Query 013302
Match_columns 446
No_of_seqs 222 out of 813
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 4.3E-34 1.5E-38 269.7 15.0 146 289-446 2-148 (226)
2 2xph_A Sentrin-specific protea 100.0 4.3E-34 1.5E-38 271.9 14.5 149 286-446 11-160 (238)
3 1euv_A ULP1 protease; SUMO hyd 100.0 1.7E-32 6E-37 258.2 14.7 144 288-446 3-151 (221)
4 3eay_A Sentrin-specific protea 100.0 6.4E-31 2.2E-35 262.9 10.8 135 307-446 17-229 (323)
5 2bkr_A Sentrin-specific protea 99.9 7.9E-27 2.7E-31 217.6 12.8 114 318-443 9-132 (212)
6 2oix_A Xanthomonas outer prote 99.9 7.3E-22 2.5E-26 182.2 9.1 99 332-438 1-103 (186)
7 4ekf_A Adenain; alpha and beta 71.7 4.8 0.00016 37.9 5.2 31 411-441 52-82 (204)
8 2cxa_A Leucyl/phenylalanyl-tRN 14.1 78 0.0027 30.8 2.2 21 331-351 124-144 (256)
9 1cxq_A Avian sarcoma virus int 9.8 2.1E+02 0.0071 23.7 3.3 33 397-429 12-44 (162)
10 1jhg_A Trp operon repressor; c 8.5 39 0.0013 28.4 -1.8 15 42-56 67-81 (101)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=4.3e-34 Score=269.66 Aligned_cols=146 Identities=40% Similarity=0.707 Sum_probs=132.5
Q ss_pred CCCCCHHHHHHHHHHHcc-CCCceEeeccCCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEech
Q 013302 289 FIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT 367 (446)
Q Consensus 289 f~pLS~E~e~~V~~al~~-~~~~VLv~~~~~gI~It~~DL~~Lkp~~WLNDeIINFYL~lL~er~~~~p~~~~kvh~FNT 367 (446)
|+|||+||+.+|..++.. ++++++++. +++.|+++|+.||.+++||||+|||||+++|.++.... ..+++|+|||
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f~s 77 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILSSA--FKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVFST 77 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEEEE--TTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEECCT
T ss_pred CCCCCHHHHHHHHHHhccCCccceeecc--CCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEEeH
Confidence 789999999999999975 788888875 79999999999999999999999999999998876432 3478999999
Q ss_pred HHHHhhhcCCCCCChhhhHHhhhccccCCCccccceEEEeeccCCceEEEEEecCCCeEEEEcCCCCCCHHHHHhhhcC
Q 013302 368 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLVFF 446 (446)
Q Consensus 368 FFytkL~~~k~g~gy~~VkRWtkrkKVg~nLfskD~IfIPIN~gsHWsLaVId~k~k~I~yyDSLgg~n~~vlk~L~~y 446 (446)
|||++|... +|..|++|++. .++|++|+||||||.+.||+|+||+.+.++|+|||||++.+..+++.|++|
T Consensus 78 ~f~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~ 148 (226)
T 1th0_A 78 FFYPKLKSG----GYQAVKRWTKG----VNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQY 148 (226)
T ss_dssp THHHHHHHH----TGGGTGGGGTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHH
T ss_pred HHHHHhhhc----ccHHHHHHhhc----CCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHH
Confidence 999999986 79999999973 589999999999999999999999999999999999999998888887754
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=4.3e-34 Score=271.89 Aligned_cols=149 Identities=38% Similarity=0.683 Sum_probs=133.6
Q ss_pred CCCCCCCCHHHHHHHHHHHcc-CCCceEeeccCCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEE
