Query 013300
Match_columns 446
No_of_seqs 197 out of 1362
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 07:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 1.9E-33 6.5E-38 245.5 9.2 114 2-116 15-128 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 6E-33 2.1E-37 234.2 10.2 105 11-116 1-105 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.1E-32 3.7E-37 234.5 9.2 104 14-118 1-104 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 2.5E-32 8.5E-37 239.8 10.5 110 13-123 1-110 (131)
5 3osg_A MYB21; transcription-DN 100.0 6.3E-32 2.2E-36 236.1 10.6 106 8-115 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 3.1E-31 1.1E-35 239.0 8.2 113 3-116 47-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 7E-31 2.4E-35 236.7 2.0 122 12-134 4-126 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.8 3.2E-22 1.1E-26 174.5 1.4 95 40-135 1-96 (128)
9 2dim_A Cell division cycle 5-l 99.8 3.8E-21 1.3E-25 152.3 2.5 67 8-75 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 6.5E-18 2.2E-22 162.7 7.4 105 10-115 4-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1.9E-17 6.4E-22 133.6 5.5 58 54-112 10-67 (73)
12 2juh_A Telomere binding protei 99.7 1.4E-17 4.9E-22 146.1 2.4 83 8-91 11-103 (121)
13 2cu7_A KIAA1915 protein; nucle 99.6 2E-16 6.7E-21 126.0 7.5 65 61-126 3-67 (72)
14 2din_A Cell division cycle 5-l 99.6 2.2E-16 7.5E-21 123.5 7.2 60 60-120 2-61 (66)
15 2d9a_A B-MYB, MYB-related prot 99.6 8.2E-17 2.8E-21 123.6 3.8 57 9-66 3-59 (60)
16 2roh_A RTBP1, telomere binding 99.6 1.1E-16 3.8E-21 140.6 5.1 79 9-88 26-114 (122)
17 1gvd_A MYB proto-oncogene prot 99.6 8.9E-17 3E-21 120.2 3.6 52 12-64 1-52 (52)
18 2dim_A Cell division cycle 5-l 99.6 1.9E-16 6.6E-21 125.2 5.7 65 62-126 4-69 (70)
19 1guu_A C-MYB, MYB proto-oncoge 99.6 1.5E-16 5E-21 118.8 2.8 52 12-64 1-52 (52)
20 1ity_A TRF1; helix-turn-helix, 99.6 3.3E-16 1.1E-20 123.6 3.2 65 7-71 3-68 (69)
21 2d9a_A B-MYB, MYB-related prot 99.6 8.8E-16 3E-20 117.9 4.8 55 62-116 3-58 (60)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 2.9E-15 9.9E-20 111.8 6.1 50 65-114 1-51 (52)
23 1ity_A TRF1; helix-turn-helix, 99.6 5.3E-15 1.8E-19 116.7 6.8 60 61-120 4-66 (69)
24 1gvd_A MYB proto-oncogene prot 99.5 5.4E-15 1.8E-19 110.4 5.9 50 65-114 1-51 (52)
25 1x41_A Transcriptional adaptor 99.5 2.2E-15 7.4E-20 116.2 2.9 55 9-64 3-57 (60)
26 1w0t_A Telomeric repeat bindin 99.5 9.8E-15 3.4E-19 109.7 6.4 49 66-114 1-52 (53)
27 2din_A Cell division cycle 5-l 99.5 1.2E-15 3.9E-20 119.4 0.2 59 7-68 2-60 (66)
28 3sjm_A Telomeric repeat-bindin 99.5 3.1E-15 1.1E-19 117.4 2.5 56 11-66 8-64 (64)
29 1x41_A Transcriptional adaptor 99.5 1.7E-14 5.9E-19 111.1 6.5 52 62-113 3-55 (60)
30 3sjm_A Telomeric repeat-bindin 99.5 3.7E-14 1.3E-18 111.3 6.2 51 65-115 9-62 (64)
31 2yum_A ZZZ3 protein, zinc fing 99.5 5.5E-15 1.9E-19 118.1 1.3 60 9-69 3-67 (75)
32 2yum_A ZZZ3 protein, zinc fing 99.5 2.9E-14 9.9E-19 113.9 5.3 58 62-119 3-66 (75)
33 1w0t_A Telomeric repeat bindin 99.5 1.6E-14 5.6E-19 108.5 2.5 50 13-62 1-51 (53)
34 2elk_A SPCC24B10.08C protein; 99.5 2E-14 6.9E-19 110.3 3.0 52 10-61 5-56 (58)
35 2elk_A SPCC24B10.08C protein; 99.4 1.1E-13 3.6E-18 106.3 6.7 50 63-112 5-56 (58)
36 2llk_A Cyclin-D-binding MYB-li 99.4 2.7E-14 9.1E-19 115.2 3.2 62 2-67 11-72 (73)
37 3osg_A MYB21; transcription-DN 99.4 2.2E-14 7.4E-19 125.1 2.0 75 62-136 6-80 (126)
38 3zqc_A MYB3; transcription-DNA 99.4 2.2E-14 7.4E-19 125.7 1.7 88 3-96 43-130 (131)
39 1gv2_A C-MYB, MYB proto-oncoge 99.4 2.2E-14 7.5E-19 120.7 1.1 71 64-134 1-72 (105)
40 2cu7_A KIAA1915 protein; nucle 99.4 2.6E-14 9E-19 113.7 1.4 59 7-67 2-60 (72)
41 2ltp_A Nuclear receptor corepr 99.1 2E-14 6.9E-19 119.3 0.0 57 59-115 8-64 (89)
42 2aje_A Telomere repeat-binding 99.4 3.4E-13 1.2E-17 115.7 4.7 79 7-86 6-94 (105)
43 2k9n_A MYB24; R2R3 domain, DNA 99.4 1E-13 3.4E-18 117.6 1.3 69 67-135 1-70 (107)
44 2ckx_A NGTRF1, telomere bindin 99.3 5.1E-13 1.7E-17 110.1 5.0 69 15-84 1-79 (83)
45 2yus_A SWI/SNF-related matrix- 99.3 1.2E-12 4.2E-17 106.7 4.0 53 6-60 10-62 (79)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.2E-12 7.4E-17 104.0 5.3 51 63-113 14-68 (73)
47 2yus_A SWI/SNF-related matrix- 99.3 2.7E-12 9.1E-17 104.7 4.9 48 64-111 15-62 (79)
48 2ckx_A NGTRF1, telomere bindin 99.2 1.9E-11 6.5E-16 100.7 7.1 49 68-116 1-54 (83)
49 1x58_A Hypothetical protein 49 99.2 1.6E-11 5.6E-16 96.2 6.0 50 65-114 6-58 (62)
50 2ltp_A Nuclear receptor corepr 98.8 1.7E-12 5.7E-17 107.7 0.0 55 7-63 9-63 (89)
51 1ign_A Protein (RAP1); RAP1,ye 99.2 8.2E-12 2.8E-16 120.5 4.2 71 63-134 4-80 (246)
52 2juh_A Telomere binding protei 99.2 3E-11 1E-15 106.0 6.6 55 61-115 11-70 (121)
53 2aje_A Telomere repeat-binding 99.2 3.7E-11 1.3E-15 103.1 6.9 53 63-115 9-66 (105)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 7.8E-12 2.7E-16 100.8 2.0 55 7-62 11-68 (73)
55 2cjj_A Radialis; plant develop 99.1 6.3E-11 2.2E-15 99.6 7.1 60 66-125 7-71 (93)
56 2roh_A RTBP1, telomere binding 99.1 1.2E-10 4.1E-15 102.4 7.2 54 63-116 27-85 (122)
57 3hm5_A DNA methyltransferase 1 98.9 2.7E-09 9.2E-14 89.8 7.7 67 50-120 17-88 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.9 2.8E-09 9.7E-14 82.4 6.0 47 66-112 11-57 (61)
59 2cjj_A Radialis; plant develop 98.8 5.8E-10 2E-14 93.7 1.5 48 13-61 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 4.8E-09 1.6E-13 84.2 5.2 57 64-121 5-65 (72)
61 1x58_A Hypothetical protein 49 98.6 1.3E-08 4.6E-13 79.8 2.8 49 12-62 6-57 (62)
62 2eqr_A N-COR1, N-COR, nuclear 98.6 1.5E-08 5.1E-13 78.4 3.0 52 7-60 5-56 (61)
63 2iw5_B Protein corest, REST co 98.6 6.9E-08 2.4E-12 92.7 6.6 49 66-114 132-180 (235)
64 2xag_B REST corepressor 1; ami 98.4 1.6E-07 5.5E-12 98.5 5.4 45 68-112 381-425 (482)
65 1wgx_A KIAA1903 protein; MYB D 98.4 3.1E-07 1.1E-11 74.1 4.7 46 67-112 8-57 (73)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.3 1.2E-07 4.1E-12 76.1 1.2 50 11-62 5-57 (72)
67 1fex_A TRF2-interacting telome 98.2 1E-06 3.5E-11 68.1 4.5 46 67-112 2-57 (59)
68 1fex_A TRF2-interacting telome 98.2 3.2E-07 1.1E-11 70.9 1.6 48 14-62 2-58 (59)
69 2iw5_B Protein corest, REST co 98.2 5.3E-07 1.8E-11 86.6 2.9 50 11-62 130-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.2 5.1E-07 1.7E-11 72.9 1.9 48 14-62 8-58 (73)
71 1ofc_X ISWI protein; nuclear p 98.0 1.5E-05 5.1E-10 79.5 9.0 101 16-117 112-278 (304)
72 1ug2_A 2610100B20RIK gene prod 98.0 1.6E-05 5.5E-10 66.7 7.2 49 69-117 35-86 (95)
73 2yqk_A Arginine-glutamic acid 98.0 1.4E-05 4.9E-10 62.1 6.5 47 63-109 5-52 (63)
74 4iej_A DNA methyltransferase 1 97.8 4.5E-05 1.5E-09 64.2 7.7 62 55-120 22-88 (93)
75 2lr8_A CAsp8-associated protei 96.9 4E-06 1.4E-10 66.8 0.0 45 69-114 16-63 (70)
76 4eef_G F-HB80.4, designed hema 97.7 5.3E-06 1.8E-10 67.1 0.0 43 67-109 20-66 (74)
77 4eef_G F-HB80.4, designed hema 97.7 9.1E-06 3.1E-10 65.7 0.9 44 14-58 20-66 (74)
78 2yqk_A Arginine-glutamic acid 97.5 5.6E-05 1.9E-09 58.7 3.2 50 8-59 3-53 (63)
79 4a69_C Nuclear receptor corepr 97.4 0.00022 7.4E-09 59.7 6.0 44 67-110 43-86 (94)
80 2crg_A Metastasis associated p 97.4 0.00027 9.3E-09 56.1 6.0 43 67-109 8-51 (70)
81 2xag_B REST corepressor 1; ami 97.2 0.00012 4.2E-09 76.9 2.9 46 13-60 379-424 (482)
82 3hm5_A DNA methyltransferase 1 97.1 9.6E-05 3.3E-09 62.2 0.7 47 14-61 30-80 (93)
83 2ebi_A DNA binding protein GT- 97.0 0.00046 1.6E-08 56.0 4.0 49 67-115 4-66 (86)
84 4b4c_A Chromodomain-helicase-D 96.7 0.003 1E-07 58.4 7.2 100 13-113 6-195 (211)
85 2crg_A Metastasis associated p 96.7 0.00068 2.3E-08 53.7 2.4 44 13-58 7-51 (70)
86 4a69_C Nuclear receptor corepr 96.7 0.00072 2.5E-08 56.5 2.5 43 14-58 43-85 (94)
87 2y9y_A Imitation switch protei 96.6 0.006 2.1E-07 62.4 9.3 102 16-118 125-295 (374)
88 2ebi_A DNA binding protein GT- 96.3 0.00056 1.9E-08 55.5 -0.5 49 13-61 3-63 (86)
89 1ug2_A 2610100B20RIK gene prod 95.7 0.004 1.4E-07 52.3 2.1 47 12-59 31-79 (95)
