHHHhcCC--CchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 8888654 5 65555553 3456777787 555555554
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.62 E-value=0.87 Score=45.35 Aligned_cols=200 Identities=15% Similarity=0.012 Sum_probs=108.5
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC-----C------ChHHHHHHHHHHhcCCCCCCCh---HHH
Q 013299 169 FAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA-----G------EDLVALNLLRTLLSGSEDPKCL---PAL 234 (446)
Q Consensus 169 ~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g------~~~eA~~~~~~al~~~~~P~~~---~a~ 234 (446)
..-.+.++..+|-+++.-...++|+.. ..-.+..+-... + +...=+..++..= ..|-|.- .-+
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q--s~DiDrqQLvh~L 382 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRIS-VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ--SYDIDRQQLVHYL 382 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcch-hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH--hhcccHHHHHHHH
Confidence 334467788888888888888888776 322221111100 0 0111122222222 2222221 122
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+..+.-+.+..+.-+.|+..++.+++..+ .+......+....-..|.+.-... ...++=..+.+++...- . .+.-
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~--~~~rLlkLe~fi~e~gl-~-~i~i 457 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMH--AIPRLLKLEDFITEVGL-T-PITI 457 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhcCC-C-cccc
Confidence 33444455555558899999999998543 332222222222222332210000 00011111222221110 0 1223
Q ss_pred CCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 315 RDLSILYRLSL--EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 315 ~~~~a~~~lg~--~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
.+.+.-+.|+. -++.+|+|.++.-+..=..+++| ++ .++..+|.+++..++|+||+.++...
T Consensus 458 ~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~-~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 458 SEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP-QAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH-HHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 45566666643 45679999999999999999999 54 99999999999999999999998643
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.62 E-value=0.68 Score=44.07 Aligned_cols=125 Identities=15% Similarity=-0.009 Sum_probs=84.0
Q ss_pred cCCCcHHHHHHHHHHHHHHHHh-hcCCCCH----HHHHHHHHHHHhcC-CHHHHHHHHHhhCCC----C---CCcH----
Q 013299 133 VPRNNIEEAILLLMILLRKVAL-KRIEWDP----SILDHLSFAFSIAG-DLSSLATQIEELLPG----I---INRK---- 195 (446)
Q Consensus 133 ~~~~~~~eA~~~l~~~~~~~~l-~~~p~~~----~~~~~lg~~l~~~~-~~~~A~~~~~~al~~----~---p~~~---- 195 (446)
..+|+++-|..++.++ +... ...|+.. ..+++.|..+...+ +++.|+..++++.++ . ...+
T Consensus 4 ~~~~~~~~A~~~~~K~--~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKA--KDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHh--hhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3567888888776443 1111 3345433 46778898888999 999999888888766 1 2222
Q ss_pred ---HHHHHHHHHHHHCCChH---HHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013299 196 ---ERYHILALCYYGAGEDL---VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECL 262 (446)
Q Consensus 196 ---~~~~~lg~~~~~~g~~~---eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 262 (446)
.....|+.++...+.++ +|...++.+- ...|+.+..+.....++.. .++.+++.+.+.+++...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~--~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLE--SEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence 24556788888877655 4555666666 6778888877666666555 677788888888888754
No 277
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.60 E-value=0.01 Score=40.93 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
++++.+|..+.++|+|++|..+++.+|+..| +|..+...+..+..+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP--~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP--DNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999 898888777666543
No 278
>PRK10941 hypothetical protein; Provisional
Probab=96.55 E-value=0.024 Score=53.48 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.+.++=.+|.+.++++.|+.+.++.+.++|+++ .-|.-.|.++..+|.+..|..-++..++.-| +++.+-..+..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp-~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P--~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDP-YEIRDRGLIYAQLDCEHVALSDLSYFVEQCP--EDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC--CchhHHHHHHHH
Confidence 345778888999999999999999999999995 8888999999999999999999999999999 777766554443
No 279
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.54 E-value=0.98 Score=44.98 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=44.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 360 RILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 360 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
.-++.+|+|.++.-+..=..+..| .+.++-.+|.++....++++|+.++.
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP---S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP---SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 447789999999988888888999 78999999999999999999999987
No 280
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.54 E-value=0.26 Score=47.98 Aligned_cols=124 Identities=15% Similarity=0.038 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---ccCHHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA---QKRYEDAET 373 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~---~g~~~eA~~ 373 (446)
..+..+..|++|+ +.+|++...+..+=.+..+..+.++-.+..++++..+|++. ..|..+-..... .-.+++...
T Consensus 46 ~~E~klsilerAL-~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~-~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 46 LAERKLSILERAL-KHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP-ELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHhccCcHHHHHH
Confidence 4578889999999 99999999888777777788899999999999999999984 888754333222 224667778
Q ss_pred HHHHHHhhcCCC----------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 374 ILNAALDQTGKW----------------EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 374 ~~~~al~~~p~~----------------~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
.|.++++.-... .-..++..++..+.+.|-.+.|+..++.+++++=..+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 887777432100 0134456778889999999999999999999974333
No 281
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.49 E-value=0.0041 Score=36.80 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC
Q 013299 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 196 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~ 229 (446)
.+|+.+|.++...|++++|+..|++++ +.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~--~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL--ELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH--ccCCC
Confidence 456777777777777777777777777 66665
No 282
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=1.1 Score=44.92 Aligned_cols=120 Identities=17% Similarity=0.021 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHH
Q 013299 295 ATRQAKALQALVSAARST---NMR-------DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARIL 362 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~---~P~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~~la~~~ 362 (446)
.|++.+|++....+. .. -|. .+..++-+|.-..--|-++.|+..|..|+++-..-.. -+-.++|.+|
T Consensus 336 ~~~~~~al~~i~dm~-~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMK-NWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred hCCHHHHHHHHHHHH-HHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 467777877666655 43 344 4567788888777889999999999999887644212 2345789999
Q ss_pred HHccCHHHHHHHHHHHHhhcCCCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 363 SAQKRYEDAETILNAALDQTGKWE--------QGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~p~~~--------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
...|+-++--+..+. +.|.+. ...++|..|.....++++.||....++.|+..
T Consensus 415 L~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 998876654444433 345110 14567888888999999999999999999886
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.46 E-value=0.66 Score=45.39 Aligned_cols=113 Identities=15% Similarity=0.026 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-CC---
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG----SNLKGWLLMARILSAQKRYEDAETILNAALDQT-GK--- 384 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~--- 384 (446)
.......|...+.+..+.|+++-|...+.++...++. .+ .+.+..+.++...|+..+|+..++..+... .+
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~-~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLP-RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCc-chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 4566778899999999999999999999999887632 33 677778999999999999999998888711 10
Q ss_pred ----------------------------CCcHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 385 ----------------------------WEQGELLRTKAKVQLVQ------GQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 385 ----------------------------~~~~~~~~~~a~~~~~~------g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
.....++..+|.-.... +..++++..|++++++.|.....+-
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 01245566777777777 8899999999999999887666543
No 284
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.45 E-value=0.025 Score=46.62 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 317 LSILYRLSLEYAEQR---KLNAAHYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~---~~~~A~~~~~~al~-l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
.+..+++++++.... +..+.+.++...++ -.|+..-++.+.|+..+.+.|+|+.++.+++..++..| +|..+.-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~--~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP--NNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC--CcHHHHH
Confidence 567888988888754 56678889999886 56665457888999999999999999999999999999 7777766
Q ss_pred HHHHHHHH
Q 013299 393 TKAKVQLV 400 (446)
Q Consensus 393 ~~a~~~~~ 400 (446)
.+-.+..+
T Consensus 110 Lk~~ied~ 117 (149)
T KOG3364|consen 110 LKETIEDK 117 (149)
T ss_pred HHHHHHHH
Confidence 65554443
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.41 E-value=0.059 Score=46.21 Aligned_cols=109 Identities=14% Similarity=-0.038 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
+.+..+++...+...- .+.|+.++.-..-|+++...|++.+|+..++....-.|..+ .+--.++.++..+|+.+ +.
T Consensus 22 ~~~~~~D~e~lL~ALr-vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p-~~kALlA~CL~~~~D~~--Wr 97 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR-VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP-YAKALLALCLYALGDPS--WR 97 (160)
T ss_pred ccCChHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHHcCChH--HH
Confidence 3457788888888887 89999999999999999999999999999999888888885 88888999999888865 33
Q ss_pred H-HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 374 I-LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 374 ~-~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
. -+.+++..| ++.+.. +...+....+...|...
T Consensus 98 ~~A~evle~~~---d~~a~~-Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 98 RYADEVLESGA---DPDARA-LVRALLARADLEPAHEA 131 (160)
T ss_pred HHHHHHHhcCC---ChHHHH-HHHHHHHhccccchhhh
Confidence 3 344555554 344443 33444445555555443
No 286
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.39 E-value=0.0052 Score=36.35 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+|..+|.++..+|++++|+.+++++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 444455555555555555555555554444
No 287
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.36 E-value=0.0066 Score=39.19 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCC
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFP 49 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~ 49 (446)
+.++.+.|.+|..+|++++|+..++++++..++.+..++|
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccccc
Confidence 5678899999999999999999999999987766544333
No 288
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.34 E-value=0.012 Score=55.01 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
..||+..++.|. -....|+.++|...|..|++++|+++ +++.-+|.+....++.-+|-.+|-+
T Consensus 113 ~kEA~~Al~~A~----------------~~~~~Gk~ekA~~lfeHAlalaP~~p-~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 113 VKEAILALKAAG----------------RSRKDGKLEKAMTLFEHALALAPTNP-QILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred hHHHHHHHHHHH----------------HHHhccchHHHHHHHHHHHhcCCCCH-HHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 356666666655 34668999999999999999999996 9999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHH
Q 013299 378 ALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~ 398 (446)
|+...| .|.+++.+++...
T Consensus 176 ALtisP--~nseALvnR~RT~ 194 (472)
T KOG3824|consen 176 ALTISP--GNSEALVNRARTT 194 (472)
T ss_pred eeeeCC--CchHHHhhhhccc
Confidence 999999 8999998876543
No 289
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.19 Score=49.25 Aligned_cols=100 Identities=9% Similarity=0.072 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC----HH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR----YE 369 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~----~~ 369 (446)
...++-+.....++ +.+|++..+|+.+..++.+.+ ++..=+..+++++++||.+ ..+|...-.+.....+ ..
T Consensus 89 ~~ld~eL~~~~~~L-~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN-fh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 89 ALLDEELKYVESAL-KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN-FHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HhhHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc-ccchHHHHHHHHHHhcccccch
Confidence 34678889999999 999999999999999999876 4788999999999999999 5999988777665544 35
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
+=+++.++++..++ .|..+|.++..++.
T Consensus 167 ~El~ftt~~I~~nf--SNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 167 EELEFTTKLINDNF--SNYSAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHhccc--hhhhHHHHHHHHHH
Confidence 66889999999899 89999999887775
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.26 E-value=0.12 Score=44.34 Aligned_cols=84 Identities=12% Similarity=-0.059 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
.+..+..+-...++.+++...+...-.+.|..+ +.-..-|+++...|++.+|+..++...+..| ..+.+--.++.|+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~-e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~--~~p~~kALlA~CL 88 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFP-ELDLFDGWLHIVRGDWDDALRLLRELEERAP--GFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC--CChHHHHHHHHHH
Confidence 344445555667899999999999999999995 9999999999999999999999999988888 7777777888888
Q ss_pred HHhCCHH
Q 013299 399 LVQGQLK 405 (446)
Q Consensus 399 ~~~g~~~ 405 (446)
..+|+++
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8888753
No 291
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.21 E-value=0.24 Score=49.02 Aligned_cols=162 Identities=16% Similarity=0.041 Sum_probs=102.5
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhC---------CC-----C------------CCcHH---HHHHHHH
Q 013299 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL---------PG-----I------------INRKE---RYHILAL 203 (446)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al---------~~-----~------------p~~~~---~~~~lg~ 203 (446)
++..+|...+++..++.++..+|+++.|.+..++|+ .. + +.|-. +.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 468899999999999999999999999998888884 11 1 22222 4555678
Q ss_pred HHHHCCChHHHHHHHHHHhcCCCCCC-ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhH
Q 013299 204 CYYGAGEDLVALNLLRTLLSGSEDPK-CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS 282 (446)
Q Consensus 204 ~~~~~g~~~eA~~~~~~al~~~~~P~-~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 282 (446)
.+.+.|-+..|++..+-.+ .+||. ||...++....+..+.++++==+..++.........--...+..-+..+.++.
T Consensus 112 ~L~~RG~~rTAlE~~KlLl--sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLL--SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHhcCcHHHHHHHHHHHH--hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 8899999999999999999 99999 88766555555555567776566666654431010000001112233333443
Q ss_pred hhhhh----hhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 283 AQSKV----AITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 283 ~~~~~----~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
..++. ......+.+..++|-..+++|+ ...|.-.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai-~~fP~vl 227 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAI-LRFPWVL 227 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHH-HHhHHHH
Confidence 33321 0001112233478888888888 6665533
No 292
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=2.7 Score=45.98 Aligned_cols=210 Identities=11% Similarity=0.021 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
-+.|++|..+|.+..+.|...+|++.|-+| ++|..|.....+-.+.|.|++=+..+.-|-+....|.--..+.+
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~- 1174 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIF- 1174 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHH-
Confidence 467888999999988889989998888654 56777778888888888998888888777742234543222221
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
++.+.++..|-.++. ..|+. +.. -..|.-.+. .+.|+.|.-+|..+
T Consensus 1175 ---AyAkt~rl~elE~fi------~gpN~----A~i-~~vGdrcf~-----------~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1175 ---AYAKTNRLTELEEFI------AGPNV----ANI-QQVGDRCFE-----------EKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred ---HHHHhchHHHHHHHh------cCCCc----hhH-HHHhHHHhh-----------hhhhHHHHHHHHHh---------
Confidence 223344543333322 22321 111 122221111 13444444444332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-------------------------CCHHHHHHHHHHHHHccCHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-------------------------SNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-------------------------~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
.-|-.|+..+...|+|..|....++|-....- + ++-+..+-..|...|-|+|-+
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivh-adeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVH-ADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEe-hHhHHHHHHHHHhcCcHHHHH
Confidence 23556677777777777777777666332210 1 122233445577778888888
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
..++.++.+.- -+-..+--+|.+| ..=+++.-.+++
T Consensus 1300 sl~Ea~LGLER--AHMgmfTELaiLY-skykp~km~EHl 1335 (1666)
T KOG0985|consen 1300 SLLEAGLGLER--AHMGMFTELAILY-SKYKPEKMMEHL 1335 (1666)
T ss_pred HHHHhhhchhH--HHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence 88888887754 3333333344433 333455444443
No 293
>PRK10941 hypothetical protein; Provisional
Probab=96.13 E-value=0.03 Score=52.75 Aligned_cols=72 Identities=21% Similarity=0.090 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 164 ~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
..++-.++.+.++++.|+.+.++.+.++|+++.-+--.|.+|.++|.+..|..-++.-+ ..-|+++.+-...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl--~~~P~dp~a~~ik 255 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV--EQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HhCCCchhHHHHH
Confidence 34667788899999999999999999999999999999999999999999999999999 8999999876543
No 294
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.12 E-value=0.18 Score=40.73 Aligned_cols=85 Identities=20% Similarity=0.074 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hcCCCCHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMR------------DLSILYRLSLEYAEQRKLNAAHYYAKMLLK-------LEGGSNLKGW 355 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-------l~P~~~~~~~ 355 (446)
.+.+++|...+++|. +..-. |+-.+-.|+-++...|+|++++....++|. ++.+. ...|
T Consensus 22 ~g~~~eAa~s~r~AM-~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde-GklW 99 (144)
T PF12968_consen 22 DGAYEEAAASCRKAM-EVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE-GKLW 99 (144)
T ss_dssp HT-HHHHHHHHHHHH-HHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH-HHHH
T ss_pred hhhHHHHHHHHHHHH-HHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc-chhH
Confidence 467899999999998 75422 334566788889999999998877777664 55554 2444
Q ss_pred ----HHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 356 ----LLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 356 ----~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
++.|..+..+|+.++|+..|+.+-+.
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 47889999999999999999988753
No 295
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.07 E-value=0.0079 Score=60.81 Aligned_cols=99 Identities=16% Similarity=0.077 Sum_probs=86.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 403 (446)
|.-+..+|+.-.|+.++.+|+-+.|........+||.++...|-.-+|-..+.+++.++. ..+..++.+|..++.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~--sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS--SEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc--cCchHHHhcchhHHHHhh
Confidence 444556899999999999999999976436788999999999999999999999999986 677889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 013299 404 LKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 404 ~~eA~~~~~~~l~l~~~~~~~ 424 (446)
.+.|++.++.++++.|+..+-
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhh
Confidence 999999999999998876543
No 296
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.03 E-value=0.0095 Score=53.58 Aligned_cols=61 Identities=20% Similarity=0.097 Sum_probs=55.9
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
.+.+.++.+.|.+.|.+++.+.|+....|+.+|......|+++.|...|++++ +++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L--~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL--ELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH--cCCccccc
Confidence 45677899999999999999999999999999999999999999999999999 89998754
No 297
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=95.91 E-value=1.3 Score=41.79 Aligned_cols=138 Identities=9% Similarity=-0.089 Sum_probs=74.0
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh---------------cCCCCCCChHHHHHHHHHHhc
Q 013299 179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL---------------SGSEDPKCLPALLIASKICGE 243 (446)
Q Consensus 179 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------------~~~~~P~~~~a~~~~~~~~~~ 243 (446)
.|+.+- +.-...-++++.|..+|..|++.|++.+|..+|-.+- . .-.|.....+...+-+.+.
T Consensus 75 ~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~-~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 75 AAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST-KGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp HHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH-HTSS--HHHHHHHHHHHHH
T ss_pred HHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH-hcCCcchhHHHHHHHHHHH
Confidence 444444 4444556788899999999999999988887753311 1 3456666666655555555
Q ss_pred CCCCHHHHHHHHHHHHHH----cC---------CCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 244 YPDLAEEGATFASRALEC----LG---------DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~----~~---------~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
-.++...|...+..-++. .| +...++.-..++.+-.|-.. ....+..-.+.|+..+
T Consensus 153 ~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~----------~~~~F~~L~~~Y~~~L- 221 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD----------NLPLFKKLCEKYKPSL- 221 (260)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-----------HHHHHHHHHHTHH---
T ss_pred HhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC----------cHHHHHHHHHHhCccc-
Confidence 567888888776666654 11 11111222233333322211 1234555556667777
Q ss_pred hhCCCCHHHHHHHHHHHHH
Q 013299 311 STNMRDLSILYRLSLEYAE 329 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~ 329 (446)
+.+|.-...+..+|..|..
T Consensus 222 ~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 222 KRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp -HHHHTHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHCC
Confidence 6777777777777777765
No 298
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.76 E-value=0.018 Score=51.89 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.+.|.+.|.+++ ++.|+...-|+.+|....+.|+++.|...|++.++++|++
T Consensus 10 D~~aaaely~qal-~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 10 DAEAAAELYNQAL-ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ChHHHHHHHHHHh-hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3444444455555 4555555555555544444455555555555555554443
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=0.74 Score=39.97 Aligned_cols=62 Identities=11% Similarity=-0.020 Sum_probs=41.6
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
|..++-+-+.|+-++|...|..+-+.. .. .+ =.-+..+.+.+..+.|+..+|+..|..+-..
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg--------~g---~Y------pvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTG--------YG---SY------PVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcC--------CC---cc------hHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 455666667777777777666544321 10 00 1125566778889999999999999998776
No 300
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=3.4 Score=45.31 Aligned_cols=286 Identities=14% Similarity=0.122 Sum_probs=173.3
Q ss_pred HHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCcc--------cc---ccCccccCCCcHH
Q 013299 71 ELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNL--------RS---QMGSSFVPRNNIE 139 (446)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~--------~~---~~~~~~~~~~~~~ 139 (446)
..++-.+-..|=|+.+++++-.|+.. +++ .++-.+++.......+..+ .+ ..+.+.+..+-+|
T Consensus 992 kAfMtadLp~eLIELLEKIvL~~S~F-se~-----~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLDNSVF-SEN-----RNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCccc-ccc-----hhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 35677788888899999987663222 121 1222222222111111000 01 1233455566677
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 013299 140 EAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 140 eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
||...+.+ ..-+..+.. ......+..++|.+.-++. +.++.|..+|.+..+.|+..+|+..|-
T Consensus 1066 EAF~ifkk---------f~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1066 EAFAIFKK---------FDMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred HHHHHHHH---------hcccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 77665422 122222221 2233456677777666654 468999999999999999999999998
Q ss_pred HHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHH
Q 013299 220 TLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA 299 (446)
Q Consensus 220 ~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 299 (446)
++= ||.+. ...-.++ .+.|.+++-+.++.-|-+...... +-..|-.+|.+. ++..
