Query 013299
Match_columns 446
No_of_seqs 277 out of 2102
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 07:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-39 1.1E-43 320.1 36.9 351 11-443 34-384 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 9.8E-39 3.3E-43 316.7 31.8 334 15-420 4-337 (388)
3 2gw1_A Mitochondrial precursor 100.0 5.4E-35 1.8E-39 298.9 29.7 269 134-426 201-487 (514)
4 3fp2_A TPR repeat-containing p 100.0 4.8E-34 1.6E-38 294.0 36.4 367 7-425 22-499 (537)
5 3ieg_A DNAJ homolog subfamily 100.0 3.7E-33 1.3E-37 271.0 37.8 306 10-420 3-338 (359)
6 4g1t_A Interferon-induced prot 100.0 3.9E-34 1.3E-38 290.6 30.0 371 10-424 51-466 (472)
7 2y4t_A DNAJ homolog subfamily 100.0 4E-33 1.4E-37 280.9 36.2 342 9-422 25-415 (450)
8 2xpi_A Anaphase-promoting comp 100.0 4.4E-33 1.5E-37 291.0 36.4 364 9-443 199-595 (597)
9 2y4t_A DNAJ homolog subfamily 100.0 9.1E-32 3.1E-36 271.0 35.4 310 62-423 25-364 (450)
10 1fch_A Peroxisomal targeting s 100.0 7E-33 2.4E-37 271.4 23.2 310 65-421 27-363 (368)
11 2xpi_A Anaphase-promoting comp 100.0 1.3E-31 4.6E-36 279.8 33.9 373 10-441 84-525 (597)
12 3hym_B Cell division cycle pro 100.0 4.8E-31 1.7E-35 253.6 30.5 288 66-406 25-323 (330)
13 3hym_B Cell division cycle pro 100.0 1.1E-30 3.9E-35 251.0 27.4 273 131-441 31-313 (330)
14 3ieg_A DNAJ homolog subfamily 100.0 6.7E-29 2.3E-33 240.9 39.3 311 10-402 37-354 (359)
15 2gw1_A Mitochondrial precursor 100.0 1.5E-29 5E-34 258.5 35.3 238 128-394 243-489 (514)
16 2h6f_A Protein farnesyltransfe 100.0 1.8E-31 6.2E-36 264.8 19.2 248 154-425 90-356 (382)
17 4g1t_A Interferon-induced prot 100.0 7.7E-30 2.7E-34 258.9 30.6 372 16-443 15-441 (472)
18 1fch_A Peroxisomal targeting s 100.0 3.9E-30 1.3E-34 251.8 27.2 284 135-442 38-340 (368)
19 3cv0_A Peroxisome targeting si 100.0 7E-30 2.4E-34 245.2 24.8 267 130-423 29-321 (327)
20 3fp2_A TPR repeat-containing p 100.0 5.9E-29 2E-33 255.9 33.3 308 62-424 24-414 (537)
21 4eqf_A PEX5-related protein; a 100.0 8.5E-30 2.9E-34 250.0 24.8 247 160-424 64-317 (365)
22 2pl2_A Hypothetical conserved 100.0 1.2E-29 4.2E-34 231.9 23.3 211 158-415 2-212 (217)
23 4eqf_A PEX5-related protein; a 100.0 2.1E-30 7.2E-35 254.3 19.2 265 131-418 74-357 (365)
24 2h6f_A Protein farnesyltransfe 100.0 2.7E-29 9.3E-34 249.1 22.7 232 152-401 122-366 (382)
25 3cv0_A Peroxisome targeting si 100.0 4.2E-27 1.4E-31 225.7 27.4 239 160-421 20-273 (327)
26 3uq3_A Heat shock protein STI1 100.0 2.3E-27 7.8E-32 219.7 24.6 247 159-441 3-256 (258)
27 3u4t_A TPR repeat-containing p 100.0 1.1E-27 3.7E-32 224.6 22.3 242 160-425 2-258 (272)
28 3mkr_A Coatomer subunit epsilo 100.0 6.3E-26 2.2E-30 216.9 31.7 277 73-411 9-288 (291)
29 2xm6_A Protein corresponding t 99.9 7.8E-24 2.7E-28 216.8 42.3 346 10-419 39-434 (490)
30 3u4t_A TPR repeat-containing p 99.9 1.2E-26 4.1E-31 217.4 18.3 243 131-402 12-269 (272)
31 2xm6_A Protein corresponding t 99.9 1.4E-23 4.8E-28 214.9 42.1 310 64-417 40-396 (490)
32 3uq3_A Heat shock protein STI1 99.9 6E-26 2E-30 210.1 21.4 208 159-397 36-256 (258)
33 3mkr_A Coatomer subunit epsilo 99.9 2E-25 6.9E-30 213.4 25.1 257 135-425 12-272 (291)
34 2pl2_A Hypothetical conserved 99.9 5.6E-26 1.9E-30 207.5 20.0 169 154-378 32-211 (217)
35 2ooe_A Cleavage stimulation fa 99.9 6.5E-23 2.2E-27 212.1 43.0 379 10-445 13-515 (530)
36 3sf4_A G-protein-signaling mod 99.9 1.8E-26 6E-31 228.2 15.5 314 10-411 9-370 (406)
37 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.5E-25 8.6E-30 208.3 19.6 250 130-411 13-269 (275)
38 2q7f_A YRRB protein; TPR, prot 99.9 4.1E-25 1.4E-29 203.0 19.9 221 159-402 21-241 (243)
39 3vtx_A MAMA; tetratricopeptide 99.9 5.9E-25 2E-29 194.3 20.1 171 158-383 2-172 (184)
40 4abn_A Tetratricopeptide repea 99.9 5.9E-25 2E-29 224.6 22.7 223 138-414 84-318 (474)
41 3sf4_A G-protein-signaling mod 99.9 1.9E-25 6.4E-30 220.8 18.4 283 64-421 10-340 (406)
42 4a1s_A PINS, partner of inscut 99.9 7.8E-26 2.7E-30 225.0 15.0 285 63-422 48-377 (411)
43 1ouv_A Conserved hypothetical 99.9 1.6E-23 5.6E-28 197.1 28.2 235 157-421 2-255 (273)
44 2ond_A Cleavage stimulation fa 99.9 1.2E-23 4.2E-28 202.3 27.6 243 178-446 33-294 (308)
45 3vtx_A MAMA; tetratricopeptide 99.9 4.7E-24 1.6E-28 188.5 22.6 173 193-422 3-175 (184)
46 2vq2_A PILW, putative fimbrial 99.9 1.1E-23 3.8E-28 190.6 24.6 218 156-394 3-222 (225)
47 3ro2_A PINS homolog, G-protein 99.9 7.3E-25 2.5E-29 209.8 17.4 281 65-420 7-335 (338)
48 2q7f_A YRRB protein; TPR, prot 99.9 5.9E-24 2E-28 195.2 22.2 218 194-444 22-239 (243)
49 2ho1_A Type 4 fimbrial biogene 99.9 8.7E-24 3E-28 195.8 22.1 216 156-392 31-247 (252)
50 2ho1_A Type 4 fimbrial biogene 99.9 2.1E-23 7.3E-28 193.1 24.2 212 189-423 30-244 (252)
51 4gyw_A UDP-N-acetylglucosamine 99.9 4.8E-24 1.6E-28 227.3 21.2 176 191-423 5-180 (723)
52 3ro2_A PINS homolog, G-protein 99.9 2.5E-24 8.5E-29 206.0 16.7 286 10-383 5-334 (338)
53 4gyw_A UDP-N-acetylglucosamine 99.9 3.6E-24 1.2E-28 228.2 17.1 173 156-383 4-176 (723)
54 4i17_A Hypothetical protein; T 99.9 3.4E-23 1.2E-27 189.5 20.0 216 158-398 4-224 (228)
55 2vq2_A PILW, putative fimbrial 99.9 2.4E-22 8.2E-27 181.7 25.3 213 190-423 3-217 (225)
56 4a1s_A PINS, partner of inscut 99.9 1.1E-23 3.8E-28 209.4 17.9 275 159-442 46-353 (411)
57 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.9E-23 9.9E-28 194.2 19.1 231 170-423 14-250 (275)
58 2ond_A Cleavage stimulation fa 99.9 2.5E-22 8.5E-27 193.1 24.3 224 139-388 33-275 (308)
59 1ouv_A Conserved hypothetical 99.9 1.2E-21 4E-26 184.3 27.9 206 158-391 35-259 (273)
60 4abn_A Tetratricopeptide repea 99.9 4.3E-22 1.5E-26 203.4 25.5 226 75-378 80-318 (474)
61 2ooe_A Cleavage stimulation fa 99.9 1.5E-20 5.3E-25 194.2 36.5 314 65-425 15-428 (530)
62 3e4b_A ALGK; tetratricopeptide 99.9 2.3E-22 7.9E-27 204.1 21.9 227 158-418 138-388 (452)
63 3nf1_A KLC 1, kinesin light ch 99.9 3.4E-23 1.2E-27 196.9 13.2 247 157-420 23-310 (311)
64 2pzi_A Probable serine/threoni 99.9 7.7E-23 2.6E-27 218.0 16.2 191 155-370 388-586 (681)
65 3ulq_A Response regulator aspa 99.9 2.4E-22 8.2E-27 198.8 18.1 240 163-421 105-372 (383)
66 3qky_A Outer membrane assembly 99.9 1.5E-21 5.1E-26 182.6 22.0 208 155-407 9-251 (261)
67 4i17_A Hypothetical protein; T 99.9 7.8E-22 2.7E-26 180.5 19.5 202 191-422 3-214 (228)
68 3dra_A Protein farnesyltransfe 99.9 3E-21 1E-25 184.7 22.4 230 173-424 45-295 (306)
69 3e4b_A ALGK; tetratricopeptide 99.9 1.1E-21 3.7E-26 199.2 19.7 366 14-420 7-424 (452)
70 3q15_A PSP28, response regulat 99.9 9.8E-21 3.4E-25 187.0 20.9 242 163-423 103-371 (378)
71 3qky_A Outer membrane assembly 99.9 1.1E-20 3.9E-25 176.6 20.0 205 126-372 19-252 (261)
72 3dra_A Protein farnesyltransfe 99.9 5.1E-20 1.7E-24 176.2 24.8 238 138-397 49-302 (306)
73 3urz_A Uncharacterized protein 99.9 2.9E-21 1E-25 174.9 14.5 168 160-383 3-188 (208)
74 3as5_A MAMA; tetratricopeptide 99.9 1.4E-19 4.8E-24 158.0 22.7 170 195-421 8-177 (186)
75 3nf1_A KLC 1, kinesin light ch 99.9 1.7E-21 5.8E-26 185.1 11.0 265 9-349 26-310 (311)
76 3urz_A Uncharacterized protein 99.8 1.2E-20 4.2E-25 170.8 14.9 186 194-421 3-190 (208)
77 1hz4_A MALT regulatory protein 99.8 3.3E-19 1.1E-23 175.2 26.3 284 63-420 14-325 (373)
78 2r5s_A Uncharacterized protein 99.8 8.9E-21 3E-25 166.8 13.2 170 157-380 2-172 (176)
79 1qqe_A Vesicular transport pro 99.8 1.2E-20 4.1E-25 180.1 14.7 216 176-421 32-273 (292)
80 3as5_A MAMA; tetratricopeptide 99.8 1.9E-19 6.4E-24 157.2 21.1 169 160-383 7-175 (186)
81 4ga2_A E3 SUMO-protein ligase 99.8 4.6E-21 1.6E-25 164.5 10.0 140 244-403 9-149 (150)
82 3ulq_A Response regulator aspa 99.8 8.2E-20 2.8E-24 180.5 19.5 234 131-383 112-370 (383)
83 2pzi_A Probable serine/threoni 99.8 2.3E-20 7.7E-25 198.9 16.4 175 133-333 402-584 (681)
84 4ga2_A E3 SUMO-protein ligase 99.8 9.2E-21 3.1E-25 162.6 10.8 136 295-444 10-146 (150)
85 1qqe_A Vesicular transport pro 99.8 2.4E-20 8.1E-25 178.0 14.2 212 167-395 43-281 (292)
86 1hz4_A MALT regulatory protein 99.8 9.2E-19 3.2E-23 172.0 25.6 293 4-383 8-324 (373)
87 3dss_A Geranylgeranyl transfer 99.8 2.2E-18 7.4E-23 166.0 24.6 229 172-422 40-309 (331)
88 3edt_B KLC 2, kinesin light ch 99.8 4.5E-20 1.5E-24 172.4 12.4 208 192-418 40-282 (283)
89 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.5E-19 1.5E-23 162.3 17.9 206 160-421 3-217 (225)
90 3qou_A Protein YBBN; thioredox 99.8 3.1E-19 1.1E-23 169.9 17.2 171 155-380 111-283 (287)
91 3gyz_A Chaperone protein IPGC; 99.8 6.1E-20 2.1E-24 157.7 9.7 120 298-421 18-137 (151)
92 2yhc_A BAMD, UPF0169 lipoprote 99.8 8.2E-19 2.8E-23 160.6 17.6 193 194-439 3-198 (225)
93 3dss_A Geranylgeranyl transfer 99.8 1.5E-17 5E-22 160.2 26.8 238 139-395 47-316 (331)
94 3q7a_A Farnesyltransferase alp 99.8 1.6E-18 5.6E-23 167.6 20.1 248 158-419 51-334 (349)
95 2r5s_A Uncharacterized protein 99.8 2.3E-19 7.7E-24 157.8 11.9 171 191-417 2-173 (176)
96 3edt_B KLC 2, kinesin light ch 99.8 8.3E-20 2.8E-24 170.6 9.3 251 21-347 12-282 (283)
97 4gco_A Protein STI-1; structur 99.8 7.3E-19 2.5E-23 146.1 13.9 113 307-423 4-116 (126)
98 3qou_A Protein YBBN; thioredox 99.8 1.4E-18 4.8E-23 165.4 17.7 169 192-417 114-284 (287)
99 3q15_A PSP28, response regulat 99.8 1.2E-18 4.1E-23 172.0 17.9 253 12-347 103-366 (378)
100 4f3v_A ESX-1 secretion system 99.8 9.6E-20 3.3E-24 170.9 7.5 219 165-420 11-240 (282)
101 4gco_A Protein STI-1; structur 99.8 6E-18 2.1E-22 140.5 15.3 114 270-398 12-125 (126)
102 1xi4_A Clathrin heavy chain; a 99.8 4.8E-16 1.6E-20 169.9 34.1 307 15-425 990-1317(1630)
103 2vsy_A XCC0866; transferase, g 99.8 6.1E-18 2.1E-22 176.2 18.1 164 174-358 2-168 (568)
104 2vgx_A Chaperone SYCD; alterna 99.8 8.9E-18 3E-22 143.6 13.9 117 303-423 8-124 (148)
105 3rjv_A Putative SEL1 repeat pr 99.7 5.8E-17 2E-21 147.1 19.3 190 178-396 3-208 (212)
106 1p5q_A FKBP52, FK506-binding p 99.7 1.4E-19 4.8E-24 176.4 2.0 159 246-424 127-301 (336)
107 2c2l_A CHIP, carboxy terminus 99.7 1.5E-17 5E-22 157.9 15.6 199 158-382 1-200 (281)
108 3q7a_A Farnesyltransferase alp 99.7 2.5E-16 8.6E-21 152.3 23.9 239 138-397 70-346 (349)
109 1xi4_A Clathrin heavy chain; a 99.7 9.8E-16 3.4E-20 167.5 29.8 302 10-412 1105-1440(1630)
110 3gyz_A Chaperone protein IPGC; 99.7 1.2E-17 4.1E-22 143.3 11.8 103 271-388 36-138 (151)
111 2xcb_A PCRH, regulatory protei 99.7 1.4E-17 4.9E-22 140.9 12.1 118 303-424 5-122 (142)
112 2vsy_A XCC0866; transferase, g 99.7 5E-17 1.7E-21 169.3 18.5 156 246-421 3-161 (568)
113 2ifu_A Gamma-SNAP; membrane fu 99.7 6.1E-17 2.1E-21 155.4 17.7 228 135-409 4-253 (307)
114 1b89_A Protein (clathrin heavy 99.7 3.5E-18 1.2E-22 169.1 8.2 302 11-415 33-353 (449)
115 4f3v_A ESX-1 secretion system 99.7 1.3E-17 4.3E-22 156.5 11.1 198 135-358 19-247 (282)
116 2ifu_A Gamma-SNAP; membrane fu 99.7 1.6E-17 5.4E-22 159.5 10.5 207 174-421 4-227 (307)
117 2fo7_A Synthetic consensus TPR 99.7 1.1E-15 3.6E-20 125.6 17.5 134 272-420 2-135 (136)
118 2vgx_A Chaperone SYCD; alterna 99.7 5.3E-17 1.8E-21 138.7 9.8 116 182-351 8-123 (148)
119 2hr2_A Hypothetical protein; a 99.7 4.3E-16 1.5E-20 133.0 14.7 105 317-424 11-138 (159)
120 1p5q_A FKBP52, FK506-binding p 99.7 3.5E-18 1.2E-22 166.4 1.0 200 135-381 78-294 (336)
121 3upv_A Heat shock protein STI1 99.7 6.3E-16 2.2E-20 127.4 14.4 121 314-441 1-121 (126)
122 1a17_A Serine/threonine protei 99.7 2.4E-15 8.4E-20 129.0 17.8 135 271-420 13-149 (166)
123 2xcb_A PCRH, regulatory protei 99.7 2.9E-16 9.8E-21 132.8 11.6 125 182-361 5-129 (142)
124 3rjv_A Putative SEL1 repeat pr 99.7 1.5E-15 5.2E-20 137.6 17.0 180 212-418 3-198 (212)
125 1dce_A Protein (RAB geranylger 99.7 1E-15 3.4E-20 159.2 17.7 195 171-420 38-270 (567)
126 2e2e_A Formate-dependent nitri 99.7 4.4E-16 1.5E-20 136.3 12.6 123 295-421 23-148 (177)
127 2c2l_A CHIP, carboxy terminus 99.7 2.9E-16 9.9E-21 148.9 10.7 198 192-417 1-199 (281)
128 3upv_A Heat shock protein STI1 99.7 3.3E-15 1.1E-19 123.0 15.8 115 271-400 4-124 (126)
129 3sz7_A HSC70 cochaperone (SGT) 99.6 3.2E-15 1.1E-19 129.3 13.9 106 313-421 7-112 (164)
130 2fo7_A Synthetic consensus TPR 99.6 1.1E-14 3.8E-19 119.4 16.4 133 196-383 2-134 (136)
131 4gcn_A Protein STI-1; structur 99.6 1.6E-15 5.5E-20 125.9 11.0 104 315-419 6-114 (127)
132 2qfc_A PLCR protein; TPR, HTH, 99.6 2.4E-14 8.2E-19 136.1 20.6 182 192-421 72-270 (293)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5.3E-15 1.8E-19 132.9 14.5 132 272-421 7-154 (213)
134 4gcn_A Protein STI-1; structur 99.6 6.1E-15 2.1E-19 122.3 13.7 102 270-383 7-114 (127)
135 1zu2_A Mitochondrial import re 99.6 4.1E-15 1.4E-19 126.7 12.7 93 292-388 12-125 (158)
136 1hxi_A PEX5, peroxisome target 99.6 3.9E-15 1.3E-19 122.5 12.2 101 319-422 19-119 (121)
137 3q49_B STIP1 homology and U bo 99.6 1.5E-14 5.3E-19 120.3 16.0 108 311-421 3-110 (137)
138 1dce_A Protein (RAB geranylger 99.6 1.7E-14 5.8E-19 149.9 19.7 168 247-424 44-228 (567)
139 3sz7_A HSC70 cochaperone (SGT) 99.6 7.3E-15 2.5E-19 127.0 14.2 114 270-398 10-123 (164)
140 2fbn_A 70 kDa peptidylprolyl i 99.6 8.6E-16 3E-20 137.2 7.7 96 318-416 89-185 (198)
141 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.1E-14 7.3E-19 128.9 16.9 165 162-380 7-171 (213)
142 2lni_A Stress-induced-phosphop 99.6 1.4E-14 4.8E-19 119.2 14.1 120 269-403 14-133 (133)
143 1b89_A Protein (clathrin heavy 99.6 7.1E-16 2.4E-20 152.6 7.0 291 18-412 11-306 (449)
144 3u3w_A Transcriptional activat 99.6 3.8E-14 1.3E-18 134.7 18.6 176 197-421 77-270 (293)
145 2fbn_A 70 kDa peptidylprolyl i 99.6 1.2E-15 4.1E-20 136.3 7.7 181 160-379 3-184 (198)
146 2vyi_A SGTA protein; chaperone 99.6 3.4E-14 1.1E-18 116.2 15.5 120 270-404 11-130 (131)
147 1hxi_A PEX5, peroxisome target 99.6 9.1E-15 3.1E-19 120.2 11.9 101 273-388 19-119 (121)
148 2hr2_A Hypothetical protein; a 99.6 8.8E-15 3E-19 124.9 10.8 104 271-389 11-137 (159)
149 2e2e_A Formate-dependent nitri 99.6 1.7E-14 5.8E-19 126.1 12.9 126 244-389 22-150 (177)
150 2qfc_A PLCR protein; TPR, HTH, 99.6 9.5E-14 3.3E-18 131.9 19.1 177 158-382 72-267 (293)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2E-16 6.8E-21 160.6 0.1 165 175-379 248-413 (457)
152 1a17_A Serine/threonine protei 99.6 9.6E-14 3.3E-18 118.9 16.8 133 195-382 13-147 (166)
153 3rkv_A Putative peptidylprolyl 99.5 2.4E-14 8.3E-19 123.4 11.6 117 271-402 11-146 (162)
154 3q49_B STIP1 homology and U bo 99.5 5.1E-14 1.7E-18 117.1 12.9 116 271-401 9-129 (137)
155 2kck_A TPR repeat; tetratricop 99.5 1.1E-14 3.9E-19 115.8 8.2 106 312-420 1-109 (112)
156 1na0_A Designed protein CTPR3; 99.5 2.7E-13 9.3E-18 109.7 16.5 117 271-402 9-125 (125)
157 2lni_A Stress-induced-phosphop 99.5 8.2E-14 2.8E-18 114.6 13.5 108 311-421 10-117 (133)
158 3rkv_A Putative peptidylprolyl 99.5 7.3E-14 2.5E-18 120.4 13.7 104 316-422 10-131 (162)
159 3k9i_A BH0479 protein; putativ 99.5 5E-15 1.7E-19 120.7 5.8 96 295-394 3-101 (117)
160 1elw_A TPR1-domain of HOP; HOP 99.5 2.5E-13 8.6E-18 108.8 15.7 113 271-398 4-116 (118)
161 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 7.9E-15 2.7E-19 148.8 7.9 152 245-416 247-414 (457)
162 1wao_1 Serine/threonine protei 99.5 3.4E-15 1.2E-19 152.3 4.8 138 271-423 6-156 (477)
163 1elw_A TPR1-domain of HOP; HOP 99.5 1.9E-13 6.4E-18 109.6 13.5 114 316-442 3-116 (118)
164 1na0_A Designed protein CTPR3; 99.5 4.3E-13 1.5E-17 108.5 15.4 107 311-420 2-109 (125)
165 3u3w_A Transcriptional activat 99.5 4.1E-13 1.4E-17 127.5 17.3 169 166-381 80-266 (293)
166 2vyi_A SGTA protein; chaperone 99.5 1.6E-13 5.6E-18 112.0 12.6 108 311-421 6-113 (131)
167 2xev_A YBGF; tetratricopeptide 99.5 2.5E-13 8.5E-18 111.6 13.6 116 273-403 4-125 (129)
168 2dba_A Smooth muscle cell asso 99.5 3.3E-13 1.1E-17 113.2 14.5 108 311-421 22-132 (148)
169 2xev_A YBGF; tetratricopeptide 99.5 2.6E-13 8.8E-18 111.5 12.9 105 317-423 2-111 (129)
170 2if4_A ATFKBP42; FKBP-like, al 99.5 1.6E-14 5.5E-19 140.6 6.1 154 192-383 176-330 (338)
171 3gw4_A Uncharacterized protein 99.5 2.3E-13 7.9E-18 120.7 12.9 161 245-422 5-181 (203)
172 3mv2_B Coatomer subunit epsilo 99.5 7.6E-13 2.6E-17 125.6 16.6 191 180-392 85-291 (310)
173 2if4_A ATFKBP42; FKBP-like, al 99.5 3.2E-14 1.1E-18 138.4 7.3 137 271-422 179-333 (338)
174 1wao_1 Serine/threonine protei 99.5 3.4E-15 1.2E-19 152.2 -0.3 128 296-425 54-205 (477)
175 2dba_A Smooth muscle cell asso 99.5 7.3E-13 2.5E-17 111.0 13.7 115 271-400 28-145 (148)
176 4b4t_Q 26S proteasome regulato 99.5 1E-12 3.4E-17 131.1 16.9 207 161-381 4-245 (434)
177 3gw4_A Uncharacterized protein 99.4 9.5E-13 3.2E-17 116.7 13.8 163 172-383 3-178 (203)
178 1elr_A TPR2A-domain of HOP; HO 99.4 8.4E-13 2.9E-17 107.8 12.1 115 271-401 4-125 (131)
179 1ihg_A Cyclophilin 40; ppiase 99.4 6.5E-13 2.2E-17 130.8 13.3 125 271-410 223-363 (370)
180 1elr_A TPR2A-domain of HOP; HO 99.4 8E-13 2.7E-17 108.0 11.6 103 314-419 1-110 (131)
181 1zu2_A Mitochondrial import re 99.4 2.7E-13 9.1E-18 115.5 8.5 92 328-422 13-125 (158)
182 3ro3_A PINS homolog, G-protein 99.4 1.1E-12 3.7E-17 111.0 11.9 140 269-420 7-161 (164)
183 3k9i_A BH0479 protein; putativ 99.4 2.7E-13 9.2E-18 110.3 7.6 93 329-424 2-97 (117)
184 3mv2_B Coatomer subunit epsilo 99.4 4.8E-12 1.7E-16 120.0 17.1 198 151-382 90-306 (310)
185 2kat_A Uncharacterized protein 99.4 1.1E-12 3.9E-17 105.9 11.0 82 300-383 3-84 (115)
186 2kck_A TPR repeat; tetratricop 99.4 7.9E-13 2.7E-17 104.9 9.9 105 157-264 2-109 (112)
187 4e6h_A MRNA 3'-END-processing 99.4 1.6E-11 5.5E-16 129.5 21.1 228 178-421 326-574 (679)
188 2l6j_A TPR repeat-containing p 99.3 8.4E-13 2.9E-17 105.2 5.2 95 316-413 3-103 (111)
189 4e6h_A MRNA 3'-END-processing 99.3 4.7E-11 1.6E-15 126.0 18.8 217 150-384 332-573 (679)
190 3ma5_A Tetratricopeptide repea 99.3 8E-12 2.7E-16 98.6 9.6 71 312-383 2-72 (100)
191 1na3_A Designed protein CTPR2; 99.3 2.2E-11 7.5E-16 93.2 11.6 88 312-402 3-91 (91)
192 1ihg_A Cyclophilin 40; ppiase 99.3 1.7E-11 5.7E-16 120.7 12.6 104 317-423 223-342 (370)
193 4b4t_Q 26S proteasome regulato 99.3 1.6E-10 5.5E-15 115.0 19.3 227 12-262 6-246 (434)
194 2kat_A Uncharacterized protein 99.3 6E-11 2.1E-15 95.6 12.4 86 334-422 2-87 (115)
195 3ro3_A PINS homolog, G-protein 99.2 9.7E-11 3.3E-15 98.8 12.7 141 195-383 9-160 (164)
196 2l6j_A TPR repeat-containing p 99.2 5.8E-12 2E-16 100.2 4.0 95 271-378 4-104 (111)
197 2kc7_A BFR218_protein; tetratr 99.2 5.9E-11 2E-15 92.7 8.2 92 320-422 3-95 (99)
198 3ma5_A Tetratricopeptide repea 99.1 2.8E-10 9.5E-15 89.6 10.0 75 346-423 2-76 (100)
199 1na3_A Designed protein CTPR2; 99.1 6.1E-10 2.1E-14 85.0 11.2 83 271-366 9-91 (91)
200 3u64_A Protein TP_0956; tetrat 99.1 1.8E-09 6.1E-14 100.2 16.2 88 295-383 176-271 (301)
201 3ly7_A Transcriptional activat 99.1 2.2E-09 7.6E-14 103.6 16.5 120 296-420 213-342 (372)
202 2uy1_A Cleavage stimulation fa 99.1 5.6E-07 1.9E-11 91.7 34.3 357 10-419 14-415 (493)
203 3n71_A Histone lysine methyltr 99.1 4.7E-10 1.6E-14 114.1 11.1 146 10-222 309-462 (490)
204 2kc7_A BFR218_protein; tetratr 99.1 3.1E-10 1.1E-14 88.6 7.5 79 295-383 13-92 (99)
205 3ly7_A Transcriptional activat 99.0 6.7E-09 2.3E-13 100.3 16.8 157 187-391 186-347 (372)
206 1klx_A Cysteine rich protein B 99.0 7.6E-09 2.6E-13 86.6 14.8 111 296-418 9-127 (138)
207 2uy1_A Cleavage stimulation fa 99.0 3.1E-08 1.1E-12 101.0 22.0 122 298-425 195-357 (493)
208 3u64_A Protein TP_0956; tetrat 99.0 2.4E-09 8.2E-14 99.4 12.1 113 306-421 141-273 (301)
209 1klx_A Cysteine rich protein B 99.0 9.7E-09 3.3E-13 85.9 14.4 120 246-395 9-136 (138)
210 3n71_A Histone lysine methyltr 98.9 1.9E-09 6.5E-14 109.6 10.1 128 295-425 322-472 (490)
211 3bee_A Putative YFRE protein; 98.9 9.6E-09 3.3E-13 79.8 10.5 70 313-383 2-74 (93)
212 1pc2_A Mitochondria fission pr 98.9 1.8E-08 6.2E-13 84.7 12.4 100 296-399 12-116 (152)
213 3bee_A Putative YFRE protein; 98.8 1.9E-08 6.3E-13 78.1 9.1 74 157-232 2-78 (93)
214 1pc2_A Mitochondria fission pr 98.5 6.6E-07 2.3E-11 75.2 10.5 99 249-362 15-115 (152)
215 3qww_A SET and MYND domain-con 98.5 3.5E-07 1.2E-11 91.3 9.5 93 296-391 312-424 (433)
216 2v5f_A Prolyl 4-hydroxylase su 98.5 1.7E-06 5.9E-11 68.2 11.7 77 316-395 4-87 (104)
217 2v5f_A Prolyl 4-hydroxylase su 98.5 6.4E-07 2.2E-11 70.8 8.9 76 160-237 4-86 (104)
218 3qww_A SET and MYND domain-con 98.5 4.5E-07 1.5E-11 90.6 9.7 92 329-420 310-414 (433)
219 1nzn_A CGI-135 protein, fissio 98.3 5.5E-06 1.9E-10 67.1 11.8 101 296-399 15-119 (126)
220 3qwp_A SET and MYND domain-con 98.3 2.9E-06 1E-10 84.7 12.2 110 326-438 296-419 (429)
221 3qwp_A SET and MYND domain-con 98.3 1.3E-06 4.6E-11 87.2 8.4 87 294-381 299-400 (429)
222 4g26_A Pentatricopeptide repea 98.0 0.0011 3.8E-08 67.4 22.9 116 296-417 84-204 (501)
223 1y8m_A FIS1; mitochondria, unk 97.8 0.00077 2.6E-08 55.3 14.2 96 299-398 23-121 (144)
224 1nzn_A CGI-135 protein, fissio 97.8 0.00013 4.3E-09 59.1 9.2 81 154-236 28-113 (126)
225 3o48_A Mitochondria fission 1 97.8 0.00021 7E-09 58.0 10.4 83 316-400 39-124 (134)
226 4g26_A Pentatricopeptide repea 97.6 0.0041 1.4E-07 63.1 20.7 161 201-381 32-204 (501)
227 4h7y_A Dual specificity protei 97.6 0.00059 2E-08 56.5 10.5 107 311-420 7-126 (161)
228 4h7y_A Dual specificity protei 97.5 0.0013 4.6E-08 54.4 12.3 54 296-350 74-127 (161)
229 3ffl_A Anaphase-promoting comp 97.3 0.0017 5.9E-08 54.8 10.3 27 387-413 121-147 (167)
230 3o48_A Mitochondria fission 1 97.2 0.002 6.8E-08 52.2 9.5 82 271-362 40-122 (134)
231 3ffl_A Anaphase-promoting comp 97.1 0.0013 4.4E-08 55.6 7.6 100 295-398 33-165 (167)
232 1y8m_A FIS1; mitochondria, unk 97.1 0.0037 1.3E-07 51.3 9.8 82 271-362 39-121 (144)
233 4gns_B Protein CSD3, chitin bi 96.1 0.029 1E-06 59.2 11.4 113 298-414 265-397 (754)
234 4gns_B Protein CSD3, chitin bi 95.9 0.064 2.2E-06 56.6 13.0 58 320-378 340-397 (754)
235 2ff4_A Probable regulatory pro 95.6 0.23 7.8E-06 48.4 14.6 63 354-418 173-235 (388)
236 3txn_A 26S proteasome regulato 95.6 0.42 1.4E-05 46.4 16.3 94 322-415 104-208 (394)
237 3kae_A CDC27, possible protein 95.5 0.26 8.9E-06 41.5 12.4 101 312-418 28-144 (242)
238 1ya0_A SMG-7 transcript varian 95.2 0.13 4.5E-06 51.7 11.5 83 275-363 149-231 (497)
239 3txn_A 26S proteasome regulato 95.0 1.9 6.4E-05 41.9 18.7 181 62-264 18-213 (394)
240 1qsa_A Protein (soluble lytic 95.0 3 0.0001 43.0 21.3 116 296-416 228-347 (618)
241 1zbp_A Hypothetical protein VP 94.9 0.24 8.4E-06 45.1 11.4 119 295-423 10-135 (273)
242 2ff4_A Probable regulatory pro 93.8 0.98 3.4E-05 43.8 14.1 60 319-379 173-232 (388)
243 3kae_A CDC27, possible protein 93.7 1.4 4.7E-05 37.2 12.5 100 157-261 29-143 (242)
244 1ya0_A SMG-7 transcript varian 93.2 0.28 9.6E-06 49.3 9.1 76 163-240 154-229 (497)
245 3mkq_B Coatomer subunit alpha; 93.0 1.6 5.4E-05 37.2 12.2 97 294-412 17-113 (177)
246 3spa_A Mtrpol, DNA-directed RN 92.6 1.3 4.6E-05 48.0 13.6 91 320-415 130-228 (1134)
247 3mkq_A Coatomer beta'-subunit; 91.8 2.1 7.3E-05 45.1 14.4 48 170-222 661-708 (814)
248 4b4t_R RPN7, 26S proteasome re 91.3 0.67 2.3E-05 45.7 9.2 119 297-416 112-236 (429)
249 3mkq_A Coatomer beta'-subunit; 90.9 3.6 0.00012 43.3 15.1 74 295-375 665-746 (814)
250 1zbp_A Hypothetical protein VP 90.8 0.65 2.2E-05 42.3 7.6 57 326-383 6-62 (273)
251 2wpv_A GET4, UPF0363 protein Y 89.0 12 0.00042 34.8 15.2 82 297-380 115-216 (312)
252 2wpv_A GET4, UPF0363 protein Y 88.3 16 0.00056 34.0 20.6 83 178-261 117-217 (312)
253 3lpz_A GET4 (YOR164C homolog); 87.9 18 0.00061 34.0 26.6 82 178-260 119-215 (336)
254 3spa_A Mtrpol, DNA-directed RN 87.5 3.6 0.00012 44.8 11.5 95 164-260 130-229 (1134)
255 4b4t_S RPN3, 26S proteasome re 87.1 0.57 1.9E-05 46.9 4.9 142 240-383 144-301 (523)
256 4b4t_S RPN3, 26S proteasome re 86.4 0.48 1.7E-05 47.5 4.0 107 312-420 176-302 (523)
257 4fhn_B Nucleoporin NUP120; pro 85.0 3.3 0.00011 46.2 10.3 104 306-411 832-961 (1139)
258 3mkq_B Coatomer subunit alpha; 84.8 17 0.00058 30.7 15.8 56 159-222 6-61 (177)
259 4fhn_B Nucleoporin NUP120; pro 83.2 53 0.0018 36.4 19.1 59 318-376 900-962 (1139)
260 4b4t_P 26S proteasome regulato 79.6 38 0.0013 33.1 14.7 101 319-419 139-249 (445)
261 4b4t_R RPN7, 26S proteasome re 78.2 13 0.00045 36.3 10.8 66 195-261 131-197 (429)
262 4gq2_M Nucleoporin NUP120; bet 76.3 19 0.00066 39.1 12.4 97 166-268 815-933 (950)
263 4b4t_P 26S proteasome regulato 74.0 69 0.0023 31.2 15.7 99 163-261 139-247 (445)
264 1wy6_A Hypothetical protein ST 71.8 39 0.0013 27.4 10.6 81 133-222 72-152 (172)
265 2crb_A Nuclear receptor bindin 65.8 13 0.00044 27.6 5.3 33 390-422 17-49 (97)
266 4gq2_M Nucleoporin NUP120; bet 64.0 30 0.001 37.6 10.5 79 153-232 832-933 (950)
267 2dl1_A Spartin; SPG20, MIT, st 63.8 17 0.00057 28.4 6.0 35 10-44 22-56 (116)
268 2v6y_A AAA family ATPase, P60 62.5 16 0.00054 26.6 5.5 34 9-42 10-43 (83)
269 2w2u_A Hypothetical P60 katani 61.4 10 0.00036 27.6 4.3 33 10-42 19-51 (83)
270 2v6x_A Vacuolar protein sortin 57.8 15 0.00052 26.7 4.8 31 10-40 13-43 (85)
271 2cpt_A SKD1 protein, vacuolar 57.6 15 0.0005 28.8 4.9 34 9-42 17-50 (117)
272 1om2_A Protein (mitochondrial 55.9 21 0.00071 26.8 5.1 28 322-349 25-52 (95)
273 2crb_A Nuclear receptor bindin 55.7 16 0.00053 27.2 4.3 27 196-222 16-42 (97)
274 2w2u_A Hypothetical P60 katani 55.7 17 0.00058 26.5 4.6 30 392-421 23-52 (83)
275 4a5x_A MITD1, MIT domain-conta 55.2 19 0.00064 26.4 4.8 33 10-42 16-48 (86)
276 4ady_A RPN2, 26S proteasome re 54.7 1.6E+02 0.0054 31.9 13.6 177 206-405 385-577 (963)
277 3lpz_A GET4 (YOR164C homolog); 52.7 1.5E+02 0.0051 27.7 21.4 100 297-418 117-217 (336)
278 2v6y_A AAA family ATPase, P60 51.6 42 0.0014 24.2 6.3 28 394-421 17-44 (83)
279 3qnk_A Putative lipoprotein; a 51.1 34 0.0012 34.1 7.7 82 6-92 105-211 (517)
280 1wy6_A Hypothetical protein ST 50.2 59 0.002 26.4 7.2 52 328-380 102-153 (172)
281 1wfd_A Hypothetical protein 15 48.2 22 0.00076 26.4 4.3 33 10-42 15-47 (93)
282 3jq1_A SUSD superfamily protei 46.9 40 0.0014 33.3 7.3 79 7-92 107-209 (481)
283 4a5x_A MITD1, MIT domain-conta 46.5 36 0.0012 24.9 5.2 30 391-420 19-48 (86)
284 4ady_A RPN2, 26S proteasome re 45.7 1.3E+02 0.0046 32.4 11.4 50 171-222 384-438 (963)
285 3lxu_X Tripeptidyl-peptidase 2 45.3 3.1E+02 0.01 30.9 14.3 73 337-418 1269-1342(1354)
286 3t5x_A PCI domain-containing p 44.0 61 0.0021 27.9 7.2 33 318-350 15-47 (203)
287 3ax2_A Mitochondrial import re 43.8 54 0.0018 23.2 5.5 29 321-349 21-49 (73)
288 2v6x_A Vacuolar protein sortin 42.1 43 0.0015 24.2 5.0 28 393-420 18-45 (85)
289 1wfd_A Hypothetical protein 15 41.9 36 0.0012 25.3 4.6 28 393-420 20-47 (93)
290 2npm_A 14-3-3 domain containin 40.9 2E+02 0.0068 25.8 14.4 178 162-345 29-226 (260)
291 1qsa_A Protein (soluble lytic 40.9 3.1E+02 0.011 27.9 24.1 230 153-414 61-311 (618)
292 2br9_A 14-3-3E, 14-3-3 protein 40.7 1.9E+02 0.0064 25.4 14.8 177 162-345 6-201 (234)
293 3lxu_X Tripeptidyl-peptidase 2 40.6 2.1E+02 0.0071 32.2 12.1 66 299-366 1266-1331(1354)
294 3myv_A SUSD superfamily protei 40.3 71 0.0024 31.2 7.9 83 6-92 107-219 (454)
295 1o9d_A 14-3-3-like protein C; 39.3 2.1E+02 0.0072 25.6 14.4 179 161-345 8-206 (260)
296 3kez_A Putative sugar binding 39.1 76 0.0026 31.0 7.9 30 63-92 196-225 (461)
297 3ax2_A Mitochondrial import re 37.4 1.1E+02 0.0037 21.6 6.5 26 358-383 23-48 (73)
298 2cpt_A SKD1 protein, vacuolar 37.3 53 0.0018 25.5 5.1 21 399-419 29-49 (117)
299 3t5x_A PCI domain-containing p 36.9 68 0.0023 27.6 6.3 32 352-383 14-45 (203)
300 3i4g_A SUSD-like carbohydrate 34.7 1.1E+02 0.0036 30.7 8.3 82 6-92 119-227 (528)
301 3iqu_A 14-3-3 protein sigma; s 33.8 2.5E+02 0.0084 24.7 16.4 176 161-345 8-204 (236)
302 2cfu_A SDSA1; SDS-hydrolase, l 33.3 1.2E+02 0.004 31.4 8.5 48 355-404 452-499 (658)
303 3snx_A SUSD homolog, putative 33.0 1.3E+02 0.0045 29.3 8.5 30 63-92 191-220 (460)
304 2rpa_A Katanin P60 ATPase-cont 32.9 36 0.0012 24.4 3.2 24 322-345 17-40 (78)
305 2ijq_A Hypothetical protein; s 32.4 2.1E+02 0.0072 23.5 8.9 58 165-222 36-102 (161)
306 3ph0_C ASCG; type III secretio 31.9 1.1E+02 0.0039 20.3 5.5 40 366-408 20-60 (61)
307 3hdx_A SUSD homolog, SUSD supe 31.3 1E+02 0.0035 30.2 7.4 85 7-91 109-225 (478)
308 3mcx_A SUSD superfamily protei 29.8 90 0.0031 30.6 6.7 73 7-90 120-229 (477)
309 1om2_A Protein (mitochondrial 28.6 92 0.0031 23.2 4.9 27 357-383 25-51 (95)
310 3lvg_A Clathrin heavy chain 1; 28.5 1.4 4.8E-05 43.9 -6.5 188 11-238 55-270 (624)
311 3t5v_B Nuclear mRNA export pro 27.7 1.2E+02 0.0042 29.6 7.1 62 322-383 181-252 (455)
312 2cfu_A SDSA1; SDS-hydrolase, l 27.1 1.1E+02 0.0039 31.4 7.1 52 317-369 449-500 (658)
313 2rpa_A Katanin P60 ATPase-cont 25.2 67 0.0023 23.0 3.4 27 355-381 15-41 (78)
314 3uzd_A 14-3-3 protein gamma; s 24.3 3.7E+02 0.013 23.8 18.6 175 163-345 6-202 (248)
315 3re2_A Predicted protein; meni 24.2 2.3E+02 0.0079 26.8 7.7 44 336-380 276-324 (472)
316 4a1g_A Mitotic checkpoint seri 24.2 69 0.0024 26.2 3.8 45 63-111 101-145 (152)
317 3eab_A Spastin; spastin, MIT, 24.2 63 0.0022 23.8 3.2 35 10-44 16-53 (89)
318 2xze_A STAM-binding protein; h 24.1 1.5E+02 0.0053 23.8 6.0 47 3-50 33-79 (146)
319 2dl1_A Spartin; SPG20, MIT, st 23.4 97 0.0033 24.0 4.3 39 365-420 16-54 (116)
320 3ihv_A SUSD homolog; NP_813570 23.2 1.4E+02 0.0049 29.6 6.9 85 7-92 115-233 (535)
321 3ubw_A 14-3-3E, 14-3-3 protein 21.9 4.3E+02 0.015 23.6 17.6 181 160-345 30-227 (261)
322 4a1g_A Mitotic checkpoint seri 21.4 1.4E+02 0.0048 24.3 5.2 44 180-223 84-129 (152)
323 2ynq_A ESSB; membrane protein, 20.2 1E+02 0.0035 25.4 4.0 74 297-378 23-99 (161)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.3e-39 Score=320.14 Aligned_cols=351 Identities=17% Similarity=0.116 Sum_probs=291.0
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
.++...|.++...|++++|+..++++++. .|.. ..++..+|.++.+.|++++|+..|++++
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al 94 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL-----------AEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc-----------hHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555666666666666666666666654 2332 2456667777777777777777777777
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
+. +|++... ...++.. +...|++++|+..+ +.+++.+|+++.++..+|.+
T Consensus 95 ~~----~p~~~~~-~~~l~~~--------------------~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 95 RL----KPDFIDG-YINLAAA--------------------LVAAGDMEGAVQAY-----VSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp HH----CTTCHHH-HHHHHHH--------------------HHHHSCSSHHHHHH-----HHHHHHCTTCTHHHHHHHHH
T ss_pred Hc----CcchHHH-HHHHHHH--------------------HHHcCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHH
Confidence 76 4443221 2333333 33456788888876 55677889999999999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE 250 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e 250 (446)
+...|++++|++.|++++..+|+++.+|+++|.++...|++++|+..|++++ .++|+++.++..+|.++ ...|++++
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~-~~~~~~~~ 221 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--TLDPNFLDAYINLGNVL-KEARIFDR 221 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HTTTCTTH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCcHHHHHHHHHHH-HHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999 89999999988887664 45789999
Q ss_pred HHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 013299 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ 330 (446)
Q Consensus 251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~ 330 (446)
|+..++++++..|.+ ..++..+|.++... |++++|+..|++++ +++|+++.+++++|.++...
T Consensus 222 A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 222 AVAAYLRALSLSPNH-----AVVHGNLACVYYEQ-----------GLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHc
Confidence 999999999965443 56888899988664 57899999999999 99999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 331 ~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+..++++++.+| ++..+++.+|.++...|++++|+..
T Consensus 285 g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999 59999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCcchhhHHhhhhcccc
Q 013299 411 YTHLLAALQVQTKTFSSDKRFYKVYFMRKRVST 443 (446)
Q Consensus 411 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (446)
|++++++. |.+..+|++++.+..
T Consensus 362 ~~~a~~~~----------p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 362 YKEAIRIS----------PTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHTTC----------TTCHHHHHHHHHHHH
T ss_pred HHHHHhhC----------CCCHHHHHhHHHHHH
Confidence 99999875 667788888877653
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.8e-39 Score=316.72 Aligned_cols=334 Identities=17% Similarity=0.079 Sum_probs=299.5
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCC
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~ 94 (446)
..|..+...|++++|++.|.++++. .|++ ..++..+|.++.+.|++++|+..++++++.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~--------~p~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-- 62 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQ--------EPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-- 62 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 4688899999999999999999987 4553 246778889999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 013299 95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA 174 (446)
Q Consensus 95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~ 174 (446)
+|.+.. ....++.. +...|++++|+..+ +.++...|+++.++..+|.++...
T Consensus 63 --~p~~~~-~~~~lg~~--------------------~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 63 --NPLLAE-AYSNLGNV--------------------YKERGQLQEAIEHY-----RHALRLKPDFIDGYINLAAALVAA 114 (388)
T ss_dssp --CTTCHH-HHHHHHHH--------------------HHHHTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --CCCchH-HHHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHcCcchHHHHHHHHHHHHHc
Confidence 554432 23444443 33467899999986 556788899999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++ ..+|+++.++..+|.++ ...|++++|+.+
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~ 191 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI--ETQPNFAVAWSNLGCVF-NAQGEIWLAIHH 191 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 89999999998887664 557999999999
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 013299 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLN 334 (446)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~ 334 (446)
|+++++..|.. ..++..+|.++... +++++|+..|++++ .++|+++.+++++|.++..+|+++
T Consensus 192 ~~~al~~~p~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 192 FEKAVTLDPNF-----LDAYINLGNVLKEA-----------RIFDRAVAAYLRAL-SLSPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHHHCTTC-----HHHHHHHHHHHHTT-----------TCTTHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCCc-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCcCCHHHHHHHHHHHHHcCCHH
Confidence 99999965443 57899999998765 56899999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 335 ~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
+|+..|+++++++|++ ..+|.++|.++...|++++|+..++++++..| ++..++..+|.++...|++++|+..|+++
T Consensus 255 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 255 LAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999 49999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHHHhh
Q 013299 415 LAALQV 420 (446)
Q Consensus 415 l~l~~~ 420 (446)
+++.|+
T Consensus 332 l~~~p~ 337 (388)
T 1w3b_A 332 LEVFPE 337 (388)
T ss_dssp TTSCTT
T ss_pred HhcCCC
Confidence 988654
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-35 Score=298.88 Aligned_cols=269 Identities=11% Similarity=0.043 Sum_probs=239.7
Q ss_pred CCCcHHHHHHHHHHHHH--HHHhhcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 013299 134 PRNNIEEAILLLMILLR--KVALKRI-------EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (446)
Q Consensus 134 ~~~~~~eA~~~l~~~~~--~~~l~~~-------p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 204 (446)
..|++++|+..+..++. +..+... |.++.++..+|.++...|++++|+..|++++..+|+ +.+|+.+|.+
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~ 279 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALI 279 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHH
Confidence 47899999988733211 0001123 455779999999999999999999999999999999 9999999999
Q ss_pred HHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhh
Q 013299 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (446)
Q Consensus 205 ~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (446)
+...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+.+++++++..|.+ ..++..+|.++...
T Consensus 280 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKAL--KLDSNNSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPEN-----IFPYIQLACLAYRE 351 (514)
T ss_dssp HHTSSCCTTGGGHHHHHH--TTCTTCTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSC-----SHHHHHHHHHTTTT
T ss_pred HHHCCCHHHHHHHHHHHh--hcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHHc
Confidence 999999999999999999 8999999999888877655 789999999999999965443 46888999988765
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH------HHHHH
Q 013299 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK------GWLLM 358 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~------~~~~l 358 (446)
|++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|+++ . +|..+
T Consensus 352 -----------~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l 418 (514)
T 2gw1_A 352 -----------NKFDDCETLFSEAK-RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD-GIYVGIAPLVGK 418 (514)
T ss_dssp -----------TCHHHHHHHHHHHH-HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS-SCSSCSHHHHHH
T ss_pred -----------CCHHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHH
Confidence 56899999999999 99999999999999999999999999999999999999984 5 99999
Q ss_pred HHHHHH---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhcc
Q 013299 359 ARILSA---QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (446)
Q Consensus 359 a~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~ 426 (446)
|.++.. .|++++|+.+++++++.+| ++..+++.+|.++...|++++|+..|++++++.|++.+.+.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 999999 9999999999999999999 89999999999999999999999999999999987766543
No 4
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.8e-34 Score=293.98 Aligned_cols=367 Identities=10% Similarity=0.030 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHH
Q 013299 7 SLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSY 86 (446)
Q Consensus 7 ~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y 86 (446)
.-.+++++.+|.++...|++++|+..|+++++. .|.+ ..++..+|.+|...|++++|+..|
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~ 82 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNE-----------PVFYSNISACYISTGDLEKVIEFT 82 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCC-----------cHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346889999999999999999999999999987 4543 257778889999999999999999
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHHhhhcCC-----------CCCCccc------------------------------
Q 013299 87 RRALLPCWNLDAETTAKLQKEFAIFLLYCGGE-----------TCPPNLR------------------------------ 125 (446)
Q Consensus 87 ~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~-----------~~~~~~~------------------------------ 125 (446)
+++++. +|.+... ...++..+...+.. ..|....
T Consensus 83 ~~al~~----~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 157 (537)
T 3fp2_A 83 TKALEI----KPDHSKA-LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157 (537)
T ss_dssp HHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHhc----CCchHHH-HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999998 5544322 12222222211110 0000000
Q ss_pred ----------------------------------------cccCcccc--------CCCcHHHHHHHHHHHHHHHHhhcC
Q 013299 126 ----------------------------------------SQMGSSFV--------PRNNIEEAILLLMILLRKVALKRI 157 (446)
Q Consensus 126 ----------------------------------------~~~~~~~~--------~~~~~~eA~~~l~~~~~~~~l~~~ 157 (446)
..+...+. ..+++++|+..+ +.++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~-----~~~l~~~ 232 (537)
T 3fp2_A 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY-----HSLLSAN 232 (537)
T ss_dssp -CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH-----HHHHC--
T ss_pred ccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHC
Confidence 00000000 012556666654 5677888
Q ss_pred CCCHH-------HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 158 EWDPS-------ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 158 p~~~~-------~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
|++++ ++..+|.++...|++++|+..|++++..+|+ +.+|+.+|.++...|++++|+..|++++ ..+|++
T Consensus 233 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~ 309 (537)
T 3fp2_A 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV--DLNPEY 309 (537)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH--HHCTTC
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh--ccCCCC
Confidence 99876 5778889999999999999999999999999 9999999999999999999999999999 899999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
+.++..+|.++.. .|++++|+..++++++..|.+ ..++..+|.++... |++++|+..|++++
T Consensus 310 ~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~- 371 (537)
T 3fp2_A 310 PPTYYHRGQMYFI-LQDYKNAKEDFQKAQSLNPEN-----VYPYIQLACLLYKQ-----------GKFTESEAFFNETK- 371 (537)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----SHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-
Confidence 9999988877654 789999999999999965544 46889999998665 57899999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHc----------cCHHHHHHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ----------KRYEDAETIL 375 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~----------g~~~eA~~~~ 375 (446)
+.+|+++.+++.+|.++...|++++|+..|++++.++|+++ ...+..+|.++..+ |++++|+.++
T Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999998763 12356678999999 9999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
+++++.+| ++..+++.+|.++..+|++++|++.|++++++.|...+..
T Consensus 452 ~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 452 TKACELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999 8999999999999999999999999999999998766553
No 5
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=3.7e-33 Score=271.00 Aligned_cols=306 Identities=12% Similarity=0.063 Sum_probs=170.6
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.+.++..|.++...|++++|+..|+++++. .|.+ ..++..+|.++...|++++|+..|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------Cccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 467778888888888888888888888876 3432 246667778888888888888888887
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
++. + |+++.++..+|.