90 2lr8_A CAsp8-associated protei 94.6 0.0019 6.6E-08 51.5 0.0 48 13-62 13-62 (70)
91 1irz_A ARR10-B; helix-turn-hel 93.8 0.2 6.7E-06 39.4 7.1 47 65-111 5-56 (64)
92 4iej_A DNA methyltransferase 1 92.4 0.057 2E-06 45.4 2.3 49 12-61 28-80 (93)
93 1ofc_X ISWI protein; nuclear p 91.1 0.34 1.2E-05 48.3 6.6 48 67-114 110-158 (304)
94 4b4c_A Chromodomain-helicase-D 88.2 0.68 2.3E-05 42.5 5.8 51 65-115 5-60 (211)
95 2xb0_X Chromo domain-containin 87.6 0.27 9.4E-06 48.2 2.9 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 86.6 0.38 1.3E-05 37.8 2.6 49 11-60 4-56 (64)
97 2xb0_X Chromo domain-containin 76.1 5.6 0.00019 38.9 7.2 48 67-114 3-55 (270)
98 2o8x_A Probable RNA polymerase 61.6 11 0.00037 27.4 4.5 42 73-115 18-59 (70)
99 2rq5_A Protein jumonji; develo 58.8 4 0.00014 35.3 1.9 58 24-84 46-114 (121)
100 1ku3_A Sigma factor SIGA; heli 57.8 14 0.00046 27.8 4.6 43 73-116 13-59 (73)
101 2eqy_A RBP2 like, jumonji, at 56.4 43 0.0015 28.5 8.0 39 77-115 46-96 (122)
102 2li6_A SWI/SNF chromatin-remod 55.8 9.8 0.00033 32.2 3.8 38 77-114 53-98 (116)
103 2lm1_A Lysine-specific demethy 52.6 26 0.00088 28.9 5.8 39 77-115 48-98 (107)
104 2jrz_A Histone demethylase jar 52.1 22 0.00075 30.1 5.4 39 77-115 44-94 (117)
105 2p7v_B Sigma-70, RNA polymeras 51.7 14 0.00048 27.3 3.7 42 73-115 8-53 (68)
106 2y9y_A Imitation switch protei 48.0 26 0.00089 35.8 6.1 47 68-115 124-172 (374)
107 1u78_A TC3 transposase, transp 47.7 1E+02 0.0035 24.9 8.9 86 15-106 5-98 (141)
108 3cz6_A DNA-binding protein RAP 47.4 9.2 0.00031 35.1 2.4 30 10-42 110-147 (168)
109 2cxy_A BAF250B subunit, HBAF25 47.1 30 0.001 29.6 5.5 39 77-115 55-105 (125)
110 2li6_A SWI/SNF chromatin-remod 45.2 5 0.00017 34.0 0.3 39 24-63 53-98 (116)
111 3hug_A RNA polymerase sigma fa 44.2 33 0.0011 26.8 5.0 41 73-114 40-80 (92)
112 1kkx_A Transcription regulator 42.8 17 0.00059 31.2 3.4 40 78-117 53-100 (123)
113 2jvw_A Uncharacterized protein 40.7 8.1 0.00028 32.0 0.8 45 22-79 18-69 (88)
114 1ig6_A MRF-2, modulator recogn 38.8 8.8 0.0003 31.9 0.8 40 24-63 37-87 (107)
115 1c20_A DEAD ringer protein; DN 38.2 51 0.0018 28.1 5.6 40 76-115 55-107 (128)
116 2jxj_A Histone demethylase jar 38.0 22 0.00077 28.7 3.2 38 77-114 40-89 (96)
117 1x3u_A Transcriptional regulat 37.8 61 0.0021 24.0 5.5 42 70-114 17-58 (79)
118 2kk0_A AT-rich interactive dom 37.2 45 0.0015 29.3 5.2 39 77-115 68-119 (145)
119 2jrz_A Histone demethylase jar 36.8 7.8 0.00027 32.9 0.2 40 24-63 44-93 (117)
120 1or7_A Sigma-24, RNA polymeras 36.0 61 0.0021 27.7 5.8 32 84-116 154-185 (194)
121 3i4p_A Transcriptional regulat 35.8 32 0.0011 29.9 4.0 43 73-116 3-46 (162)
122 1c20_A DEAD ringer protein; DN 35.6 8.1 0.00028 33.2 0.1 40 24-63 56-106 (128)
123 1tty_A Sigma-A, RNA polymerase 35.5 47 0.0016 25.8 4.6 41 74-115 22-66 (87)
124 3c57_A Two component transcrip 34.2 68 0.0023 25.4 5.4 44 69-115 27-70 (95)
125 2cxy_A BAF250B subunit, HBAF25 33.2 9.1 0.00031 32.8 0.0 40 24-63 55-104 (125)
126 2lm1_A Lysine-specific demethy 31.9 9.2 0.00031 31.7 -0.2 40 24-63 48-97 (107)
127 1je8_A Nitrate/nitrite respons 31.8 66 0.0023 24.7 4.9 43 69-114 21-63 (82)
128 1fse_A GERE; helix-turn-helix 31.5 73 0.0025 23.1 4.9 44 68-114 10-53 (74)
129 3ulq_B Transcriptional regulat 31.2 92 0.0032 24.7 5.8 45 67-114 27-71 (90)
130 2eqy_A RBP2 like, jumonji, at 29.9 12 0.00041 32.0 0.2 40 24-63 46-95 (122)
131 1ig6_A MRF-2, modulator recogn 29.4 27 0.00091 28.9 2.3 38 77-114 37-87 (107)
132 2k27_A Paired box protein PAX- 29.3 2.3E+02 0.0078 23.8 8.4 77 15-96 24-111 (159)
133 2jpc_A SSRB; DNA binding prote 29.2 92 0.0031 21.9 5.0 38 75-114 3-40 (61)
134 1k78_A Paired box protein PAX5 28.4 1.7E+02 0.0058 24.3 7.3 78 14-96 30-118 (149)
135 3mzy_A RNA polymerase sigma-H 27.8 83 0.0029 25.7 5.1 30 84-114 122-151 (164)
136 1xsv_A Hypothetical UPF0122 pr 27.8 86 0.0029 25.9 5.2 40 74-114 29-68 (113)
137 2rq5_A Protein jumonji; develo 27.5 68 0.0023 27.5 4.6 76 14-115 7-97 (121)
138 1rp3_A RNA polymerase sigma fa 27.4 94 0.0032 27.2 5.7 38 77-115 194-231 (239)
139 2dbb_A Putative HTH-type trans 26.9 1E+02 0.0035 25.9 5.6 44 73-117 9-53 (151)
140 2q1z_A RPOE, ECF SIGE; ECF sig 26.4 40 0.0014 28.6 3.0 32 84-116 149-180 (184)
141 2kk0_A AT-rich interactive dom 25.3 27 0.00093 30.7 1.7 40 24-63 68-118 (145)
142 2rnj_A Response regulator prot 24.7 81 0.0028 24.5 4.3 43 69-114 29-71 (91)
143 2e1c_A Putative HTH-type trans 24.1 84 0.0029 27.6 4.7 44 72-116 26-70 (171)
144 2yqf_A Ankyrin-1; death domain 23.7 1.2E+02 0.0042 24.9 5.4 33 71-104 14-46 (111)
145 2cyy_A Putative HTH-type trans 22.1 1.2E+02 0.004 25.6 5.1 43 73-116 7-50 (151)
146 2p1m_A SKP1-like protein 1A; F 21.4 36 0.0012 29.9 1.7 36 38-81 119-154 (160)
147 3cz6_A DNA-binding protein RAP 21.4 56 0.0019 30.0 3.0 26 54-79 100-126 (168)
148 3e7l_A Transcriptional regulat 20.7 1.5E+02 0.005 21.7 4.8 25 72-96 18-42 (63)
149 1p4w_A RCSB; solution structur 20.6 2E+02 0.0069 23.2 6.0 45 67-114 32-76 (99)
150 1ntc_A Protein (nitrogen regul 20.3 1.5E+02 0.0052 23.3 5.1 35 72-107 50-84 (91)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.9e-33 Score=245.52 Aligned_cols=114 Identities=43% Similarity=0.884 Sum_probs=103.2
Q ss_pred CCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHH
Q 013300 2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81 (446)
Q Consensus 2 gR~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlel 81 (446)
.||..+++|.+++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++
T Consensus 15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 58999999999999999999999999999999888999999999 99999999999999999999999999999999999
Q ss_pred HHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 82 v~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
|.+||++|+.||+.|+|||+++||+||+.++++++
T Consensus 94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999887753
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.98 E-value=6e-33 Score=234.23 Aligned_cols=105 Identities=46% Similarity=0.930 Sum_probs=99.6
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChH
Q 013300 11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWS 90 (446)
Q Consensus 11 klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWs 90 (446)
.+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999888999999998 99999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 91 QIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 91 kIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
.||+.|+|||+++||+||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999988753
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=1.1e-32 Score=234.52 Aligned_cols=104 Identities=31% Similarity=0.603 Sum_probs=100.4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHHh
Q 013300 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIA 93 (446)
Q Consensus 14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIA 93 (446)
||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhHHHHHh
Q 013300 94 AQLPGRTDNEIKNLWNSCLKKKLRQ 118 (446)
Q Consensus 94 k~LpgRT~~qcKnRW~~iLkkklr~ 118 (446)
+.|+|||+++||+||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=2.5e-32 Score=239.83 Aligned_cols=110 Identities=33% Similarity=0.623 Sum_probs=104.6
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHH
Q 013300 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQI 92 (446)
Q Consensus 13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskI 92 (446)
.||+||+|||++|+++|.+||.++|..||..|+ +|++.|||+||.++|+|.+++|+||+|||++|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 379999999999999999999989999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHhHHHHHhcCCCC
Q 013300 93 AAQLPGRTDNEIKNLWNSCLKKKLRQRGIDP 123 (446)
Q Consensus 93 Ak~LpgRT~~qcKnRW~~iLkkklr~~g~~p 123 (446)
|++|+|||+++||+||+.+|++.+....++.