T Consensus 1129 kad----Dps~y---~eVi~~a-~~~~~~edLv~yL~MaRkk~~E~~------id~eLi~AyAkt-----------~rl~ 1183 (1666)
T KOG0985|consen 1129 KAD----DPSNY---LEVIDVA-SRTGKYEDLVKYLLMARKKVREPY------IDSELIFAYAKT-----------NRLT 1183 (1666)
T ss_pred hcC----CcHHH---HHHHHHH-HhcCcHHHHHHHHHHHHHhhcCcc------chHHHHHHHHHh-----------chHH
Confidence 844 67654 3333343 346899999999988877554321 112222233322 2222
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 300 eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
.++.-+ ..|++++. -..|.-+++.|.|+.|.-+|.- ..-|-.|+..+..+|+|+.|++.-++|-
T Consensus 1184 ----elE~fi--~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1184 ----ELEEFI--AGPNVANI-QQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred ----HHHHHh--cCCCchhH-HHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 223333 56776654 4678888999999999888853 3667889999999999999999888774
Q ss_pred hhcCCC--------C----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 380 DQTGKW--------E----------------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 380 ~~~p~~--------~----------------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
...- | | +.+=+--+...|...|-|+|-+..++.+|.+-.-+
T Consensus 1248 s~kt-WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1248 STKT-WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred chhH-HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 3211 1 0 11222344566788899999999999888775443
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.46 E-value=0.23 Score=41.93 Aligned_cols=73 Identities=16% Similarity=0.032 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~ 369 (446)
.+..+++...+...- -+.|+.+++-..-|.++...|++++|+..++....-.|..+ .+--.++.++..+|+.+
T Consensus 23 ~~d~~D~e~lLdALr-vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALR-VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP-YGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHH-HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch-HHHHHHHHHHHhcCChH
Confidence 455667777776666 77888888888888888888888888888888777666654 66667777777777654
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=1.6 Score=37.91 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~ 362 (446)
.+.-.||..-.+.|++.+|.+.|..... +.+.| ....+.+.+.
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~-Da~ap-rnirqRAq~m 210 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAP-RNIRQRAQIM 210 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc-cccCc-HHHHHHHHHH
Confidence 3444566666666666666666666544 44433 4444555444
No 303
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.39 E-value=0.08 Score=53.88 Aligned_cols=101 Identities=15% Similarity=0.012 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLS-ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
.|....|+.++..|+ -..|.... .+.+|+.++...|..-+|-..+.+++.++-..| -.++.+|..+..+.+.+.|++
T Consensus 620 ~gn~~~a~~cl~~a~-~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep-l~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL-NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP-LTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHh-ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc-hHHHhcchhHHHHhhhHHHHH
Confidence 366789999999999 89988665 467999999999999999999999999997776 888999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
.++.|++++| .++++...+-.+-.
T Consensus 698 ~~~~a~~~~~--~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTT--KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCC--CChhhHHHHHHHHH
Confidence 9999999999 78777665544433
No 304
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.33 E-value=0.18 Score=50.57 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR-YEDAETILNA 377 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~-~~eA~~~~~~ 377 (446)
..-+..|+.|+ ..-|.|+..|.+......+.+.+.+--..|.+++...|+++ ..|..-|.=.+.-+. .+.|.+.+.+
T Consensus 88 ~rIv~lyr~at-~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~-dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRAT-NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP-DLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc-hhHHhhhhhHHhhccchHHHHHHHHH
Confidence 34566788888 88888888888776666666668888888888888888885 888877776666666 7888888888
Q ss_pred HHhhcCCCCcHHHHH
Q 013299 378 ALDQTGKWEQGELLR 392 (446)
Q Consensus 378 al~~~p~~~~~~~~~ 392 (446)
+|+.+| +++.+|.
T Consensus 166 gLR~np--dsp~Lw~ 178 (568)
T KOG2396|consen 166 GLRFNP--DSPKLWK 178 (568)
T ss_pred HhhcCC--CChHHHH
Confidence 888888 7766653
No 305
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.89 Score=46.23 Aligned_cols=237 Identities=16% Similarity=0.047 Sum_probs=119.5
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE----RYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~ 229 (446)
....|.++....+-+..+...|+.+.|+..++..++ +.--. -++.+|.++..+.+|..|-..+.... .++-=
T Consensus 260 ~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~--desdW 335 (546)
T KOG3783|consen 260 RKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR--DESDW 335 (546)
T ss_pred HHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--hhhhh
Confidence 456688888888888888888888888888888887 22222 34567888888888999998888887 33332
Q ss_pred ChHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHH
Q 013299 230 CLPALLIASKICGEY--------PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 230 ~~~a~~~~~~~~~~~--------~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
.--.|.+.++.|+.+ .++.+.|-.+.+.+.+.........+...+. ..++
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~----------------------~RKv 393 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI----------------------VRKV 393 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH----------------------HHHH
Confidence 222333444444432 2233333333333222211000000000000 0111
Q ss_pred HHHHHHHHHhhCCCCHHHH--HHHHHHHHH--cCCHHHHH--HHHHHHHhh-cCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 302 LQALVSAARSTNMRDLSIL--YRLSLEYAE--QRKLNAAH--YYAKMLLKL-EGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~a~--~~lg~~~~~--~~~~~~A~--~~~~~al~l-~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.+ |.+-. .++|..+.+. +-+.+++-. ....++.+ ..-.+.-.. ++|+..--+..+|.++..+|+...|..+
T Consensus 394 er-f~~~~-~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 394 ER-FVKRG-PLNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKC 471 (546)
T ss_pred HH-Hhccc-cccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11 11111 1122222221 233333221 11111111 111111122 3443112345667888888888888877
Q ss_pred HHHHHhhcC-----CCCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q 013299 375 LNAALDQTG-----KWEQGELLRTKAKVQLVQGQ-LKGAVETYTHLLAAL 418 (446)
Q Consensus 375 ~~~al~~~p-----~~~~~~~~~~~a~~~~~~g~-~~eA~~~~~~~l~l~ 418 (446)
+...++..- -|-.+-++|-+|.++..+|. +.++.+.+.+|-+..
T Consensus 472 f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 472 FKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 777763211 12346677778888877777 777777777665544
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.11 E-value=0.05 Score=34.88 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
++.+||.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4455555555555555555555555443
No 307
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.08 E-value=0.13 Score=51.62 Aligned_cols=84 Identities=12% Similarity=-0.027 Sum_probs=73.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHhcCCCCC
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~~~P 228 (446)
+..++.+.+.|+..|.....-..+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++| +.+|
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL--R~np 171 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL--RFNP 171 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh--hcCC
Confidence 4566777899999998877666667779999999999999999999999999998888887 889999999999 9999
Q ss_pred CChHHHH
Q 013299 229 KCLPALL 235 (446)
Q Consensus 229 ~~~~a~~ 235 (446)
+++..+.
T Consensus 172 dsp~Lw~ 178 (568)
T KOG2396|consen 172 DSPKLWK 178 (568)
T ss_pred CChHHHH
Confidence 9998764
No 308
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.07 E-value=0.19 Score=45.82 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHccCHH-------HHHHHHHHHHhhc--CC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 353 KGWLLMARILSAQKRYE-------DAETILNAALDQT--GK--WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~-------eA~~~~~~al~~~--p~--~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..+..+||++..+|+.+ .|+..|+++++.. |. -+...+.+.+|.+..+.|++++|...|.+++..
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34555666666666633 3333444444322 10 022456666777777777777777777776654
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=3.5 Score=42.53 Aligned_cols=133 Identities=11% Similarity=-0.109 Sum_probs=83.1
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHH--HHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHIL--ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~l--g~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA 251 (446)
.|...-++..+..-+.++|.+++.+... ...+...++...+...+..++ ..+|++..++.+++...-....
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~L~~ale~~~~----- 116 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPL--SVNPENCPAVQNLAAALELDGL----- 116 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhH--hcCcccchHHHHHHHHHHHhhh-----
Confidence 3444456666666677777777664433 555666677767777777777 6777776666555433211111
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH------HH
Q 013299 252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL------SL 325 (446)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l------g~ 325 (446)
...-+...-+.+. +..|+|.+....+ |.
T Consensus 117 ---------------------------------------------~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~ 150 (620)
T COG3914 117 ---------------------------------------------QFLALADISEIAE-WLSPDNAEFLGHLIRFYQLGR 150 (620)
T ss_pred ---------------------------------------------HHHHHHHHHHHHH-hcCcchHHHHhhHHHHHHHHH
Confidence 1222333334466 6777777766655 77
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (446)
.....|+..++.....+++.+.|+++ .....+..
T Consensus 151 ~~~~l~~~~~~~~~l~~~~d~~p~~~-~~~~~~~~ 184 (620)
T COG3914 151 YLKLLGRTAEAELALERAVDLLPKYP-RVLGALMT 184 (620)
T ss_pred HHHHhccHHHHHHHHHHHHHhhhhhh-hhHhHHHH
Confidence 77778888999999999999998874 55444444
No 310
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.03 E-value=0.15 Score=51.34 Aligned_cols=86 Identities=16% Similarity=0.060 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~---~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
.....|+..|.+++ ..-|+....+.+.+.++++. |+.-.|+..+-.|++++|.. ..+|+.|+.++..++++.+|+
T Consensus 388 ~~~~~~i~~~s~a~-q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 388 SIVSGAISHYSRAI-QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHHh-hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHhh
Confidence 35678999999999 99999999999999888875 57888999999999999998 699999999999999999999
Q ss_pred HHHHHHHhhcC
Q 013299 373 TILNAALDQTG 383 (446)
Q Consensus 373 ~~~~~al~~~p 383 (446)
.....+...+|
T Consensus 466 ~~~~alq~~~P 476 (758)
T KOG1310|consen 466 SCHWALQMSFP 476 (758)
T ss_pred hhHHHHhhcCc
Confidence 99888877788
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.01 E-value=0.12 Score=51.51 Aligned_cols=126 Identities=15% Similarity=0.089 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|+.-.|-.-...++ +..|.+|......+.+....|+|+.|...+.-+-.+-..-. .+..-+-.-++.+||+++|...-
T Consensus 303 gd~~aas~~~~~~l-r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~-~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 303 GDIIAASQQLFAAL-RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD-STLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred cCHHHHHHHHHHHH-HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc-hHHHHHHHhhhchhhHHHHHHHH
Confidence 55667777888899 89999999999999999999999999998877655433332 55555667788999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
+-.+...- +++++.-.-+......|-+|++.-.|++++.++|..+.+|
T Consensus 381 ~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 381 EMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 88886554 5667776667777888999999999999999998755544
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.84 E-value=0.38 Score=43.83 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=55.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhcCCH-------HHHHHHHHhhCCCCC------CcHHHHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWD--PSILDHLSFAFSIAGDL-------SSLATQIEELLPGII------NRKERYH 199 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~--~~~~~~lg~~l~~~~~~-------~~A~~~~~~al~~~p------~~~~~~~ 199 (446)
.-.+++|+..+..++.-..+...+.. +..+..++.++...|+. ..|.+.|++++.... +.....|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34578888877666443333332332 34556778888888874 445555666654332 2245667
Q ss_pred HHHHHHHHCCChHHHHHHHHHHh
Q 013299 200 ILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 200 ~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.+|.+..+.|++++|...|.+++
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 77888888888888888888887
No 313
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.77 E-value=0.35 Score=38.67 Aligned_cols=98 Identities=16% Similarity=0.021 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSIL---YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~---~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~ 369 (446)
.+.|++-+|++..+..+ ..++++...| ..-|.++.++.. ..-||+ ....+.+|
T Consensus 7 ~~rGnhiKAL~iied~i-~~h~~~~~~~~lh~~QG~if~~lA~-----------~ten~d--~k~~yLl~---------- 62 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLI-SRHGEDESSWLLHRLQGTIFYKLAK-----------KTENPD--VKFRYLLG---------- 62 (111)
T ss_pred HHccCHHHHHHHHHHHH-HHccCCCchHHHHHHHhHHHHHHHH-----------hccCch--HHHHHHHH----------
Confidence 45677888888888888 7887777543 333444432211 112333 23333333
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
+++.+.++..+.| +.+..++.+|.-+....-|++++.-.+++|.+
T Consensus 63 -sve~~s~a~~Lsp--~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 -SVECFSRAVELSP--DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -hHHHHHHHhccCh--hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4667777777777 66666677666655555666666666666655
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.71 E-value=4.2 Score=43.42 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCC---CCC------cHHHHHHHHHHHHHCCChHHHHHHHH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPG---IIN------RKERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~---~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
...+....-.+++..|....+.+... .|. .+-.++-.|..+...|+.+.|+..|.
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 35677777889998898887766544 232 47789999999999999999999998
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.68 E-value=0.16 Score=42.82 Aligned_cols=75 Identities=17% Similarity=0.099 Sum_probs=64.1
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 328 ~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
...++.+++...+...--+.|+.+ +.-..-|+++...|++.||+..++...+..| ..+-.--.++.|+..+|+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~-e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~--~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLK-ELDMFDGWLLIARGNYDEAARILRELLSSAG--APPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCcc-ccchhHHHHHHHcCCHHHHHHHHHhhhccCC--CchHHHHHHHHHHHhcCChH
Confidence 348899999999999999999995 9999999999999999999999999988877 55666667777777777653
No 316
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.67 E-value=0.12 Score=52.14 Aligned_cols=105 Identities=10% Similarity=-0.093 Sum_probs=83.8
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH
Q 013299 330 QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ---KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG 406 (446)
Q Consensus 330 ~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~e 406 (446)
.+....|+..|.+++.--|+. ...+.+.+.++++. |+.-.|+.-+..|++++| ....+||.++.++.+.+++.+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~-~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~--s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDA-IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP--SIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hHHHHHHHHHHHHHhhhccch-hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh--HHHHHHHHHHHHHHHHhhHHH
Confidence 456778999999999999998 59999999999886 455577778889999999 889999999999999999999
Q ss_pred HHHHHHHHHHHHhh----hhhhccCCcchhhHHhh
Q 013299 407 AVETYTHLLAALQV----QTKTFSSDKRFYKVYFM 437 (446)
Q Consensus 407 A~~~~~~~l~l~~~----~~~~~~~~~~~~~~~~~ 437 (446)
|+++...+....|- +-.+-..+.+.+.+.|.
T Consensus 464 al~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~ 498 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTDVARQNFVLCLPRDISAALFS 498 (758)
T ss_pred hhhhHHHHhhcCchhhhhhhhhhccccchHHHhcc
Confidence 99998877777772 22233344555555443
No 317
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.74 Score=45.27 Aligned_cols=169 Identities=14% Similarity=0.035 Sum_probs=112.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC--hHHHHH
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIA------------GDLSSLATQIEELLPGIINRKERYHILALCYYGAGE--DLVALN 216 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~eA~~ 216 (446)
..++..+|+...+|+..-.++... .-.++-+.....+++.+|+.-.+|+.+-.++.+.+. +..=++
T Consensus 53 ~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~ 132 (421)
T KOG0529|consen 53 SELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQ 132 (421)
T ss_pred HHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHH
Confidence 456788888888887544433322 134555677888999999999999999999998775 477889
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhch-H
Q 013299 217 LLRTLLSGSEDPKCLPALLIASKIC---GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD-F 292 (446)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~---~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~-~ 292 (446)
..++++ +.||.|..++.+.--++ -...+...+=+.+.+++|..... ...+|.+....+...-...... .
T Consensus 133 lcek~L--~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfS-----NYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 133 LCEKAL--KQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFS-----NYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred HHHHHH--hcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccch-----hhhHHHHHHHHHHHhccccccCcc
Confidence 999999 89999988875432222 22222356677888888884222 2457777766554221100000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEY 327 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~ 327 (446)
.-......-++....|+ -.||+|+.+|++.=+.+
T Consensus 206 ~~~~~l~sEle~v~sai-FTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAI-FTDPEDQSCWFYHRWLL 239 (421)
T ss_pred CCHHHHHHHHHHHHHHH-hcCccccceeeehHHhh
Confidence 01234567788889999 99999999997644443
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.57 E-value=0.61 Score=41.16 Aligned_cols=99 Identities=19% Similarity=0.101 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH----H
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE----L 390 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P--~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~----~ 390 (446)
..++..+|..|.+.|++++|++.|.++..-.. ++-...+.++-.+-...|++.....++.++-..-.+.++.+ +
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46788999999999999999999999876432 22235667778888889999999999999976533112322 3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
....|...+..|+|.+|-+.|-.++
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 3455777788899999888876553
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.29 E-value=0.35 Score=40.03 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHH
Q 013299 295 ATRQAKALQALVSAARS-TNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL 357 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~-~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~ 357 (446)
..+..+.+.+++..+ + -+|. .-+.+|+|+..+++.++|+.|+.+++..++.+|+++ ++.-.
T Consensus 48 ~~dv~~GI~iLe~l~-~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~-Qa~~L 110 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLL-KSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR-QALEL 110 (149)
T ss_pred hHHHHHhHHHHHHHh-hhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH-HHHHH
Confidence 356789999999999 7 4444 357889999999999999999999999999999995 66554
No 320
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.01 E-value=0.18 Score=31.66 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhcCC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYY--AKMLLKLEGG 349 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~--~~~al~l~P~ 349 (446)
+.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4455666666666666666666 3355555554
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.92 E-value=6 Score=37.60 Aligned_cols=133 Identities=17% Similarity=0.046 Sum_probs=83.6
Q ss_pred HHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCC-cHHHHHHHHHHHHHH-
Q 013299 74 KLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRN-NIEEAILLLMILLRK- 151 (446)
Q Consensus 74 ~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~eA~~~l~~~~~~- 151 (446)
..+|+++.|..+|.|+=......+|+... .++..+..-| ......+ ++++|+..+..++.-
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~----~La~~~yn~G-------------~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAE----ELARVCYNIG-------------KSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHH----HHHHHHHHHH-------------HHHHHcCCChHHHHHHHHHHHHHH
Confidence 57999999999999986652234565432 3333322211 1122344 788998887655210
Q ss_pred ----HHhhcCCCC----HHHHHHHHHHHHhcCCHH---HHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013299 152 ----VALKRIEWD----PSILDHLSFAFSIAGDLS---SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 152 ----~~l~~~p~~----~~~~~~lg~~l~~~~~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
......|+- ..++..++.++...+.++ +|....+.+-.-.|+.+..+.---.++...++.+++...+.+
T Consensus 67 ~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 67 EKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMR 146 (278)
T ss_pred HhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHH
Confidence 011122222 235567888888877664 566666777777788888775544555558999999999999
Q ss_pred Hhc
Q 013299 221 LLS 223 (446)
Q Consensus 221 al~ 223 (446)
.+.
T Consensus 147 mi~ 149 (278)
T PF08631_consen 147 MIR 149 (278)
T ss_pred HHH
Confidence 993
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.91 E-value=10 Score=40.40 Aligned_cols=314 Identities=11% Similarity=0.006 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCC
Q 013299 79 PRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIE 158 (446)
Q Consensus 79 ~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p 158 (446)
..-||..++-+++ .+.+.|.....+..++|..|+.. -.++++|...+.++. .+...+
T Consensus 37 I~~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~e-------------------T~n~~~Ae~~L~k~~---~l~~~~ 93 (608)
T PF10345_consen 37 IATAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEE-------------------TENLDLAETYLEKAI---LLCERH 93 (608)
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHH---Hhcccc
Confidence 3557777777775 34556766666677788776643 346888887764321 122225
Q ss_pred CCHH----HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC----cHHHHHHHH--HHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 159 WDPS----ILDHLSFAFSIAGDLSSLATQIEELLPGIIN----RKERYHILA--LCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 159 ~~~~----~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg--~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+..+ +.+.++.++.+.+... |...++++|+..-+ .....+.+- ......+++..|+..++........+
T Consensus 94 ~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 94 RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 4443 3346778888888777 99999998876544 222223332 22223379999999999988312224
Q ss_pred CChHHHH----HHHHHHhcCCCCHHHHHHHHHHHHHHcC-----CCcchhhhHHHHHh-hch-hHhhhhhhhchHHHHHH
Q 013299 229 KCLPALL----IASKICGEYPDLAEEGATFASRALECLG-----DGCDQMESTANCLL-GIS-LSAQSKVAITDFDRATR 297 (446)
Q Consensus 229 ~~~~a~~----~~~~~~~~~~~~~~eA~~~~~~al~~~~-----~~~~~~~~~a~~~l-g~~-~~~~~~~~~~~~~~~~~ 297 (446)
+++.+.. ..+.+ ....+..+++++..++++.... ++.....-.++..+ -.+ ....+.... -....+.