T Consensus 64 ~~~----~------------------------------------------------------------~~~~~~~~~l~~ 79 (359)
T 3ieg_A 64 IAL----K------------------------------------------------------------MDFTAARLQRGH 79 (359)
T ss_dssp HHH----C------------------------------------------------------------TTCHHHHHHHHH
T ss_pred HHh----C------------------------------------------------------------CCcchHHHHHHH
Confidence 776 3 333344444445
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCC---CcHHHHHHH------------HHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGII---NRKERYHIL------------ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
++...|++++|+..|+++++.+| +++.++..+ |.++...|++++|+..|++++ ..+|+++.++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL--EVCVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCchHHH
Confidence 55555555555555555555555 444444444 345555555555555555555 4555555544
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
..++.++.. .|++++|+..++++++..|.+ ..++..+|.++... |++++|+..|++++ +.+|
T Consensus 158 ~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~-~~~~ 219 (359)
T 3ieg_A 158 ELRAECFIK-EGEPRKAISDLKAASKLKSDN-----TEAFYKISTLYYQL-----------GDHELSLSEVRECL-KLDQ 219 (359)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCSCC-----HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHCT
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCc
Confidence 444443322 345555555555555532222 33444555544332 33455555555555 5555
Q ss_pred CCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 315 RDLSILY------------RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL---KGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 315 ~~~~a~~------------~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~---~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+++.++. .+|.++...|++++|+..+++++..+|+++. .++..+|.++..+|++++|+.++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5555433 2255555555555555555555555555420 123345555555555555555555555
Q ss_pred hhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 380 DQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 380 ~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+.+| +++.+++.+|.++...|++++|+..|++++++.|+
T Consensus 300 ~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 300 QMEP--DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 5555 55555555555555555555555555555555543
No 6
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=290.58 Aligned_cols=371 Identities=15% Similarity=0.060 Sum_probs=276.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCC-CCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEG-FPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
+..++..|.++..+|++++|++.|++++++..+..+.. +|. ...++..+|.+|..+|++++|+.+|++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-----------~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-----------SLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-----------THHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-----------HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45677899999999999999999999999865433221 232 234667889999999999999999999
Q ss_pred HhCCCC----CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 89 ALLPCW----NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSIL 164 (446)
Q Consensus 89 al~~~~----~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~ 164 (446)
++++.+ ...+.. ..+....+..++. ...+++++|+..+ +.+++.+|++++++
T Consensus 120 a~~i~~~~~~~~~~~~-~~~~~~~g~~~~~------------------~~~~~y~~A~~~~-----~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIES-PELDCEEGWTRLK------------------CGGNQNERAKVCF-----EKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHSCCSSCCCC-HHHHHHHHHHHHH------------------HCTTHHHHHHHHH-----HHHHHHSTTCHHHH
T ss_pred HHHHhHhcccccchhh-HHHHHHHHHHHHH------------------HccccHHHHHHHH-----HHHHHhCCCCHHHH
Confidence 998711 011111 1122333333222 2346799999986 66788899999999
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC----CChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 165 DHLSFAFS---IAGDLSSLATQIEELLPGIINRKERYHILALCYYGA----GEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 165 ~~lg~~l~---~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
..+|.++. ..++.++|++.|+++++++|+++.++..+|..+... |++++|+..|++++ ..+|+++.++..+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al--~~~~~~~~~~~~l 253 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL--EKAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH--HHCSSCHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HhCccHHHHHHHH
Confidence 99998855 457889999999999999999999999999887664 67889999999999 8999999999988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc--------hHHHHHHHHHHHHHHHHHH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT--------DFDRATRQAKALQALVSAA 309 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~--------~~~~~~~~~eAl~~~~~al 309 (446)
|.++. ..|++++|+..++++++..|.+ +.++..+|.+|..++..... .....+.+++|+..|++++
T Consensus 254 g~~~~-~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 254 AKFYR-RKDEPDKAIELLKKALEYIPNN-----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HcCchHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 77654 5799999999999999965543 67899999998766543211 1123466899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH--HHHHHHHHH-HHHccCHHHHHHHHHHHHhhcCC--
Q 013299 310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARI-LSAQKRYEDAETILNAALDQTGK-- 384 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~~la~~-~~~~g~~~eA~~~~~~al~~~p~-- 384 (446)
+++|+++.+++.+|.++...|++++|+.+|++++.++|++.. ..+..+|.+ +..+|++++|+..|+++++++|+
T Consensus 328 -~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 328 -EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp -HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred -hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999999999999999999987521 235666655 45789999999999999876541
Q ss_pred --------------------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 385 --------------------WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 385 --------------------~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++++.+++++|.++..+|++++|+++|+++|++.|..+++
T Consensus 407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 0567789999999999999999999999999998766544
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4e-33 Score=280.89 Aligned_cols=342 Identities=15% Similarity=0.098 Sum_probs=291.5
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
..+.++..|.++...|++++|+..|+++++. .|.+ ..++..+|.++...|++++|+..|++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDN-----------YIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3678999999999999999999999999986 3442 35778889999999999999999999
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCH---HHHH
Q 013299 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDP---SILD 165 (446)
Q Consensus 89 al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~---~~~~ 165 (446)
+++. +|.+.. ....++.. +...|++++|+..+ +.++...|+++ .++.
T Consensus 86 al~~----~p~~~~-~~~~l~~~--------------------~~~~g~~~~A~~~~-----~~~~~~~~~~~~~~~~~~ 135 (450)
T 2y4t_A 86 VIQL----KMDFTA-ARLQRGHL--------------------LLKQGKLDEAEDDF-----KKVLKSNPSENEEKEAQS 135 (450)
T ss_dssp HHHH----CTTCHH-HHHHHHHH--------------------HHHTTCHHHHHHHH-----HHHHTSCCCHHHHHHHHH
T ss_pred HHhc----CCCcHH-HHHHHHHH--------------------HHHcCCHHHHHHHH-----HHHHhcCCCChhhHHHHH
Confidence 9998 554432 23344443 44578899999886 56678889988 7776
Q ss_pred HH------------HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHH
Q 013299 166 HL------------SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (446)
Q Consensus 166 ~l------------g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a 233 (446)
.+ |.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++ ..+|+++.+
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 213 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS--KLKNDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH--HHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHH
Confidence 55 6679999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh------------hchhHhhhhhhhchHHHHHHHHHH
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL------------GISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l------------g~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
+..++.++.. .|++++|+.+++++++..|.+ ..++..+ |.++.. .|++++|
T Consensus 214 ~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~A 276 (450)
T 2y4t_A 214 FYKISTLYYQ-LGDHELSLSEVRECLKLDQDH-----KRCFAHYKQVKKLNKLIESAEELIR-----------DGRYTDA 276 (450)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHHHHHHHHH-----------HTCHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCHHHH
Confidence 9988877655 799999999999999965544 2333333 555543 4679999
Q ss_pred HHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 302 LQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
+..|++++ +++|+++. +++.+|.++...|++++|+..+++++.++|++ ..+|..+|.++..+|++++|+.++++
T Consensus 277 ~~~~~~~l-~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 277 TSKYESVM-KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHH-HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999 99999965 78999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHH------------HHHhC-----CHHHHHHHHHH-HHHHHhhhh
Q 013299 378 ALDQTGKWEQGELLRTKAKV------------QLVQG-----QLKGAVETYTH-LLAALQVQT 422 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~------------~~~~g-----~~~eA~~~~~~-~l~l~~~~~ 422 (446)
+++++| ++..++..++.+ +...| +.+++.+.|++ +++..|+..
T Consensus 355 al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 355 AQEHNE--NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHTTSS--SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHhCc--chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 999999 899999999955 33445 66788999997 777777654
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-33 Score=291.03 Aligned_cols=364 Identities=14% Similarity=0.048 Sum_probs=305.3
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHH---------------------------HH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQ---------------------------ET 61 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~---------------------------~~ 61 (446)
...+|+.+|.++.+.|++++|++.|+++++. .|........+. ..
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMV--------DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 4678999999999999999999999999986 333221100000 00
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
....+..++..|.+.|++++|+..|+++++.+ .++. ....++. .+...|++++|
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~l~~--------------------~~~~~g~~~~A 324 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLE--KSSD----LLLCKAD--------------------TLFVRSRFIDV 324 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG--GCHH----HHHHHHH--------------------HHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC--chHH----HHHHHHH--------------------HHHHhcCHHHH
Confidence 01112223556778999999999999999862 1221 1233333 34457889999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTL 221 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 221 (446)
+..+ +.++...|++..++..++.++...|++++|+..|++++..+|+++.+|+.+|.+|...|++++|+..|+++
T Consensus 325 ~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 325 LAIT-----TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHH-----HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-----HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9986 55677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHH
Q 013299 222 LSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 222 l~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
+ ..+|+++.++..++.++.. .|++++|+..|+++++..|++ ..++..+|.+|... |++++|
T Consensus 400 ~--~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-----------g~~~~A 460 (597)
T 2xpi_A 400 S--TMDPQFGPAWIGFAHSFAI-EGEHDQAISAYTTAARLFQGT-----HLPYLFLGMQHMQL-----------GNILLA 460 (597)
T ss_dssp H--HHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTTTC-----SHHHHHHHHHHHHH-----------TCHHHH
T ss_pred H--HhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHc-----------CCHHHH
Confidence 9 8999999999988877554 799999999999999965443 56888999988654 578999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------cCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL------EGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 302 l~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.+ +|++...+|..+|.++...|++++|+.++
T Consensus 461 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSY-ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHH-HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999 55531379999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhcccc
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVST 443 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (446)
+++++..| ++..++..+|.++...|++++|++.|++++++. |+...++.+.++++.
T Consensus 540 ~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~----------p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 540 NQGLLLST--NDANVHTAIALVYLHKKIPGLAITHLHESLAIS----------PNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------TTCHHHHHHHHHTTC
T ss_pred HHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----------CCChHHHHHHHHHHh
Confidence 99999999 899999999999999999999999999999996 555667777776654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=9.1e-32 Score=270.99 Aligned_cols=310 Identities=12% Similarity=0.057 Sum_probs=273.0
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
...++..+|..+.+.|++++|+..|+++++. +|.+.. ....++.. +...|++++|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~l~~~--------------------~~~~g~~~~A 79 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYI-AYYRRATV--------------------FLAMGKSKAA 79 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH-HHHHHHHH--------------------HHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHH-HHHHHHHH--------------------HHHCCCHHHH
Confidence 3467788899999999999999999999998 554422 23344443 3446789999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHH------------HHHHH
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHIL------------ALCYY 206 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------g~~~~ 206 (446)
+..+ +.++...|+++.++..+|.++...|++++|+..|++++..+|+++ .+|..+ |.++.
T Consensus 80 ~~~~-----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 80 LPDL-----TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886 566788899999999999999999999999999999999999999 887766 66699
Q ss_pred HCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 207 ~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
..|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+..++++++..|.+ ..++..+|.++...
T Consensus 155 ~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-- 224 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKIL--EVCVWDAELRELRAECFIK-EGEPRKAISDLKAASKLKNDN-----TEAFYKISTLYYQL-- 224 (450)
T ss_dssp HHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHCSC-----HHHHHHHHHHHHHT--
T ss_pred HcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc--
Confidence 9999999999999999 8999999999988877554 789999999999999965544 57899999998665
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhcCCCC---
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL------------SLEYAEQRKLNAAHYYAKMLLKLEGGSN--- 351 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l------------g~~~~~~~~~~~A~~~~~~al~l~P~~~--- 351 (446)
|++++|+..|++++ .++|+++.++..+ |.++...|++++|+..|++++.++|+++
T Consensus 225 ---------g~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 294 (450)
T 2y4t_A 225 ---------GDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294 (450)
T ss_dssp ---------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred ---------CCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence 57899999999999 9999999998777 9999999999999999999999999973
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
..++..+|.++...|++++|+..++++++.+| +++.+|+.+|.++...|++++|+..|++++++.|++..
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH
Confidence 13788999999999999999999999999999 89999999999999999999999999999999876543
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=7e-33 Score=271.41 Aligned_cols=310 Identities=14% Similarity=0.056 Sum_probs=250.3
Q ss_pred HHHHhHHHHHHhCChHHHHH-HHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013299 65 AVELLPELWKLADAPRETIM-SYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (446)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~-~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~ 143 (446)
.....+.++...|++++|+. .|++++...+. +|.........++. .+...|++++|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~-~~~~~~~~~~~~~~--------------------~~~~~g~~~~A~~ 85 (368)
T 1fch_A 27 MAKRDAEAHPWLSDYDDLTSATYDKGYQFEEE-NPLRDHPQPFEEGL--------------------RRLQEGDLPNAVL 85 (368)
T ss_dssp -------------------CHHHHCCCCCCSS-CTTTTCSSHHHHHH--------------------HHHHTTCHHHHHH
T ss_pred HHcCCchhhHHHHHHHHHHhhhhhHHHhcCCC-CcccchHHHHHHHH--------------------HHHHCCCHHHHHH
Confidence 33334456778899999999 99999988221 11000000122333 3445788999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
.+ +.++...|.++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|++++
T Consensus 86 ~~-----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 159 (368)
T 1fch_A 86 LF-----EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL- 159 (368)
T ss_dssp HH-----HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HH-----HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 86 566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHH---------------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 224 GSEDPKCLPALLIA---------------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 224 ~~~~P~~~~a~~~~---------------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
..+|++..++... .+.++ ..|++++|+.+++++++..|... ...++..+|.++...
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~~l~~~~~~~---- 230 (368)
T 1fch_A 160 -RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI---DPDVQCGLGVLFNLS---- 230 (368)
T ss_dssp -HTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC---CHHHHHHHHHHHHHT----
T ss_pred -HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc---cHHHHHHHHHHHHHc----
Confidence 8999988766421 23334 57899999999999999655421 257889999998664
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH
Q 013299 289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~ 368 (446)
|++++|+..|++++ +++|+++.+++++|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++
T Consensus 231 -------g~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 231 -------GEYDKAVDCFTAAL-SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-IRSRYNLGISCINLGAH 301 (368)
T ss_dssp -------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCH
T ss_pred -------CCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCH
Confidence 57899999999999 9999999999999999999999999999999999999999 59999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 369 EDAETILNAALDQTGKWEQ-----------GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 369 ~eA~~~~~~al~~~p~~~~-----------~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++|+.+++++++..| ++ ..+|..+|.++..+|++++|...++++++..++.
T Consensus 302 ~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 302 REAVEHFLEALNMQR--KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHHHHHHHHHHHHH--TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 999999999999999 66 8999999999999999999999999999987644
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-31 Score=279.76 Aligned_cols=373 Identities=12% Similarity=0.018 Sum_probs=305.5
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
...|...+..+...|++++|+..|+++++.. |+. ..+..++.+|...|++++|+..|+++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------p~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--------GNP------------NDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CCH------------HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhhC--------CCc------------hHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 4567888999999999999999999999752 431 24566889999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCC---------CCCCc-------------------cc--cccCccccCCCcHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGE---------TCPPN-------------------LR--SQMGSSFVPRNNIE 139 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~---------~~~~~-------------------~~--~~~~~~~~~~~~~~ 139 (446)
+..++ ++.. ...++..+...+.. ..|.. .. ..++..|...|+++
T Consensus 144 ~~~~~--~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 144 DLYNR--SSAC----RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp CGGGT--CHHH----HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hcccc--chhH----HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 77622 3321 22333333322211 01111 11 24456788899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHH--------------------------------------HHHhcCCHHHHH
Q 013299 140 EAILLLMILLRKVALKRIEWDPSILDHLSF--------------------------------------AFSIAGDLSSLA 181 (446)
Q Consensus 140 eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~--------------------------------------~l~~~~~~~~A~ 181 (446)
+|+..+ +.++...|+++.++..++. .+.+.|++++|+
T Consensus 218 ~A~~~~-----~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 218 RAKECY-----KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHH-----HHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHH-----HHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999986 5566788999988877654 344678999999
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 182 TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 182 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
+.|++++.. |.++.+|+.+|.++...|++++|+..|++++ ..+|++..++..++.++. ..|++++|+..++++++.
T Consensus 293 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 293 DYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL--EIDPYNLDVYPLHLASLH-ESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCCTTHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HcCcccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhh
Confidence 999999988 8899999999999999999999999999999 889999988887777655 478999999999999986
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
.|++ ..++..+|.+|... |++++|+..|++++ +++|+++.+|+.+|.++...|++++|+..|+
T Consensus 369 ~~~~-----~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 369 HPEK-----AVTWLAVGIYYLCV-----------NKISEARRYFSKSS-TMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CTTS-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred Cccc-----HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5443 57888899988665 57899999999999 9999999999999999999999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 342 MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++.++|++. .+|..+|.++...|++++|+.+|+++++..| +++.++..+|.++...|++++|++.|++++++.|+.
T Consensus 432 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 432 TAARLFQGTH-LPYLFLGMQHMQLGNILLANEYLQSSYALFQ--YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHTTTTCS-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCccch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9999999995 9999999999999999999999999999999 899999999999999999999999999999997642
Q ss_pred hhhccCCcch-hhHHhhhhcc
Q 013299 422 TKTFSSDKRF-YKVYFMRKRV 441 (446)
Q Consensus 422 ~~~~~~~~~~-~~~~~~~~~~ 441 (446)
+.+|.. ..+|+....+
T Consensus 509 ----~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 509 ----QSNEKPWAATWANLGHA 525 (597)
T ss_dssp ----CCCSGGGHHHHHHHHHH
T ss_pred ----ccchhhHHHHHHHHHHH
Confidence 334442 4555555444
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-31 Score=253.59 Aligned_cols=288 Identities=13% Similarity=0.024 Sum_probs=247.3
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHH
Q 013299 66 VELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLL 145 (446)
Q Consensus 66 ~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l 145 (446)
+..++..+...|++++|+..|+++++. +|.+... ...++.. +...|++++|+..+
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~-~~~~~~~--------------------~~~~~~~~~A~~~~ 79 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASC-LPVHIGT--------------------LVELNKANELFYLS 79 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTT-HHHHHHH--------------------HHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhh-HHHHHHH--------------------HHHhhhHHHHHHHH
Confidence 445567888899999999999999988 4433211 1222222 22356788998876
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC
Q 013299 146 MILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSG 224 (446)
Q Consensus 146 ~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 224 (446)
+.++...|+++.++..+|.++...| ++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++
T Consensus 80 -----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-- 152 (330)
T 3hym_B 80 -----HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA-- 152 (330)
T ss_dssp -----HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH--
T ss_pred -----HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH--
Confidence 5567788999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
..+|++..++..++.++.. .|++++|+.+++++++..|.+ ..++..+|.++... |++++|+..
T Consensus 153 ~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~ 215 (330)
T 3hym_B 153 QLMKGCHLPMLYIGLEYGL-TNNSKLAERFFSQALSIAPED-----PFVMHEVGVVAFQN-----------GEWKTAEKW 215 (330)
T ss_dssp HHTTTCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHc-----------ccHHHHHHH
Confidence 8999999988888776554 789999999999999965443 57889999998664 578999999
Q ss_pred HHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 305 LVSAARSTN---------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 305 ~~~al~~~~---------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
|++++ ++. |.++.+++++|.++...|++++|+..|++++.++|+++ .+|..+|.++..+|++++|+.++
T Consensus 216 ~~~a~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 216 FLDAL-EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA-STYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHH-HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS-HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHH-HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch-HHHHHHHHHHHHhccHHHHHHHH
Confidence 99999 887 78889999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHH-HHhCCHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQ-LVQGQLKG 406 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~-~~~g~~~e 406 (446)
+++++.+| ++..++..++.++ ...|+.+.
T Consensus 294 ~~al~~~p--~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 294 HTALGLRR--DDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HTTTTTCS--CCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHccCC--CchHHHHHHHHHHHHHhCchhc
Confidence 99999999 8999999999988 56666543
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.1e-30 Score=250.98 Aligned_cols=273 Identities=11% Similarity=0.034 Sum_probs=247.0
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG- 209 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 209 (446)
.+...|++++|+..+ +.++...|.++.++..++.++...|++++|+..++++++.+|+++.+|+.+|.++...|
T Consensus 31 ~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 31 RHYYNCDFKMCYKLT-----SVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHTTCHHHHHHHH-----HHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS
T ss_pred HHHHcCCHHHHHHHH-----HHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh
Confidence 344568999999886 56778899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI 289 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~ 289 (446)
++++|+..|++++ ..+|+++.++..+|.++.. .|++++|+..++++++..|.+ ..++..+|.++...
T Consensus 106 ~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~----- 172 (330)
T 3hym_B 106 KNEHARRYLSKAT--TLEKTYGPAWIAYGHSFAV-ESEHDQAMAAYFTAAQLMKGC-----HLPMLYIGLEYGLT----- 172 (330)
T ss_dssp CHHHHHHHHHHHH--TTCTTCTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTC-----SHHHHHHHHHHHHT-----
T ss_pred hHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHH-----
Confidence 9999999999999 8999999999988877554 789999999999999976554 46788899988664
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---------CCCCHHHHHHHHH
Q 013299 290 TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---------GGSNLKGWLLMAR 360 (446)
Q Consensus 290 ~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~---------P~~~~~~~~~la~ 360 (446)
|++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++.+. |..+ .+|..+|.
T Consensus 173 ------~~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~la~ 244 (330)
T 3hym_B 173 ------NNSKLAERFFSQAL-SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE-PLLNNLGH 244 (330)
T ss_dssp ------TCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC-HHHHHHHH
T ss_pred ------hhHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH-HHHHHHHH
Confidence 57899999999999 9999999999999999999999999999999999997 6664 89999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhc
Q 013299 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKR 440 (446)
Q Consensus 361 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 440 (446)
++..+|++++|+.+++++++.+| ++..+++.+|.++..+|++++|++.|++++++.| ....++..+++
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~l~~ 312 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR----------DDTFSVTMLGH 312 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS----------CCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC----------CchHHHHHHHH
Confidence 99999999999999999999999 8999999999999999999999999999999864 44455555554
Q ss_pred c
Q 013299 441 V 441 (446)
Q Consensus 441 ~ 441 (446)
+
T Consensus 313 ~ 313 (330)
T 3hym_B 313 C 313 (330)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.98 E-value=6.7e-29 Score=240.93 Aligned_cols=311 Identities=14% Similarity=0.104 Sum_probs=210.5
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.++++.+|.++..+|++++|+..|+++++. .|.. ..++..+|.++...|++++|+..|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDF-----------TAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCc-----------chHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 568999999999999999999999999987 3442 257788999999999999999999999
Q ss_pred hCCCCCCCh---HHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 013299 90 LLPCWNLDA---ETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDH 166 (446)
Q Consensus 90 l~~~~~~~~---~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~ 166 (446)
++. +| .+... ...++....... ....+..+...|++++|+..+ +.++...|.++.++..
T Consensus 98 ~~~----~~~~~~~~~~-~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 98 LKS----NPSEQEEKEA-ESQLVKADEMQR--------LRSQALDAFDGADYTAAITFL-----DKILEVCVWDAELREL 159 (359)
T ss_dssp HTS----CCCHHHHHHH-HHHHHHHHHHHH--------HHHHHHHHHHTTCHHHHHHHH-----HHHHHHCTTCHHHHHH
T ss_pred Hhc----CCcccChHHH-HHHHHHHHHHHH--------HHHHHHHHHHccCHHHHHHHH-----HHHHHhCCCchHHHHH
Confidence 998 66 44321 111111000000 000011223344455554443 2333444555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCC
Q 013299 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD 246 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~ 246 (446)
+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++.....+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~----- 232 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL--KLDQDHKRCFAHYKQVK----- 232 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCccchHHHHHHHHHH-----
Confidence 55555555555555555555555555555555555555555555555555555555 44555444332211110
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH----HHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS----ILYR 322 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~----a~~~ 322 (446)
.......+|.++.. .|++++|+..|++++ +.+|+++. ++..
T Consensus 233 -----------------------~~~~~~~~a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 233 -----------------------KLNKLIESAEELIR-----------DGRYTDATSKYESVM-KTEPSVAEYTVRSKER 277 (359)
T ss_dssp -----------------------HHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHH-HHCCSSHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHH-hcCCCchHHHHHHHHH
Confidence 01123344555544 467899999999999 99999985 4667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|+++++.+| ++..++..++.+...++
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--NDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 59999999999999999999999999999999 88998888888776554
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.5e-29 Score=258.50 Aligned_cols=238 Identities=13% Similarity=0.019 Sum_probs=217.2
Q ss_pred cCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Q 013299 128 MGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG 207 (446)
Q Consensus 128 ~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 207 (446)
++..+...|++++|+..+ +.++...|. +.++..+|.++...|++++|+..|++++..+|+++.+|+.+|.++..
T Consensus 243 ~~~~~~~~~~~~~A~~~~-----~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDI-----KKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHSSCHHHHHHHH-----HHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-----HHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 345677889999999876 556778899 99999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhh
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (446)
.|++++|+..|++++ ..+|+++.++..++.++ ...|++++|+..++++++..|.+ ..++..+|.++...
T Consensus 317 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~--- 385 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAK--ELDPENIFPYIQLACLA-YRENKFDDCETLFSEAKRKFPEA-----PEVPNFFAEILTDK--- 385 (514)
T ss_dssp TTCTTHHHHHHHHHH--HTCSSCSHHHHHHHHHT-TTTTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHT---
T ss_pred hCCHHHHHHHHHHHH--HhChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcccC-----HHHHHHHHHHHHHC---
Confidence 999999999999999 89999999998887664 55799999999999999965544 46888999998665
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 288 AITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAE---QRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 288 ~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------a~~~lg~~~~~---~~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
|++++|+..|++++ +++|+++. +++.+|.++.. .|++++|+..|++++.++|++ ..+|..+
T Consensus 386 --------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 455 (514)
T 2gw1_A 386 --------NDFDKALKQYDLAI-ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGL 455 (514)
T ss_dssp --------TCHHHHHHHHHHHH-HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred --------CCHHHHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHH
Confidence 57899999999999 99999966 99999999999 999999999999999999999 5999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 013299 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTK 394 (446)
Q Consensus 359 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~ 394 (446)
|.++..+|++++|+.+++++++.+| ++..++..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLAR--TMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS--SHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhcc--ccHHHHHHH
Confidence 9999999999999999999999999 888887765
No 16
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=1.8e-31 Score=264.80 Aligned_cols=248 Identities=11% Similarity=0.044 Sum_probs=225.7
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHhcCCCCCCChH
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~~~P~~~~ 232 (446)
+..+|+++++|..+|.++...|++++|++.|++++.++|++..+|+++|.++..+|+ +++|+..|+++| .++|+++.
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al--~l~P~~~~ 167 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII--EEQPKNYQ 167 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH--HHCCCCHH
Confidence 567799999999999999999999999999999999999999999999999999997 999999999999 89999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 013299 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (446)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~ 312 (446)
+++.+|.++. ..|++++|+.+|+++|+..|.+ ..+|+++|.++... |++++|+.+|++++ ++
T Consensus 168 a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~-----~~a~~~lg~~~~~~-----------g~~~eAl~~~~~al-~l 229 (382)
T 2h6f_A 168 VWHHRRVLVE-WLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEF-----------KLWDNELQYVDQLL-KE 229 (382)
T ss_dssp HHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH-----------TCCTTHHHHHHHHH-HH
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-Hh
Confidence 9999887755 4789999999999999965544 68999999999765 56899999999999 99
Q ss_pred CCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhcCC
Q 013299 313 NMRDLSILYRLSLEYAE-QRKLNAA-----HYYAKMLLKLEGGSNLKGWLLMARILSAQK--RYEDAETILNAALDQTGK 384 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~-~~~~~~A-----~~~~~~al~l~P~~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~ 384 (446)
+|+++.+|+++|.++.. .|.+++| +.+|++|+.++|++ ..+|+++|.++..+| ++++|+..++++ +.+|
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p- 306 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH- 306 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-
Confidence 99999999999999999 5665888 59999999999999 599999999999988 799999999998 8899
Q ss_pred CCcHHHHHHHHHHHHHhC---------CHHHHHHHHHHH-HHHHhhhhhhc
Q 013299 385 WEQGELLRTKAKVQLVQG---------QLKGAVETYTHL-LAALQVQTKTF 425 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g---------~~~eA~~~~~~~-l~l~~~~~~~~ 425 (446)
++..++..+|.++..+| .+++|++.|+++ ++++|...+.|
T Consensus 307 -~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 307 -SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 89999999999999985 359999999999 89876555444
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=7.7e-30 Score=258.87 Aligned_cols=372 Identities=12% Similarity=0.014 Sum_probs=281.2
Q ss_pred HHhhhh--cccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCC
Q 013299 16 KAKCLQ--GLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (446)
Q Consensus 16 ~g~~~~--~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~ 93 (446)
.-.|++ .+++.+.++..++..|...... .+... ....+..+|.++..+|++++|+..|++++++.
T Consensus 15 ~l~chf~w~l~~~~~~l~~~e~~~~~~~~~----~~~~~---------~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~ 81 (472)
T 4g1t_A 15 QLKCHFTWNLMEGENSLDDFEDKVFYRTEF----QNREF---------KATMCNLLAYLKHLKGQNEAALECLRKAEELI 81 (472)
T ss_dssp TSCSTTTSCTTTTCCCHHHHHHHHHHHTTS----CC------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhChHHHhHHHHHHHHHHHHHHHHHHHHh----CCChh---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 335665 5677777888777766542111 11111 12467789999999999999999999999861
Q ss_pred -----CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHH--HHHh-hcCCCCHHHHH
Q 013299 94 -----WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR--KVAL-KRIEWDPSILD 165 (446)
Q Consensus 94 -----~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~--~~~l-~~~p~~~~~~~ 165 (446)
...+|.... ...++| .+|..+|++++|+..+..+.. .... ...+..+.++.
T Consensus 82 ~~~~~~~~~~~~~~-~~~nla--------------------~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 82 QQEHADQAEIRSLV-TWGNYA--------------------WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHSGGGCTTTTHH-HHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HhcCccccchHHHH-HHHHHH--------------------HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 011221111 122233 345668899999988743311 1000 12346788999
Q ss_pred HHHHHHHhc--CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 166 HLSFAFSIA--GDLSSLATQIEELLPGIINRKERYHILALCYYG---AGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 166 ~lg~~l~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
.+|.++... +++++|+++|++++.++|++++++..+|.++.. .|++++|+..|++++ .++|+++.++..++..
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al--~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI--RLNPDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH--HHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh--hcCCcchHHHHHHHHH
Confidence 999888765 479999999999999999999999999998654 578899999999999 8999999988766644
Q ss_pred H---hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 241 C---GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 241 ~---~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
+ ....+++++|+.++++++...|.. ..++..+|.+|... |++++|+..|++++ +.+|+++
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~ 281 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKAPGV-----TDVLRSAAKFYRRK-----------DEPDKAIELLKKAL-EYIPNNA 281 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHCSSC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhCccH-----HHHHHHHHHHHHHc-----------CchHHHHHHHHHHH-HhCCChH
Confidence 3 234567889999999999965543 57889999999765 57899999999999 9999999
Q ss_pred HHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQ-------------------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 318 ~a~~~lg~~~~~~-------------------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
.+++++|.+|..+ +.+++|+..|++++.++|++. .++..+|.++..+|++++|+.+|+++
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF-RVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC-CCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh-hhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 9999999998643 457899999999999999995 99999999999999999999999999
Q ss_pred HhhcCCCCcH---HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHhhhhhh--------------ccCCcchhhHHhhhhc
Q 013299 379 LDQTGKWEQG---ELLRTKAKV-QLVQGQLKGAVETYTHLLAALQVQTKT--------------FSSDKRFYKVYFMRKR 440 (446)
Q Consensus 379 l~~~p~~~~~---~~~~~~a~~-~~~~g~~~eA~~~~~~~l~l~~~~~~~--------------~~~~~~~~~~~~~~~~ 440 (446)
++..| ++. .+++.+|.+ +...|++++|+..|++++++.|+.... ...+|+...+|++++.
T Consensus 361 L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 361 FSKEL--TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHSCC--CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred HhcCC--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99988 443 346667764 457899999999999999998875432 3457888888888887
Q ss_pred ccc
Q 013299 441 VST 443 (446)
Q Consensus 441 ~~~ 443 (446)
|+.
T Consensus 439 ~~~ 441 (472)
T 4g1t_A 439 LQE 441 (472)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=3.9e-30 Score=251.83 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=232.6
Q ss_pred CCcHHHHHH-HHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC
Q 013299 135 RNNIEEAIL-LLMILLRKVALKRIEWD----PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (446)
Q Consensus 135 ~~~~~eA~~-~l~~~~~~~~l~~~p~~----~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 209 (446)
.+++++|+. .+ +.++...|.+ ...++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|
T Consensus 38 ~~~~~~a~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 38 LSDYDDLTSATY-----DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp --------CHHH-----HCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh-----hHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 456777776 54 3445666765 4678999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-----------hHHHHHhh
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME-----------STANCLLG 278 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~-----------~~a~~~lg 278 (446)
++++|+..|++++ .++|+++.++..++.++.. .|++++|+..++++++..|.+..... ...+..+|
T Consensus 113 ~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 113 QELLAISALRRCL--ELKPDNQTALMALAVSFTN-ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp CHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred CHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 9999999999999 8999999999988877554 79999999999999996554322110 00011344
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~ 356 (446)
.++ ..|++++|+..|++++ +++|+ ++.+++.+|.++...|++++|+..|++++.++|++ ..+|.
T Consensus 190 ~~~------------~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 255 (368)
T 1fch_A 190 SLL------------SDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWN 255 (368)
T ss_dssp HHH------------HHHHHHHHHHHHHHHH-HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred HHh------------hcccHHHHHHHHHHHH-HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHH
Confidence 443 3478999999999999 99999 89999999999999999999999999999999999 59999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccC-CcchhhHH
Q 013299 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS-DKRFYKVY 435 (446)
Q Consensus 357 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~-~~~~~~~~ 435 (446)
.+|.++..+|++++|+.+++++++.+| ++..+++.+|.++...|++++|+..|++++++.|+.....+. .+....++
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999999999 899999999999999999999999999999999986443322 34445566
Q ss_pred hhhhccc
Q 013299 436 FMRKRVS 442 (446)
Q Consensus 436 ~~~~~~~ 442 (446)
...+.+.
T Consensus 334 ~~l~~~~ 340 (368)
T 1fch_A 334 STLRLAL 340 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=7e-30 Score=245.16 Aligned_cols=267 Identities=15% Similarity=0.052 Sum_probs=240.3
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 209 (446)
..+...|++++|+..+ +.++...|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus 29 ~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 29 LSMLKLANLAEAALAF-----EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHTTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 3455678999999886 56678889999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCChHHHHHH--------------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLPALLIA--------------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~a~~~~--------------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (446)
++++|+..|++++ ..+|++...+... +..++...|++++|+.+++++++..|.+ ..++.
T Consensus 104 ~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~ 176 (327)
T 3cv0_A 104 NANAALASLRAWL--LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND-----AQLHA 176 (327)
T ss_dssp CHHHHHHHHHHHH--HTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC-----HHHHH
T ss_pred CHHHHHHHHHHHH--HhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC-----HHHHH
Confidence 9999999999999 8999988776654 3313566789999999999999965543 57889
Q ss_pred HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
.+|.++... |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|
T Consensus 177 ~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~ 243 (327)
T 3cv0_A 177 SLGVLYNLS-----------NNYDSAAANLRRAV-ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-VRVM 243 (327)
T ss_dssp HHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred HHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHH
Confidence 999998664 57899999999999 9999999999999999999999999999999999999999 5999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCC------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWE------------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
..+|.++..+|++++|+.+++++++..| + +..++..+|.++..+|++++|...++++++..|+..+
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQV--GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT--TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999999999999999 7 7899999999999999999999999999999987654
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=5.9e-29 Score=255.90 Aligned_cols=308 Identities=13% Similarity=0.094 Sum_probs=238.6
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
...++..+|..+...|++++|+..|+++++. +|.+.. ....++.. +...|++++|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~-~~~~la~~--------------------~~~~g~~~~A 78 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPV-FYSNISAC--------------------YISTGDLEKV 78 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----CTTCHH-HHHHHHHH--------------------HHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----CCCCcH-HHHHHHHH--------------------HHHcCCHHHH
Confidence 4578888999999999999999999999998 555432 23444444 3346789999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHH----------------------
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYH---------------------- 199 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~---------------------- 199 (446)
+..+ +.++..+|+++.++..+|.++...|++++|+..|+ ++..+|+....+.
T Consensus 79 ~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 152 (537)
T 3fp2_A 79 IEFT-----TKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK 152 (537)
T ss_dssp HHHH-----HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHH-----HHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9986 56778899999999999999999999999999995 7777777655331
Q ss_pred ----------------------------------------------HHHHH--------HHHCCChHHHHHHHHHHhcCC
Q 013299 200 ----------------------------------------------ILALC--------YYGAGEDLVALNLLRTLLSGS 225 (446)
Q Consensus 200 ----------------------------------------------~lg~~--------~~~~g~~~eA~~~~~~al~~~ 225 (446)
.++.+ ....|++++|+..|++++ .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l--~ 230 (537)
T 3fp2_A 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL--S 230 (537)
T ss_dssp ------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred CccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--H
Confidence 11111 222357888999999999 8
Q ss_pred CCCCChHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHH
Q 013299 226 EDPKCLPA-------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQ 298 (446)
Q Consensus 226 ~~P~~~~a-------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 298 (446)
.+|+++.+ +..+|.+ +...|++++|+.+++++++..|. ..++..+|.++... |++
T Consensus 231 ~~p~~~~~~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~-----------~~~ 292 (537)
T 3fp2_A 231 ANTVDDPLRENAALALCYTGIF-HFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADK-----------ENS 292 (537)
T ss_dssp --CCCHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCS-----------SCC
T ss_pred HCCCcchhhHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHh-----------cCH
Confidence 89988663 4444444 44468889999999999985432 45788888887654 467
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|+++ .+|..+|.++..+|++++|+.+++++
T Consensus 293 ~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAV-DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-YPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999 89999999999999999999999999999999999999885 88999999999999999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 379 l~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++.+| +++.++..+|.++...|++++|+..|++++++.|.....
T Consensus 371 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 371 KLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 99988 788888899999999999999999999999888765443
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=8.5e-30 Score=250.01 Aligned_cols=247 Identities=14% Similarity=0.049 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
+...++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ .++|+++.++..+|.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL--ELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHH
Confidence 445699999999999999999999999999999999999999999999999999999999999 899999999998887
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchh-----hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQM-----ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
++. ..|++++|+.+++++++..|.+.... ....+..+|.++.. .|++++|+..|++++ +++|
T Consensus 142 ~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~al-~~~p 208 (365)
T 4eqf_A 142 SYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD-----------SSVLEGVKELYLEAA-HQNG 208 (365)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------C-----------CHHHHHHHHHHHHHH-HHSC
T ss_pred HHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh-----------hhhHHHHHHHHHHHH-HhCc
Confidence 755 47999999999999999644321110 01223344666655 467999999999999 9999
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 315 R--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 315 ~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+ ++.+++++|.++..+|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|+++++.+| ++..+++
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 285 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-YSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRY 285 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHH
Confidence 9 99999999999999999999999999999999999 59999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++|.++..+|++++|+..|++++++.|+....
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 99999999999999999999999999875543
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=1.2e-29 Score=231.90 Aligned_cols=211 Identities=19% Similarity=0.108 Sum_probs=176.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
|.+++++..+|.++...|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++ +++|+++.++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV--ARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCcHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999 8999999999888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
|.++... + . .... .. ...|++++|+..|++++ +++|+++
T Consensus 80 g~~~~~~-~------------~--~~~~--------------~~-----------~~~g~~~~A~~~~~~al-~~~P~~~ 118 (217)
T 2pl2_A 80 SEAYVAL-Y------------R--QAED--------------RE-----------RGKGYLEQALSVLKDAE-RVNPRYA 118 (217)
T ss_dssp HHHHHHH-H------------H--TCSS--------------HH-----------HHHHHHHHHHHHHHHHH-HHCTTCH
T ss_pred HHHHHHh-h------------h--hhhh--------------hc-----------ccccCHHHHHHHHHHHH-HhCcccH
Confidence 7765431 0 0 0000 00 12367999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.+++++|.++..+|++++|+..|+++++++ ++ ..+|.++|.++..+|++++|+..|+++++.+| +++.+++.+|.+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~ 194 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASA 194 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 999999999999999999999999999999 88 59999999999999999999999999999999 999999999999
Q ss_pred HHHhCCHHHHHHHHHHHH
Q 013299 398 QLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 398 ~~~~g~~~eA~~~~~~~l 415 (446)
+..+|++++|++.|+++-
T Consensus 195 ~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 195 LLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HTC---------------
T ss_pred HHHccCHHHHHHHHHHHh
Confidence 999999999999998763
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=2.1e-30 Score=254.33 Aligned_cols=265 Identities=15% Similarity=0.100 Sum_probs=230.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 210 (446)
.+...|++++|+..+ +.++...|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|+
T Consensus 74 ~~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 74 KRLKEGDLPVTILFM-----EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHH-----HHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 445578899999986 566788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHH---------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchh
Q 013299 211 DLVALNLLRTLLSGSEDPKCLPALLIA---------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISL 281 (446)
Q Consensus 211 ~~eA~~~~~~al~~~~~P~~~~a~~~~---------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 281 (446)
+++|+..|++++ .++|++..++... .+.++...|++++|+.+++++++..|... .+.+++.+|.++
T Consensus 149 ~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~l~~~~ 223 (365)
T 4eqf_A 149 QQDACEALKNWI--KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI---DPDLQTGLGVLF 223 (365)
T ss_dssp HHHHHHHHHHHH--HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc---CHHHHHHHHHHH
Confidence 999999999999 8999877665443 13345668999999999999999755421 257889999998
Q ss_pred HhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 282 SAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
... |++++|+..|++++ +++|+++.+++++|.++...|++++|+..|+++++++|++ ..+|.++|.+
T Consensus 224 ~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 290 (365)
T 4eqf_A 224 HLS-----------GEFNRAIDAFNAAL-TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGIS 290 (365)
T ss_dssp HHH-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHC-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHH
Confidence 664 57899999999999 9999999999999999999999999999999999999999 5999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCC----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 362 LSAQKRYEDAETILNAALDQTGKWE----------QGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 362 ~~~~g~~~eA~~~~~~al~~~p~~~----------~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
+..+|++++|+.++++++++.|+.. +..+|..++.++..+|+.+.+....++.++..
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 9999999999999999999998311 36789999999999999999999888766554
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=2.7e-29 Score=249.11 Aligned_cols=232 Identities=9% Similarity=-0.026 Sum_probs=186.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 152 VALKRIEWDPSILDHLSFAFSIAGD-LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
.++..+|+++.+|+++|.++...|+ +++|+.+|++++.++|+++.+|+++|.++..+|++++|+..|+++| .++|++
T Consensus 122 ~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal--~ldP~~ 199 (382)
T 2h6f_A 122 DAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL--NQDAKN 199 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH--HHCTTC
T ss_pred HHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCccC
Confidence 3444557777788888888888886 8888888888888888888888888888888888888888888888 788888
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
+.++..+|.++. ..|++++|+.+|+++|+..|.+ ..+|+++|.++...+... .....++++.+|++++
T Consensus 200 ~~a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~~-----~~a~~~lg~~l~~l~~~~-----~eA~~~~el~~~~~Al- 267 (382)
T 2h6f_A 200 YHAWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVRN-----NSVWNQRYFVISNTTGYN-----DRAVLEREVQYTLEMI- 267 (382)
T ss_dssp HHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCSC-----SHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCcc-----hHHHHHHHHHHHHHHH-
Confidence 888887776544 4677888888888888854443 567888888876622100 0001234479999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc--------C-HHHHHHHHHHH-
Q 013299 311 STNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK--------R-YEDAETILNAA- 378 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g--------~-~~eA~~~~~~a- 378 (446)
+++|++..+|+++|.++...| ++++|+..++++ .++|++ ..++..+|.++..+| + +++|+.+|+++
T Consensus 268 ~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~ 345 (382)
T 2h6f_A 268 KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 345 (382)
T ss_dssp HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999988 799999999998 999999 599999999999985 3 69999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHh
Q 013299 379 LDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 379 l~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
++++| .....|..++..+..+
T Consensus 346 ~~~DP--~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 346 KEKDT--IRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HTTCG--GGHHHHHHHHHHHHHH
T ss_pred HHhCc--hhHHHHHHHHHHHHHH
Confidence 99999 8999999988877654
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=4.2e-27 Score=225.72 Aligned_cols=239 Identities=15% Similarity=0.041 Sum_probs=215.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
++..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR--MLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCcCCHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999 899999999988887
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh--------------hc-hhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL--------------GI-SLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l--------------g~-~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
++. ..|++++|+..++++++..|... ..+..+ |. ++.. .|++++|+..
T Consensus 98 ~~~-~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~ 160 (327)
T 3cv0_A 98 SHT-NEHNANAALASLRAWLLSQPQYE-----QLGSVNLQADVDIDDLNVQSEDFFFAA-----------PNEYRECRTL 160 (327)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHTSTTTT-----TC--------------------CCTTS-----------HHHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHHHHHHhCCccH-----HHHHHHhHHHHHHHHHHHHHHhHHHHH-----------cccHHHHHHH
Confidence 755 47899999999999999654432 233333 43 3433 4679999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013299 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 384 (446)
+++++ +.+|+++.+++.+|.++...|++++|+..+++++.++|++ ..+|..+|.++...|++++|+.+++++++..|
T Consensus 161 ~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~- 237 (327)
T 3cv0_A 161 LHAAL-EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-AQLWNKLGATLANGNRPQEALDAYNRALDINP- 237 (327)
T ss_dssp HHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHH-hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Confidence 99999 9999999999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++..+++.+|.++...|++++|+..|++++++.|..
T Consensus 238 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 238 -GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 899999999999999999999999999999999874
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-27 Score=219.65 Aligned_cols=247 Identities=12% Similarity=0.020 Sum_probs=218.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC-------h
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-------L 231 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~-------~ 231 (446)
..++++..+|.++...|++++|+..|+++++.+ +++.+|+.+|.++...|++++|+..|++++ ..+|++ +
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV--EQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH--HhCcccccchHHHH
Confidence 346788999999999999999999999999999 999999999999999999999999999999 888877 6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
.++..+|.++. ..|++++|+.+++++++..+. .. ++ ...+++++|+..+++++ .
T Consensus 80 ~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~------~~-------~~-----------~~~~~~~~a~~~~~~~~-~ 133 (258)
T 3uq3_A 80 KSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT------AD-------IL-----------TKLRNAEKELKKAEAEA-Y 133 (258)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC------HH-------HH-----------HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHH-HcccHHHHHHHHHHHHhcCch------hH-------HH-----------HHHhHHHHHHHHHHHHH-H
Confidence 77887776655 579999999999999995432 12 22 22467899999999999 9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+| +++.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~ 210 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAY 210 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--HHHHHH
Confidence 999999999999999999999999999999999999999 59999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhcc
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRV 441 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 441 (446)
+.+|.++..+|++++|+..|++++++.|+.. ..|.-..++....++
T Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 211 IRKATAQIAVKEYASALETLDAARTKDAEVN----NGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH----TTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhChhhc----CCCchHHHHHHHHHh
Confidence 9999999999999999999999999996542 234444455444443
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=1.1e-27 Score=224.61 Aligned_cols=242 Identities=15% Similarity=0.086 Sum_probs=211.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH----HHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALL 235 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~----a~~ 235 (446)
+++++...|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ . .|+++. ++.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF--S-KVNATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH--T-TSCTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH--h-ccCchhHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999 6 444443 366
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
.+|.++ ...|++++|+.+++++++..|.+ ..++..+|.++... |++++|+..|++++ +++|+
T Consensus 79 ~lg~~~-~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~~~ 140 (272)
T 3u4t_A 79 YYGKIL-MKKGQDSLAIQQYQAAVDRDTTR-----LDMYGQIGSYFYNK-----------GNFPLAIQYMEKQI-RPTTT 140 (272)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHSTTC-----THHHHHHHHHHHHT-----------TCHHHHHHHHGGGC-CSSCC
T ss_pred HHHHHH-HHcccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHh-hcCCC
Confidence 666665 45799999999999999965544 57899999999765 57899999999999 99999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhc---CCCC---
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR---YEDAETILNAALDQT---GKWE--- 386 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~---p~~~--- 386 (446)
++.+++++|......+++++|+..|+++++++|++ ..++..+|.++..+|+ +++|+..++++++.. | +
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~ 217 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG--AKYK 217 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG--GGGH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc--ccch
Confidence 99999999955555679999999999999999999 5999999999999999 999999999999876 5 3
Q ss_pred --cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 387 --QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 387 --~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
...++..+|.++...|++++|++.|++++++.|++..+.
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 237889999999999999999999999999987765544
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=6.3e-26 Score=216.92 Aligned_cols=277 Identities=10% Similarity=0.042 Sum_probs=223.0
Q ss_pred HHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH
Q 013299 73 WKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV 152 (446)
Q Consensus 73 ~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~ 152 (446)
.+..|++.+|+..++++... +|++......-++. .|+.+|++++|+..+ +
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~----~p~~~~e~~~~l~r--------------------~yi~~g~~~~al~~~-----~- 58 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS----SPERDVERDVFLYR--------------------AYLAQRKYGVVLDEI-----K- 58 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC----SHHHHHHHHHHHHH--------------------HHHHTTCHHHHHHHS-----C-
T ss_pred HHHHHHHHHHHHHHHhcccC----CchhhHHHHHHHHH--------------------HHHHCCCHHHHHHHh-----c-
Confidence 47799999999999998887 77653211122222 355678899998653 1
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC
Q 013299 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~ 230 (446)
...|.+..++..++..+...|+.++|++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |++
T Consensus 59 --~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~ 129 (291)
T 3mkr_A 59 --PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDS 129 (291)
T ss_dssp --TTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS
T ss_pred --ccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC
Confidence 224556678888999999999999999999998865 699999999999999999999999998875 788
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~ 310 (446)
+.++..++.++.. .|++++|+..++++++..|++ ....++.++.... ...|++++|+..|++++
T Consensus 130 ~~~~~~l~~~~~~-~g~~~~A~~~l~~~~~~~p~~-------~~~~l~~a~~~l~-------~~~~~~~eA~~~~~~~l- 193 (291)
T 3mkr_A 130 LECMAMTVQILLK-LDRLDLARKELKKMQDQDEDA-------TLTQLATAWVSLA-------AGGEKLQDAYYIFQEMA- 193 (291)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHH-------HCTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCcCc-------HHHHHHHHHHHHH-------hCchHHHHHHHHHHHHH-
Confidence 9999888877554 799999999999999964332 1223332222111 01367999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHhhcCCCCcHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED-AETILNAALDQTGKWEQGE 389 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~p~~~~~~ 389 (446)
+.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++ +..+++++++++| +++.
T Consensus 194 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P--~~~~ 270 (291)
T 3mkr_A 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR--SHPF 270 (291)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--CChH
Confidence 9999999999999999999999999999999999999999 4999999999999999987 5689999999999 8877
Q ss_pred HHHHHHHHHHHhCCHHHHHHHH
Q 013299 390 LLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
+. .+..+.+.|+++...|
T Consensus 271 ~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 271 IK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HH----HHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHc
Confidence 54 3455677777777666
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=7.8e-24 Score=216.83 Aligned_cols=346 Identities=12% Similarity=0.029 Sum_probs=250.3
Q ss_pred HHHHHHHHhhhhc----ccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHH----hCChHH
Q 013299 10 LEAIFLKAKCLQG----LGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKL----ADAPRE 81 (446)
Q Consensus 10 ~~~~~~~g~~~~~----~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~----~g~~~e 81 (446)
.++++..|.+|.. .+++++|+..|+++++.. . ..+...+|.+|.. .+++++
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~--------------~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------Y--------------TPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C--------------HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C--------------HHHHHHHHHHHHcCCCCCCCHHH
Confidence 6778888888888 888888888888887531 1 2366667777777 777777
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcC-CCC-------------C--CccccccCccccC----CCcHHHH
Q 013299 82 TIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGG-ETC-------------P--PNLRSQMGSSFVP----RNNIEEA 141 (446)
Q Consensus 82 A~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~-~~~-------------~--~~~~~~~~~~~~~----~~~~~eA 141 (446)
|+.+|+++++.. ++. ....++.++..+.. ... . +.....++.+|.. .+++++|
T Consensus 98 A~~~~~~a~~~~---~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQ----AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHTT---CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC---CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 777777777651 221 13445555444211 100 0 0000112222322 5577777
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH----CCChHH
Q 013299 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLV 213 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~e 213 (446)
+..+. .+.. ..++.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.++.. .+++++
T Consensus 171 ~~~~~-----~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 171 REWYS-----KAAE--QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHH-----HHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHH-----HHHH--CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 77652 2233 3577888888888887 78888888888888764 567788888888886 778888
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhc
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (446)
|+..|++++ .. +++.+++.++.++.. ..++.++|+.+|+++++. .+ +.+++.+|.+|......
T Consensus 242 A~~~~~~a~--~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~-----~~a~~~Lg~~y~~~~~g--- 307 (490)
T 2xm6_A 242 SRVLFSQSA--EQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN-----SDGQYYLAHLYDKGAEG--- 307 (490)
T ss_dssp HHHHHHHHH--TT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC-----HHHHHHHHHHHHHCBTT---
T ss_pred HHHHHHHHH--HC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHcCCCC---
Confidence 888888888 33 556677766666543 146788888888888763 11 45777888777542000
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---
Q 013299 291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA--- 364 (446)
Q Consensus 291 ~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~--- 364 (446)
..+++++|+.+|++++ +. +++.+++++|.++...| ++++|+.+|+++++. ++ ..+++++|.++..
T Consensus 308 ---~~~~~~~A~~~~~~a~-~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~-~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 308 ---VAKNREQAISWYTKSA-EQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE-KAAQFNLGNALLQGKG 378 (490)
T ss_dssp ---BCCCHHHHHHHHHHHH-HT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSS
T ss_pred ---CcCCHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHcCCC
Confidence 0146899999999999 75 67899999999999876 899999999999887 56 4999999999999
Q ss_pred -ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHh
Q 013299 365 -QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 365 -~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~~ 419 (446)
.+++++|+.+|+++++. +++.+++++|.++.. .+++++|+..|+++++..|
T Consensus 379 ~~~~~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 89999999999999874 467899999999999 8999999999999999983
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=1.2e-26 Score=217.42 Aligned_cols=243 Identities=12% Similarity=0.055 Sum_probs=209.7
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHH
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE----RYHILALCYY 206 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~ 206 (446)
.+...|++++|+..+ +.++...|+++.++..+|.++...|++++|+..|++++. .|+++. +|+.+|.++.
T Consensus 12 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVF-----NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHTTTCHHHHHHHH-----HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 455678999999986 567788999999999999999999999999999999999 555544 4999999999
Q ss_pred HCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh-chhHhhh
Q 013299 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG-ISLSAQS 285 (446)
Q Consensus 207 ~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~ 285 (446)
..|++++|+..|++++ ..+|+++.++..+|.++.. .|++++|+.+++++++. .|.. ..+++.+| .+|..
T Consensus 86 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~-~~~~----~~~~~~l~~~~~~~-- 155 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAV--DRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRP-TTTD----PKVFYELGQAYYYN-- 155 (272)
T ss_dssp HTTCHHHHHHHHHHHH--HHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHGGGCCS-SCCC----HHHHHHHHHHHHHT--
T ss_pred HcccHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhc-CCCc----HHHHHHHHHHHHHH--
Confidence 9999999999999999 8999999999988877655 79999999999999995 3332 67899999 77654
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhc---CCC----CHHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLKLE---GGS----NLKGW 355 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~l~---P~~----~~~~~ 355 (446)
+++++|+..|++++ +++|+++.+++.+|.++...|+ +++|+..|++++++. |+. -..++
T Consensus 156 ----------~~~~~A~~~~~~a~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 156 ----------KEYVKADSSFVKVL-ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp ----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 36899999999999 9999999999999999999999 999999999999987 541 02689
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
..+|.++..+|++++|+.+++++++++| ++..++-.++.+....+
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILALDP--TNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCc--cHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999 89999888777665443
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=1.4e-23 Score=214.91 Aligned_cols=310 Identities=13% Similarity=0.039 Sum_probs=232.4
Q ss_pred HHHHHhHHHHHH----hCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcC-CCC---------------CCc
Q 013299 64 RAVELLPELWKL----ADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGG-ETC---------------PPN 123 (446)
Q Consensus 64 ~a~~~l~~~~~~----~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~-~~~---------------~~~ 123 (446)
.+...+|.+|.. .+++++|+.+|+++++.. ++. ....++.++..+.. ... .+.