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 9999999999999999999999877665444
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=6.3e-32 Score=236.07 Aligned_cols=106 Identities=33% Similarity=0.633 Sum_probs=101.0
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCC
Q 013300 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87 (446)
Q Consensus 8 ~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGn 87 (446)
.++..+||+||+|||++|+++|.+||. +|..||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467789999999999999999999996 8999999999 99999999999999999999999999999999999999999
Q ss_pred ChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300 88 RWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 88 kWskIAk~LpgRT~~qcKnRW~~iLkkk 115 (446)
+|.+||+.|+|||+++||+||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=3.1e-31 Score=238.96 Aligned_cols=113 Identities=43% Similarity=0.870 Sum_probs=108.0
Q ss_pred CCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHH
Q 013300 3 RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH 82 (446)
Q Consensus 3 R~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv 82 (446)
||..+++|.+++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|++++
T Consensus 47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 125 (159)
T ss_dssp HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence 7888899999999999999999999999999878999999998 999999999999999999999999999999999999
Q ss_pred HHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 83 AVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 83 ~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
.+||++|++||+.|+|||+++||+||+.++++++
T Consensus 126 ~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 126 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999887653
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=7e-31 Score=236.71 Aligned_cols=122 Identities=27% Similarity=0.583 Sum_probs=77.3
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCC-ChH
Q 013300 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN-RWS 90 (446)
Q Consensus 12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGn-kWs 90 (446)
+++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 5699999999999999999999889999999999 99999999999999999999999999999999999999995 799
Q ss_pred HHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCccccc
Q 013300 91 QIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVEN 134 (446)
Q Consensus 91 kIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~ 134 (446)
.||+.|+|||+.|||+||+.+|++.+++..|++.++..|.++..
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~ 126 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 126 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHH
Confidence 99999999999999999999999988888888888877766553
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=3.2e-22 Score=174.50 Aligned_cols=95 Identities=23% Similarity=0.538 Sum_probs=68.2
Q ss_pred cccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHHHHHh
Q 013300 40 VPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ 118 (446)
Q Consensus 40 IAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkkklr~ 118 (446)
||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||. +|.+||..|+|||+.||++||+.+|++.+.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999995 7999999999999999999999999998888
Q ss_pred cCCCCCCCCCCcccccC
Q 013300 119 RGIDPVTHKPLSEVENG 135 (446)
Q Consensus 119 ~g~~p~~~k~l~ele~k 135 (446)
..|+++++..|.++...
T Consensus 80 ~~WT~eEd~~L~~~~~~ 96 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKR 96 (128)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 88998888877766543
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.8e-21 Score=152.26 Aligned_cols=67 Identities=28% Similarity=0.643 Sum_probs=64.3
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHH
Q 013300 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEE 75 (446)
Q Consensus 8 ~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED 75 (446)
..+.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 35788999999999999999999999889999999999 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.71 E-value=6.5e-18 Score=162.70 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=91.8
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCC-----ccccccccCcccCccccchhhhcccCCCCc------------------
Q 013300 10 QKLRKGLWSPEEDEKLLRHITKYGHGC-----WSSVPKQAGLQRCGKSCRLRWINYLRPDLK------------------ 66 (446)
Q Consensus 10 ~klkKG~WT~EEDe~LlelV~kyG~~n-----W~kIAk~m~~gRt~kQCR~RW~n~L~P~lk------------------ 66 (446)
+.++|++||+|||++|+++|.++|..+ |.+||+.|+ |||+.|||+||+.+|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 467899999999999999999998643 999999999 99999999999999999986
Q ss_pred -----------cCccCHHHHHHHHHHHHH-h--------------------------------CC---------------
Q 013300 67 -----------RGTFSQQEENLIIELHAV-L--------------------------------GN--------------- 87 (446)
Q Consensus 67 -----------rg~WT~EED~kLlelv~~-y--------------------------------Gn--------------- 87 (446)
+.+||.|||-.|...+.+ | |.
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 899999999999999877 2 11
Q ss_pred ----------ChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300 88 ----------RWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 88 ----------kWskIAk~LpgRT~~qcKnRW~~iLkkk 115 (446)
.|.+||+.+|+||.+++|+||+..|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999887654
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-17 Score=133.62 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=47.2
Q ss_pred chhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300 54 RLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCL 112 (446)
Q Consensus 54 R~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iL 112 (446)
--||.++|+|++++++||+|||++|+++|++||++|++||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 999999999998643
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.66 E-value=1.4e-17 Score=146.06 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=77.9
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccCccccchhhhcccC-----CCCccC-ccCHHHHHH
Q 013300 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA----GLQRCGKSCRLRWINYLR-----PDLKRG-TFSQQEENL 77 (446)
Q Consensus 8 ~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m----~~gRt~kQCR~RW~n~L~-----P~lkrg-~WT~EED~k 77 (446)
.+++.++++||+|||+.|+++|.+||.++|..|++.+ + +||..+|++||.++|+ |.++++ +|++||+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 4577889999999999999999999988999999985 5 8999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCChHH
Q 013300 78 IIELHAVLGNRWSQ 91 (446)
Q Consensus 78 Llelv~~yGnkWsk 91 (446)
|++++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=2e-16 Score=126.04 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=59.4
Q ss_pred cCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCC
Q 013300 61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTH 126 (446)
Q Consensus 61 L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~ 126 (446)
++|.+++++||+|||++|+++|.+||++|..||++|+|||++|||+||+.++++.++. ++++...
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5789999999999999999999999999999999999999999999999999888776 6666544
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=123.54 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=57.2
Q ss_pred ccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcC
Q 013300 60 YLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120 (446)
Q Consensus 60 ~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g 120 (446)
+|+|.+++++||+|||++|+++|++||++|.+||+ |+|||++|||+||+.+|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988654
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=8.2e-17 Score=123.64 Aligned_cols=57 Identities=25% Similarity=0.521 Sum_probs=54.1
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCc
Q 013300 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK 66 (446)
Q Consensus 9 k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lk 66 (446)
.+.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4788999999999999999999999878999999999 99999999999999999875
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.63 E-value=1.1e-16 Score=140.61 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=73.2
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccCccccchhhhccc-----CCCCccCccCHHH-HHHH
Q 013300 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA----GLQRCGKSCRLRWINYL-----RPDLKRGTFSQQE-ENLI 78 (446)
Q Consensus 9 k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m----~~gRt~kQCR~RW~n~L-----~P~lkrg~WT~EE-D~kL 78 (446)
+.+.++++||+|||+.|+++|++||.++|..|++.+ . +||..+|++||.+++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 456789999999999999999999998999999964 5 899999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCC
Q 013300 79 IELHAVLGNR 88 (446)
Q Consensus 79 lelv~~yGnk 88 (446)
++++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=8.9e-17 Score=120.17 Aligned_cols=52 Identities=46% Similarity=0.924 Sum_probs=49.7
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCC
Q 013300 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64 (446)
Q Consensus 12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~ 64 (446)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.|||+||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999878999999999 999999999999999985
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=125.18 Aligned_cols=65 Identities=20% Similarity=0.389 Sum_probs=61.4
Q ss_pred CCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCC
Q 013300 62 RPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTH 126 (446)
Q Consensus 62 ~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~ 126 (446)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+.+|++.+++..|++.++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 8999999999999999999999999999999999988775
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=1.5e-16 Score=118.81 Aligned_cols=52 Identities=33% Similarity=0.669 Sum_probs=48.3
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCC
Q 013300 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64 (446)
Q Consensus 12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~ 64 (446)
+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999878999999999 999999999999999985
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=3.3e-16 Score=123.65 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=59.3
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCc-ccCccccchhhhcccCCCCccCccC
Q 013300 7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGL-QRCGKSCRLRWINYLRPDLKRGTFS 71 (446)
Q Consensus 7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~-gRt~kQCR~RW~n~L~P~lkrg~WT 71 (446)
..+++.++++||+|||++|+++|.+||.++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 3467788999999999999999999998899999999976 8999999999999999999987653
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=8.8e-16 Score=117.87 Aligned_cols=55 Identities=20% Similarity=0.422 Sum_probs=51.2
Q ss_pred CCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 62 RPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 62 ~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
+|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999887643
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.56 E-value=2.9e-15 Score=111.77 Aligned_cols=50 Identities=28% Similarity=0.555 Sum_probs=46.1
Q ss_pred CccCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 65 LKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 65 lkrg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+.+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999998864
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.55 E-value=5.3e-15 Score=116.74 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=54.5
Q ss_pred cCCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC--CCCHHHHHHHHHHHhHHHHHhcC
Q 013300 61 LRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP--GRTDNEIKNLWNSCLKKKLRQRG 120 (446)
Q Consensus 61 L~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~Lp--gRT~~qcKnRW~~iLkkklr~~g 120 (446)
..+..++++||+|||++|+++|.+|| ++|..||+.|+ |||+.|||+||+.+|++.+.+..
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 45667899999999999999999999 79999999999 99999999999999998766543
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.54 E-value=5.4e-15 Score=110.44 Aligned_cols=50 Identities=32% Similarity=0.675 Sum_probs=46.8
Q ss_pred CccCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 65 LKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 65 lkrg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+.+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 699999999999999999999988864
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=2.2e-15 Score=116.21 Aligned_cols=55 Identities=20% Similarity=0.503 Sum_probs=51.6
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCC
Q 013300 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64 (446)
Q Consensus 9 k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~ 64 (446)
.+.+++++||+|||++|+++|.+||.++|.+||+.|+ +|++.|||+||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3678999999999999999999999888999999999 999999999999999864
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=9.8e-15 Score=109.68 Aligned_cols=49 Identities=24% Similarity=0.378 Sum_probs=46.4
Q ss_pred ccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC--CCCHHHHHHHHHHHhHH
Q 013300 66 KRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP--GRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 66 krg~WT~EED~kLlelv~~yG-nkWskIAk~Lp--gRT~~qcKnRW~~iLkk 114 (446)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||+.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999998864
No 27
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-15 Score=119.44 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=54.6
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccC
Q 013300 7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68 (446)
Q Consensus 7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg 68 (446)
+++|.+++++||+|||++|+++|++||. +|.+||+ ++ +|++.|||+||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 6789999999999999999999999996 8999999 77 7999999999999999877664
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.51 E-value=3.1e-15 Score=117.44 Aligned_cols=56 Identities=27% Similarity=0.520 Sum_probs=49.4
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCccccccccC-cccCccccchhhhcccCCCCc
Q 013300 11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG-LQRCGKSCRLRWINYLRPDLK 66 (446)
Q Consensus 11 klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~-~gRt~kQCR~RW~n~L~P~lk 66 (446)
..+|++||+|||++|+++|.+||.++|..||+.++ .+|++.|||+||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999989999999754 289999999999999998764
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.7e-14 Score=111.14 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=48.7
Q ss_pred CCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhH
Q 013300 62 RPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLK 113 (446)
Q Consensus 62 ~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLk 113 (446)
.+.+.+++||+|||++|+++|++|| ++|.+||++|++||+.|||+||+.+|.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3578899999999999999999999 899999999999999999999998774
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.48 E-value=3.7e-14 Score=111.28 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=46.3
Q ss_pred CccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC--CCCHHHHHHHHHHHhHHH
Q 013300 65 LKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP--GRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 65 lkrg~WT~EED~kLlelv~~yG-nkWskIAk~Lp--gRT~~qcKnRW~~iLkkk 115 (446)
.++++||+|||++|+++|.+|| ++|.+||+.++ |||+.|||+||++++|+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999 68999999965 999999999999988754
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.5e-15 Score=118.12 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=55.7
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHhCC-----CCccccccccCcccCccccchhhhcccCCCCccCc
Q 013300 9 KQKLRKGLWSPEEDEKLLRHITKYGH-----GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGT 69 (446)
Q Consensus 9 k~klkKG~WT~EEDe~LlelV~kyG~-----~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~ 69 (446)
++.+++++||+|||++|+++|.+||. .+|..||+.|+ +|++.|||+||++||.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999999996 68999999999 99999999999999998777664
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=113.91 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=53.2
Q ss_pred CCCCccCccCHHHHHHHHHHHHHhC------CChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhc
Q 013300 62 RPDLKRGTFSQQEENLIIELHAVLG------NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119 (446)
Q Consensus 62 ~P~lkrg~WT~EED~kLlelv~~yG------nkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~ 119 (446)
+|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||+.+|++.++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 789999999999999999999999888766543
No 33
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.46 E-value=1.6e-14 Score=108.49 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=46.6
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCccccccccCc-ccCccccchhhhcccC
Q 013300 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGL-QRCGKSCRLRWINYLR 62 (446)
Q Consensus 13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~-gRt~kQCR~RW~n~L~ 62 (446)
++|+||+|||++|+++|.+||.++|..||..|+. +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999875 6999999999999875
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.45 E-value=2e-14 Score=110.31 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=47.9
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhccc
Q 013300 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (446)
Q Consensus 10 ~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L 61 (446)
..+.+++||+|||++|+++|.+||.++|..||+.|+.+|+++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999998899999999986799999999999875
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.1e-13 Score=106.28 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=46.2
Q ss_pred CCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC-CCCHHHHHHHHHHHh
Q 013300 63 PDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP-GRTDNEIKNLWNSCL 112 (446)
Q Consensus 63 P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~Lp-gRT~~qcKnRW~~iL 112 (446)
..+.+++||+|||++|+++|++|| ++|.+||++|+ +||+.|||+||..++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999 89999999999 999999999998754
No 36
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-14 Score=115.21 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=48.3
Q ss_pred CCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCcc
Q 013300 2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR 67 (446)
Q Consensus 2 gR~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkr 67 (446)
+|+.+++.|++++|+||+|||++|+++|.+||.. |..||+.| +|++.||++||. .|....+.