T Consensus 173 ~d~~~~v~~~l~~~~l-~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~-~~~~L~~ 250 (608)
T PF10345_consen 173 GDPAVFVLASLSEALL-HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKN-SKQKLKQ 250 (608)
T ss_pred CCHHHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHH
Confidence 5555432 22333 3345667788888887754322 11110111222222 221 111111000 0011122
Q ss_pred HHHHHHHHHHHH--H--------hhC-------CCC-H-----------H--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 298 QAKALQALVSAA--R--------STN-------MRD-L-----------S--ILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 298 ~~eAl~~~~~al--~--------~~~-------P~~-~-----------~--a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
+.+-+....... . .++ ++. + - +++--|......+..+.|.+++.++++.
T Consensus 251 lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~ 330 (608)
T PF10345_consen 251 LQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQ 330 (608)
T ss_pred HHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH
Confidence 222222222110 0 000 000 1 1 1223355566667777888888777663
Q ss_pred cCC-------C---C---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh---cCC----CCcHHHHHHH
Q 013299 347 EGG-------S---N---------------LKGWLLMARILSAQKRYEDAETILNAALDQ---TGK----WEQGELLRTK 394 (446)
Q Consensus 347 ~P~-------~---~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~----~~~~~~~~~~ 394 (446)
--+ . + .......+++....+++..|...++.+... .|. .-.+.+++..
T Consensus 331 i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~ 410 (608)
T PF10345_consen 331 IEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLL 410 (608)
T ss_pred HHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHH
Confidence 211 0 0 012335677888899999999988877754 230 0137788999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 395 AKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 395 a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
|......|+.+.|+..|.+..-.-
T Consensus 411 gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 411 GLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHHHHcCCHHHHHHHHhhhHHhh
Confidence 999999999999999998555333
No 323
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.84 E-value=9.3 Score=39.57 Aligned_cols=185 Identities=15% Similarity=0.008 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (446)
..|..-...-...|+++...-.|++++---..+.+.|...+.-....|+..-|-..+..+.+ -.-|+.+..++..+.++
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~-i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK-IHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh-hcCCCCcHHHHHHHHHH
Confidence 45555566667889999999999999999999999999999999999999999999999884 45677888888777775
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHH--HHHHHHHhhCCCCHHH
Q 013299 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ--ALVSAARSTNMRDLSI 319 (446)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~--~~~~al~~~~P~~~~a 319 (446)
+..|+++.|...+++..+.. |+. .-......+.-+ +.|..+.+-. .+.+.+ ...-.+...
T Consensus 377 -e~~~n~~~A~~~lq~i~~e~-pg~---v~~~l~~~~~e~------------r~~~~~~~~~~~~l~s~~-~~~~~~~~i 438 (577)
T KOG1258|consen 377 -ESNGNFDDAKVILQRIESEY-PGL---VEVVLRKINWER------------RKGNLEDANYKNELYSSI-YEGKENNGI 438 (577)
T ss_pred -HhhccHHHHHHHHHHHHhhC-Cch---hhhHHHHHhHHH------------HhcchhhhhHHHHHHHHh-cccccCcch
Confidence 44689999999999999876 331 112222223222 3344454441 222222 233333333
Q ss_pred H----HHHHH-HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 013299 320 L----YRLSL-EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 320 ~----~~lg~-~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g 366 (446)
+ ...+. .+.-.++.+.|...+.+++...|++ ...|..+-.+...++
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~-k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPDC-KVLYLELIRFELIQP 489 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc-HHHHHHHHHHHHhCC
Confidence 3 23333 2345789999999999999999999 588887777766665
No 324
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.68 E-value=11 Score=45.19 Aligned_cols=236 Identities=11% Similarity=0.047 Sum_probs=136.0
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
.+...|++..|..||+++++.+|+....+...-...+..|.+...+...+-.. ...++...-++..+--.-.+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~--~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI--INRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh--hccCHHHHHHHHHHHHHHhhhcchh
Confidence 44567899999999999999999988888887788888888888888888777 4555555544444333333444444
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhh-ch--H---------------HHHHHHHHH----------
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI-TD--F---------------DRATRQAKA---------- 301 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~-~~--~---------------~~~~~~~eA---------- 301 (446)
.-..+.. ..+.+... +. .+|.+.....+... .. . ...+-+..+
T Consensus 1536 ~~e~~l~------~~n~e~w~--~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1536 LLESYLS------DRNIEYWS--VE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL 1606 (2382)
T ss_pred hhhhhhh------cccccchh--HH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH
Confidence 4333321 00000000 00 01111111000000 00 0 000001111
Q ss_pred --HHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cCCC---CHHHHHHHHHHHHHccCH
Q 013299 302 --LQALVSAARSTNMRDL-----SILYRLSLEYAEQRKLNAAHYYAKMLLK-L--EGGS---NLKGWLLMARILSAQKRY 368 (446)
Q Consensus 302 --l~~~~~al~~~~P~~~-----~a~~~lg~~~~~~~~~~~A~~~~~~al~-l--~P~~---~~~~~~~la~~~~~~g~~ 368 (446)
+....+.+....|++- +-|-+....=....+..+-+-.+++++- + +|+. -.++|...|.+-...|++
T Consensus 1607 ~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1607 LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 1111112201112211 2222333222222335555556666532 2 4332 147999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 369 EDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 369 ~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+-|-.++-+|.+..+ +.++.-+|+.+..+|+-..|+..+++.++.+..
T Consensus 1687 q~A~nall~A~e~r~----~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRL----PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHhhhhccc----chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999999988887655 478888999999999999999999999988754
No 325
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.53 E-value=1 Score=50.32 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC--
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLMARILSAQKRYEDAETILNAALDQTGK-- 384 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-- 384 (446)
|+....+.+++......+....|+..+.++..+. |++| +....+++.++...++++.|+.+.+.|++.+-+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 5556667777777777778888888888776652 4443 234567888888888999999999988875421
Q ss_pred ----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhh
Q 013299 385 ----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFM 437 (446)
Q Consensus 385 ----~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 437 (446)
-.....+..++.+...+|++..|+...+....+.+.+....-.+.+.|.-+.+
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHH
Confidence 02456677788888888999999999998899888887777777777665544
No 326
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=93.22 E-value=4.4 Score=39.00 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=25.7
Q ss_pred HhhhhcccChHHHHHHHHHHHHHHHhhhc-CCCCCCCC
Q 013299 17 AKCLQGLGRFKEAAQSCKVILDIVESSFA-EGFPENLG 53 (446)
Q Consensus 17 g~~~~~~g~~eeA~~~~~~~l~~~~~~~~-~~~~~~~~ 53 (446)
|-..-..+.++-|++.+..+.-..-+.+| +|.|.+..
T Consensus 20 a~L~r~~rd~dlAEEa~~dA~~~Ale~WPr~G~P~~Pa 57 (415)
T COG4941 20 AALARYLRDLDLAEEALQDAFAAALERWPRAGPPRNPA 57 (415)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCcccCCCCChH
Confidence 34455677888888888887766666777 55666543
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.20 E-value=0.13 Score=29.59 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHH
Q 013299 196 ERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 196 ~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
.+++.||.++...|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345666666666666666666654
No 328
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=93.18 E-value=8.4 Score=37.13 Aligned_cols=123 Identities=14% Similarity=0.009 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e 370 (446)
+..++++..+.+++....|.-....-.++-++... -++..=..+|.-...+.|+ | .+-.|.+..+....-.+.
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-P-vV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-P-VVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-C-eEeehHHHHHHHhhhHHh
Confidence 45789999999998334477667777777777653 4677777778877788887 5 677778888877777888
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 371 AETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 371 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++..++......--.++...+-.+|.++.+.|+.++|.+.|++++++.++
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 88888877654110145667788999999999999999999999999753
No 329
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.98 E-value=5.7 Score=41.87 Aligned_cols=185 Identities=15% Similarity=0.014 Sum_probs=95.7
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh---------cCCCC
Q 013299 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG---------EYPDL 247 (446)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~---------~~~~~ 247 (446)
.++|++..+ +..+|..|-.|+..-...-.++-|+..|-++- . -|.-- ..-.++.+.. ...|+
T Consensus 679 ledA~qfiE-----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~--d-Y~Gik-~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQFIE-----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCG--D-YAGIK-LVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred hHHHHHHHh-----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhc--c-ccchh-HHHHhhhhhhHHHHhHhHhhhhcc
Confidence 455555544 33467888888888777777778887777655 1 12110 0000111111 11367
Q ss_pred HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 013299 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLS 324 (446)
Q Consensus 248 ~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg 324 (446)
++||...|-.+=+. + +....+.. .|++-.-.+.++..- -+-+| -.++.++|
T Consensus 750 feeaek~yld~drr---D---LAielr~k------------------lgDwfrV~qL~r~g~--~d~dD~~~e~A~r~ig 803 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR---D---LAIELRKK------------------LGDWFRVYQLIRNGG--SDDDDEGKEDAFRNIG 803 (1189)
T ss_pred hhHhhhhhhccchh---h---hhHHHHHh------------------hhhHHHHHHHHHccC--CCcchHHHHHHHHHHH
Confidence 77777776322110 0 00111111 233333333333211 12222 35777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013299 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (446)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 404 (446)
..++.+..+++|.++|.+.-.. .++..++.....|++-. .....-| ++...+-.+|..+...|.-
T Consensus 804 ~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE----~la~~Lp--e~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELE----VLARTLP--EDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHH----HHHHhcC--cccchHHHHHHHHHhhchH
Confidence 8888888888888888765221 12344455556666532 2223335 5556666666666666666
Q ss_pred HHHHHHH
Q 013299 405 KGAVETY 411 (446)
Q Consensus 405 ~eA~~~~ 411 (446)
++|+++|
T Consensus 869 ~qAV~a~ 875 (1189)
T KOG2041|consen 869 DQAVEAY 875 (1189)
T ss_pred HHHHHHH
Confidence 6666655
No 330
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=0.7 Score=43.15 Aligned_cols=73 Identities=15% Similarity=0.007 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
.++=..+.+.++++.|....++.+.++|+++ .-+.-.|.+|..+|.+.-|+..++..++.-| +.+.+-..++.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp-~eirDrGliY~ql~c~~vAl~dl~~~~~~~P--~~~~a~~ir~~ 257 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDP-YEIRDRGLIYAQLGCYHVALEDLSYFVEHCP--DDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCCh-hhccCcHHHHHhcCCchhhHHHHHHHHHhCC--CchHHHHHHHH
Confidence 3555667778889999999999999999885 7888889999999999999999998888888 66665554443
No 331
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.84 E-value=0.75 Score=35.84 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=27.0
Q ss_pred HcCCHHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 329 EQRKLNAAHYYAKMLLKLEGGSN--------LKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l~P~~~--------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
+.|++.+|++.+.+.+....... ..++.++|.++...|++++|+..+++|+++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666666655555554433221 123444555555555555555555555544
No 332
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.71 E-value=12 Score=37.58 Aligned_cols=241 Identities=10% Similarity=0.005 Sum_probs=143.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
+.++.-.|-.+++|+.-..-+...++-+.|+...++++.-.|. .+..++.++-..++-++-..+|+++++ .+..+.
T Consensus 292 ~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q-~L~r~y 367 (660)
T COG5107 292 NQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ-DLKRKY 367 (660)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH-HHHHHH
Confidence 4555666788888888888888888888888888888776665 667778877777776666677777762 110000
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh-hchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL-GISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l-g~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
. ..-+...-...|+++-.-+++-+-+.. ...+|+.+ -.+. |..-.+.|...|-++-
T Consensus 368 s---~~~s~~~s~~D~N~e~~~Ell~kr~~k--------~t~v~C~~~N~v~------------r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 368 S---MGESESASKVDNNFEYSKELLLKRINK--------LTFVFCVHLNYVL------------RKRGLEAARKLFIKLR 424 (660)
T ss_pred h---hhhhhhhccccCCccccHHHHHHHHhh--------hhhHHHHHHHHHH------------HHhhHHHHHHHHHHHh
Confidence 0 000000011112221111111100000 01222211 1111 2223566777787776
Q ss_pred HhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 310 RSTNMRDLSILYRLSLE-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
+..=-..+++..-|.+ +.-+|++..|-..|+-.+.-.|+++ ......-..+...++-+.|.+.|++++..-.+..-.
T Consensus 425 -k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~-~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k 502 (660)
T COG5107 425 -KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDST-LYKEKYLLFLIRINDEENARALFETSVERLEKTQLK 502 (660)
T ss_pred -ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCch-HHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhh
Confidence 4442344444443433 4457899999999999999999974 555556667778899999999999888654311124
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.+|-.+-.....-|+...+...=++..++.|+
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 55666666677788888888777777777664
No 333
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.69 E-value=0.17 Score=47.77 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=69.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHH-HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHI-LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
+-|.|+..|.....-..+.|-+.+--..|-++++.+|.+++.|.. -+.-+...++++.+...|.++| +.||++|..|
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl--R~N~~~p~iw 179 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL--RMNSRSPRIW 179 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh--ccCCCCchHH
Confidence 458999999988877778888889999999999999999999977 5566778899999999999999 9999999877
Q ss_pred H
Q 013299 235 L 235 (446)
Q Consensus 235 ~ 235 (446)
.
T Consensus 180 ~ 180 (435)
T COG5191 180 I 180 (435)
T ss_pred H
Confidence 5
No 334
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.65 E-value=0.18 Score=47.65 Aligned_cols=85 Identities=11% Similarity=0.072 Sum_probs=66.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
.|.++. -.-|+|+..|...+.-....|.+.+--..|.++++..|.+ ++.|.. -+.=+...++++.+.+.+.++++.+
T Consensus 95 ~~~R~t-nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRST-NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred eeehhh-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 445555 5778888888777666666778888888899999999988 588876 4556677888888999999999998
Q ss_pred CCCCcHHHHH
Q 013299 383 GKWEQGELLR 392 (446)
Q Consensus 383 p~~~~~~~~~ 392 (446)
| +++.+|+
T Consensus 173 ~--~~p~iw~ 180 (435)
T COG5191 173 S--RSPRIWI 180 (435)
T ss_pred C--CCchHHH
Confidence 8 7777775
No 335
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.58 E-value=0.19 Score=31.55 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHH--HHhcCCCCCCC
Q 013299 195 KERYHILALCYYGAGEDLVALNLLR--TLLSGSEDPKC 230 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~--~al~~~~~P~~ 230 (446)
++.|+.+|-.+...|++++|+..|+ -+. .++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~--~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLC--ALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--HHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HhcccC
Confidence 3567888888888899999988844 555 456543
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.54 E-value=1.1 Score=45.00 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=83.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 152 VALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
.++...|.+|......+.+....|.|+.+.+.+.-+-.+-..-..+..-+-..+..+||+++|...-+-.+ .-.-+++
T Consensus 314 ~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l--~~eie~~ 391 (831)
T PRK15180 314 AALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML--SNEIEDE 391 (831)
T ss_pred HHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh--ccccCCh
Confidence 56788899999999999999999999999988765544433334444445566778999999999999988 5555566
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDG 265 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~ 265 (446)
++....++. -..++-++++..+.++++.+.+|.
T Consensus 392 ei~~iaa~s-a~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 392 EVLTVAAGS-ADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hheeeeccc-HHHHhHHHHHHHHHHHHhccCChh
Confidence 654433332 345788999999999999965553
No 337
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.54 E-value=15 Score=38.18 Aligned_cols=252 Identities=11% Similarity=-0.044 Sum_probs=151.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-CCChHHHHHHHHHHhcCCCCC
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG-AGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~~~P 228 (446)
+...+...|-.-..|-..+..-.+.|..+.++..|++++..-|-+.+.|..+-..... .|+.+.=...|++|+ ...-
T Consensus 68 y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~--~~vG 145 (577)
T KOG1258|consen 68 YDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK--SYVG 145 (577)
T ss_pred HHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH--Hhcc
Confidence 4667888899888999999999999999999999999999999999999887555444 466666667888888 4443
Q ss_pred CChH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-----------------------------------
Q 013299 229 KCLP---ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME----------------------------------- 270 (446)
Q Consensus 229 ~~~~---a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~----------------------------------- 270 (446)
.+.. .|-.....- ...+....-...|+|.++ .|...-...
T Consensus 146 ~dF~S~~lWdkyie~e-n~qks~k~v~~iyeRile-iP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~ 223 (577)
T KOG1258|consen 146 LDFLSDPLWDKYIEFE-NGQKSWKRVANIYERILE-IPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKI 223 (577)
T ss_pred cchhccHHHHHHHHHH-hccccHHHHHHHHHHHHh-hhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhc
Confidence 3321 111111111 123344444455555554 221100000
Q ss_pred ------------------------hHHHHHhhchhH-------hhhhh--hhc---------------------------
Q 013299 271 ------------------------STANCLLGISLS-------AQSKV--AIT--------------------------- 290 (446)
Q Consensus 271 ------------------------~~a~~~lg~~~~-------~~~~~--~~~--------------------------- 290 (446)
......++.... ..... ...
T Consensus 224 ~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~y 303 (577)
T KOG1258|consen 224 THSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYY 303 (577)
T ss_pred ccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHH
Confidence 000000000000 00000 000
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHccC
Q 013299 291 --DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 291 --~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~~~~~~la~~~~~~g~ 367 (446)
...+.|.+....-.|++++ .--....+.|.+.+.-....|+.+-|-..+.++.++. |+.+ ..+..-+.+-...|+
T Consensus 304 Ldf~i~~g~~~~~~~l~ercl-i~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~-~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCL-IPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP-IIHLLEARFEESNGN 381 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHH-hHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc-HHHHHHHHHHHhhcc
Confidence 0123456666666777777 6666666777777766666777777777777776654 3433 555566666666777
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 013299 368 YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409 (446)
Q Consensus 368 ~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~ 409 (446)
++.|...+++..+..| +...+-.........+|..+.+..
T Consensus 382 ~~~A~~~lq~i~~e~p--g~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 382 FDDAKVILQRIESEYP--GLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHHHHHHhhCC--chhhhHHHHHhHHHHhcchhhhhH
Confidence 7777777777776667 666666667777777777777764
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.21 E-value=0.19 Score=28.91 Aligned_cols=22 Identities=14% Similarity=0.002 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYA 340 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~ 340 (446)
+++.+|.++..+|++++|+..+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 339
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.20 E-value=12 Score=36.16 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=38.4
Q ss_pred HHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 200 ILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 200 ~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
..-..-++..+..+-++.-..++ ++||+...++..++. +..--..+|...++++++.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~AL--eIN~eCA~AyvLLAE---EEa~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQAL--EINNECATAYVLLAE---EEATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH--hcCchhhhHHHhhhh---hhhhhHHHHHHHHHHHHHH
Confidence 33344456666677778888888 888888888876542 2233456778888888774
No 340
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.00 E-value=13 Score=37.46 Aligned_cols=209 Identities=14% Similarity=0.016 Sum_probs=128.6
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 182 TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 182 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
=.|++++.--|-.++.|+-...-+...++-+.|+...++++ ...|. ..+.+ ..|+.-.++.++--.+|++.++.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~--~~sps---L~~~l-se~yel~nd~e~v~~~fdk~~q~ 362 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI--EMSPS---LTMFL-SEYYELVNDEEAVYGCFDKCTQD 362 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc--cCCCc---hheeH-HHHHhhcccHHHHhhhHHHHHHH
Confidence 35788888889999999999999999999999999999999 67775 33333 34566555555555667766653
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
+.. - +..|..-...+ ..|.++..-+.+-+-. + .-.-+|.-+-..-.+..-++.|...|-
T Consensus 363 L~r--------~-ys~~~s~~~s~--------~D~N~e~~~Ell~kr~---~-k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 363 LKR--------K-YSMGESESASK--------VDNNFEYSKELLLKRI---N-KLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHH--------H-Hhhhhhhhhcc--------ccCCccccHHHHHHHH---h-hhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 211 0 00111000000 0111211112221111 1 222333322222334455788888998
Q ss_pred HHHhhcCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 342 MLLKLEGGSNLKGWLLMARI-LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++-+..=... .++..-|.+ +..+|++.-|-.+++-.+...| |.+..-+-.-..+...|+-..|...|+++++...+
T Consensus 422 k~rk~~~~~h-~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~--d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~ 498 (660)
T COG5107 422 KLRKEGIVGH-HVYIYCAFIEYYATGDRATAYNIFELGLLKFP--DSTLYKEKYLLFLIRINDEENARALFETSVERLEK 498 (660)
T ss_pred HHhccCCCCc-ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH
Confidence 8866541221 444444444 5678999999999999999999 66655555556778899999999999977765544
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.96 E-value=1 Score=40.17 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHccCHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~~la~~~~~~g~~~eA~ 372 (446)
++|...|-++-+.-.=++++..+.||..|. ..+.++|+..+.+++++.+.+ ..+.+..|+.++..+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 466666665542223467888888887666 778888999999998886543 1377788888888888888774
No 342
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.90 E-value=0.37 Score=30.65 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++..+|.+-...++|++|++.|+++|++..+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 356677888888888888888888888876543
No 343
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.50 E-value=0.85 Score=43.07 Aligned_cols=62 Identities=13% Similarity=-0.052 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013299 301 ALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (446)
Q Consensus 301 Al~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~ 364 (446)
|..+|.+|+ .+.|++...++.||.+....|+.=+|+-+|-|++...--.+ .+..++..++.+
T Consensus 1 A~~~Y~~A~-~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~-~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAI-RLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFP-SARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHH-HH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--H-HHHHHHHHHHHH
T ss_pred CHHHHHHHH-HhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHH
Confidence 566777777 77777777777777777777777777777777765544443 666666666555
No 344
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.47 E-value=1.1 Score=34.91 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=49.3
Q ss_pred HHccCHHHHHHHHHHHHhhcCCCC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 363 SAQKRYEDAETILNAALDQTGKWE-------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
...|+|.+|++.+.+..+...... ...+..++|.+....|++++|+..+++++++.++..+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~ 78 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR 78 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH
Confidence 467999999988888876543111 135677899999999999999999999999998765543
No 345
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.32 E-value=2.1 Score=47.45 Aligned_cols=129 Identities=14% Similarity=0.050 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQ----R---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~----~---~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
..+.|+.|+..|+++. .--|.- .++.+.+|..+.++ | .+++|+..|++.- -.|.-| --|...|.+|.