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 112 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTP----AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQ 112 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 577888999999 999999999999999872 222 24566776665311 110 000
Q ss_pred cccccCccccC----CCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCcH
Q 013299 124 LRSQMGSSFVP----RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRK 195 (446)
Q Consensus 124 ~~~~~~~~~~~----~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~~~~~~A~~~~~~al~~~p~~~ 195 (446)
....++.+|.. .+++++|+..+. .+.. +.++.++..+|.++.. .+++++|++.|+++++. +++
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~-----~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~ 183 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFR-----LAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV 183 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHH-----HHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-----HHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 00223334443 567778877652 2222 4677888888888877 77888888888888765 578
Q ss_pred HHHHHHHHHHHH----CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcch
Q 013299 196 ERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQ 268 (446)
Q Consensus 196 ~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~ 268 (446)
.+++.||.+|.. .+++++|+..|++++ . ++++.+++.++.++.. ..+++++|+.+|+++++. . +
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~--~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~-~--- 254 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSA--T--SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G-N--- 254 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T-C---
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C-C---
Confidence 888888888887 788888888888888 3 3566777777766554 256788888888888773 1 1
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----RKLNAAHYYAKML 343 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a 343 (446)
+.+++.+|.+|..-. ...+++++|+.+|++++ +. +++.+++.+|.++... +++++|+..|+++
T Consensus 255 --~~a~~~lg~~y~~g~-------~~~~d~~~A~~~~~~a~-~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 255 --SIAQFRLGYILEQGL-------AGAKEPLKALEWYRKSA-EQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp --HHHHHHHHHHHHHTT-------TSSCCHHHHHHHHHHHH-TT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHH-Hc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 457777887775410 00246899999999999 65 7889999999999998 9999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 013299 344 LKLEGGSNLKGWLLMARILSAQK---RYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLA 416 (446)
Q Consensus 344 l~l~P~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~ 416 (446)
++. ++ ..++.++|.++...| ++++|+.+|+++++. +++.+++++|.++.. .+++++|+..|+++++
T Consensus 323 ~~~--~~-~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 323 AEQ--GD-ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHT--TC-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred Hhc--CC-HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 876 45 489999999999866 899999999999975 467899999999999 8999999999999987
Q ss_pred H
Q 013299 417 A 417 (446)
Q Consensus 417 l 417 (446)
.
T Consensus 396 ~ 396 (490)
T 2xm6_A 396 Q 396 (490)
T ss_dssp T
T ss_pred C
Confidence 5
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6e-26 Score=210.08 Aligned_cols=208 Identities=14% Similarity=0.079 Sum_probs=184.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc-------HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR-------KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
.++.++..+|.++...|++++|+..|++++.++|++ +.+|+.+|.++...|++++|+..|++++ .++|+ .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~-~ 112 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL--TEHRT-A 112 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCC-H
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--hcCch-h
Confidence 446678889999999999999999999999998887 7999999999999999999999999999 78887 2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
..+ ...|++++|+..+++++.. .|. ...++..+|.++... |++++|+..|++++ +
T Consensus 113 ~~~--------~~~~~~~~a~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~a~-~ 167 (258)
T 3uq3_A 113 DIL--------TKLRNAEKELKKAEAEAYV-NPE----KAEEARLEGKEYFTK-----------SDWPNAVKAYTEMI-K 167 (258)
T ss_dssp HHH--------HHHHHHHHHHHHHHHHHHC-CHH----HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-H
T ss_pred HHH--------HHHhHHHHHHHHHHHHHHc-Ccc----hHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-h
Confidence 222 2246789999999999994 332 367899999998664 57899999999999 9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc------CCC
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT------GKW 385 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~ 385 (446)
.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+ |
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p-- 244 (258)
T 3uq3_A 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS-- 244 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCC--
Confidence 999999999999999999999999999999999999999 5999999999999999999999999999999 8
Q ss_pred CcHHHHHHHHHH
Q 013299 386 EQGELLRTKAKV 397 (446)
Q Consensus 386 ~~~~~~~~~a~~ 397 (446)
++..++..++.+
T Consensus 245 ~~~~~~~~l~~~ 256 (258)
T 3uq3_A 245 SAREIDQLYYKA 256 (258)
T ss_dssp THHHHHHHHHHT
T ss_pred chHHHHHHHHHh
Confidence 788877776654
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=2e-25 Score=213.44 Aligned_cols=257 Identities=16% Similarity=0.037 Sum_probs=217.7
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWD-PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~-~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
.|++++|+..+ +.+....|++ .++...++.++...|++++|+..++.. +|.+..++..++..+...|++++
T Consensus 12 ~g~y~~ai~~~-----~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 12 IGSYQQCINEA-----QRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp TTCHHHHHHHH-----HHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHH-----HhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHH
Confidence 67899998764 3444555665 467788999999999999999988763 67788899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHH
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFD 293 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 293 (446)
|+..+++++....+|+++.+++.+|.++. ..|++++|+..+++ +++ ..++..+|.++..+
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~-----~~~-----~~~~~~l~~~~~~~--------- 143 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ-----GDS-----LECMAMTVQILLKL--------- 143 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT-----CCS-----HHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC-----CCC-----HHHHHHHHHHHHHC---------
Confidence 99999999831247999999988877755 47999999999987 333 56889999998665
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~--~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
|++++|+..|++++ +.+|++.......|++ +...|++++|+..|+++++.+|++ ..+|+++|.++..+|++++|
T Consensus 144 --g~~~~A~~~l~~~~-~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 144 --DRLDLARKELKKMQ-DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-LLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp --TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred --CCHHHHHHHHHHHH-hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHH
Confidence 57899999999999 9999997555544433 334589999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHhhhhhhc
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG-AVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~e-A~~~~~~~l~l~~~~~~~~ 425 (446)
+..++++++.+| +++.+++++|.++...|+.++ +.+.+++++++.|+++...
T Consensus 220 ~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 220 EGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999 999999999999999999987 4688899999998765543
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=5.6e-26 Score=207.54 Aligned_cols=169 Identities=20% Similarity=0.119 Sum_probs=127.0
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC-----------CChHHHHHHHHHHh
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA-----------GEDLVALNLLRTLL 222 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~eA~~~~~~al 222 (446)
++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+|+++|.++... |++++|+..|++++
T Consensus 32 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 111 (217)
T 2pl2_A 32 LKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE 111 (217)
T ss_dssp HTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH
Confidence 3445788889999999999999999999999999999999999999999999998 77777777777777
Q ss_pred cCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHH
Q 013299 223 SGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKAL 302 (446)
Q Consensus 223 ~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl 302 (446)
+++|+++.+++.+|. ++.. .|++++|+
T Consensus 112 --~~~P~~~~~~~~lg~----------------------------------------~~~~-----------~g~~~~A~ 138 (217)
T 2pl2_A 112 --RVNPRYAPLHLQRGL----------------------------------------VYAL-----------LGERDKAE 138 (217)
T ss_dssp --HHCTTCHHHHHHHHH----------------------------------------HHHH-----------TTCHHHHH
T ss_pred --HhCcccHHHHHHHHH----------------------------------------HHHH-----------cCChHHHH
Confidence 667776665554443 3322 23567788
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
..|++++ +++ +++.+++++|.++..+|++++|+..|+++++++|++ ..++.++|.++..+|++++|+..++++
T Consensus 139 ~~~~~al-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 139 ASLKQAL-ALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHH-HHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTC--------------
T ss_pred HHHHHHH-hcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888 888 888888888888888888888888888888888888 488888888888888888888888765
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=6.5e-23 Score=212.07 Aligned_cols=379 Identities=12% Similarity=-0.002 Sum_probs=275.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.++|...+.. .+.|++++|...|+++++. .|.+ ...+...+.++.+.|++++|+..|+++
T Consensus 13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--------~P~~-----------~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 13 LDAWSILIRE-AQNQPIDKARKTYERLVAQ--------FPSS-----------GRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--------CCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5677777774 7789999999999999986 4553 246677788899999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhh-cCCC-------------------CCCccc-c-ccCccccC---------CCcH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYC-GGET-------------------CPPNLR-S-QMGSSFVP---------RNNI 138 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~-~~~~-------------------~~~~~~-~-~~~~~~~~---------~~~~ 138 (446)
+.. .|.. . +....+.+.... +... .++... + ....+... +|++
T Consensus 73 l~~----~p~~-~-lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 73 LMK----VLHI-D-LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp TTT----CCCH-H-HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred Hhc----CCCh-H-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 999 3321 1 222222221111 0000 000000 0 01111111 4566
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHH-----------------------------------------------
Q 013299 139 EEAILLLMILLRKVALKRIEWDP--SILDHLSF----------------------------------------------- 169 (446)
Q Consensus 139 ~eA~~~l~~~~~~~~l~~~p~~~--~~~~~lg~----------------------------------------------- 169 (446)
++|..++ +.++. .|... ..|.....
T Consensus 147 ~~a~~~y-----~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 147 TAVRRVY-----QRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHH-----HHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHHHH-----HHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 7777665 45556 46542 22211100
Q ss_pred ----------------HHHh------cCCH----HHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-------CCChH----
Q 013299 170 ----------------AFSI------AGDL----SSLATQIEELLPGIINRKERYHILALCYYG-------AGEDL---- 212 (446)
Q Consensus 170 ----------------~l~~------~~~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~~---- 212 (446)
+... .++. .+++..|++++..+|+++++|+.+|..+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 0000 0111 367789999999999999999999999987 79987
Q ss_pred ---HHHHHHHHHhcCC-CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 213 ---VALNLLRTLLSGS-EDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 213 ---eA~~~~~~al~~~-~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
+|+..|++++ . .+|+++.+++..+.+.. ..|++++|...|+++++. +|.. ...+|..+|.++..
T Consensus 301 ~~~~A~~~~~~Al--~~~~p~~~~l~~~~~~~~~-~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~~~~~~~~----- 368 (530)
T 2ooe_A 301 FSDEAANIYERAI--STLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAI-EDID---PTLVYIQYMKFARR----- 368 (530)
T ss_dssp HHHHHHHHHHHHT--TTTCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHS-SSSC---HHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHH--HHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHhCc-cccC---chHHHHHHHHHHHH-----
Confidence 9999999999 7 79999999988877654 468999999999999994 4432 13578888877644
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC
Q 013299 289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~ 367 (446)
.|++++|+..|++|+ +..|.++..+...+.+ +...|++++|...|+++++.+|++ ..+|..++.++..+|+
T Consensus 369 ------~~~~~~A~~~~~~Al-~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~-~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 369 ------AEGIKSGRMIFKKAR-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNE 440 (530)
T ss_dssp ------HHHHHHHHHHHHHHH-TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTTTC
T ss_pred ------hcCHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhCCC
Confidence 467899999999999 9999998888877766 346999999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccccCC
Q 013299 368 YEDAETILNAALDQTGKW--EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVSTKK 445 (446)
Q Consensus 368 ~~eA~~~~~~al~~~p~~--~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (446)
+++|..+|++++...|.+ ....+|..........|+.+.+...++++++..|+..+.. .+...-+|-++...-
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~~~-----~~~~~~~r~~~~~~~ 515 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK-----ETALLVDRYKFMDLY 515 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHTTC-----HHHHHGGGTCBTTBC
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhccCc-----hHHHHHHHHHhcccC
Confidence 999999999999987621 1244787888889999999999999999999999654332 233444455555443
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=228.17 Aligned_cols=314 Identities=12% Similarity=0.016 Sum_probs=245.8
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+.+++.+|.++...|++++|+..|+++++. .|... .....++..+|.++...|++++|+..|+++
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 73 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV--------GTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CcccH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 456788999999999999999999999987 23321 123467888899999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
+.. .+. ....|..+.++..+|.
T Consensus 74 l~~----~~~------------------------------------------------------~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 74 LTL----ART------------------------------------------------------IGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHH----HHH------------------------------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHH----HHh------------------------------------------------------ccccHHHHHHHHHHHH
Confidence 876 110 0001223556788999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCc------HHHHHHHHHHHHHCCC--------------------hHHHHHHHHHHhc
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINR------KERYHILALCYYGAGE--------------------DLVALNLLRTLLS 223 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~eA~~~~~~al~ 223 (446)
++...|++++|+..|++++.+.|.. +.+++.+|.++...|+ +++|+..|++++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al- 174 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL- 174 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH-
Confidence 9999999999999999998886654 4489999999999999 999999999988
Q ss_pred CCC------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhchhHhhhhhhhchHHHHH
Q 013299 224 GSE------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRAT 296 (446)
Q Consensus 224 ~~~------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (446)
.+ .|....++..+|.++. ..|++++|+.+++++++..+... ......++..+|.++... |
T Consensus 175 -~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----------g 241 (406)
T 3sf4_A 175 -SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----------G 241 (406)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHHHHH-HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------T
T ss_pred -HHHHhccCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-----------C
Confidence 44 3333446666666654 46899999999999998654321 223456888899988664 5
Q ss_pred HHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHc
Q 013299 297 RQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ 365 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~ 365 (446)
++++|+..|++++ ++.|+. +.+++.+|.++...|++++|+.+|++++.+.+... ..++..+|.++..+
T Consensus 242 ~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 242 EFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH-HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 7899999999999 998877 78999999999999999999999999999876541 36889999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013299 366 KRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
|++++|+.++++++++.+.. ....++..+|.++...|+...+...+
T Consensus 321 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 99999999999999874311 34778899999999999885444333
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=2.5e-25 Score=208.31 Aligned_cols=250 Identities=10% Similarity=-0.030 Sum_probs=209.7
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 013299 130 SSFVPRNNIEEAILLLMILLRKVALKR----IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY 205 (446)
Q Consensus 130 ~~~~~~~~~~eA~~~l~~~~~~~~l~~----~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 205 (446)
.....++++++|+..+ +.++.. .|.++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++
T Consensus 13 ~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 13 VPLQPTLQQEVILARM-----EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 87 (275)
T ss_dssp CCCCCCHHHHHHHHHH-----HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred eccCccchHHHHHHHH-----HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4556678999999986 445555 3567889999999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 206 YGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
...|++++|+..|++++ ..+|+++.++..+|.++.. .|++++|+.+++++++..|.+ ......++.++
T Consensus 88 ~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~---- 155 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVL--ELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPND-----PFRSLWLYLAE---- 155 (275)
T ss_dssp HHTTCHHHHHHHHHHHH--HHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHH----
T ss_pred HHccCHHHHHHHHHHHH--hcCccccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHH----
Confidence 99999999999999999 8999999999988877655 799999999999999965544 22333333332
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARIL 362 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~la~~~ 362 (446)
..|++++|+..|++++ ...|++...+. ++.++...++.++|+..+++++..+|... ..+|..+|.++
T Consensus 156 --------~~~~~~~A~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 156 --------QKLDEKQAKEVLKQHF-EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp --------HHHCHHHHHHHHHHHH-HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred --------HhcCHHHHHHHHHHHH-hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 2467999999999999 99999977655 77777888999999999999999887430 38899999999
Q ss_pred HHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013299 363 SAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
..+|++++|+.++++++..+| ++.. ..+.++...|++++|++.|
T Consensus 226 ~~~g~~~~A~~~~~~al~~~p--~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANNV--HNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTCC--TTCH---HHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCCc--hhHH---HHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999 5544 3477888999999999988
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=4.1e-25 Score=202.99 Aligned_cols=221 Identities=16% Similarity=0.086 Sum_probs=172.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~ 238 (446)
..+..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++ ..+|+++.++..++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL--ELDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCcchHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999 89999999988887
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
.++.. .|++++|+.+++++++..+.+ ..++..+|.++... |++++|+..|++++ +.+|+++.
T Consensus 99 ~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~ 160 (243)
T 2q7f_A 99 NVYVV-KEMYKEAKDMFEKALRAGMEN-----GDLFYMLGTVLVKL-----------EQPKLALPYLQRAV-ELNENDTE 160 (243)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHTCCS-----HHHHHHHHHHHHHT-----------SCHHHHHHHHHHHH-HHCTTCHH
T ss_pred HHHHH-hccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCccHH
Confidence 77554 688999999999999865443 46788888888654 56889999999999 99999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+++.+|.++...|++++|+..+++++..+|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..++..++.+.
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKALEMLDKAIDIQP--DHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT--TCHHHHHHHTC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHHccCc--chHHHHHHHHHHH
Confidence 99999999999999999999999999999998 48999999999999999999999999999999 8888888877766
Q ss_pred HHhC
Q 013299 399 LVQG 402 (446)
Q Consensus 399 ~~~g 402 (446)
...|
T Consensus 238 ~~~~ 241 (243)
T 2q7f_A 238 HHHH 241 (243)
T ss_dssp ----
T ss_pred hhcc
Confidence 5444
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=5.9e-25 Score=194.28 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
.+++.+|+++|.++...|++++|++.|+++++++|+++.+|+.+|.++...|++++|+..+++++ ..+|+++.++...
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~ 79 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV--VLDTTSAEAYYIL 79 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCchhHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777777777777 6777776665544
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
+.++.. .+++++|+..+.+++ .++|+++
T Consensus 80 ~~~~~~---------------------------------------------------~~~~~~a~~~~~~a~-~~~~~~~ 107 (184)
T 3vtx_A 80 GSANFM---------------------------------------------------IDEKQAAIDALQRAI-ALNTVYA 107 (184)
T ss_dssp HHHHHH---------------------------------------------------TTCHHHHHHHHHHHH-HHCTTCH
T ss_pred HHHHHH---------------------------------------------------cCCHHHHHHHHHHHH-HhCccch
Confidence 333211 134567778888888 8888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+++.+|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|++|++++|
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 888888888888888888888888888888888 48888888888888888888888888888888
No 40
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=5.9e-25 Score=224.59 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHH
Q 013299 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN 216 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 216 (446)
+++++..+ +......|.++.++..+|.++...|++ ++|+++|+++++++|+++++|+.+|.+|...|++++|+.
T Consensus 84 ~~~al~~l-----~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQM-----EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHH-----HHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHH-----HHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44555443 345667788899999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHH
Q 013299 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (446)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (446)
.|++++ .++|+ ..++..+|.++..... .. . .++.|
T Consensus 159 ~~~~al--~~~p~-~~~~~~lg~~~~~~~~-----------------~~--------------~-----------~~~~g 193 (474)
T 4abn_A 159 CFSGAL--THCKN-KVSLQNLSMVLRQLQT-----------------DS--------------G-----------DEHSR 193 (474)
T ss_dssp HHHHHH--TTCCC-HHHHHHHHHHHTTCCC-----------------SC--------------H-----------HHHHH
T ss_pred HHHHHH--hhCCC-HHHHHHHHHHHHHhcc-----------------CC--------------h-----------hhhhh
Confidence 999999 88888 5677766655433110 00 0 02346
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHc
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--------RKLNAAHYYAKMLLKLEG---GSNLKGWLLMARILSAQ 365 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~al~l~P---~~~~~~~~~la~~~~~~ 365 (446)
++++|+..|++++ +++|+++.+|+++|.++..+ |++++|+..|+++++++| ++ ..+|.++|.++..+
T Consensus 194 ~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~lg~~~~~~ 271 (474)
T 4abn_A 194 HVMDSVRQAKLAV-QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN-PDLHLNRATLHKYE 271 (474)
T ss_dssp HHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC-HHHHHHHHHHHHHc
Confidence 7899999999999 99999999999999999999 999999999999999999 88 59999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
|++++|+.+|+++++++| ++..++..++.++...|++++|++.+.++
T Consensus 272 g~~~~A~~~~~~al~l~p--~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 272 ESYGEALEGFSQAAALDP--AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999 89999999999999999999999988655
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=220.77 Aligned_cols=283 Identities=14% Similarity=0.011 Sum_probs=231.6
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013299 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (446)
Q Consensus 64 ~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~ 143 (446)
.++...|.++...|++++|+..|+++++. .|.+..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~----------------------------------------- 44 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLK----------------------------------------- 44 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHH-----------------------------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHH-----------------------------------------
Confidence 35667788899999999999999999887 332110
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHHH
Q 013299 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNL 217 (446)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~ 217 (446)
.-..++..+|.++...|++++|+..|++++.+ .|..+.+++.+|.++...|++++|+..
T Consensus 45 ---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 109 (406)
T 3sf4_A 45 ---------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC 109 (406)
T ss_dssp ---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00245678899999999999999999998776 566688999999999999999999999
Q ss_pred HHHHhcCCCCCCC------hHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHHcCC-Ccchhh
Q 013299 218 LRTLLSGSEDPKC------LPALLIASKICGEYPDL--------------------AEEGATFASRALECLGD-GCDQME 270 (446)
Q Consensus 218 ~~~al~~~~~P~~------~~a~~~~~~~~~~~~~~--------------------~~eA~~~~~~al~~~~~-~~~~~~ 270 (446)
+++++ .+.|+. ..++..+|.++.. .|+ +++|+.+++++++.... .+....
T Consensus 110 ~~~al--~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 186 (406)
T 3sf4_A 110 CQRHL--DISRELNDKVGEARALYNLGNVYHA-KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ 186 (406)
T ss_dssp HHHHH--HHHHHHTCHHHHHHHHHHHHHHHHH-HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH--HHHHhcccccchHHHHHHHHHHHHH-cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHH
Confidence 99999 676653 3366666666544 688 99999999999886432 122344
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLL 344 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------a~~~lg~~~~~~~~~~~A~~~~~~al 344 (446)
..++..+|.++... |++++|+..|++++ ++.|+... +++++|.++..+|++++|+.++++++
T Consensus 187 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 187 GRAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHHHHHHH-----------TBHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 67888899988664 57899999999999 98776654 89999999999999999999999999
Q ss_pred hhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 345 KLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 345 ~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
.+.|+.. ..++..+|.++..+|++++|+.+++++++..++.. ...++..+|.++..+|++++|+..|++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9987651 26888999999999999999999999998865211 26788999999999999999999999999
Q ss_pred HHHhhh
Q 013299 416 AALQVQ 421 (446)
Q Consensus 416 ~l~~~~ 421 (446)
++.+..
T Consensus 335 ~~~~~~ 340 (406)
T 3sf4_A 335 EISREV 340 (406)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998653
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=7.8e-26 Score=224.97 Aligned_cols=285 Identities=13% Similarity=-0.009 Sum_probs=216.7
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 142 (446)
...+..+|..+...|++++|+..|+++++. +|.+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~--------------------------------------- 84 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRT--------------------------------------- 84 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhH---------------------------------------
Confidence 345566778888888888888888888876 3321100
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHH
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALN 216 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~ 216 (446)
-..++..+|.++...|++++|+..|++++.+ .|....+++.+|.++...|++++|+.
T Consensus 85 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (411)
T 4a1s_A 85 -----------------LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147 (411)
T ss_dssp -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0134566777777777777777777777766 56667777778888888888888888
Q ss_pred HHHHHhcCCC------CCCChHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHcCC-CcchhhhH
Q 013299 217 LLRTLLSGSE------DPKCLPALLIASKICGEYPDL-----------------AEEGATFASRALECLGD-GCDQMEST 272 (446)
Q Consensus 217 ~~~~al~~~~------~P~~~~a~~~~~~~~~~~~~~-----------------~~eA~~~~~~al~~~~~-~~~~~~~~ 272 (446)
.|++++ .+ .|....++..+|.++.. .|+ +++|+.+++++++..+. ........
T Consensus 148 ~~~~al--~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 148 CCERHL--TLARQLGDRLSEGRALYNLGNVYHA-KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp HHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHH--HHHHHhhchHHHHHHHHHHHHHHHH-cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777 55 44455566666655443 566 77888888887775321 11123456
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------a~~~lg~~~~~~~~~~~A~~~~~~al~l 346 (446)
++..+|.++... |++++|+.+|++++ ++.|++.. +++++|.++..+|++++|+.+|++++.+
T Consensus 225 ~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 225 ACGNLGNTYYLL-----------GDFQAAIEHHQERL-RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----------CChHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888899988664 57899999999999 98876544 8999999999999999999999999999
Q ss_pred cCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 347 EGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 347 ~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
.|+.. ..++..+|.++..+|++++|+.++++++...++. ....+++.+|.++..+|++++|+..|++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88531 3788999999999999999999999999875510 22568899999999999999999999999999
Q ss_pred Hhhhh
Q 013299 418 LQVQT 422 (446)
Q Consensus 418 ~~~~~ 422 (446)
.+...
T Consensus 373 ~~~~~ 377 (411)
T 4a1s_A 373 AXXXX 377 (411)
T ss_dssp CCHHH
T ss_pred Hhhcc
Confidence 87643
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=1.6e-23 Score=197.10 Aligned_cols=235 Identities=14% Similarity=0.064 Sum_probs=205.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHhcCCCCCCChH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
.|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++++|.++.. .|++++|+..|++++ ..+ ++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~--~~~--~~~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC--DLN--YSN 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTT--CHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH--HCC--CHH
Confidence 478999999999999999999999999999998 8899999999999999 999999999999999 554 788
Q ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 233 ALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 233 a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
+++.+|.++.. ..+++++|+.+|+++++. . + +.+++.+|.+|.... ...+++++|+.+|++++
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~-~-----~~a~~~lg~~~~~~~-------~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-K-Y-----AEGCASLGGIYHDGK-------VVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T-C-----HHHHHHHHHHHHHCS-------SSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-C-C-----ccHHHHHHHHHHcCC-------CcccCHHHHHHHHHHHH
Confidence 88888877554 168999999999999984 2 2 578999999986500 00246899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhh
Q 013299 310 RSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQ 381 (446)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~ 381 (446)
+.+ ++.+++++|.++.. .+++++|+.+|+++++. ++ ..++..+|.++.. .+++++|+.+++++++.
T Consensus 142 -~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 -DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KD-SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp -HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred -hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 876 78999999999999 99999999999999987 45 4899999999999 99999999999999987
Q ss_pred cCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhh
Q 013299 382 TGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 382 ~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.| ..+++++|.++.. .|++++|++.|++++++.|..
T Consensus 216 ~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 216 EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 55 6789999999999 999999999999999997643
No 44
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.2e-23 Score=202.29 Aligned_cols=243 Identities=12% Similarity=-0.003 Sum_probs=149.4
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-------CCCh-------HHHHHHHHHHhcCC-CCCCChHHHHHHHHHHh
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYG-------AGED-------LVALNLLRTLLSGS-EDPKCLPALLIASKICG 242 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~eA~~~~~~al~~~-~~P~~~~a~~~~~~~~~ 242 (446)
++|+..|++++..+|+++++|+++|..+.. .|++ ++|+..|++++ . ++|++..++...+.+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl--~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI--STLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH--TTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH--HHhCcccHHHHHHHHHHHH
Confidence 344555555555555555555555555442 3443 55555555555 4 45555555554444332
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013299 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
..|++++|...|+++++. +|... ..+|..+|.++.. .|++++|+..|++++ +.+|.++.++..
T Consensus 111 -~~~~~~~A~~~~~~al~~-~p~~~---~~~~~~~~~~~~~-----------~~~~~~A~~~~~~a~-~~~p~~~~~~~~ 173 (308)
T 2ond_A 111 -SRMKYEKVHSIYNRLLAI-EDIDP---TLVYIQYMKFARR-----------AEGIKSGRMIFKKAR-EDARTRHHVYVT 173 (308)
T ss_dssp -HTTCHHHHHHHHHHHHTS-SSSCT---HHHHHHHHHHHHH-----------HHCHHHHHHHHHHHH-TSTTCCTHHHHH
T ss_pred -hcCCHHHHHHHHHHHHhc-cccCc---cHHHHHHHHHHHH-----------hcCHHHHHHHHHHHH-hcCCCCHHHHHH
Confidence 234555555555555552 22210 1145555555433 345777888888888 788877777766
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---cCCCCcHHHHHHHHHHH
Q 013299 323 LSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ---TGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 323 lg~~~~~-~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~~~~a~~~ 398 (446)
.+.+... .|++++|+..|+++++++|++ ..+|..+|.++..+|++++|...|++++.. .|+ +...+|...+..+
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~-~~~~l~~~~~~~~ 251 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG-GCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHH
Confidence 6655443 578888888888888888887 488888888888888888888888888874 441 2566777777888
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccccCCC
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVSTKKP 446 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (446)
...|++++|...+++++++.|+..+.. ...+...+-++....|
T Consensus 252 ~~~g~~~~a~~~~~~a~~~~p~~~~~~-----~~~~~~~r~~~l~~~P 294 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTAFREEYEGK-----ETALLVDRYKFMDLYP 294 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHHTTTTTSSC-----HHHHHHTTTCBTTBCS
T ss_pred HHcCCHHHHHHHHHHHHHHcccccccc-----hHHHHHHHHHhcccCC
Confidence 888888888888888888877644322 2244455555555444
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=4.7e-24 Score=188.49 Aligned_cols=173 Identities=12% Similarity=0.052 Sum_probs=157.4
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhH
Q 013299 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMEST 272 (446)
Q Consensus 193 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~ 272 (446)
+++.+|+++|.++...|++++|+..|++++ +++|+++.++..+|.++..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~----------------------------- 51 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL--KADPNNVETLLKLGKTYMD----------------------------- 51 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-----------------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-----------------------------
Confidence 578899999999999999999999999999 8999998877766544322
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 352 (446)
.|++++|+..+++++ ..+|+++.++..+|.++...++++.|+..+.+++.++|++ .
T Consensus 52 ----------------------~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~ 107 (184)
T 3vtx_A 52 ----------------------IGLPNDAIESLKKFV-VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-A 107 (184)
T ss_dssp ----------------------TTCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred ----------------------CCCHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-h
Confidence 134678889999999 9999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
.++..+|.++..+|++++|+..|+++++.+| +++.+++++|.++..+|++++|++.|++++++.|++.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKP--GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcc--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999999999999999 8999999999999999999999999999999987653
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=1.1e-23 Score=190.61 Aligned_cols=218 Identities=17% Similarity=0.023 Sum_probs=194.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
..|+++.++..+|.++...|++++|++.|++++..+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL--SIKPDSAEINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH--HhCCCChHHHH
Confidence 4588899999999999999999999999999999999999999999999999999999999999999 89999999988
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 236 IASKICGEYP-DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 236 ~~~~~~~~~~-~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
.++.++. .. |++++|+.+++++++ .+.++ ....++..+|.++... |++++|+..|++++ +.+|
T Consensus 81 ~l~~~~~-~~~~~~~~A~~~~~~~~~-~~~~~--~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~ 144 (225)
T 2vq2_A 81 NYGWFLC-GRLNRPAESMAYFDKALA-DPTYP--TPYIANLNKGICSAKQ-----------GQFGLAEAYLKRSL-AAQP 144 (225)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHHHHHT-STTCS--CHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHST
T ss_pred HHHHHHH-HhcCcHHHHHHHHHHHHc-CcCCc--chHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCC
Confidence 8877654 57 899999999999998 33222 2357888899988664 56899999999999 9999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P-~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
+++.+++.+|.++...|++++|+..+++++.++| ++ ..++..++.++...|++++|..+++.+++.+| ++..+...
T Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~ 221 (225)
T 2vq2_A 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALGNAQAAYEYEAQLQANFP--YSEELQTV 221 (225)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 9999999999999999999999999999999999 88 48899999999999999999999999999999 78776654
Q ss_pred H
Q 013299 394 K 394 (446)
Q Consensus 394 ~ 394 (446)
+
T Consensus 222 l 222 (225)
T 2vq2_A 222 L 222 (225)
T ss_dssp H
T ss_pred h
Confidence 3
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=7.3e-25 Score=209.78 Aligned_cols=281 Identities=14% Similarity=0.012 Sum_probs=203.9
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013299 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (446)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~ 144 (446)
.+...|..+...|++++|+..|+++++. +|.+...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~----------------------------------------- 41 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKT----------------------------------------- 41 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHH-----------------------------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh----CcccHHH-----------------------------------------
Confidence 4556678889999999999999999887 3322100
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 013299 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLL 218 (446)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 218 (446)
...++..+|.++...|++++|++.|++++.+ .|..+.++..+|.++...|++++|+..+
T Consensus 42 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 106 (338)
T 3ro2_A 42 ---------------LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCC 106 (338)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0224455666666666666666666666555 4445566777777777777777777777
Q ss_pred HHHhcCCCCCCC------hHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHHcCC-Ccchhhh
Q 013299 219 RTLLSGSEDPKC------LPALLIASKICGEYPDL--------------------AEEGATFASRALECLGD-GCDQMES 271 (446)
Q Consensus 219 ~~al~~~~~P~~------~~a~~~~~~~~~~~~~~--------------------~~eA~~~~~~al~~~~~-~~~~~~~ 271 (446)
++++ .+.|+. ..++..++.++.. .|+ +++|+.+++++++.... .+.....
T Consensus 107 ~~al--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (338)
T 3ro2_A 107 QRHL--DISRELNDKVGEARALYNLGNVYHA-KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183 (338)
T ss_dssp HHHH--HHHHHTTCHHHHHHHHHHHHHHHHH-HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHH--HHHHHhcCchHHHHHHHHHHHHHHH-cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 7766 444432 1244444444333 455 77777777777764321 1122345
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~------a~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
.++..+|.++... |++++|+..+++++ ++.|.... +++++|.++...|++++|+..+++++.
T Consensus 184 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 184 RAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788888888654 57899999999999 88765433 899999999999999999999999999
Q ss_pred hcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 346 LEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 346 l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
+.|+.. ..++..+|.++..+|++++|+.+++++++..|.. ....++..+|.++...|++++|+..|+++++
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 877641 2688899999999999999999999999876511 1256888999999999999999999999999
Q ss_pred HHhh
Q 013299 417 ALQV 420 (446)
Q Consensus 417 l~~~ 420 (446)
+.++
T Consensus 332 ~~~~ 335 (338)
T 3ro2_A 332 ISRE 335 (338)
T ss_dssp C---
T ss_pred HHHh
Confidence 8864
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=5.9e-24 Score=195.21 Aligned_cols=218 Identities=12% Similarity=0.063 Sum_probs=177.3
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a 273 (446)
.+.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+..++++++..+.+ ..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAI--EENKEDAIPYINFANLLSS-VNELERALAFYDKALELDSSA-----ATA 93 (243)
T ss_dssp --------------------CCTTHHHHH--TTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----HHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcc-----hHH
Confidence 45678999999999999999999999999 8999999999988877654 789999999999999965443 578
Q ss_pred HHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
+..+|.++... |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++.++|++ ..
T Consensus 94 ~~~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 160 (243)
T 2q7f_A 94 YYGAGNVYVVK-----------EMYKEAKDMFEKAL-RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-TE 160 (243)
T ss_dssp HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-HH
Confidence 88999988664 57899999999999 9999999999999999999999999999999999999999 59
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhh
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYK 433 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~ 433 (446)
++..+|.++...|++++|+.+++++++..| ++..+++.+|.++...|++++|+..|++++++. |....
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------p~~~~ 228 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ----------PDHML 228 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC----------TTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC----------cchHH
Confidence 999999999999999999999999999999 899999999999999999999999999999997 55566
Q ss_pred HHhhhhccccC
Q 013299 434 VYFMRKRVSTK 444 (446)
Q Consensus 434 ~~~~~~~~~~~ 444 (446)
+++.+.++...
T Consensus 229 ~~~~~~~l~~~ 239 (243)
T 2q7f_A 229 ALHAKKLLGHH 239 (243)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHHHHhh
Confidence 66666665543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=8.7e-24 Score=195.76 Aligned_cols=216 Identities=14% Similarity=0.024 Sum_probs=163.3
Q ss_pred cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 156 RIEWD-PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 156 ~~p~~-~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
.+|.+ +.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~ 108 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL--ASDSRNARVL 108 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCcHHHH
Confidence 44555 77889999999999999999999999999999999999999999999999999999999999 7889888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
..++.++.. .|++++|+.+++++++ .+..+ ....++..+|.++... |++++|+..|++++ +.+|
T Consensus 109 ~~la~~~~~-~g~~~~A~~~~~~~~~-~~~~~--~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~~ 172 (252)
T 2ho1_A 109 NNYGGFLYE-QKRYEEAYQRLLEASQ-DTLYP--ERSRVFENLGLVSLQM-----------KKPAQAKEYFEKSL-RLNR 172 (252)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTT-CTTCT--THHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCS
T ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHh-CccCc--ccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hcCc
Confidence 777666544 5777777777777776 11111 1245666677666543 45677777777777 7777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+++.+++.+|.++...|++++|+..+++++..+|++ ..++..++.++...|++++|..+++++++..| ++..++.
T Consensus 173 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~ 247 (252)
T 2ho1_A 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP--GSLEYQE 247 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TSHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CCHHHHH
Confidence 777777777777777777777777777777777776 47777777777777777777777777777777 5655443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=2.1e-23 Score=193.13 Aligned_cols=212 Identities=19% Similarity=0.109 Sum_probs=193.9
Q ss_pred CCCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc
Q 013299 189 PGIINR-KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD 267 (446)
Q Consensus 189 ~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~ 267 (446)
..+|.+ +.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+.+++++++..|.+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~-- 104 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL--EIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRN-- 104 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC--
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH--hcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCc--
Confidence 456776 8899999999999999999999999999 8999999999988877655 789999999999999965443
Q ss_pred hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 268 QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 268 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
..++..+|.++... |++++|+..|++++ . .+|.++.+++.+|.++...|++++|+..+++++.
T Consensus 105 ---~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 105 ---ARVLNNYGGFLYEQ-----------KRYEEAYQRLLEAS-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp ---HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHT-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH-----------hHHHHHHHHHHHHH-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57889999988664 57899999999999 9 8899999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++|++ ..++..+|.++..+|++++|+.+++++++..| ++..++..++.++...|++++|...+++++++.|++..
T Consensus 170 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 170 LNRNQ-PSVALEMADLLYKEREYVPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred cCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 99999 59999999999999999999999999999999 89999999999999999999999999999999876544
No 51
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=4.8e-24 Score=227.28 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=104.5
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013299 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (446)
Q Consensus 191 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~ 270 (446)
.|+++++|++||.++..+|++++|+..|+++| +++|+++.+++.+|.++..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl--~l~P~~~~a~~nLg~~l~~--------------------------- 55 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQ--------------------------- 55 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHH---------------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH---------------------------
Confidence 46666666666666666666666666666666 5666665555444333211
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
.|++++|+..|++|+ +++|+++.+++++|.++..+|++++|+..|++|++++|++
T Consensus 56 ------------------------~g~~~eA~~~~~~Al-~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 56 ------------------------QGKLQEALMHYKEAI-RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp ------------------------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ------------------------cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 123455555566666 5666666666666666666666666666666666666665
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
..+|.++|.++..+|++++|+..|++|++++| ++..++.++|.++..+|++++|.+.|++++++.|++.+
T Consensus 111 -~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~ 180 (723)
T 4gyw_A 111 -ADAHSNLASIHKDSGNIPEAIASYRTALKLKP--DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE 180 (723)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHh
Confidence 36666666666666666666666666666666 56666666666666666666666666666666655433
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=2.5e-24 Score=206.04 Aligned_cols=286 Identities=12% Similarity=0.011 Sum_probs=225.3
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
...++.+|.++...|++++|+..|+++++. .|.+. .....++..+|.++...|++++|+..|+++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 69 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQV--------GTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHD 69 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CcccH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567889999999999999999999999987 23321 123467888999999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
+.. .... ...|..+.++..+|.
T Consensus 70 l~~----~~~~------------------------------------------------------~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 70 LTL----ARTI------------------------------------------------------GDQLGEAKASGNLGN 91 (338)
T ss_dssp HHH----HHHH------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred HHH----hhcc------------------------------------------------------cccHHHHHHHHHHHH
Confidence 886 1100 001223456778888
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCc------HHHHHHHHHHHHHCCC--------------------hHHHHHHHHHHhc
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINR------KERYHILALCYYGAGE--------------------DLVALNLLRTLLS 223 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~eA~~~~~~al~ 223 (446)
++...|++++|+..|++++++.|.. ..++..+|.++...|+ +++|+..+++++
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~- 170 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL- 170 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH-
Confidence 9999999999999999988775544 3388899999999999 899999998887
Q ss_pred CCC------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHH
Q 013299 224 GSE------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (446)
Q Consensus 224 ~~~------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (446)
.+ .|....++..++.++. ..|++++|+.+++++++..+.. .......++..+|.++... |
T Consensus 171 -~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g 237 (338)
T 3ro2_A 171 -SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----------G 237 (338)
T ss_dssp -HHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----------T
T ss_pred -HHHHhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----------C
Confidence 44 2333445666666554 4688999999999998864321 1223456888889888654 5
Q ss_pred HHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHc
Q 013299 297 RQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ 365 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~ 365 (446)
++++|+..+++++ .+.|+. +.+++.+|.++..+|++++|+.++++++.+.|... ..++..+|.++..+
T Consensus 238 ~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 238 EFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 7899999999999 888776 78999999999999999999999999999876531 24888999999999
Q ss_pred cCHHHHHHHHHHHHhhcC
Q 013299 366 KRYEDAETILNAALDQTG 383 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p 383 (446)
|++++|+.++++++++.+
T Consensus 317 g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TCHHHHHHHHHHHHHC--
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 999999999999999877
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=3.6e-24 Score=228.22 Aligned_cols=173 Identities=14% Similarity=0.039 Sum_probs=154.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHH
Q 013299 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (446)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~ 235 (446)
..|+++++++++|.++..+|++++|+++|+++++++|+++.+|++||.+|..+|++++|+..|+++| +++|+++.+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al--~l~P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHH
Confidence 3599999999999999999999999999999999999999999999999999999999999999999 89999988777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
.+|.++.. .|++++|+++|++++ +++|+
T Consensus 82 nLg~~l~~---------------------------------------------------~g~~~~A~~~~~kAl-~l~P~ 109 (723)
T 4gyw_A 82 NMGNTLKE---------------------------------------------------MQDVQGALQCYTRAI-QINPA 109 (723)
T ss_dssp HHHHHHHH---------------------------------------------------TTCHHHHHHHHHHHH-HHCTT
T ss_pred HHHHHHHH---------------------------------------------------cCCHHHHHHHHHHHH-HhCCC
Confidence 66544322 235678888888889 89999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
++.+++++|.++..+|++++|+..|++|++++|++ ..+|.++|.++..+|++++|+..+++++++.|
T Consensus 110 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999998 49999999999999999999999999988776
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=3.4e-23 Score=189.53 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=177.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII-NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
|.++++++.+|.++...|++++|+..|+++++++| .++.+++++|.++...|++++|+..|++++ ..+|+++.++..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI--KKNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH--HhCcchHHHHHH
Confidence 66889999999999999999999999999999999 999999999999999999999999999999 899999999988
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQ--MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+|.++.. .|++++|+..++++++..|.+... ....++..+|.++ ...|++++|+..|++++ +++|
T Consensus 82 l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~-----------~~~~~~~~A~~~~~~al-~~~p 148 (228)
T 4i17_A 82 KSAAYRD-MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF-----------QQAGNIEKAEENYKHAT-DVTS 148 (228)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHT-TSSC
T ss_pred HHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH-----------HHhccHHHHHHHHHHHH-hcCC
Confidence 8877554 689999999999999965544211 1124566666666 35788999999999999 9999
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 315 R--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 315 ~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+ ++.+++++|.++..+| ...++++..+.+.++ ..+ .+......+.|++|+.+++++++++| ++..+..
T Consensus 149 ~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~-~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~ 218 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNK-EKY--ASEKAKADAAFKKAVDYLGEAVTLSP--NRTEIKQ 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCH-HHH--HHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHH
Confidence 9 8899999999987554 455677778877762 443 34556677889999999999999999 8888877
Q ss_pred HHHHHH
Q 013299 393 TKAKVQ 398 (446)
Q Consensus 393 ~~a~~~ 398 (446)
.++.+.
T Consensus 219 ~l~~i~ 224 (228)
T 4i17_A 219 MQDQVK 224 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=2.4e-22 Score=181.74 Aligned_cols=213 Identities=18% Similarity=0.106 Sum_probs=191.1
Q ss_pred CCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013299 190 GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (446)
Q Consensus 190 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (446)
.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+.+++++++..|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~---- 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDAL--KSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDS---- 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC----
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HhCccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCC----
Confidence 468899999999999999999999999999999 8999999999888877654 789999999999999965543
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
..++..+|.++...+ |++++|+..|++++ + .+|+++.+++.+|.++...|++++|+..+++++..+
T Consensus 76 -~~~~~~l~~~~~~~~----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 76 -AEINNNYGWFLCGRL----------NRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp -HHHHHHHHHHHHTTT----------CCHHHHHHHHHHHH-TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHHHHHHHHhc----------CcHHHHHHHHHHHH-cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 568889999886640 46899999999999 9 778889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 348 P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
|++ ..++..+|.++..+|++++|+.+++++++..|. ++...+..++.++...|+.++|...++.++++.|++..
T Consensus 144 ~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 144 PQF-PPAFKELARTKMLAGQLGDADYYFKKYQSRVEV-LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 999 599999999999999999999999999999882 36778888999999999999999999999999876544
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=1.1e-23 Score=209.37 Aligned_cols=275 Identities=13% Similarity=-0.018 Sum_probs=220.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHhcCCC------CC
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYYGAGEDLVALNLLRTLLSGSE------DP 228 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~------~P 228 (446)
.....+..+|..+...|++++|+..|+++++.+|+++ .+|+.+|.++...|++++|+..|++++ .+ +|
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~ 123 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL--TLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHccCch
Confidence 3445677899999999999999999999999999987 589999999999999999999999999 65 56
Q ss_pred CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhh------hhchHHHHHHHHHH
Q 013299 229 KCLPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKV------AITDFDRATRQAKA 301 (446)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~------~~~~~~~~~~~~eA 301 (446)
....++..+|.++. ..|++++|+.+++++++..+. .+......++..+|.++...++. ..........+++|
T Consensus 124 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 124 GEAKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 67777887777655 478999999999999986432 11234467889999999776430 00000112238999
Q ss_pred HHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH------HHHHHHHHHHHccCHH
Q 013299 302 LQALVSAARSTN------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK------GWLLMARILSAQKRYE 369 (446)
Q Consensus 302 l~~~~~al~~~~------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~------~~~~la~~~~~~g~~~ 369 (446)
+..|++++ ++. |....+++++|.++..+|++++|+.++++++.+.|+.. . ++..+|.++..+|+++
T Consensus 203 ~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 203 VEFYQENL-KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG-DRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHCcCHH
Confidence 99999998 764 44556899999999999999999999999999988652 3 8999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccc
Q 013299 370 DAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVS 442 (446)
Q Consensus 370 eA~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (446)
+|+.++++++...|+.. ...++..+|.++..+|++++|+..|++++++.+...+ .+....+|+..++++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD----RIGEARACWSLGNAH 353 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----hHHHHHHHHHHHHHH
Confidence 99999999998876211 2678899999999999999999999999999876532 233444555555443
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=2.9e-23 Score=194.22 Aligned_cols=231 Identities=15% Similarity=0.046 Sum_probs=200.7
Q ss_pred HHHhcCCHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCC
Q 013299 170 AFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYP 245 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~ 245 (446)
.+...|++++|+..|+++++. +|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..+|.++.. .
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~ 90 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLTQ-A 90 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHH-T
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHH-c
Confidence 344568899999999999998 46778999999999999999999999999999 8999999999988877654 7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
|++++|+.+++++++..|.+ ..++..+|.++... |++++|+..|++++ +++|+++.....++.
T Consensus 91 ~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTY-----NYAHLNRGIALYYG-----------GRDKLAQDDLLAFY-QDDPNDPFRSLWLYL 153 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-----THHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCChHHHHHHHH
Confidence 89999999999999965544 57899999999765 57899999999999 999999988777775
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHhCC
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW--EQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~~~~a~~~~~~g~ 403 (446)
. ...|++++|+..+++++...|++. ..|. ++.++...+++++|+..+++++...|+. ++..+++.+|.++...|+
T Consensus 154 ~-~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 154 A-EQKLDEKQAKEVLKQHFEKSDKEQ-WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSCCCS-THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred H-HHhcCHHHHHHHHHHHHhcCCcch-HHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 5 567999999999999999999984 5554 7888888999999999999999877610 236889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 013299 404 LKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 404 ~~eA~~~~~~~l~l~~~~~~ 423 (446)
+++|+..|++++++.|++..
T Consensus 231 ~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHHHHHhCCchhHH
Confidence 99999999999999875533
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.5e-22 Score=193.14 Aligned_cols=224 Identities=9% Similarity=-0.016 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHhhCC-CCCCcHHHHHHHHH
Q 013299 139 EEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI-------AGDL-------SSLATQIEELLP-GIINRKERYHILAL 203 (446)
Q Consensus 139 ~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~ 203 (446)
++|+..+ +.++..+|.++++|..+|..+.. .|++ ++|+..|++|+. ++|+++.+|+.+|.
T Consensus 33 ~~a~~~~-----~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAY-----EQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 5666654 56677889999999999999874 5886 999999999999 79999999999999
Q ss_pred HHHHCCChHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhH
Q 013299 204 CYYGAGEDLVALNLLRTLLSGSEDPKCLP-ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLS 282 (446)
Q Consensus 204 ~~~~~g~~~eA~~~~~~al~~~~~P~~~~-a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 282 (446)
++...|++++|+..|++++ +++|+++. ++...+.++. ..|++++|+..|+++++..|+. ..++...+....
T Consensus 108 ~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~a~~~~ 179 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLL--AIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTR-----HHVYVTAALMEY 179 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHH--TSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCC-----THHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHH--hccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHH
Confidence 9999999999999999999 89999987 8887776654 4689999999999999954432 334443332211
Q ss_pred hhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cCCCCHHHHHHHH
Q 013299 283 AQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL---EGGSNLKGWLLMA 359 (446)
Q Consensus 283 ~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l---~P~~~~~~~~~la 359 (446)
. ..|++++|+..|++++ +.+|+++.+|..+|.++...|++++|+..|++++.. +|+.....|..++
T Consensus 180 ~----------~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 180 Y----------CSKDKSVAFKIFELGL-KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp H----------TSCCHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred H----------HcCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 1 1367899999999999 999999999999999999999999999999999995 6642258999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 360 RILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 360 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
.++...|++++|..+++++++..| ++.
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p--~~~ 275 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFR--EEY 275 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTT--TTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcc--ccc
Confidence 999999999999999999999999 543
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=1.2e-21 Score=184.32 Aligned_cols=206 Identities=14% Similarity=0.077 Sum_probs=160.7
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHhcCCCCCC
Q 013299 158 EWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~~~P~ 229 (446)
|.++.+++.+|.++.. .+++++|+..|+++++.+ ++.+++++|.++.. .|++++|+..|++++ .. +
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~--~~--~ 108 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC--DL--K 108 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT--T
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH--Hc--C
Confidence 4445566777777777 888888888888888764 78888888888888 888888888888888 44 4
Q ss_pred ChHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 230 CLPALLIASKICGEY---PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 230 ~~~a~~~~~~~~~~~---~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
++.+++.+|.++... .+++++|+.+|+++++. .+ ..+++.+|.+|.... ...+++++|+.+|+
T Consensus 109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~------~~a~~~lg~~~~~~~-------~~~~~~~~A~~~~~ 174 (273)
T 1ouv_A 109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-ND------GDGCTILGSLYDAGR-------GTPKDLKKALASYD 174 (273)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHHHTS-------SSCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-Cc------HHHHHHHHHHHHcCC-------CCCCCHHHHHHHHH
Confidence 777777777665441 57788888888888873 21 457778888775410 00246899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 013299 307 SAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAA 378 (446)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~a 378 (446)
+++ +. +++.+++++|.++.. .+++++|+.+|+++++.+| + .++..+|.++.. .+++++|+.+|+++
T Consensus 175 ~a~-~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~-~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 175 KAC-DL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--G-GGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHH-HT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--H-HHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHH-HC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--H-HHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 999 76 568999999999999 9999999999999998865 3 889999999999 99999999999999
Q ss_pred HhhcCCCCcHHHH
Q 013299 379 LDQTGKWEQGELL 391 (446)
Q Consensus 379 l~~~p~~~~~~~~ 391 (446)
++..| ++...+
T Consensus 249 ~~~~~--~~a~~~ 259 (273)
T 1ouv_A 249 CKLGA--KGACDI 259 (273)
T ss_dssp HHHTC--HHHHHH
T ss_pred HHcCC--HHHHHH
Confidence 99988 554433
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=4.3e-22 Score=203.38 Aligned_cols=226 Identities=12% Similarity=-0.013 Sum_probs=190.2
Q ss_pred HhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcH-HHHHHHHHHHHHHHH
Q 013299 75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNI-EEAILLLMILLRKVA 153 (446)
Q Consensus 75 ~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~eA~~~l~~~~~~~~ 153 (446)
..+++++|+..+.+++.. +|.+.. ....+|.. +...|++ ++|+..+ +.+
T Consensus 80 ~~~~~~~al~~l~~~~~~----~~~~a~-~~~~lg~~--------------------~~~~g~~~~~A~~~~-----~~a 129 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGS----AQVEAQ-ALMLKGKA--------------------LNVTPDYSPEAEVLL-----SKA 129 (474)
T ss_dssp HHHHHHHHHHHHHHHHTT----CCCCHH-HHHHHHHH--------------------HTSSSSCCHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHHHhcc----CchhHH-HHHHHHHH--------------------HHhccccHHHHHHHH-----HHH
Confidence 355688899999988887 443322 23344433 4456788 9999886 566
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC---------CChHHHHHHHHHHhcC
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA---------GEDLVALNLLRTLLSG 224 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~eA~~~~~~al~~ 224 (446)
++.+|+++++|..+|.++...|++++|+++|+++++++|+ +.+|+++|.++... |++++|+..|++++
T Consensus 130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-- 206 (474)
T 4abn_A 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-- 206 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH--
Confidence 7889999999999999999999999999999999999999 79999999999999 99999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHH
Q 013299 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (446)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~ 304 (446)
.++|+++.+++.+|.++... ++..|. ..+++++|+..
T Consensus 207 ~~~p~~~~~~~~lg~~~~~~-----------------------------~~~~~~--------------~~g~~~~A~~~ 243 (474)
T 4abn_A 207 QMDVLDGRSWYILGNAYLSL-----------------------------YFNTGQ--------------NPKISQQALSA 243 (474)
T ss_dssp HHCTTCHHHHHHHHHHHHHH-----------------------------HHHTTC--------------CHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHH-----------------------------HHhhcc--------------ccchHHHHHHH
Confidence 89999998888776554321 111111 02678999999
Q ss_pred HHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 305 LVSAARSTNM---RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 305 ~~~al~~~~P---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
|++++ +++| +++.+++++|.++..+|++++|+..|+++++++|++ ..+|..++.++..+|++++|+..+.+.