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~-~L~~~~~~ 72 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCR-LMKDTCNT 72 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHH-HCSCCCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHH-HHHHHccC
Confidence 5899999999999999999999999999999955 99999999 699999999997 45555444
No 37
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.43 E-value=2.2e-14 Score=125.11 Aligned_cols=75 Identities=19% Similarity=0.346 Sum_probs=68.2
Q ss_pred CCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCcccccCC
Q 013300 62 RPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGE 136 (446)
Q Consensus 62 ~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~k~ 136 (446)
.+..++|+||+|||++|+++|.+||.+|..||+.|+||+..||++||++.|.+.+.+..|+++++..|.++..+-
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~ 80 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY 80 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999999999988887776443
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.43 E-value=2.2e-14 Score=125.73 Aligned_cols=88 Identities=20% Similarity=0.347 Sum_probs=66.3
Q ss_pred CCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHH
Q 013300 3 RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH 82 (446)
Q Consensus 3 R~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv 82 (446)
||.+++.|.+++|+||+|||++|+++|.+|| ..|..||+.|+ ||++.||+.||.++|++.+..++|+.+-- ...
T Consensus 43 Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~ 116 (131)
T 3zqc_A 43 RWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPD 116 (131)
T ss_dssp HHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCC
T ss_pred HHhhccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cch
Confidence 7888999999999999999999999999999 56999999999 99999999999999999999998876531 001
Q ss_pred HHhCCChHHHhhhC
Q 013300 83 AVLGNRWSQIAAQL 96 (446)
Q Consensus 83 ~~yGnkWskIAk~L 96 (446)
...+.+|..|++.|
T Consensus 117 ~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 117 RSKKRKAADVPKKL 130 (131)
T ss_dssp CC------------
T ss_pred hhhhhhhhhcchhc
Confidence 12235677777765
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.42 E-value=2.2e-14 Score=120.65 Aligned_cols=71 Identities=23% Similarity=0.525 Sum_probs=64.4
Q ss_pred CCccCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCccccc
Q 013300 64 DLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVEN 134 (446)
Q Consensus 64 ~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~ 134 (446)
++++|+||+|||++|+++|.+||. +|..||+.|+||++.||++||...|.+.+.+..|+++++..|.++..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~ 72 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 72 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHH
Confidence 478999999999999999999996 79999999999999999999999999888888888888877776654
No 40
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.42 E-value=2.6e-14 Score=113.73 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=54.1
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCcc
Q 013300 7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR 67 (446)
Q Consensus 7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkr 67 (446)
...|.+++++||+|||++|+++|.+||. +|..||+.|+ +|++.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 3568899999999999999999999995 8999999999 999999999999999876655
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.11 E-value=2e-14 Score=119.25 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=53.4
Q ss_pred cccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300 59 NYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 59 n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkk 115 (446)
..++|.+++++||+|||++|+++|.+||++|..||..|+|||++|||+||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356788999999999999999999999999999999999999999999999888764
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.36 E-value=3.4e-13 Score=115.69 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=67.7
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccCccccchhhhccc-----CCCCccCccCHHHHHH
Q 013300 7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA----GLQRCGKSCRLRWINYL-----RPDLKRGTFSQQEENL 77 (446)
Q Consensus 7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m----~~gRt~kQCR~RW~n~L-----~P~lkrg~WT~EED~k 77 (446)
-.+++.++++||+|||++|+++|.+||.++|..|++.+ + +||..+|++||.+.+ +|.+++|.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~ 84 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN 84 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence 45677899999999999999999999998999999965 5 899999999999998 6999999888777665
Q ss_pred -HHHHHHHhC
Q 013300 78 -IIELHAVLG 86 (446)
Q Consensus 78 -Llelv~~yG 86 (446)
+++++..+|
T Consensus 85 rv~~~~~~~~ 94 (105)
T 2aje_A 85 RVLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 788887754
No 43
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.36 E-value=1e-13 Score=117.59 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=63.2
Q ss_pred cCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCcccccC
Q 013300 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENG 135 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~k 135 (446)
+|+||+|||++|+++|.+||. +|..||..|+||++.||+.||.++|.+.+....|++.++..|.++...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~ 70 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAE 70 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHH
Confidence 589999999999999999995 899999999999999999999999999999999999888877766543
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=5.1e-13 Score=110.11 Aligned_cols=69 Identities=25% Similarity=0.434 Sum_probs=61.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccc----cCcccCccccchhhhccc-----CCCCccC-ccCHHHHHHHHHHHHH
Q 013300 15 GLWSPEEDEKLLRHITKYGHGCWSSVPKQ----AGLQRCGKSCRLRWINYL-----RPDLKRG-TFSQQEENLIIELHAV 84 (446)
Q Consensus 15 G~WT~EEDe~LlelV~kyG~~nW~kIAk~----m~~gRt~kQCR~RW~n~L-----~P~lkrg-~WT~EED~kLlelv~~ 84 (446)
++||+|||++|+++|.+||.++|..|++. ++ +||+.+|++||.+++ +|.+++| +..++...+++++++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999995 67 999999999999988 6776665 6777888889998876
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=106.72 Aligned_cols=53 Identities=23% Similarity=0.446 Sum_probs=48.6
Q ss_pred ccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcc
Q 013300 6 CCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60 (446)
Q Consensus 6 ~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~ 60 (446)
...+....+++||+|||++|+++|.+|| ++|.+||+.|+ +|++.||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 3445667799999999999999999999 88999999999 99999999999988
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.29 E-value=2.2e-12 Score=104.01 Aligned_cols=51 Identities=12% Similarity=0.263 Sum_probs=47.0
Q ss_pred CCCccCccCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhH
Q 013300 63 PDLKRGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCLK 113 (446)
Q Consensus 63 P~lkrg~WT~EED~kLlelv~~yG----nkWskIAk~LpgRT~~qcKnRW~~iLk 113 (446)
+...+++||.|||.+|++++++|| ++|.+||++|||||.+|||+||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 689999999999999999999998764
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.27 E-value=2.7e-12 Score=104.72 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=44.7
Q ss_pred CCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHH
Q 013300 64 DLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC 111 (446)
Q Consensus 64 ~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~i 111 (446)
...+++||+|||++|+++|++||++|.+||++|++||+.|||+||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999753
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.21 E-value=1.9e-11 Score=100.74 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=45.2
Q ss_pred CccCHHHHHHHHHHHHHhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhHHHH
Q 013300 68 GTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 68 g~WT~EED~kLlelv~~yGn-kWskIAk~----LpgRT~~qcKnRW~~iLkkkl 116 (446)
++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999995 99999996 899999999999999987653
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.20 E-value=1.6e-11 Score=96.23 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=45.9
Q ss_pred CccCccCHHHHHHHHHHHHHhCCChHHHh---hhCCCCCHHHHHHHHHHHhHH
Q 013300 65 LKRGTFSQQEENLIIELHAVLGNRWSQIA---AQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 65 lkrg~WT~EED~kLlelv~~yGnkWskIA---k~LpgRT~~qcKnRW~~iLkk 114 (446)
-++.+||+|||+.|+++|++||.+|+.|+ .+|++||+.++|+||+.+.|.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 567999999999999988764
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-12 Score=107.73 Aligned_cols=55 Identities=20% Similarity=0.428 Sum_probs=50.8
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCC
Q 013300 7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRP 63 (446)
Q Consensus 7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P 63 (446)
...+.+++|+||+|||++|+++|.+||. +|..||..|+ +||+.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 4567899999999999999999999995 7999999999 99999999999998863
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.18 E-value=8.2e-12 Score=120.48 Aligned_cols=71 Identities=20% Similarity=0.402 Sum_probs=57.7
Q ss_pred CCCccCccCHHHHHHHHHHHHHhCCC------hHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCccccc
Q 013300 63 PDLKRGTFSQQEENLIIELHAVLGNR------WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVEN 134 (446)
Q Consensus 63 P~lkrg~WT~EED~kLlelv~~yGnk------WskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~ 134 (446)
+.+++++||+|||++|+++|++||++ |.+||++|+|||+++||+||+..|++.+... |...++..+...++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~ 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC
Confidence 35788999999999999999999975 9999999999999999999999999987633 66666665554443
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.17 E-value=3e-11 Score=106.03 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=50.2
Q ss_pred cCCCCccCccCHHHHHHHHHHHHHhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhHHH
Q 013300 61 LRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 61 L~P~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~----LpgRT~~qcKnRW~~iLkkk 115 (446)
+.+..++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456678999999999999999999996 99999998 48999999999999999864
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.16 E-value=3.7e-11 Score=103.06 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=47.9
Q ss_pred CCCccCccCHHHHHHHHHHHHHhCC-ChHHHhhhC----CCCCHHHHHHHHHHHhHHH
Q 013300 63 PDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQL----PGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 63 P~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~L----pgRT~~qcKnRW~~iLkkk 115 (446)
+..++++||+|||+.|+++|++||. +|+.|++.+ ++||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3568899999999999999999995 999999975 8999999999999988754
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.15 E-value=7.8e-12 Score=100.78 Aligned_cols=55 Identities=13% Similarity=0.413 Sum_probs=49.3
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccchhhhcccC
Q 013300 7 CYKQKLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYLR 62 (446)
Q Consensus 7 ~~k~klkKG~WT~EEDe~LlelV~kyG~---~nW~kIAk~m~~gRt~kQCR~RW~n~L~ 62 (446)
..++...+++||+|||++|++++.+||. .+|.+||+.|+ ||+..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999993 57999999999 9999999999998765
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.14 E-value=6.3e-11 Score=99.56 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=50.5
Q ss_pred ccCccCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhHHH-HHhcCCCCCC
Q 013300 66 KRGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCLKKK-LRQRGIDPVT 125 (446)
Q Consensus 66 krg~WT~EED~kLlelv~~yG----nkWskIAk~LpgRT~~qcKnRW~~iLkkk-lr~~g~~p~~ 125 (446)
.+++||.|||++|++++.+|| ++|.+||+.|||||.++||+||+.+++.. ....|..|..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P 71 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFP 71 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 467999999999999999996 67999999999999999999999988765 4455555543
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.10 E-value=1.2e-10 Score=102.35 Aligned_cols=54 Identities=24% Similarity=0.461 Sum_probs=48.2
Q ss_pred CCCccCccCHHHHHHHHHHHHHhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhHHHH
Q 013300 63 PDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 63 P~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~----LpgRT~~qcKnRW~~iLkkkl 116 (446)
...++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++...