T Consensus 487 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 563 (932)
T PRK13184 487 AEKLYDQALIFYRRIR-ESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAP-LEYLGKALVYQ 563 (932)
T ss_pred hhHHHHHHHHHHHHHh-hcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCc-hHHHhHHHHHH
Confidence 3578999999999999 888875 46889999888754 3 5778888887753 356655 67888999999
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHhhhhhhccC
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-----GQLKGAVETYTHLLAALQVQTKTFSS 427 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-----g~~~eA~~~~~~~l~l~~~~~~~~~~ 427 (446)
.+|+|+|-++++.-|++..| .++.+-..+-.+-.++ .+-..|....--++.+.|+.......
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (932)
T PRK13184 564 RLGEYNEEIKSLLLALKRYS--QHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREE 630 (932)
T ss_pred HhhhHHHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHH
Confidence 99999999999999999999 7765544333322222 22345555555566666665444433
No 346
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=3.4 Score=43.04 Aligned_cols=99 Identities=11% Similarity=0.035 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
++.+-|.-+.+..+|..+++.|...+.--|.+. +....+++.+|..+.+.|.|.++++.|-+.+| .++...+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~--~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR--QSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc--ccHHHHHH
Confidence 345666677778888888888888877666541 24566778888888888888888888888888 77777777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.-.+....|.-++|+.+..+......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 77777777888888888777766543
No 347
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.84 E-value=28 Score=37.98 Aligned_cols=243 Identities=14% Similarity=0.029 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC--c-------HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIIN--R-------KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
.|..-...+..+....++.+|..+..++-..-|. . .+..--.|.+....|+.++|+...+.++ ..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al--~~L~~~ 491 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL--VQLPEA 491 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--Hhcccc
Confidence 4445556677777788888888777666544333 1 1222235778888999999999999999 555554
Q ss_pred hH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 231 LP-----ALLIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 231 ~~-----a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
.. +....+.+ ..-.|++++|..+...+.+.....+. .+...+......++..+|.. .+++....
T Consensus 492 ~~~~r~~~~sv~~~a-~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~---------~~a~~~~~ 561 (894)
T COG2909 492 AYRSRIVALSVLGEA-AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQV---------ARAEQEKA 561 (894)
T ss_pred cchhhhhhhhhhhHH-HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHH---------HHHHHHHH
Confidence 32 22222222 23368899999998888775322211 11122222334444444411 23333333
Q ss_pred HHHHH---HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 305 LVSAA---RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS------NLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 305 ~~~al---~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~------~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|...- -...|-+.....-.+.++...-+++.+.....+.+++.-.. ...+.+.|+.+....|++++|...+
T Consensus 562 ~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 562 FNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33322 03344444444444444444444888888888877764321 1112347899999999999999998
Q ss_pred HHHHhhcCCCC---cHHH--HHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 376 NAALDQTGKWE---QGEL--LRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 376 ~~al~~~p~~~---~~~~--~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
+....+--.++ +..+ +......-..+|+..+|.....+.
T Consensus 642 ~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 642 DELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 88776532111 1111 222333446778888887776653
No 348
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.80 E-value=5.1 Score=44.55 Aligned_cols=130 Identities=16% Similarity=0.056 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg 324 (446)
.+.++.|+..|+|.....|...+. ..|.+.+|+.+..++.+... ...+++|+..|++.. --|.-|--+...|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 559 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEG--YEAQFRLGITLLEKASEQGD----PRDFTQALSEFSYLH--GGVGAPLEYLGKA 559 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccc--hHHHHHhhHHHHHHHHhcCC----hHHHHHHHHHHHHhc--CCCCCchHHHhHH
Confidence 357899999999999977765443 46889999998887764322 136899999999766 4677787888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhcC
Q 013299 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-----KRYEDAETILNAALDQTG 383 (446)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~~p 383 (446)
.+|.++|+++|=+++|.-|++--|++| ..-...-.+-.++ .+-..|+...--++..-|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHP-EISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP 622 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999997 5433332222222 334566666667777777
No 349
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.77 E-value=0.79 Score=43.26 Aligned_cols=62 Identities=16% Similarity=-0.002 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 336 AHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 336 A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
|+.+|.+|+.+.|++. ..|+.+|.+....|+.=+|+-+|-+++-..- ..+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G-~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~--Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG-NPYNQLAVLASYQGDDLDAVYYYIRSLAVRI--PFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS-HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC-CcccchhhhhccccchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH
Confidence 7899999999999995 9999999999999999999999999996543 367888888888877
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.76 E-value=14 Score=34.53 Aligned_cols=208 Identities=14% Similarity=0.192 Sum_probs=119.3
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKE----RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
..++++|+..|++++++.|...+ +.-++..+.+++|+|++-...|.+.+ .+. .+.+. .+..+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL----------TYI-kSAVT---rNySE 105 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL----------TYI-KSAVT---RNYSE 105 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH----------HHH-HHHHh---ccccH
Confidence 34889999999999999887765 45556778888888988888888888 122 11121 12222
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH----HHHH
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY----RLSL 325 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~----~lg~ 325 (446)
..+...--.+.. + -+.+.. +.-|+..+..++.| .|-..|+ .||.
T Consensus 106 KsIN~IlDyiSt---------S---~~m~LL--------------Q~FYeTTL~ALkdA------KNeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 106 KSINSILDYIST---------S---KNMDLL--------------QEFYETTLDALKDA------KNERLWFKTNTKLGK 153 (440)
T ss_pred HHHHHHHHHHhh---------h---hhhHHH--------------HHHHHHHHHHHHhh------hcceeeeeccchHhh
Confidence 222222111110 0 001100 11233333333332 3334443 7888
Q ss_pred HHHHcCCHHHHHHHHHHH---HhhcCC-CC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH-
Q 013299 326 EYAEQRKLNAAHYYAKML---LKLEGG-SN-------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT- 393 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~a---l~l~P~-~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~- 393 (446)
++...+.+..-.+.+++. ..-+.. ++ .+.+..--.+|..+++-+.--..|++++....--.++.+.-.
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvI 233 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVI 233 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHH
Confidence 888887776655555443 332211 10 234444456788888888888889999976421014444332
Q ss_pred ---HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcch
Q 013299 394 ---KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF 431 (446)
Q Consensus 394 ---~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~ 431 (446)
-|...++.|++++|-..|=.+++ +++..|.+.+-
T Consensus 234 RECGGKMHlreg~fe~AhTDFFEAFK----NYDEsGspRRt 270 (440)
T KOG1464|consen 234 RECGGKMHLREGEFEKAHTDFFEAFK----NYDESGSPRRT 270 (440)
T ss_pred HHcCCccccccchHHHHHhHHHHHHh----cccccCCcchh
Confidence 25667888999999888876664 55666665553
No 351
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.35 E-value=1.3 Score=41.39 Aligned_cols=69 Identities=22% Similarity=0.036 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
++-.++.+.++++.|..+-++.+.++|.++.-+.-.|.+|.+.|.+.-|+..++..+ ..-|+++.+-..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~--~~~P~~~~a~~i 254 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV--EHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH--HhCCCchHHHHH
Confidence 455677788899999999999999999999999999999999999999999999988 778888776543
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.14 E-value=22 Score=36.26 Aligned_cols=128 Identities=14% Similarity=0.032 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhh
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (446)
.|+++++....+..- +-|.-|.-+.....-++++.|..+.|+... . + +...+.|+.-
T Consensus 274 ~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~-------~-D-----~~~rFeLAl~------- 330 (443)
T PF04053_consen 274 RGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFV-------T-D-----PDHRFELALQ------- 330 (443)
T ss_dssp TT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHS-------S-------HHHHHHHHHH-------
T ss_pred cCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhc-------C-C-----hHHHhHHHHh-------
Confidence 567777766665221 234333333333333455566665554432 2 1 2233444332
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC
Q 013299 288 AITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 288 ~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~ 367 (446)
.|+++.|.+.. ...+++..|-.||.....+|+++-|+.+|+++ .-+..|..++...|+
T Consensus 331 -------lg~L~~A~~~a------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~---------~d~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 331 -------LGNLDIALEIA------KELDDPEKWKQLGDEALRQGNIELAEECYQKA---------KDFSGLLLLYSSTGD 388 (443)
T ss_dssp -------CT-HHHHHHHC------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC---------T-HHHHHHHHHHCT-
T ss_pred -------cCCHHHHHHHH------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh---------cCccccHHHHHHhCC
Confidence 24556655442 33458889999999999999999999999886 123346677778888
Q ss_pred HHHHHHHHHHHHh
Q 013299 368 YEDAETILNAALD 380 (446)
Q Consensus 368 ~~eA~~~~~~al~ 380 (446)
-+.=....+.|..
T Consensus 389 ~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 389 REKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7554444444443
No 353
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.84 E-value=1.4 Score=41.64 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
++..++..+...|+++.+++.+++.+..+|-+...|..+-..|+..|+...|+..|++.-
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555443
No 354
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.61 E-value=2.6 Score=39.92 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
...++..++..+...|+++.++..+++.+.++|-+. ..|..+-.++...|+...|+..|++.-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E-~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDE-PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 356677777777777888888888888888888773 7777777788888888888887776654
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.37 E-value=4.5 Score=30.27 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=35.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhcCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 358 MARILSAQKRYEDAETILNAALDQTGKWEQG---ELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 358 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
-|.=++.+.+.++|+..++++++..+ +.. .++-.+..++...|++.+.++.--+-+++..
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~--~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKIT--DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777777777776655 332 3333445566777777777766666666543
No 356
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.35 E-value=33 Score=36.52 Aligned_cols=184 Identities=14% Similarity=0.014 Sum_probs=103.7
Q ss_pred HHHHhhhhcccChHHHHHHHHHH------HHHHHh---------hhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCC
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVI------LDIVES---------SFAEGFPENLGADCKLQETLNRAVELLPELWKLADA 78 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~------l~~~~~---------~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~ 78 (446)
..+|..----|+||||++.|-.+ |+..-+ ...+|..+. -.+..+.|+...|..+...-.
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~------dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDD------DDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCc------chHHHHHHHHHHHHHHHHHHH
Confidence 34555555668999999988663 222111 112332221 123356788888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCC
Q 013299 79 PRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIE 158 (446)
Q Consensus 79 ~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p 158 (446)
+++|.++|...-.. + +..+.+.+ .+.+++- +......|
T Consensus 812 We~A~~yY~~~~~~------e-------~~~ecly~--------------------le~f~~L---------E~la~~Lp 849 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDT------E-------NQIECLYR--------------------LELFGEL---------EVLARTLP 849 (1189)
T ss_pred HHHHHHHHHhccch------H-------hHHHHHHH--------------------HHhhhhH---------HHHHHhcC
Confidence 88888888876443 1 11122111 1112221 22234459
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
++...+--+|..+...|.-++|+++|-+--. |..+ -.....++++.+|.+.-++-- -|.-- .++..-
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--pkaA------v~tCv~LnQW~~avelaq~~~----l~qv~-tliak~ 916 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRRSL--PKAA------VHTCVELNQWGEAVELAQRFQ----LPQVQ-TLIAKQ 916 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhccC--cHHH------HHHHHHHHHHHHHHHHHHhcc----chhHH-HHHHHH
Confidence 9999999999999999999999988854321 2111 112335566777777665522 23211 111111
Q ss_pred HHHhcCCCCHHHHHHHHHHH
Q 013299 239 KICGEYPDLAEEGATFASRA 258 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~a 258 (446)
...+...++.-+|++.++++
T Consensus 917 aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 917 AAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhhcchHHHHHHhhhc
Confidence 11223356777888877776
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.19 E-value=6.1 Score=35.35 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchH
Q 013299 213 VALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF 292 (446)
Q Consensus 213 eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~ 292 (446)
+.+..+.+-+ .+.++|...++. ..+.|+ ++|...|-++-. .+ ....+...+.|+..|.+.
T Consensus 95 ~~l~~L~~~t---k~S~dP~llYy~----Wsr~~d-~~A~~~fL~~E~-~~---~l~t~elq~aLAtyY~kr-------- 154 (203)
T PF11207_consen 95 QELERLQEET---KNSQDPYLLYYH----WSRFGD-QEALRRFLQLEG-TP---ELETAELQYALATYYTKR-------- 154 (203)
T ss_pred HHHHHHHHHH---ccCCCccHHHHH----hhccCc-HHHHHHHHHHcC-CC---CCCCHHHHHHHHHHHHcc--------
Confidence 4444555555 344555554432 122233 455555443322 11 222367778888887653
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 013299 293 DRATRQAKALQALVSAARSTNMR----DLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~----~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
+.++|+..+-+++ ++.+. |++++..|+.++..+|+++.|=
T Consensus 155 ----D~~Kt~~ll~~~L-~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 155 ----DPEKTIQLLLRAL-ELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ----CHHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5689999999999 87644 5999999999999999999873
No 358
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.73 E-value=8.2 Score=40.32 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 013299 293 DRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g 366 (446)
.+..+|..+++.|...+ .--|+|- ...-+++.+|....++|.|.++++.|-+.+|.++ -.....-.+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl-~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~-l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSL-KDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP-LCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHH-HhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHHhc
Confidence 45678999999999999 8888764 3456889999999999999999999999999985 77777777778889
Q ss_pred CHHHHHHHHHHHHhh
Q 013299 367 RYEDAETILNAALDQ 381 (446)
Q Consensus 367 ~~~eA~~~~~~al~~ 381 (446)
.-++|+.+..+....
T Consensus 443 ~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSS 457 (872)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999998877654
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.69 E-value=2.4 Score=31.72 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHH---HHHHHccCHHHHHHHHHHHHhh
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMA---RILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la---~~~~~~g~~~eA~~~~~~al~~ 381 (446)
.-|.-++.+++.++|+...++++...++.+ ..|..+| .++...|+|.+.+++--+=+++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556678888999999999999888864 6666655 4577788888888876554443
No 360
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.59 E-value=3.8 Score=36.12 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 013299 296 TRQAKALQALVSAA 309 (446)
Q Consensus 296 ~~~~eAl~~~~~al 309 (446)
++|.+|...|-.++
T Consensus 127 r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 127 RDFKEAAELFLDSL 140 (177)
T ss_pred chHHHHHHHHHccC
Confidence 45677777776555
No 361
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.45 E-value=22 Score=33.37 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhC
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIEWDPS----ILDHLSFAFSIAGDLSSLATQIEELL 188 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p~~~~----~~~~lg~~l~~~~~~~~A~~~~~~al 188 (446)
...+.++|+..+ +.+++..|+-.+ ++-..-.+..+.+++++-.+.|.+.+
T Consensus 39 ~e~~p~~Al~sF-----~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSF-----QKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHH-----HHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 455788888765 556776665433 44455567778888888888777665
No 362
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.41 E-value=0.82 Score=29.05 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
++..||.+-...++|++|+.-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444445555555555544444
No 363
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.23 E-value=9.7 Score=39.88 Aligned_cols=84 Identities=12% Similarity=-0.115 Sum_probs=41.7
Q ss_pred cccCCCcHHHHHHHHHH-----HHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 013299 131 SFVPRNNIEEAILLLMI-----LLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY 205 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~-----~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 205 (446)
.++..|+.++|+..... .+.+..-+.+-.+.+.+..++.-+.+...+.-|.+.|.+.-+. -.+-.++
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlH 783 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLH 783 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhhe
Confidence 34455666666653210 0112222223334445555555555556666666666554332 1234455
Q ss_pred HHCCChHHHHHHHHHHh
Q 013299 206 YGAGEDLVALNLLRTLL 222 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al 222 (446)
...+++++|...-++-=
T Consensus 784 ve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKHP 800 (1081)
T ss_pred eecccchHhHhhhhhCc
Confidence 56677777766655543
No 364
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.44 E-value=5.8 Score=42.12 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=114.5
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP--------ALLIASKICGEYPDLAEEGATFASRALECLGDG 265 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~--------a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~ 265 (446)
.++...++-..|....+|+.-+...+..- .-|+... .++..+----...|+.+.|+...-.+++...+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk---~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK---RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH---hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 46778888889999999998888776644 3453221 122211111235677888888888888865443
Q ss_pred cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 013299 266 CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLL 344 (446)
Q Consensus 266 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al 344 (446)
.+..+...|.+|..+ +..+.++-.+..+.|+++|++|- +..|.-..-. |++.++...| .++..+++=.-.+
T Consensus 277 ----apDm~Cl~GRIYKDm--F~~S~ytDa~s~~~a~~WyrkaF-eveP~~~sGI-N~atLL~aaG~~Fens~Elq~Igm 348 (1226)
T KOG4279|consen 277 ----APDMYCLCGRIYKDM--FIASNYTDAESLNHAIEWYRKAF-EVEPLEYSGI-NLATLLRAAGEHFENSLELQQIGM 348 (1226)
T ss_pred ----CCceeeeechhhhhh--hhccCCcchhhHHHHHHHHHHHh-ccCchhhccc-cHHHHHHHhhhhccchHHHHHHHH
Confidence 356788889988654 33444555677899999999999 9999854333 4555555444 5666665555555
Q ss_pred hhcC-----CC--CHHHHHHHHHHHH---HccCHHHHHHHHHHHHhhcC
Q 013299 345 KLEG-----GS--NLKGWLLMARILS---AQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 345 ~l~P-----~~--~~~~~~~la~~~~---~~g~~~eA~~~~~~al~~~p 383 (446)
.++. .. ....|+..|..+. ..++|..|+..-+...++.|
T Consensus 349 kLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 349 KLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred HHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 5542 11 0122333333322 34789999999999999988
No 365
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.89 E-value=55 Score=35.24 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
+.+.|...+.+.. ...+-+.+ ++..+|.-....+..++|...+..+.....+. ..+.-...+-...++++.+.
T Consensus 256 d~~~A~~~~~~~~-~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~--~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 256 DAENARLMIPSLV-RAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST--SLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred CHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc--HHHHHHHHHHHHccCHHHHH
Confidence 4577888887765 45543332 33455555554433677888887765433332 33333334444788998887
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 373 TILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 373 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
.++...-.... .....+|=+|..+...|+.++|...|+++..