T Consensus 244 ~~~al-~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 244 YAQAE-KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHH-HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHH-HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999 9999 999999999999999999999999999999999999 599999999999999999999876543
No 61
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=1.5e-20 Score=194.21 Aligned_cols=314 Identities=12% Similarity=0.022 Sum_probs=206.5
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013299 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (446)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~ 144 (446)
++..++. +.+.|++++|...|+++++. .|.+.. +...++.++.. .|++++|..+
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~----~P~~~~-~w~~~~~~~~~--------------------~~~~~~a~~~ 68 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQ----FPSSGR-FWKLYIEAEIK--------------------AKNYDKVEKL 68 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTT----CTTCHH-HHHHHHHHHHH--------------------TTCHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHH----CCCCHH-HHHHHHHHHHh--------------------cCCHHHHHHH
Confidence 4555555 36799999999999999999 665432 34445544332 4566777666
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHH-HHHhcCCHHHHHH----HHHhhCC---CCCCcHHHHHHHHHHHHH---------
Q 013299 145 LMILLRKVALKRIEWDPSILDHLSF-AFSIAGDLSSLAT----QIEELLP---GIINRKERYHILALCYYG--------- 207 (446)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~-~l~~~~~~~~A~~----~~~~al~---~~p~~~~~~~~lg~~~~~--------- 207 (446)
+ +.++...| +.+.|...+. .....|++++|.+ .|++++. .+|++...|..++.....
T Consensus 69 ~-----~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~ 142 (530)
T 2ooe_A 69 F-----QRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAE 142 (530)
T ss_dssp H-----HHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTH
T ss_pred H-----HHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHH
Confidence 4 45566666 5666666653 3344566555543 6666543 456666777766666554
Q ss_pred CCChHHHHHHHHHHhcCCCCCCChHHHHHH--------------------------------------------------
Q 013299 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIA-------------------------------------------------- 237 (446)
Q Consensus 208 ~g~~~eA~~~~~~al~~~~~P~~~~a~~~~-------------------------------------------------- 237 (446)
.|++++|..+|++++ . .|.+....++.
T Consensus 143 ~~~~~~a~~~y~~al--~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 143 NQRITAVRRVYQRGC--V-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp HHHHHHHHHHHHHHT--T-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred HhHHHHHHHHHHHHH--h-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 566777777777777 5 45432111100
Q ss_pred ---------------HHHHhcC-----CCC----HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHH
Q 013299 238 ---------------SKICGEY-----PDL----AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFD 293 (446)
Q Consensus 238 ---------------~~~~~~~-----~~~----~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 293 (446)
..+.+.. .++ .+.++..|++++...|.+ +.+|+.+|..+....... .
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~-----~~~w~~~~~~~~~~~~~~----~ 290 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH-----PDIWYEAAQYLEQSSKLL----A 290 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHH----H
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhchhh----h
Confidence 0000000 011 135667777887755443 567777777765310000 0
Q ss_pred HHHHHH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 294 RATRQA-------KALQALVSAARS-TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 294 ~~~~~~-------eAl~~~~~al~~-~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
..|+++ +|+..|++|+ + ++|+++.+|+.+|.++...|++++|...|+++++++|+++..+|..+|.++..+
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 023443 8899999999 8 789999999999999999999999999999999998887325899999888888
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~-~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
|++++|..+|++|++..| .....+...+.+ +...|++++|...|+++++..|++...+
T Consensus 370 ~~~~~A~~~~~~Al~~~~--~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp HHHHHHHHHHHHHHTCTT--CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHhccC--CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 888888888888888877 566666655554 3358888888888888888887665544
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=2.3e-22 Score=204.09 Aligned_cols=227 Identities=11% Similarity=-0.023 Sum_probs=183.5
Q ss_pred CCCHHHHHHHHHHHHhcCC----HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC---ChHHHHHHHHHHhcCCCCCCC
Q 013299 158 EWDPSILDHLSFAFSIAGD----LSSLATQIEELLPGIINRKERYHILALCYYGAG---EDLVALNLLRTLLSGSEDPKC 230 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~~~P~~ 230 (446)
+.++.+++.+|.++...+. .+++...++.+...+|. ++++||.+|...| ++++|+..|++++ ...|..
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa--~~g~~~ 212 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV--SRGTVT 212 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTTCSC
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH--HCCCHH
Confidence 4567888888988888884 45555667777777665 9999999999999 9999999999999 788888
Q ss_pred hHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYP----DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~----~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
...++.+|.++ ... +++++|+.+|+++. +.+ +.+++.+|.+|.... ..+++++|+.+|+
T Consensus 213 a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa---~g~-----~~a~~~Lg~~~~~~~--------~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 213 AQRVDSVARVL-GDATLGTPDEKTAQALLEKIA---PGY-----PASWVSLAQLLYDFP--------ELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG---GGS-----THHHHHHHHHHHHSG--------GGCCHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc---CCC-----HHHHHHHHHHHHhCC--------CCCCHHHHHHHHH
Confidence 88767777665 333 68899999999987 333 568899998843211 1357899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHH
Q 013299 307 SAARSTNMRDLSILYRLSLEYAEQR-----KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNA 377 (446)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~~-----~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~ 377 (446)
+++ +. +++.++++||.+|. .| ++++|+.+|++|. |++ ..+++++|.++.. ..++++|+.+|++
T Consensus 276 ~Aa-~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGR-AA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE-VAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHH-HT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC-HHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHH-HC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 998 54 58999999999988 55 9999999999998 888 4999999998877 4499999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~ 418 (446)
+.+ + +++.+++++|.++.. ..++++|+.+|+++.+.-
T Consensus 348 Aa~--~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 348 AAR--N--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHT--T--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh--h--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 986 3 466788999998874 458999999999987653
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.4e-23 Score=196.91 Aligned_cols=247 Identities=15% Similarity=0.063 Sum_probs=194.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCC--------CCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLP--------GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE-- 226 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~-- 226 (446)
.|..+.++..+|.++...|++++|+..|+++++ .+|....+++.+|.++...|++++|+..|++++ ..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~ 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL--AIRE 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHH
Confidence 467788999999999999999999999999999 478889999999999999999999999999999 55
Q ss_pred ------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CcchhhhHHHHHhhchhHhhhhhhhchHHHHHH
Q 013299 227 ------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGD---GCDQMESTANCLLGISLSAQSKVAITDFDRATR 297 (446)
Q Consensus 227 ------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 297 (446)
+|....++..++.++ ...|++++|+.+++++++.... ........++..+|.++... |+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~ 168 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-----------GK 168 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-----------TC
T ss_pred HHhCCCChHHHHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-----------CC
Confidence 355566777777664 5579999999999999986410 11123467888999998765 56
Q ss_pred HHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC---------CC-----HHHH
Q 013299 298 QAKALQALVSAARST--------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG---------SN-----LKGW 355 (446)
Q Consensus 298 ~~eAl~~~~~al~~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~---------~~-----~~~~ 355 (446)
+++|+..|++++ ++ +|..+.+++.+|.++..+|++++|+..+++++.+.|+ .. ...+
T Consensus 169 ~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 169 YEEVEYYYQRAL-EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp HHHHHHHHHHHH-HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 899999999999 88 7888889999999999999999999999999986443 21 1233
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..++..+...+++.+|+.++++++...| +...+++.+|.++..+|++++|++.|++++++.|+
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVDSP--TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSCCCC---------CH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCCCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3444555566777788889999998888 88999999999999999999999999999999864
No 64
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.89 E-value=7.7e-23 Score=217.98 Aligned_cols=191 Identities=9% Similarity=-0.077 Sum_probs=129.9
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhC--------CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL--------PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE 226 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~ 226 (446)
..+|+++.++...| ...|++++|++.|++++ +.+|+++++|+.+|.++...|++++|+..|++++ +.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~ 462 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA--ER 462 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH--HH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh--cc
Confidence 45688888888777 77899999999999999 8899999999999999999999999999999999 88
Q ss_pred CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHH
Q 013299 227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (446)
Q Consensus 227 ~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~ 306 (446)
+|++..+++.+|.+++. .|++++|+..|+++++..|.+ ..+++++|.++... |++++ +..|+
T Consensus 463 ~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~-----~~~~~~lg~~~~~~-----------g~~~~-~~~~~ 524 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELL-TGDYDSATKHFTEVLDTFPGE-----LAPKLALAATAELA-----------GNTDE-HKFYQ 524 (681)
T ss_dssp HCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHH-----------TCCCT-TCHHH
T ss_pred CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHc-----------CChHH-HHHHH
Confidence 99998888777665443 466666666666666643332 34555666655443 34555 66666
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH
Q 013299 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e 370 (446)
+++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+|.++|.++...++.++
T Consensus 525 ~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 525 TVW-STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHHTC-------
T ss_pred HHH-HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHHHHccCCCCC
Confidence 666 6666666666666666666666666666666666666665 3666666666555555333
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=2.4e-22 Score=198.81 Aligned_cols=240 Identities=10% Similarity=0.021 Sum_probs=201.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC------
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------ 230 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~------ 230 (446)
.++.+|..+...|++++|+..|++++++ .+..+.+++.+|.++...|++++|+..+++++ .+.++.
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~ 182 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY--EIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHTCSTTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHhCccchHH
Confidence 4456999999999999999999999987 33356899999999999999999999999999 664433
Q ss_pred -hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 231 -LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 231 -~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
..++..+|.++ ...|++++|+.+++++++..+.. +......++.++|.+|..+ |++++|+.+|+++
T Consensus 183 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----------g~~~~A~~~~~~a 250 (383)
T 3ulq_A 183 LLQCHSLFATNF-LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ-----------SQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence 34566666654 45799999999999999865432 2344567899999999765 5789999999999
Q ss_pred HHh-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHccC---HHHHHHH
Q 013299 309 ARS-----TN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSNLKGWLLMARILSAQKR---YEDAETI 374 (446)
Q Consensus 309 l~~-----~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P~~~~~~~~~la~~~~~~g~---~~eA~~~ 374 (446)
+ + .+ |..+.+++++|.++..+|++++|+.++++++.+. |.. ...+..+|.++...|+ +++|+..
T Consensus 251 l-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 251 I-AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY-LSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp H-HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred H-HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9 8 57 8889999999999999999999999999999985 333 2346789999999999 8888888
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++. ...| +...++..+|.++..+|++++|+..|++++++.++-
T Consensus 329 ~~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 329 LESK-MLYA--DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHC-cCHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 8877 3445 567789999999999999999999999999998653
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=1.5e-21 Score=182.60 Aligned_cols=208 Identities=13% Similarity=0.043 Sum_probs=153.6
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
...|.+++.++.+|..+...|++++|+..|+++++.+|++ +.+++.+|.+++..|++++|+..|++++ ..+|+++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l--~~~p~~~ 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI--QIYQIDP 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHCCCCc
Confidence 3456677777777777777777777777777777777777 6777777777777777777777777777 6666543
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
. ...+++.+|.++...+... ....|++++|+..|++++ +
T Consensus 87 ~-------------------------------------~~~a~~~lg~~~~~~~~~~---~~~~~~~~~A~~~~~~~l-~ 125 (261)
T 3qky_A 87 R-------------------------------------VPQAEYERAMCYYKLSPPY---ELDQTDTRKAIEAFQLFI-D 125 (261)
T ss_dssp T-------------------------------------HHHHHHHHHHHHHHHCCCT---TSCCHHHHHHHHHHHHHH-H
T ss_pred h-------------------------------------hHHHHHHHHHHHHHhcccc---cccchhHHHHHHHHHHHH-H
Confidence 2 1234444555543300000 001367999999999999 9
Q ss_pred hCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHc-------
Q 013299 312 TNMRDLSIL-----------------YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQ------- 365 (446)
Q Consensus 312 ~~P~~~~a~-----------------~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~--~~~~~~la~~~~~~------- 365 (446)
.+|+++.+. +.+|.++..+|++++|+..|++++...|+++ ..++..+|.++..+
T Consensus 126 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~ 205 (261)
T 3qky_A 126 RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA 205 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence 999997776 8899999999999999999999999999852 36899999999977
Q ss_pred ---cCHHHHHHHHHHHHhhcCCCCc---HHHHHHHHHHHHHhCCHHHH
Q 013299 366 ---KRYEDAETILNAALDQTGKWEQ---GELLRTKAKVQLVQGQLKGA 407 (446)
Q Consensus 366 ---g~~~eA~~~~~~al~~~p~~~~---~~~~~~~a~~~~~~g~~~eA 407 (446)
|++++|+..|+++++.+| ++ ..+...++.++..+|+++++
T Consensus 206 ~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 206 RQPERYRRAVELYERLLQIFP--DSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp GHHHHHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999 66 34555666676666666544
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=7.8e-22 Score=180.46 Aligned_cols=202 Identities=9% Similarity=-0.003 Sum_probs=171.9
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013299 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP-KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (446)
Q Consensus 191 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P-~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (446)
.+.+++.|+.+|.+++..|++++|+..|++++ .++| .+..+++.+|.+ +...|++++|+.+++++++.. |+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~-p~---- 74 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYL--KLTNNQDSVTAYNCGVC-ADNIKKYKEAADYFDIAIKKN-YN---- 74 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTT-CS----
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHH--hccCCCCcHHHHHHHHH-HHHhhcHHHHHHHHHHHHHhC-cc----
Confidence 35678999999999999999999999999999 8998 888888876655 455799999999999999954 43
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-------SILYRLSLEYAEQRKLNAAHYYAKM 342 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~ 342 (446)
...++..+|.++... |++++|+..|++++ +++|+++ .+++++|.++..+|++++|+..|++
T Consensus 75 ~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 75 LANAYIGKSAAYRDM-----------KNNQEYIATLTEGI-KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 267899999999765 57899999999999 9999999 6799999999999999999999999
Q ss_pred HHhhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 343 LLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 343 al~l~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+++++|+ + ..+|.++|.++..+|+ ..++++..+.+ .+... ..+......|.+++|+..|++++++.|+
T Consensus 143 al~~~p~~~~-~~~~~~l~~~~~~~~~-----~~~~~a~~~~~--~~~~~--~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 143 ATDVTSKKWK-TDALYSLGVLFYNNGA-----DVLRKATPLAS--SNKEK--YASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HTTSSCHHHH-HHHHHHHHHHHHHHHH-----HHHHHHGGGTT--TCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhcCCCccc-HHHHHHHHHHHHHHHH-----HHHHHHHhccc--CCHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999 8 5999999999977654 45677777777 44333 3455667788899999999999999865
Q ss_pred hh
Q 013299 421 QT 422 (446)
Q Consensus 421 ~~ 422 (446)
+.
T Consensus 213 ~~ 214 (228)
T 4i17_A 213 RT 214 (228)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 68
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=3e-21 Score=184.74 Aligned_cols=230 Identities=10% Similarity=-0.040 Sum_probs=197.2
Q ss_pred hcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHhcCCCCCCChHHHHHHHHHH----hcC--
Q 013299 173 IAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG--EDLVALNLLRTLLSGSEDPKCLPALLIASKIC----GEY-- 244 (446)
Q Consensus 173 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~----~~~-- 244 (446)
.....++|+.+++++|.++|++..+|+..|.++...| ++++++..+.++| ..+|++..++...+.+. ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L--~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA--LDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH--HHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH--HHCcccHHHHHHHHHHHHHHHHhccc
Confidence 3344578999999999999999999999999999999 9999999999999 89999999998877665 222
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHH--HHHHHHHHHHHhhCCCCHHHHHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA--KALQALVSAARSTNMRDLSILYR 322 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~--eAl~~~~~al~~~~P~~~~a~~~ 322 (446)
.+++++++.+++++++..|.+ ..+|.+.|.++...+ .++ ++++.+.+++ +.||.|..+|.+
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkn-----y~aW~~R~~vl~~l~-----------~~~~~~EL~~~~~~i-~~d~~N~sAW~~ 185 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKN-----HHVWSYRKWLVDTFD-----------LHNDAKELSFVDKVI-DTDLKNNSAWSH 185 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT-----------CTTCHHHHHHHHHHH-HHCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhc-----------ccChHHHHHHHHHHH-HhCCCCHHHHHH
Confidence 167899999999999965554 678999998886543 455 8999999999 999999999999
Q ss_pred HHHHHHHcCC------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHhhc---CCCCcHHHHH
Q 013299 323 LSLEYAEQRK------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED-AETILNAALDQT---GKWEQGELLR 392 (446)
Q Consensus 323 lg~~~~~~~~------~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~---p~~~~~~~~~ 392 (446)
.+.++...++ +++++.++++++.++|++ ..+|+.++.++...|+..+ ....+++++.+. | .++.++.
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~al~ 262 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV--TSSFALE 262 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE--SCHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC--CCHHHHH
Confidence 9999998887 999999999999999999 5999999999999999555 556888888776 7 7889999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH-HHhhhhhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLA-ALQVQTKT 424 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~-l~~~~~~~ 424 (446)
.++.++.+.|+.++|+++|+.+.+ ++|-..+.
T Consensus 263 ~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 263 TLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence 999999999999999999999987 67654443
No 69
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=1.1e-21 Score=199.18 Aligned_cols=366 Identities=15% Similarity=0.054 Sum_probs=247.4
Q ss_pred HHHHhhhhcccChHHHHHHHHHHHHHHHhhh---------cCCCC---CCCCccc-cHHHHHHHHHHHhHHHHHHhC---
Q 013299 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESSF---------AEGFP---ENLGADC-KLQETLNRAVELLPELWKLAD--- 77 (446)
Q Consensus 14 ~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~---------~~~~~---~~~~~~~-~l~~~~~~a~~~l~~~~~~~g--- 77 (446)
...|..+.+.|++++|++.|+++++...... ..+.+ .....++ +..+....+...+|.++...|
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3467777888888888888888765421000 01111 0000000 000012345566777565555
Q ss_pred --ChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCC---------------CccccccCccccCCCcHHH
Q 013299 78 --APRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCP---------------PNLRSQMGSSFVPRNNIEE 140 (446)
Q Consensus 78 --~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~---------------~~~~~~~~~~~~~~~~~~e 140 (446)
++++|+.+|+++++.. +++ ....++.++..+...... +...+.++.+|...+.+++
T Consensus 87 ~~~~~~A~~~~~~Aa~~g-~~~------A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANG-EGN------TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSS------CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CcCHHHHHHHHHHHHHCC-CHH------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 7788888888888862 111 134566665544321110 0000122233333333333
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC----CChHH
Q 013299 141 AILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG---DLSSLATQIEELLPGIINRKERYHILALCYYGA----GEDLV 213 (446)
Q Consensus 141 A~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~e 213 (446)
++..... +.+.+. +.++.+++.+|.++...| ++++|+..|+++.+.+|..+..+++||.+|... +++++
T Consensus 160 ~~~~a~~-~~~~a~---~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 160 HLDDVER-ICKAAL---NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GHHHHHH-HHHHHT---TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CHHHHHH-HHHHHH---cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 3322111 123333 345569999999999999 999999999999999999999999999999766 79999
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhch
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICG--EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~--~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~ 291 (446)
|+..|+++. |+++.+++.+|.+++ ...+++++|+.+|+++++. . + +.+++.+|.+|.. |.-.
T Consensus 236 A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g-~-----~~A~~~Lg~~y~~-G~g~--- 299 (452)
T 3e4b_A 236 AQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D-Q-----PRAELLLGKLYYE-GKWV--- 299 (452)
T ss_dssp HHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T-C-----HHHHHHHHHHHHH-CSSS---
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C-C-----HHHHHHHHHHHHc-CCCC---
Confidence 999999965 889999999988755 5578999999999999973 2 2 6799999999863 2100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA--- 364 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~--- 364 (446)
..++++|+.+|++++ |+++.++++||.+|.. ..++++|+..|++|.+ ++++ .+.+++|.++..
T Consensus 300 ---~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~-~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 300 ---PADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQN-SADFAIAQLFSQGKG 369 (452)
T ss_dssp ---CCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCT-THHHHHHHHHHSCTT
T ss_pred ---CCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChH-HHHHHHHHHHHhCCC
Confidence 126899999999865 9999999999999887 4499999999999977 5664 899999999985
Q ss_pred -ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHhh
Q 013299 365 -QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL--VQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 365 -~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~--~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.+++++|..+|++|.+..+ ..+...++.+.. ..++..+|....++...-.+.
T Consensus 370 ~~~d~~~A~~~~~~A~~~g~----~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQDT----PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTCC----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 5689999999999998644 455566666543 334566777777766665443
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=9.8e-21 Score=187.04 Aligned_cols=242 Identities=14% Similarity=0.056 Sum_probs=201.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCC------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC------
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGI------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------ 230 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~------ 230 (446)
.++.+|..+...|++++|+..|++++++. |..+.+++++|.++...|++++|+..+++++ .+.|+.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al--~~~~~~~~~~~~ 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL--DIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HHHHhCCCchhh
Confidence 56788999999999999999999999873 3456799999999999999999999999999 554432
Q ss_pred -hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 231 -LPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 231 -~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
..++..+|.++ ...|++++|+.+++++++..+. .+......++.++|.+|..+ |++++|+.+|+++
T Consensus 181 ~~~~~~~lg~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----------~~~~~A~~~~~~a 248 (378)
T 3q15_A 181 TIQSLFVIAGNY-DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-----------GDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence 33455666554 5579999999999999996432 22334577899999999764 5789999999999
Q ss_pred HHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHccC---HHHHHHHH
Q 013299 309 ARS-----TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKR---YEDAETIL 375 (446)
Q Consensus 309 l~~-----~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~~~~~g~---~~eA~~~~ 375 (446)
+ + .+|..+.+++++|.++..+|++++|+.++++++.+.+ .. ...+..++.++...|+ +.+|+.++
T Consensus 249 l-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 249 A-KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY-KELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp H-HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH-HHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred H-HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9 9 8899999999999999999999999999999999854 33 2456778888888888 88888888
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++. ...| +...++..+|.++...|++++|+..|++++++.++-.+
T Consensus 327 ~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 327 EKK-NLHA--YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 873 3344 56778889999999999999999999999999876544
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=1.1e-20 Score=176.62 Aligned_cols=205 Identities=13% Similarity=0.027 Sum_probs=171.1
Q ss_pred cccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc---HHHHH
Q 013299 126 SQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD---PSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYH 199 (446)
Q Consensus 126 ~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~---~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 199 (446)
+..+..+...|++++|+..+ +.++...|++ +.+++.+|.++...|++++|+..|+++++..|++ +.+++
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYF-----KAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-----HHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH-----HHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45677889999999999986 6678899999 8999999999999999999999999999998754 67899
Q ss_pred HHHHHHHH--------CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 200 ILALCYYG--------AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 200 ~lg~~~~~--------~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
.+|.++.. .|++++|+..|++++ ..+|+++.+......+ ..... ...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~a~~~~---------------~~~~~--------~~~ 148 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFI--DRYPNHELVDDATQKI---------------RELRA--------KLA 148 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH--HHCTTCTTHHHHHHHH---------------HHHHH--------HHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHH--HHCcCchhHHHHHHHH---------------HHHHH--------HHH
Confidence 99999999 999999999999999 8999988765432221 11111 124
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHH
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR---DLSILYRLSLEYAEQ----------RKLNAAHY 338 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~---~~~a~~~lg~~~~~~----------~~~~~A~~ 338 (446)
..++.+|.+|... |++++|+..|++++ +.+|+ .+.+++.+|.++..+ |++++|+.
T Consensus 149 ~~~~~la~~~~~~-----------g~~~~A~~~~~~~l-~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 149 RKQYEAARLYERR-----------ELYEAAAVTYEAVF-DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 5678899988664 57899999999999 99999 567999999999977 99999999
Q ss_pred HHHHHHhhcCCCC--HHHHHHHHHHHHHccCHHHHH
Q 013299 339 YAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 339 ~~~~al~l~P~~~--~~~~~~la~~~~~~g~~~eA~ 372 (446)
.|+++++..|+++ ..+...++.++..+++++++.
T Consensus 217 ~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 217 LYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999984 145667777777777776543
No 72
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=5.1e-20 Score=176.23 Aligned_cols=238 Identities=13% Similarity=0.064 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhhCCCCCCcHHHHHHHHHHH----HHC---
Q 013299 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG--DLSSLATQIEELLPGIINRKERYHILALCY----YGA--- 208 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~--- 208 (446)
.++|+.+. +.++..+|++..+|+..|.++...| +++++++++++++..+|++..+|+..+.++ ...
T Consensus 49 s~~aL~~t-----~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHIT-----ELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHH-----HHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 35777764 6788999999999999999999999 999999999999999999999999999999 777
Q ss_pred CChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE--EGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 209 g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~--eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
+++++++..+.+++ ..+|++..++...+.++ ...+.++ +++.+++++++..+.+ ..+|.+.+.++...+.
T Consensus 124 ~~~~~EL~~~~~~l--~~~pkny~aW~~R~~vl-~~l~~~~~~~EL~~~~~~i~~d~~N-----~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 124 FDPYREFDILEAML--SSDPKNHHVWSYRKWLV-DTFDLHNDAKELSFVDKVIDTDLKN-----NSAWSHRFFLLFSKKH 195 (306)
T ss_dssp CCTHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHTTCTTCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHSSGG
T ss_pred CCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHhcccChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhccc
Confidence 89999999999999 89999999999887664 4467777 9999999999965544 5799999988866542
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhc---CCCCHHHHHHHHHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA-AHYYAKMLLKLE---GGSNLKGWLLMARIL 362 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~-A~~~~~~al~l~---P~~~~~~~~~la~~~ 362 (446)
.. ....++++++++++++ .++|+|..+|++++.++...|+..+ ....+.+++.++ |.+ ..++..++.++
T Consensus 196 ~~-----~~~~~~eEl~~~~~aI-~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~ 268 (306)
T 3dra_A 196 LA-----TDNTIDEELNYVKDKI-VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIY 268 (306)
T ss_dssp GC-----CHHHHHHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHH
T ss_pred cc-----hhhhHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHH
Confidence 10 1124899999999999 9999999999999999999998555 556888888887 888 49999999999
Q ss_pred HHccCHHHHHHHHHHHHh-hcCCCCcHHHHHHHHHH
Q 013299 363 SAQKRYEDAETILNAALD-QTGKWEQGELLRTKAKV 397 (446)
Q Consensus 363 ~~~g~~~eA~~~~~~al~-~~p~~~~~~~~~~~a~~ 397 (446)
..+|+.++|+.+|+.+.+ .+| -....|..++..
T Consensus 269 ~~~~~~~~A~~~~~~l~~~~Dp--ir~~yW~~~~~~ 302 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKSKYNP--IRSNFWDYQISK 302 (306)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCG--GGHHHHHHHHHT
T ss_pred HccCCHHHHHHHHHHHHhccCh--HHHHHHHHHHhh
Confidence 999999999999999997 799 888888887654
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=2.9e-21 Score=174.91 Aligned_cols=168 Identities=17% Similarity=0.049 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHH----------------HHHHHHHCCChHHHHHHHHHHhc
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHI----------------LALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
+++.+...|..+...|++++|+..|++++..+|+++++|+. +|.++...|++++|+..|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al- 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL- 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 45667778888888888888888888888888888888888 7777777777777777777777
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHH
Q 013299 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (446)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~ 303 (446)
+++|+++.+++.+|.++.. . |++++|+.
T Consensus 82 -~~~p~~~~~~~~lg~~~~~-~--------------------------------------------------g~~~~A~~ 109 (208)
T 3urz_A 82 -QKAPNNVDCLEACAEMQVC-R--------------------------------------------------GQEKDALR 109 (208)
T ss_dssp -HHCTTCHHHHHHHHHHHHH-H--------------------------------------------------TCHHHHHH
T ss_pred -HHCCCCHHHHHHHHHHHHH-c--------------------------------------------------CCHHHHHH
Confidence 6777776666655544322 2 34566666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 304 ALVSAARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
+|++++ +++|+++.+++++|.++..+| +.+.+...+++++..+|. ..+++.+|.++..+|+|++|+.+|++++++
T Consensus 110 ~~~~al-~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 110 MYEKIL-QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 666666 666666666666666665544 334455566665443332 135566666666666666666666666666
Q ss_pred cC
Q 013299 382 TG 383 (446)
Q Consensus 382 ~p 383 (446)
+|
T Consensus 187 ~P 188 (208)
T 3urz_A 187 FP 188 (208)
T ss_dssp SC
T ss_pred CC
Confidence 66
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.85 E-value=1.4e-19 Score=158.01 Aligned_cols=170 Identities=14% Similarity=0.095 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
...++.+|.++...|++++|+..|++++ ..+|+++.++..++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------------------------- 54 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVY--DADAFDVDVALHLGIAYVK------------------------------- 54 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTC--CTTSCCHHHHHHHHHHHHH-------------------------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCccChHHHHHHHHHHHH-------------------------------
Confidence 4566667777777777777777777777 6666665544443333211
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.|++++|+..+++++ +.+|+++.+++.+|.++...|++++|+..+++++..+|++ ..+
T Consensus 55 --------------------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~ 112 (186)
T 3as5_A 55 --------------------TGAVDRGTELLERSL-ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNV 112 (186)
T ss_dssp --------------------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred --------------------cCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHH
Confidence 123456666666666 6666666666666666666666666666666666666666 366
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+..+|.++...|++++|+.+++++++..| ++..+++.+|.++...|++++|+..+++++++.|+.
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRP--NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 66666666666666666666666666666 566666666666666666666666666666666543
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=185.14 Aligned_cols=265 Identities=14% Similarity=0.082 Sum_probs=161.7
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (446)
.+++++..|.++...|++++|+..++++++..++......| ....++..+|.+|...|++++|+..|++
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-----------DVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46789999999999999999999999999976554211111 2356788899999999999999999999
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 013299 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS 168 (446)
Q Consensus 89 al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg 168 (446)
++.. .... .-...|....++..+|
T Consensus 95 al~~----~~~~----------------------------------------------------~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 95 ALAI----REKT----------------------------------------------------LGKDHPAVAATLNNLA 118 (311)
T ss_dssp HHHH----HHHH----------------------------------------------------HCTTCHHHHHHHHHHH
T ss_pred HHHH----HHHH----------------------------------------------------hCCCChHHHHHHHHHH
Confidence 9886 1000 0001123344566777
Q ss_pred HHHHhcCCHHHHHHHHHhhCCC--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--------CCCChH
Q 013299 169 FAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLP 232 (446)
Q Consensus 169 ~~l~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~--------~P~~~~ 232 (446)
.++...|++++|+..|++++++ .|....+++.+|.++...|++++|+..|++++ .. +|..+.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL--EIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHTSCTTCHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHhCCCCHHHHH
Confidence 7777777777777777777765 25566677777777777777777777777777 44 455555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 233 ALLIASKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
++..++.++.. .|++++|+.+++++++..+.. ........+...+......+. ....+.+.+|+..++++
T Consensus 197 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 197 TKNNLASCYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK-----QKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------------CCSCCCC------
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhhc
Confidence 56656555443 577777777777777642110 000001122222222111110 01123345566666666
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
+ ..+|.++.+++.+|.++..+|++++|+.+|++++++.|+
T Consensus 271 ~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 271 K-VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred C-CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6 666777777777777777777777777777777776664
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=1.2e-20 Score=170.81 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=155.9
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a 273 (446)
+++.++..|..+...|++++|+..|++++ ..+|+++.+++..+. ... ....+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~~------~~~------------------~~~~~~~ 56 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTI--ALNIDRTEMYYWTNV------DKN------------------SEISSKL 56 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCHHHHHHHHHHHS------CTT------------------SHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHhhh------cch------------------hhhhHHH
Confidence 57788999999999999999999999999 899999988765321 110 0112345
Q ss_pred HHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
.+.+|.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..
T Consensus 57 ~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~ 123 (208)
T 3urz_A 57 ATELALAYKKN-----------RNYDKAYLFYKELL-QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LA 123 (208)
T ss_dssp HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HH
Confidence 66789888664 57899999999999 9999999999999999999999999999999999999999 59
Q ss_pred HHHHHHHHHHHccC--HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 354 GWLLMARILSAQKR--YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 354 ~~~~la~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+|+++|.++..+|+ .+.+...+++++...| ...+++.+|.++...|++++|+..|++++++.|+.
T Consensus 124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK---MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCCH---HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 99999999988765 4567788888865443 34578899999999999999999999999999974
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=3.3e-19 Score=175.17 Aligned_cols=284 Identities=13% Similarity=-0.021 Sum_probs=206.4
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 142 (446)
..+....|.++...|++++|+..+++++...+..++..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------------ 51 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS------------------------------------------ 51 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhH------------------------------------------
Confidence 45566778888999999999999999988721111100
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH------HHHHHHHHHHHHCCChHHHHH
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALN 216 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eA~~ 216 (446)
-..++..+|.++...|++++|+..+++++.+.|... .++.++|.++...|++++|+.
T Consensus 52 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 114 (373)
T 1hz4_A 52 -----------------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 114 (373)
T ss_dssp -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 012345677777788888888888888877654432 336778888888888888888
Q ss_pred HHHHHhcCCCC--------CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhh
Q 013299 217 LLRTLLSGSED--------PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (446)
Q Consensus 217 ~~~~al~~~~~--------P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (446)
.|++++ .+. |....++..++.+++. .|++++|+.+++++++..+.........++..+|.++...
T Consensus 115 ~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---- 187 (373)
T 1hz4_A 115 TQEKAF--QLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR---- 187 (373)
T ss_dssp HHHHHH--HHHHHTTCTTSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH----
T ss_pred HHHHHH--HHHHHhccccCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc----
Confidence 888888 443 2233445556655544 6888888888888888655432222346777888887554
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---HHHHHHH
Q 013299 289 ITDFDRATRQAKALQALVSAARSTNM--RDLSILY-----RLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLM 358 (446)
Q Consensus 289 ~~~~~~~~~~~eAl~~~~~al~~~~P--~~~~a~~-----~lg~~~~~~~~~~~A~~~~~~al~l~P~~~---~~~~~~l 358 (446)
|++++|+..+++++ .+.+ +++..+. .++.++...|++++|...+++++...|..+ ...+..+
T Consensus 188 -------g~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 188 -------GDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp -------TCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred -------CCHHHHHHHHHHHH-HHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 67899999999999 7733 3322221 344557899999999999999998877531 1367889
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 359 ARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 359 a~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
|.++..+|++++|+..+++++...+... ...++..+|.++...|++++|...+++++.+.+.
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999987754101 2357888999999999999999999999999864
No 78
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.84 E-value=8.9e-21 Score=166.81 Aligned_cols=170 Identities=16% Similarity=0.071 Sum_probs=143.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
+|...+.+..+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+| ++..+..
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~--~~~p-~~~~~~~ 78 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP--LEYQ-DNSYKSL 78 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC--GGGC-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh--hccC-ChHHHHH
Confidence 455667788999999999999999999999999999999999999999999999999999999999 8899 7754432
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013299 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (446)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~ 316 (446)
.+.+.+. . .+...+|+..|++++ +++|++
T Consensus 79 ~~~~~~~----------------~----------------------------------~~~~~~a~~~~~~al-~~~P~~ 107 (176)
T 2r5s_A 79 IAKLELH----------------Q----------------------------------QAAESPELKRLEQEL-AANPDN 107 (176)
T ss_dssp HHHHHHH----------------H----------------------------------HHTSCHHHHHHHHHH-HHSTTC
T ss_pred HHHHHHH----------------h----------------------------------hcccchHHHHHHHHH-HhCCCC
Confidence 2211100 0 001235788999999 999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
+.+++++|.++...|++++|+..|+++++++|+.. ..+|.++|.++..+|++++|+..|++++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999752 26999999999999999999999999985
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=1.2e-20 Score=180.06 Aligned_cols=216 Identities=14% Similarity=0.004 Sum_probs=152.9
Q ss_pred CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC------ChHHHHHHHHHHhcCCCCHH
Q 013299 176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK------CLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~------~~~a~~~~~~~~~~~~~~~~ 249 (446)
++++|+++|+++ |.+|...|++++|+..|++++ .+.+. ...++..+|.+ +...|+++
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA--DYQKKAGNEDEAGNTYVEAYKC-FKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHH-HHHTTCHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHH-HHHCCCHH
Confidence 366666666665 556666677777777777666 44321 13344444443 34456677
Q ss_pred HHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHH
Q 013299 250 EGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYR 322 (446)
Q Consensus 250 eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~ 322 (446)
+|+.+|+++++..+.. .......++..+|.+|... .|++++|+.+|++++ ++.|++ ..++.+
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~----------lg~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND----------LHDYAKAIDCYELAG-EWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----------hcCHHHHHHHHHHHH-HHHHhCCChHHHHHHHHH
Confidence 7777777776654321 1112356788899888652 157899999999999 999865 578999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH-----H
Q 013299 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNL------KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL-----L 391 (446)
Q Consensus 323 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~-----~ 391 (446)
+|.++..+|++++|+.+|++++.+.|+++. .++.++|.++..+|++++|+.+|+++++++| +.... +
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~l 241 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP--NFADSRESNFL 241 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCCCcHHHHHH
Confidence 999999999999999999999999998741 1688999999999999999999999999999 54432 3
Q ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHhhh
Q 013299 392 RTKAKVQL--VQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 392 ~~~a~~~~--~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
..++..+. ..+++++|+..|++++.+.|.+
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 34444443 4678999999999888877644
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1.9e-19 Score=157.17 Aligned_cols=169 Identities=16% Similarity=0.134 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
...++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++ ..+|+++.++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL--ADAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999 788888766654443
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a 319 (446)
++.. .|++++|+..|++++ +.+|+++.+
T Consensus 85 ~~~~---------------------------------------------------~~~~~~A~~~~~~~~-~~~~~~~~~ 112 (186)
T 3as5_A 85 TYVQ---------------------------------------------------VQKYDLAVPLLIKVA-EANPINFNV 112 (186)
T ss_dssp HHHH---------------------------------------------------HTCHHHHHHHHHHHH-HHCTTCHHH
T ss_pred HHHH---------------------------------------------------hcCHHHHHHHHHHHH-hcCcHhHHH
Confidence 3221 234677888888888 888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
++.+|.++...|++++|+..+++++..+|++ ..++..+|.++..+|++++|+.+++++++..|
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888888888888888887 48888888888888888888888888888877
No 81
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=4.6e-21 Score=164.49 Aligned_cols=140 Identities=11% Similarity=0.023 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013299 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l 323 (446)
..|++++|+..+++++...|. .+.+++.+|.+|... |++++|+..|++++ +++|+++.+|+++
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~-----------~~~~~A~~~~~~al-~~~p~~~~a~~~l 71 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEA-----------KEYDLAKKYICTYI-NVQERDPKAHRFL 71 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHH
Confidence 344445555555544442111 133455555555443 45677777777777 7778777788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-LNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|... +++|++++| +++.++..++.++..+|
T Consensus 72 g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P--~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP--GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST--TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhC
Confidence 888777788888888888888888877 47777788777777777766554 477777777 77777777777777766
Q ss_pred C
Q 013299 403 Q 403 (446)
Q Consensus 403 ~ 403 (446)
+
T Consensus 149 ~ 149 (150)
T 4ga2_A 149 E 149 (150)
T ss_dssp C
T ss_pred c
Confidence 4
No 82
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=8.2e-20 Score=180.53 Aligned_cols=234 Identities=10% Similarity=-0.033 Sum_probs=186.5
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-------CcHHHHHH
Q 013299 131 SFVPRNNIEEAILLLMILLRKVALKRIEW---DPSILDHLSFAFSIAGDLSSLATQIEELLPGII-------NRKERYHI 200 (446)
Q Consensus 131 ~~~~~~~~~eA~~~l~~~~~~~~l~~~p~---~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~ 200 (446)
.+...|++++|+..+..++. .....|+ .+.++..+|.++...|++++|+..|++++++.+ ....++++
T Consensus 112 ~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAES--KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH--HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34567899999998743321 1122343 457999999999999999999999999998743 34568999
Q ss_pred HHHHHHHCCChHHHHHHHHHHhcCCCCCCCh------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHH
Q 013299 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PALLIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTA 273 (446)
Q Consensus 201 lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~------~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a 273 (446)
+|.++...|++++|+..|++++ .+.|+.. .++..+|.++ ...|++++|+.+++++++....... +....+
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAY--SMAEAEKQPQLMGRTLYNIGLCK-NSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 9999999999999999999999 6655432 3566666665 4579999999999999995432111 334788
Q ss_pred HHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh
Q 013299 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-----NMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLK 345 (446)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~-----~P~~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~ 345 (446)
+..+|.++... |++++|+..|++++ ++ +|.....+..+|.++...|+ +++|+..+++. .
T Consensus 267 ~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~ 333 (383)
T 3ulq_A 267 YFLITQIHYKL-----------GKIDKAHEYHSKGM-AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M 333 (383)
T ss_dssp HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c
Confidence 99999999765 57899999999999 88 45555556789999999999 89999999887 4
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..|.. ..++..+|.++..+|++++|+.+++++++...
T Consensus 334 ~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 334 LYADL-EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp CHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45555 47899999999999999999999999998765
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=2.3e-20 Score=198.93 Aligned_cols=175 Identities=14% Similarity=0.022 Sum_probs=154.5
Q ss_pred cCCCcHHHHHHHHHHHHHHHHh--------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 013299 133 VPRNNIEEAILLLMILLRKVAL--------KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (446)
Q Consensus 133 ~~~~~~~eA~~~l~~~~~~~~l--------~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 204 (446)
...+++++|+..+ +.++ ..+|++++++..+|.++...|++++|++.|+++++.+|+++.+|+++|.+
T Consensus 402 ~~~~~~~~A~~~~-----~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSL-----RAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHH-----HHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHH-----HHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 4578899999876 4556 78899999999999999999999999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhh
Q 013299 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (446)
Q Consensus 205 ~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (446)
+...|++++|+..|++++ +++|+++.+++.+|.++.. .|++++ +.+|+++++..|.+ ..+++++|.++...
T Consensus 477 ~~~~g~~~~A~~~~~~al--~l~P~~~~~~~~lg~~~~~-~g~~~~-~~~~~~al~~~P~~-----~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVL--DTFPGELAPKLALAATAEL-AGNTDE-HKFYQTVWSTNDGV-----ISAAFGLARARSAE 547 (681)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHSTTCSHHHHHHHHHHHH-HTCCCT-TCHHHHHHHHCTTC-----HHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHH-cCChHH-HHHHHHHHHhCCch-----HHHHHHHHHHHHHc
Confidence 999999999999999999 8999999999988877554 789999 99999999965544 57999999999765
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013299 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 285 ~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~ 333 (446)
|++++|+..|++++ +++|+++.+++++|.++...++.
T Consensus 548 -----------g~~~~A~~~~~~al-~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 548 -----------GDRVGAVRTLDEVP-PTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp -----------TCHHHHHHHHHTSC-TTSTTHHHHHHHHHHHTC-----
T ss_pred -----------CCHHHHHHHHHhhc-ccCcccHHHHHHHHHHHHccCCC
Confidence 57899999999999 99999999999999999877663
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=9.2e-21 Score=162.58 Aligned_cols=136 Identities=9% Similarity=0.123 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.+++++|+..+++++ ..+|+++.+++++|.+|..+|++++|+.+|+++++++|++ ..+|.++|.++..+|++++|+.+
T Consensus 10 ~~~~e~ai~~~~~a~-~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGST-PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHS-CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhc-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCchHHHHHH
Confidence 367899999999999 9999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHhhhhhhccCCcchhhHHhhhhccccC
Q 013299 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY-THLLAALQVQTKTFSSDKRFYKVYFMRKRVSTK 444 (446)
Q Consensus 375 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (446)
|+++++++| +++.+++.+|.++..+|++++|.+.| ++++++. |+.+.+|..++++...
T Consensus 88 ~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----------P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 88 YRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----------PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----------TTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----------cCCHHHHHHHHHHHHH
Confidence 999999999 89999999999999999999888765 9999997 5666778888777654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=2.4e-20 Score=177.98 Aligned_cols=212 Identities=7% Similarity=-0.045 Sum_probs=166.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCC------CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC------hHHH
Q 013299 167 LSFAFSIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------LPAL 234 (446)
Q Consensus 167 lg~~l~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~------~~a~ 234 (446)
.|.++...|++++|+++|++++.+.+ ..+.+|.++|.+|...|++++|+..|++++ .+.|+. ..++
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al--~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI--QIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHH
Confidence 36788899999999999999998743 226799999999999999999999999999 777753 3456
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
..+|.++....|++++|+.+|+++++..+... ......++..+|.++... |++++|+..|++++ ++.
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~ 188 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-----------GQYIEASDIYSKLI-KSS 188 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHH
Confidence 66776654434999999999999999765332 122356788899998664 57999999999999 999
Q ss_pred CCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH-----HHHHHHHHH--HccCHHHHHHHHHHHH
Q 013299 314 MRDLS-------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG-----WLLMARILS--AQKRYEDAETILNAAL 379 (446)
Q Consensus 314 P~~~~-------a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~-----~~~la~~~~--~~g~~~eA~~~~~~al 379 (446)
|++.. +++++|.++..+|++++|+.+|++++.++|+.. .+ +..++..+. ..+++++|+..|++++
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 98764 678999999999999999999999999999873 43 344555553 4678999999999999
Q ss_pred hhcCCCCcHHHHHHHH
Q 013299 380 DQTGKWEQGELLRTKA 395 (446)
Q Consensus 380 ~~~p~~~~~~~~~~~a 395 (446)
.++| .+..++...-
T Consensus 268 ~l~~--~~~~~~~~~k 281 (292)
T 1qqe_A 268 RLDK--WKITILNKIK 281 (292)
T ss_dssp CCCH--HHHHHHHHHH
T ss_pred ccHH--HHHHHHHHHH
Confidence 9999 6655555443
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.83 E-value=9.2e-19 Score=171.98 Aligned_cols=293 Identities=15% Similarity=0.042 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHH
Q 013299 4 HAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETI 83 (446)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~ 83 (446)
+...+-.+++..+|..+...|++++|+..++++++.. |... ......++..+|.++...|++++|+
T Consensus 8 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~ 73 (373)
T 1hz4_A 8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL--------PPGW------FYSRIVATSVLGEVLHCKGELTRSL 73 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------CTTC------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCc------hhHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4455668889999999999999999999999999852 2110 0113356778899999999999999
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 013299 84 MSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI 163 (446)
Q Consensus 84 ~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~ 163 (446)
..|++++.. .+.. +... ....+
T Consensus 74 ~~~~~al~~----~~~~-----------------------------------~~~~-------------------~~~~~ 95 (373)
T 1hz4_A 74 ALMQQTEQM----ARQH-----------------------------------DVWH-------------------YALWS 95 (373)
T ss_dssp HHHHHHHHH----HHHT-----------------------------------TCHH-------------------HHHHH
T ss_pred HHHHHHHHH----HHhc-----------------------------------CcHH-------------------HHHHH
Confidence 999999987 2211 0000 00234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC-----
Q 013299 164 LDHLSFAFSIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC----- 230 (446)
Q Consensus 164 ~~~lg~~l~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~----- 230 (446)
+..+|.++...|++++|+..|++++++. |....++.++|.++...|++++|+..+++++ ...|..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~ 173 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI--EVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTSCGGGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhhccCcHHH
Confidence 5678888888899999999888888764 4456678889999999999999999999988 565542
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
..++..++.++.. .|++++|+.+++++++..+.........+.. .++.++. ..|++++|...++++
T Consensus 174 ~~~~~~la~~~~~-~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 174 LQCLAMLIQCSLA-RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ-----------MTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-----------HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH-----------HCCCHHHHHHHHHhC
Confidence 3345556665444 6889999999999988643321111111111 1222232 246789999999999
Q ss_pred HHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 309 ARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 309 l~~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+ ...|.+ ..++..+|.++...|++++|+..+++++...+.. ...++..+|.++..+|++++|...+++++
T Consensus 242 ~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 242 A-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp C-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred C-CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9 888764 3467899999999999999999999999886542 12478889999999999999999999999
Q ss_pred hhcC
Q 013299 380 DQTG 383 (446)
Q Consensus 380 ~~~p 383 (446)
...+
T Consensus 321 ~~~~ 324 (373)
T 1hz4_A 321 KLAN 324 (373)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8876
No 87
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=2.2e-18 Score=165.98 Aligned_cols=229 Identities=13% Similarity=0.012 Sum_probs=178.0
Q ss_pred HhcCCH-HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC----------hHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 172 SIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGE----------DLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 172 ~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
...|.+ ++|++++++++.++|++..+|+..+.++...|+ +++++..+..++ ..+|++..++...+.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L--~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL--RVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHH
Confidence 345555 478888888999999999999888888887776 678888888888 7889988888877766
Q ss_pred HhcCCC--CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q 013299 241 CGEYPD--LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (446)
Q Consensus 241 ~~~~~~--~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~ 318 (446)
+.. .+ .+++++.++.++++..|.+ ..+|.+.+.+....+. .++++++++.+++ +.+|.|..
T Consensus 118 L~~-l~~~~~~~EL~~~~k~l~~dprN-----y~AW~~R~~vl~~l~~----------~~~eel~~~~~~I-~~~p~N~S 180 (331)
T 3dss_A 118 LSR-LPEPNWARELELCARFLEADERN-----FHCWDYRRFVAAQAAV----------APAEELAFTDSLI-TRNFSNYS 180 (331)
T ss_dssp HHH-CSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTC----------CHHHHHHHHHHHH-HHCSCCHH
T ss_pred Hhc-cCcccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCc----------CHHHHHHHHHHHH-HHCCCCHH
Confidence 443 45 4788888899988865544 5788888887755431 1578999999999 99999999
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-----------cCHHHHHH
Q 013299 319 ILYRLSLEYAEQ--------------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-----------KRYEDAET 373 (446)
Q Consensus 319 a~~~lg~~~~~~--------------~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-----------g~~~eA~~ 373 (446)
+|.+++.++... +.+++++.++.+++.++|++ ..+|+.+..++... +.+++++.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 999999888876 56889999999999999998 58998776666655 56889999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHhhhh
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQL---VQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~---~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+++++++..| ++.-.+..++.+.. ..|..++....+.++++++|...
T Consensus 260 ~~~elle~~p--d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 260 SCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp HHHHHHHHCT--TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHhhCc--ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 9999999999 77444433333322 35778888999999999987643
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=4.5e-20 Score=172.37 Aligned_cols=208 Identities=17% Similarity=0.108 Sum_probs=146.7
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLPALLIASKICGEYPDLAEEGATFASRALECL- 262 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~--------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~- 262 (446)
|..+.+++.+|.++...|++++|+..|++++ .+ +|....++..+|.++ ...|++++|+.+++++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDAL--AIREKTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHTCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHHcCCcchHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666 33 233344455554443 33566666666666666542
Q ss_pred ---CCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcC
Q 013299 263 ---GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--------NMRDLSILYRLSLEYAEQR 331 (446)
Q Consensus 263 ---~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~--------~P~~~~a~~~lg~~~~~~~ 331 (446)
.++ .+....++..+|.++... |++++|+..|++++ ++ +|....++.++|.++..+|
T Consensus 117 ~~~~~~-~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 117 KVLGKF-HPDVAKQLNNLALLCQNQ-----------GKAEEVEYYYRRAL-EIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCC-ChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 111 123467888899988765 56899999999999 98 7888899999999999999
Q ss_pred CHHHHHHHHHHHHhh---------cCCCCHHHHHHHHHHHHHccCHH------HHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 332 KLNAAHYYAKMLLKL---------EGGSNLKGWLLMARILSAQKRYE------DAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 332 ~~~~A~~~~~~al~l---------~P~~~~~~~~~la~~~~~~g~~~------eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
++++|+.++++++.+ .|... ..|..++......+.+. ++..+++......| +...++..+|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~la~ 260 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNK-PIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP--TVNTTLRSLGA 260 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCC-CHHHHHHHHHHTTCCCCC------------CCCCCCH--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence 999999999999987 45553 78888888777655544 44444444433445 67888999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHH
Q 013299 397 VQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
++..+|++++|+..|++++++.
T Consensus 261 ~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 261 LYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999864
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=4.5e-19 Score=162.33 Aligned_cols=206 Identities=10% Similarity=-0.041 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH---H
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP---A 233 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~---a 233 (446)
++.+++.+|..+...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++ +.+|+++. +
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l--~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCcHHHH
Confidence 567889999999999999999999999999888774 799999999999999999999999999 89999875 5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
++.+|.+++. .+. .. ...+..++..+.. .|++++|+..|++++ +.+
T Consensus 81 ~~~~g~~~~~-~~~-----~~----------------~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~l-~~~ 126 (225)
T 2yhc_A 81 MYMRGLTNMA-LDD-----SA----------------LQGFFGVDRSDRD-----------PQQARAAFSDFSKLV-RGY 126 (225)
T ss_dssp HHHHHHHHHH-HHC-----------------------------------C-----------CHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHh-hhh-----hh----------------hhhhhccchhhcC-----------cHHHHHHHHHHHHHH-HHC
Confidence 5655554432 110 00 1122333433322 357899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH---HH
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG---EL 390 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~ 390 (446)
|+++.++..+..+.. +.+.. ......+|.++..+|++++|+..|+++++.+| +++ .+
T Consensus 127 P~~~~a~~a~~~l~~-----------------~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~a 186 (225)
T 2yhc_A 127 PNSQYTTDATKRLVF-----------------LKDRL-AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP--DTQATRDA 186 (225)
T ss_dssp TTCTTHHHHHHHHHH-----------------HHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TSHHHHHH
T ss_pred cCChhHHHHHHHHHH-----------------HHHHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc--CCCccHHH
Confidence 999876543222111 11111 24455677888888888888888888888877 543 66
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++.+|.++.++|++++|++.++++....|+.
T Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 187 LPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 7888888888888888888888777665543
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.81 E-value=3.1e-19 Score=169.94 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=148.3
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHH
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~ 234 (446)
...|.+++.+..+|..+...|++++|++.|+++++.+|+++++++.||.++...|++++|+..|++++ ..+|+.....
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~--~~~p~~~~~~ 188 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP--LQDQDTRYQG 188 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC--GGGCSHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc--hhhcchHHHH
Confidence 33499999999999999999999999999999999999999999999999999999999999999999 8899543222
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P 314 (446)
+ .+.+. +. ..++.++|+..|++++ +.+|
T Consensus 189 ~-~~~~~---------------------------------------l~-----------~~~~~~~a~~~l~~al-~~~P 216 (287)
T 3qou_A 189 L-VAQIE---------------------------------------LL-----------XQAADTPEIQQLQQQV-AENP 216 (287)
T ss_dssp H-HHHHH---------------------------------------HH-----------HHHTSCHHHHHHHHHH-HHCT
T ss_pred H-HHHHH---------------------------------------HH-----------hhcccCccHHHHHHHH-hcCC
Confidence 2 11111 10 1133467899999999 9999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--NLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
+++.+++++|.++...|++++|+..|+++++++|++ + .++.+++.++..+|+.++|+..|++++.
T Consensus 217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~-~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG-QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc-hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999987 5 8999999999999999999999999885
No 91
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.81 E-value=6.1e-20 Score=157.69 Aligned_cols=120 Identities=10% Similarity=0.113 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
+-.+-..+++++ +++|+++.+++.+|.++..+|++++|+..|++++.++|++ ..+|.++|.++..+|+|++|+.+|++
T Consensus 18 ~~~~~~~l~~al-~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 18 AINSGATLKDIN-AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-VDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHTSCCTGGGC-CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCCHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 344556788999 9999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+++++| +++.+|+++|.++..+|++++|+..|++++++.|+.