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 3457899999999999999999995 99999997 489999999999999987653
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.90 E-value=2.7e-09 Score=89.82 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=61.1
Q ss_pred ccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhC-----CCCCHHHHHHHHHHHhHHHHHhcC
Q 013300 50 GKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQL-----PGRTDNEIKNLWNSCLKKKLRQRG 120 (446)
Q Consensus 50 ~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~L-----pgRT~~qcKnRW~~iLkkklr~~g 120 (446)
..=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.++.++
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34578999999976 89999999999999999999999999999 589999999999999998888774
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.8e-09 Score=82.41 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=43.5
Q ss_pred ccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300 66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCL 112 (446)
Q Consensus 66 krg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iL 112 (446)
..++||+||++++++++.+||.+|..||..|++||..+|+.+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997543
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.84 E-value=5.8e-10 Score=93.71 Aligned_cols=48 Identities=17% Similarity=0.388 Sum_probs=43.4
Q ss_pred CccCCCHHHHHHHHHHHHHhC---CCCccccccccCcccCccccchhhhccc
Q 013300 13 RKGLWSPEEDEKLLRHITKYG---HGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (446)
Q Consensus 13 kKG~WT~EEDe~LlelV~kyG---~~nW~kIAk~m~~gRt~kQCR~RW~n~L 61 (446)
.+++||+|||++|++++.+|| ...|.+||+.|+ |||..+|++||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 468899999999999999997 356999999999 999999999998764
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.79 E-value=4.8e-09 Score=84.24 Aligned_cols=57 Identities=14% Similarity=0.267 Sum_probs=47.6
Q ss_pred CCccCccCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCC
Q 013300 64 DLKRGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI 121 (446)
Q Consensus 64 ~lkrg~WT~EED~kLlelv~~yG----nkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~ 121 (446)
..+.+.||.|||++|.+++++|+ ++|.+||++| |||..+|++||+.+.+......|.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~ 65 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGM 65 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCC
Confidence 34678999999999999999997 5799999998 999999999999876554333333
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.62 E-value=1.3e-08 Score=79.77 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCcccccc---ccCcccCccccchhhhcccC
Q 013300 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPK---QAGLQRCGKSCRLRWINYLR 62 (446)
Q Consensus 12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk---~m~~gRt~kQCR~RW~n~L~ 62 (446)
..+++||+|||+.|+++|++||. +|..|+. .+. +|+...+++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36889999999999999999996 8999994 556 9999999999987654
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.5e-08 Score=78.35 Aligned_cols=52 Identities=10% Similarity=0.168 Sum_probs=46.1
Q ss_pred cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcc
Q 013300 7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60 (446)
Q Consensus 7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~ 60 (446)
..+.+-..++||+||++++++++.+|| .+|..||..|+ +|+..||+.+|...
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 345556789999999999999999999 68999999999 99999999999654
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.56 E-value=6.9e-08 Score=92.66 Aligned_cols=49 Identities=12% Similarity=0.289 Sum_probs=45.7
Q ss_pred ccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 66 krg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
..++||+||++++++++.+||++|..||+.+++||..|||++|+...++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999876655
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.41 E-value=1.6e-07 Score=98.52 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=42.0
Q ss_pred CccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300 68 GTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCL 112 (446)
Q Consensus 68 g~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iL 112 (446)
.+||+||-+++++++.+||.+|..||+.++.||..|||++|....
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999997533
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.36 E-value=3.1e-07 Score=74.11 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=42.2
Q ss_pred cCccCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300 67 RGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCL 112 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yG----nkWskIAk~LpgRT~~qcKnRW~~iL 112 (446)
...||.||+++|.+++..|+ ++|.+||..++|||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998 36999999999999999999998764
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.31 E-value=1.2e-07 Score=76.06 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=43.5
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccchhhhcccC
Q 013300 11 KLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYLR 62 (446)
Q Consensus 11 klkKG~WT~EEDe~LlelV~kyG~---~nW~kIAk~m~~gRt~kQCR~RW~n~L~ 62 (446)
...++.||.|||++|.+++.+|+. +.|..||..+ +|+..+|+.||....+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 345789999999999999999974 5699999997 5999999999987654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.21 E-value=1e-06 Score=68.07 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=41.4
Q ss_pred cCccCHHHHHHHHHHHHHh--------CCC-hHHHhh-hCCCCCHHHHHHHHHHHh
Q 013300 67 RGTFSQQEENLIIELHAVL--------GNR-WSQIAA-QLPGRTDNEIKNLWNSCL 112 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~y--------Gnk-WskIAk-~LpgRT~~qcKnRW~~iL 112 (446)
|.+||+|||..|++.|.+| |++ |.++++ .++++|-.+||+||...|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 433 999999 799999999999998655
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.21 E-value=3.2e-07 Score=70.89 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=43.0
Q ss_pred ccCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCcccCccccchhhhcccC
Q 013300 14 KGLWSPEEDEKLLRHITKY--------GHGCWSSVPK-QAGLQRCGKSCRLRWINYLR 62 (446)
Q Consensus 14 KG~WT~EEDe~LlelV~ky--------G~~nW~kIAk-~m~~gRt~kQCR~RW~n~L~ 62 (446)
|.+||+|||+.|++.|.+| |..-|+++++ .++ +++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4445999999 788 9999999999999875
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.19 E-value=5.3e-07 Score=86.55 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=45.6
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccC
Q 013300 11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR 62 (446)
Q Consensus 11 klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~ 62 (446)
....++||+||++++++++.+|| ++|..||+.|+ +|+..||+.+|.++..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34578999999999999999999 68999999999 9999999999988764
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.16 E-value=5.1e-07 Score=72.89 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=43.3
Q ss_pred ccCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccchhhhcccC
Q 013300 14 KGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYLR 62 (446)
Q Consensus 14 KG~WT~EEDe~LlelV~kyG~---~nW~kIAk~m~~gRt~kQCR~RW~n~L~ 62 (446)
...||.+|+++|.+++..|+. ++|..||..|+ +|+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 467999999999999999975 56999999999 9999999999987654
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.99 E-value=1.5e-05 Score=79.53 Aligned_cols=101 Identities=17% Similarity=0.283 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccch-------hhhc---------c-------------------
Q 013300 16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRL-------RWIN---------Y------------------- 60 (446)
Q Consensus 16 ~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~-------RW~n---------~------------------- 60 (446)
-||..|...++.++.+||..+|..||..|+ +++...++. ||.. .
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999998 899877753 2210 0
Q ss_pred ------------c---CCCCccCccCHHHHHHHHHHHHHhCC----ChHHHhh------------hCCCCCHHHHHHHHH
Q 013300 61 ------------L---RPDLKRGTFSQQEENLIIELHAVLGN----RWSQIAA------------QLPGRTDNEIKNLWN 109 (446)
Q Consensus 61 ------------L---~P~lkrg~WT~EED~kLlelv~~yGn----kWskIAk------------~LpgRT~~qcKnRW~ 109 (446)
| .+..+...||+|||..||-++.+||- .|..|.. ++..||+.+|..|..
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 0 01224468999999999999999994 5999962 356799999999999
Q ss_pred HHhHHHHH
Q 013300 110 SCLKKKLR 117 (446)
Q Consensus 110 ~iLkkklr 117 (446)
.+++-..+
T Consensus 271 tLi~~iek 278 (304)
T 1ofc_X 271 TLITLIER 278 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876544
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.96 E-value=1.6e-05 Score=66.66 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=45.0
Q ss_pred ccCHHHHHHHHHHHHHhCC---ChHHHhhhCCCCCHHHHHHHHHHHhHHHHH
Q 013300 69 TFSQQEENLIIELHAVLGN---RWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117 (446)
Q Consensus 69 ~WT~EED~kLlelv~~yGn---kWskIAk~LpgRT~~qcKnRW~~iLkkklr 117 (446)
-||.|||+.||..+++-|. .|..||+.|.+|+.+||++||+.+++-.-.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999996 799999999999999999999998875544
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=1.4e-05 Score=62.11 Aligned_cols=47 Identities=13% Similarity=0.243 Sum_probs=43.8
Q ss_pred CCCccCccCHHHHHHHHHHHHHhCCChHHHhh-hCCCCCHHHHHHHHH
Q 013300 63 PDLKRGTFSQQEENLIIELHAVLGNRWSQIAA-QLPGRTDNEIKNLWN 109 (446)
Q Consensus 63 P~lkrg~WT~EED~kLlelv~~yGnkWskIAk-~LpgRT~~qcKnRW~ 109 (446)
|.+...+||+||-++..+++.+||.+|..|++ .|++|+..+|...|.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 66788899999999999999999999999999 589999999998886
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.83 E-value=4.5e-05 Score=64.19 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=53.8
Q ss_pred hhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCC-----CCCHHHHHHHHHHHhHHHHHhcC
Q 013300 55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLP-----GRTDNEIKNLWNSCLKKKLRQRG 120 (446)
Q Consensus 55 ~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~Lp-----gRT~~qcKnRW~~iLkkklr~~g 120 (446)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|+||..+.++.++.++
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 45666664 3689999999999999999999999999874 79999999999999998887664
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.93 E-value=4e-06 Score=66.85 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=41.9
Q ss_pred ccCHHHHHHHHHHHHHhCC---ChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 69 TFSQQEENLIIELHAVLGN---RWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 69 ~WT~EED~kLlelv~~yGn---kWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
-||.|||+.||..+++-|. .|..||+.| +|+++||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999996 799999999 99999999999987753
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.69 E-value=5.3e-06 Score=67.05 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=38.7
Q ss_pred cCccCHHHHHHHHHHHHHhCC----ChHHHhhhCCCCCHHHHHHHHH
Q 013300 67 RGTFSQQEENLIIELHAVLGN----RWSQIAAQLPGRTDNEIKNLWN 109 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yGn----kWskIAk~LpgRT~~qcKnRW~ 109 (446)
.+.||.||+++|..+++.|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999884
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.66 E-value=9.1e-06 Score=65.71 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=39.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccchhhh
Q 013300 14 KGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWI 58 (446)
Q Consensus 14 KG~WT~EEDe~LlelV~kyG~---~nW~kIAk~m~~gRt~kQCR~RW~ 58 (446)
.+.||.||+++|..++.+|+. ..|.+||..|| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 467999999999999999975 36999999999 999999999985
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=5.6e-05 Score=58.73 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=44.3
Q ss_pred ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccCccccchhhhc
Q 013300 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWIN 59 (446)
Q Consensus 8 ~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk-~m~~gRt~kQCR~RW~n 59 (446)
-.|.+....||+||-++..+++.+|| .+|..|++ .++ +|+..+|.+-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 35778889999999999999999999 57999999 588 9999999987753
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.41 E-value=0.00022 Score=59.70 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=41.3
Q ss_pred cCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHH
Q 013300 67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS 110 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~ 110 (446)
...||+||.++..+++..||.+|..||..|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998864
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.38 E-value=0.00027 Score=56.05 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=40.5
Q ss_pred cCccCHHHHHHHHHHHHHhCCChHHHhh-hCCCCCHHHHHHHHH
Q 013300 67 RGTFSQQEENLIIELHAVLGNRWSQIAA-QLPGRTDNEIKNLWN 109 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yGnkWskIAk-~LpgRT~~qcKnRW~ 109 (446)
..+||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999 599999999999887
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.21 E-value=0.00012 Score=76.89 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=42.7
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcc
Q 013300 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60 (446)
Q Consensus 13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~ 60 (446)
...+||.||-+++++++.+|| .+|..||+.++ +|+..|||..|.++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 468999999999999999999 68999999999 99999999998764
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.11 E-value=9.6e-05 Score=62.16 Aligned_cols=47 Identities=11% Similarity=0.258 Sum_probs=41.3
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccC----cccCccccchhhhccc
Q 013300 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG----LQRCGKSCRLRWINYL 61 (446)
Q Consensus 14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~----~gRt~kQCR~RW~n~L 61 (446)
...||.||+..|++++++|+ -.|..|+..+. .+|+..++++||....