T Consensus 333 ~~i~~L~~~~~--~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEAK--EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhhc--cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77776433222 4567777788998889999999999999744
No 366
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.19 E-value=21 Score=33.05 Aligned_cols=175 Identities=15% Similarity=0.108 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH-HHHHHHHHHHH-CCChHHHHHHHHHHhcCCCCCC--ChHHHHHHHH
Q 013299 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKE-RYHILALCYYG-AGEDLVALNLLRTLLSGSEDPK--CLPALLIASK 239 (446)
Q Consensus 164 ~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~-~g~~~eA~~~~~~al~~~~~P~--~~~a~~~~~~ 239 (446)
+..++.+..+.|++++.+.+.++++..+|+-.. -..-|..+|-. .|....+...+.... ..... +....- ...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e--~~~~~~~~~~~~~-~i~ 80 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE--QKEENKGNEKQVK-LIK 80 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTTTHHHHH-HHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh--hhhcccchhHHHH-HHH
Confidence 345777888889999999999998888665433 33334444432 355555555554443 11111 111110 110
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCC----CcchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh--
Q 013299 240 ICGEYPDLAEEGATFASRALECLGD----GCDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAARS-- 311 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~----~~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~-- 311 (446)
-+.. .-.++=...+..++..+.. ......+.+++ ..|..|....... ....+..-.++|..+|++|+ +
T Consensus 81 ~yk~--kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~~~a~~aY~~A~-~~a 156 (236)
T PF00244_consen 81 DYKK--KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFD-SGDEKKEAAEKALEAYEEAL-EIA 156 (236)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccc-cchhhHHHHHHHHHhhhhHH-HHH
Confidence 0000 0112223334444443211 10011122222 2355554443322 11123334466777777666 4
Q ss_pred ---hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013299 312 ---TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK 345 (446)
Q Consensus 312 ---~~P~~~~a~---~~lg~~~~~-~~~~~~A~~~~~~al~ 345 (446)
+.|.||--+ .|.+..|+. .|+.++|+...++|+.
T Consensus 157 ~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 157 KKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred hcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456666422 344444443 6777777777666654
No 367
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.03 E-value=51 Score=34.86 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=42.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+++-.+.+.+..++.-+.....+.-|-+.|++.=.+ . .+..++...++++||...-++--+.-| +.
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------k---siVqlHve~~~W~eAFalAe~hPe~~~-----dV 806 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------K---SLVQLHVETQRWDEAFALAEKHPEFKD-----DV 806 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------H---HHhhheeecccchHhHhhhhhCccccc-----cc
Confidence 455555555555555555555555555555443110 0 123344455666666665554444333 23
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
|+-.|.-+.+..+|+||-+.|.+
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHH
Confidence 44444444455555555555543
No 368
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.30 E-value=4.7 Score=45.40 Aligned_cols=119 Identities=14% Similarity=-0.037 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHHccCHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-------GGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-------P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.+++..+....+.++|..+..+..|+.++.+.+++++|+....+|+-+. +.+....+.+++...+..+....|
T Consensus 955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~a 1034 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGA 1034 (1236)
T ss_pred hhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccch
Confidence 3455588766657899999999999999999999999999988886653 222246788899888999999999
Q ss_pred HHHHHHHHhh--------cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 372 ETILNAALDQ--------TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 372 ~~~~~~al~~--------~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+..+.++..+ .| .-.....+++.++...++++.|+...+.+++...
T Consensus 1035 l~~~~ra~~l~~Ls~ge~hP--~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1035 LKSLNRALKLKLLSSGEDHP--PTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred hhhHHHHHHhhccccCCCCC--chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 9999988865 24 3445567888999999999999999999999553
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.71 E-value=4.3 Score=38.33 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=30.5
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013299 168 SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 168 g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
+..+...|.+.+|++..+++++++|=+...|..|-.+|...|+--+|...|++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 44455555666666666666666666655555555555555655555555544
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.38 E-value=4.3 Score=38.31 Aligned_cols=57 Identities=18% Similarity=-0.007 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
...+..|...|.+.+|+++.+++++++|-+ .+.|..+-.++...|+--+|...|++-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 455667788899999999999999999988 488999999999999877777776654
No 371
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=83.19 E-value=25 Score=29.15 Aligned_cols=47 Identities=15% Similarity=-0.022 Sum_probs=32.7
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 219 (446)
...+.+...+..++.++..++.++..+..+..+|...+ ..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34567788888888888887777888888888877543 344445544
No 372
>PF13041 PPR_2: PPR repeat family
Probab=83.07 E-value=4.5 Score=27.00 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
+...|..+-..+.+.|++++|.+.|++..+....|+...
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~T 40 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYT 40 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 455777888888889999999999988885456776543
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.37 E-value=1.7 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=16.8
Q ss_pred CHHHHHHHHHhhCCCCCCcHHHHHHHHH
Q 013299 176 DLSSLATQIEELLPGIINRKERYHILAL 203 (446)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~lg~ 203 (446)
+.+.+...|++++...|.+++.|..++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555666666666666666666655543
No 374
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.37 E-value=67 Score=33.49 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=28.4
Q ss_pred CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 189 PGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 189 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.-+|-+.+...+++.+...+|+.+-|-..++++|
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3468888899999999999999988888877776
No 375
>PRK12798 chemotaxis protein; Reviewed
Probab=82.16 E-value=58 Score=32.61 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARILSAQKRYEDAETILN 376 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~ 376 (446)
+|..++..-...|+.+-|.-.-.+|+.+.+... ..+....+....-..++++|+..+.
T Consensus 259 lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 259 LYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 444455555556666666666666666543211 1223333333333444555554444
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.87 E-value=16 Score=32.49 Aligned_cols=47 Identities=9% Similarity=-0.045 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 370 DAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+++.++.+...| ++..+.+++.++...|+.++|....+++..+.|
T Consensus 129 ~~~~~a~~~l~~~P---~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP---DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444555555555 445555555556666666666555555555555
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.46 E-value=2.8 Score=27.61 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=22.2
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
+.||.+|+.+|+++.|...+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 678999999999999999999999
No 378
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.01 E-value=9.6 Score=38.14 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhC--------CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 166 HLSFAFSIAGDLSSLATQIEELL--------PGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.|.++++..|+|..|+..++-.= ...+-+...+|..|.+|+-++||.+|+..|...|
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888999999998876431 1224456789999999999999999999999998
No 379
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=79.81 E-value=43 Score=29.64 Aligned_cols=77 Identities=6% Similarity=-0.052 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-----CCChHHHHHHHHHHhcCCCCCCChH
Q 013299 159 WDPSILDHLSFAFSI-AGDLSSLATQIEELLPGIINRKERYHILALCYYG-----AGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
..|+..++||.-+.. +.+|++|...|..--.- ..++...|.+|.-+.. .++...|++.|+.+- +-+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC----~~n~~~ 106 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC----DANIPQ 106 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh----ccCCHH
Confidence 467788888887764 46788888888876664 4577888888875553 346778888888877 455666
Q ss_pred HHHHHHHH
Q 013299 233 ALLIASKI 240 (446)
Q Consensus 233 a~~~~~~~ 240 (446)
+...++.+
T Consensus 107 aC~~~gLl 114 (248)
T KOG4014|consen 107 ACRYLGLL 114 (248)
T ss_pred HHhhhhhh
Confidence 66655544
No 380
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=79.62 E-value=99 Score=33.69 Aligned_cols=108 Identities=15% Similarity=0.008 Sum_probs=78.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHhcCCCCC
Q 013299 152 VALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG---AGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~~~P 228 (446)
.-+..++.+...+..|-.++...|++++-...=+++..+.|-.+..|.....-... .+...++...|++++ .+-
T Consensus 104 ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal---~dy 180 (881)
T KOG0128|consen 104 EELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL---GDY 180 (881)
T ss_pred HHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh---ccc
Confidence 34567778888888888899999999988888888888889999999887655443 377788999999999 566
Q ss_pred CChHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHc
Q 013299 229 KCLPALLIASKICGE------YPDLAEEGATFASRALECL 262 (446)
Q Consensus 229 ~~~~a~~~~~~~~~~------~~~~~~eA~~~~~~al~~~ 262 (446)
+.+..+...+...+. ..+.++.-...|.+++...
T Consensus 181 ~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 181 NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 666665544433332 2245566666777777754
No 381
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.44 E-value=1.6e+02 Score=36.10 Aligned_cols=82 Identities=12% Similarity=-0.059 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 298 QAKALQALVSAARST------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 298 ~~eAl~~~~~al~~~------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
..+-+-.+++++..+ +..-.+.|...|.+....|+++.|-.+.-+|.+..+ + .+..-.|-.+-.+|+-..|
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~-~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--P-EIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--c-hHHHHHHHHHHhhccHHHH
Confidence 455566666665233 223467899999999999999999999999988774 3 7888899999999999999
Q ss_pred HHHHHHHHhhc
Q 013299 372 ETILNAALDQT 382 (446)
Q Consensus 372 ~~~~~~al~~~ 382 (446)
+..+++.++.+
T Consensus 1722 l~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1722 LSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhh
Confidence 99999999654
No 382
>PF12854 PPR_1: PPR repeat
Probab=78.96 E-value=4.9 Score=24.56 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
+...|..|-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445666667777777777777776654
No 383
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.96 E-value=73 Score=31.79 Aligned_cols=18 Identities=22% Similarity=0.060 Sum_probs=11.7
Q ss_pred HHHCCChHHHHHHHHHHh
Q 013299 205 YYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 205 ~~~~g~~~eA~~~~~~al 222 (446)
++...++.+|..+-+..+
T Consensus 136 l~d~K~~kea~~~~~~~l 153 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALL 153 (493)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 344577777777766665
No 384
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.90 E-value=88 Score=32.68 Aligned_cols=164 Identities=15% Similarity=0.066 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcc-------hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh--------
Q 013299 247 LAEEGATFASRALECLGDGCD-------QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS-------- 311 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~-------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~-------- 311 (446)
-+++|...|.-++...+++.- ++.......++.+...+|... ...+..+.|+=.|++++ .
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e----~aadLieR~Ly~~d~a~-hp~F~~~sg 327 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDRE----MAADLIERGLYVFDRAL-HPNFIPFSG 327 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchh----hHHHHHHHHHHHHHHHh-ccccccccc
Confidence 355555555555554443321 123344555555555554321 12345567777777766 3
Q ss_pred ------hCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHH-HHccCHHHHHHHHHHH--
Q 013299 312 ------TNMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-SNLKGWLLMARIL-SAQKRYEDAETILNAA-- 378 (446)
Q Consensus 312 ------~~P~~~~---a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~~~la~~~-~~~g~~~eA~~~~~~a-- 378 (446)
++|.|-. +++.-=..+.+.|=+..|.+.++-.+.++|. +| .+...+-.+| .+..+|+=-+..++..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDP-l~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDP-LGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCc-hhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1222222 2233334556789999999999999999999 76 5555555555 3445676555555544
Q ss_pred ---HhhcCCCCcHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHh
Q 013299 379 ---LDQTGKWEQGELLRTKAKVQLVQGQ---LKGAVETYTHLLAALQ 419 (446)
Q Consensus 379 ---l~~~p~~~~~~~~~~~a~~~~~~g~---~~eA~~~~~~~l~l~~ 419 (446)
+...| |...-..+|..+..... ...|...+.+|+...|
T Consensus 407 ~n~l~~~P---N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 407 MNKLSQLP---NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hccHhhcC---CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 44556 33333345555555555 5678888888887776
No 385
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.38 E-value=7.5 Score=38.87 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
..++.+|.+|+=++||.+|+..|...+
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444
No 386
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.16 E-value=70 Score=34.86 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=59.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-hcCCCCcHHHHH----HHHHH
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD-QTGKWEQGELLR----TKAKV 397 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~~----~~a~~ 397 (446)
+-.++...|+|++|+.++.. +.|+.........|.+++.. ..++-...+-+.+. .++. +...... -.-.+
T Consensus 496 l~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~-~~~~~~s~~~~~~~~i 570 (933)
T KOG2114|consen 496 LDILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQ-GKGKSLSNIPDSIEFI 570 (933)
T ss_pred HHHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCC-CCCchhhcCccchhhe
Confidence 34455668899999998865 34544234555667776654 34444444444432 2210 1111110 01112
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhh
Q 013299 398 QLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRK 439 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 439 (446)
..-.+.+..-........++.|+..+..+..-....++.+++
T Consensus 571 ~if~~~~~~~~~Fl~~~~E~s~~s~e~~~i~~t~~~~~l~~~ 612 (933)
T KOG2114|consen 571 GIFSQNYQILLNFLESMSEISPDSEEVLEIIYTLLELSLMQK 612 (933)
T ss_pred eeeccCHHHHHHHHHHHHhcCCCchhhhccccchhhhhhhhc
Confidence 223455666666666677777777777766666666555553
No 387
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.09 E-value=5.6 Score=29.52 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhh
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESS 43 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~ 43 (446)
.+-.+..+|+-+.+.|++++|+..|+.+|+..-+.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999876443
No 388
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.66 E-value=1.3e+02 Score=34.14 Aligned_cols=20 Identities=10% Similarity=-0.112 Sum_probs=16.0
Q ss_pred HHHHHhCChHHHHHHHHHHh
Q 013299 71 ELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~al 90 (446)
.-+...++|.+|....++=.
T Consensus 685 r~~l~~~~y~~AF~~~RkhR 704 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEVMRKHR 704 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34678999999999998853
No 389
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=76.73 E-value=12 Score=37.16 Aligned_cols=84 Identities=21% Similarity=0.133 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC--------CCH-----H-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 293 DRATRQAKALQALVSAARSTNM--------RDL-----S-----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P--------~~~-----~-----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.+++.|..|..-|+.++ ++-. ..+ . +--.|..+|..+++.+-|+.+..+.+-++|.+. .-
T Consensus 187 yrqk~ya~Aa~rF~taL-elcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f-rn 264 (569)
T PF15015_consen 187 YRQKKYAVAAGRFRTAL-ELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF-RN 264 (569)
T ss_pred HhhHHHHHHHHHHHHHH-HHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh-hH
Confidence 46677888888888888 7532 111 1 113667778888888888888888888888773 66
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 013299 355 WLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
+.-.|.+...+.||.+|-...--|
T Consensus 265 HLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 265 HLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888776655433
No 390
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=76.38 E-value=43 Score=27.72 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
+.....+.+++.++ ..++.++..+..+..+|.+. +..+.+..++
T Consensus 21 ~~~~~l~~yLe~~~-~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESAL-KLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHH-ccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34678899999999 88899999999999998865 4456666666
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.28 E-value=20 Score=30.31 Aligned_cols=52 Identities=10% Similarity=-0.073 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~ 367 (446)
...+.....+......|++.-|.+..+.++..+|++ ..+...++.++..+|.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-EEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777777777777 4777777776655554
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.06 E-value=5.1 Score=26.36 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
++|+.+|.++|+.+.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666663
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.77 E-value=6.4 Score=22.93 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 332 KLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
+.+.|...|++++...|.+ ...|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~-~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKS-VELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCC-hHHHHHH
Confidence 3444455555555555544 2444443
No 394
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.46 E-value=18 Score=32.84 Aligned_cols=58 Identities=9% Similarity=-0.117 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 293 DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 293 ~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
.+.+..++|+...+.-+ +-+|.|....-.+=.++...|++++|..-++-+-++.|++.
T Consensus 12 L~~~sL~dai~~a~~qV-kakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 12 LDDNSLQDAIGLARDQV-KAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHhccHHHHHHHHHHHH-hcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45678899999999999 99999999999999999999999999999999999999974
No 395
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.91 E-value=16 Score=33.21 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=51.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+.+.+.+.+|+...+.-++-+|.+ ......+=.++.-.|+++.|..-++-+-.+.|
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtd-a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTD-AGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCcc-ccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 4567789999999999999999999 48988899999999999999999998888888
No 396
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.89 E-value=34 Score=34.90 Aligned_cols=102 Identities=12% Similarity=-0.008 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSI-LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a-~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
.+++++++...+. - ++-|.-|.- ...++..+.++|-.+.|++.. . ++ ...+.||. ..|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~-~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~-------~-D~-~~rFeLAl---~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAA-S-NLLPNIPKDQGQSIARFLEKKGYPELALQFV-------T-DP-DHRFELAL---QLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HH-H-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS-------S--H-HHHHHHHH---HCT-HHHHHH
T ss_pred cCChhhhhhhhhh-h-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc-------C-Ch-HHHhHHHH---hcCCHHHHHH
Confidence 4556666665542 2 334444333 456666777788888877543 2 22 55555554 5677777665
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..+ .. ++...|-.+|...+.+|+++-|.++|.++-++
T Consensus 340 ~a~-----~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 340 IAK-----EL--DDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HCC-----CC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred HHH-----hc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 542 22 46677888888888888888888888877554
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.75 E-value=61 Score=30.45 Aligned_cols=81 Identities=11% Similarity=-0.009 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HhhcCCCCHHHHHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML----------------LKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a----------------l~l~P~~~~~~~~~la~~ 361 (446)
..+|+.+- +.- .-.-.||+.+..+|..+.+.|++.+|..+|-.. ..-.|.. ...+...|.+
T Consensus 73 i~~ai~WS-~~~-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e-~dlfi~RaVL 149 (260)
T PF04190_consen 73 IKAAIKWS-KFG-SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE-ADLFIARAVL 149 (260)
T ss_dssp HHHHHHHH-HTS-S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS---HHHHHHHHHH
T ss_pred HHHHHHHH-ccC-CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc-hhHHHHHHHH
Confidence 45666666 333 444568999999999999999999999887422 1122333 2444444444
Q ss_pred -HHHccCHHHHHHHHHHHHhh
Q 013299 362 -LSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 362 -~~~~g~~~eA~~~~~~al~~ 381 (446)
+...|+...|...++.-++.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 56678889888877666655
No 398
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=73.73 E-value=26 Score=34.95 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+++-+.-|..++++|+|..|+--|+-+|+.+++-...+.|.....+ ++...-.-.-..+..+|+..++.+-|+..--+.
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~-di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAE-DISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChh-hHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 4555677889999999999999999999998775543333222111 222222233446778999999999999999999
Q ss_pred hCC
Q 013299 90 LLP 92 (446)
Q Consensus 90 l~~ 92 (446)
|-.
T Consensus 255 I~l 257 (569)
T PF15015_consen 255 INL 257 (569)
T ss_pred hhc
Confidence 988
No 399
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=73.70 E-value=7 Score=29.35 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 367 RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 367 ~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
-|+.|...+++||..+. .|+.++|+.+|++++...-
T Consensus 4 ~~~~A~~~I~kaL~~dE-----------------~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 4 YYKQAFEEISKALRADE-----------------WGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHHHHHhhhhh-----------------cCCHHHHHHHHHHHHHHHH
Confidence 45556666666655443 4666777777777766653
No 400
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.36 E-value=1.2e+02 Score=31.24 Aligned_cols=74 Identities=18% Similarity=0.016 Sum_probs=36.4
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 182 TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 182 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
..+.+.+... .+--+++.++.+|... ..++=....++.+ +.+=++...-..++.. +++ .+...+..+|.+++..
T Consensus 87 h~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~v--e~dfnDvv~~ReLa~~-yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 87 HLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLV--EYDFNDVVIGRELADK-YEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHH--HhcchhHHHHHHHHHH-HHH-hchhhHHHHHHHHHHH
Confidence 3444444432 3445566666666665 3444455555555 4454444433323322 332 4455566666666553
No 401
>PF12854 PPR_1: PPR repeat
Probab=72.14 E-value=11 Score=23.07 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
.-.|..|-..+.+.|++++|++.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444555555555555555544
No 402
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.51 E-value=8.7 Score=28.52 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=10.7
Q ss_pred HccCHHHHHHHHHHHHhh
Q 013299 364 AQKRYEDAETILNAALDQ 381 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~ 381 (446)
..|+|++|+.+|..|++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 456666666666666543
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.44 E-value=19 Score=32.01 Aligned_cols=51 Identities=12% Similarity=-0.004 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
..+..++..++.+ ...| ++.++.+++.++...|+.++|....+++..+-|.
T Consensus 126 ~l~~~~~~a~~~l-~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLL-RRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHH-HhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3455666777777 6666 5777777888888888888888888888888774
No 404
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.16 E-value=9.6 Score=22.44 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 198 YHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 198 ~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
|..+-..|.+.|++++|...|++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555666677777777777777655
No 405
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.75 E-value=18 Score=30.51 Aligned_cols=53 Identities=19% Similarity=0.065 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHH
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA 407 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA 407 (446)
+.....+.-....|+|.-|....+.++..+| +|..+...++.++.++|.-.+.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp--~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADP--DNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHhccC
Confidence 5566666667777888889999999998899 8888888888888888766543
No 406
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.55 E-value=8.5 Score=28.68 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIV 40 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~ 40 (446)
+-.+..+|+-..+.|+|++|+..|+.+|+.+
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999875
No 407
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=69.81 E-value=12 Score=28.10 Aligned_cols=35 Identities=17% Similarity=0.015 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhh
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~ 44 (446)
+..+..+|+++...|..++|+..|++.|+..+..+
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 55667899999999999999999999999887654
No 408
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=68.90 E-value=3.9 Score=39.57 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
+.-.....+++.+-...+.+..|+.....+++.++.. ..+++-.+..+....++++|+..++.+....| ++..+...