T Consensus 96 al~l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 96 AFALGK--NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999 899999999999999999999999999999998754
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=8.2e-19 Score=160.61 Aligned_cols=193 Identities=11% Similarity=-0.059 Sum_probs=130.2
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013299 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (446)
Q Consensus 194 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~ 270 (446)
.+..++.+|..++..|++++|+..|++++ ...|+++ .+++.+|.+++. .|++++|+..|+++++..|.+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~P~~~--~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHP--NI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCT--TH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCC--cH
Confidence 56789999999999999999999999999 7888865 566766665544 6788888888888888655442 22
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..+++.+|.++...+ +.....++.++.++..+|++++|+..|+++++..|++
T Consensus 78 ~~a~~~~g~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~ 129 (225)
T 2yhc_A 78 DYVMYMRGLTNMALD----------------------------DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS 129 (225)
T ss_dssp HHHHHHHHHHHHHHH----------------------------C--------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhhh----------------------------hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence 457777887775432 1112234456666667889999999999999999998
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcc
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKR 430 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~ 430 (446)
+ .++..+..+.. +.+ ......+.+|.++...|++++|+..|+++++..|+.+.....-..
T Consensus 130 ~-~a~~a~~~l~~-----------------~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 130 Q-YTTDATKRLVF-----------------LKD--RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL 189 (225)
T ss_dssp T-THHHHHHHHHH-----------------HHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred h-hHHHHHHHHHH-----------------HHH--HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence 5 65543322111 111 223445788999999999999999999999999987654433444
Q ss_pred hhhHHhhhh
Q 013299 431 FYKVYFMRK 439 (446)
Q Consensus 431 ~~~~~~~~~ 439 (446)
.-.+|+..+
T Consensus 190 l~~~~~~~g 198 (225)
T 2yhc_A 190 MENAYRQMQ 198 (225)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 444444443
No 93
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.80 E-value=1.5e-17 Score=160.20 Aligned_cols=238 Identities=13% Similarity=0.009 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC
Q 013299 139 EEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD----------LSSLATQIEELLPGIINRKERYHILALCYYGA 208 (446)
Q Consensus 139 ~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 208 (446)
++|+.+. +.++..+|++..+|+..+.++...+. +++++.+++.++..+|.+..+|+..+.++...
T Consensus 47 ~eaL~~t-----~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 47 ESVLELT-----SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp HHHHHHH-----HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 4777764 77889999999999999999988776 68999999999999999999999999999999
Q ss_pred CC--hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhh
Q 013299 209 GE--DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL-AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 209 g~--~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~-~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (446)
|+ +++++..+.+++ ..+|.|..++...+.++.. .+. .++++.+++++|+..|.+ ..+|.++|.++....
T Consensus 122 ~~~~~~~EL~~~~k~l--~~dprNy~AW~~R~~vl~~-l~~~~~eel~~~~~~I~~~p~N-----~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 122 PEPNWARELELCARFL--EADERNFHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQLH 193 (331)
T ss_dssp SSCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhh
Confidence 95 899999999999 8999999999988766544 566 699999999999965554 578999998876542
Q ss_pred hhhhch---HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhcCCCC
Q 013299 286 KVAITD---FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----------RKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 286 ~~~~~~---~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~-----------~~~~~A~~~~~~al~l~P~~~ 351 (446)
...... ....+.++++++++.+++ .++|+|..+|+++..++... +.++++++.++++++++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai-~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAF-FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred hccccccccccchHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 110000 001257899999999999 99999999998777676655 46899999999999999997
Q ss_pred HHHHHHHHHHHH-----HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 352 LKGWLLMARILS-----AQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 352 ~~~~~~la~~~~-----~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
.|..++.++. ..|..++...++.+.++++| ....-|..++
T Consensus 272 --~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp--~r~~~y~d~~ 316 (331)
T 3dss_A 272 --KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP--MRAAYLDDLR 316 (331)
T ss_dssp --HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG--GGHHHHHHHH
T ss_pred --chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc--chhhHHHHHH
Confidence 3555554432 35788999999999999999 6655554443
No 94
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.80 E-value=1.6e-18 Score=167.58 Aligned_cols=248 Identities=10% Similarity=-0.048 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHhcCCCCCCChHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLI 236 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~~~P~~~~a~~~ 236 (446)
|+..+++..+..++...+..++|++.++++|.++|++..+|+..+.++...| ++++++..++++| ..+|++..++..
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L--~~nPKny~aW~h 128 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA--VQNLKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HhCCCcHHHHHH
Confidence 3445566666666666677788888888888888888888888888888888 4888888888888 788888888887
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC
Q 013299 237 ASKICGEYPD-LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (446)
Q Consensus 237 ~~~~~~~~~~-~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~ 315 (446)
.+.+.....+ ..++++.+++++++..|.+ ..+|.+.+.++...+...... .....++++.+.+++ +.+|.
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-----y~AW~~R~wvl~~l~~~~~~~---~~~~~eELe~~~k~I-~~dp~ 199 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKN-----YHTWAYLHWLYSHFSTLGRIS---EAQWGSELDWCNEML-RVDGR 199 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-----HHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHH-HHCTT
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhccccccc---hhhHHHHHHHHHHHH-HhCCC
Confidence 7666544325 7788888888888854443 578888888776554321100 122459999999999 99999
Q ss_pred CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH--------------------
Q 013299 316 DLSILYRLSLEYAEQRK-------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY-------------------- 368 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~-------~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~-------------------- 368 (446)
|..+|++++.++...++ +++++.++++++.++|++ ..+|+.+..++...|+-
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n-~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN-VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI 278 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence 99999999999999887 899999999999999999 59999999999888774
Q ss_pred HHHHHHHHHHHhhc------CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHh
Q 013299 369 EDAETILNAALDQT------GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL-AALQ 419 (446)
Q Consensus 369 ~eA~~~~~~al~~~------p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l-~l~~ 419 (446)
.+-...+...+... + ..+.++..++.++.+.|+.++|+++|+.+. +.+|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~--~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 279 ETVEAFGFPMPSDPLPEDTPL--PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp -------CCCCC-CCCSSCCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred hhHHHHHHHHHhcccccccCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 33333333333322 3 567889999999999999999999999876 4444
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=2.3e-19 Score=157.76 Aligned_cols=171 Identities=18% Similarity=0.038 Sum_probs=133.5
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013299 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (446)
Q Consensus 191 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~ 270 (446)
+|...+.++.+|..+...|++++|+..|++++ ..+|+++.+++.+|.++.. .
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~-~------------------------- 53 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLS--DELQSRGDVKLAKADCLLE-T------------------------- 53 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSC--HHHHTSHHHHHHHHHHHHH-T-------------------------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHH-C-------------------------
Confidence 34555667788888888888888888888888 7788887777666554332 2
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYA-EQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~l~P~ 349 (446)
|++++|+..|++++ +.+| ++..+..++.+.. ..++..+|+..++++++++|+
T Consensus 54 -------------------------g~~~~A~~~~~~a~-~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~ 106 (176)
T 2r5s_A 54 -------------------------KQFELAQELLATIP-LEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD 106 (176)
T ss_dssp -------------------------TCHHHHHHHHTTCC-GGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT
T ss_pred -------------------------CCHHHHHHHHHHhh-hccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC
Confidence 34566777777777 7777 7766655554432 333445689999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
+ ..+|+.+|.++..+|++++|+..|+++++.+|++.+..++.++|.++..+|+.++|+..|+++|..
T Consensus 107 ~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 107 N-FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9 599999999999999999999999999999993334679999999999999999999999999874
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=8.3e-20 Score=170.56 Aligned_cols=251 Identities=15% Similarity=0.087 Sum_probs=164.8
Q ss_pred hcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHH
Q 013299 21 QGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAET 100 (446)
Q Consensus 21 ~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~ 100 (446)
...|++++|+..|+++++...+......|. ...++..+|.+|...|++++|+..|+++++. ....
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~ 76 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPD-----------VATMLNILALVYRDQNKYKEAAHLLNDALAI----REKT 76 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----HHHH
Confidence 467899999999999999876654222222 3568888999999999999999999999886 1000
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 013299 101 TAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSL 180 (446)
Q Consensus 101 ~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A 180 (446)
.-...|..+.++..+|.++...|++++|
T Consensus 77 ----------------------------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 77 ----------------------------------------------------LGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp ----------------------------------------------------TCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ----------------------------------------------------cCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 0011133455677788888888888888
Q ss_pred HHHHHhhCCC--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--------CCCChHHHHHHHHHHhcC
Q 013299 181 ATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLPALLIASKICGEY 244 (446)
Q Consensus 181 ~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~--------~P~~~~a~~~~~~~~~~~ 244 (446)
++.|++++.+ +|....+++++|.++...|++++|+..|++++ .. +|....++..+|.++..
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~~- 181 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL--EIYATRLGPDDPNVAKTKNNLASCYLK- 181 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHSCTTCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHH-
Confidence 8888888876 56777788888888888888888888888888 55 55556666666666544
Q ss_pred CCCHHHHHHHHHHHHHHcCCC----cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013299 245 PDLAEEGATFASRALECLGDG----CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~ 320 (446)
.|++++|+.+++++++..+.. ........+..++..+...+.. .....+.++...++.+. ...|..+.++
T Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 255 (283)
T 3edt_B 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR-----RDSAPYGEYGSWYKACK-VDSPTVNTTL 255 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC-----CC------------CCC-CCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 578888888888888752210 0011123344444433222111 11223556666666666 6667777788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
..+|.++..+|++++|+.+|++++++.
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 888888888888888888888887653
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=7.3e-19 Score=146.09 Aligned_cols=113 Identities=12% Similarity=-0.027 Sum_probs=105.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC
Q 013299 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE 386 (446)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 386 (446)
++. .+||+.++++.++|..+.+.|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..|+++++++| +
T Consensus 4 r~a-~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~ 79 (126)
T 4gco_A 4 RLA-YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLDS--K 79 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred HHH-HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--h
Confidence 456 7999999999999999999999999999999999999999 59999999999999999999999999999999 8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 387 ~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++.+|+++|.++..+|++++|++.|++++++.|++.+
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999999755443
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.80 E-value=1.4e-18 Score=165.38 Aligned_cols=169 Identities=15% Similarity=-0.011 Sum_probs=152.2
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|++++.++.+|..+...|++++|+..|++++ ..+|+++.+++.+|.++.. .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~-~-------------------------- 164 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAW--QLSNQNGEIGLLLAETLIA-L-------------------------- 164 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTSCHHHHHHHHHHHHH-T--------------------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCcchhHHHHHHHHHHH-C--------------------------
Confidence 8899999999999999999999999999999 8999999888776655433 2
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
|++++|+..|++++ ..+|++...+...+..+...++.++|+..|++++.++|++
T Consensus 165 ------------------------g~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~- 218 (287)
T 3qou_A 165 ------------------------NRSEDAEAVLXTIP-LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED- 218 (287)
T ss_dssp ------------------------TCHHHHHHHHTTSC-GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-
T ss_pred ------------------------CCHHHHHHHHHhCc-hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-
Confidence 34677777888888 8888777777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ--GELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..+++++|.++..+|++++|+..|+++++.+| ++ ..++.+++.++...|+.++|+..|++++..
T Consensus 219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 219 AALATQLALQLHQVGRNEEALELLFGHLRXDL--TAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999999999999 65 899999999999999999999999999875
No 99
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.80 E-value=1.2e-18 Score=171.99 Aligned_cols=253 Identities=9% Similarity=0.002 Sum_probs=174.2
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
.++.+|..+...|++++|+..|+++++..... ++ ......++..+|.+|...|++++|+..|++++.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~--------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-----SD--------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----CC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-----CC--------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 57789999999999999999999998764321 11 112456788899999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (446)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (446)
. .+.. +.+. +..+.++..+|.++
T Consensus 170 ~----~~~~-----------------------------------~~~~------------------~~~~~~~~~lg~~y 192 (378)
T 3q15_A 170 I----YQNH-----------------------------------PLYS------------------IRTIQSLFVIAGNY 192 (378)
T ss_dssp H----HHTS-----------------------------------TTCH------------------HHHHHHHHHHHHHH
T ss_pred H----HHhC-----------------------------------CCch------------------hhHHHHHHHHHHHH
Confidence 6 1110 0000 11234667888888
Q ss_pred HhcCCHHHHHHHHHhhCCCCC------CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCC-----CCCCChHHHHHHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGS-----EDPKCLPALLIASKI 240 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----~~P~~~~a~~~~~~~ 240 (446)
...|++++|++.|++++++.+ ....+++++|.++...|++++|+..|++++ . .+|..+.++..+|.+
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA--KVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888887532 234578888888888888888988888888 7 778777777777776
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013299 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (446)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~ 320 (446)
+.. .|++++|+.+++++++..+..........+..++..+...+. ...+.+|+..+++ . ...|....++
T Consensus 271 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~--------~~~~~~al~~~~~-~-~~~~~~~~~~ 339 (378)
T 3q15_A 271 LCK-AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD--------ERKIHDLLSYFEK-K-NLHAYIEACA 339 (378)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC--------HHHHHHHHHHHHH-T-TCHHHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHh-C-CChhHHHHHH
Confidence 554 688888888888888865432211122233444444433321 0235666666665 2 3445555666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
..+|.++...|++++|+.+|++++.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 777777777777777777777776654
No 100
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.79 E-value=9.6e-20 Score=170.86 Aligned_cols=219 Identities=12% Similarity=-0.015 Sum_probs=180.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHH-------HHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHIL-------ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
+..|..+ ..+++.+|.+.|.+++.++|+.+++|..+ +.++...++..+++..+++++ .+.|+...+++.+
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEEC
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhcc
Confidence 3445555 68999999999999999999999999999 899999999999999999999 9999987765542
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
++++ |+. . .+-. ....++..++.++.. .|++++|.+.|+.++ ..+|++.
T Consensus 88 ~g~y----~~~-----------~-~~v~---~r~dl~LayA~~L~~-----------~g~y~eA~~~l~~~~-~~~p~~~ 136 (282)
T 4f3v_A 88 GGLY----GDI-----------T-YPVT---SPLAITMGFAACEAA-----------QGNYADAMEALEAAP-VAGSEHL 136 (282)
T ss_dssp CTTT----CCC-----------E-EECS---SHHHHHHHHHHHHHH-----------HTCHHHHHHHHTSSC-CTTCHHH
T ss_pred CCcc----ccc-----------c-cccC---CHhHHHHHHHHHHHH-----------CCCHHHHHHHHHHHH-hcCCchH
Confidence 2221 000 0 1110 123455666666654 467999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--CCCC-cHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--GKWE-QGELLRT 393 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~-~~~~~~~ 393 (446)
++|.+|.++.+.+++++|+.+|++++... |.....+++++|.++..+|++++|+.+|++++... | . ..+++++
T Consensus 137 -~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P--~~~~da~~~ 213 (282)
T 4f3v_A 137 -VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGE--ACARAIAWY 213 (282)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTT--TTHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCc--cccHHHHHH
Confidence 99999999999999999999999887753 22112589999999999999999999999999654 6 4 7789999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+|.++..+|+.++|...|+++++..|+
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999876
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=6e-18 Score=140.52 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=107.2
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+.++..+|..+... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|+
T Consensus 12 ~a~~~~~~G~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 12 LAQEEKNKGNEYFKK-----------GDYPTAMRHYNEAV-KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 467888999998765 57899999999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+ ..+|.++|.++..+|++++|+..|+++++++| ++.+++..++.++
T Consensus 80 ~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P--~~~~a~~~l~~~l 125 (126)
T 4gco_A 80 F-IKGYIRKAACLVAMREWSKAQRAYEDALQVDP--SNEEAREGVRNCL 125 (126)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHC
T ss_pred h-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc--CCHHHHHHHHHhc
Confidence 9 59999999999999999999999999999999 8999999888764
No 102
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=4.8e-16 Score=169.88 Aligned_cols=307 Identities=11% Similarity=0.035 Sum_probs=223.7
Q ss_pred HHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHH------------HHHHHH--------HhHHHHH
Q 013299 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQET------------LNRAVE--------LLPELWK 74 (446)
Q Consensus 15 ~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~------------~~~a~~--------~l~~~~~ 74 (446)
-..++|...|.+.+|++.+++++-. |..+..+..+.-. ...... ..|.++.
T Consensus 990 ~~vKaf~~aglp~EaieLLEKivl~---------~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIVLD---------NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcC---------CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHH
Confidence 3566777999999999999998832 2111100011100 111122 2478999
Q ss_pred HhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHh
Q 013299 75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVAL 154 (446)
Q Consensus 75 ~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l 154 (446)
+.|.++||+.+|+++-.. + . ... .++ ...+++++|+..+ +
T Consensus 1061 ~lglyEEAf~IYkKa~~~----~-~-------A~~-VLi-------------------e~i~nldrAiE~A-----e--- 1100 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVN----T-S-------AVQ-VLI-------------------EHIGNLDRAYEFA-----E--- 1100 (1630)
T ss_pred hCCCHHHHHHHHHHcCCH----H-H-------HHH-HHH-------------------HHHhhHHHHHHHH-----H---
Confidence 999999999999998432 1 1 011 111 1235688888753 2
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC-hHH
Q 013299 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPA 233 (446)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~-~~a 233 (446)
..+++.+|+.+|.++...|++++|+.+|.++ ++++.|..+|.++.+.|++++|++.|..|+ +..|+. ...
T Consensus 1101 --rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mAr--k~~~e~~Idt 1171 (1630)
T 1xi4_A 1101 --RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMAR--KKARESYVET 1171 (1630)
T ss_pred --hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhcccccccH
Confidence 2578999999999999999999999999886 889999999999999999999999999999 566542 222
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
. ++ .++.+.+++++ ++.| +. .++ ...+..+|..+... |++++|+.+|.++
T Consensus 1172 ~--La-faYAKl~rlee-le~f---I~--~~n-----~ad~~~iGd~le~e-----------g~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1172 E--LI-FALAKTNRLAE-LEEF---IN--GPN-----NAHIQQVGDRCYDE-----------KMYDAAKLLYNNV----- 1221 (1630)
T ss_pred H--HH-HHHHhhcCHHH-HHHH---Hh--CCC-----HHHHHHHHHHHHhc-----------CCHHHHHHHHHhh-----
Confidence 2 33 34555677764 4333 32 222 34566788888664 5789999999875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
..|..+|.++..+|++++|++.+++| .+ ..+|...+.+....|+|..|..+... +..+| +-+..
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA-----~n-~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~-----deLee 1285 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NS-TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA-----DELEE 1285 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CC-HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCH-----HHHHH
Confidence 36889999999999999999999999 44 38899899998899999999887764 54555 44447
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
++..+...|.+++|+..|+++|.+.+.+...|
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 78888899999999999999988877665555
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=6.1e-18 Score=176.23 Aligned_cols=164 Identities=14% Similarity=0.060 Sum_probs=86.2
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~ 253 (446)
.|++++|++.|+++++.+|+++.+|+.+|.++...|++++|+..|++++ .++|+++.++..+|.++.. .|++++|+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~-~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL--ALHPGHPEAVARLGRVRWT-QQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTSTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence 4788999999999999999999999999999999999999999999999 8999988877766655433 345544444
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---
Q 013299 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--- 330 (446)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~--- 330 (446)
+++++++..|.+ ..+++.+|.++... |++++|+..|++++ +++|+++.+++++|.++..+
T Consensus 79 ~~~~al~~~p~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 79 LLQQASDAAPEH-----PGIALWLGHALEDA-----------GQAEAAAAAYTRAH-QLLPEEPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhhcc
Confidence 444444432221 23444444444332 23445555555555 45555555555555555554
Q ss_pred CCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 331 RKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 331 ~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
|++++|+..++++++.+|++. ..+..+
T Consensus 142 g~~~~A~~~~~~al~~~p~~~-~~~~~l 168 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQGVGAV-EPFAFL 168 (568)
T ss_dssp TTHHHHHHHHHHHHHHTCCCS-CHHHHT
T ss_pred ccHHHHHHHHHHHHhcCCccc-ChHHHh
Confidence 555555555555555555442 444433
No 104
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=8.9e-18 Score=143.56 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=112.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
..|++++ .++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|+++|.++..+|++++|+.+|++++.++
T Consensus 8 ~~~~~al-~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLN-EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHT-TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHH-cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4688999 9999999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
| +++.+++++|.++..+|++++|++.|++++++.|++++
T Consensus 86 p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 86 I--XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp T--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred C--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 9 89999999999999999999999999999999986543
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.75 E-value=5.8e-17 Score=147.06 Aligned_cols=190 Identities=16% Similarity=0.075 Sum_probs=147.4
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCC----CHHHHHH
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD----LAEEGAT 253 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~----~~~eA~~ 253 (446)
.+|++.|+++.+. +++.+++.||.++...+++++|+..|++++ +++++.+++.+|.++.. + ++++|+.
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~----~~g~~~a~~~lg~~y~~--~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAA----AQGDGDALALLAQLKIR--NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCHHHHHHHHHHTTS--STTSCCHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHc--CCCCCCHHHHHH
Confidence 3566777777764 678888888888888888888888888888 34677888877766544 4 7888888
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH--
Q 013299 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAE-- 329 (446)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P--~~~~a~~~lg~~~~~-- 329 (446)
+|+++++. .+ +.+++.+|.+|..-.. ..+++++|+.+|++++ +..| +++.++++||.+|..
T Consensus 75 ~~~~A~~~--g~-----~~a~~~Lg~~y~~g~g-------~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 75 LAEKAVEA--GS-----KSGEIVLARVLVNRQA-------GATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp HHHHHHHT--TC-----HHHHHHHHHHHTCGGG-------SSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHC--CC-----HHHHHHHHHHHHcCCC-------CccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCC
Confidence 88888762 22 5678888887754110 0246899999999999 9988 469999999999999
Q ss_pred --cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-c-----CHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013299 330 --QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-K-----RYEDAETILNAALDQTGKWEQGELLRTKAK 396 (446)
Q Consensus 330 --~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~al~~~p~~~~~~~~~~~a~ 396 (446)
.+++++|+.+|++|+++ |+++ .++++||.++... | ++++|+.+|++|++..+ ..+...++.
T Consensus 140 g~~~d~~~A~~~~~~A~~~-~~~~-~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~----~~A~~~l~~ 208 (212)
T 3rjv_A 140 HGPEDDVKASEYFKGSSSL-SRTG-YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF----DTGCEEFDR 208 (212)
T ss_dssp SSSCCHHHHHHHHHHHHHT-SCTT-HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC----HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCCH-HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHH
Confidence 88999999999999998 6775 8999999999865 3 89999999999998744 344444443
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.75 E-value=1.4e-19 Score=176.38 Aligned_cols=159 Identities=15% Similarity=0.017 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---------
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD--------- 316 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~--------- 316 (446)
+.+++|+..++++++..+ ..+.++..+|.++... +++++|+..|++++ +++|++
T Consensus 127 ~~~~~A~~~~~~a~~~~p-----~~a~~~~~~g~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~ 189 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-----EQSTIVKERGTVYFKE-----------GKYKQALLQYKKIV-SWLEYESSFSNEEAQ 189 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-----HHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHTTTCCCCCSHHHH
T ss_pred eecccccchhcCCHHHHH-----HHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHhhccccCChHHHH
Confidence 344555555555554321 1245667777776543 45777777777777 777777
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 317 ------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 317 ------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+.+++++|.++..+|++++|+..|+++++++|++ ..+|+++|.++..+|++++|+.+|+++++++| ++..+
T Consensus 190 ~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a 266 (336)
T 1p5q_A 190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAA 266 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHH
Confidence 6999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHH-HHHHHHHHHHHhhhhhh
Q 013299 391 LRTKAKVQLVQGQLKGA-VETYTHLLAALQVQTKT 424 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA-~~~~~~~l~l~~~~~~~ 424 (446)
+..++.++..+|++++| ...|+++++.....++.
T Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENK 301 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999 66889998877665544
No 107
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=1.5e-17 Score=157.88 Aligned_cols=199 Identities=13% Similarity=-0.018 Sum_probs=165.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
|.++.++..+|.++...|++++|+..|++++..+|+++.+|+++|.++...|++++|+..|++++ .++|+++.+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL--ELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCCHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~ 317 (446)
|.++. ..|++++|+..|+++++..|.+...+...++..+ ...++........ ...|.++
T Consensus 79 g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~ 137 (281)
T 2c2l_A 79 GQCQL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------------------RIAKKKRWNSIEE-RRIHQES 137 (281)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------------------HHHHHHHHHHHHH-TCCCCCC
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------------------HHHHHHHHHHHHH-HHHhhhH
Confidence 87755 5799999999999999975543221111222111 1234444555666 7889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhc
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQT 382 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~ 382 (446)
.+...++.++ .|++++|+..++++++++|++ ......++.++... +++++|...|.++.+..
T Consensus 138 ~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 138 ELHSYLTRLI--AAERERELEECQRNHEGHEDD-GHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhhhccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999888875 699999999999999999998 47777888777776 77999999999887643
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=2.5e-16 Score=152.26 Aligned_cols=239 Identities=9% Similarity=0.000 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHC-C-ChHHH
Q 013299 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGA-G-EDLVA 214 (446)
Q Consensus 138 ~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-~~~eA 214 (446)
.++|+.++ +.++..+|++..+|+..+.++...| .++++++.+++++..+|++..+|+..+.++... + +++++
T Consensus 70 se~AL~lt-----~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 70 SERALELT-----EIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp SHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CHHHHHHH-----HHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 45677664 6788999999999999999999999 599999999999999999999999999999998 8 99999
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE--------EGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~--------eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
+..+.+++ ..+|+|..++...+.+. ...+.++ +++++++++|+..+.+ ..+|.+.|.++...+.
T Consensus 145 L~~~~k~L--~~dpkNy~AW~~R~wvl-~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N-----~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 145 IEYIHGSL--LPDPKNYHTWAYLHWLY-SHFSTLGRISEAQWGSELDWCNEMLRVDGRN-----NSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHT--SSCTTCHHHHHHHHHHH-HHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHTTSTT
T ss_pred HHHHHHHH--HhCCCCHHHHHHHHHHH-HHhccccccchhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhccc
Confidence 99999999 99999999998776554 3344555 9999999999965544 5799999998876543
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhh
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL--------------------NAAHYYAKMLLKL 346 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~--------------------~~A~~~~~~al~l 346 (446)
... ....++++++++++++ .++|+|..+|+++..++...|+- .+-...+...+..
T Consensus 217 ~~~----~~~~~~eELe~~~~aI-~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 217 AET----SSRSLQDELIYILKSI-HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp CCC----CHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred ccc----chHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 100 1234789999999999 99999999999999998887753 3334444444433
Q ss_pred c------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHH
Q 013299 347 E------GGSNLKGWLLMARILSAQKRYEDAETILNAAL-DQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 347 ~------P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~~~~a~~ 397 (446)
. +.+ ..++..++.++..+|+.++|+.+|+... +.+| -....|..++..
T Consensus 292 ~~~~~~~~~s-~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp--ir~~yw~~~~~~ 346 (349)
T 3q7a_A 292 PLPEDTPLPV-PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ--MRAGYWEFRRRE 346 (349)
T ss_dssp CCCSSCCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG--GGHHHHHHHHHH
T ss_pred ccccccCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh--HHHHHHHHHHHh
Confidence 3 456 4899999999999999999999999987 6688 666777666543
No 109
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=9.8e-16 Score=167.46 Aligned_cols=302 Identities=12% Similarity=0.030 Sum_probs=219.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
.++|++.|+++...|+++||+..|.++ ++| .++..++.++.+.|++++|+.+|..+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA----------dD~--------------say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA----------DDP--------------SSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc----------CCh--------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578899999999999999999998663 122 24556778899999999999999998
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
.+. +++.. +...++.. |...+++++ +..+ + ..| +...+..+|.
T Consensus 1161 rk~----~~e~~--Idt~Lafa--------------------YAKl~rlee-le~f--------I-~~~-n~ad~~~iGd 1203 (1630)
T 1xi4_A 1161 RKK----ARESY--VETELIFA--------------------LAKTNRLAE-LEEF--------I-NGP-NNAHIQQVGD 1203 (1630)
T ss_pred Hhh----ccccc--ccHHHHHH--------------------HHhhcCHHH-HHHH--------H-hCC-CHHHHHHHHH
Confidence 887 21110 01112222 223355553 3322 1 224 4456668999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (446)
.+...|++++|+.+|.++ ..|..+|.+|...|++++|+..+++|. ++.+|...+..|.. .+++.
T Consensus 1204 ~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve-~~Ef~ 1267 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD-GKEFR 1267 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhh-hhHHH
Confidence 999999999999999985 578899999999999999999999976 23566666666655 56777
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013299 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE 329 (446)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~ 329 (446)
.|..+... +... +.-+..++..|. +.|.+++|+..+++++ .++|.+...+..||.++.+
T Consensus 1268 LA~~cgl~-Iiv~--------~deLeeli~yYe-----------~~G~feEAI~LlE~aL-~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1268 LAQMCGLH-IVVH--------ADELEELINYYQ-----------DRGYFEELITMLEAAL-GLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHh-hhcC--------HHHHHHHHHHHH-----------HcCCHHHHHHHHHHHh-ccChhHhHHHHHHHHHHHh
Confidence 77777653 2211 223334555553 4577999999999999 9999999999889888876
Q ss_pred --cCCHHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------cCCCCcHHH
Q 013299 330 --QRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKRYEDAETILNAALDQ------------TGKWEQGEL 390 (446)
Q Consensus 330 --~~~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------------~p~~~~~~~ 390 (446)
-+++-++++.|...+.+.| ++ ...|..+..+|.+.|+|+.|+..+-..... .+ .++++
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~-~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv--~n~el 1403 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQ-AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV--ANVEL 1403 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccc--ccHHH
Confidence 4689999999999988887 66 488999999999999999999544333222 34 68899
Q ss_pred HHHHHHHHHHhC---------------CHHHHHHHHH
Q 013299 391 LRTKAKVQLVQG---------------QLKGAVETYT 412 (446)
Q Consensus 391 ~~~~a~~~~~~g---------------~~~eA~~~~~ 412 (446)
++.-...+...+ +++.++..++
T Consensus 1404 yykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1404 YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 988888888666 6666666655
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.74 E-value=1.2e-17 Score=143.31 Aligned_cols=103 Identities=8% Similarity=0.025 Sum_probs=87.7
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..+++.+|.++... |++++|+..|++++ .++|+++.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 36 ~~~~~~lg~~~~~~-----------g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 36 MDDIYSYAYDFYNK-----------GRIEEAEVFFRFLC-IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 45566666666543 46788999999999 8999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
+ .+|+++|.++..+|++++|+.+|++++++.| +..
T Consensus 104 ~-~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~--~~~ 138 (151)
T 3gyz_A 104 Y-TPVFHTGQCQLRLKAPLKAKECFELVIQHSN--DEK 138 (151)
T ss_dssp C-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHH
T ss_pred c-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CHH
Confidence 5 9999999999999999999999999999988 543
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.74 E-value=1.4e-17 Score=140.85 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=109.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013299 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 382 (446)
..|++++ .++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|++++.++
T Consensus 5 ~~l~~al-~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLR-GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCT-TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHH-cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4788899 9999999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 383 p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
| +++.+++++|.++..+|++++|+..|++++++.|++++.
T Consensus 83 p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 83 I--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp T--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred C--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 9 899999999999999999999999999999999865443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.73 E-value=5e-17 Score=169.31 Aligned_cols=156 Identities=10% Similarity=-0.099 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
|++++|+..++++++..|.+ ..+++.+|.++... |++++|+..|++++ +++|+++.+++++|.
T Consensus 3 g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQD-----FVAWLMLADAELGM-----------GDTTAGEMAVQRGL-ALHPGHPEAVARLGR 65 (568)
T ss_dssp ------------------CC-----HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-TTSTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHH
Confidence 55667777777777743332 46777788777554 56899999999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh---C
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ---G 402 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~---g 402 (446)
++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+++++++.+| ++..+++++|.++..+ |
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999 59999999999999999999999999999999 8899999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 013299 403 QLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 403 ~~~eA~~~~~~~l~l~~~~ 421 (446)
++++|++.|+++++..|..
T Consensus 143 ~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp THHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHhcCCcc
Confidence 9999999999999998764
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=6.1e-17 Score=155.40 Aligned_cols=228 Identities=13% Similarity=0.040 Sum_probs=165.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI-AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
.|++++|..++. .+.+..+.. +.. .+++++|+..|+++ |.+|...|++++
T Consensus 4 ~~~~~eA~~~~~-----~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIA-----KAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHH-----HHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHH-----HHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHH
Confidence 457788887653 233333321 112 57888888888765 678888899999
Q ss_pred HHHHHHHHhcCCCCCCC------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhh
Q 013299 214 ALNLLRTLLSGSEDPKC------LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~------~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~ 286 (446)
|+..|++++ .+.|.. ..++..+|. ++...|++++|+.+|+++++..... +......++..+|.+|..
T Consensus 55 A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~-~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--- 128 (307)
T 2ifu_A 55 AKDAYLQEA--EAHANNRSLFHAAKAFEQAGM-MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--- 128 (307)
T ss_dssp HHHHHHHHH--HHHHHTTCHHHHHHHHHHHHH-HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHH--HHHHHcCCHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc---
Confidence 999999988 665432 234444444 4555788999999999998864321 122346778889988854
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGW 355 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~ 355 (446)
|++++|+.+|++++ ++.|.+ ..++.++|.++..+|++++|+.+|++++.+.|++. ..++
T Consensus 129 ---------g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 129 ---------LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp ---------TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 46899999999999 998765 67899999999999999999999999999987652 2478
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHHHHHHHHHHHhCCHHHHHH
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRTKAKVQLVQGQLKGAVE 409 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~~~~a~~~~~~g~~~eA~~ 409 (446)
..+|.++..+|++++|+.+|++++ .+|.... ...+..++..+ ..|+.+....
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 889999999999999999999999 9983211 12233444444 5677654444
No 114
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=3.5e-18 Score=169.06 Aligned_cols=302 Identities=11% Similarity=0.007 Sum_probs=160.7
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
++|..+|.++.+.|++++|++.|.++- +|. ++...+..+...|++++|+.+++.++
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~----------D~~--------------~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD----------DPS--------------SYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC----------CHH--------------HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 578889999999999999999986531 222 23334456777899999999888888
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (446)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (446)
+. .++. .+. ..+...|...|+++++...+ ..| +..+|..+|..
T Consensus 89 k~----~~~~--~i~--------------------~~Li~~Y~Klg~l~e~e~f~----------~~p-n~~a~~~IGd~ 131 (449)
T 1b89_A 89 KK----ARES--YVE--------------------TELIFALAKTNRLAELEEFI----------NGP-NNAHIQQVGDR 131 (449)
T ss_dssp ----------------------------------------------CHHHHTTTT----------TCC------------
T ss_pred Hh----Cccc--hhH--------------------HHHHHHHHHhCCHHHHHHHH----------cCC-cHHHHHHHHHH
Confidence 75 1110 011 12223455677888876542 224 44699999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013299 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE 250 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e 250 (446)
+...|++++|..+|.++ ..|..||.++.++|+|++|+..|+++. ++..|......|.. .|+++.
T Consensus 132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~-~~ef~l 195 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD-GKEFRL 195 (449)
T ss_dssp -----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHH-cCcHHH
Confidence 99999999999999977 478899999999999999999999974 46667666667766 688988
Q ss_pred HHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013299 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE- 329 (446)
Q Consensus 251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~- 329 (446)
|..+....+ .++ .-...+..+|. +.|++++|+..+++++ .++|.+..++..||.+|.+
T Consensus 196 A~~~~l~L~----~~a-----d~l~~lv~~Ye-----------k~G~~eEai~lLe~aL-~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 196 AQMCGLHIV----VHA-----DELEELINYYQ-----------DRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHTTTTTT----TCH-----HHHHHHHHHHH-----------HTTCHHHHHHHHHHHT-TSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH----hCH-----hhHHHHHHHHH-----------HCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHhc
Confidence 876665422 111 11122344443 4578999999999999 9999999999999999886
Q ss_pred -cCCHHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------cCCCCcHHHH
Q 013299 330 -QRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKRYEDAETILNAALDQ------------TGKWEQGELL 391 (446)
Q Consensus 330 -~~~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------------~p~~~~~~~~ 391 (446)
.+++.++++.|...+.+.| +++ ..|..+..+|...++|+.|+..+-..... .+ .|.+++
T Consensus 255 ~p~k~~ehl~~~~~~ini~k~~~~~~~~-~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv--~n~ely 331 (449)
T 1b89_A 255 KPQKMREHLELFWSRVNIPKVLRAAEQA-HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV--ANVELY 331 (449)
T ss_dssp CHHHHHHHHHHHSTTSCHHHHHHHHHTT-TCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHC--SSTHHH
T ss_pred CHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhch--hHHHHH
Confidence 5689999999999999999 774 89999999999999999999877655433 45 678888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
+.....+. +....++..+..++
T Consensus 332 Ykai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 332 YRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHH--hcCHHHHHHHHHHH
Confidence 87766666 44556666666666
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=1.3e-17 Score=156.45 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=159.4
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHH-------
Q 013299 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHL-------SFAFSIAGDLSSLATQIEELLPGIINRKERYHI------- 200 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~l-------g~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 200 (446)
.++.++|...| ..++..+|+.+++|..+ +.++...+++.+++..+++++.+.|+...++++
T Consensus 19 ~~d~~~A~~~F-----~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 19 PMSEARSLDLF-----TEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred CCCHHHHHHHH-----HHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 46788998876 66788999999999999 899999999999999999999999888777666
Q ss_pred --------------HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Q 013299 201 --------------LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC 266 (446)
Q Consensus 201 --------------lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~ 266 (446)
++.+|...|+|++|...|+.++ ...|+++ +.+..+.+++. .+++++|+.++++++. .++
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~--~~~p~~~-~~~~~a~l~~~-~~r~~dA~~~l~~a~~-~~d-- 166 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP--VAGSEHL-VAWMKAVVYGA-AERWTDVIDQVKSAGK-WPD-- 166 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC--CTTCHHH-HHHHHHHHHHH-TTCHHHHHHHHTTGGG-CSC--
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCchH-HHHHHHHHHHH-cCCHHHHHHHHHHhhc-cCC--
Confidence 8899999999999999999999 8899988 77777766655 6888999999987766 221
Q ss_pred chhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013299 267 DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN--MR-DLSILYRLSLEYAEQRKLNAAHYYAKML 343 (446)
Q Consensus 267 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~--P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a 343 (446)
+.....+++++|.++.. +|++++|+.+|++++ ... |. .+++++++|.++..+|+.++|...|+++
T Consensus 167 ~~~~~~a~~~LG~al~~-----------LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAAN-----------LALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11224578888888754 356788888888887 554 55 6678888888888888888888888888
Q ss_pred HhhcCCCCHHHHHHH
Q 013299 344 LKLEGGSNLKGWLLM 358 (446)
Q Consensus 344 l~l~P~~~~~~~~~l 358 (446)
+..+|+ + .++..|
T Consensus 235 ~a~~P~-~-~~~~aL 247 (282)
T 4f3v_A 235 QTTHPE-P-KVAAAL 247 (282)
T ss_dssp HHHSCC-H-HHHHHH
T ss_pred HhcCCc-H-HHHHHH
Confidence 888887 5 665554
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=1.6e-17 Score=159.51 Aligned_cols=207 Identities=13% Similarity=0.021 Sum_probs=166.0
Q ss_pred cCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-CCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013299 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYG-AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (446)
Q Consensus 174 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (446)
.|++++|.+.++++.+..+.. ++. .+++++|+..|.++. . ++...|++++|+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~--~---------------~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAA--V---------------AFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHH--H---------------HHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHH--H---------------HHHHcCCHHHHH
Confidence 467889999998887766542 122 588999999999876 1 233468999999
Q ss_pred HHHHHHHHHcCCC-cchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--C----HHHHHHHHH
Q 013299 253 TFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--D----LSILYRLSL 325 (446)
Q Consensus 253 ~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~----~~a~~~lg~ 325 (446)
.+|.++++..+.. +......++..+|.+|..+ |++++|+.+|++++ ++.+. + ..++.++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-----------QRMPEAVQYIEKAS-VMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCGGGGHHHHHHHH-HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Confidence 9999999965321 1223466888899988664 56899999999999 88543 2 468899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc----HHHHHHHHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----GELLRTKAK 396 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~~~~a~ 396 (446)
+|.. |++++|+.+|++|+.+.|... ..++.++|.++..+|+|++|+.+|++++++.|+... ...+..+|.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 9998 999999999999999987541 368999999999999999999999999998762111 347888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 397 VQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++..+|++++|+..|++++ +.|..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 9999999999999999999 87753
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.69 E-value=1.1e-15 Score=125.59 Aligned_cols=134 Identities=22% Similarity=0.232 Sum_probs=125.1
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
.+++.+|.++... |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS- 68 (136)
T ss_dssp HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-
T ss_pred cHHHHHHHHHHHc-----------CcHHHHHHHHHHHH-HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-
Confidence 3577788877554 57899999999999 9999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..+|..+|.++...|++++|+.+++++++..| ++..+++.+|.++...|++++|+..+++++++.|.
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 59999999999999999999999999999999 88999999999999999999999999999998764
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.69 E-value=5.3e-17 Score=138.70 Aligned_cols=116 Identities=15% Similarity=0.021 Sum_probs=82.6
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 182 TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 182 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
..|++++.++|+++.+++.+|.++...|++++|+..|++++ ..+|+++.+++.+|.++.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~------------------- 66 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC--VLDHYDSRFFLGLGACRQ------------------- 66 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHH--HcCcccHHHHHHHHHHHH-------------------
Confidence 45677777777777777777777777777777777777777 677776665554433321
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
. .|++++|+.+|++++ +++|+++.+++++|.++..+|++++|+..|+
T Consensus 67 ---------------------~-----------~g~~~~A~~~~~~al-~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 67 ---------------------A-----------MGQYDLAIHSYSYGA-VMDIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp ---------------------H-----------TTCHHHHHHHHHHHH-HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------H-----------HhhHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 134667777777777 7777777777888888777888888888888
Q ss_pred HHHhhcCCCC
Q 013299 342 MLLKLEGGSN 351 (446)
Q Consensus 342 ~al~l~P~~~ 351 (446)
++++++|+++
T Consensus 114 ~al~~~p~~~ 123 (148)
T 2vgx_A 114 LAQELIANXP 123 (148)
T ss_dssp HHHHHHTTCG
T ss_pred HHHHHCcCCC
Confidence 8887777764
No 119
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=4.3e-16 Score=133.04 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-------CCHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh---
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-------SNLK-----GWLLMARILSAQKRYEDAETILNAALDQ--- 381 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-------~~~~-----~~~~la~~~~~~g~~~eA~~~~~~al~~--- 381 (446)
+..+.++|..+...|++++|+..|++|++++|+ + .. +|.++|.++..+|+|++|+..|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~-~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD-HAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh-hccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 466789999999999999999999999999999 4 23 9999999999999999999999999999
Q ss_pred ----cCCCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 013299 382 ----TGKWEQGELL----RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 382 ----~p~~~~~~~~----~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
+| ++..+| +++|.++..+|++++|+++|++++++.|++...
T Consensus 90 ~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99 999999 999999999999999999999999999875443
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.68 E-value=3.5e-18 Score=166.42 Aligned_cols=200 Identities=11% Similarity=-0.001 Sum_probs=160.4
Q ss_pred CCcHHHHHHHHHHHHHHH----HhhcCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHhhCCCCCCcHHHH
Q 013299 135 RNNIEEAILLLMILLRKV----ALKRIEWDPSILDHLSFAFS------------IAGDLSSLATQIEELLPGIINRKERY 198 (446)
Q Consensus 135 ~~~~~eA~~~l~~~~~~~----~l~~~p~~~~~~~~lg~~l~------------~~~~~~~A~~~~~~al~~~p~~~~~~ 198 (446)
.+.+++|+..+ .. .+...|+. +|...|.... ..+++++|++.|++++..+|+++.+|
T Consensus 78 ~~~~e~al~~~-----~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~ 150 (336)
T 1p5q_A 78 PYGLERAIQRM-----EKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV 150 (336)
T ss_dssp CHHHHHHHTTC-----CTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred chHHHHHHhcC-----CCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence 34567776643 22 34556665 5555565443 45677888889999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013299 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (446)
Q Consensus 199 ~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (446)
+++|.+++..|++++|+..|++++ .++|++... .. +++ .+. ......+++++|
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~-----------~~--~~~-------~~~-----~~~~~~~~~nla 203 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIV--SWLEYESSF-----------SN--EEA-------QKA-----QALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH--HHTTTCCCC-----------CS--HHH-------HHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH--HHhhccccC-----------Ch--HHH-------HHH-----HHHHHHHHHHHH
Confidence 999999999999999999999999 889987531 00 111 110 012356889999
Q ss_pred chhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 013299 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (446)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (446)
.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++..+
T Consensus 204 ~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l 270 (336)
T 1p5q_A 204 MCHLKL-----------QAFSAAIESCNKAL-ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQL 270 (336)
T ss_dssp HHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHH
T ss_pred HHHHHc-----------CCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHH
Confidence 999765 57899999999999 9999999999999999999999999999999999999999 5999999
Q ss_pred HHHHHHccCHHHH-HHHHHHHHhh
Q 013299 359 ARILSAQKRYEDA-ETILNAALDQ 381 (446)
Q Consensus 359 a~~~~~~g~~~eA-~~~~~~al~~ 381 (446)
+.++..+|++++| ...|++++..
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 4577777754
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.3e-16 Score=127.39 Aligned_cols=121 Identities=13% Similarity=0.029 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~ 393 (446)
|.++..++.+|..+...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+..++++++++| +++.+++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 77 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIR 77 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHH
Confidence 5567889999999999999999999999999999999 59999999999999999999999999999999 89999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhcc
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRV 441 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 441 (446)
+|.++..+|++++|+..|++++++.|+.. ..|....+.....++
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTKDAEVN----NGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH----TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhCcccC----CchhHHHHHHHHHHH
Confidence 99999999999999999999999996543 224444444444443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.67 E-value=2.4e-15 Score=129.02 Aligned_cols=135 Identities=13% Similarity=0.032 Sum_probs=123.0
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+..++.+|.++... |++++|+..|++++ +++|+++.+++++|.++...|++++|+..+++++.++|++
T Consensus 13 ~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 13 AEELKTQANDYFKA-----------KDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 56778888887654 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT--KAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~--~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..+|..+|.++..+|++++|+.+++++++.+| ++..++.. ++..+...|++++|++.+.++.++.+.
T Consensus 81 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 81 -IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 59999999999999999999999999999999 78888744 555588999999999999999988765
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=2.9e-16 Score=132.78 Aligned_cols=125 Identities=16% Similarity=0.006 Sum_probs=85.1
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 182 TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 182 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
..|++++.++|+++.+++.+|.++...|++++|+..|++++ ..+|+++.+++.+|.++..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~------------------ 64 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC--MLDHYDARYFLGLGACRQS------------------ 64 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHH------------------
Confidence 45677777777777777777777777777777777777777 6777766655544433211
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
.|++++|+.+|++++ .++|+++.+++++|.++..+|++++|+..|+
T Consensus 65 ---------------------------------~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 65 ---------------------------------LGLYEQALQSYSYGA-LMDINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------------------HhhHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 134677777777777 7788888888888888888888888888888
Q ss_pred HHHhhcCCCCHHHHHHHHHH
Q 013299 342 MLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~ 361 (446)
+++.++|+++ ..+.....+
T Consensus 111 ~al~~~p~~~-~~~~~~~~~ 129 (142)
T 2xcb_A 111 SARALAAAQP-AHEALAARA 129 (142)
T ss_dssp HHHHHHHTCG-GGHHHHHHH
T ss_pred HHHHhCCCCc-chHHHHHHH
Confidence 8888887764 554444333
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=1.5e-15 Score=137.63 Aligned_cols=180 Identities=9% Similarity=-0.065 Sum_probs=154.8
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhch
Q 013299 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (446)
Q Consensus 212 ~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~ 291 (446)
.+|+..|+++. . .+++.+++.+|.++.. .+++++|+.+|+++++. .+ +.+++.+|.+|...+.
T Consensus 3 ~eA~~~~~~aa--~--~g~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~--g~-----~~a~~~lg~~y~~~g~----- 65 (212)
T 3rjv_A 3 TEPGSQYQQQA--E--AGDRRAQYYLADTWVS-SGDYQKAEYWAQKAAAQ--GD-----GDALALLAQLKIRNPQ----- 65 (212)
T ss_dssp -CTTHHHHHHH--H--TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHT--TC-----HHHHHHHHHHTTSSTT-----
T ss_pred chHHHHHHHHH--H--CCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHcCCC-----
Confidence 47889999999 3 4889999988887665 68999999999999983 22 5789999999876211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHH-
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSA- 364 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l~P--~~~~~~~~~la~~~~~- 364 (446)
..++++|+.+|++++ + ++++.++++||.+|.. .+++++|+.+|++|+...| ++ ..++++||.++..
T Consensus 66 ---~~~~~~A~~~~~~A~-~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~-~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 66 ---QADYPQARQLAEKAV-E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA-VDAQMLLGLIYASG 138 (212)
T ss_dssp ---SCCHHHHHHHHHHHH-H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH-HHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch-HHHHHHHHHHHHcC
Confidence 125899999999998 5 6899999999999998 8999999999999999988 45 4999999999999
Q ss_pred ---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHHHH
Q 013299 365 ---QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-G-----QLKGAVETYTHLLAAL 418 (446)
Q Consensus 365 ---~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g-----~~~eA~~~~~~~l~l~ 418 (446)
.+++++|+.+|+++++. | +++.+++++|.++... | ++++|+..|+++.+.-
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~-~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL-S--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT-S--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 89999999999999998 5 5778999999999764 3 8999999999999874
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1e-15 Score=159.17 Aligned_cols=195 Identities=10% Similarity=0.005 Sum_probs=167.8
Q ss_pred HHhcCCH-HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCC----------hHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 171 FSIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGE----------DLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 171 l~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
+...|++ ++|++.+++++.++|++..+|+..+.++...|+ +++|+..+++++ ..+|++..+|...+.
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l--~~~pK~y~aW~hR~w 115 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL--RVNPKSYGTWHHRCW 115 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH--HhCCCCHHHHHHHHH
Confidence 3445544 788999999999999999999999999999998 899999999999 889999888877655
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a 319 (446)
++. ..+. .+++++++.+.+++ ++||+|..+
T Consensus 116 ~l~-~l~~------------------------------------------------~~~~~el~~~~k~l-~~d~~N~~a 145 (567)
T 1dce_A 116 LLS-RLPE------------------------------------------------PNWARELELCARFL-EADERNFHC 145 (567)
T ss_dssp HHH-TCSS------------------------------------------------CCHHHHHHHHHHHH-HHCTTCHHH
T ss_pred HHH-Hccc------------------------------------------------ccHHHHHHHHHHHH-hhccccccH
Confidence 432 1210 02578999999999 999999999
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHhhcCC
Q 013299 320 LYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ--------------KRYEDAETILNAALDQTGK 384 (446)
Q Consensus 320 ~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~~~p~ 384 (446)
|++.|.++...| .++++++++.++++.+|.+ ..+|++++.++..+ +++++|++++++|+..+|
T Consensus 146 W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P- 223 (567)
T 1dce_A 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP- 223 (567)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-
Confidence 999999999999 9999999999999999999 59999999999885 778999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHhh
Q 013299 385 WEQGELLRTKAKVQLVQGQLKG------------AVETYTHLLAALQV 420 (446)
Q Consensus 385 ~~~~~~~~~~a~~~~~~g~~~e------------A~~~~~~~l~l~~~ 420 (446)
++..+|++++.++...|++++ |+..|.+++.+.|.
T Consensus 224 -~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 224 -NDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp -SCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred -CCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 899999999999999998766 56667777776654
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.67 E-value=4.4e-16 Score=136.27 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH-HHHccCH--HHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-LSAQKRY--EDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~-~~~~g~~--~eA 371 (446)
.+++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKI-RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHH-HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcchHHH
Confidence 467899999999999 9999999999999999999999999999999999999999 5999999999 8899999 999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
+.+++++++.+| ++..+++.+|.++...|++++|+..|++++++.|.+
T Consensus 101 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999 899999999999999999999999999999998764
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=2.9e-16 Score=148.88 Aligned_cols=198 Identities=10% Similarity=0.010 Sum_probs=157.3
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|+++.+++.+|.++...|++++|+..|++++ ..+|+++.++..+|.++. ..|++++|+..++++++..|.+ .
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~-----~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAI--TRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQS-----V 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTC-----H
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCC-----H
Confidence 6788999999999999999999999999999 899999999988877655 4789999999999999954433 6
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
.+++.+|.++... |++++|+..|++++ +++|+++..+........ +..++...........|.++
T Consensus 73 ~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 137 (281)
T 2c2l_A 73 KAHFFLGQCQLEM-----------ESYDEAIANLQRAY-SLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQES 137 (281)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhH
Confidence 7899999998664 57899999999999 999987544333322222 23333444444456677775
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLAA 417 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g~~~eA~~~~~~~l~l 417 (446)
.....++.++ .|++++|+..++++++.+| ++......++.++... +++++|.+.|+++.+.
T Consensus 138 -~i~~~l~~l~--~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 138 -ELHSYLTRLI--AAERERELEECQRNHEGHE--DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -HHHHHHHHHH--HHHHHHHHTTTSGGGTTTS--CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred -HHHHHHHHHH--HHHHHHHHHHHHhhhcccc--chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888887765 7999999999999999999 8888877777777666 7788899988887653
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.3e-15 Score=123.02 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=105.9
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+..+..+|..+... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 4 a~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 4 AEEARLEGKEYFTK-----------SDWPNAVKAYTEMI-KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 56788888888654 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc------CCCCcHHHHHHHHHHHHH
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQT------GKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~~~~a~~~~~ 400 (446)
..+|..+|.++..+|++++|+..++++++++ | ++..++..++.+...
T Consensus 72 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p--~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 72 -VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS--SAREIDQLYYKASQQ 124 (126)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch--hHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999 8 888888888776654
No 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.63 E-value=3.2e-15 Score=129.30 Aligned_cols=106 Identities=14% Similarity=-0.019 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
+|.++.+++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|+|++|+.+|+++++++| ++..+|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 83 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-PIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWS 83 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 45556666777777777777777777777777777776 36777777777777777777777777777777 6667777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++|.++..+|++++|+..|++++++.|++
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 77777777777777777777777766543
No 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.63 E-value=1.1e-14 Score=119.37 Aligned_cols=133 Identities=21% Similarity=0.262 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013299 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (446)
Q Consensus 196 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (446)
++|+.+|.++...|++++|+..|++++ ..+|+++.++..++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a------------------------------------- 42 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKAL--ELDPRSAEAWYNLG------------------------------------- 42 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHH-------------------------------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHH--HcCCcchhHHHHHH-------------------------------------
Confidence 456777777777777777777777777 56666554443332
Q ss_pred HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH
Q 013299 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (446)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 355 (446)
.++.. .+++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++...|++ ..++
T Consensus 43 ---~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 106 (136)
T 2fo7_A 43 ---NAYYK-----------QGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAW 106 (136)
T ss_dssp ---HHHHH-----------HTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred ---HHHHH-----------hcCHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHH
Confidence 22221 234677777777788 7888888888888888888888888888888888888877 4788
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 356 LLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 356 ~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..+|.++...|++++|+.++++++..+|
T Consensus 107 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 107 YNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888888888888887777
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=1.6e-15 Score=125.86 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-----cHH
Q 013299 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE-----QGE 389 (446)
Q Consensus 315 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-----~~~ 389 (446)
+.+.++.++|.++..+|++++|+.+|++|++++|++ ..+|.++|.++..+|+|++|+..++++++++|+.. ...
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 445678899999999999999999999999999999 59999999999999999999999999999987211 145
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
+++++|.++..+|++++|++.|++++++.|
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 788999999999999999999999999875
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.62 E-value=2.4e-14 Score=136.09 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=135.3
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
|.....+...+..+...|++++|+..+++++ ...|........ .