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999 45999999983 2799999999997654
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.02 E-value=0.00046 Score=55.97 Aligned_cols=49 Identities=22% Similarity=0.438 Sum_probs=40.7
Q ss_pred cCccCHHHHHHHHHHHHHhCC----------ChHHHhhhCC----CCCHHHHHHHHHHHhHHH
Q 013300 67 RGTFSQQEENLIIELHAVLGN----------RWSQIAAQLP----GRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yGn----------kWskIAk~Lp----gRT~~qcKnRW~~iLkkk 115 (446)
...||.+|-..||+++.++.. .|..||..|. .||+.||+++|.++.+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999976431 4999999973 699999999999866554
No 84
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.70 E-value=0.003 Score=58.40 Aligned_cols=100 Identities=12% Similarity=0.176 Sum_probs=68.2
Q ss_pred CccCCCHHHHHHHHHHHHHhC--CCCccccccc--cCcccCccccch-------hhhccc--------------------
Q 013300 13 RKGLWSPEEDEKLLRHITKYG--HGCWSSVPKQ--AGLQRCGKSCRL-------RWINYL-------------------- 61 (446)
Q Consensus 13 kKG~WT~EEDe~LlelV~kyG--~~nW~kIAk~--m~~gRt~kQCR~-------RW~n~L-------------------- 61 (446)
....||+.|-..|++++.+|| ...|..|+.. +. +|+...+++ ++...+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 456799999999999999999 5679999864 33 455443332 000000
Q ss_pred ---------------------------------------C-----CCCccCccCHHHHHHHHHHHHHhC-CChHHHhhh-
Q 013300 62 ---------------------------------------R-----PDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQ- 95 (446)
Q Consensus 62 ---------------------------------------~-----P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~- 95 (446)
- +......||.+||..||..+.+|| ++|..|-..
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 0 001123699999999999999999 999999663
Q ss_pred -C--C----------CCCHHHHHHHHHHHhH
Q 013300 96 -L--P----------GRTDNEIKNLWNSCLK 113 (446)
Q Consensus 96 -L--p----------gRT~~qcKnRW~~iLk 113 (446)
| . .++...+..|-..+|+
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHH
Confidence 1 1 2457789999776665
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.70 E-value=0.00068 Score=53.73 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=39.8
Q ss_pred CccCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccCccccchhhh
Q 013300 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWI 58 (446)
Q Consensus 13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk-~m~~gRt~kQCR~RW~ 58 (446)
....||+||-++..+++.+|| .+|..|++ .++ +|+..+|.+-|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHH
Confidence 466899999999999999999 57999999 588 999999998775
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.67 E-value=0.00072 Score=56.53 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=39.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhh
Q 013300 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWI 58 (446)
Q Consensus 14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~ 58 (446)
...||+||.+++.+++..|| .+|..||..++ +|+..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence 56799999999999999999 67999999999 999999998774
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.61 E-value=0.006 Score=62.40 Aligned_cols=102 Identities=18% Similarity=0.316 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhccc----------------------------------
Q 013300 16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL---------------------------------- 61 (446)
Q Consensus 16 ~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L---------------------------------- 61 (446)
-|+.-|=..++.++.+||..+-..||..|+.+++...++ +|...+
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999996467766665 221110
Q ss_pred --------C----------CC-CccCccCHHHHHHHHHHHHHhC----CChHHHhhh------------CCCCCHHHHHH
Q 013300 62 --------R----------PD-LKRGTFSQQEENLIIELHAVLG----NRWSQIAAQ------------LPGRTDNEIKN 106 (446)
Q Consensus 62 --------~----------P~-lkrg~WT~EED~kLlelv~~yG----nkWskIAk~------------LpgRT~~qcKn 106 (446)
+ +. .+...||+|||..||-++.+|| +.|.+|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 11 1345799999999999999999 469999444 35699999999
Q ss_pred HHHHHhHHHHHh
Q 013300 107 LWNSCLKKKLRQ 118 (446)
Q Consensus 107 RW~~iLkkklr~ 118 (446)
|...+++-..+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999765443
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.29 E-value=0.00056 Score=55.48 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=39.7
Q ss_pred CccCCCHHHHHHHHHHHHHhCC---------CCccccccccC---cccCccccchhhhccc
Q 013300 13 RKGLWSPEEDEKLLRHITKYGH---------GCWSSVPKQAG---LQRCGKSCRLRWINYL 61 (446)
Q Consensus 13 kKG~WT~EEDe~LlelV~kyG~---------~nW~kIAk~m~---~gRt~kQCR~RW~n~L 61 (446)
+...||.+|..+|++++..+.. .-|..||..|. ..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5788999999999999986421 14999999753 4799999999998653
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.69 E-value=0.004 Score=52.29 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=41.4
Q ss_pred CCccCCCHHHHHHHHHHHHHhCC--CCccccccccCcccCccccchhhhc
Q 013300 12 LRKGLWSPEEDEKLLRHITKYGH--GCWSSVPKQAGLQRCGKSCRLRWIN 59 (446)
Q Consensus 12 lkKG~WT~EEDe~LlelV~kyG~--~nW~kIAk~m~~gRt~kQCR~RW~n 59 (446)
-+--.||.|||..|+..+++.|. ..|..||+.++ +|++.|+++|++.
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 34456999999999999999985 35999999998 8999999999975
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.63 E-value=0.0019 Score=51.53 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=41.0
Q ss_pred CccCCCHHHHHHHHHHHHHhCC--CCccccccccCcccCccccchhhhcccC
Q 013300 13 RKGLWSPEEDEKLLRHITKYGH--GCWSSVPKQAGLQRCGKSCRLRWINYLR 62 (446)
Q Consensus 13 kKG~WT~EEDe~LlelV~kyG~--~nW~kIAk~m~~gRt~kQCR~RW~n~L~ 62 (446)
.--.||.|||..|+..+++.|. .-|..||+.+ +|++.|+.+||...+.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 3457999999999999999986 3599999988 4999999999987543
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.78 E-value=0.2 Score=39.39 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=40.4
Q ss_pred CccCccCHHHHHHHHHHHHHhCCC---hHHHhhhC--CCCCHHHHHHHHHHH
Q 013300 65 LKRGTFSQQEENLIIELHAVLGNR---WSQIAAQL--PGRTDNEIKNLWNSC 111 (446)
Q Consensus 65 lkrg~WT~EED~kLlelv~~yGnk---WskIAk~L--pgRT~~qcKnRW~~i 111 (446)
..+-.||+|..++.+++|.++|.. +..|.+.| +|.|..+|+.|...+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 356689999999999999999954 88999997 589999999988653
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.37 E-value=0.057 Score=45.37 Aligned_cols=49 Identities=12% Similarity=0.295 Sum_probs=40.4
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCCCccccccccC----cccCccccchhhhccc
Q 013300 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG----LQRCGKSCRLRWINYL 61 (446)
Q Consensus 12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~----~gRt~kQCR~RW~n~L 61 (446)
++...||.||...|++++++|+- .|--|+.... ..|+..++++||....
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999994 5999998764 2688899999987653
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.14 E-value=0.34 Score=48.34 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=42.0
Q ss_pred cCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 67 RGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
-+.||..|...++.++.+|| +.|..||..|+|+|...|+..+.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 35799999999999999999 6899999999999999997776655544
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=88.17 E-value=0.68 Score=42.46 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=41.6
Q ss_pred CccCccCHHHHHHHHHHHHHhC---CChHHHhhh--CCCCCHHHHHHHHHHHhHHH
Q 013300 65 LKRGTFSQQEENLIIELHAVLG---NRWSQIAAQ--LPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 65 lkrg~WT~EED~kLlelv~~yG---nkWskIAk~--LpgRT~~qcKnRW~~iLkkk 115 (446)
-....||+.|-..|+.++.+|| .+|..|++. |.+|+...|+..+..++..-
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3457899999999999999999 589999876 78999999998776655543
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.56 E-value=0.27 Score=48.18 Aligned_cols=28 Identities=46% Similarity=0.916 Sum_probs=26.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccc
Q 013300 15 GLWSPEEDEKLLRHITKYGHGCWSSVPK 42 (446)
Q Consensus 15 G~WT~EEDe~LlelV~kyG~~nW~kIAk 42 (446)
..|+.+||..|+..|.+||.++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999965
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=86.59 E-value=0.38 Score=37.77 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=37.9
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCCC---ccccccccCc-ccCccccchhhhcc
Q 013300 11 KLRKGLWSPEEDEKLLRHITKYGHGC---WSSVPKQAGL-QRCGKSCRLRWINY 60 (446)
Q Consensus 11 klkKG~WT~EEDe~LlelV~kyG~~n---W~kIAk~m~~-gRt~kQCR~RW~n~ 60 (446)
+..+-.||+|..++.+++|.+.| .+ ++.|.+.|+. +.|..+++-|.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 44678899999999999999999 44 5788777653 56777777665544
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=76.07 E-value=5.6 Score=38.93 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=42.7
Q ss_pred cCccCHHHHHHHHHHHHHhC---CChHHHhhh--CCCCCHHHHHHHHHHHhHH
Q 013300 67 RGTFSQQEENLIIELHAVLG---NRWSQIAAQ--LPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yG---nkWskIAk~--LpgRT~~qcKnRW~~iLkk 114 (446)
++.||+-|-+.|++.+.+|| .+|..|+.. |..|+...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999776 7899999999999877754
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=61.62 E-value=11 Score=27.45 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300 73 QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 73 EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkk 115 (446)
+.+..++.++...|-.+.+||..| |-+...|+.+....+++-
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455666667667788999999999 789999998887766543
No 99
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=58.83 E-value=4 Score=35.30 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC----ccccchhhhcccCCCCccCccCHHHHHHHHHHHHH
Q 013300 24 KLLRHITKYGH-------GCWSSVPKQAGLQRC----GKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAV 84 (446)
Q Consensus 24 ~LlelV~kyG~-------~nW~kIAk~m~~gRt----~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~ 84 (446)
+|..+|.+.|. +.|.+||..|+...+ +...|..|.++|.| ....+++|-..|.+-|..