T Consensus 272 ~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~-tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p--~d~~i~~~ 348 (372)
T KOG0546|consen 272 ELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK-TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP--NDKAIEEE 348 (372)
T ss_pred ccccccccchHHhcccccCCCcceeccccccccChhh-CcHHHHHHhHHHhhhchhhhHHHHHHhhccCc--chHHHHHH
Confidence 3334455568888888999999999988888888888 48999999999999999999999999999999 66665443
Q ss_pred H
Q 013299 394 K 394 (446)
Q Consensus 394 ~ 394 (446)
+
T Consensus 349 ~ 349 (372)
T KOG0546|consen 349 L 349 (372)
T ss_pred H
Confidence 3
No 409
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.19 E-value=1.5e+02 Score=30.62 Aligned_cols=174 Identities=16% Similarity=0.067 Sum_probs=110.3
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
++.. .++.-++..++.+|... ..++-....++.++.+.++...--.|+..|.. ++-..+...|.+++. +.-|.--.
T Consensus 92 ~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y-rfI~~~q~ 167 (711)
T COG1747 92 VLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY-RFIPRRQN 167 (711)
T ss_pred HHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH-Hhcchhhh
Confidence 3443 67788899999999888 67788889999999999999888889888776 889999999999983 23332110
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---hHHHH----HhhchhHhhhhhhhchHHHHHHHHHHHHHH
Q 013299 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME---STANC----LLGISLSAQSKVAITDFDRATRQAKALQAL 305 (446)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~---~~a~~----~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~ 305 (446)
+ ++ .+..++..+..+++.+... ....- ..|.++.+.-. ..+....++++|++.+
T Consensus 168 ~-----~i-----------~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~---~~Ys~~eN~~eai~Il 228 (711)
T COG1747 168 A-----AI-----------KEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY---KKYSENENWTEAIRIL 228 (711)
T ss_pred h-----hH-----------HHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHH---HHhccccCHHHHHHHH
Confidence 0 00 0112222222221111000 00000 11111111100 0112245789999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhcCCC
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAE--------------------QRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~--------------------~~~~~~A~~~~~~al~l~P~~ 350 (446)
.-.+ +.|..|.-+.-++-..+.. -.++-+++..|++-+-.+.++
T Consensus 229 k~il-~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 229 KHIL-EHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHh-hhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 9999 9999998888777666655 457888888888888887765
No 410
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.48 E-value=11 Score=27.17 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~ 42 (446)
-.+..+|......|++++|+..|.++++....
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999987543
No 411
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.13 E-value=18 Score=26.88 Aligned_cols=29 Identities=21% Similarity=0.082 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..+|.-..+.|++++|+.+|..+++..-.
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34445555577777777777777777644
No 412
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=67.10 E-value=92 Score=27.65 Aligned_cols=170 Identities=14% Similarity=0.029 Sum_probs=103.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-
Q 013299 136 NNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFS-----IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG- 209 (446)
Q Consensus 136 ~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 209 (446)
.++++|..++... -.. -..+...+.+|.-+. ..+++..|++.|..+-. -+.+.+..++|.+++.-.
T Consensus 49 knF~~A~kv~K~n-----Cde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~ 120 (248)
T KOG4014|consen 49 KNFQAAVKVFKKN-----CDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEK 120 (248)
T ss_pred HHHHHHHHHHHhc-----ccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcC
Confidence 4577776654211 111 123444555555443 24588999999999887 468899999999998643
Q ss_pred ----C--hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHh
Q 013299 210 ----E--DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSA 283 (446)
Q Consensus 210 ----~--~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 283 (446)
+ .+.|+..+.++- +-++..+.++++..++... +. +....|+.-. +.-...+|++.
T Consensus 121 ~r~~dpd~~Ka~~y~traC----dl~~~~aCf~LS~m~~~g~---~k-------~~t~ap~~g~---p~~~~~~~~~~-- 181 (248)
T KOG4014|consen 121 DRKADPDSEKAERYMTRAC----DLEDGEACFLLSTMYMGGK---EK-------FKTNAPGEGK---PLDRAELGSLS-- 181 (248)
T ss_pred CccCCCCcHHHHHHHHHhc----cCCCchHHHHHHHHHhccc---hh-------hcccCCCCCC---Ccchhhhhhhh--
Confidence 3 678899999988 4455666666666654321 11 2221232111 11112233332
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhc
Q 013299 284 QSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ----RKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 284 ~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~----~~~~~A~~~~~~al~l~ 347 (446)
.+.++|++.--+|. ++ +++.+--|++..|..- .+.++|+.+-++|.++.
T Consensus 182 ------------kDMdka~qfa~kAC-el--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 182 ------------KDMDKALQFAIKAC-EL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred ------------HhHHHHHHHHHHHH-hc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 35678888888888 55 4667777777777643 47788888888887764
No 413
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.56 E-value=72 Score=29.45 Aligned_cols=116 Identities=9% Similarity=0.070 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL-SAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
-+..++.+..+.|++++.+.+.++++..+|+-..+=...++.++ ...|..-.++..+...........+.. .. ..+
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~-~~--~~i 79 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEK-QV--KLI 79 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH-HH--HHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhH-HH--HHH
Confidence 35678899999999999999999999998876445666777766 334666666666655554333101111 11 111
Q ss_pred HHHhCC-HHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhh
Q 013299 398 QLVQGQ-LKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMR 438 (446)
Q Consensus 398 ~~~~g~-~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 438 (446)
..-..+ .++=...|..++.+....--....++ ++.|+|.+
T Consensus 80 ~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~-eskvfy~K 120 (236)
T PF00244_consen 80 KDYKKKIEDELIDICNEIIRLIDKSLIPSATSP-ESKVFYYK 120 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-hHHHHHHH
Confidence 111112 24556778888888876544444333 47777765
No 414
>PF13041 PPR_2: PPR repeat family
Probab=66.54 E-value=28 Score=23.01 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
..|..+-..+.+.|++++|+..|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 56777777777777777777777777754
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.71 E-value=71 Score=31.87 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHccC
Q 013299 295 ATRQAKALQALVSAARSTNMRDLS--ILYRL--SLEYAEQRKLNAAHYYAKMLLKLEGG---SNLKGWLLMARILSAQKR 367 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~--a~~~l--g~~~~~~~~~~~A~~~~~~al~l~P~---~~~~~~~~la~~~~~~g~ 367 (446)
.++|..|...|...+ ..-|.+.. .+..+ |..+-..-++++|...+++.+...-. . ...+..+..+.
T Consensus 144 ~~~y~aA~~~l~~l~-~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~-~~~l~~~~~~~----- 216 (379)
T PF09670_consen 144 RYDYGAAARILEELL-RRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQE-REGLKELVEVL----- 216 (379)
T ss_pred cCCHHHHHHHHHHHH-HhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhH-HHHHHHHHHHH-----
Confidence 457899999999999 64344443 44555 44455788999999999998764211 1 12222222222
Q ss_pred HHHHHHHHHHHHhhcCCC-Cc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 368 YEDAETILNAALDQTGKW-EQ-----GELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 368 ~~eA~~~~~~al~~~p~~-~~-----~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
++...+.......... .. ..-++..|.--...|+++.|+..+=+++++.=
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 217 --KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA 272 (379)
T ss_pred --HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 2222222222221100 01 11122233333568999999998888888753
No 416
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=65.70 E-value=95 Score=29.47 Aligned_cols=131 Identities=17% Similarity=0.127 Sum_probs=69.8
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcH--HHHHHHHHH---HHHCCCh----HHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRK--ERYHILALC---YYGAGED----LVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~---~~~~g~~----~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
.+...++|++--+.|.+..+...++. +.-|..+.. +...... ..-...++.-+ +-.|++..+++..|..
T Consensus 9 ~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv--~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 9 ELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWV--AACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHH--HHCCCChHHHHHHHHH
Confidence 34566777777777776654433211 111222211 1122111 13567777778 7899998888876655
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013299 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~ 320 (446)
+.. + ++...|..+.+.-.. ..+.-.....+.|...+.+|+ +++|+...+.
T Consensus 87 ~~~-------------~---------------Aw~~RG~~~A~~V~~-~~W~~~~~~~d~A~~~ll~A~-~l~pr~~~A~ 136 (277)
T PF13226_consen 87 WVH-------------R---------------AWDIRGSGYASTVTE-AQWLGAHQACDQAVAALLKAI-ELSPRPVAAA 136 (277)
T ss_pred HHH-------------H---------------HHHHHccchhcccCH-HHHHHHHHHHHHHHHHHHHHH-hcCCCchHHH
Confidence 432 1 222222222110000 000011224588999999999 9999999888
Q ss_pred HHHHHHHHHcCC
Q 013299 321 YRLSLEYAEQRK 332 (446)
Q Consensus 321 ~~lg~~~~~~~~ 332 (446)
..+-.+-...|.
T Consensus 137 ~~m~~~s~~fge 148 (277)
T PF13226_consen 137 IGMINISAYFGE 148 (277)
T ss_pred HHHHHHHhhcCC
Confidence 777665544443
No 417
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=65.64 E-value=11 Score=28.06 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVE 41 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~ 41 (446)
+-.+..+|....+.|+|++|+..|.++|+.+-
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999998753
No 418
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.41 E-value=32 Score=25.53 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 369 EDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 369 ~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
.+|++.+.+++...| |+..-..
T Consensus 30 ~~aIe~L~q~~~~~p--D~~~k~~ 51 (75)
T cd02682 30 KKAIEVLSQIVKNYP--DSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHHhCC--ChHHHHH
Confidence 334444445555667 5554333
No 419
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.70 E-value=16 Score=26.33 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+...|.-..+.|++++|+..|.++++..-.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 445566666788888999999888887754
No 420
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=61.99 E-value=8.7 Score=37.26 Aligned_cols=67 Identities=12% Similarity=-0.075 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
+++..-...+.+..|+.....++..++....+++..|..+....++++|+..++.+. ...|++....
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~--~~~p~d~~i~ 346 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAK--QKAPNDKAIE 346 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhh--ccCcchHHHH
Confidence 466777778888888888788888999999999999999999999999999999999 8999987654
No 421
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=61.68 E-value=68 Score=26.90 Aligned_cols=80 Identities=18% Similarity=0.052 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
+.++...-+..+. +...+.+....--.++..+|+-++--..+....+-+..+|+....+|.+|...|+..+
T Consensus 68 ~C~NlKrVi~C~~---------~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~ 138 (161)
T PF09205_consen 68 KCGNLKRVIECYA---------KRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTRE 138 (161)
T ss_dssp G-S-THHHHHHHH---------HTT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHH
T ss_pred hhcchHHHHHHHH---------HhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhh
Confidence 4455655555431 1233444444445567788888888888888887777788999999999999999999
Q ss_pred HHHHHHHHh
Q 013299 214 ALNLLRTLL 222 (446)
Q Consensus 214 A~~~~~~al 222 (446)
|-..+++|-
T Consensus 139 ~~ell~~AC 147 (161)
T PF09205_consen 139 ANELLKEAC 147 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 422
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=60.79 E-value=22 Score=32.67 Aligned_cols=19 Identities=21% Similarity=-0.066 Sum_probs=11.0
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 013299 243 EYPDLAEEGATFASRALEC 261 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~ 261 (446)
.+.|+++.|+.+.+-||+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~ 112 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEH 112 (230)
T ss_pred eeccCHHHHHHHHHHHHHc
Confidence 3455666666666666654
No 423
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.80 E-value=68 Score=29.78 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=12.1
Q ss_pred HHHHHhCChHHHHHHHHHHh
Q 013299 71 ELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 71 ~~~~~~g~~~eA~~~y~~al 90 (446)
.+|+..|+..+|+.-+++=+
T Consensus 18 rl~l~~~~~~~Av~q~~~H~ 37 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQFRAHI 37 (247)
T ss_pred HHHHhCCCHHHHHHHHHHHH
Confidence 55666666666666655533
No 424
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.77 E-value=74 Score=31.75 Aligned_cols=59 Identities=15% Similarity=0.023 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH--HhcCCC--CHHHHHHHHHHHHH
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI--CGEYPD--LAEEGATFASRALE 260 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~--~~~~~~--~~~eA~~~~~~al~ 260 (446)
...+..++..++|..|...++..+ ..-|++.. +-.+..+ +|...+ ++++|.+++++.+.
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~--~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELL--RRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH--HhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445777889999999999999999 43344333 2222222 233333 35677777777665
No 425
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.04 E-value=22 Score=26.51 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+...|.-....|++++|+.+|.++++.+-.
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 444556666688889999999888888754
No 426
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=56.85 E-value=24 Score=21.62 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=13.7
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHh
Q 013299 318 SILYRLS--LEYAEQR-----KLNAAHYYAKMLLK 345 (446)
Q Consensus 318 ~a~~~lg--~~~~~~~-----~~~~A~~~~~~al~ 345 (446)
++.+.+| .++.... +.++|+..|++|.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4555566 4333322 34555555555543
No 427
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=56.00 E-value=22 Score=26.22 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~ 44 (446)
..+..+|+.....|++++|+..|.++++.+....
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999998765543
No 428
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=55.40 E-value=41 Score=19.77 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=11.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 338 YYAKMLLKLEGGSNLKGWLLMARIL 362 (446)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~~ 362 (446)
....+++..+|.+ -.+|..+-.++
T Consensus 4 ~~~~~~l~~~pkn-ys~W~yR~~ll 27 (31)
T PF01239_consen 4 EFTKKALEKDPKN-YSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHSTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHCccc-ccHHHHHHHHH
Confidence 3444444555554 24444444433
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.09 E-value=1e+02 Score=28.58 Aligned_cols=72 Identities=14% Similarity=-0.023 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 013299 6 ISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMS 85 (446)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~ 85 (446)
.|.........|..|+..|+|++|...++.+.....+ + .| ...+...+..+-.++...|+.++.+.+
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-------e---gW---~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR-------E---GW---WSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-------C---Cc---HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4666677788999999999999999999998654321 1 11 123456777777899999999988776
Q ss_pred HHHHh
Q 013299 86 YRRAL 90 (446)
Q Consensus 86 y~~al 90 (446)
.=+.+
T Consensus 241 ~leLl 245 (247)
T PF11817_consen 241 SLELL 245 (247)
T ss_pred HHHHh
Confidence 55443
No 430
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.03 E-value=1e+02 Score=30.77 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=39.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEG----GSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P----~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
=..|...+.++.|.....++.--+. +. +...+.+|.|...+++|.+|..++-+|+...|
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~-ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEW-ARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHH-HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 3445556777777777776642111 11 24556678888888888888888888888777
No 431
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=53.92 E-value=30 Score=20.25 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 197 RYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 197 ~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.|..+-.++.+.|+++.|...|+.-.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555566666666666665544
No 432
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=52.96 E-value=24 Score=26.23 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=24.8
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHH
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIV 40 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~ 40 (446)
.+..+|..-...|+|++|+..|.++|+.+
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999876
No 433
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.59 E-value=2.9e+02 Score=28.73 Aligned_cols=71 Identities=10% Similarity=-0.012 Sum_probs=55.6
Q ss_pred CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh---hcCCC---CHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhcC
Q 013299 313 NMRDLSIL-YRLSLEYAEQRKLNAAHYYAKMLLK---LEGGS---NLKGWLLMARILSAQKR-YEDAETILNAALDQTG 383 (446)
Q Consensus 313 ~P~~~~a~-~~lg~~~~~~~~~~~A~~~~~~al~---l~P~~---~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p 383 (446)
|+++.-.. +-+|.++...|+-..|..+|+..+. ....+ ..-+++-+|..+..+|. ..++.+++.+|-+-..
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 44444333 3569999999999999999999883 22222 12789999999999999 9999999999988765
No 434
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=52.03 E-value=22 Score=20.27 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhh
Q 013299 167 LSFAFSIAGDLSSLATQIEEL 187 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~a 187 (446)
+-.++.+.|++++|.+.|++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 334444444444444444443
No 435
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.69 E-value=60 Score=30.70 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH---HHccCH---H
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--RKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL---SAQKRY---E 369 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~--~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~---~~~g~~---~ 369 (446)
.+.-+.....++ +-+|.+...|...-.++..- .++..=+...++.+..||.+ ..+|...-+++ ...+++ .
T Consensus 90 ldneld~~~~~l-k~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrN-yH~W~YR~~vl~~ie~~~N~S~~k 167 (328)
T COG5536 90 LDNELDFLDEAL-KDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRN-YHVWSYRRWVLRTIEDLFNFSDLK 167 (328)
T ss_pred hhcHHHHHHHHH-hcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccc-cceeeeEeeeeecchhhccchhHH
Confidence 345566788889 89999999999998887764 56788888899999999998 58888666555 222333 3
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHH---HHHHHHhCCH------HHHHHHHHHHHHHHhhhhhhcc
Q 013299 370 DAETILNAALDQTGKWEQGELLRTK---AKVQLVQGQL------KGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~~~~~~~~~---a~~~~~~g~~------~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
.-.++-..++..++ -|..+|.++ -......|++ ++-++..-..+-..|++..+|+
T Consensus 168 ~e~eytt~~I~tdi--~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~ 231 (328)
T COG5536 168 HELEYTTSLIETDI--YNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWG 231 (328)
T ss_pred HHHHhHHHHHhhCC--CChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhh
Confidence 33445556667778 677887766 2223334443 2333333344444444554444
No 436
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.49 E-value=2.4e+02 Score=27.49 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=13.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 357 LMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 357 ~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.++.+-.++|+..||++.++...+..|
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 344555555555555555554444444
No 437
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.37 E-value=30 Score=25.55 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHh
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~ 42 (446)
+..+..+|+-....|++++|+..|.++++.+-.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999999987643
No 438
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=50.66 E-value=30 Score=20.66 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 013299 318 SILYRLSLEYAEQ----RKLNAAHYYAKMLLK 345 (446)
Q Consensus 318 ~a~~~lg~~~~~~----~~~~~A~~~~~~al~ 345 (446)
.+.+.||..|..- .+.++|...|++|..
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3455566555432 255666666666544
No 439
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.36 E-value=1.1e+02 Score=24.10 Aligned_cols=37 Identities=22% Similarity=0.106 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
-|..|-.||.+|.+.|+.+.|.+.|+.-- ++.|+...
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~~ 107 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESGV 107 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccchh
Confidence 34556667777777777777777777665 66776554
No 440
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=50.30 E-value=2.1e+02 Score=26.55 Aligned_cols=174 Identities=14% Similarity=0.078 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCC-CC--CcHHHHHHHHHHHHH-CCChHHHHHHHHHHhcCC-CCCCChHHHHHHHHH
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPG-II--NRKERYHILALCYYG-AGEDLVALNLLRTLLSGS-EDPKCLPALLIASKI 240 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~-~p--~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~-~~P~~~~a~~~~~~~ 240 (446)
.++.+..+.++|++.+.+..+++.. +| =+.+-.+-|..+|-. .|....+...+...-. + ...++.. ...+..-
T Consensus 6 ~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~-ke~~~~~~~-~~~~~~~ 83 (244)
T smart00101 6 YMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQ-KEESRGNED-HVASIKE 83 (244)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHH-hhhccCchH-HHHHHHH
Confidence 4666777789999999999998876 43 445566667777664 4777788777765321 1 1111111 1101111
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcC----CCcchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh---
Q 013299 241 CGEYPDLAEEGATFASRALECLG----DGCDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--- 311 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~----~~~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~--- 311 (446)
+-. .--++=...+..++..+. |......+.+++ ..|..|......... .++..-.++|..+|++|. +
T Consensus 84 yr~--kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~-~e~~~~~~~a~~aY~~A~-e~a~ 159 (244)
T smart00101 84 YRG--KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTG-AERKEAAENTLVAYKSAQ-DIAL 159 (244)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHH-HHHH
Confidence 110 112233444455554431 221111223322 245555544432211 122334567777777776 5
Q ss_pred --hCCCCHHHH---HHHHHHHH-HcCCHHHHHHHHHHHHh
Q 013299 312 --TNMRDLSIL---YRLSLEYA-EQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 312 --~~P~~~~a~---~~lg~~~~-~~~~~~~A~~~~~~al~ 345 (446)
+.|.||--+ .|.+..|+ .+++.++|....++|+.