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l--~~~~~~~~~~~~----------------------------------~ 115 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQF----------------------------------L 115 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTCCCCHHHHHH----------------------------------H
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--ccccCChhHHHH----------------------------------H
Confidence 3445566777888889999999999999999 666654432110 1
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLL- 344 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al- 344 (446)
..++.+|.++... |++++|+..|++++ ++.+.. ..+++++|.+|..+|++++|+.+|++|+
T Consensus 116 ~~~~~~~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 116 QWQYYVAAYVLKK-----------VDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHTS-----------SCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----------CCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223344444332 35677788888777 765544 5688999999999999999999999999
Q ss_pred --hhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHH-HHHHHHH
Q 013299 345 --KLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGA-VETYTHL 414 (446)
Q Consensus 345 --~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~eA-~~~~~~~ 414 (446)
...|+++ ..++.++|.++..+|+|++|+.+++++++..++.+ ...+++++|.++..+|++++| ...|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455531 15888999999999999999999999998754101 278899999999999999999 7789999
Q ss_pred HHHHhhh
Q 013299 415 LAALQVQ 421 (446)
Q Consensus 415 l~l~~~~ 421 (446)
+.+....
T Consensus 264 l~~~~~~ 270 (293)
T 2qfc_A 264 SFFFDIL 270 (293)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9987543
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=5.3e-15 Score=132.89 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=119.5
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
..++.+|.++... |++++|+..|++++ . | ++.+++++|.++...|++++|+..|++++.++|++
T Consensus 7 ~~~~~~g~~~~~~-----------~~~~~A~~~~~~a~-~--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 70 (213)
T 1hh8_A 7 ISLWNEGVLAADK-----------KDWKGALDAFSAVQ-D--P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL- 70 (213)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHTSS-S--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHHh-----------CCHHHHHHHHHHHc-C--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-
Confidence 4566777777554 57899999999876 3 3 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG----------------ELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~----------------~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
..+|.++|.++..+|++++|+.+++++++..| ++. .+++++|.++..+|++++|++.|++++
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR--GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT--TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 59999999999999999999999999999888 544 999999999999999999999999999
Q ss_pred HHHhhh
Q 013299 416 AALQVQ 421 (446)
Q Consensus 416 ~l~~~~ 421 (446)
++.|+.
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 998864
No 134
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.62 E-value=6.1e-15 Score=122.32 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=93.9
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+.++..+|.++..+ |++++|+.+|++|+ +++|+++.+++++|.+|..+|++++|+..|+++++++|+
T Consensus 7 ~A~a~~~lG~~~~~~-----------~~~~~A~~~y~~Al-~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQ-----------KDFEKAHVHYDKAI-ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 366788999998765 57999999999999 999999999999999999999999999999999999998
Q ss_pred CC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 350 SN------LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 350 ~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+. +.++..+|.++..+|++++|+.+|++++...|
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 63 24788999999999999999999999999988
No 135
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.62 E-value=4.1e-15 Score=126.71 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 013299 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL----------NAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (446)
Q Consensus 292 ~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~----------~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (446)
.++.+++++|+..+++++ +++|+++++|+++|.++...+++ ++|+..|++|++++|++ ..+|+++|.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai-~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTY-KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Confidence 367789999999999999 99999999999999999998875 59999999999999999 5999999999
Q ss_pred HHHcc-----------CHHHHHHHHHHHHhhcCCCCcH
Q 013299 362 LSAQK-----------RYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 362 ~~~~g-----------~~~eA~~~~~~al~~~p~~~~~ 388 (446)
|..+| ++++|+.+|++|++++| ++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P--~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--DNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC--CCH
Confidence 99885 89999999999999999 764
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.62 E-value=3.9e-15 Score=122.47 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
.++.+|.++...|++++|+..|+++++++|++ ..+|+.+|.++..+|++++|+..|+++++++| ++..+++.+|.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 46788888888888888888888888888888 48888888888888888888888888888888 7888888888888
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
...|++++|+..|++++++.|++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888877543
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.61 E-value=1.5e-14 Score=120.27 Aligned_cols=108 Identities=13% Similarity=-0.051 Sum_probs=102.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
..+|.++.+++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+.+++++++.+| +++.+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 79 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKA 79 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHH
Confidence 4678999999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++.+|.++...|++++|+..|++++++.|++
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 9999999999999999999999999999874
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1.7e-14 Score=149.91 Aligned_cols=168 Identities=10% Similarity=-0.031 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013299 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (446)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~ 326 (446)
..++|+..++++++..|.+ ..+|+..|.++...++... .......+++++..+++++ +.+|+++.+|++.+++
T Consensus 44 ~~eeal~~~~~~l~~nP~~-----~taW~~R~~~l~~l~~~~~-~~~~~~~~~~eL~~~~~~l-~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 44 LDESVLELTSQILGANPDF-----ATLWNCRREVLQHLETEKS-PEESAALVKAELGFLESCL-RVNPKSYGTWHHRCWL 116 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHhcccccc-hhhhhhhHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Confidence 3345555555555533222 3455555555543322000 0011234899999999999 9999999999999999
Q ss_pred HHHcC--CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh--
Q 013299 327 YAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK-RYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-- 401 (446)
Q Consensus 327 ~~~~~--~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-- 401 (446)
+...+ ++++|+..+.++++++|.+ ..+|...++++...| .+++++++++++++.+| .+..+|.+++.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p--~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC--CCHHHHHHHHHHHHHHSC
T ss_pred HHHcccccHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--CCccHHHHHHHHHHhhcc
Confidence 99999 7799999999999999999 699999999999999 89999999999999999 8999999999999885
Q ss_pred ------------CCHHHHHHHHHHHHHHHhhhhhh
Q 013299 402 ------------GQLKGAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 402 ------------g~~~eA~~~~~~~l~l~~~~~~~ 424 (446)
++++++++.+.+++.+.|++..+
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~sa 228 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 228 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCCCCccH
Confidence 66899999999999998654433
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.61 E-value=7.3e-15 Score=127.01 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=104.3
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+.+++.+|.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|++++.++|+
T Consensus 10 ~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMAR-----------KEYSKAIDLYTQAL-SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 467888899888664 57899999999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+ ..+|+++|.++..+|++++|+.+|+++++++| ++..+++.++...
T Consensus 78 ~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 78 Y-SKAWSRLGLARFDMADYKGAKEAYEKGIEAEG--NGGSDAMKRGLET 123 (164)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CchHHHHHHHHHH
Confidence 9 59999999999999999999999999999999 7777777665543
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.60 E-value=8.6e-16 Score=137.22 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.+++++|.++..+|++++|+.+|++++.++|++ ..+++.+|.++..+|++++|+.+|+++++++| ++..++..++.+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHH
Confidence 788999999999999999999999999999999 59999999999999999999999999999999 899999999999
Q ss_pred HHHhCCHHHHH-HHHHHHHH
Q 013299 398 QLVQGQLKGAV-ETYTHLLA 416 (446)
Q Consensus 398 ~~~~g~~~eA~-~~~~~~l~ 416 (446)
+...|+.+++. ..|.+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99998888877 55555544
No 141
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.60 E-value=2.1e-14 Score=128.90 Aligned_cols=165 Identities=10% Similarity=0.006 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (446)
..++.+|.++...|++++|+..|++++ +| ++.+|+++|.++...|++++|+..|++++ ..+|+++.+++.+|.++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSI--NRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCccchHHHHHHHHHH
Confidence 346789999999999999999999997 33 78999999999999999999999999999 89999999988887765
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 013299 242 GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILY 321 (446)
Q Consensus 242 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~ 321 (446)
.. .|++++|+.+|+++++..|.+.. ..+. ...+ ..+|.++.+++
T Consensus 82 ~~-~~~~~~A~~~~~~al~~~~~~~~-----------~~~~-----------------------~~~~-~~~~~~~~~~~ 125 (213)
T 1hh8_A 82 YQ-TEKYDLAIKDLKEALIQLRGNQL-----------IDYK-----------------------ILGL-QFKLFACEVLY 125 (213)
T ss_dssp HH-TTCHHHHHHHHHHHHHTTTTCSE-----------EECG-----------------------GGTB-CCEEEHHHHHH
T ss_pred HH-cccHHHHHHHHHHHHHhCCCccH-----------HHHH-----------------------Hhcc-ccCccchHHHH
Confidence 54 68888888888888885544321 0011 1122 56677789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
++|.++..+|++++|+..|++++.++|++. . ++.++|+..+.+...
T Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~------------~~~~~a~~~~~~~~~ 171 (213)
T 1hh8_A 126 NIAFMYAKKEEWKKAEEQLALATSMKSEPR-H------------SKIDKAMECVWKQKL 171 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSGG-G------------GHHHHHHHHHHTTCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCcccc-c------------chHHHHHHHHHhccc
Confidence 999999999999999999999999999863 2 455566666655443
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-14 Score=119.23 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=109.4
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
....+++.+|.++... +++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++.++|
T Consensus 14 ~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 81 (133)
T 2lni_A 14 DLALMVKNKGNECFQK-----------GDYPQAMKHYTEAI-KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81 (133)
T ss_dssp CHHHHHHHHHHHHHHT-----------TCSHHHHHHHHHHH-TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3467888899888654 56899999999999 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013299 349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 349 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 403 (446)
++ ..+|..+|.++..+|++++|+.+++++++.+| ++..++..++.++..+|+
T Consensus 82 ~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 TF-IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS--SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGTHHHHHHHHHHHHHTC
T ss_pred Cc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcC
Confidence 98 59999999999999999999999999999999 888999999999988774
No 143
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.60 E-value=7.1e-16 Score=152.63 Aligned_cols=291 Identities=14% Similarity=0.059 Sum_probs=136.5
Q ss_pred hhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCC
Q 013299 18 KCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLD 97 (446)
Q Consensus 18 ~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~ 97 (446)
..+...|++++|.+.++++ . +|+ ++..+|.++.+.|++++|+..|.++- +
T Consensus 11 ~ll~~~~~ld~A~~fae~~-~---------~~~--------------vWs~La~A~l~~g~~~eAIdsfika~------D 60 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC-N---------EPA--------------VWSQLAKAQLQKGMVKEAIDSYIKAD------D 60 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC-C---------ChH--------------HHHHHHHHHHHcCCHHHHHHHHHcCC------C
Confidence 3456788888888887765 1 233 55677889999999999999997741 3
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCH
Q 013299 98 AETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDL 177 (446)
Q Consensus 98 ~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~ 177 (446)
|.... ..+..+...|++++|+..+ +.+.+. ..++.+...++.++.+.|++
T Consensus 61 ~~~y~------------------------~V~~~ae~~g~~EeAi~yl-----~~ark~-~~~~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 61 PSSYM------------------------EVVQAANTSGNWEELVKYL-----QMARKK-ARESYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHH------------------------HHHHHHHhCCCHHHHHHHH-----HHHHHh-CccchhHHHHHHHHHHhCCH
Confidence 32211 1122344578899999865 333333 33477888999999999999
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASR 257 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~ 257 (446)
+++.+.++. | +..+|..+|..+...|+|++|...|.++- .+..++ .|+.++|++++|++.+++
T Consensus 111 ~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA-~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 111 AELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLA-STLVHLGEYQAAVDGARK 173 (449)
T ss_dssp HHHTTTTTC-----C-----------------CTTTHHHHHHHTT----------CHHHHH-HHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHH-HHHHHhccHHHHHHHHHH
Confidence 999887752 4 44699999999999999999999999863 233344 456678999999999999
Q ss_pred HHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 013299 258 ALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAH 337 (446)
Q Consensus 258 al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~ 337 (446)
+.. ...|...+.++... |+++.|..+... + ..+|++ ...+...|...|++++|+
T Consensus 174 A~~----------~~~Wk~v~~aCv~~-----------~ef~lA~~~~l~-L-~~~ad~---l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 174 ANS----------TRTWKEVCFACVDG-----------KEFRLAQMCGLH-I-VVHADE---LEELINYYQDRGYFEELI 227 (449)
T ss_dssp HTC----------HHHHHHHHHHHHHT-----------TCHHHHHHTTTT-T-TTCHHH---HHHHHHHHHHTTCHHHHH
T ss_pred cCC----------chhHHHHHHHHHHc-----------CcHHHHHHHHHH-H-HhCHhh---HHHHHHHHHHCCCHHHHH
Confidence 921 45677766666443 568899887775 5 466655 446888999999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 338 YYAKMLLKLEGGSNLKGWLLMARILSA--QKRYEDAETILNAALDQTGK---WEQGELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 338 ~~~~~al~l~P~~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~p~---~~~~~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
.++++++.++|.+ ...|..+|.++.+ .|+..+++..|...+.+.|- -++...|..+..++...|+++.|+...-
T Consensus 228 ~lLe~aL~le~ah-~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 228 TMLEAALGLERAH-MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHTTSTTCC-HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCcHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 9999999999999 6999999998866 46788888888766655430 0245678889999999999999987543
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.59 E-value=3.8e-14 Score=134.71 Aligned_cols=176 Identities=13% Similarity=0.061 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH
Q 013299 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (446)
Q Consensus 197 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~ 276 (446)
.+...+..+...|++++|+..+++++ ...|.++..... ...+..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l--~~~~~~~~~~~~----------------------------------~~~~~~ 120 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQF----------------------------------LQWQYY 120 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH--TTCCCCHHHHHH----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHh--ccccCChHHHHH----------------------------------HHHHHH
Confidence 34445778888999999999999999 667766542110 001122
Q ss_pred hhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 013299 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKL---- 346 (446)
Q Consensus 277 lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l---- 346 (446)
+|.++... +++++|+..|++++ .+.+.. ..+++++|.+|..+|++++|+.+|++++..
T Consensus 121 l~~~~~~~-----------~~~~~Ai~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 121 VAAYVLKK-----------VDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHTTS-----------SCHHHHHHHHHHHH-HTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcc-----------cCHHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 33333221 24566666677666 654332 347899999999999999999999999953
Q ss_pred ---cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q 013299 347 ---EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQ-LKGAVETYTHLLAAL 418 (446)
Q Consensus 347 ---~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~-~~eA~~~~~~~l~l~ 418 (446)
.|.. ..++.++|.++..+|+|++|+.++++++++.++. .-..+++++|.++..+|+ +++|++.|++++.+.
T Consensus 189 ~~~~~~~-~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 189 HDNEEFD-VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccchhHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2222 3588999999999999999999999999876521 127899999999999995 799999999999998
Q ss_pred hhh
Q 013299 419 QVQ 421 (446)
Q Consensus 419 ~~~ 421 (446)
+..
T Consensus 268 ~~~ 270 (293)
T 3u3w_A 268 DIL 270 (293)
T ss_dssp HHT
T ss_pred HHh
Confidence 743
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.59 E-value=1.2e-15 Score=136.27 Aligned_cols=181 Identities=10% Similarity=-0.069 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
.+....+.+......|+++++.+.++......+..+..+..+|.+++..|++++|+..|++++ .+.|+++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~--- 77 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEAL--DFFIHTEEWDDQ--- 77 (198)
T ss_dssp -------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTTTCTTCCCH---
T ss_pred CcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhcccccchh---
Confidence 344556677777788888888888887777777788899999999999999999999999999 888887631100
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013299 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a 319 (446)
......+.+ ...++..+|.++... +++++|+..+++++ +++|+++.+
T Consensus 78 -----------~~~~~~~~~----------~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~ 124 (198)
T 2fbn_A 78 -----------ILLDKKKNI----------EISCNLNLATCYNKN-----------KDYPKAIDHASKVL-KIDKNNVKA 124 (198)
T ss_dssp -----------HHHHHHHHH----------HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHH
T ss_pred -----------hHHHHHHHH----------HHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCcccHHH
Confidence 001111111 246788899998664 57899999999999 999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE-TILNAAL 379 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~-~~~~~al 379 (446)
++++|.++..+|++++|+..|++++.++|++ ..++..++.++..+++++++. ..+.+.+
T Consensus 125 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 125 LYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 599999999999999888876 3344433
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.59 E-value=3.4e-14 Score=116.15 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=111.2
Q ss_pred hhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
...+++.+|.++... +++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++.++|+
T Consensus 11 ~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 11 EAERLKTEGNEQMKV-----------ENFEAAVHFYGKAI-ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 356778888887654 57899999999999 999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013299 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (446)
Q Consensus 350 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 404 (446)
+ ..+|..+|.++..+|++++|+.+++++++.+| ++..++..+|.++...|++
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 Y-SKAYGRMGLALSSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTTC
T ss_pred C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhcC
Confidence 9 59999999999999999999999999999999 8999999999999998875
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.59 E-value=9.1e-15 Score=120.23 Aligned_cols=101 Identities=17% Similarity=0.024 Sum_probs=88.9
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 352 (446)
.++.+|.++... |++++|+..|++++ +++|+++.+|+.+|.++..+|++++|+..|+++++++|++ .
T Consensus 19 ~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKL-----------ANLAEAALAFEAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-I 85 (121)
T ss_dssp CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred hHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Confidence 456777777554 57899999999999 9999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 353 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
.+|..+|.++..+|++++|+.+++++++.+| ++.
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~ 119 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQP--QYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCC
Confidence 9999999999999999999999999999999 554
No 148
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.57 E-value=8.8e-15 Score=124.93 Aligned_cols=104 Identities=15% Similarity=0.025 Sum_probs=94.0
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-------DLS-----ILYRLSLEYAEQRKLNAAHY 338 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~-------~~~-----a~~~lg~~~~~~~~~~~A~~ 338 (446)
+..+...|..+... |++++|+..|++|+ +++|+ +.. +|+++|.++..+|++++|+.
T Consensus 11 a~~~~~~G~~l~~~-----------g~~eeAi~~Y~kAL-~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~ 78 (159)
T 2hr2_A 11 AYLALSDAQRQLVA-----------GEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH 78 (159)
T ss_dssp HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677788887654 67999999999999 99999 544 99999999999999999999
Q ss_pred HHHHHHhh-------cCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 339 YAKMLLKL-------EGGSNLKGW----LLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 339 ~~~~al~l-------~P~~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
.|++|+++ +|++ ..+| +++|.++..+|++++|+..|+++++++| ++..
T Consensus 79 ~~~kAL~l~n~~~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p--~d~~ 137 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE--ERKG 137 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HCCS
T ss_pred HHHHHHHhhhccccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHH
Confidence 99999999 9999 5999 9999999999999999999999999999 5543
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.57 E-value=1.7e-14 Score=126.07 Aligned_cols=126 Identities=15% Similarity=0.112 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013299 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (446)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~l 323 (446)
..|++++|+..++++++..|.+ ..+++.+|.++... |++++|+..|++++ +++|+++.+++.+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~l 84 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN-----SEQWALLGEYYLWQ-----------NDYSNSLLAYRQAL-QLRGENAELYAAL 84 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHCSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCCHHHHHHH
Confidence 3567788888888888854433 56788888888654 56899999999999 9999999999999
Q ss_pred HHH-HHHcCCH--HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 324 SLE-YAEQRKL--NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 324 g~~-~~~~~~~--~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
|.+ +...|++ ++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 150 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNS--PRIN 150 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTSC
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCcc
Confidence 999 7789998 99999999999999999 59999999999999999999999999999999 5544
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.57 E-value=9.5e-14 Score=131.92 Aligned_cols=177 Identities=7% Similarity=-0.049 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH------HHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh
Q 013299 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (446)
Q Consensus 158 p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~ 231 (446)
|.....+...+..+...|++++|++.|+++++..|... ..++.+|.++...|++++|+..|++++ ...++..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~ 149 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--NQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH--TTCCCSS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHhcCC
Confidence 44556677888999999999999999999999887765 346778889999999999999999999 6655431
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
... ....+++.+|.+|..+ |++++|+.+|++++ +
T Consensus 150 ~~~----------------------------------~~~~~~~~lg~~y~~~-----------~~~~~A~~~~~kal-~ 183 (293)
T 2qfc_A 150 DVY----------------------------------QNLYIENAIANIYAEN-----------GYLKKGIDLFEQIL-K 183 (293)
T ss_dssp CTT----------------------------------HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-H
T ss_pred chH----------------------------------HHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-H
Confidence 100 0123455566666443 34666666666666 4
Q ss_pred h---CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHccCHHHH-HHHHHHH
Q 013299 312 T---NMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDA-ETILNAA 378 (446)
Q Consensus 312 ~---~P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~~~~~g~~~eA-~~~~~~a 378 (446)
+ .|++. .+++++|.+|..+|++++|+.++++++.+.++. -..++.++|.++..+|++++| ..++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3 34433 688999999999999999999999999887541 037899999999999999999 7889999
Q ss_pred Hhhc
Q 013299 379 LDQT 382 (446)
Q Consensus 379 l~~~ 382 (446)
+.+.
T Consensus 264 l~~~ 267 (293)
T 2qfc_A 264 SFFF 267 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.57 E-value=2e-16 Score=160.58 Aligned_cols=165 Identities=12% Similarity=0.039 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013299 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (446)
Q Consensus 175 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (446)
+++++|++.|++++..+|+.+.+|+++|.+++..|+|++|+..|++++ .++|++... . .++..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~------------~-~~~~~-- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIV--SWLEMEYGL------------S-EKESK-- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHTTCCSC------------C-HHHHH--
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHhcccccC------------C-hHHHH--
Confidence 455667777777777777777777777877777777888888887777 677766431 0 00000
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 013299 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLN 334 (446)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~ 334 (446)
.+. .....+++++|.||... +++++|+.+|++++ +++|+++.+++++|.+|..+|+++
T Consensus 311 ---~~~-------~~~~~~~~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~~g~a~~~~g~~~ 368 (457)
T 1kt0_A 311 ---ASE-------SFLLAAFLNLAMCYLKL-----------REYTKAVECCDKAL-GLDSANEKGLYRRGEAQLLMNEFE 368 (457)
T ss_dssp ---HHH-------HHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ---HHH-------HHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHccCHH
Confidence 000 12356788888888654 56889999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHH
Q 013299 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-LNAAL 379 (446)
Q Consensus 335 ~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~-~~~al 379 (446)
+|+..|++|++++|++. .++..++.++..+|++++|... +.+.+
T Consensus 369 ~A~~~~~~al~l~P~~~-~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 369 SAKGDFEKVLEVNPQNK-AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999884 8888999999988888887743 44443
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.57 E-value=9.6e-14 Score=118.94 Aligned_cols=133 Identities=15% Similarity=0.059 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
+..|+.+|.++...|++++|+..|++++ ..+|+++.++..+|
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~a------------------------------------ 54 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAI--ELNPSNAIYYGNRS------------------------------------ 54 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCChHHHHHHH------------------------------------
Confidence 4567777777777777777777777777 66776655444333
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.++.. .|++++|+..|++++ +++|+++.+++.+|.++..+|++++|+..|++++.++|++ ..+
T Consensus 55 ----~~~~~-----------~~~~~~A~~~~~~a~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~ 117 (166)
T 1a17_A 55 ----LAYLR-----------TECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDA 117 (166)
T ss_dssp ----HHHHH-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHH
T ss_pred ----HHHHH-----------cCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHH
Confidence 33322 235678888888888 8888888999999999999999999999999999999988 477
Q ss_pred HHHHHHH--HHHccCHHHHHHHHHHHHhhc
Q 013299 355 WLLMARI--LSAQKRYEDAETILNAALDQT 382 (446)
Q Consensus 355 ~~~la~~--~~~~g~~~eA~~~~~~al~~~ 382 (446)
+..++.+ +..+|++++|+..++++....
T Consensus 118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 118 KMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 7554444 778889999998888876553
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.55 E-value=2.4e-14 Score=123.41 Aligned_cols=117 Identities=20% Similarity=0.140 Sum_probs=102.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST------------------NMRDLSILYRLSLEYAEQRK 332 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~------------------~P~~~~a~~~lg~~~~~~~~ 332 (446)
+..+...|..+... |++++|+..|++++ .+ +|.++.+++++|.++..+|+
T Consensus 11 a~~~~~~G~~~~~~-----------~~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 11 VEALRQKGNELFVQ-----------KDYKEAIDAYRDAL-TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55677788888664 57899999999999 99 77888999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHHHhC
Q 013299 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG-ELLRTKAKVQLVQG 402 (446)
Q Consensus 333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~-~~~~~~a~~~~~~g 402 (446)
+++|+..+++++.++|++ ..+|+.+|.++..+|++++|+..|+++++++| ++. .+...++.+....+
T Consensus 79 ~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 79 LHEAEETSSEVLKREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHP--AAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 59999999999999999999999999999999 777 55666666554443
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.55 E-value=5.1e-14 Score=117.11 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=103.6
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+..++.+|.++... |++++|+..|++++ .++|+++.+++++|.++..+|++++|+..|++++.++|++
T Consensus 9 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVG-----------RKYPEAAACYGRAI-TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-----------CcHHHHHHHHHHHH-hhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 67888999988664 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHh
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE-----QGELLRTKAKVQLVQ 401 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-----~~~~~~~~a~~~~~~ 401 (446)
..+|..+|.++..+|++++|+.+++++++..| + +..+...+..+....
T Consensus 77 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 77 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCCCTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh--hHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999998 5 556665555554443
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=1.1e-14 Score=115.80 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=101.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC--cHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE--QGE 389 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~ 389 (446)
++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++..| + +..
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~ 77 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE-SKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKD 77 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHH
Confidence 479999999999999999999999999999999999999 59999999999999999999999999999999 8 899
Q ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhh
Q 013299 390 LLRTKAKVQLVQ-GQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 390 ~~~~~a~~~~~~-g~~~eA~~~~~~~l~l~~~ 420 (446)
+++.+|.++... |++++|++.+++++...|.
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 999999999999 9999999999999988764
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.54 E-value=2.7e-13 Score=109.67 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=106.1
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..+++.+|.++... +++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++.++|++
T Consensus 9 ~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 56778888887554 56899999999999 9999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 402 (446)
..+|..+|.++...|++++|+.+++++++.+| ++..++..++.++...|
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcc
Confidence 59999999999999999999999999999999 88999999999887765
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.54 E-value=8.2e-14 Score=114.55 Aligned_cols=108 Identities=11% Similarity=-0.069 Sum_probs=102.7
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
...|.++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~ 86 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKG 86 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHH
Confidence 3568889999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++.+|.++...|++++|+..|++++++.|.+
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999997654
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.54 E-value=7.3e-14 Score=120.39 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKL------------------EGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------------------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
.+..+..+|..+...|++++|+..|++++.+ +|.+ ..+|.++|.++..+|+|++|+..+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN-IPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3567889999999999999999999999999 7887 58999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+++++| +++.+++.+|.++..+|++++|+..|++++++.|++.
T Consensus 89 al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 89 VLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999 8999999999999999999999999999999998765
No 159
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.54 E-value=5e-15 Score=120.66 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 295 ATRQAKALQALVSAARST---NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~---~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.|++++|+..|++++ ++ +|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.++|.++..+|++++|
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 467899999999999 99 69999999999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTK 394 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~ 394 (446)
+.+++++++..| +++.+....
T Consensus 81 ~~~~~~al~~~p--~~~~~~~~~ 101 (117)
T 3k9i_A 81 VELLLKIIAETS--DDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHHC--CCHHHHHTH
T ss_pred HHHHHHHHHhCC--CcHHHHHHH
Confidence 999999999999 777765443
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=2.5e-13 Score=108.83 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=101.9
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+..++.+|.++... |++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++.++|++
T Consensus 4 ~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSV-----------GNIDDALQCYSEAI-KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 45677788877554 57899999999999 9999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
..++..+|.++..+|++++|+.+++++++.+| ++..++..++.+.
T Consensus 72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA--NNPQLKEGLQNME 116 (118)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHhh
Confidence 59999999999999999999999999999999 8888888887764
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.53 E-value=7.9e-15 Score=148.76 Aligned_cols=152 Identities=12% Similarity=0.024 Sum_probs=122.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC--------
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD-------- 316 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~-------- 316 (446)
.+++++|+..++++++..+ ..+.++..+|.++... +++++|+..|++|+ +++|++
T Consensus 247 l~~~~~A~~~~~~~~~~~~-----~~a~~~~~~G~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~ 309 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL-----EQAAIVKEKGTVYFKG-----------GKYMQAVIQYGKIV-SWLEMEYGLSEKES 309 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH-----HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHTTCCSCCHHHH
T ss_pred hhhcccCcchhhcCHHHHH-----HHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HHhcccccCChHHH
Confidence 3445566666665555322 1356777788877654 56788888888888 888888
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 317 -------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 317 -------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
..+++++|.++..+|++++|+.+|++++.++|++ ..+|+++|.++..+|+|++|+..|+++++++| ++..
T Consensus 310 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~~~ 386 (457)
T 1kt0_A 310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHH
Confidence 7999999999999999999999999999999999 59999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhCCHHHHHH-HHHHHHH
Q 013299 390 LLRTKAKVQLVQGQLKGAVE-TYTHLLA 416 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~-~~~~~l~ 416 (446)
++..++.++..+|++++|.. .|++.+.
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875 3454443
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=3.4e-15 Score=152.26 Aligned_cols=138 Identities=12% Similarity=0.006 Sum_probs=119.7
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.++..+|.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|++|++++|++
T Consensus 6 a~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 6 AEELKTQANDYFKA-----------KDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HTTSSSSSSSTTTT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34566677777654 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHHH
Q 013299 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV--QLVQGQLKGAVETYT-----------HLLAA 417 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~--~~~~g~~~eA~~~~~-----------~~l~l 417 (446)
..+|.++|.++..+|++++|+..++++++.+| ++..++..++.+ +..+|++++|++.++ +++++
T Consensus 74 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~ 150 (477)
T 1wao_1 74 -IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTI 150 (477)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCC
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccc
Confidence 59999999999999999999999999999999 888889989888 899999999999999 77776
Q ss_pred Hhhhhh
Q 013299 418 LQVQTK 423 (446)
Q Consensus 418 ~~~~~~ 423 (446)
.|....
T Consensus 151 ~~~~~~ 156 (477)
T 1wao_1 151 EDEYSG 156 (477)
T ss_dssp CTTCCS
T ss_pred cccccc
Confidence 665433
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=1.9e-13 Score=109.59 Aligned_cols=114 Identities=12% Similarity=0.000 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
.+.+++.+|.++...|++++|+..|++++..+|++ ..+|..+|.++..+|++++|+.+++++++..| +++.+++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHH
Confidence 46789999999999999999999999999999999 59999999999999999999999999999999 8999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhhhccc
Q 013299 396 KVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMRKRVS 442 (446)
Q Consensus 396 ~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (446)
.++...|++++|+..|++++++.| ....+++..+++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEA----------NNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT----------TCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCC----------CCHHHHHHHHHhh
Confidence 999999999999999999999864 4445555555543
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.51 E-value=4.3e-13 Score=108.50 Aligned_cols=107 Identities=20% Similarity=0.264 Sum_probs=97.8
Q ss_pred hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013299 311 STNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (446)
Q Consensus 311 ~~~P~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 389 (446)
..+|.+ +.+++.+|.++...|++++|+..|++++..+|++ ..+|..+|.++...|++++|+.+++++++..| ++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~ 78 (125)
T 1na0_A 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAE 78 (125)
T ss_dssp -----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHH
Confidence 467777 8899999999999999999999999999999998 59999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+++.+|.++...|++++|+..|++++++.|.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999998743
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.51 E-value=4.1e-13 Score=127.47 Aligned_cols=169 Identities=10% Similarity=0.002 Sum_probs=118.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH------HHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCCh------HH
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKE------RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PA 233 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~------~a 233 (446)
.....+...|++++|+..|++++...+..++ .++.+|.++...|++++|+..|++++ .+.++.. .+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al--~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--NQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH--HTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH--HHhcccccHHHHHHH
Confidence 3467788999999999999999998887776 33458999999999999999999999 5544322 24
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC
Q 013299 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (446)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~ 313 (446)
+..+|.+ +...|++++|+.+|+++++..... - ...
T Consensus 158 ~~~lg~~-y~~~g~~~~A~~~~~~al~~~~~~-------------------------------------------~-~~~ 192 (293)
T 3u3w_A 158 ENAIANI-YAENGYLKKGIDLFEQILKQLEAL-------------------------------------------H-DNE 192 (293)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHS-------------------------------------------S-CCH
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhc-------------------------------------------c-cch
Confidence 5666655 455789999999999998742110 0 111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHccC-HHHHHHHHHHHHhh
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKR-YEDAETILNAALDQ 381 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~~~~~g~-~~eA~~~~~~al~~ 381 (446)
|..+.+++++|.+|..+|++++|+.++++++.+.++.. +.++.++|.++..+|+ +++|+.+|++|+.+
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 22245666777777777777777777777776654320 2567777777777773 57777777777654
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.51 E-value=1.6e-13 Score=111.98 Aligned_cols=108 Identities=13% Similarity=-0.011 Sum_probs=102.1
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
+.+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++..| ++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~ 82 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKA 82 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHH
Confidence 4567888999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
++.+|.++...|++++|+..|++++++.|++
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999997644
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.50 E-value=2.5e-13 Score=111.61 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=91.8
Q ss_pred HHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
+++.+|.++... |++++|+..|++++ +.+|+++ .+++.+|.++..+|++++|+..|++++..+|+
T Consensus 4 ~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKN-----------GKYDDASQLFLSFL-ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 455666666543 56888999999999 8888888 78888999998899999999999999988888
Q ss_pred C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013299 350 S---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (446)
Q Consensus 350 ~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 403 (446)
+ + .+++.+|.++..+|++++|+.++++++..+| ++..+...+..+....++
T Consensus 72 ~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 72 HDKAA-GGLLKLGLSQYGEGKNTEAQQTLQQVATQYP--GSDAARVAQERLQSIRLG 125 (129)
T ss_dssp STTHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TSHHHHHHHHHHHHHC--
T ss_pred CcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHhh
Confidence 7 5 7788889999999999999999999988888 777766665555544443
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.3e-13 Score=113.18 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=100.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013299 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ 387 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 387 (446)
..+|+++..++.+|..+...|++++|+..|++++.++|++ . .+|..+|.++..+|++++|+.+++++++.+| ++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~ 98 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA-VLHRNRAACHLKLEDYDKAETEASKAIEKDG--GD 98 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CC
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cC
Confidence 5678999999999999999999999999999999999986 4 8899999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 388 ~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
..+++.+|.++..+|++++|+..|++++++.|++
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999997543
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.49 E-value=2.6e-13 Score=111.51 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELL 391 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~ 391 (446)
+.+++.+|.++...|++++|+..|++++..+|+++. .+++.+|.++..+|++++|+.+++++++.+| ++ +.++
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~ 79 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP--THDKAAGGL 79 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TSTTHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--CCcccHHHH
Confidence 346889999999999999999999999999999831 6999999999999999999999999999999 77 8999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
+.+|.++..+|++++|+..|+++++..|+...
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 99999999999999999999999999875543
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.49 E-value=1.6e-14 Score=140.62 Aligned_cols=154 Identities=9% Similarity=0.032 Sum_probs=90.9
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013299 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (446)
Q Consensus 192 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (446)
+.....|+.+|.+++..|+|++|+..|++++ .++|++.. +...++.+++...+ ..
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al--~~~p~~~~---------~~~~~~~~~~~~~l--------------~~ 230 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAI--AYMGDDFM---------FQLYGKYQDMALAV--------------KN 230 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHH--HHSCHHHH---------HTCCHHHHHHHHHH--------------HT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHhccchh---------hhhcccHHHHHHHH--------------HH
Confidence 4456778999999999999999999999999 78887642 22334444443322 12
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 351 (446)
.+++++|.+|... +++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|+++
T Consensus 231 ~~~~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 231 PCHLNIAACLIKL-----------KRYDEAIGHCNIVL-TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHHHHHHHHHTT-----------TCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 4778888888664 46788888888888 88888888888888888888888888888888888888884
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHhhcC
Q 013299 352 LKGWLLMARIL-SAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 352 ~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p 383 (446)
.++..++.+. ...+..+++...|.+++...|
T Consensus 299 -~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 299 -AIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ---------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 8888888874 445667788888888888888
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.48 E-value=2.3e-13 Score=120.75 Aligned_cols=161 Identities=11% Similarity=-0.009 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh------hCCCCHH
Q 013299 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS------TNMRDLS 318 (446)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~------~~P~~~~ 318 (446)
.|++++|...++.+.. .+. ....++..+|.++... |++++|+..|++++ + ..|..+.
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~ 67 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPA----TASGARFMLGYVYAFM-----------DRFDEARASFQALQ-QQAQKSGDHTAEHR 67 (203)
T ss_dssp --CHHHHHHHHHHHHT-STT----THHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHTTCCHHHHHH
T ss_pred cccHHHHHHHHHHhcC-ChH----HHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHH-HHHHHcCCcHHHHH
Confidence 3556666654333322 111 1245666666666543 45677777777777 6 4455677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---cCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc----H
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKL---EGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----G 388 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l---~P~~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~----~ 388 (446)
+++++|.++..+|++++|+.++++++.+ .|++ ...++.++|.++..+|++++|+.++++++...+..++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 8899999999999999999999999998 3422 1357889999999999999999999999976431122 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
.++.++|.++...|++++|+..+++++++.+...
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 4468899999999999999999999999986543
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.48 E-value=7.6e-13 Score=125.56 Aligned_cols=191 Identities=15% Similarity=-0.003 Sum_probs=147.4
Q ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013299 180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP--KCLPALLIASKICGEYPDLAEEGATFASR 257 (446)
Q Consensus 180 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P--~~~~a~~~~~~~~~~~~~~~~eA~~~~~~ 257 (446)
|+..+++.+...+....+++.+|.++...|++++|+..+.++| ..+| ++.+++...+.+++. .|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i--~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI--DNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 6788888888876777778899999999999999999999999 7776 788888777777655 6899999999998
Q ss_pred HHHHcCCCcchhhhHHHHHhhch--hHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCH
Q 013299 258 ALECLGDGCDQMESTANCLLGIS--LSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKL 333 (446)
Q Consensus 258 al~~~~~~~~~~~~~a~~~lg~~--~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~~~~ 333 (446)
+.+. +|+...........+..+ ....| .+++.+|+..|+++. ...|+ .+..+++ ++..+|++
T Consensus 162 ~~~~-~~d~~~~~d~~l~~Laea~v~l~~g---------~~~~q~A~~~f~El~-~~~p~~~~~~lLln---~~~~~g~~ 227 (310)
T 3mv2_B 162 YTNA-IEDTVSGDNEMILNLAESYIKFATN---------KETATSNFYYYEELS-QTFPTWKTQLGLLN---LHLQQRNI 227 (310)
T ss_dssp HHHH-SCHHHHHHHHHHHHHHHHHHHHHHT---------CSTTTHHHHHHHHHH-TTSCSHHHHHHHHH---HHHHHTCH
T ss_pred HHhc-CccccccchHHHHHHHHHHHHHHhC---------CccHHHHHHHHHHHH-HhCCCcccHHHHHH---HHHHcCCH
Confidence 8774 441000001233333333 22211 126889999999999 88887 4556666 88999999
Q ss_pred HHHHHHHHHHHhh----------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 334 NAAHYYAKMLLKL----------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 334 ~~A~~~~~~al~l----------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
++|...+++++++ +|+++ .++.++..+...+|+ +|..+++++.+..| +++.+.-
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~-~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P--~hp~i~d 291 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKP-TFLANQITLALMQGL--DTEDLTNQLVKLDH--EHAFIKH 291 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHH-HHHHHHHHHHHHTTC--TTHHHHHHHHHTTC--CCHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCH-HHHHHHHHHHHHhCh--HHHHHHHHHHHhCC--CChHHHH
Confidence 9999999998887 58884 999899888888998 89999999999999 7776543
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.48 E-value=3.2e-14 Score=138.45 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=89.9
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-----------------SILYRLSLEYAEQRKL 333 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~-----------------~a~~~lg~~~~~~~~~ 333 (446)
+..+..+|.++... +++++|+..|++++ .++|++. .+++++|.++..+|++
T Consensus 179 a~~~~~~g~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~ 246 (338)
T 2if4_A 179 ADRRKMDGNSLFKE-----------EKLEEAMQQYEMAI-AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY 246 (338)
T ss_dssp HHHHHHHHHHTCSS-----------SCCHHHHHHHHHHH-HHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 45677888887664 56899999999999 9999988 4999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhCCHHHHHHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQGQLKGAVETYT 412 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~-~~~~g~~~eA~~~~~ 412 (446)
++|+.+|++++.++|++ ..+|+++|.++..+|++++|+.+|+++++++| ++..++..++.+ ....+..+++...|+
T Consensus 247 ~~A~~~~~~al~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 247 DEAIGHCNIVLTEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAP--DDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 59999999999999999999999999999999 899999999988 556678889999999
Q ss_pred HHHHHHhhhh
Q 013299 413 HLLAALQVQT 422 (446)
Q Consensus 413 ~~l~l~~~~~ 422 (446)
+++...|++.
T Consensus 324 ~~l~~~p~~~ 333 (338)
T 2if4_A 324 GIFKGKDEGG 333 (338)
T ss_dssp ----------
T ss_pred HhhCCCCCCC
Confidence 9999988654
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=3.4e-15 Score=152.24 Aligned_cols=128 Identities=13% Similarity=0.068 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH--HHHccCHHHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI--LSAQKRYEDAET 373 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~--~~~~g~~~eA~~ 373 (446)
+++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|+++ .++..++.+ +..+|++++|+.
T Consensus 54 g~~~~A~~~~~~al-~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 54 ECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp TCHHHHHHHHHHHH-HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-THHHHHHHHHHHHHHHHHCCC--
T ss_pred cCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777888888 78888888888888888888888888888888888888774 777777777 777788888888
Q ss_pred HHH-----------HHHhhcCCCC---------cHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhhhhhhc
Q 013299 374 ILN-----------AALDQTGKWE---------QGELLRTKAKVQLVQGQ--LKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 374 ~~~-----------~al~~~p~~~---------~~~~~~~~a~~~~~~g~--~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
.++ +++...|++. .......+...+...+. .++....+.++.++....+...
T Consensus 132 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~ 205 (477)
T 1wao_1 132 GDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLV 205 (477)
T ss_dssp ----CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEE
T ss_pred cccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeE
Confidence 887 7776666310 01111122222333333 3455567788888776655443
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=7.3e-13 Score=111.04 Aligned_cols=115 Identities=13% Similarity=0.034 Sum_probs=105.0
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 347 (446)
...++.+|.++... +++++|+..|++++ +++|++ +.+++++|.++...|++++|+..+++++.++
T Consensus 28 ~~~~~~~a~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 28 VEQLRKEGNELFKC-----------GDYGGALAAYTQAL-GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp HHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 56788888887654 57899999999999 999998 8999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013299 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (446)
Q Consensus 348 P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 400 (446)
|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..++..++.+...
T Consensus 96 ~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 96 GGD-VKALYRRSQALEKLGRLDQAVLDLQRCVSLEP--KNKVFQEALRNISGP 145 (148)
T ss_dssp SCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHCS
T ss_pred ccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHhh
Confidence 999 59999999999999999999999999999999 888888887776543
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1e-12 Score=131.13 Aligned_cols=207 Identities=9% Similarity=-0.008 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHH-----------------HHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE-----------------RYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
|......|..+...|++++|++.|.++++.+|...+ ++.+||.+|...|++++|+..|++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~- 82 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST- 82 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH-
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 344556677788889999999999999998887653 57889999999999999999999988
Q ss_pred CCCCCCChHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHH
Q 013299 224 GSEDPKCLPAL-----LIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATR 297 (446)
Q Consensus 224 ~~~~P~~~~a~-----~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 297 (446)
...+....+. ....+.++...|.+++|+.++++++..... ........++..+|.+|... |+
T Consensus 83 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~ 150 (434)
T 4b4t_Q 83 -EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK-----------KQ 150 (434)
T ss_dssp -HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH-----------TC
T ss_pred -HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc-----------cC
Confidence 5555433221 122234455567777777777777764321 11122344555566555443 34
Q ss_pred HHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--C----HHHHHHHHHHHHHc
Q 013299 298 QAKALQALVSAARST------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--N----LKGWLLMARILSAQ 365 (446)
Q Consensus 298 ~~eAl~~~~~al~~~------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~--~----~~~~~~la~~~~~~ 365 (446)
+++|+..+++++ .. .|....++..+|.++...|++++|...+++++.+.|.. + ...+..+|.++...
T Consensus 151 ~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (434)
T 4b4t_Q 151 YKDSLALINDLL-REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCED 229 (434)
T ss_dssp HHHHHHHHHHHH-HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHH-HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 566666666655 43 23334555666666666666666666666665554321 0 13344555555566
Q ss_pred cCHHHHHHHHHHHHhh
Q 013299 366 KRYEDAETILNAALDQ 381 (446)
Q Consensus 366 g~~~eA~~~~~~al~~ 381 (446)
|+|++|..+|.++++.
T Consensus 230 ~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 230 KDYKTAFSYFFESFES 245 (434)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 6666666666666544
No 177
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=9.5e-13 Score=116.72 Aligned_cols=163 Identities=14% Similarity=0.018 Sum_probs=113.7
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013299 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (446)
Q Consensus 172 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA 251 (446)
...|++++|.+.++......+..+.+++.+|.++...|++++|+..|++++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------------- 53 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ----------------------------- 53 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-----------------------------
Confidence 445666777664443333323556666667777777777777777766666
Q ss_pred HHHHHHHHHHcCC-CcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh---CCCC----HHHHHHH
Q 013299 252 ATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---NMRD----LSILYRL 323 (446)
Q Consensus 252 ~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~---~P~~----~~a~~~l 323 (446)
+.... ........++..+|.++... |++++|+..+++++ ++ .|++ ..+++++
T Consensus 54 --------~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 54 --------QQAQKSGDHTAEHRALHQVGMVERMA-----------GNWDAARRCFLEER-ELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp --------HHHHTTCCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHH
T ss_pred --------HHHHHcCCcHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHcCccHHHHHHHHHHH
Confidence 21111 01112356777888887654 56889999999998 87 4433 4678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCC--CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 324 SLEYAEQRKLNAAHYYAKMLLKLEGG--SN---LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 324 g~~~~~~~~~~~A~~~~~~al~l~P~--~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
|.++..+|++++|+.++++++.+.+. ++ ..++.++|.++..+|++++|+.++++++++..
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543 21 13468999999999999999999999998754
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=8.4e-13 Score=107.83 Aligned_cols=115 Identities=13% Similarity=0.180 Sum_probs=91.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.+++.+|.++... |++++|+..|++++ ..+|+++.+++++|.++...|++++|+..+++++.+.|++
T Consensus 4 ~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 4 ALKEKELGNDAYKK-----------KDFDTALKHYDKAK-ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 45677777777553 56788888888888 8888888888888888888888888888888888888765
Q ss_pred -------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013299 351 -------NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401 (446)
Q Consensus 351 -------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 401 (446)
+ .++..+|.++..+|++++|+.+++++++..| +...+..++.+....
T Consensus 72 ~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 72 REDYRQIA-KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR---TPDVLKKCQQAEKIL 125 (131)
T ss_dssp TTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHH
T ss_pred chhHHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 4 7888888888888888888888888888877 356666666665443
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.44 E-value=6.5e-13 Score=130.84 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=114.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHH
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS----------------TNMRDLSILYRLSLEYAEQRKLN 334 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~----------------~~P~~~~a~~~lg~~~~~~~~~~ 334 (446)
+..+..+|..+... +++++|+..|++++ + ++|.++.+++++|.++..+|+++
T Consensus 223 a~~~~~~g~~~~~~-----------g~~~~Ai~~y~kAl-~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 290 (370)
T 1ihg_A 223 SEDLKNIGNTFFKS-----------QNWEMAIKKYTKVL-RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ 290 (370)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 45677788877654 57899999999999 8 88999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013299 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (446)
Q Consensus 335 ~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~ 410 (446)
+|+.+|+++++++|++ ..+|+.+|.++..+|++++|+..|++|++++| ++..++..++.++..+++.+++...
T Consensus 291 ~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 291 GAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCchh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 59999999999999999999999999999999 8999999999999999988887654
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=8e-13 Score=107.96 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc------
Q 013299 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------ 387 (446)
Q Consensus 314 P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------ 387 (446)
|+.+.+++.+|.++...|++++|+..|++++.++|++ ..++..+|.++..+|++++|+.++++++...| ++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~ 77 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--ENREDYRQ 77 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HSTTCHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--ccchhHHH
Confidence 4457889999999999999999999999999999999 59999999999999999999999999999988 55
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 388 -GELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 388 -~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+++.+|.++...|++++|++.|++++++.|
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999865
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.43 E-value=2.7e-13 Score=115.51 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=85.2
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013299 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY----------EDAETILNAALDQTGKWEQGELLRTKAKV 397 (446)
Q Consensus 328 ~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~~~~a~~ 397 (446)
.+.+++++|+..++++++++|++ +++|.++|.++..++++ ++|+..|++||+++| ++..+|+++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~-aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD-ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHH
Confidence 45678999999999999999999 59999999999999886 599999999999999 899999999999
Q ss_pred HHHhC-----------CHHHHHHHHHHHHHHHhhhh
Q 013299 398 QLVQG-----------QLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 398 ~~~~g-----------~~~eA~~~~~~~l~l~~~~~ 422 (446)
+..+| ++++|+++|++++++.|++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99885 89999999999999998753
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.42 E-value=1.1e-12 Score=110.97 Aligned_cols=140 Identities=14% Similarity=0.010 Sum_probs=117.9
Q ss_pred hhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013299 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKM 342 (446)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~------~a~~~lg~~~~~~~~~~~A~~~~~~ 342 (446)
....++..+|.++... +++++|+..+++++ ++.|+.. .+++++|.++..+|++++|+.++++
T Consensus 7 ~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3466788889888664 56899999999999 8866433 4889999999999999999999999
Q ss_pred HHhhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 343 LLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 343 al~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
++.+.+... ..++.++|.++..+|++++|+.+++++++..+.. ....++..+|.++...|++++|++.+++
T Consensus 75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999876531 3578899999999999999999999999774310 2356788999999999999999999999
Q ss_pred HHHHHhh
Q 013299 414 LLAALQV 420 (446)
Q Consensus 414 ~l~l~~~ 420 (446)
++++.+.
T Consensus 155 a~~~~~~ 161 (164)
T 3ro3_A 155 HLEISRE 161 (164)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9999754
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.42 E-value=2.7e-13 Score=110.27 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=83.6
Q ss_pred HcCCHHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013299 329 EQRKLNAAHYYAKMLLKL---EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l---~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 405 (446)
.+|++++|+..|++++++ +|++ ..+|.++|.++..+|+|++|+.+++++++.+| +++.+++++|.++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL-AECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHH
Confidence 368999999999999999 6988 59999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 013299 406 GAVETYTHLLAALQVQTKT 424 (446)
Q Consensus 406 eA~~~~~~~l~l~~~~~~~ 424 (446)
+|+..|++++++.|+++..
T Consensus 79 ~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCcHHH
Confidence 9999999999999876543
No 184
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.41 E-value=4.8e-12 Score=120.04 Aligned_cols=198 Identities=13% Similarity=-0.029 Sum_probs=152.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 151 KVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII--NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 151 ~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
+..++..+.+..++..+|.++...|++++|++++.+.+..+| ++.+++..++.++..+||.+.|...+++.. +.+|
T Consensus 90 ~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~--~~~~ 167 (310)
T 3mv2_B 90 ENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT--NAIE 167 (310)
T ss_dssp HHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSC
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCc
Confidence 334455466777888999999999999999999999999997 999999999999999999999999999998 7899
Q ss_pred ------CChHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHH
Q 013299 229 ------KCLPALLIASKICG-EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (446)
Q Consensus 229 ------~~~~a~~~~~~~~~-~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (446)
+.+...+..+.+.+ ...+++.+|...|+++.+.. |+. .....+++ ++. .+|++++|
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~--~~~~lLln---~~~-----------~~g~~~eA 230 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTW--KTQLGLLN---LHL-----------QQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSH--HHHHHHHH---HHH-----------HHTCHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCc--ccHHHHHH---HHH-----------HcCCHHHH
Confidence 33333443343322 23458999999999987743 320 01122222 443 35789999
Q ss_pred HHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 302 LQALVSAARST----------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 302 l~~~~~al~~~----------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
...++.++ +. +|+|++++.|+..+...+|+ +|.++++++..++|++| -+ .++.+.
T Consensus 231 e~~L~~l~-~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp-~i-----------~d~~~k 295 (310)
T 3mv2_B 231 QGIVELLL-SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA-FI-----------KHHQEI 295 (310)
T ss_dssp HHHHHHHH-SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH-HH-----------HHHHHH
T ss_pred HHHHHHHH-HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh-HH-----------HHHHHH
Confidence 99999888 77 59999999999988888998 99999999999999996 32 245555
Q ss_pred HHHHHHHHhhc
Q 013299 372 ETILNAALDQT 382 (446)
Q Consensus 372 ~~~~~~al~~~ 382 (446)
...|++++...
T Consensus 296 ~~~Fd~~~~ky 306 (310)
T 3mv2_B 296 DAKFDELVRKY 306 (310)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 66666666543
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.41 E-value=1.1e-12 Score=105.94 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 300 eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+|+..|++++ +.+|+++.+++++|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|++++
T Consensus 3 ~a~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHH-TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5889999999 9999999999999999999999999999999999999999 5999999999999999999999999999
Q ss_pred hhcC
Q 013299 380 DQTG 383 (446)
Q Consensus 380 ~~~p 383 (446)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9988
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.41 E-value=7.9e-13 Score=104.95 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC--ChHHH
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK--CLPAL 234 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~--~~~a~ 234 (446)
+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+ ++.++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI--NVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCcccchHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999999 89999 99998
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Q 013299 235 LIASKICGEYP-DLAEEGATFASRALECLGD 264 (446)
Q Consensus 235 ~~~~~~~~~~~-~~~~eA~~~~~~al~~~~~ 264 (446)
..++.+ +... |++++|+.++++++...|+
T Consensus 80 ~~l~~~-~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADA-LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHH-HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHH-HHHHhCCHHHHHHHHHHHhhcccC
Confidence 887766 4568 8999999999999996554
No 187
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1.6e-11 Score=129.49 Aligned_cols=228 Identities=9% Similarity=-0.011 Sum_probs=185.1
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHH-HHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL-NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS 256 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~-~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~ 256 (446)
......|++++...|.+++.|+..+..+...|+.++|. ..|++|+ ...|++...++..+.+. ...|++++|...|+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi--~~~P~s~~Lwl~~a~~e-e~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ--QCIPNSAVLAFSLSEQY-ELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHhCCHHHHHHHHH
Confidence 45567899999999999999999999999999999997 9999999 88999988777666654 44688999999999
Q ss_pred HHHHHcC----------CCcc-------hhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhh-CCCCHH
Q 013299 257 RALECLG----------DGCD-------QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-NMRDLS 318 (446)
Q Consensus 257 ~al~~~~----------~~~~-------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~-~P~~~~ 318 (446)
+++...+ |..+ .....+|....... .+.+..+.|...|.+|+ +. .+..+.
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e-----------rR~~~l~~AR~vf~~A~-~~~~~~~~~ 470 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM-----------KRIQGLAASRKIFGKCR-RLKKLVTPD 470 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH-----------HHHHCHHHHHHHHHHHH-HTGGGSCTH
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HhcCCCChH
Confidence 9998531 1100 00122344443322 24567899999999999 77 555678
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAK 396 (446)
Q Consensus 319 a~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~~~~a~ 396 (446)
++...|.+....+ +++.|...|+++++..|++ ...|...+..+...|+.+.|..+|++|+...|+. ....+|.....