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~---YE~~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS---YDSLSPEEHRRLEKEVLM 114 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH---HHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH---HHCcCHHHHhhHHHHHHH
Confidence 34445555543 459999999875443 34668889999875 345888999988877653
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=57.83 E-value=14 Score=27.81 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH----hCCChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 73 QEENLIIELHAV----LGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 73 EED~kLlelv~~----yGnkWskIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
+.+..++.+.-. .|-.|.+||..| |-+...|+.+....+++-.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 345555555554 577899999999 8899999998887665543
No 101
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.41 E-value=43 Score=28.51 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC--------ChHHHhhhCCCCC----HHHHHHHHHHHhHHH
Q 013300 77 LIIELHAVLGN--------RWSQIAAQLPGRT----DNEIKNLWNSCLKKK 115 (446)
Q Consensus 77 kLlelv~~yGn--------kWskIAk~LpgRT----~~qcKnRW~~iLkkk 115 (446)
+|..+|.+.|+ .|.+|+..|.-.. ...+|..|..+|-..
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46677777774 6999999984432 468899999888763
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.80 E-value=9.8 Score=32.21 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=30.0
Q ss_pred HHHHHHHHhCC--------ChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 77 LIIELHAVLGN--------RWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 77 kLlelv~~yGn--------kWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
+|..+|.+.|+ .|.+||..|+--....+|..|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 46677777774 699999998555588999999988865
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=52.58 E-value=26 Score=28.90 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--------ChHHHhhhCCCCC----HHHHHHHHHHHhHHH
Q 013300 77 LIIELHAVLGN--------RWSQIAAQLPGRT----DNEIKNLWNSCLKKK 115 (446)
Q Consensus 77 kLlelv~~yGn--------kWskIAk~LpgRT----~~qcKnRW~~iLkkk 115 (446)
+|..+|.+.|+ .|.+||..|+--. ...+|..|..+|-+.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46666777774 7999999995433 578899998887653
No 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.12 E-value=22 Score=30.11 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=29.7
Q ss_pred HHHHHHHHhCC--------ChHHHhhhCCCCC----HHHHHHHHHHHhHHH
Q 013300 77 LIIELHAVLGN--------RWSQIAAQLPGRT----DNEIKNLWNSCLKKK 115 (446)
Q Consensus 77 kLlelv~~yGn--------kWskIAk~LpgRT----~~qcKnRW~~iLkkk 115 (446)
+|..+|.+.|+ .|.+||..|+--. ...+|..|..+|-..
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46777777774 6999999984432 578899999888663
No 105
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=51.73 E-value=14 Score=27.31 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH----HhCCChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300 73 QEENLIIELHA----VLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 73 EED~kLlelv~----~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkk 115 (446)
+.+..++.+.- ..|-.+.+||+.| |-+...|+.+....+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34445555554 3477899999999 889999999888766543
No 106
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=48.03 E-value=26 Score=35.84 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=38.9
Q ss_pred CccCHHHHHHHHHHHHHhC-CChHHHhhhCC-CCCHHHHHHHHHHHhHHH
Q 013300 68 GTFSQQEENLIIELHAVLG-NRWSQIAAQLP-GRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 68 g~WT~EED~kLlelv~~yG-nkWskIAk~Lp-gRT~~qcKnRW~~iLkkk 115 (446)
+.|+.-|=..++.++.+|| +.-..||..|. |+|...|+ +|...+=.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHh
Confidence 4788888899999999999 56999999997 99999999 555444443
No 107
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=47.74 E-value=1e+02 Score=24.90 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=51.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCC------CCccCccCHHHHHHHHHHHHHhC-C
Q 013300 15 GLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRP------DLKRGTFSQQEENLIIELHAVLG-N 87 (446)
Q Consensus 15 G~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P------~lkrg~WT~EED~kLlelv~~yG-n 87 (446)
...|.++-..++.++. -| ..-.+||+.++ .+...++ ||...... .......+++++..|+++ ...+ -
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 3578888888888774 45 45789999887 3333332 33322111 112235788888888887 3333 3
Q ss_pred ChHHHhhhCCC-CCHHHHHH
Q 013300 88 RWSQIAAQLPG-RTDNEIKN 106 (446)
Q Consensus 88 kWskIAk~Lpg-RT~~qcKn 106 (446)
.=.+|+..|+- -+...|..
T Consensus 79 s~~~i~~~lg~~~s~~tV~r 98 (141)
T 1u78_A 79 TARDIRNELQLSASKRTILN 98 (141)
T ss_dssp CHHHHHHHTTCCSCHHHHHH
T ss_pred CHHHHHHHHCCCccHHHHHH
Confidence 34788888832 45555554
No 108
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=47.43 E-value=9.2 Score=35.13 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCCCccCCCHHHHHHH--------HHHHHHhCCCCcccccc
Q 013300 10 QKLRKGLWSPEEDEKL--------LRHITKYGHGCWSSVPK 42 (446)
Q Consensus 10 ~klkKG~WT~EEDe~L--------lelV~kyG~~nW~kIAk 42 (446)
|.-.+|-||+|+|+.| .++++||| |..|..
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 3456899999999987 46888998 555543
No 109
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=47.14 E-value=30 Score=29.55 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC--------ChHHHhhhCCCCC----HHHHHHHHHHHhHHH
Q 013300 77 LIIELHAVLGN--------RWSQIAAQLPGRT----DNEIKNLWNSCLKKK 115 (446)
Q Consensus 77 kLlelv~~yGn--------kWskIAk~LpgRT----~~qcKnRW~~iLkkk 115 (446)
+|..+|.++|+ .|.+||..|.--. ...+|..|..+|-..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46667777774 7999999984433 568899999888764
No 110
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.20 E-value=5 Score=34.02 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=29.9
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccCccccchhhhcccCC
Q 013300 24 KLLRHITKYGH-------GCWSSVPKQAGLQRCGKSCRLRWINYLRP 63 (446)
Q Consensus 24 ~LlelV~kyG~-------~nW~kIAk~m~~gRt~kQCR~RW~n~L~P 63 (446)
+|..+|.+.|. +.|.+||..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46777777764 46999999998443 78888899888864
No 111
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=44.21 E-value=33 Score=26.78 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 73 QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 73 EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
+.+..++.++...|-.-.+||+.| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 355566666666788899999999 88899999888766544
No 112
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=42.85 E-value=17 Score=31.24 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=29.8
Q ss_pred HHHHHHHhCC--------ChHHHhhhCCCCCHHHHHHHHHHHhHHHHH
Q 013300 78 IIELHAVLGN--------RWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117 (446)
Q Consensus 78 Llelv~~yGn--------kWskIAk~LpgRT~~qcKnRW~~iLkkklr 117 (446)
|..+|.+.|+ .|.+||..|.--....+|..|..+|-+.-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 5555555553 599999998555589999999988876543
No 113
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=40.66 E-value=8.1 Score=32.00 Aligned_cols=45 Identities=18% Similarity=0.445 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCC-------CccCccCHHHHHHHH
Q 013300 22 DEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD-------LKRGTFSQQEENLII 79 (446)
Q Consensus 22 De~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~-------lkrg~WT~EED~kLl 79 (446)
+..|.++|..|| |+..+..+. ..|.. .+|. +++.+|..+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999999 999998776 33432 3454 357788887666553
No 114
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=38.77 E-value=8.8 Score=31.88 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC-------CCccccccccCccc----CccccchhhhcccCC
Q 013300 24 KLLRHITKYGH-------GCWSSVPKQAGLQR----CGKSCRLRWINYLRP 63 (446)
Q Consensus 24 ~LlelV~kyG~-------~nW~kIAk~m~~gR----t~kQCR~RW~n~L~P 63 (446)
+|..+|.+.|. +.|.+||..|+... .+..++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777763 46999999987433 246778889998876
No 115
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=38.22 E-value=51 Score=28.12 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCC--------ChHHHhhhCCC--C---CHHHHHHHHHHHhHHH
Q 013300 76 NLIIELHAVLGN--------RWSQIAAQLPG--R---TDNEIKNLWNSCLKKK 115 (446)
Q Consensus 76 ~kLlelv~~yGn--------kWskIAk~Lpg--R---T~~qcKnRW~~iLkkk 115 (446)
-+|..+|.+.|+ .|.+||..|+- . ....+|..|..+|-+.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 356677777774 79999999843 2 2578899999888764
No 116
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=37.98 E-value=22 Score=28.69 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=26.5
Q ss_pred HHHHHHHHhCC--------ChHHHhhhCCCC----CHHHHHHHHHHHhHH
Q 013300 77 LIIELHAVLGN--------RWSQIAAQLPGR----TDNEIKNLWNSCLKK 114 (446)
Q Consensus 77 kLlelv~~yGn--------kWskIAk~LpgR----T~~qcKnRW~~iLkk 114 (446)
+|..+|.+.|+ .|.+||..|.-- ....+|..|..+|-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666666663 699999998432 256888888776654
No 117
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.78 E-value=61 Score=23.96 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=30.8
Q ss_pred cCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 70 FSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 70 WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
+++.|-+ ++.++ ..|-.-.+||..| |-+...|+.+...++++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555544 44555 5678899999999 77999999888776654
No 118
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=37.16 E-value=45 Score=29.27 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC--------ChHHHhhhCCCC-----CHHHHHHHHHHHhHHH
Q 013300 77 LIIELHAVLGN--------RWSQIAAQLPGR-----TDNEIKNLWNSCLKKK 115 (446)
Q Consensus 77 kLlelv~~yGn--------kWskIAk~LpgR-----T~~qcKnRW~~iLkkk 115 (446)
+|..+|.+.|+ .|.+||..|.-- ....+|..|..+|-..
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 46677777774 699999998432 2578899998888664
No 119
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=36.77 E-value=7.8 Score=32.92 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC---ccccchhhhcccCC
Q 013300 24 KLLRHITKYGH-------GCWSSVPKQAGLQRC---GKSCRLRWINYLRP 63 (446)
Q Consensus 24 ~LlelV~kyG~-------~nW~kIAk~m~~gRt---~kQCR~RW~n~L~P 63 (446)
+|..+|.+.|. +.|.+||..|+...+ +...|..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778888774 469999999885432 45667788887754
No 120
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.04 E-value=61 Score=27.66 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=25.6
Q ss_pred HhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 84 VLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 84 ~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
..|-...+||+.| |-+...|+.+....+++-.