T Consensus 160 ~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 160 AELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346666422 34444444 35777777766666554
No 441
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=48.42 E-value=46 Score=35.01 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRT 220 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 220 (446)
......+..+...++.++|-++|++.+..+|+ +.++..+..+.+.|-...|...+++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 43 LAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred HHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 34455677788889999999999999999999 7889999999999999999988884
No 442
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.54 E-value=1.5e+02 Score=31.25 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
+-+...+.++|+ ++-|+. +-.+-|+ .+.|+++.|.+...++ ++ ..=|..||...+..|++.-|.+++.+
T Consensus 623 Fle~~g~~e~AL-~~s~D~-d~rFela---l~lgrl~iA~~la~e~-----~s-~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 623 FLESQGMKEQAL-ELSTDP-DQRFELA---LKLGRLDIAFDLAVEA-----NS-EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HhhhccchHhhh-hcCCCh-hhhhhhh---hhcCcHHHHHHHHHhh-----cc-hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 344555666677 665543 3344444 4578888887765544 44 37788888888888999988888888
Q ss_pred HHh
Q 013299 378 ALD 380 (446)
Q Consensus 378 al~ 380 (446)
+-.
T Consensus 692 a~d 694 (794)
T KOG0276|consen 692 ARD 694 (794)
T ss_pred hcc
Confidence 754
No 443
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=47.36 E-value=6.3 Score=41.31 Aligned_cols=117 Identities=22% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 301 ALQALVSAARSTNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLL--KLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 301 Al~~~~~al~~~~P~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
|..++.+|- ...+.. ...+..-+.++...|+++.|...+.+.- .++|..........|.+...+|++++|+..+..
T Consensus 8 A~~yL~~A~-~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 8 AEQYLQQAQ-QASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-hcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 333444555 444433 3344455788899999999999999876 456665445666778999999999999999874
Q ss_pred H--HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 378 A--LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 378 a--l~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
. ..+.+ ......+..++.++...|+.-+|...+-.+-.+.+
T Consensus 87 ~~~~~l~~-~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 87 QDLWQLPP-EQQARYHQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp --------------------------------------------
T ss_pred CCcccCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 2 12222 12345566789999999999888888776655554
No 444
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=47.14 E-value=36 Score=25.19 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHH
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVE 41 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~ 41 (446)
-.+..+|......|+|++|...|.++|+.+-
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999998753
No 445
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=46.63 E-value=38 Score=24.79 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=26.4
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHh
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~ 42 (446)
.+..+|+.....|++++|+..|..+++.+-.
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3556889999999999999999999987644
No 446
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=46.31 E-value=22 Score=34.11 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=18.5
Q ss_pred HHhCChHHHHHHHHHHhCCCC
Q 013299 74 KLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 74 ~~~g~~~eA~~~y~~al~~~~ 94 (446)
.+.|..-+|+..|+.|+++++
T Consensus 30 Eq~G~l~dai~fYR~AlqI~~ 50 (366)
T KOG2997|consen 30 EQDGSLYDAINFYRDALQIVP 50 (366)
T ss_pred hhcCcHHHHHHHHHhhhcCCc
Confidence 478999999999999999943
No 447
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=45.13 E-value=3.1e+02 Score=26.91 Aligned_cols=171 Identities=20% Similarity=0.126 Sum_probs=96.8
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcC--CCCCC--ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CcchhhhH
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSG--SEDPK--CLPALLIASKICGEYPDLAEEGATFASRALECLGD--GCDQMEST 272 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~--~~~P~--~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~--~~~~~~~~ 272 (446)
-.|..+|+..++|.+|+......++. +++.+ -+++++.-...++. ..+...|...+.-|-...+. -++.+.+.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~-l~Nl~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHA-LRNLPKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHH-HhcchhHHHHHHHHHHhhcccccCHHHHHH
Confidence 45788899999999999887665520 34433 23344444555443 34555555555544332111 01112233
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC---CCCHHHHHHH---HHHHHHcCCHHH--HHHHHHHHH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN---MRDLSILYRL---SLEYAEQRKLNA--AHYYAKMLL 344 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~---P~~~~a~~~l---g~~~~~~~~~~~--A~~~~~~al 344 (446)
.-..-|+.+... .+|.-|..+|=+|. +-- -++..+...| =.+-...+..++ ++-.-+.++
T Consensus 211 lDLqSGIlha~e-----------kDykTafSYFyEAf-Egf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l 278 (411)
T KOG1463|consen 211 LDLQSGILHAAE-----------KDYKTAFSYFYEAF-EGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL 278 (411)
T ss_pred HHHhccceeecc-----------cccchHHHHHHHHH-ccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH
Confidence 333445555443 34666666666666 532 2234544433 333344566665 455556667
Q ss_pred hhcCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhhcC
Q 013299 345 KLEGGSNLKGWLLMARILSA--QKRYEDAETILNAALDQTG 383 (446)
Q Consensus 345 ~l~P~~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~p 383 (446)
+.+..+ ..+....+..+.. +.+|+.|+.-|..-+..+|
T Consensus 279 ~y~g~~-i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 279 KYAGRD-IDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred hccCcc-hHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 766655 4777777777644 5788999999988887776
No 448
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=45.10 E-value=47 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
...|.-....|++++|+..|.++++.+-.
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34445555678888888888888877644
No 449
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.09 E-value=3e+02 Score=26.41 Aligned_cols=117 Identities=12% Similarity=0.204 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHccCH
Q 013299 299 AKALQALVSAARSTNMRD-----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRY 368 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~~~~~g~~ 368 (446)
++-++-+.+.+++...+| .+++-++|.-|.+.++.+.+.+.+.+.++-.-.- -.-+-..+|.++..+.=.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 445555544442444444 6799999999999999999999888876643221 012445678888887778
Q ss_pred HHHHHHHHHHHhhcCCCCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 369 EDAETILNAALDQTGKWEQGE-LLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 369 ~eA~~~~~~al~~~p~~~~~~-~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
++-++..+-.++.-.+|+... .-...|.-.+...+|.+|-..+...+
T Consensus 172 ~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 172 EESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 888888888888777664321 12234555566667777777665544
No 450
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.19 E-value=34 Score=36.77 Aligned_cols=86 Identities=15% Similarity=0.005 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHH
Q 013299 296 TRQAKALQALVSAARSTNMRD----LSILYRLSLEYAE--QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~----~~a~~~lg~~~~~--~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~ 369 (446)
..+.++.--|..++ .+-|++ ...+.+.+.+++. .|++..++..+.-|+...|.. ..++.-.+..|...++++
T Consensus 67 ~d~~~~~~~~~~~~-~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i-~~~Ll~r~~~y~al~k~d 144 (748)
T KOG4151|consen 67 RDYEGAMFRYDCAI-KLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRI-SKALLKRARKYEALNKLD 144 (748)
T ss_pred hhhhccchhhhhhh-eeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchH-HHHHhhhhhHHHHHHHHH
Confidence 34455555555555 555532 2233344444444 346666666666666666666 366666666666666666
Q ss_pred HHHHHHHHHHhhcC
Q 013299 370 DAETILNAALDQTG 383 (446)
Q Consensus 370 eA~~~~~~al~~~p 383 (446)
-|+.-+.-.....|
T Consensus 145 ~a~rdl~i~~~~~p 158 (748)
T KOG4151|consen 145 LAVRDLRIVEKMDP 158 (748)
T ss_pred HHHHHHHHHhcCCC
Confidence 66666555555556
No 451
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=42.74 E-value=63 Score=23.90 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..|.-....|++++|+..|.++++.+-.
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3444455578888999999888888754
No 452
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.40 E-value=3.3e+02 Score=26.46 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--cCCCCcH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-------NLKGWLLMARILSAQKRYEDAETILNAALDQ--TGKWEQG 388 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~ 388 (446)
.....||.+|...+++..|-+.+.- +.++.+. -...+..+|.+|...++-.+|..+..++--+ +. .|.
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~--~Ne 180 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES--SNE 180 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--cCH
Confidence 3456788888888888888776632 2333211 0134556788888888888888888776422 22 233
Q ss_pred HH--HH--HHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 389 EL--LR--TKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 389 ~~--~~--~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
.+ .+ -.|.++...++|-||-..|-++..
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22 336677788888888877776544
No 453
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.32 E-value=1.3e+02 Score=23.70 Aligned_cols=47 Identities=19% Similarity=0.003 Sum_probs=34.1
Q ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 303 QALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 303 ~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.++++- ..+ |--|..+-.||.+|...|+-+.|...|+.--++.|++
T Consensus 58 ~~~ek~~-ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 58 KYLEKIG-AKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred HHHHHHh-hcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 3445544 333 3345677888888888888888888888888888886
No 454
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=42.16 E-value=3.8e+02 Score=27.04 Aligned_cols=172 Identities=15% Similarity=0.050 Sum_probs=88.3
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCC----
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLP-CWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRN---- 136 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~-~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~---- 136 (446)
.+.-+.+||.+++-.|+|+-|...|+-+.+. ...-.....+..+...+..++..+.... .-...+
T Consensus 207 ~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~----------~k~~~~~~~~ 276 (414)
T PF12739_consen 207 PEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSIS----------AKIRKDEIEP 276 (414)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCc----------cccccccHHH
Confidence 4567778999999999999999999998875 1000111111123333433333221100 000111
Q ss_pred cHHHHHHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC----CCC---cHHHHHHHHHHHH
Q 013299 137 NIEEAILLLMILLRKVAL---KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG----IIN---RKERYHILALCYY 206 (446)
Q Consensus 137 ~~~eA~~~l~~~~~~~~l---~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~ 206 (446)
-+|.|...|.. ... ...+...-+....+.++...|.+.+|...+-+.... +-. ..-.+-+.|.++
T Consensus 277 ~le~A~~~Y~~----~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~- 351 (414)
T PF12739_consen 277 YLENAYYTYLK----SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY- 351 (414)
T ss_pred HHHHHHHHHHh----hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-
Confidence 23444444321 100 011122334456667777788877766554444322 111 222233333333
Q ss_pred HCCChHHHHHHHHHHhcCCC-CC--C-----ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013299 207 GAGEDLVALNLLRTLLSGSE-DP--K-----CLPALLIASKICGEYPDLAEEGATFASRALECLG 263 (446)
Q Consensus 207 ~~g~~~eA~~~~~~al~~~~-~P--~-----~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 263 (446)
..+ .. .| . -...++.+++--+...|+...|+.+|.+|+....
T Consensus 352 -------------~~~--~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 -------------ASL--RSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -------------ccc--ccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 112 11 12 1 1124566777778889999999999999998654
No 455
>PRK09687 putative lyase; Provisional
Probab=42.11 E-value=3.1e+02 Score=26.01 Aligned_cols=223 Identities=12% Similarity=0.045 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCCh----HHHHHHHHHHhcCCCCCCChHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGED----LVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----~eA~~~~~~al~~~~~P~~~~a 233 (446)
..+..+......++...|. +++.....+++. ..++.....-+.++...|+. +++...+...+ ..+|+ +.+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~--~~D~d-~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA--LEDKS-ACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH--hcCCC-HHH
Confidence 3455556666666666664 334444444432 33566666666777777763 46777777775 34554 332
Q ss_pred HH----HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 234 LL----IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 234 ~~----~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
.. .+|.++.........++..+..++. +++ +.+......++...+ -++|+..+..++
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~--D~~-----~~VR~~a~~aLg~~~------------~~~ai~~L~~~L 168 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF--DKS-----TNVRFAVAFALSVIN------------DEAAIPLLINLL 168 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh--CCC-----HHHHHHHHHHHhccC------------CHHHHHHHHHHh
Confidence 22 2222211111111233343333333 111 122222222221111 257888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 310 RSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
. + +|+.+...-...+...+ ...++...+.+++. +++ ..+...-...+...|+ ..|+..+-+.++. + +
T Consensus 169 -~-d-~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-D~~--~~VR~~A~~aLg~~~~-~~av~~Li~~L~~-~--~-- 236 (280)
T PRK09687 169 -K-D-PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-DKN--EEIRIEAIIGLALRKD-KRVLSVLIKELKK-G--T-- 236 (280)
T ss_pred -c-C-CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-CCC--hHHHHHHHHHHHccCC-hhHHHHHHHHHcC-C--c--
Confidence 4 3 44456665555555443 35577777777773 444 2555555566666666 6788888887763 3 2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.....+..+-+.|.. +|+..+.++++-++
T Consensus 237 -~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 237 -VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred -hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 334555666777775 68888888877554
No 456
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=42.00 E-value=36 Score=32.67 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..++|+..|++|+ . ..+.|.+-+|+..|+.|+++-|+-
T Consensus 15 ~~kkA~~l~~~av-~---------------~Eq~G~l~dai~fYR~AlqI~~di 52 (366)
T KOG2997|consen 15 LAKKAIALYEKAV-L---------------KEQDGSLYDAINFYRDALQIVPDI 52 (366)
T ss_pred HHHHHHHHHHHHH-H---------------HhhcCcHHHHHHHHHhhhcCCchH
Confidence 4578888888888 3 445688899999999999998873
No 457
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.20 E-value=2e+02 Score=23.69 Aligned_cols=76 Identities=12% Similarity=-0.024 Sum_probs=53.0
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
-+-+.|...++.+.+-.|+--|++++...+........+. + ++-.......+.++.+|..+|+.+=.+++++-|-+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el---~-dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIEL---E-DLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccH---H-HHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456777888999999999999999987665431111110 0 22223345678899999999999999998876543
No 458
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=41.05 E-value=87 Score=22.91 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=17.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.|.-....|++++|+..|.++++..-.
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344444567777777777777776644
No 459
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.97 E-value=2.9e+02 Score=27.62 Aligned_cols=56 Identities=23% Similarity=0.104 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCc-----HHHHHHH--HHHHHHCCChHHHHHHHHHHh
Q 013299 167 LSFAFSIAGDLSSLATQIEELLPGIINR-----KERYHIL--ALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l--g~~~~~~g~~~eA~~~~~~al 222 (446)
.+..+...++|..|.+.|+.++...+.. ...+..+ |..+|..-++++|...+++.+
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~ 198 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPL 198 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhcc
Confidence 4557788999999999999999876422 2333444 556677889999999999744
No 460
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.87 E-value=1.2e+02 Score=27.98 Aligned_cols=21 Identities=10% Similarity=-0.266 Sum_probs=19.1
Q ss_pred HHHHhCChHHHHHHHHHHhCC
Q 013299 72 LWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 72 ~~~~~g~~~eA~~~y~~al~~ 92 (446)
..+..|+++.|+.+.+-+|+.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~ 112 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEH 112 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHc
Confidence 457999999999999999988
No 461
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.50 E-value=67 Score=33.75 Aligned_cols=81 Identities=17% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
+.+..++..+..+|-.++| |.+.||. .-.+-+ ..+.|+++.|.+...++ ++..-|-.+|.+
T Consensus 615 ~~rt~va~Fle~~g~~e~A-------L~~s~D~--d~rFel---al~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQA-------LELSTDP--DQRFEL---ALKLGRLDIAFDLAVEA-------NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhHHhHhhhccchHhh-------hhcCCCh--hhhhhh---hhhcCcHHHHHHHHHhh-------cchHHHHHHHHH
Confidence 3456677777777766655 4566663 333333 34779999987665433 455668889999
Q ss_pred HHHhCCHHHHHHHHHHHHHH
Q 013299 398 QLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l~l 417 (446)
.+..|++.-|.+++.++.++
T Consensus 676 al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARDL 695 (794)
T ss_pred HhhcccchhHHHHHHhhcch
Confidence 99999999999999988554
No 462
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=40.45 E-value=72 Score=23.30 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..|.-....|++++|+..|..+++..-.
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444455568888888888888877654
No 463
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=40.36 E-value=1.3e+02 Score=25.32 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
+..+|..+..+|.+|.+.|+..+|-+.+++|.+
T Consensus 116 ~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344455555555555555555555555555543
No 464
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=40.32 E-value=2.3e+02 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.059 Sum_probs=15.1
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhhcCC
Q 013299 322 RLSLEYAEQR-KLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 322 ~lg~~~~~~~-~~~~A~~~~~~al~l~P~ 349 (446)
.+|..+...| +.++|..+|-+|+..-|+
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 4455555555 555555555555555554
No 465
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.15 E-value=62 Score=19.69 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013299 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMA 359 (446)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la 359 (446)
.++.|...|++.+...|+ + ..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~-~-k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-V-KNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-c-hHHHHHH
Confidence 356666667777666665 2 5665544
No 466
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=3.9e+02 Score=26.26 Aligned_cols=286 Identities=16% Similarity=0.089 Sum_probs=158.5
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHH---HHHHh
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMS---YRRAL 90 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~---y~~al 90 (446)
+.++.......+.++++..+++++... . .|++... .+. .-++++..+|.+|.+.|+.++=-.. .|..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~-----~-~~~s~e~--~i~-~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~ 78 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKA-----Q-GASSDEA--RIK-EKEQSILELGDLLAKEGDAEELRDLITSLRPFL 78 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhh-----c-cccCCHH--HHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 677888888899999999999999741 1 2322221 111 1356777889999999998765333 23333
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHH------HHHhhcCCCCHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR------KVALKRIEWDPSIL 164 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~------~~~l~~~p~~~~~~ 164 (446)
.. +...-...+.+.+-...+. ++ +..+.-+.+...++. +..+++ ..-
T Consensus 79 ~~---v~KakaaKlvR~Lvd~~~~------------------~~-~~~~~~i~l~~~cIeWA~~ekRtFLRq-----~Le 131 (411)
T KOG1463|consen 79 SS---VSKAKAAKLVRSLVDMFLK------------------ID-DGTGDQIELCTECIEWAKREKRTFLRQ-----SLE 131 (411)
T ss_pred HH---hhhHHHHHHHHHHHHHHcc------------------CC-CCcchHHHHHHHHHHHHHHHhHHHHHH-----HHH
Confidence 22 0111111222222221110 01 111222222211100 000110 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhC----CCC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC----CCCCCChHHH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELL----PGI--INRKERYHILALCYYGAGEDLVALNLLRTLLSG----SEDPKCLPAL 234 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al----~~~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~~~P~~~~a~ 234 (446)
..+..+|...++|.+|+......+ +.+ +.-.+.+..=..+|+...+...|...+-.|-.- -..|.--...
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 356778888889988886543332 222 333455555677778888888888777665410 1223222222
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc---chhhhHHHHHhhchhHhhhhhhhchHHHHHHHH--HHHHHHHHHH
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGC---DQMESTANCLLGISLSAQSKVAITDFDRATRQA--KALQALVSAA 309 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~---~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~--eAl~~~~~al 309 (446)
=...|+++-...++.-|-.||-+|++-...-+ ....+.-|+.|.-+- .+..+ .++-.-+.++
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIM-------------ln~~ddv~~lls~K~~l 278 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIM-------------LNLPDDVAALLSAKLAL 278 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHH-------------hcCHHHHHHHHhhHHHH
Confidence 23456666666889999999999998654321 112222233332221 22222 3455557778
Q ss_pred HhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhcCC
Q 013299 310 RSTNMRDLSILYRLSLEYAE--QRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~--~~~~~~A~~~~~~al~l~P~ 349 (446)
+.+-.+.+++-..+.++.. ..+++.|+..|+.=+.-||-
T Consensus 279 -~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 279 -KYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred -hccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 7888888999888888765 45899999999988876653
No 467
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.63 E-value=2.2e+02 Score=30.05 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
...+.+....+.-+ .-........+.-+..+-+.+..+.|-.+|++.+..+|++ ++...+.-+...|-..+|...+
T Consensus 22 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 22 KKLAQAVALIDSEL-PTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE---ARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred hhHHHHHHHHHHhC-CccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc---hHHHHHHHHHhhhhhhHHHHHH
Confidence 34555555555555 4444556666777888888888888999999988888873 5666777788888888888777
Q ss_pred H
Q 013299 376 N 376 (446)
Q Consensus 376 ~ 376 (446)
.