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKYFATD-GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8887777776655 5999999999999999998 4999999999999999999999999999987721 24677778888
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 397 VQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 397 ~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.....|+.+.+...++++++..|+.
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999854
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=8.4e-13 Score=105.23 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc------HH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------GE 389 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~ 389 (446)
++.+++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+..++++++++| ++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS--TAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS--STTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CccHHHHHHH
Confidence 57889999999999999999999999999999999 59999999999999999999999999999999 77 88
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 390 LLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
+++.+|.++...|++++|+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999988887766553
No 189
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=4.7e-11 Score=125.96 Aligned_cols=217 Identities=7% Similarity=-0.127 Sum_probs=177.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCC--
Q 013299 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLA-TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE-- 226 (446)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~-- 226 (446)
++.++...|.++++|...+..+...|+.++|. +.|++|+...|.+...|+.++......|++++|..+|++++ ..
T Consensus 332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l--~~l~ 409 (679)
T 4e6h_A 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI--DRIH 409 (679)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHH
Confidence 46677888999999999999999999999997 99999999999999999999999999999999999999999 43
Q ss_pred ---------CCC-----------ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhh
Q 013299 227 ---------DPK-----------CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (446)
Q Consensus 227 ---------~P~-----------~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (446)
.|. ...+|+..+.+..+ .+..+.|...|.+|++..++.. ...|...+..-...
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-~~~l~~AR~vf~~A~~~~~~~~----~~lyi~~A~lE~~~-- 482 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLKKLVT----PDIYLENAYIEYHI-- 482 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTGGGSC----THHHHHHHHHHHTT--
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHh--
Confidence 253 23356555554433 5678999999999998523221 23444333222111
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHH
Q 013299 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSA 364 (446)
Q Consensus 287 ~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~~~~~~~~la~~~~~ 364 (446)
.++.+.|...|++++ +..|+++..|...+......|+.+.|...|++|+...|+ .....|.........
T Consensus 483 --------~~d~e~Ar~ife~~L-k~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 483 --------SKDTKTACKVLELGL-KYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp --------TSCCHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 123689999999999 999999999998898888999999999999999999884 224788888999999
Q ss_pred ccCHHHHHHHHHHHHhhcCC
Q 013299 365 QKRYEDAETILNAALDQTGK 384 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p~ 384 (446)
.|+.+.+..+.+++++..|+
T Consensus 554 ~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TCCSHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999994
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.31 E-value=8e-12 Score=98.63 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=65.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+|..+|.++..+|++++|+..|++++++.|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5799999999999999999999999999999999999995 9999999999999999999999999999877
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.30 E-value=2.2e-11 Score=93.20 Aligned_cols=88 Identities=19% Similarity=0.285 Sum_probs=80.7
Q ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013299 312 TNM-RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (446)
Q Consensus 312 ~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 390 (446)
++| +++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..+
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~ 79 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEA 79 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCHHH
Confidence 444 468899999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhC
Q 013299 391 LRTKAKVQLVQG 402 (446)
Q Consensus 391 ~~~~a~~~~~~g 402 (446)
+..+|.++..+|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999988765
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.28 E-value=1.7e-11 Score=120.72 Aligned_cols=104 Identities=12% Similarity=0.008 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLK----------------LEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~----------------l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
+..+..+|..+...|++++|+..|++|++ ++|.+ ..+|.++|.++..+|+|++|+.+++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999 78888 59999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 381 QTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 381 ~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
++| ++..+++.+|.++..+|++++|+..|++++++.|++..
T Consensus 302 ~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 302 IDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp TCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hCc--hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 999 89999999999999999999999999999999876443
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.6e-10 Score=115.02 Aligned_cols=227 Identities=13% Similarity=0.011 Sum_probs=157.3
Q ss_pred HHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 12 ~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
+....|..+.+.|+|++|++.|.++++..+.... ...............+.++..+|.+|...|++++|+..|.+++.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSS--AAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSS--BSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccch--hHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999986422110 00000111122334677899999999999999999999999998
Q ss_pred CCCCCChHHHH-HHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH-HhhcCCCCHHHHHHHHH
Q 013299 92 PCWNLDAETTA-KLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV-ALKRIEWDPSILDHLSF 169 (446)
Q Consensus 92 ~~~~~~~~~~~-~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~-~l~~~p~~~~~~~~lg~ 169 (446)
..+........ .+...++ .++...|++++|+..+..++... -....+.-..++..+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~--------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIE--------------------KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHH--------------------HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHH--------------------HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 72111111111 1111111 23445678999988775442211 11222344678899999
Q ss_pred HHHhcCCHHHHHHHHHhhCCC------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC---CChH---HHHHH
Q 013299 170 AFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP---KCLP---ALLIA 237 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P---~~~~---a~~~~ 237 (446)
++...|++++|+..+++++.. .|...+++..+|.++...|++++|...|++++ ...| +.+. .....
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR--TAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHSCCCHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHhhcCCCchHHHHHHHHH
Confidence 999999999999999988644 45567899999999999999999999999998 4432 2211 22334
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHc
Q 013299 238 SKICGEYPDLAEEGATFASRALECL 262 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~ 262 (446)
.+.++...+++++|..+|.++++..
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 4556777899999999999998854
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.26 E-value=6e-11 Score=95.63 Aligned_cols=86 Identities=20% Similarity=0.158 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+|+++++.+| ++..+++.+|.++..+|++++|+..|++
T Consensus 2 ~~a~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN-MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36889999999999999 59999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 013299 414 LLAALQVQT 422 (446)
Q Consensus 414 ~l~l~~~~~ 422 (446)
++++.|...
T Consensus 79 al~~~~~~~ 87 (115)
T 2kat_A 79 GLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHT
T ss_pred HHHhccccc
Confidence 999998654
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.23 E-value=9.7e-11 Score=98.75 Aligned_cols=141 Identities=13% Similarity=-0.008 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (446)
..+++.+|.++...|++++|+..+++++ ...|+.. +......++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~~~~~~----------------------------------~~~~~~~~~ 52 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRL--LIAKEFG----------------------------------DKAAERIAY 52 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHT----------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHhC----------------------------------CchHHHHHH
Confidence 4566777777777777777777777777 3332110 011123466
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 348 (446)
..+|.++... |++++|+..+++++ ++.+.. ..+++++|.++...|++++|+.++++++.+.+
T Consensus 53 ~~l~~~~~~~-----------g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 53 SNLGNAYIFL-----------GEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6777777554 46788888888888 776543 56889999999999999999999999998753
Q ss_pred CC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 349 GS-----NLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 349 ~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.. ...++..+|.++..+|++++|+.++++++++..
T Consensus 121 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 121 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 22 125788999999999999999999999998765
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=5.8e-12 Score=100.25 Aligned_cols=95 Identities=9% Similarity=-0.059 Sum_probs=85.8
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
+.+++.+|.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQ-----------GLYREAVHCYDQLI-TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 56788899888665 57899999999999 9999999999999999999999999999999999999997
Q ss_pred ------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 351 ------NLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 351 ------~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
. .++..+|.++..+|++++|+..+++.
T Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 72 EHVAIRS-KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp TSHHHHH-HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred cHHHHHH-HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5 78999999999999998887766543
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.17 E-value=5.9e-11 Score=92.74 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK-GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
.+.+|.++...|++++|+..|+++++++|++ .. +|..+|.++..+|++++|+.+|+++++.+| ++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~----- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP--DSPALQAR----- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHH-----
Confidence 3577888888999999999999999999988 48 899999999999999999999999999999 77776644
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 399 LVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
+.+.+++..|++++...|+..
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCCS
T ss_pred ---HHHHHHHHHHHHHhccCcccc
Confidence 567788888888888877543
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.12 E-value=2.8e-10 Score=89.64 Aligned_cols=75 Identities=8% Similarity=0.016 Sum_probs=68.3
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 346 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.+|++ ..+|+.+|.++..+|++++|+.+|+++++.+| +++.+|+.+|.++...|++++|++.|++++++.|...+
T Consensus 2 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPED-PFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 47998 59999999999999999999999999999999 89999999999999999999999999999999886543
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.11 E-value=6.1e-10 Score=84.97 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=76.2
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..+++.+|.++... +++++|+..|++++ +++|+++.+++++|.++...|++++|+..|++++.++|++
T Consensus 9 ~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 56788899888654 57899999999999 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcc
Q 013299 351 NLKGWLLMARILSAQK 366 (446)
Q Consensus 351 ~~~~~~~la~~~~~~g 366 (446)
..++.++|.++..+|
T Consensus 77 -~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 -AEAKQNLGNAKQKQG 91 (91)
T ss_dssp -HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcC
Confidence 599999999987765
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.11 E-value=1.8e-09 Score=100.21 Aligned_cols=88 Identities=16% Similarity=0.083 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-cc
Q 013299 295 ATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQ-----RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA-QK 366 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~--~~~a~~~lg~~~~~~-----~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~-~g 366 (446)
.+...+|...+++|+ ++||+ +..+|..+|.+|... |+.++|..+|++|++++|+....+++.+|..+.. +|
T Consensus 176 l~~l~~A~a~lerAl-eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 176 PDTVHAAVMMLERAC-DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHhHHHHHHHHHHHH-HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 456789999999999 99999 777999999999995 9999999999999999997413999999999988 49
Q ss_pred CHHHHHHHHHHHHhhcC
Q 013299 367 RYEDAETILNAALDQTG 383 (446)
Q Consensus 367 ~~~eA~~~~~~al~~~p 383 (446)
++++|..++++|+..+|
T Consensus 255 d~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 255 NRAGFDEALDRALAIDP 271 (301)
T ss_dssp CHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 99999999999999887
No 201
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.09 E-value=2.2e-09 Score=103.57 Aligned_cols=120 Identities=12% Similarity=-0.043 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-------HHHHH-HHHH--HHHhhcCCCCHHHHHHHHHHHHHc
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK-------LNAAH-YYAK--MLLKLEGGSNLKGWLLMARILSAQ 365 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~-------~~~A~-~~~~--~al~l~P~~~~~~~~~la~~~~~~ 365 (446)
..+.+|+.+|++|+ +++|+++.++-.++.++..... .-+++ ..++ .++.++|.+ +.++..++.++...
T Consensus 213 ~~~~~A~~l~e~Al-~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~-a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIV-QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL-SIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC-HHHHHHHHHHHHhC
Confidence 45789999999999 9999999999988888753211 11111 1222 234678888 49999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
|++++|+..+++|+.++| +...|..+|.++.-.|++++|++.|++++.++|.
T Consensus 291 gd~d~A~~~l~rAl~Ln~---s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEM---SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999998 4678899999999999999999999999999875
No 202
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=5.6e-07 Score=91.68 Aligned_cols=357 Identities=10% Similarity=-0.012 Sum_probs=218.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhh----------cCCCCCCCCccccHHHHHHHHHHHhH------HH-
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF----------AEGFPENLGADCKLQETLNRAVELLP------EL- 72 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~l~~~~~~a~~~l~------~~- 72 (446)
+...|.+++..+-.|+++.+...|++++...++.. ..+ +. .-.+...++.|+..+| .+
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~-~~----~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVS-QK----KFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC---------CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC-ch----HHHHHHHHHHHHHHcCCCcccHHHH
Confidence 34556777777777999999999999886421100 000 00 0023344556665433 12
Q ss_pred --HH--------HhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013299 73 --WK--------LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 73 --~~--------~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 142 (446)
|. .+|+.+.+-.+|+++|..| +.+...+......+....... . .-.. +-.....+..|.
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P----~~~~~~lw~~Y~~fE~~~~~~----~-~~~~--~~~~~~~y~~ar 157 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTP----MGSLSELWKDFENFELELNKI----T-GKKI--VGDTLPIFQSSF 157 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC----CTTHHHHHHHHHHHHHHHCHH----H-HHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhCh----hhhHHHHHHHHHHHHHHhccc----c-HHHH--HHHHhHHHHHHH
Confidence 22 3467788999999999973 222233323332221110000 0 0000 000001122232
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHH
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD---------LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~---------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 213 (446)
..+... ..... ..+...|...... ..++ .+.....|++++...|.++..|+.++..+...|+.++
T Consensus 158 ~~y~~~--~~~~~--~~s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 158 QRYQQI--QPLIR--GWSVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHH--HHHHH--TCSHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHH--HHHHh--hccHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 222110 01111 1244455443322 2222 3456789999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CC------cchhhhHHHHHhhchhHhhh
Q 013299 214 ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG--DG------CDQMESTANCLLGISLSAQS 285 (446)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~--~~------~~~~~~~a~~~lg~~~~~~~ 285 (446)
|...|++|+ .. |.+...++..+.. ...+ +. ++++.+... .. .......+|.......
T Consensus 232 ar~i~erAi--~~-P~~~~l~~~y~~~--~e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~---- 296 (493)
T 2uy1_A 232 AKKVVERGI--EM-SDGMFLSLYYGLV--MDEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV---- 296 (493)
T ss_dssp HHHHHHHHH--HH-CCSSHHHHHHHHH--TTCT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHH--hC-CCcHHHHHHHHhh--cchh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH----
Confidence 999999999 67 9988766644332 1122 11 333333210 00 0001122333333222
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013299 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (446)
Q Consensus 286 ~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~-~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~ 364 (446)
.+.+..+.|...|++|. . .+....+|...|.+....+ +.+.|...|+++++..|+.+ ..|...+..+..
T Consensus 297 -------~r~~~~~~AR~i~~~A~-~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~-~~~~~yid~e~~ 366 (493)
T 2uy1_A 297 -------LKKRGLELFRKLFIELG-N-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST-LLKEEFFLFLLR 366 (493)
T ss_dssp -------HHHHCHHHHHHHHHHHT-T-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHH
T ss_pred -------HHcCCHHHHHHHHHHhh-C-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHH
Confidence 23456889999999984 3 2346777777776666555 69999999999999999985 888888998999
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
.|+.+.|...|+++ + ....+|..........|+.+.+.+.+++.++-..
T Consensus 367 ~~~~~~aR~l~er~----~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 367 IGDEENARALFKRL----E--KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HTCHHHHHHHHHHS----C--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----H--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 99999999999998 4 4677888888888999999999999999998664
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.06 E-value=4.7e-10 Score=114.05 Aligned_cols=146 Identities=12% Similarity=-0.014 Sum_probs=111.8
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (446)
+.....++..+..+|+|++|+..|+++|++.++.+..++|. ....+..+|.+|..+|++++|+.+|+++
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~-----------~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY-----------VLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44566788889999999999999999999987766433343 5678889999999999999999999999
Q ss_pred hCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 013299 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (446)
Q Consensus 90 l~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (446)
|.+ -- ..+ =...|+-...+++||.
T Consensus 378 L~i----~~-------~~l---------------------------------------------G~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 378 VDG----YM-------KLY---------------------------------------------HHNNAQLGMAVMRAGL 401 (490)
T ss_dssp HHH----HH-------HHS---------------------------------------------CTTCHHHHHHHHHHHH
T ss_pred HHH----HH-------HHc---------------------------------------------CCCCHHHHHHHHHHHH
Confidence 986 10 000 0112333446778999
Q ss_pred HHHhcCCHHHHHHHHHhhCCC-----CCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 170 AFSIAGDLSSLATQIEELLPG-----IINRK---ERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
+|..+|++++|+..|++|+++ .|++| +...+|+.++..+|++++|+..|+++.
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888754 45554 455678888888888888888888766
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.06 E-value=3.1e-10 Score=88.59 Aligned_cols=79 Identities=18% Similarity=0.040 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLS-ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~-a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
.|++++|+..|++++ +.+|+++. +++++|.++..+|++++|+..|+++++++|+++ .++.. +.+.+++.
T Consensus 13 ~~~~~~A~~~~~~al-~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~--------~~~~~a~~ 82 (99)
T 2kc7_A 13 QGDIENALQALEEFL-QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQAR--------KMVMDILN 82 (99)
T ss_dssp HTCHHHHHHHHHHHH-HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-HHHHH--------HHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHH--------HHHHHHHH
Confidence 467899999999999 99999999 999999999999999999999999999999995 87754 78899999
Q ss_pred HHHHHHhhcC
Q 013299 374 ILNAALDQTG 383 (446)
Q Consensus 374 ~~~~al~~~p 383 (446)
.|++++..+|
T Consensus 83 ~~~~~~~~~p 92 (99)
T 2kc7_A 83 FYNKDMYNQL 92 (99)
T ss_dssp HHCCTTHHHH
T ss_pred HHHHHhccCc
Confidence 9999998888
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.02 E-value=6.7e-09 Score=100.26 Aligned_cols=157 Identities=11% Similarity=0.012 Sum_probs=109.3
Q ss_pred hCCCCCCcHHHHH--HHHHHHHHCCC---hHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 187 LLPGIINRKERYH--ILALCYYGAGE---DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 187 al~~~p~~~~~~~--~lg~~~~~~g~---~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
+...-|.++++|- ..|..++..+. ..+|+.+|++|+ +++|+++.++..++..+.. ...
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al--~lDP~~a~A~A~la~a~~~---------------~~~ 248 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV--QSSPEFTYARAEKALVDIV---------------RHS 248 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH---------------HHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH---------------Hhc
Confidence 3334455555543 34566555443 367888888888 7888888777654432210 000
Q ss_pred cCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013299 262 LGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAK 341 (446)
Q Consensus 262 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 341 (446)
..+... ........++.. ..++ ..+|.++.++..+|.++...|++++|+..++
T Consensus 249 ~~~~~~-------------------------~~~~~l~~a~~a-~~a~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~ 301 (372)
T 3ly7_A 249 QHPLDE-------------------------KQLAALNTEIDN-IVTL-PELNNLSIIYQIKAVSALVKGKTDESYQAIN 301 (372)
T ss_dssp HSCCCH-------------------------HHHHHHHHHHHH-HHTC-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCch-------------------------hhHHHHHHHHHH-HHhc-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 111100 001112334442 2456 7889999999999999999999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013299 342 MLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (446)
Q Consensus 342 ~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 391 (446)
+|+.++|+ +.+|..+|.++...|++++|++.|++|+.++| .....+
T Consensus 302 rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P--~~~t~~ 347 (372)
T 3ly7_A 302 TGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP--GANTLY 347 (372)
T ss_dssp HHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC--SHHHHH
T ss_pred HHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcChHH
Confidence 99999985 48999999999999999999999999999999 555433
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.01 E-value=7.6e-09 Score=86.59 Aligned_cols=111 Identities=20% Similarity=0.072 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDA 371 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA 371 (446)
+++++|+.+|+++. +..+..+ . ||.+|...+.+++|+.+|++|... ++ ..+++++|.++.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa-~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKAC-ELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NS-GNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHH-HTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHH-cCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHcCCCCCccHHHH
Confidence 56899999999999 8874444 4 999999999999999999999886 56 5999999999999 8999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~eA~~~~~~~l~l~ 418 (446)
+.+|++|.+. .++.+++++|.++.. .+++++|+..|+++.+.-
T Consensus 81 ~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999999875 478999999999999 999999999999998863
No 207
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=3.1e-08 Score=101.05 Aligned_cols=122 Identities=6% Similarity=-0.099 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH----------------
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI---------------- 361 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~---------------- 361 (446)
.+.....|++++ ...|+++..|+..+..+...|+.++|...|++|+.. |.+. ..|...+..
T Consensus 195 ~~Rv~~~ye~al-~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-~l~~~y~~~~e~~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 195 ESRMHFIHNYIL-DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-FLSLYYGLVMDEEAVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-HHHHHHHHHTTCTHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-HHHHHHHhhcchhHHHHHHHHHHHh
Confidence 345678999999 999999999999999999999999999999999999 9873 555544432
Q ss_pred ------------------------HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Q 013299 362 ------------------------LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG-QLKGAVETYTHLLA 416 (446)
Q Consensus 362 ------------------------~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-~~~eA~~~~~~~l~ 416 (446)
+...|..+.|...|++| . .|. ....+|...|.+....| +++.|...|+.+++
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 23467788899999999 4 442 35667777777777766 59999999999999
Q ss_pred HHhhhhhhc
Q 013299 417 ALQVQTKTF 425 (446)
Q Consensus 417 l~~~~~~~~ 425 (446)
..|+.++.+
T Consensus 349 ~~~~~~~~~ 357 (493)
T 2uy1_A 349 KHPDSTLLK 357 (493)
T ss_dssp HCTTCHHHH
T ss_pred HCCCCHHHH
Confidence 877655443
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.00 E-value=2.4e-09 Score=99.35 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=97.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHc-----cC
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAE---Q--R------KLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQ-----KR 367 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~---~--~------~~~~A~~~~~~al~l~P~--~~~~~~~~la~~~~~~-----g~ 367 (446)
.+++.+.+|+++++++..|.+... . | ....|..++++|++++|+ + ..+|..+|.+|... |+
T Consensus 141 ~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~-GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 141 HKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE-GAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc-CHHHHHHHHHHHhCCCccCCC
Confidence 344437899999999999888754 1 2 357899999999999999 5 37999999999995 99
Q ss_pred HHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhhh
Q 013299 368 YEDAETILNAALDQTGKWEQ-GELLRTKAKVQLV-QGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 368 ~~eA~~~~~~al~~~p~~~~-~~~~~~~a~~~~~-~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.++|..+|++|++++| +. ...++..|..+.. +|++++|.+.+++++...|..
T Consensus 220 ~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999 64 9999999999988 599999999999999988753
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.99 E-value=9.7e-09 Score=85.93 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013299 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (446)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~ 325 (446)
+++++|+.+|+++.+.-++ .+. +|.+|... +..++|+.+|+++. +. .++.++++||.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-------~a~--lg~~y~~g-----------~~~~~A~~~~~~Aa-~~--g~~~a~~~Lg~ 65 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-------FGC--LSLVSNSQ-----------INKQKLFQYLSKAC-EL--NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-------THH--HHHHTCTT-----------SCHHHHHHHHHHHH-HT--TCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-------hhh--HHHHHHcC-----------CCHHHHHHHHHHHH-cC--CCHHHHHHHHH
Confidence 3678999999999985322 234 88887653 24567999999999 76 89999999999
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013299 326 EYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (446)
Q Consensus 326 ~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a 395 (446)
+|.. .+++++|+.+|++|.+. ++ ..++++||.++.. .+++++|+.+|++|.+.. +..+.++++
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~l~ 136 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG----SEDACGILN 136 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHC-
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHh
Confidence 9999 89999999999999886 56 4999999999999 999999999999999874 445555544
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.95 E-value=1.9e-09 Score=109.57 Aligned_cols=128 Identities=9% Similarity=-0.014 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCC--HHHHHHHH
Q 013299 295 ATRQAKALQALVSAARST-----NMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMA 359 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~-----~P~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~--~~~~~~la 359 (446)
+|++++|+..+++++ ++ .|+++ .++.+||.+|..+|++++|+.++++++++ -|++| +..+++||
T Consensus 322 qg~~~eA~~l~~~aL-~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 322 EGLYHEVVKLCRECL-EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467899999999998 74 46665 56789999999999999999999999986 36664 25688999
Q ss_pred HHHHHccCHHHHHHHHHHHHhh-----cCCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhc
Q 013299 360 RILSAQKRYEDAETILNAALDQ-----TGKWEQ---GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (446)
Q Consensus 360 ~~~~~~g~~~eA~~~~~~al~~-----~p~~~~---~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~ 425 (446)
.+|..+|+|++|+..+++|+++ -| ++ .+...+++.++.++|++++|...|+++.+-.-++.+.|
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~--~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGP--SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999965 35 44 45567899999999999999999999988664444433
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.90 E-value=9.6e-09 Score=79.76 Aligned_cols=70 Identities=17% Similarity=0.057 Sum_probs=66.6
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 313 NMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+|+|++++..+|.+++..++ .++|...+++|++++|++ ..+++.+|.+++..|+|++|+.+++++++.+|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 79999999999999987665 799999999999999999 59999999999999999999999999999999
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.89 E-value=1.8e-08 Score=84.74 Aligned_cols=100 Identities=11% Similarity=0.029 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhc-C-CCCHHHHHHHHHHHHHccCHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLE-G-GSNLKGWLLMARILSAQKRYED 370 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~l~-P-~~~~~~~~~la~~~~~~g~~~e 370 (446)
+....+.+.|.+.+ ..+|.+.++.|++|+++...+ +.++++.+++..++.+ | ++ .++++++|..++++|+|++
T Consensus 12 ~~l~~~~~~y~~e~-~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~-rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHH-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch-HHHHHHHHHHHHHccCHHH
Confidence 35678888999999 999999999999999999988 7779999999999999 8 45 5999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 371 AETILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 371 A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
|..+++++|+..| +|..+...+-.+..
T Consensus 90 A~~y~~~lL~ieP--~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 90 ALKYVRGLLQTEP--QNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 9999999999999 88888777655443
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.81 E-value=1.9e-08 Score=78.12 Aligned_cols=74 Identities=11% Similarity=-0.027 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 157 IEWDPSILDHLSFAFSIAGD---LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
+|++++++..+|.++...++ .++|...++++++++|+++.+++.+|..++..|+|++|+..+++++ ..+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l--~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL--DSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCcc
Confidence 58999999999999986665 6999999999999999999999999999999999999999999999 88888554
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=6.6e-07 Score=75.18 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-C-CCHHHHHHHHHH
Q 013299 249 EEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN-M-RDLSILYRLSLE 326 (446)
Q Consensus 249 ~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~-P-~~~~a~~~lg~~ 326 (446)
..+...|.+.++..+++ ..+.+.+|.++.... ...+.++++..++.++ +.+ | ++.+++|+||..
T Consensus 15 ~~~~~~y~~e~~~~~~~-----~~~~F~ya~~Lv~S~--------~~~~~~~gI~lLe~ll-~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVS-----KSTQFEYAWCLVRSK--------YNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHTCS--------SHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCc-----HHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHH
Confidence 34555666666633322 578888888886532 1346789999999999 888 7 679999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 013299 327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (446)
Q Consensus 327 ~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~ 362 (446)
+++.|+|++|+.+++++++++|++ ..+......+-
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n-~QA~~Lk~~ie 115 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLID 115 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 999999999999999999999999 48777655543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.47 E-value=3.5e-07 Score=91.34 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCC--HHHHHHHHH
Q 013299 296 TRQAKALQALVSAARST-----NMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMAR 360 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~-----~P~~~~---a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~ 360 (446)
|++++|+..|++++ ++ .|+++. ++.+||.+|..+|++++|+.++++++++ -|++| +..+++||.
T Consensus 312 g~~~eA~~~~~~~L-~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQ-EKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH-HHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46789999999988 74 577764 5689999999999999999999999876 35553 246889999
Q ss_pred HHHHccCHHHHHHHHHHHHhhc-----CCCCcHHHH
Q 013299 361 ILSAQKRYEDAETILNAALDQT-----GKWEQGELL 391 (446)
Q Consensus 361 ~~~~~g~~~eA~~~~~~al~~~-----p~~~~~~~~ 391 (446)
+|..+|+|++|+..|++|+++. | +++...
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~--~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGK--DHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCT--TCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCC--CChHHH
Confidence 9999999999999999998753 5 665543
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=1.7e-06 Score=68.23 Aligned_cols=77 Identities=8% Similarity=-0.020 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013299 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE-------GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-------P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 388 (446)
++.-.+.+|..+...|+++.|+..|++|+... +.. ..++..+|.++..+|++++|+.++++++++.| ++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~-~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P--~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDK-VSVLDYLSYAVYQQGDLDKALLLTKKLLELDP--EHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccH-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCH
Confidence 45667899999999999999999999999874 233 47899999999999999999999999999999 888
Q ss_pred HHHHHHH
Q 013299 389 ELLRTKA 395 (446)
Q Consensus 389 ~~~~~~a 395 (446)
.+..+++
T Consensus 81 ~~~~n~~ 87 (104)
T 2v5f_A 81 RANGNLK 87 (104)
T ss_dssp HHHHHHH
T ss_pred HHHhhHH
Confidence 8877765
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.46 E-value=6.4e-07 Score=70.78 Aligned_cols=76 Identities=21% Similarity=0.108 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCC-------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPG-------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
++.-.+.+|..+...|++..|+..|++|++. .+..++++.+||.+++.+|++++|+..+++++ .++|+++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al--~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCHH
Confidence 4567789999999999999999999999975 35678999999999999999999999999999 89999988
Q ss_pred HHHHH
Q 013299 233 ALLIA 237 (446)
Q Consensus 233 a~~~~ 237 (446)
+..++
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 76544
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.45 E-value=4.5e-07 Score=90.58 Aligned_cols=92 Identities=7% Similarity=-0.011 Sum_probs=77.5
Q ss_pred HcCCHHHHHHHHHHHHhh-----cCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-----CC-CCcHHHHHHHH
Q 013299 329 EQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQT-----GK-WEQGELLRTKA 395 (446)
Q Consensus 329 ~~~~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~-~~~~~~~~~~a 395 (446)
..|++++|+.+|++++++ .|+|+ +..+.++|.+|..+|+|++|+.+++++++.. |+ ++-...++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 358999999999999985 46663 2568899999999999999999999999652 30 03356689999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 396 KVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 396 ~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
.++..+|++++|+..|++++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999854
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.34 E-value=5.5e-06 Score=67.07 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhc-CCCCHHHHHHHHHHHHHccCHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA---AHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~---A~~~~~~al~l~-P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.....+...|.+.+ ..++.+.++.|++|+++...++..+ ++.+++..+..+ |...-++++.+|..++++|+|++|
T Consensus 15 ~~l~~~~~~y~~e~-~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHh-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34667888899999 8899999999999999999887777 999999999987 632258999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQL 399 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~ 399 (446)
..+++..|+..| +|..+...+..+..
T Consensus 94 ~~~~~~lL~~eP--~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 94 LKYVRGLLQTEP--QNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 999999999999 88888777655543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.33 E-value=2.9e-06 Score=84.68 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=84.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhh-----cCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhc----CCCCc---HHHH
Q 013299 326 EYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQT----GKWEQ---GELL 391 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~~~---~~~~ 391 (446)
-+..+|++++|+..+++++++ .|+|+ +..+.++|.++..+|+|++|+.+++++++.. |. ++ ...+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-SHPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-CChHHHHHH
Confidence 355689999999999999975 45553 2568899999999999999999999999652 21 33 5568
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhccCCcchhhHHhhh
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRFYKVYFMR 438 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 438 (446)
+++|.++..+|++++|+..|++++++..... ...+|.--.++-+.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l--G~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH--GREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CTTSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 8999999999999999999999999985422 22345444444443
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.28 E-value=1.3e-06 Score=87.18 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--HHHHHHH
Q 013299 294 RATRQAKALQALVSAARST-----NMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLM 358 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~-----~P~~~---~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P~~~--~~~~~~l 358 (446)
..|++++|+..+++++ ++ .|+++ .++.+||.+|..+|++++|+.++++++.+. |++| +..+++|
T Consensus 299 ~~g~~~~a~~~~~~~L-~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAII-SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHH-TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHH-HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3567899999999999 75 46676 467899999999999999999999999763 6664 2468899
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh
Q 013299 359 ARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 359 a~~~~~~g~~~eA~~~~~~al~~ 381 (446)
|.++..+|++++|+..+++|+++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999965
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.98 E-value=0.0011 Score=67.36 Aligned_cols=116 Identities=8% Similarity=0.002 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHccCHHHHH
Q 013299 296 TRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EGGSNLKGWLLMARILSAQKRYEDAE 372 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~~~la~~~~~~g~~~eA~ 372 (446)
+..++|.+.|++.. +.. +-|..++..+-..+.+.|++++|+..|++.... .|+ ...|..+-..+...|+.++|.
T Consensus 84 ~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 84 PGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHH
Confidence 45788999999888 543 447889999999999999999999999998764 566 488999999999999999999
Q ss_pred HHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013299 373 TILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (446)
Q Consensus 373 ~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l 417 (446)
..+++..+. .| +...|..+-..+.+.|+.++|.+.+++.-+.
T Consensus 161 ~l~~~M~~~G~~P---d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 161 EVDAHMVESEVVP---EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHTTCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 999999865 46 6678888999999999999999999987553
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.78 E-value=0.00077 Score=55.35 Aligned_cols=96 Identities=8% Similarity=0.038 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL---NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~---~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 375 (446)
......|.+-. .++-.+++.|++|+++....+. .+++.+++..+..+|...-++++.+|..+.++|+|++|..++
T Consensus 23 ~~lr~qY~~E~--~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 23 EILRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHTT--STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444322 2467899999999999998744 579999999999999654689999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHH
Q 013299 376 NAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 376 ~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
+..|+..| +|..+...+..+.
T Consensus 101 d~lL~~eP--~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 101 DTLFEHER--NNKQVGALKSMVE 121 (144)
T ss_dssp HHHHHTCC--CCHHHHHHHHHHH
T ss_pred HHHHhcCC--CcHHHHHHHHHHH
Confidence 99999999 8888777665544
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.77 E-value=0.00013 Score=59.08 Aligned_cols=81 Identities=21% Similarity=0.138 Sum_probs=72.8
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhhCCCC-C-CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCC
Q 013299 154 LKRIEWDPSILDHLSFAFSIAGDLSS---LATQIEELLPGI-I-NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (446)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P 228 (446)
....+.+.++-+++|.++...++... ++..++..+..+ | ..-+..|.||..+++.|+|++|+..++..| +.+|
T Consensus 28 ~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL--~~eP 105 (126)
T 1nzn_A 28 KAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL--QTEP 105 (126)
T ss_dssp HHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCT
T ss_pred hccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhCC
Confidence 45567899999999999999987766 999999999988 5 678999999999999999999999999999 8999
Q ss_pred CChHHHHH
Q 013299 229 KCLPALLI 236 (446)
Q Consensus 229 ~~~~a~~~ 236 (446)
+|..+..+
T Consensus 106 ~n~QA~~L 113 (126)
T 1nzn_A 106 QNNQAKEL 113 (126)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 99987654
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.77 E-value=0.00021 Score=58.02 Aligned_cols=83 Identities=6% Similarity=0.014 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013299 316 DLSILYRLSLEYAEQRKL---NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (446)
Q Consensus 316 ~~~a~~~lg~~~~~~~~~---~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~ 392 (446)
.+++.|++|+++....+. .+++.++...+..+|...-++++.+|..+.++|+|++|..+++..|+..| +|..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP--~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER--NNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT--TCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CCHHHHH
Confidence 679999999999987644 56999999999999965358999999999999999999999999999999 8888877
Q ss_pred HHHHHHHH
Q 013299 393 TKAKVQLV 400 (446)
Q Consensus 393 ~~a~~~~~ 400 (446)
.+..+..+
T Consensus 117 Lk~~Ie~k 124 (134)
T 3o48_A 117 LKSMVEDK 124 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655543
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.65 E-value=0.0041 Score=63.13 Aligned_cols=161 Identities=9% Similarity=-0.052 Sum_probs=101.5
Q ss_pred HHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHc-CCCcchhhh
Q 013299 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE--------YPDLAEEGATFASRALECL-GDGCDQMES 271 (446)
Q Consensus 201 lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~~~~--------~~~~~~eA~~~~~~al~~~-~~~~~~~~~ 271 (446)
+-..+.+.|+.++|+..|++.......|+.. .+..+...|.. ..+..++|...|++..+.- .|+ .
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~-tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd-----~ 105 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQY-HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN-----E 105 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-----H
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-----H
Confidence 3344555666666666666655323445432 23323223221 1223567777777766531 222 2
Q ss_pred HHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--cC
Q 013299 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL--EG 348 (446)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P 348 (446)
..|..+-.+|.+ .|+.++|+..|++.. +.. +-|..++..+-..|.+.|+.++|...|++..+. .|
T Consensus 106 ~tyn~lI~~~~~-----------~g~~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 106 ATFTNGARLAVA-----------KDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHHHHHHHH-----------HTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHh-----------cCCHHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 344444444433 356788888888877 543 446777888888888888888888888887664 45
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 349 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
+ ...|..+-..+.+.|+.++|..++++.-+.
T Consensus 174 d--~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 174 E--EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 5 377888888888888888888888887653
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.57 E-value=0.00059 Score=56.46 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=89.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 013299 311 STNMRDLSILYRLSLEYAEQRKL------NAAHYYAKMLLKLEGGSN-------LKGWLLMARILSAQKRYEDAETILNA 377 (446)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~~~~------~~A~~~~~~al~l~P~~~-------~~~~~~la~~~~~~g~~~eA~~~~~~ 377 (446)
-+.|+|++.|......+...|+. +.-+..|++|+..-|-.. ...|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 36899999999999998888998 888899999999777521 2456666755 566999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 378 al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+++... ..+.+|...|....++|+.+.|...+.+++.+.|+
T Consensus 86 a~~~hK--kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 86 ARANCK--KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHCT--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHhH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 999855 67999999999999999999999999999998864
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.55 E-value=0.0013 Score=54.37 Aligned_cols=54 Identities=6% Similarity=-0.077 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
++.++|.+.|+.++ .++...+.+|...|..-.++|++..|.+.+.+|+.+.|..
T Consensus 74 ~D~d~aR~vy~~a~-~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMAR-ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHH-HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56678888888888 7888888888888888888888888888888888888874
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.29 E-value=0.0017 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.046 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013299 387 QGELLRTKAKVQLVQGQLKGAVETYTH 413 (446)
Q Consensus 387 ~~~~~~~~a~~~~~~g~~~eA~~~~~~ 413 (446)
..++.|.++.|+.++|++++|+..++.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 458899999999999999999998763
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.22 E-value=0.002 Score=52.23 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=66.5
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
..+.+.++.++.... ...+..+++..++..+ +.+|. .-+.+|.||..+++.|+|++|..+.+..++.+|+
T Consensus 40 ~qt~F~yAw~Lv~S~--------~~~d~~~GI~LLe~l~-~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSS--------CHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 456677776664432 1346789999999999 89994 5889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARIL 362 (446)
Q Consensus 350 ~~~~~~~~la~~~ 362 (446)
+. .+......|-
T Consensus 111 N~-QA~~Lk~~Ie 122 (134)
T 3o48_A 111 NK-QVGALKSMVE 122 (134)
T ss_dssp CH-HHHHHHHHHH
T ss_pred CH-HHHHHHHHHH
Confidence 94 8777665554
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.11 E-value=0.0013 Score=55.55 Aligned_cols=100 Identities=12% Similarity=0.033 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC---CCC-----------
Q 013299 295 ATRQAKALQALVSAARSTNMRDL---------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEG---GSN----------- 351 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~---------~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P---~~~----------- 351 (446)
.+.|+-|+-....++ .+..+++ ++++.+|.+++..|+|..|...|++||.+.- .++
T Consensus 33 ~~LY~sA~~La~lLl-Sl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss 111 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLL-TLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAS 111 (167)
T ss_dssp TTCHHHHHHHHHHHH-HHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------
T ss_pred hhhHHHHHHHHHHHH-HhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCC
Confidence 356788888777766 6554444 3889999999999999999999999876532 110
Q ss_pred ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013299 352 ----------LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (446)
Q Consensus 352 ----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~ 398 (446)
.+..+.++.|+.++|++++|+..++..-... ..+.+...+|.++
T Consensus 112 ~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~---Rt~kvnm~LakLy 165 (167)
T 3ffl_A 112 TPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ---RTPKINMLLANLY 165 (167)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG---CCHHHHHHHHHHC
T ss_pred CcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh---cCHHHHHHHHHHh
Confidence 2578899999999999999999987643221 3567777777765
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.07 E-value=0.0037 Score=51.28 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=66.1
Q ss_pred hHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM-RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
....|+++.++.... ...+..+++..++..+ ..+| +.-+.+|.||..+++.|+|++|..+++..|+.+|+
T Consensus 39 ~~t~F~YAw~Lv~S~--------~~~di~~GI~LLe~l~-~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 39 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp HHHHHHHHHHHHHSS--------SHHHHHHHHHHHHHHH-HHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 556677766664432 2356789999999999 8888 46789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 013299 350 SNLKGWLLMARIL 362 (446)
Q Consensus 350 ~~~~~~~~la~~~ 362 (446)
+. .+......|-
T Consensus 110 n~-QA~~Lk~~Ie 121 (144)
T 1y8m_A 110 NK-QVGALKSMVE 121 (144)
T ss_dssp CH-HHHHHHHHHH
T ss_pred cH-HHHHHHHHHH
Confidence 94 7766655443
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.029 Score=59.21 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhh--------cCCCC---------HHHHHH
Q 013299 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAE---QRKLNAAHYYAKMLLKL--------EGGSN---------LKGWLL 357 (446)
Q Consensus 298 ~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~---~~~~~~A~~~~~~al~l--------~P~~~---------~~~~~~ 357 (446)
++.|+..+++.. +.+|... +++..+.+... ..+--+|+....++++- .+.+. ...+..
T Consensus 265 ~~~a~~~le~L~-~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLT-KKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHH-HHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 578999999999 9999764 34444433322 22345677777777642 22220 123444
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 358 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
-+..+...|+|+-|+.+-++|+...| +.+..|+.++.+|..+|+++.|+-.+...
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aP--seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELAL--DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCc--hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 57777889999999999999999999 89999999999999999999999887755
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.064 Score=56.65 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~a 378 (446)
+.--+..+...|+++-|+.+.++|+...|.. ..+|..|+.+|..+|+|+.|+-.+.-+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344666777899999999999999999998 799999999999999999999888765
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.57 E-value=0.23 Score=48.37 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
+...++..+...|++.+|+..+.+++..+| -+-.+|..+-.++...|+..+|++.|+++-+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 444566677788888888888888888888 777788888888888888888888888776654
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.56 E-value=0.42 Score=46.44 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcC--CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc----CCCC-cHHHH
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEG--GS---NLKGWLLMARILSAQKRYEDAETILNAALDQT----GKWE-QGELL 391 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P--~~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~~-~~~~~ 391 (446)
.||.+|.+.|+|.+|...+.+.+.--. ++ -.+.+..-..+++.+|++..+..++.+|.... |.|. .+.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 566666666666666666665554211 11 12334445555666666666666666665332 2000 12333
Q ss_pred HHHHHHHH-HhCCHHHHHHHHHHHH
Q 013299 392 RTKAKVQL-VQGQLKGAVETYTHLL 415 (446)
Q Consensus 392 ~~~a~~~~-~~g~~~eA~~~~~~~l 415 (446)
..-|.++. ..++|.+|-..|-.++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 44455566 5666666666665554
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.53 E-value=0.26 Score=41.53 Aligned_cols=101 Identities=11% Similarity=0.048 Sum_probs=77.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--h--cCCC--
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD--Q--TGKW-- 385 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~--~p~~-- 385 (446)
+-|..++...-++.++.-.|.+..|+-.+.+ + +...+.+..+.++..+++|..|+..++..+. . +|+.
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---l---NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK---L---NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHHT---C---CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHHh---c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 5677778888889999999999998876532 2 2357888899999999999999999999992 2 3321
Q ss_pred ---------CcHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013299 386 ---------EQGEL-LRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 386 ---------~~~~~-~~~~a~~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
.+-+. +..+|.++...|..+||+..|.......
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 33444 4577999999999999999999887775
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.15 E-value=0.13 Score=51.74 Aligned_cols=83 Identities=11% Similarity=-0.006 Sum_probs=55.3
Q ss_pred HHhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHH
Q 013299 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (446)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 354 (446)
.....++...|+.+ .....+..|..+|.+|+ .++|++...++.||.+....|+.-+|+-+|-+++......+ .+
T Consensus 149 ~~~hr~l~~LGDL~----RY~~~~~~A~~~Y~~A~-~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~-~a 222 (497)
T 1ya0_A 149 YICQHCLVHLGDIA----RYRNQTSQAESYYRHAA-QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP-AA 222 (497)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHH-HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH-HH
T ss_pred HHHHHHHHHcccHH----HHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh-hH
Confidence 34444555555432 11234567777788887 77888877778888777777777777777777777666563 77
Q ss_pred HHHHHHHHH
Q 013299 355 WLLMARILS 363 (446)
Q Consensus 355 ~~~la~~~~ 363 (446)
+.++..++.
T Consensus 223 ~~nL~~~f~ 231 (497)
T 1ya0_A 223 STNLQKALS 231 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766553
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.96 E-value=1.9 Score=41.86 Aligned_cols=181 Identities=14% Similarity=-0.024 Sum_probs=108.6
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013299 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (446)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (446)
-+.++..||.+|.+.|+.++-..........=+.+.-.-++.+.+.+-..+.. . + +..+.-
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~--~----------------~-~~~~~~ 78 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLD--M----------------D-AGTGIE 78 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTT--S----------------C-CCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc--C----------------C-CcHHHH
Confidence 36788899999999999999999888876551111211122233333222110 0 1 112222
Q ss_pred HHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhCC----CCC--CcHHHHHHHHHHHHHCCCh
Q 013299 142 ILLLMILLRKVALKRIEWDPS----ILDHLSFAFSIAGDLSSLATQIEELLP----GII--NRKERYHILALCYYGAGED 211 (446)
Q Consensus 142 ~~~l~~~~~~~~l~~~p~~~~----~~~~lg~~l~~~~~~~~A~~~~~~al~----~~p--~~~~~~~~lg~~~~~~g~~ 211 (446)
+.+.+.++..+- +..-.. .-..+|..|...|++.+|...+.+.++ .+. --.+.+..-..+|...|++
T Consensus 79 ~~~~~~~~~~a~---~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~ 155 (394)
T 3txn_A 79 VQLCKDCIEWAK---QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL 155 (394)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH
Confidence 333222221111 011111 123789999999999999887776654 221 1235566678889999999
Q ss_pred HHHHHHHHHHhcC--C--CCCCChHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCC
Q 013299 212 LVALNLLRTLLSG--S--EDPKCLPALLIASKICGE-YPDLAEEGATFASRALECLGD 264 (446)
Q Consensus 212 ~eA~~~~~~al~~--~--~~P~~~~a~~~~~~~~~~-~~~~~~eA~~~~~~al~~~~~ 264 (446)
..+...|.++.+. . .+|.-...+...+|+++. ..+++.+|-.+|-.+++..+.
T Consensus 156 ~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 156 PKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 9999999988621 1 122222233445667777 789999999999999875543
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.95 E-value=3 Score=43.03 Aligned_cols=116 Identities=11% Similarity=-0.015 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHH
Q 013299 296 TRQAKALQALVSAARSTNMRDLSILY----RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (446)
Q Consensus 296 ~~~~eAl~~~~~al~~~~P~~~~a~~----~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA 371 (446)
.+.+.|...+.+.. ...+-+..... .+|.-+...+...++...+.++....+++ ...-...+. ....|+++.|
T Consensus 228 ~d~~~A~~~~~~~~-~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~-Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLA-QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRM-ALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHH-HHHHTCHHHH
T ss_pred cCHHHHHHHHHhhh-hccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHH-HHHCCCHHHH
Confidence 35678888888876 54444444333 23333333443667778888766544443 233333344 4467999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
..++++.-...+ ......|=+|.++...|+.++|...|+++..
T Consensus 305 ~~~~~~l~~~~~--~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc--ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999987655333 4567778899999999999999999998865
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.90 E-value=0.24 Score=45.11 Aligned_cols=119 Identities=14% Similarity=0.011 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHccCHHHHHH
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM-ARILSAQKRYEDAET 373 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~l-a~~~~~~g~~~eA~~ 373 (446)
.+..++|++.....+ +.+|.|++....|-.++.-.|+++.|..-++.+.+++|+.. ..-..+ ..|. |..
T Consensus 10 ~g~L~~al~~~~~~V-R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~-~~a~~yr~lI~--------aE~ 79 (273)
T 1zbp_A 10 EGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL-PGASQLRHLVK--------AAQ 79 (273)
T ss_dssp TTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHH--------HHH
T ss_pred CCCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh-HHHHHHHHHHH--------HHH
Confidence 356899999999999 99999999999999999999999999999999999999973 332221 1111 111
Q ss_pred HHHHHHh--hcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 013299 374 ILNAALD--QTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (446)
Q Consensus 374 ~~~~al~--~~p~----~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~~ 423 (446)
.=.+.+. ..|. +.........+......|+.++|.+.-.++++..|....
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111221 1121 023444556788888999999999999999999876443
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.82 E-value=0.98 Score=43.81 Aligned_cols=60 Identities=10% Similarity=-0.120 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 379 (446)
+...++..+...|++++|+..+.+++..+|-+ ..+|..+-.++...|+..+|+..|++.-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44456777888999999999999999999998 4899999999999999999999988764
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.74 E-value=1.4 Score=37.19 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCC-----------
Q 013299 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGS----------- 225 (446)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----------- 225 (446)
.|..++--..++..+.-.|++.+++-.+.+ -+...+.+.-..||....+|..|+..++..|..+
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 366667777889999999999998877653 3456777888999999999999999999988322
Q ss_pred ----CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 226 ----EDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 226 ----~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
.||.+-+....+.+..+.+.|..+||+.++.+....
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 234555544443334455678999999999988775
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.16 E-value=0.28 Score=49.30 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (446)
.+..+|.+..-...+..|..+|.+|+.+.|++...|++||.+....|+.-+|+-.|-+++ ....-++.+..++..+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl--~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI--AVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH--SSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH--hcCCCChhHHHHHHHH
Confidence 445788888888899999999999999999999999999999999999999999999999 5555577776655433
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.99 E-value=1.6 Score=37.17 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 294 ~~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
..|+++.|.+..+ ++ ++...|..||......|+++-|+.+|+++ ++ .. .+..+|...|+-+.-..
T Consensus 17 ~lg~l~~A~e~a~----~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D-~~---~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAK----KL--NDSITWERLIQEALAQGNASLAEMIYQTQ-----HS-FD---KLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHH----HH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TC-HH---HHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHH----Hh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh-----CC-HH---HHHHHHHHhCCHHHHHH
Confidence 3456666655533 23 56778888888888888888888888776 22 22 24445555666655444
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013299 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYT 412 (446)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~ 412 (446)
.-+.|... . ++ ..- ..++..+|+++++++.|.
T Consensus 82 la~iA~~~-g--~~-n~a---f~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTR-E--DF-GSM---LLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHT-T--CH-HHH---HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHC-c--cH-HHH---HHHHHHcCCHHHHHHHHH
Confidence 44444332 2 22 111 123344555555555553
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.62 E-value=1.3 Score=48.05 Aligned_cols=91 Identities=12% Similarity=-0.076 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----hhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--cCCCCcHHHHH
Q 013299 320 LYRLSLEYAEQRKLNAAHYYAKMLL-----KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ--TGKWEQGELLR 392 (446)
Q Consensus 320 ~~~lg~~~~~~~~~~~A~~~~~~al-----~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~~ 392 (446)
++.+-..|.+.|++++|...|.+.. ...|+ ...|..+-..+.+.|+.++|...|++..+. .| |...|.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P---DvvTYn 204 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP---DLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---CHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---cHHHHH
Confidence 4444455556666666666664432 13444 356666666666666666666666665543 34 445555
Q ss_pred HHHHHHHHhCCH-HHHHHHHHHHH
Q 013299 393 TKAKVQLVQGQL-KGAVETYTHLL 415 (446)
Q Consensus 393 ~~a~~~~~~g~~-~eA~~~~~~~l 415 (446)
.+-..+.+.|+. ++|.+.+++..
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHH
Confidence 555555666653 45555555443
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.81 E-value=2.1 Score=45.09 Aligned_cols=48 Identities=8% Similarity=0.011 Sum_probs=38.6
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 170 ~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.....|++++|.+..+. .+++..|..+|..+...|+++.|+.+|.++-
T Consensus 661 ~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34567899988887642 3577889999999999999999999999865
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.34 E-value=0.67 Score=45.68 Aligned_cols=119 Identities=16% Similarity=0.051 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHccCHHHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE--GGSNLKGWLLMARILSAQKRYEDAETI 374 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~~~la~~~~~~g~~~eA~~~ 374 (446)
.+++.+..+++-. ..+..-..++..+|..|.+.|++++|.+.|.++...- +++-...+.....+....+++..+..+
T Consensus 112 ~l~~~~~~~~~~~-~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 112 ELNEKIQKLEEDD-EGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHCC-SCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3444444444322 2333445688899999999999999999999987754 333346788888888999999999999
Q ss_pred HHHHHhhcCCCCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013299 375 LNAALDQTGKWEQ----GELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (446)
Q Consensus 375 ~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~eA~~~~~~~l~ 416 (446)
+.++-....+..+ .......|.++...++|.+|-..|-.++.
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999755321112 23345667888899999999998877654
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.91 E-value=3.6 Score=43.32 Aligned_cols=74 Identities=9% Similarity=-0.066 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hcCCCCHHHHHHHHHHHHHcc
Q 013299 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--------LEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 295 ~~~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--------l~P~~~~~~~~~la~~~~~~g 366 (446)
.|++++|.+..+ ..+++..|-.+|..+.+.++++.|+.+|.++=. ...++ .+.+..++.+....|
T Consensus 665 ~~~~~~A~~~~~------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~-~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 665 VGQLTLARDLLT------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN-KEGLVTLAKDAETTG 737 (814)
T ss_dssp HTCHHHHHHHHT------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-HHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC-HHHHHHHHHHHHHcC
Confidence 356788877642 346789999999999999999999999998621 12233 244445555555555
Q ss_pred CHHHHHHHH
Q 013299 367 RYEDAETIL 375 (446)
Q Consensus 367 ~~~eA~~~~ 375 (446)
++..|...+
T Consensus 738 ~~~~A~~~~ 746 (814)
T 3mkq_A 738 KFNLAFNAY 746 (814)
T ss_dssp CHHHHHHHH
T ss_pred chHHHHHHH
Confidence 555555444
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.78 E-value=0.65 Score=42.32 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=51.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 326 ~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+.+.|++++|+......++-+|.+ +.....+-.++.-.|+++.|.+-++.+.+++|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~d-a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKD-ASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 4566789999999999999999998 59999999999999999999999999999999
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.05 E-value=12 Score=34.81 Aligned_cols=82 Identities=9% Similarity=-0.038 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------hh---cCCCCHHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL----------------KL---EGGSNLKGWLL 357 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al----------------~l---~P~~~~~~~~~ 357 (446)
-..+|+.+-.+.- ...-.||+.|..+|..+...|++.+|..+|-..- +. .|.. ...+..
T Consensus 115 fi~~ai~WS~~~g-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e-~dlf~~ 192 (312)
T 2wpv_A 115 VITGMNNWSIKFS-EYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST-VAEFFS 192 (312)
T ss_dssp HHHHHHHHHHHTS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH-HHHHHH
T ss_pred HHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch-HHHHHH
Confidence 3456666665544 3345799999999999999999999999884221 11 1221 233334
Q ss_pred HHH-HHHHccCHHHHHHHHHHHHh
Q 013299 358 MAR-ILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 358 la~-~~~~~g~~~eA~~~~~~al~ 380 (446)
.+. .+...|+...|...++...+
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 443 35677888888888776653
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.29 E-value=16 Score=33.96 Aligned_cols=83 Identities=4% Similarity=-0.184 Sum_probs=52.6
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh---------------cCC---CCCCChHHHHHHHH
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL---------------SGS---EDPKCLPALLIASK 239 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------------~~~---~~P~~~~a~~~~~~ 239 (446)
.+|+.+-.+.-...-++|+.|..+|..|+..|++.+|..+|-.+- + . -.|.....+...+-
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~-~~~~~~~~e~dlf~~RaV 195 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC-QVDDIEDSTVAEFFSRLV 195 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH-hcCCCCcchHHHHHHHHH
Confidence 345555544434455789999999999999999999998875211 0 1 23444444444444
Q ss_pred HHhcCCCCHHHHHHHHHHHHHH
Q 013299 240 ICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~ 261 (446)
+.+.-.++...|...++...+.