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3466799999999 8899999999887766543
No 121
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.78 E-value=32 Score=29.85 Aligned_cols=43 Identities=7% Similarity=0.026 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 73 QEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 73 EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
+-|.+|+++.++.| -.|.+||+.+ |-+...|+.|++.+.+..+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 56888999998877 5799999999 8899999999987665554
No 122
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=35.55 E-value=8.1 Score=33.22 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC----ccccchhhhcccCC
Q 013300 24 KLLRHITKYGH-------GCWSSVPKQAGLQRC----GKSCRLRWINYLRP 63 (446)
Q Consensus 24 ~LlelV~kyG~-------~nW~kIAk~m~~gRt----~kQCR~RW~n~L~P 63 (446)
+|..+|.+.|. +.|.+||..|+...+ +..++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777764 469999999875432 35667888888765
No 123
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=35.51 E-value=47 Score=25.81 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=30.4
Q ss_pred HHHHHHHHHHH----hCCChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300 74 EENLIIELHAV----LGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 74 ED~kLlelv~~----yGnkWskIAk~LpgRT~~qcKnRW~~iLkkk 115 (446)
.+..++.+.-- .|-.+.+||..| |-+...|+.+-...+++-
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 45555555544 567899999999 899999999887766543
No 124
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=34.19 E-value=68 Score=25.38 Aligned_cols=44 Identities=27% Similarity=0.245 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300 69 TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 69 ~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkk 115 (446)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+...++++-
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45665555544 45 7788899999999 789999999887765443
No 125
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=33.22 E-value=9.1 Score=32.81 Aligned_cols=40 Identities=18% Similarity=0.389 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC---ccccchhhhcccCC
Q 013300 24 KLLRHITKYGH-------GCWSSVPKQAGLQRC---GKSCRLRWINYLRP 63 (446)
Q Consensus 24 ~LlelV~kyG~-------~nW~kIAk~m~~gRt---~kQCR~RW~n~L~P 63 (446)
+|..+|.+.|. +.|.+||..|+...+ +..+|..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777764 469999999885432 34667777777753
No 126
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=31.92 E-value=9.2 Score=31.66 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=27.3
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC---ccccchhhhcccCC
Q 013300 24 KLLRHITKYGH-------GCWSSVPKQAGLQRC---GKSCRLRWINYLRP 63 (446)
Q Consensus 24 ~LlelV~kyG~-------~nW~kIAk~m~~gRt---~kQCR~RW~n~L~P 63 (446)
+|..+|.+.|. +.|.+||..|+...+ +...+..|.++|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56777777764 469999999884332 35667777777643
No 127
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.81 E-value=66 Score=24.74 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=32.3
Q ss_pred ccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 69 TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 69 ~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
.+|+.|-+.|. ++ ..|-.-.+||+.| |-+...|+.+...++++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666655544 44 5678899999999 78999999988776654
No 128
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=31.55 E-value=73 Score=23.09 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=32.5
Q ss_pred CccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 68 GTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 68 g~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
..+++.|-+.|.. + ..|..-.+||+.+ |-+...|+.+...++++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466666655544 4 5677899999999 77999999888776544
No 129
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.23 E-value=92 Score=24.66 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=34.1
Q ss_pred cCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467777776655444 788899999999 88999999988876655
No 130
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.92 E-value=12 Score=32.04 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=26.9
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC---ccccchhhhcccCC
Q 013300 24 KLLRHITKYGH-------GCWSSVPKQAGLQRC---GKSCRLRWINYLRP 63 (446)
Q Consensus 24 ~LlelV~kyG~-------~nW~kIAk~m~~gRt---~kQCR~RW~n~L~P 63 (446)
+|..+|.+.|. +.|.+|+..|+...+ +...|..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56777777764 469999999884332 24566677776643
No 131
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=29.41 E-value=27 Score=28.90 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=27.0
Q ss_pred HHHHHHHHhC--------CChHHHhhhCCCC-----CHHHHHHHHHHHhHH
Q 013300 77 LIIELHAVLG--------NRWSQIAAQLPGR-----TDNEIKNLWNSCLKK 114 (446)
Q Consensus 77 kLlelv~~yG--------nkWskIAk~LpgR-----T~~qcKnRW~~iLkk 114 (446)
+|..+|.+.| +.|.+||..|+-- ....+|..|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4566666666 3799999998431 246789999887754
No 132
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.28 E-value=2.3e+02 Score=23.84 Aligned_cols=77 Identities=9% Similarity=-0.029 Sum_probs=47.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhccc------CCCCc----cCccCHHHHHHHHHHHHH
Q 013300 15 GLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL------RPDLK----RGTFSQQEENLIIELHAV 84 (446)
Q Consensus 15 G~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L------~P~lk----rg~WT~EED~kLlelv~~ 84 (446)
.+.|.++-..++.++. .| ....+||+.++ .+... ..||.+.. .+... ....++++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4689999888888884 45 45789999887 33332 33444332 22211 234788888888888876
Q ss_pred hC-CChHHHhhhC
Q 013300 85 LG-NRWSQIAAQL 96 (446)
Q Consensus 85 yG-nkWskIAk~L 96 (446)
.. -.-.+|+..+
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 53 2234555554
No 133
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.21 E-value=92 Score=21.87 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 75 ENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 75 D~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
+..++.+ -..|-.-.+||..| |-+...|+.+...++++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455666 35677789999999 78999999988876654
No 134
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.45 E-value=1.7e+02 Score=24.26 Aligned_cols=78 Identities=9% Similarity=-0.008 Sum_probs=48.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcc------cCCCCc----cCccCHHHHHHHHHHHH
Q 013300 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY------LRPDLK----RGTFSQQEENLIIELHA 83 (446)
Q Consensus 14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~------L~P~lk----rg~WT~EED~kLlelv~ 83 (446)
..+.|.|+-..++.++. .| ....+||+.++ .+... ..||.+. +.+... ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~T-V~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGC-VSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHH-HHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHH-HHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689999888888884 45 45789999887 33332 2334322 222222 23478888888888887
Q ss_pred HhC-CChHHHhhhC
Q 013300 84 VLG-NRWSQIAAQL 96 (446)
Q Consensus 84 ~yG-nkWskIAk~L 96 (446)
+.+ -.-.+|+..+
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 653 2234566554
No 135
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.81 E-value=83 Score=25.66 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=24.0
Q ss_pred HhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 84 VLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 84 ~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
..|-...+||+.| |-+...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466799999999 78999999888766544
No 136
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=27.79 E-value=86 Score=25.87 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 74 EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 74 ED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
.+..++.++...|-...+||..| |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45566666667788899999999 78999998888765544
No 137
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=27.46 E-value=68 Score=27.52 Aligned_cols=76 Identities=17% Similarity=0.318 Sum_probs=48.0
Q ss_pred ccCCCHHHH--HHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCC----
Q 013300 14 KGLWSPEED--EKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN---- 87 (446)
Q Consensus 14 KG~WT~EED--e~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGn---- 87 (446)
+.+|.+.+. +.|.+..++.|.. ...++.. + +|. || =-+|..+|.+.|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P~i-~-gk~-----------lD------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGIT-MDELPLI-G-GCE-----------LD------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCC-CSSCCEE-T-TEE-----------CC------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCCC-CCCCCcC-C-CEe-----------cc------------HHHHHHHHHHcCcHHHh
Confidence 457887775 4567777777743 4444432 2 221 11 1346677777774
Q ss_pred ----ChHHHhhhCCC-C----CHHHHHHHHHHHhHHH
Q 013300 88 ----RWSQIAAQLPG-R----TDNEIKNLWNSCLKKK 115 (446)
Q Consensus 88 ----kWskIAk~Lpg-R----T~~qcKnRW~~iLkkk 115 (446)
.|.+||..|.- . ....+|.+|..+|-..
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 69999999832 1 2567899998877654
No 138
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=27.39 E-value=94 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300 77 LIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (446)
Q Consensus 77 kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkk 115 (446)
.++.++-..|-...+||+.| |-+...|+.+....+++-
T Consensus 194 ~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 194 LVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp HHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 33334334467899999999 889999998887666543
No 139
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.87 E-value=1e+02 Score=25.87 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHHHHH
Q 013300 73 QEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117 (446)
Q Consensus 73 EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkkklr 117 (446)
+-|.+|+.++++.| -.+.+||+.+ |-+...|+.|.+.+.+..+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 45677888888777 5799999999 67999999999877665443
No 140
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=26.41 E-value=40 Score=28.64 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=25.2
Q ss_pred HhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 84 VLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 84 ~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
..|-...+||+.| |-+...|+.+....+++-.
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3466789999999 7888999999987765543
No 141
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=25.29 E-value=27 Score=30.71 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC----ccccchhhhcccCC
Q 013300 24 KLLRHITKYGH-------GCWSSVPKQAGLQRC----GKSCRLRWINYLRP 63 (446)
Q Consensus 24 ~LlelV~kyG~-------~nW~kIAk~m~~gRt----~kQCR~RW~n~L~P 63 (446)
+|..+|.+.|. +.|.+||..|+...+ +..++..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666776664 469999999875332 45678889888876
No 142
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.68 E-value=81 Score=24.47 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=31.9
Q ss_pred ccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 69 TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 69 ~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
..|+.|-+.| .++ ..|-.-.+||+.| |-+...|+.+...++++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555565554 444 5788889999999 88999999988776654
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.12 E-value=84 Score=27.65 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 72 QQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 72 ~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
.+-|.+|+.++.+.| -.+.+||+.+ |-+...|+.|.+.+.+..+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 456778888888877 5799999999 7899999999976655443
No 144
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=23.68 E-value=1.2e+02 Score=24.95 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHH
Q 013300 71 SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEI 104 (446)
Q Consensus 71 T~EED~kLlelv~~yGnkWskIAk~LpgRT~~qc 104 (446)
++.-+..|..+....|..|..+|+.| |=+..+|
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I 46 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDI 46 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 55667778888899999999999999 5555444
No 145
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.07 E-value=1.2e+02 Score=25.64 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300 73 QEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (446)
Q Consensus 73 EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkkkl 116 (446)
+-|.+|+.++.+.| -.+.+||+.+ |-+...|+.|.+.+.+..+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45677888888777 5799999999 7899999999987665544
No 146
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=21.40 E-value=36 Score=29.92 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=27.7
Q ss_pred cccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHH
Q 013300 38 SSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL 81 (446)
Q Consensus 38 ~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlel 81 (446)
..||.++. |+++.+||..+. + ...||+||++.|.+-
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHHh
Confidence 57788888 899999999763 2 235999999887643
No 147
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.36 E-value=56 Score=29.98 Aligned_cols=26 Identities=8% Similarity=0.218 Sum_probs=18.2
Q ss_pred chhhhcccC-CCCccCccCHHHHHHHH
Q 013300 54 RLRWINYLR-PDLKRGTFSQQEENLII 79 (446)
Q Consensus 54 R~RW~n~L~-P~lkrg~WT~EED~kLl 79 (446)
-+.|..-.. |....|-||.|+|+.|.
T Consensus 100 L~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 100 LNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 344443333 56688999999999876
No 148
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.71 E-value=1.5e+02 Score=21.74 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHhhhC
Q 013300 72 QQEENLIIELHAVLGNRWSQIAAQL 96 (446)
Q Consensus 72 ~EED~kLlelv~~yGnkWskIAk~L 96 (446)
.-|...|.+++..+++++++.|+.|
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3477888899999999999999998
No 149
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.60 E-value=2e+02 Score=23.18 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=34.4
Q ss_pred cCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300 67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (446)
Q Consensus 67 rg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk 114 (446)
....|+.|-+.|.- + ..|-.-.+||+.| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45677777766644 4 3688889999999 77999999988776655
No 150
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=20.29 E-value=1.5e+02 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHH
Q 013300 72 QQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNL 107 (446)
Q Consensus 72 ~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnR 107 (446)
.-|...|.+++.++|++.++.|+.| |=+...+..|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 4477888899999999999999998 5555555433
Done!