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 6
No 468
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.31 E-value=54 Score=24.30 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~ 42 (446)
-.+..+|......|+|++|...|...|+.+-.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44567888899999999999999999987543
No 469
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=37.85 E-value=4.4e+02 Score=26.56 Aligned_cols=109 Identities=15% Similarity=-0.048 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCCCC----HHHHHHHHHHHHHccC
Q 013299 297 RQAKALQALVSAAR---STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EGGSN----LKGWLLMARILSAQKR 367 (446)
Q Consensus 297 ~~~eAl~~~~~al~---~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~----~~~~~~la~~~~~~g~ 367 (446)
.++.|...|.++-. ...+.-..+....+.++...+.+.+|...+-+.... +.+-. +..+...|.++
T Consensus 277 ~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~----- 351 (414)
T PF12739_consen 277 YLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY----- 351 (414)
T ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-----
Confidence 46778888887420 112222345556666777788887777766665554 22210 12233333333
Q ss_pred HHHHHHHHHHHHhh-cCCCC-----cHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 368 YEDAETILNAALDQ-TGKWE-----QGELLRTK-AKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 368 ~~eA~~~~~~al~~-~p~~~-----~~~~~~~~-a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+.. .|... ..-.|..+ |.-+.+.|+...|+.+|.+++..+.
T Consensus 352 ---------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 ---------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ---------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 11222 11001 22334433 6788999999999999999999875
No 470
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.70 E-value=3e+02 Score=26.35 Aligned_cols=30 Identities=3% Similarity=-0.078 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
+++|.++|..|...++-+.+.+++.+.++.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 367888888888888888888887777654
No 471
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=37.19 E-value=79 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=19.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.|.-....|++++|+..|..+++.+-.
T Consensus 12 ~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 12 LALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333344458899999999999988755
No 472
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=37.18 E-value=1.7e+02 Score=23.16 Aligned_cols=29 Identities=14% Similarity=-0.048 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
.....-|.+-...||+..|++...++-+.
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34445566666667777777776666544
No 473
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.55 E-value=1.4e+02 Score=30.16 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=18.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.+.|.-+...|++.+|+..|+..|
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL 231 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSIL 231 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345666777899999999999888
No 474
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=34.51 E-value=1.5e+02 Score=29.49 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchH-HHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013299 248 AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDF-DRATRQAKALQALVSAARSTNMRDLSIL 320 (446)
Q Consensus 248 ~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~-~~~~~~~eAl~~~~~al~~~~P~~~~a~ 320 (446)
+..|+.|+++|.....| ..|..++.++...|+.....+ ++.+.|.+|...+++|-+..+-...+++
T Consensus 334 ~~~Al~yL~kA~d~ddP-------etWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diL 400 (404)
T PF12753_consen 334 IKKALEYLKKAQDEDDP-------ETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDIL 400 (404)
T ss_dssp HHHHHHHHHHHHHS--T-------THHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred HHHHHHHHHHhhccCCh-------hHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 45777788877763222 344454444444444322222 3556789999999988733333333333
No 475
>PF13934 ELYS: Nuclear pore complex assembly
Probab=34.22 E-value=3.7e+02 Score=24.59 Aligned_cols=82 Identities=13% Similarity=-0.077 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
-.|.-+...+++++|+..+-.. .+.|+. ......++...|+.+-|+.+++.. .|.....+.......+ ...
T Consensus 83 ~~g~W~LD~~~~~~A~~~L~~p-s~~~~~----~~~Il~~L~~~~~~~lAL~y~~~~---~p~l~s~~~~~~~~~~-La~ 153 (226)
T PF13934_consen 83 IQGFWLLDHGDFEEALELLSHP-SLIPWF----PDKILQALLRRGDPKLALRYLRAV---GPPLSSPEALTLYFVA-LAN 153 (226)
T ss_pred HHHHHHhChHhHHHHHHHhCCC-CCCccc----HHHHHHHHHHCCChhHHHHHHHhc---CCCCCCHHHHHHHHHH-HHc
Confidence 3344444455555555555322 122222 112333444455666555555432 1211233333222222 444
Q ss_pred CCHHHHHHHHH
Q 013299 402 GQLKGAVETYT 412 (446)
Q Consensus 402 g~~~eA~~~~~ 412 (446)
|.+.||+..-|
T Consensus 154 ~~v~EAf~~~R 164 (226)
T PF13934_consen 154 GLVTEAFSFQR 164 (226)
T ss_pred CCHHHHHHHHH
Confidence 55555555443
No 476
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.95 E-value=1.8e+02 Score=29.15 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCC
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFP 49 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~ 49 (446)
+.+.-++|+|+..+|.+++|+..|++.|.....-+|.+.+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k 61 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEK 61 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCccccc
Confidence 4556679999999999999999999999887665555544
No 477
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.55 E-value=54 Score=35.29 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQ---------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~ 363 (446)
+.|+.++|+...-.++ +.+ |-.|+.+..-|.+|..+ +..+.|++.|++|.+..|.. .+=.+++.++.
T Consensus 255 r~GDRakAL~~~l~lv-e~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~--~sGIN~atLL~ 331 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLV-EKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE--YSGINLATLLR 331 (1226)
T ss_pred CCccHHHHHHHHHHHH-HhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh--hccccHHHHHH
Confidence 4688999999999999 654 77888888899998654 67788999999999999984 55567788877
Q ss_pred HccC-HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 364 AQKR-YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 364 ~~g~-~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
..|+ |+...+.=. +-..++.++-+.|..+.-.++|.
T Consensus 332 aaG~~Fens~Elq~-------------IgmkLn~LlgrKG~leklq~YWd 368 (1226)
T KOG4279|consen 332 AAGEHFENSLELQQ-------------IGMKLNSLLGRKGALEKLQEYWD 368 (1226)
T ss_pred HhhhhccchHHHHH-------------HHHHHHHHhhccchHHHHHHHHh
Confidence 7665 332222211 22234455556666666555554
No 478
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=31.80 E-value=8e+02 Score=27.76 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 333 LNAAHYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 333 ~~~A~~~~~~al~-l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
.+.-.+.|.+.+. ++-+++ .+|..-..-...+|+|..|++++.++++.+.....-+.+..++.++..+|
T Consensus 1212 ld~~~e~y~el~kw~d~~ds-K~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDS-KVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCc-hheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3344455555554 344553 66666566667889999999999999985431124455666777777766
No 479
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.55 E-value=80 Score=30.98 Aligned_cols=27 Identities=11% Similarity=-0.041 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
+...|.-.+.+++++.|...|..|..+
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l 70 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATEL 70 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHH
Confidence 444455555555555555555555544
No 480
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=31.00 E-value=2.6e+02 Score=23.11 Aligned_cols=64 Identities=13% Similarity=-0.044 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--------------CHHHHHHHHHHHHHccCHHHHHHHHHHH----Hhh
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--------------NLKGWLLMARILSAQKRYEDAETILNAA----LDQ 381 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--------------~~~~~~~la~~~~~~g~~~eA~~~~~~a----l~~ 381 (446)
+..+|....+.+++-.++-+|++|+.+..+- .+..-.+||.....+|+.+=.+.+++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567777778888888888888888764321 0234557899999999999889988655 445
Q ss_pred cC
Q 013299 382 TG 383 (446)
Q Consensus 382 ~p 383 (446)
-|
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 55
No 481
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.96 E-value=3.6e+02 Score=27.12 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-------CcH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-------EQG 388 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~ 388 (446)
.++..+|.-|...|+++.|++.|-++-.--.. +....|.++-.|-...|+|..-..+..+|.+- |.- -.+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chhhhhHHHhcCc
Confidence 35567888888888888888888885332221 21244666666667778888877777777643 200 012
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
.+.-.-|.+.+.++++..|..++-
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL 253 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFL 253 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344555566667777776654
No 482
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=30.85 E-value=1.2e+02 Score=19.81 Aligned_cols=30 Identities=13% Similarity=-0.085 Sum_probs=16.9
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKG 406 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~e 406 (446)
+.+||-.+| ++-..+...|.-+.+.|+...
T Consensus 5 ll~AI~~~P--~ddt~RLvYADWL~e~gdp~r 34 (42)
T TIGR02996 5 LLRAILAHP--DDDTPRLVYADWLDEHGDPAR 34 (42)
T ss_pred HHHHHHhCC--CCcchHHHHHHHHHHcCCHHH
Confidence 445555566 555555556666666666543
No 483
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=29.65 E-value=97 Score=33.49 Aligned_cols=111 Identities=14% Similarity=0.001 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHH--ccCHHHHHHH
Q 013299 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSA--QKRYEDAETI 374 (446)
Q Consensus 300 eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~~la~~~~~--~g~~~eA~~~ 374 (446)
++...+.+++ +..-. |..+.+.+++.+|...|..++.+-|.+ .+....+.+.+++. .|+|.+++.-
T Consensus 45 di~v~l~ra~-~~~~E--------~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E 115 (748)
T KOG4151|consen 45 DIEVFLSRAL-ELKEE--------GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPE 115 (748)
T ss_pred chHHHHHHHH-HHHhh--------hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCc
Confidence 4555555555 43322 446667778888888888888888832 12445566666544 5788888888
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.+-++...| ....+++-++..|...++++=|++..+-.....|..
T Consensus 116 ~~la~~~~p--~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 116 CELALESQP--RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred hhhhhhccc--hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 888888888 777888888888888888888888877777776655
No 484
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.17 E-value=3.1e+02 Score=22.10 Aligned_cols=78 Identities=14% Similarity=-0.082 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
..+++|....+=.-..+-...-+-.-....+.+.|+|++| +..... .-.|+-. .++. +|-.+.|..+++..+
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~-p~~A---L~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLE-PWAA---LCAWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGH-HHHH---HHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHH-HHHH---HHHHhhccHHHHHHH
Confidence 3445555444332222222223344457788999999999 444442 2345432 3332 344557888888888
Q ss_pred HHHHHH
Q 013299 255 ASRALE 260 (446)
Q Consensus 255 ~~~al~ 260 (446)
+.|.-.
T Consensus 92 l~rla~ 97 (116)
T PF09477_consen 92 LTRLAS 97 (116)
T ss_dssp HHHHCT
T ss_pred HHHHHh
Confidence 776543
No 485
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=28.41 E-value=8.2e+02 Score=27.12 Aligned_cols=32 Identities=13% Similarity=-0.018 Sum_probs=24.9
Q ss_pred HHHHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 61 TLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 61 ~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
.........|.-....|.+++||..|..+=+.
T Consensus 620 ~~~~i~~~vA~~a~~~G~~~~sI~LY~lag~y 651 (835)
T KOG2168|consen 620 DLQKIILEVASEADEDGLFEDAILLYHLAGDY 651 (835)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Confidence 45556666777788999999999999987543
No 486
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=28.20 E-value=5.8e+02 Score=25.00 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhcC
Q 013299 161 PSILDHLSFAFSIAG 175 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~ 175 (446)
..+++++|.++.+.+
T Consensus 119 a~vlfNiaal~s~la 133 (346)
T cd09240 119 VCVLFNIAALQSQIA 133 (346)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777766544
No 487
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=27.46 E-value=6.8e+02 Score=25.56 Aligned_cols=89 Identities=13% Similarity=-0.022 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
..+.+|-.+|.+.|++..|++.-...+--+|++. ....++-.-....|.-++-+ ..+.+ .....+|.++.-
T Consensus 134 ~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde-~ik~~ldyYq~~l~~s~d~l------~DlE~--~~~~~~Fir~v~ 204 (471)
T KOG4459|consen 134 LPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDE-DIKQNLDYYQTMLGVSEDEL------TDLER--REHEQWFIRGVR 204 (471)
T ss_pred hHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHH-HHHHHHHHHHhccCCCcccc------ccccc--chHHHHHHHHhh
Confidence 3466778888899999999999888888899983 66555544333333322211 12223 344667777777
Q ss_pred HHHhCCHHHHHHHHHHHH
Q 013299 398 QLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l 415 (446)
+...++++..+.....+|
T Consensus 205 ~y~~~d~~~~v~~ve~AL 222 (471)
T KOG4459|consen 205 LYSGEDPRQCVPEVELAL 222 (471)
T ss_pred hccccCchhcchhHHHHH
Confidence 777777766655444443
No 488
>PF13934 ELYS: Nuclear pore complex assembly
Probab=27.10 E-value=2.2e+02 Score=26.08 Aligned_cols=87 Identities=16% Similarity=0.029 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 318 SILYRLSLEYAEQRKLN-----AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~-----~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
..+...+.+|+-.-|++ .+...|-.+..+.|.. .....|.-+...+++++|+..+-.. ...| +.+ -
T Consensus 42 ~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~---~~~~~g~W~LD~~~~~~A~~~L~~p-s~~~--~~~---~ 112 (226)
T PF13934_consen 42 SLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKY---IKFIQGFWLLDHGDFEEALELLSHP-SLIP--WFP---D 112 (226)
T ss_pred CHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHH---HHHHHHHHHhChHhHHHHHHHhCCC-CCCc--ccH---H
Confidence 33455555555544444 5688888888887653 3444577777889999999888332 2223 222 2
Q ss_pred HHHHHHHHhCCHHHHHHHHHH
Q 013299 393 TKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~ 413 (446)
....++...|+.+-|+.+++.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHh
Confidence 345566668999999988875
No 489
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=26.98 E-value=83 Score=26.11 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 193 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
++.++.--+=..++..-+.+.|..+|++.+ ...|++..+++.+..
T Consensus 74 eY~EaLRDfq~~~iaKle~e~Ae~vY~el~--~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 74 EYSEALRDFQCSWIAKLEPENAEQVYEELL--EAHPDHLPAHLAMIQ 118 (139)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH--HH-TT-THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HHCcchHHHHHHHHH
No 490
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=8e+02 Score=27.53 Aligned_cols=25 Identities=4% Similarity=0.278 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCC
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPG 190 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~ 190 (446)
..|.-+...|.+.+|+++|+.+|-.
T Consensus 996 ~~gy~ltt~gKf~eAie~Frsii~~ 1020 (1202)
T KOG0292|consen 996 QKGYKLTTEGKFGEAIEKFRSIIYS 1020 (1202)
T ss_pred HHHHhhhccCcHHHHHHHHHHHHhh
Confidence 4456666789999999999988644
No 491
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.65 E-value=6.3e+02 Score=24.90 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 013299 166 HLSFAFSIAGDLSSLATQI 184 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~ 184 (446)
.-|.++.-.++|.+....|
T Consensus 63 ~~Gl~a~~~~dya~S~~~l 81 (449)
T COG3014 63 QNGLSALYARDYATSLGVL 81 (449)
T ss_pred hhhHHHHHhhhHHHhhhHH
Confidence 4477777777776655444
No 492
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.65 E-value=2.5e+02 Score=22.16 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=29.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 403 (446)
..-|.+-...|++..|.+...++-+..+ .....+..-+.+-..+||
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~--~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSD--NPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCC
Confidence 3345666667888888888888866544 334444444566666654
No 493
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=26.30 E-value=3.9e+02 Score=27.06 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHH
Q 013299 5 AISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIV 40 (446)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~ 40 (446)
++.-+.+ ....|..++..|||++|+..|+.+|...
T Consensus 200 ~l~~L~~-~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i 234 (422)
T PF06957_consen 200 SLSSLEE-RLKEGYKLFTAGKFEEAIEIFRSILHSI 234 (422)
T ss_dssp -HHHHHH-HHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4444443 6688999999999999999999999875
No 494
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=25.94 E-value=1.8e+02 Score=23.85 Aligned_cols=29 Identities=17% Similarity=-0.022 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
..+|..+...|++++|..+|-+|+..-|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 35666666667777777777777776665
No 495
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.87 E-value=3.3e+02 Score=26.34 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 013299 248 AEEGATFASRALEC 261 (446)
Q Consensus 248 ~~eA~~~~~~al~~ 261 (446)
...||.+.++|++.
T Consensus 7 l~kaI~lv~kA~~e 20 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDE 20 (439)
T ss_pred HHHHHHHHHHHhhh
Confidence 45788888888773
No 496
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=6e+02 Score=24.30 Aligned_cols=178 Identities=11% Similarity=-0.116 Sum_probs=110.0
Q ss_pred HHhhcCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC--CChHHHHHHHHHH
Q 013299 152 VALKRIEWDPSILDHLSFAFSI--------AGDLSSLATQIEELLPGIINRKERYHILALCYYGA--GEDLVALNLLRTL 221 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~a 221 (446)
..+..+|..-.+|+..-.++.. ..-.+.=+..++.+++-+|.+-..|...-.++-.. .++..-+...++.
T Consensus 57 elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkkl 136 (328)
T COG5536 57 ELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKL 136 (328)
T ss_pred HHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHH
Confidence 3456667777777665555543 11234556788999999999999999988887766 6788888899999
Q ss_pred hcCCCCCCChHHHHHHHHHH--hcCCC---CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhch---hHhhhhhhhchHH
Q 013299 222 LSGSEDPKCLPALLIASKIC--GEYPD---LAEEGATFASRALECLGDGCDQMESTANCLLGIS---LSAQSKVAITDFD 293 (446)
Q Consensus 222 l~~~~~P~~~~a~~~~~~~~--~~~~~---~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~---~~~~~~~~~~~~~ 293 (446)
+ ..||.|...+.+.--++ .+... ....-.++-.-+|....-+ ..||.+.-.. ....|. ..
T Consensus 137 l--d~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N-----~SaW~~r~~~~~~~~~~~~-----vi 204 (328)
T COG5536 137 L--DSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYN-----NSAWHHRYIWIERRFNRGD-----VI 204 (328)
T ss_pred h--cccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCC-----hHHHHHHHHHHHHHHhhcc-----cc
Confidence 9 89999987664321111 01111 2233355555555532222 3455444221 111111 11
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKM 342 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~ 342 (446)
...-+++-++..-.++ -.+|+|..+|..+-.+... .-.+++-++.+.+
T Consensus 205 sqk~l~~eL~~i~~~i-f~~p~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k 256 (328)
T COG5536 205 SQKYLEKELEYIFDKI-FTDPDNQSVWGYLRGVSSEFATDIVMIGEKVEDLGK 256 (328)
T ss_pred hHHHHHHHHHHHHhhh-hcCccccchhhHHHHHhccchHHHHHHHHHHHHHHh
Confidence 2234778888888999 8999999999877555322 3356666666643
No 497
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=25.40 E-value=1.1e+02 Score=30.51 Aligned_cols=32 Identities=19% Similarity=0.070 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR 331 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~ 331 (446)
...+|+.++++|. . -++|+.|.++|-++...|
T Consensus 333 l~~~Al~yL~kA~-d--~ddPetWv~vAEa~I~LG 364 (404)
T PF12753_consen 333 LIKKALEYLKKAQ-D--EDDPETWVDVAEAMIDLG 364 (404)
T ss_dssp HHHHHHHHHHHHH-H--S--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-c--cCChhHHHHHHHHHhhhh
Confidence 3445555555544 2 444444544444444433
No 498
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.17 E-value=1.5e+02 Score=20.84 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
+|..-+...-.-+.+.|++++|.+++++...
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444455556677777777777766543
No 499
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=24.70 E-value=9.8e+02 Score=26.50 Aligned_cols=88 Identities=14% Similarity=-0.067 Sum_probs=67.7
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH--HHHHhcCCCCHH
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA--SKICGEYPDLAE 249 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~--~~~~~~~~~~~~ 249 (446)
...+..++-+..++.-+.+++-+...+..|-.+++..|++++-...-++.- .+.|-.+..|+.- ..+.....+...
T Consensus 90 s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~--~~~pl~~~lWl~Wl~d~~~mt~s~~~~ 167 (881)
T KOG0128|consen 90 SNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMS--EIAPLPPHLWLEWLKDELSMTQSEERK 167 (881)
T ss_pred cccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHH--HhcCCChHHHHHHHHHHHhhccCcchh
Confidence 344555667788888999999999999999999999999998777777777 7888888876531 122333446778
Q ss_pred HHHHHHHHHHHH
Q 013299 250 EGATFASRALEC 261 (446)
Q Consensus 250 eA~~~~~~al~~ 261 (446)
+....|++++..
T Consensus 168 ~v~~~~ekal~d 179 (881)
T KOG0128|consen 168 EVEELFEKALGD 179 (881)
T ss_pred HHHHHHHHHhcc
Confidence 899999999873
No 500
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=24.55 E-value=1.2e+02 Score=18.79 Aligned_cols=14 Identities=0% Similarity=0.116 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHcC
Q 013299 318 SILYRLSLEYAEQR 331 (446)
Q Consensus 318 ~a~~~lg~~~~~~~ 331 (446)
++.|++|+++...+
T Consensus 2 qt~FnyAw~Lv~S~ 15 (35)
T PF14852_consen 2 QTQFNYAWGLVKSN 15 (35)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred cchhHHHHHHhcCC
Confidence 34455555555443
Done!