T Consensus 196 L~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4444467788888777766544
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.91 E-value=18 Score=34.01 Aligned_cols=82 Identities=11% Similarity=-0.047 Sum_probs=48.4
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh---------------cCCCCCCChHHHHHHHHHHh
Q 013299 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL---------------SGSEDPKCLPALLIASKICG 242 (446)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------------~~~~~P~~~~a~~~~~~~~~ 242 (446)
.+|+.+=.+.=...-++++.|..+|..|+..+++.+|..+|--.- + ...|.....+...+-+.+
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~-~~~~~e~dlfiaRaVL~y 197 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK-QDESHTAPLYCARAVLPY 197 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH-TSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHH
Confidence 344444444333456778888888888888888888877762110 1 222444444444444444
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 013299 243 EYPDLAEEGATFASRALE 260 (446)
Q Consensus 243 ~~~~~~~eA~~~~~~al~ 260 (446)
.-.++...|...++..++
T Consensus 198 L~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 198 LLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 456777777776555444
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.47 E-value=3.6 Score=44.78 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 013299 164 LDHLSFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (446)
Q Consensus 164 ~~~lg~~l~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~~~a~~~~~~ 239 (446)
|.-+-..+++.|+.++|.+.|++.-.. -.-+..+|+.|-..|.+.|+.++|...|++.......||-...-..+.+
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g 209 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 444555566666666666666432211 1224455666666666666666666666655533445543322222222
Q ss_pred HHhcCCCC-HHHHHHHHHHHHH
Q 013299 240 ICGEYPDL-AEEGATFASRALE 260 (446)
Q Consensus 240 ~~~~~~~~-~~eA~~~~~~al~ 260 (446)
+| + .|+ .++|...+++..+
T Consensus 210 lc-K-~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 210 MG-R-QDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HH-H-HTCCHHHHHHHHHHHHH
T ss_pred HH-h-CCCcHHHHHHHHHHHHH
Confidence 22 1 233 3455555555554
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.08 E-value=0.57 Score=46.95 Aligned_cols=142 Identities=10% Similarity=0.095 Sum_probs=57.7
Q ss_pred HHhcCCCCHHHHHHHHHHHH--HHcCC----CcchhhhHHHHHhhchhHhhhhhhhch--HHHHH-HHHHHHHHHHHHHH
Q 013299 240 ICGEYPDLAEEGATFASRAL--ECLGD----GCDQMESTANCLLGISLSAQSKVAITD--FDRAT-RQAKALQALVSAAR 310 (446)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al--~~~~~----~~~~~~~~a~~~lg~~~~~~~~~~~~~--~~~~~-~~~eAl~~~~~al~ 310 (446)
+++.+.+++++|..+....+ +.+.. .-+.+.+.+|++.+.++...++..... ..... -...=+..++.|.-
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 34444566666666665554 11211 112345778888887776554321100 00000 00112334444441
Q ss_pred hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 311 STNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 311 ~~~P~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
..|+.- +..++-+=..|...+.++.|.....++. .|.+. ...++.+|.++..+++|.+|..++..|+..-|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 223333 3344555677888999999999999985 44320 24566789999999999999999999998777
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.38 E-value=0.48 Score=47.46 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=59.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHH--------------HHHHH-HhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 013299 312 TNMRDLSILYRLSLEYAEQRKLNAAHY--------------YAKML-LKLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (446)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~~~~~~A~~--------------~~~~a-l~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ 376 (446)
+|+=++.+||+.+.++...|+..+... .++.| +..|++..+..|+.+-..|...+.|+.|...+.
T Consensus 176 lD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvs 255 (523)
T 4b4t_S 176 LNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFIS 255 (523)
T ss_dssp ---------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHh
Confidence 466678899999999988887766432 22222 223443324678888899999999999999999
Q ss_pred HHHhhcCCC--Cc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 377 AALDQTGKW--EQ---GELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 377 ~al~~~p~~--~~---~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
++. .|.. .+ ...+|..|.+..-+++|.+|.+++..++...|.
T Consensus 256 k~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 256 KLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 984 5521 12 455678899999999999999999999887664
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.03 E-value=3.3 Score=46.19 Aligned_cols=104 Identities=15% Similarity=0.064 Sum_probs=79.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hcCC--------------------C-CHHHHHHHHHHHH
Q 013299 306 VSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK-LEGG--------------------S-NLKGWLLMARILS 363 (446)
Q Consensus 306 ~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-l~P~--------------------~-~~~~~~~la~~~~ 363 (446)
+..+ ..-|.++-.-|-+|.++...|++++|..+|++|-. +.++ + -...|..+..++.
T Consensus 832 ~~l~-~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe 910 (1139)
T 4fhn_B 832 MQLI-GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF 910 (1139)
T ss_dssp HHHH-HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHH
T ss_pred HHHh-hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHH
Confidence 3345 56788998899999999999999999999998732 1110 0 0145667778888
Q ss_pred HccCHHHHHHHHHHHHhhcCCCCcH----HHHHHHHHHHHHhCCHHHHHHHH
Q 013299 364 AQKRYEDAETILNAALDQTGKWEQG----ELLRTKAKVQLVQGQLKGAVETY 411 (446)
Q Consensus 364 ~~g~~~eA~~~~~~al~~~p~~~~~----~~~~~~a~~~~~~g~~~eA~~~~ 411 (446)
..|-++.++.....|++..+. ++. ..|.++=+.....|+|++|-.+.
T Consensus 911 ~~~~~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 911 EESAYIDALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HTSCCHHHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HcCCHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 999999999999999987542 222 36777778889999999986555
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.76 E-value=17 Score=30.73 Aligned_cols=56 Identities=21% Similarity=0.190 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 159 ~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.|++..+.++ ...|+++.|.+..+.. ++..-|..||......|+++-|+.+|+++-
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3454444443 4569999998887765 678899999999999999999999999866
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.24 E-value=53 Score=36.39 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHccCHHHHHHHHH
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK----GWLLMARILSAQKRYEDAETILN 376 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~----~~~~la~~~~~~g~~~eA~~~~~ 376 (446)
..++.+..++.+.+.++.+++..+.|++..+.++.. .|..+=..+...|+|++|..++-
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 344444555555566666666666666544332111 34444444555566666655553
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.65 E-value=38 Score=33.13 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc--CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-h--cCCCCc--H
Q 013299 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLE--GGS---NLKGWLLMARILSAQKRYEDAETILNAALD-Q--TGKWEQ--G 388 (446)
Q Consensus 319 a~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~--~p~~~~--~ 388 (446)
....|+.++...|++.+|...+.....-- .++ -.+.+.....++...+++..|...+.++.. . .++... .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34577888888888888888888764321 111 024666677788888899988888888642 1 220011 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 013299 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 389 ~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~ 419 (446)
..+...|.++...++|.+|-.+|..+++...
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 3455678888888889888888888877543
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.20 E-value=13 Score=36.26 Aligned_cols=66 Identities=12% Similarity=-0.037 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 195 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~-~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
..++..+|..|.+.|++++|..+|.++......+++ ...++....+++. .+++..+..+++++-..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHh
Confidence 344555666666666666666666555421112222 2233333333333 34555666666665543
No 262
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.29 E-value=19 Score=39.11 Aligned_cols=97 Identities=14% Similarity=-0.011 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCCC---------------
Q 013299 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC--------------- 230 (446)
Q Consensus 166 ~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~~--------------- 230 (446)
.+...+...|.++-|. ..+..-|.++..-|.+|.++...|++++|..+|++|-. .+.++.
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 3666677788887654 35567777888889999999999999999999998763 222211
Q ss_pred -----h--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch
Q 013299 231 -----L--PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQ 268 (446)
Q Consensus 231 -----~--~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~ 268 (446)
. ..|..... .+++.+-++-++.+.+.||+...++++.
T Consensus 890 ~e~~~~~~~YY~hV~~-LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSK-KLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TTTCSHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccccchhHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 0 01122222 3455677777888888888765555443
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.95 E-value=69 Score=31.24 Aligned_cols=99 Identities=14% Similarity=-0.015 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCC----CCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHhcC-CCCCCChHH--
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLP----GII--NRKERYHILALCYYGAGEDLVALNLLRTLLSG-SEDPKCLPA-- 233 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~----~~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~~~P~~~~a-- 233 (446)
....|+.++...|++.+|...+..... ..+ .-.+.+..-..++...+++..|...+.++... ...|.++..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 345789999999999999988877642 111 12467777888899999999999999986310 123333332
Q ss_pred -HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013299 234 -LLIASKICGEYPDLAEEGATFASRALEC 261 (446)
Q Consensus 234 -~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (446)
+....+..+...+++.+|-.+|..+++.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2233334444568899999999988874
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.76 E-value=39 Score=27.45 Aligned_cols=81 Identities=14% Similarity=-0.011 Sum_probs=62.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChH
Q 013299 133 VPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDL 212 (446)
Q Consensus 133 ~~~~~~~eA~~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 212 (446)
.+.++...-+..+. +...+.+....--..+..+|+-++--..+...+.-+|-+++..+.+|.+|...|+..
T Consensus 72 s~C~NlKrVi~C~~---------~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 72 DKCQNLKSVVECGV---------INNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp GGCSCTHHHHHHHH---------HTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHH
T ss_pred HhhhcHHHHHHHHH---------HhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchh
Confidence 35566666666541 224455666666667888999999999999888888888999999999999999999
Q ss_pred HHHHHHHHHh
Q 013299 213 VALNLLRTLL 222 (446)
Q Consensus 213 eA~~~~~~al 222 (446)
+|-..+.+|-
T Consensus 143 ~a~eLl~~AC 152 (172)
T 1wy6_A 143 DATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999999988
No 265
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=65.77 E-value=13 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 013299 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (446)
Q Consensus 390 ~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~~ 422 (446)
.+-.++..+...|+|++|+++.+++..+..+-.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~yL~eAm 49 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATTYLSEAM 49 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777777776655433
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.03 E-value=30 Score=37.59 Aligned_cols=79 Identities=9% Similarity=-0.007 Sum_probs=62.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCC-CC----------------------cHHHHHHHHHHHHHCC
Q 013299 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-IN----------------------RKERYHILALCYYGAG 209 (446)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~-p~----------------------~~~~~~~lg~~~~~~g 209 (446)
.+.-.|.++..-+.+|.++...|++++|.++|++|-..- .+ ....|.+...++...+
T Consensus 832 L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~ 911 (950)
T 4gq2_M 832 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 911 (950)
T ss_dssp HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcC
Confidence 456678899889999999999999999999999885321 11 1236777888899999
Q ss_pred ChHHHHHHHHHHhcCCCCCCChH
Q 013299 210 EDLVALNLLRTLLSGSEDPKCLP 232 (446)
Q Consensus 210 ~~~eA~~~~~~al~~~~~P~~~~ 232 (446)
-++-++..-+.||. ...+++..
T Consensus 912 a~~~vi~fA~lAI~-~~~~dd~~ 933 (950)
T 4gq2_M 912 AYIDALEFSLLADA-SKETDDED 933 (950)
T ss_dssp CHHHHHHHHHHHHH-TCCSCCHH
T ss_pred CHHHHHHHHHHHHh-hcccCCcc
Confidence 99999999999995 45666665
No 267
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.85 E-value=17 Score=28.35 Aligned_cols=35 Identities=17% Similarity=0.025 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhh
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~ 44 (446)
+..+..+|+.....|+-++|++.|++-|+..++.+
T Consensus 22 AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl 56 (116)
T 2dl1_A 22 AFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGI 56 (116)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhc
Confidence 56677899999999999999999999999888765
No 268
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.49 E-value=16 Score=26.61 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHh
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~ 42 (446)
-+-.+..+|....+.|+|++|+..|.++|+.+-.
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999999999999987544
No 269
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=61.36 E-value=10 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHh
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~ 42 (446)
+-.+..+|+...+.|+|++|+..|.++|+.+-.
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 556778999999999999999999999987644
No 270
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=57.81 E-value=15 Score=26.74 Aligned_cols=31 Identities=23% Similarity=0.101 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHH
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIV 40 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~ 40 (446)
+..+..+|+-....|+|++|+..|..+++.+
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4556778899999999999999999999865
No 271
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=57.58 E-value=15 Score=28.81 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHh
Q 013299 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (446)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~ 42 (446)
-+..+..+|+-....|+|++|+..|..+|+.+-.
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3555778889999999999999999999987543
No 272
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=55.88 E-value=21 Score=26.77 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
.+|..+...|+++.|+.+|-+|+..-|+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 6888888999999999999999998887
No 273
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=55.74 E-value=16 Score=27.17 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 196 ERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 196 ~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
..+-..+..+...|+|++||.+.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345556777778888888887777766
No 274
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.70 E-value=17 Score=26.47 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 392 ~~~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
...|.-....|++++|+..|.++++.+-..
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 344555567899999999999999887653
No 275
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=55.22 E-value=19 Score=26.43 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHh
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~ 42 (446)
+-.+..+|+-....|+|++|+..|.++|+.+-.
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445667889999999999999999999987533
No 276
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=54.72 E-value=1.6e+02 Score=31.87 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=97.3
Q ss_pred HHCCChHHHHHHHHHHhcCCCC-CCCh----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--C---cchhhhHHHH
Q 013299 206 YGAGEDLVALNLLRTLLSGSED-PKCL----PALLIASKICGEYPDLAEEGATFASRALECLGD--G---CDQMESTANC 275 (446)
Q Consensus 206 ~~~g~~~eA~~~~~~al~~~~~-P~~~----~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~--~---~~~~~~~a~~ 275 (446)
...|+.++++..+.+-+ ... .+++ .+.+.+|.+. .|..++++.++...+..... . .+.....+-.
T Consensus 385 Ih~g~~~~gl~~L~~yL--~~~~s~~~~ik~GAllaLGli~---ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYL--PGSRASSRFIKGGSLYGLGLIY---AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HTSSCTTTHHHHHTTTS--TTSCCSCHHHHHHHHHHHHHHT---TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 35677788888888877 321 2332 2444444443 34445788888887764220 0 1122223444
Q ss_pred HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHH
Q 013299 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL--SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (446)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~~~P~~~--~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 353 (446)
-||.++.-.+ .+++++.+..++ .-+.... .+-+.||.++.-.|+-+-...++..+..-..+. ..
T Consensus 460 GLGla~~GS~------------~eev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~-vr 525 (963)
T 4ady_A 460 GIGLAAMGSA------------NIEVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN-IT 525 (963)
T ss_dssp HHHHHSTTCC------------CHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH-HH
T ss_pred HHHHHhcCCC------------CHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH-HH
Confidence 5555543322 367888888888 5332211 344677888888888776666666666432221 22
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH----HHHHHHHHHhCCHH
Q 013299 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL----RTKAKVQLVQGQLK 405 (446)
Q Consensus 354 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~----~~~a~~~~~~g~~~ 405 (446)
-...+|..+...|+.+.+...++.... .+ ++... +.+|..+...|+..
T Consensus 526 R~aalgLGll~~g~~e~~~~li~~L~~-~~---dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 526 RGLAVGLALINYGRQELADDLITKMLA-SD---ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HHHHHHHHHHTTTCGGGGHHHHHHHHH-CS---CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHhhhCCChHHHHHHHHHHHh-CC---CHHHHHHHHHHHHHHhcCCCCHH
Confidence 223344445567787766666655443 33 33333 34566667788853
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.68 E-value=1.5e+02 Score=27.70 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILN 376 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ 376 (446)
-..+|+.+=.+.= ...-.||+.+..+|..+.+.+++.+|..+|- + ..++.++. ++.++. +|+.
T Consensus 117 fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~---~a~mL~---------ew~~ 179 (336)
T 3lpz_A 117 FVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEV---LARMEY---------EWYK 179 (336)
T ss_dssp HHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHH---HHHHHH---------HHHH
T ss_pred HHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHH---HHHHHH---------HHHH
Confidence 3466777666533 4456799999999999999999999999982 2 11210122 222221 1221
Q ss_pred HHHhhcCCCCcHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHH
Q 013299 377 AALDQTGKWEQGELLRTKAK-VQLVQGQLKGAVETYTHLLAAL 418 (446)
Q Consensus 377 ~al~~~p~~~~~~~~~~~a~-~~~~~g~~~eA~~~~~~~l~l~ 418 (446)
+..| ...+.+..+|. .++..|+...|...+...++..
T Consensus 180 ---~~~~--~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 180 ---QDES--HTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp ---TSCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---hcCC--ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1235 56677777776 5588999999999888777655
No 278
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=51.61 E-value=42 Score=24.25 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=19.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 013299 394 KAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (446)
Q Consensus 394 ~a~~~~~~g~~~eA~~~~~~~l~l~~~~ 421 (446)
.|.-..+.|++++|+..|.++++.+-..
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3444456788888888888888877553
No 279
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=51.08 E-value=34 Score=34.14 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhhhcccC-------------hH--------HHHHHHHHHHHHHHhh---hcCCC-CCCCCccccHHH
Q 013299 6 ISLLLEAIFLKAKCLQGLGR-------------FK--------EAAQSCKVILDIVESS---FAEGF-PENLGADCKLQE 60 (446)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~-------------~e--------eA~~~~~~~l~~~~~~---~~~~~-~~~~~~~~~l~~ 60 (446)
-++++|+++.+|.+|+.+-+ .+ ...+.|..+++.++.. +|... ....+ ++
T Consensus 105 ~~~~aea~flRA~~yf~L~~~~G~VP~~~~~~~~~~~~~~~r~~~~ev~~~I~~dL~~A~~~Lp~~~~~~~~g---r~-- 179 (517)
T 3qnk_A 105 SRLTGEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKG---RA-- 179 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCCSSCCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHSCSCCCSTTTT---SC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceeeCCcCCccccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCcccC---cc--
Confidence 35779999999999987643 00 1245555555544332 23210 11111 11
Q ss_pred HHHHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 61 TLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 61 ~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
+-..|..+++.+|+-.+++++|+.+.++++..
T Consensus 180 tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 180 TKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12357778899999999999999999999975
No 280
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=50.24 E-value=59 Score=26.39 Aligned_cols=52 Identities=23% Similarity=0.114 Sum_probs=30.0
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 328 ~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
..+|+.|+=.+.++..+.-+|-+| +.+..+|..|.+.|+..+|-+.+.+|-+
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~-~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSA-SILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhccCCCCh-HHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 455666665556655544444443 6666666666666666666666666654
No 281
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=48.16 E-value=22 Score=26.44 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHHHHHHHHh
Q 013299 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (446)
Q Consensus 10 ~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~ 42 (446)
+-.+..+|+-....|+|++|+..|..+|+.+-.
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999987533
No 282
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=46.94 E-value=40 Score=33.33 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhhhcccC---------------------hHHHHHHHHHHHHHHHhhh---cCCCCCCCCccccHHHHH
Q 013299 7 SLLLEAIFLKAKCLQGLGR---------------------FKEAAQSCKVILDIVESSF---AEGFPENLGADCKLQETL 62 (446)
Q Consensus 7 ~~~~~~~~~~g~~~~~~g~---------------------~eeA~~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~~ 62 (446)
++++|+++.+|.+|+.+-+ .....+.|..+++.++... |.. ...+. + +-
T Consensus 107 ~~~aEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~--~~~gr---~--tk 179 (481)
T 3jq1_A 107 SVKGECLFIRGFYLFQLAKEFKDAPLRLTASQSPSTFPLAKSSQADIWAQAKEDLKTAASLLPIT--NKIGK---P--TQ 179 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSEECCCCCCSSCCCSCCCEECHHHHHHHHHHHHHHHHHHSCSS--CSTTS---C--CH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeeeeccCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC--CCCCc---c--cH
Confidence 5679999999999887643 0113455666655443322 221 11111 1 12
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
..|..+++.+|+..|++++|+...++++..
T Consensus 180 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 209 (481)
T 3jq1_A 180 GAAYAALGKIYVYEENWQEAINVLEPLTQN 209 (481)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 347778899999999999999999999864
No 283
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=46.53 E-value=36 Score=24.90 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 391 ~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
+...|.-....|++++|+..|..+++..-.
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344555556778888888888888877643
No 284
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.67 E-value=1.3e+02 Score=32.38 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=30.3
Q ss_pred HHhcCCHHHHHHHHHhhCCCC-CCc----HHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 171 FSIAGDLSSLATQIEELLPGI-INR----KERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 171 l~~~~~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
+...|+.++++..+.+-+... .++ ..+.+.+|.++...+ .+++..+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L 438 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNII 438 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHH
Confidence 344677777888877777532 122 345555666655444 46777777777
No 285
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=45.33 E-value=3.1e+02 Score=30.86 Aligned_cols=73 Identities=10% Similarity=0.113 Sum_probs=45.6
Q ss_pred HHHHHHHHh-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013299 337 HYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (446)
Q Consensus 337 ~~~~~~al~-l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l 415 (446)
.+.|.+.++ .++.+. .+...-.+=....|+|..|++++.+.++..| .-+.+-.++.++..+| |.++.+.+
T Consensus 1269 ~~~~~el~k~~d~~d~-k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~---~~~~~~~~~~~~~~l~-----w~h~~~~~ 1339 (1354)
T 3lxu_X 1269 NELYTEIIKFVDANDS-KAIQFALWHAYAHGHYGRMYKYVVKLIEEKR---TRDHFVELAAINGALG-----HEHIRTVI 1339 (1354)
T ss_dssp HHHHHHHTTSSCTTST-TTHHHHHHHHHHHTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHS-----CHHHHHHH
T ss_pred HHHHHHHHhhcccCCc-eeehhHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHcC-----CHHHHHHH
Confidence 344444444 345552 3333223333467999999999999999888 4567777777776665 55555554
Q ss_pred HHH
Q 013299 416 AAL 418 (446)
Q Consensus 416 ~l~ 418 (446)
+.|
T Consensus 1340 ~~~ 1342 (1354)
T 3lxu_X 1340 NRM 1342 (1354)
T ss_dssp HHH
T ss_pred Hhh
Confidence 444
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=43.97 E-value=61 Score=27.85 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013299 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (446)
Q Consensus 318 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 350 (446)
..+|++|.++...+++.+|...+..|+..-|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 456899999999999999999999999998876
No 287
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.81 E-value=54 Score=23.18 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013299 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (446)
Q Consensus 321 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 349 (446)
..+|..+...|++++|..+|-+|+..-|+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46677777777777777777777777666
No 288
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=42.06 E-value=43 Score=24.23 Aligned_cols=28 Identities=25% Similarity=0.093 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..|.-....|++++|+..|..++++.-.
T Consensus 18 ~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 18 QKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444445678888888888888887644
No 289
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=41.85 E-value=36 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 393 TKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 393 ~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
..|.-....|++++|+..|..+++..-.
T Consensus 20 ~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 20 KRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3444445577888888888888877654
No 290
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=40.94 E-value=2e+02 Score=25.75 Aligned_cols=178 Identities=13% Similarity=0.042 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCC---C-CcHHHHHHHHHHHHHC-CChHHHHHHHHHHhcC-CCCCCChHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGI---I-NRKERYHILALCYYGA-GEDLVALNLLRTLLSG-SEDPKCLPALL 235 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~---p-~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~-~~~P~~~~a~~ 235 (446)
+-...++.+..+.++|++.+++..+++..+ + =+.+-.+-|..+|-.. |....+...+...-+. ...++ .. ..
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~-~~-~~ 106 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNA-ED-AS 106 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HH-HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCc-HH-HH
Confidence 445567788888899999999999888765 3 3344555566665542 4444444444322100 11111 11 11
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
.+..-+-. .--+|=...+..++..++.. .....+.+++ ..|..|.....+.. ..++..-.+.|..+|++|.
T Consensus 107 ~~i~~yr~--kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~-g~~r~~~~e~a~~aY~~A~ 183 (260)
T 2npm_A 107 KMCGKYRS--KVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFST-GDSKQSSAEDALKAYKDAT 183 (260)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcC-chHHHHHHHHHHHHHHHHH
Confidence 11111100 01112223334444432111 0001122322 24555544443321 1233444567777787777
Q ss_pred Hh----hCCCCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013299 310 RS----TNMRDLSI---LYRLSLEYAE-QRKLNAAHYYAKMLLK 345 (446)
Q Consensus 310 ~~----~~P~~~~a---~~~lg~~~~~-~~~~~~A~~~~~~al~ 345 (446)
. +-|.||-- ..|.+..|++ +++.++|....++|+.
T Consensus 184 -~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 184 -VVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp -HHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred -HHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 46667632 2344444454 6888888877777765
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.92 E-value=3.1e+02 Score=27.94 Aligned_cols=230 Identities=11% Similarity=0.004 Sum_probs=122.4
Q ss_pred HhhcCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhcCCCCCC
Q 013299 153 ALKRIEWDPSILDHLSF---AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (446)
Q Consensus 153 ~l~~~p~~~~~~~~lg~---~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~~~P~ 229 (446)
.+..+|+.|..-..... .+.+.+++..-++.|.. .|.+.+....+...+...|+..+|....+++- .....
T Consensus 61 Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW--~~~~~ 134 (618)
T 1qsa_A 61 FVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW--LTGKS 134 (618)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH--SCSSC
T ss_pred HHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--hCCCC
Confidence 46778888876554443 34456777777775554 38899999999999999999988988888766 22222
Q ss_pred ChHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHcCCCcchhhhHHHHHhhchhHhhhhhhhchHHHHHHHHHHHHHHHH
Q 013299 230 CLPALLIASKICGEYPDLA--EEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVS 307 (446)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~--~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~ 307 (446)
.+..+-.+...... .|.. +.-..-++.++.. .+. ..+......+ .. . ..++..-..
T Consensus 135 ~p~~c~~l~~~~~~-~g~lt~~~~~~R~~~al~~--~~~----~~a~~l~~~l-~~-------------~-~~~~a~~~~ 192 (618)
T 1qsa_A 135 QPNACDKLFSVWRA-SGKQDPLAYLERIRLAMKA--GNT----GLVTVLAGQM-PA-------------D-YQTIASAII 192 (618)
T ss_dssp CCTHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHT--TCH----HHHHHHHHTC-CG-------------G-GHHHHHHHH
T ss_pred CcHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC--CCH----HHHHHHHHhC-CH-------------H-HHHHHHHHH
Confidence 33333222222221 1222 1223333333331 110 1111111111 00 0 001111111
Q ss_pred HHHhhCCCCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHHHccCHHHH
Q 013299 308 AARSTNMRDLS-------------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW---LLMARILSAQKRYEDA 371 (446)
Q Consensus 308 al~~~~P~~~~-------------a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~---~~la~~~~~~g~~~eA 371 (446)
++ ..+|.+.. ..+.++.......+.+.|...+.+.....+-++...+ ..++.-+...+...++
T Consensus 193 al-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~ 271 (618)
T 1qsa_A 193 SL-ANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQ 271 (618)
T ss_dssp HH-HHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHH
T ss_pred HH-HhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHH
Confidence 22 23333322 2233455555566899999999887543333321222 2333333344546788
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013299 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (446)
Q Consensus 372 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~ 414 (446)
..++.+.....+ ++....+..+. .+..|+.+.|...++++
T Consensus 272 ~~~~~~~~~~~~--~~~~~e~~~r~-Alr~~d~~~a~~~~~~l 311 (618)
T 1qsa_A 272 AKWRDDAIMRSQ--STSLIERRVRM-ALGTGDRRGLNTWLARL 311 (618)
T ss_dssp HHHHHHHHHTCC--CHHHHHHHHHH-HHHHTCHHHHHHHHHHS
T ss_pred HHHHHhccccCC--ChHHHHHHHHH-HHHCCCHHHHHHHHHHc
Confidence 888888776555 44444444444 45679999999988754
No 292
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=40.74 E-value=1.9e+02 Score=25.44 Aligned_cols=177 Identities=15% Similarity=0.087 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHH-CCChHHHHHHHHHHhcCCCC--CCChHHHHHH
Q 013299 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINR-KERYHILALCYYG-AGEDLVALNLLRTLLSGSED--PKCLPALLIA 237 (446)
Q Consensus 162 ~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~~~--P~~~~a~~~~ 237 (446)
+-...++.+..+.++|++.+++.++++..++.- .+-.+-|..+|-. .|....+...+...-+ +.. ++.. ...+
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieq-k~~~k~~~~--~~~~ 82 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQ-KEENKGGED--KLKM 82 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCHH--HHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhccCchH--HHHH
Confidence 344566777777888888888888888766543 3344445555443 2333444444432210 000 1111 1111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
..-+-. .--+|=...+..++..++.. .....+.+++ ..|..|.....+.. ..++..-.+.|..+|++|. .
T Consensus 83 i~~yr~--kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~-g~~r~~~~e~a~~aY~~A~-~ 158 (234)
T 2br9_A 83 IREYRQ--MVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFAT-GNDRKEAAENSLVAYKAAS-D 158 (234)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHH--HHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcC-chHHHHHHHHHHHHHHHHH-H
Confidence 111000 00112222333344332111 0001122222 24555544433221 1123344466777777766 4
Q ss_pred -----hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013299 312 -----TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK 345 (446)
Q Consensus 312 -----~~P~~~~a~---~~lg~~~~~-~~~~~~A~~~~~~al~ 345 (446)
+.|.||--+ .|.+..|++ .++.++|....++|+.
T Consensus 159 iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 159 IAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467776322 344444444 6788887777777654
No 293
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=40.65 E-value=2.1e+02 Score=32.20 Aligned_cols=66 Identities=11% Similarity=0.014 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 013299 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (446)
Q Consensus 299 ~eAl~~~~~al~~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g 366 (446)
++-.+.|.+.++..+++|..+......-....++|..|++++.+.++-.|. -+.+..++.++..+|
T Consensus 1266 ~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~--~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRT--RDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHcC
Confidence 334455666664567888766654444445689999999999999998885 377777777766554
No 294
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=40.26 E-value=71 Score=31.18 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhhcccCh------------------------------HHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 013299 6 ISLLLEAIFLKAKCLQGLGRF------------------------------KEAAQSCKVILDIVESSFAEGFPENLGAD 55 (446)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~~------------------------------eeA~~~~~~~l~~~~~~~~~~~~~~~~~~ 55 (446)
-++++|+++.+|.+|+.+-++ ....+.|.++++.++...+. -|.....
T Consensus 107 ~~~~gEa~flRA~~yf~L~~~fG~~y~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~-L~~~~~~- 184 (454)
T 3myv_A 107 NALKGETMAVIALCQFDLTRCFGYPYTKDKGASLGAPLIDHLVGTYENPPRSTVAQAYDFIIETLEEAVTL-MSEEKNN- 184 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCHHHHTTCSEEEECCCSCCCTTCCCCEEEHHHHHHHHHHHHHHHHHH-CCCSCCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCccccccCCCceeeEeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-ccccccC-
Confidence 467799999999988875210 01345566665544333211 1111000
Q ss_pred ccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 56 CKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 56 ~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
.++ +-..|..+++.+|+-.|++++|+...+++|..
T Consensus 185 gr~--tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 185 GRM--NKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp TSC--CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cee--cHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 011 12357778899999999999999999999864
No 295
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=39.25 E-value=2.1e+02 Score=25.58 Aligned_cols=179 Identities=12% Similarity=0.072 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCC--CC-cHHHHHHHHHHHHH-CCChHHHHHHHHHHhcC-CCCCCChHHHH
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGI--IN-RKERYHILALCYYG-AGEDLVALNLLRTLLSG-SEDPKCLPALL 235 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~-~~~P~~~~a~~ 235 (446)
-+-...++.+..+.++|++.+++.++++..+ +. +.+-.+-|..+|-. .|....+...+...-+. ...++.. ..
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~--~~ 85 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEE--HV 85 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH--HH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHH--HH
Confidence 3445567778888889999998888888766 33 34445555655543 24444444444332200 0111111 11
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 236 IASKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
.+..-+.. .--+|=...+..++..+... .....+.+++ ..|..|.....+... .++..-.+.|..+|++|.
T Consensus 86 ~~i~~yr~--kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g-~~r~~~~e~a~~aY~~A~ 162 (260)
T 1o9d_A 86 NSIREYRS--KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTG-AERKEAAESTLTAYKAAQ 162 (260)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCc-hHHHHHHHHHHHHHHHHH
Confidence 11111100 01122223334444432111 0011122322 245555554443222 133344567777777776
Q ss_pred Hh-----hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013299 310 RS-----TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK 345 (446)
Q Consensus 310 ~~-----~~P~~~~a~---~~lg~~~~~-~~~~~~A~~~~~~al~ 345 (446)
. +-|.||--+ .|.+..|++ +++.++|....++|+.
T Consensus 163 -~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 163 -DIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp -HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred -HHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4 467777422 344444444 6788888877777653
No 296
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=39.08 E-value=76 Score=31.00 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.3
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
..|..+++.+|+-.|++++|+...+++|..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 357778899999999999999999999864
No 297
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=37.37 E-value=1.1e+02 Score=21.61 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=20.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 358 MARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 358 la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+|..+...|++++|+..+-+|+...|
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 56666777888888888888888877
No 298
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=37.25 E-value=53 Score=25.55 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=11.6
Q ss_pred HHhCCHHHHHHHHHHHHHHHh
Q 013299 399 LVQGQLKGAVETYTHLLAALQ 419 (446)
Q Consensus 399 ~~~g~~~eA~~~~~~~l~l~~ 419 (446)
...|++++|+..|..+++++-
T Consensus 29 D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHH
Confidence 344555666666665555543
No 299
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.88 E-value=68 Score=27.55 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 352 LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 352 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
+...+.+|.+++.+++|.+|...+..|+..-|
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 36778899999999999999999999999877
No 300
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=34.72 E-value=1.1e+02 Score=30.66 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhhcccC-------------hHH--------HHHHHHHHHHHHHhh---hcC--CCC-CCCCccccH
Q 013299 6 ISLLLEAIFLKAKCLQGLGR-------------FKE--------AAQSCKVILDIVESS---FAE--GFP-ENLGADCKL 58 (446)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~-------------~ee--------A~~~~~~~l~~~~~~---~~~--~~~-~~~~~~~~l 58 (446)
-++.+|+++.+|.+|+.+-+ .++ ..+.+..+++.++.. +|. ..+ ...+. +
T Consensus 119 ~~~~aEa~flRA~~Yf~L~~~yG~VPl~~~~~~~~~~~~~~r~~~~ev~~~I~~DL~~A~~~Lp~~~~~~~~~~gr---~ 195 (528)
T 3i4g_A 119 TRMIAEARFLRATQYFYLASYFKNVPLVENVLTGEEANNVTKTSQADILKWCVTEFTAAAADLPRFSAIPAGEAGR---A 195 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBCCCCSCCCHHHHTTCCCBCHHHHHHHHHHHHHHHHHHSCCGGGCCGGGTTS---C
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCccccCCcccCCc---C
Confidence 35779999999999988753 111 234555555544332 231 000 01110 1
Q ss_pred HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 59 QETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 59 ~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
+-..|..+++.+|+-.+++++|+.+.++++..
T Consensus 196 --tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 196 --CKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp --CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 12357778899999999999999999999864
No 301
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=33.80 E-value=2.5e+02 Score=24.73 Aligned_cols=176 Identities=16% Similarity=0.083 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHHH-CCChHHHHHHHHHHhc---CCCCCCChHHH-
Q 013299 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK-ERYHILALCYYG-AGEDLVALNLLRTLLS---GSEDPKCLPAL- 234 (446)
Q Consensus 161 ~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~-~g~~~eA~~~~~~al~---~~~~P~~~~a~- 234 (446)
.+-...++.+..+.++|++.+++.++++..++.-. +-.+-|..+|-. .|....+...+....+ .+-+++.....
T Consensus 8 re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i~ 87 (236)
T 3iqu_A 8 RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVR 87 (236)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 34455667777788888888888888777665433 334445555433 2444444444432110 01122222111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHH
Q 013299 235 LIASKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (446)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~a 308 (446)
-+...+ -.|=...+..++..++.. .....+.+++ ..|..|...+.+...+ ++..-.+.|..+|++|
T Consensus 88 ~yr~ki-------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~-~r~~~~e~a~~aY~~A 159 (236)
T 3iqu_A 88 EYREKV-------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGD-DKKRIIDSARSAYQEA 159 (236)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHH
Confidence 000111 112233344444433221 0111123322 2455555444333221 2334456777777776
Q ss_pred HHh-----hCCCCHHHH---HHHHHHHH-HcCCHHHHHHHHHHHHh
Q 013299 309 ARS-----TNMRDLSIL---YRLSLEYA-EQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 309 l~~-----~~P~~~~a~---~~lg~~~~-~~~~~~~A~~~~~~al~ 345 (446)
. . +.|.||--+ .|.+..|+ ..++.++|....++|+.
T Consensus 160 ~-~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 160 M-DISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp H-HHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred H-HHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 4 567777422 34444444 46788888777776653
No 302
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=33.31 E-value=1.2e+02 Score=31.35 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=27.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013299 355 WLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 404 (446)
....|.-.+..|+|.-|...++.++..+| +|..+...++.++.++|.-
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p--~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEP--DNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHh
Confidence 33444555555666666666666666666 5666666666666555533
No 303
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=32.95 E-value=1.3e+02 Score=29.30 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCC
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLP 92 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~ 92 (446)
..|..+++.+|+-.|++++|+...++++..
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 357778899999999999999999999975
No 304
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.86 E-value=36 Score=24.42 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLK 345 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~ 345 (446)
.+|.-++..|+|+.|+.+|+.++.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 456666667777777777777765
No 305
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.45 E-value=2.1e+02 Score=23.52 Aligned_cols=58 Identities=14% Similarity=-0.008 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCc---HHH---HHH-H--HHHHHHCCChHHHHHHHHHHh
Q 013299 165 DHLSFAFSIAGDLSSLATQIEELLPGIINR---KER---YHI-L--ALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 165 ~~lg~~l~~~~~~~~A~~~~~~al~~~p~~---~~~---~~~-l--g~~~~~~g~~~eA~~~~~~al 222 (446)
+.-|..+...|+|-+|.++++.+-...++. ... ..+ + |....+.|+..-|...+.+++
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345667777899999999999998776554 222 222 2 223455688888888888876
No 306
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=31.89 E-value=1.1e+02 Score=20.30 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=14.2
Q ss_pred cCHHHHHHHHHHHHhhcCCCC-cHHHHHHHHHHHHHhCCHHHHH
Q 013299 366 KRYEDAETILNAALDQTGKWE-QGELLRTKAKVQLVQGQLKGAV 408 (446)
Q Consensus 366 g~~~eA~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~eA~ 408 (446)
.+.+||..+-+ -+...+ + .-.+-..+...+..+|+|++|+
T Consensus 20 HcH~EA~tIA~-~L~~~~--~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 20 HCHQEAASIAD-WLAQEE--CMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp TCHHHHHHHHH-HHHTSS--TTHHHHHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHH-HHHhCC--CHHHHHHHHHHHHHHccchHhHhh
Confidence 34555544333 233333 2 2223344455556666666554
No 307
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.32 E-value=1e+02 Score=30.22 Aligned_cols=85 Identities=9% Similarity=-0.076 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhhcccC---------------------hHHHHHHHHHHHHHHHhh---hcCCCCCCCC-------cc
Q 013299 7 SLLLEAIFLKAKCLQGLGR---------------------FKEAAQSCKVILDIVESS---FAEGFPENLG-------AD 55 (446)
Q Consensus 7 ~~~~~~~~~~g~~~~~~g~---------------------~eeA~~~~~~~l~~~~~~---~~~~~~~~~~-------~~ 55 (446)
++.+|+++.+|.+|+.+=+ .....+.|..+++.++.. +|...+.... ..
T Consensus 109 ~~~gEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~ 188 (478)
T 3hdx_A 109 YDIAQVRALRAFAYFYMVRIWGDVPLVTYSYDNGTFPSMPRTDAQTVLSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQ 188 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSBCCCCSCCCTTCCCCCCCBCHHHHHHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeeeeccCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhCcccccCCccccccccccc
Confidence 5679999999999987643 011345555555444332 2321111100 00
Q ss_pred cc-HHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHhC
Q 013299 56 CK-LQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (446)
Q Consensus 56 ~~-l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~ 91 (446)
+. ...+-..|..+++.+|+-.|++++|+...+++|.
T Consensus 189 ~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 225 (478)
T 3hdx_A 189 WQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIID 225 (478)
T ss_dssp GTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 00 0111235777889999999999999999999985
No 308
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=29.78 E-value=90 Score=30.58 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcccC-------------------------------------hHHHHHHHHHHHHHHHhhhcCCCC
Q 013299 7 SLLLEAIFLKAKCLQGLGR-------------------------------------FKEAAQSCKVILDIVESSFAEGFP 49 (446)
Q Consensus 7 ~~~~~~~~~~g~~~~~~g~-------------------------------------~eeA~~~~~~~l~~~~~~~~~~~~ 49 (446)
++++|+++.+|.+|+.+-+ |+.-+..++.++...+.....+.+
T Consensus 120 ~~~gEa~flRA~~yf~L~~~fG~~y~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~L~~~~~~gr~ 199 (477)
T 3mcx_A 120 RIKSEALVMRGLSLFNLTRLFGMPYTNDKGASLGVPIETSPSDPTHKPSRSTVAQCYEQVVSDMSNALSGLRQETSNGYI 199 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCGGGTTTCSBCCCCCCSSCCTTCCCCCCBHHHHHHHHHHHHHHHGGGSCSSCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCccccccCCceeeecccCcccCCCCCCHHHHHHHHHHHHHHHHHhCcccccCCcC
Q ss_pred CCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 50 ENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 50 ~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
. -..|..+++.+|+-.|++++|+.+.+++|
T Consensus 200 t-----------k~aa~allarvyL~~~~~~~A~~~a~~vi 229 (477)
T 3mcx_A 200 N-----------YWAAQALLSRVYLNMGEYQKAYDAATDVI 229 (477)
T ss_dssp C-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred c-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
No 309
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=28.64 E-value=92 Score=23.23 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013299 357 LMARILSAQKRYEDAETILNAALDQTG 383 (446)
Q Consensus 357 ~la~~~~~~g~~~eA~~~~~~al~~~p 383 (446)
.+|..+...|+++.|+..+-+|+...|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 578888888999999999999998888
No 310
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=28.54 E-value=1.4 Score=43.87 Aligned_cols=188 Identities=13% Similarity=-0.021 Sum_probs=101.4
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHh
Q 013299 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (446)
Q Consensus 11 ~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al 90 (446)
+.|...|.++...|+..+||++|-++ ++|.+.. .+. .+..+.|++++=+.+++-+-
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA----------~Dps~y~----------eVi----~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA----------DDPSSYM----------EVV----QAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC----------SCCCSSS----------HHH----HHTTTSSCCTTHHHHHHTTS
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC----------CChHHHH----------HHH----HHHHhCCCHHHHHHHHHHHH
Confidence 35677899999999999999886542 2454432 111 12346777777777777666
Q ss_pred CC--CCCCChHHHHHH--------------------HHHHHHHHhhhcCCCCCCc------cccccCccccCCCcHHHHH
Q 013299 91 LP--CWNLDAETTAKL--------------------QKEFAIFLLYCGGETCPPN------LRSQMGSSFVPRNNIEEAI 142 (446)
Q Consensus 91 ~~--~~~~~~~~~~~l--------------------~~~~a~~ll~~~~~~~~~~------~~~~~~~~~~~~~~~~eA~ 142 (446)
+. .+..|++-.-.+ ....|..++..+.-++... ....+...++..+++++|+
T Consensus 111 k~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 111 KKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp TTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSST
T ss_pred HHhcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 55 122222110000 0111111111111111100 0123456677888888887
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHh
Q 013299 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (446)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 222 (446)
.. .+--+++.+|-....+....+++.-|.-|--..+- .|+..+ .+...|...|-++|=+..++.++
T Consensus 191 da----------ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~---elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 191 DG----------ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELE---ELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp TT----------TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCS---GGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HH----------HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHH---HHHHHHHhCCCHHHHHHHHHHHh
Confidence 53 23356777787777777777777666555443332 222221 12334556677777777777777
Q ss_pred cCCCCCCChHHHHHHH
Q 013299 223 SGSEDPKCLPALLIAS 238 (446)
Q Consensus 223 ~~~~~P~~~~a~~~~~ 238 (446)
.+.--+...+.-+|
T Consensus 257 --glErAHmGmFTELa 270 (624)
T 3lvg_A 257 --GLERAHMGMFTELA 270 (624)
T ss_dssp --TSTTCCHHHHHHHH
T ss_pred --CCCchhHHHHHHHH
Confidence 66666665555444
No 311
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.71 E-value=1.2e+02 Score=29.64 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcC--CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-cC
Q 013299 322 RLSLEYAEQRKLNAAHYYAKMLLKLEG--GS-------NLKGWLLMARILSAQKRYEDAETILNAALDQ-TG 383 (446)
Q Consensus 322 ~lg~~~~~~~~~~~A~~~~~~al~l~P--~~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p 383 (446)
.|-.+|.+.|+..-+...++..-.-.+ .. -+...+.+|.+++.+++|.+|...+..|+.. -|
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 444566667777776666654322211 10 1245666777777777777777777777766 44
No 312
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=27.11 E-value=1.1e+02 Score=31.44 Aligned_cols=52 Identities=12% Similarity=-0.087 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHH
Q 013299 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYE 369 (446)
Q Consensus 317 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~ 369 (446)
.+.....|......|+|.-|.+..+.++..+|++ ..+...++.+|.++|.-.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~-~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDN-RAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhc
Confidence 4455667777788999999999999999999999 599999999888877544
No 313
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.21 E-value=67 Score=23.00 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=21.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013299 355 WLLMARILSAQKRYEDAETILNAALDQ 381 (446)
Q Consensus 355 ~~~la~~~~~~g~~~eA~~~~~~al~~ 381 (446)
...+|.=+...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345677778889999999999988854
No 314
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=24.29 E-value=3.7e+02 Score=23.76 Aligned_cols=175 Identities=18% Similarity=0.150 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHHH-CCChHHHHHHHHHHhc---CCCCCCChHHHHHH
Q 013299 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRK-ERYHILALCYYG-AGEDLVALNLLRTLLS---GSEDPKCLPALLIA 237 (446)
Q Consensus 163 ~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~-~g~~~eA~~~~~~al~---~~~~P~~~~a~~~~ 237 (446)
-...++.+..+.++|++.+++.++++..++.-. +-.+-|..+|-. .|....+...+....+ ..-+.......
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i--- 82 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMV--- 82 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHH---
Confidence 344567777778888888888888877765443 334445555433 2444444444422210 01112221111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchh--hhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDG----CDQM--ESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~--~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al 309 (446)
.-+.. .=-.|=...+..++..++.. .... .+.+++ ..|..|.....+.. ..++..-.+.|..+|++|.
T Consensus 83 -~~yr~--kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~-g~~r~~~~~~a~~aY~~A~ 158 (248)
T 3uzd_A 83 -RAYRE--KIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVAT-GEKRATVVESSEKAYSEAH 158 (248)
T ss_dssp -HHHHH--HHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHH--HHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcC-chHHHHHHHHHHHHHHHHH
Confidence 00000 00112222333333332110 0001 123322 24555554443322 1233444567777777765
Q ss_pred Hh-----hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013299 310 RS-----TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK 345 (446)
Q Consensus 310 ~~-----~~P~~~~a~---~~lg~~~~~-~~~~~~A~~~~~~al~ 345 (446)
. +.|.||--+ .|.+..|++ +++.++|....++|+.
T Consensus 159 -~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 159 -EISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp -HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred -HHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 567777422 344444444 6788887777766654
No 315
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=24.25 E-value=2.3e+02 Score=26.79 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013299 336 AHYYAKMLLKLE-----GGSNLKGWLLMARILSAQKRYEDAETILNAALD 380 (446)
Q Consensus 336 A~~~~~~al~l~-----P~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 380 (446)
++..|.+|+... -.+ .--+..+|-.+.+.+++.||+.++-.|-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~H-vYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHH-IYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC-ccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 666677776643 234 36677788888888889888888876654
No 316
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.20 E-value=69 Score=26.19 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Q 013299 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIF 111 (446)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~l~~~~a~~ 111 (446)
+.-.+..+..+...|++.+|..+|+..++. +..| ...++.....+
T Consensus 101 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~--~A~P--~~rL~~~~~~F 145 (152)
T 4a1g_A 101 SPLYIAWAGHLEAQGELQHASAVLQRGIQN--QAEP--REFLQQQYRLF 145 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcc--HHHHHHHHHHH
Confidence 334445567889999999999999999987 2233 34555555444
No 317
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=24.17 E-value=63 Score=23.77 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhcc---cChHHHHHHHHHHHHHHHhhh
Q 013299 10 LEAIFLKAKCLQGL---GRFKEAAQSCKVILDIVESSF 44 (446)
Q Consensus 10 ~~~~~~~g~~~~~~---g~~eeA~~~~~~~l~~~~~~~ 44 (446)
+..+.++|+..... |+-++|++.|++-|+..++-+
T Consensus 16 AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi 53 (89)
T 3eab_A 16 AFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGI 53 (89)
T ss_dssp HHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhc
Confidence 45567789999998 999999999999988876644
No 318
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=24.06 E-value=1.5e+02 Score=23.83 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHhhhcCCCCC
Q 013299 3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPE 50 (446)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~g~~eeA~~~~~~~l~~~~~~~~~~~~~ 50 (446)
|+..=-.+..++..|..|...|+.+.|.-.|-+++.++-..+|. +|+
T Consensus 33 l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~Ipk-Hpd 79 (146)
T 2xze_A 33 PRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPK-HRD 79 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGG-STT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHccc-Ccc
Confidence 33333347778899999999999999999999988877444444 344
No 319
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.43 E-value=97 Score=24.02 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=27.0
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 013299 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (446)
Q Consensus 365 ~g~~~eA~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~eA~~~~~~~l~l~~~ 420 (446)
...|++|..++.+||..+. .|+.+.|++.|++.+.-.-.
T Consensus 16 k~~h~~AF~~Is~AL~~DE-----------------~g~k~~Al~lYk~GI~eLe~ 54 (116)
T 2dl1_A 16 REAYKKAFLFVNKGLNTDE-----------------LGQKEEAKNYYKQGIGHLLR 54 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------------HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhh-----------------cCCHHHHHHHHHHHHHHHHH
Confidence 3567777778877777653 37777888887777665543
No 320
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.25 E-value=1.4e+02 Score=29.60 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhhhcccC----------h-------H-----HHHHHHHHHHHHHHhhh---cCCCCCC-CCccccHHH
Q 013299 7 SLLLEAIFLKAKCLQGLGR----------F-------K-----EAAQSCKVILDIVESSF---AEGFPEN-LGADCKLQE 60 (446)
Q Consensus 7 ~~~~~~~~~~g~~~~~~g~----------~-------e-----eA~~~~~~~l~~~~~~~---~~~~~~~-~~~~~~l~~ 60 (446)
++++|+++.+|.+|+.+=+ . . ...+.|..+++.++... |...+.. .+.. ....
T Consensus 115 ~~~aEa~flRA~~Yf~L~~~~G~VPl~~~~~~~~~~~~~~~r~~~~ev~~~I~~DL~~A~~~Lp~~~~~~~~g~~-~~r~ 193 (535)
T 3ihv_A 115 LYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATYVQSAPEKVYEYIEDDLLYACDILPYATDDQYRESN-DYRF 193 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCCCSHHHHTSCGGGCCCCCHHHHHHHHHHHHHHHHHHCCCTTTCCSSSCC-TTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceeeCCcCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCccccccccccc-ccCc
Confidence 5679999999999987643 0 0 12456666665544332 3221110 0100 0001
Q ss_pred HHHHHHHHhHHHHHHh--------CChHHHHHHHHHHhCC
Q 013299 61 TLNRAVELLPELWKLA--------DAPRETIMSYRRALLP 92 (446)
Q Consensus 61 ~~~~a~~~l~~~~~~~--------g~~~eA~~~y~~al~~ 92 (446)
+-..|..+++.+|+-. +++++|+.+.+++|..
T Consensus 194 tk~aA~allarvyL~~a~~~~~~~~~~~~A~~~a~~vi~~ 233 (535)
T 3ihv_A 194 SKGAALGLLTKVYATWAGYPVKDESKWEAAAKTARILVES 233 (535)
T ss_dssp CHHHHHHHHHHHHHHHHSTTTCCTTHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHccCCcccCHHHHHHHHHHHHHHHhc
Confidence 1235677788888875 5799999999999975
No 321
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.85 E-value=4.3e+02 Score=23.57 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHHH-CCChHHHHHHHHHHhcCCCCCCChHHHHHH
Q 013299 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK-ERYHILALCYYG-AGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (446)
Q Consensus 160 ~~~~~~~lg~~l~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~~~P~~~~a~~~~ 237 (446)
+.+-...++.+..+.++|++.+++.++++..++.-. +-.+-|..+|-. .|....+...+....+.....++.. ....
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~-~~~~ 108 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGED-KLKM 108 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHH-HHHH
Confidence 455666778888888999999988888888766543 344555555543 2444455554432220000111211 1111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHH--HhhchhHhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 013299 238 SKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (446)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eAl~~~~~al~~ 311 (446)
..-+.. .=-.|=...+..++..++.. .....+.+++ ..|..|...+.+.. ..++..-.+.|..+|++|. .
T Consensus 109 i~~yr~--kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~-g~~rk~~~e~a~~aY~~A~-~ 184 (261)
T 3ubw_A 109 IREYRQ--MVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFAT-GNDRKEAAENSLVAYKAAS-D 184 (261)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcC-chHHHHHHHHHHHHHHHHH-H
Confidence 111100 00112233344444432111 1111233333 24665554443321 1133344567777777765 4
Q ss_pred -----hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013299 312 -----TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK 345 (446)
Q Consensus 312 -----~~P~~~~a~---~~lg~~~~~-~~~~~~A~~~~~~al~ 345 (446)
+.|.+|--+ .|.+..|++ +++.++|....++|+.
T Consensus 185 iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 185 IAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777422 344445554 6788888777776654
No 322
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.41 E-value=1.4e+02 Score=24.34 Aligned_cols=44 Identities=20% Similarity=-0.035 Sum_probs=31.2
Q ss_pred HHHHHHhhC--CCCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHhc
Q 013299 180 LATQIEELL--PGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (446)
Q Consensus 180 A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 223 (446)
+.+.|.-+. .+.-..+..|...|..+...|++.+|..+|+.+|+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444443 44556677777888888888888888888888883
No 323
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=20.22 E-value=1e+02 Score=25.39 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 013299 297 RQAKALQALVSAARSTNMRD--LSILYRLSLEYAEQRKLN-AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (446)
Q Consensus 297 ~~~eAl~~~~~al~~~~P~~--~~a~~~lg~~~~~~~~~~-~A~~~~~~al~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 373 (446)
+|.+.+..++ ..+|.. ..+.|-||..|.....+. +.....-..+.+..+ +- +.+=||+.-+|++++|+.
T Consensus 23 dYs~VI~~L~----~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---e~-yL~YWIyiGRg~~~eAlD 94 (161)
T 2ynq_A 23 KYSDVITTLE----DYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---EQ-YMLYWIYIGRSQSEEALE 94 (161)
T ss_dssp CHHHHHHHHT----TSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---HH-HHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHh----cCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---HH-HHHHHHHHcCCchHHHHH
Confidence 3455555544 444543 467899999999876544 455555555555433 11 223355566699999998
Q ss_pred HHHHH
Q 013299 374 ILNAA 378 (446)
Q Consensus 374 ~~~~a 378 (446)
+-.+.
T Consensus 95 iA~~L 99 (161)
T 2ynq_A 95 LARTI 99 (161)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76543
Done!