Q 013302 286 REPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHF 364 (446)
Q Consensus 286 ~~~f~pLS~E~e~~V~~al~~-~~~~VLv~~~~~gI~It~~DL~~Lkp~~WLNDeIINFYL~lL~er~~~~p~~~~kvh~ 364 (446)
+++|+|||+|++++|++++.. ++++||+.+ +++.|+.+|+.||.+++||||+|||||+++|.++.... ..+++|+
T Consensus 11 ~~~~~~lt~e~~~~v~~~l~~~~~~~vl~~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~ 86 (238)
T 2xph_A 11 EDEFPEITEEMEKEIKNVFRNGNQDEVLSEA--FRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSVHA 86 (238)
T ss_dssp -CCCCCCCHHHHHHHHHHSSSSCTTCCCEEE--TTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCEEE
T ss_pred ccCCCCCCHHHHHHHHHHHcCCChhheeecC--CCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCceee
Confidence 367999999999999999986 677888764 78999999999999999999999999999999876432 3578999
Q ss_pred echHHHHhhhcCCCCCChhhhHHhhhccccCCCccccceEEEeeccCCceEEEEEecCCCeEEEEcCCCCCCHHHHHhhh
Q 013302 365 FNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLV 444 (446)
Q Consensus 365 FNTFFytkL~~~k~g~gy~~VkRWtkrkKVg~nLfskD~IfIPIN~gsHWsLaVId~k~k~I~yyDSLgg~n~~vlk~L~ 444 (446)
||||||++|... +|..|++|+++ .++|++|+||||||.+.||+|+||+.+.++|+|||||++.+..+++.|+
T Consensus 87 f~sff~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~ 158 (238)
T 2xph_A 87 FNTFFFTKLKTA----GYQAVKRWTKK----VDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILL 158 (238)
T ss_dssp CCTTTTHHHHTT----CHHHHTTTTTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHH
T ss_pred eecHHHHHhhhc----ccHHHHHHhcc----CCcccCCEEEEcccCCCceEEEEEEcccceEEEeecccCCCHHHHHHHH
Confidence 999999999986 89999999974 4799999999999999999999999999999999999999988888776
Q ss_pred cC
Q 013302 445 FF 446 (446)
Q Consensus 445 ~y 446 (446)
.|
T Consensus 159 ~~ 160 (238)
T 2xph_A 159 QY 160 (238)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.98 E-value=1.7e-32 Score=258.22 Aligned_cols=144 Identities=32% Similarity=0.610 Sum_probs=126.9
Q ss_pred CCCCCCHHHHHHHHHHHccCCCceEeeccCCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEech
Q 013302 288 PFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT 367 (446)
Q Consensus 288 ~f~pLS~E~e~~V~~al~~~~~~VLv~~~~~gI~It~~DL~~Lkp~~WLNDeIINFYL~lL~er~~~~p~~~~kvh~FNT 367 (446)
.|+|||+|++.+|+.++..+++++++. ..++.|+.+|+.||.+++||||+|||||+++|.+.. +++|+|+|
T Consensus 3 ~~~~l~~~~~~~v~~~l~~~~~~~l~~--~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f~s 73 (221)
T 1euv_A 3 LVPELNEKDDDQVQKALASRENTQLMN--RDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAFNS 73 (221)
T ss_dssp SSCCCCHHHHHHHHHHHTCSSCCEEEE--ETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEECCT
T ss_pred cCCCCCHHHHHHHHHHhcCCCCeeeec--CCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEEEc
Confidence 577999999999999999977889886 479999999999999999999999999999997642 57999999
Q ss_pred HHHHhhhcCCCCCChhhhHHhhhccccCCCccccceEEEeecc-CCceEEEEEecCCCeEEEEcCCCCC-CH---HHHHh
Q 013302 368 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHK-QIHWCLAVIDRKDKKFQYLDSLKGR-DK---KVLGD 442 (446)
Q Consensus 368 FFytkL~~~k~g~gy~~VkRWtkrkKVg~nLfskD~IfIPIN~-gsHWsLaVId~k~k~I~yyDSLgg~-n~---~vlk~ 442 (446)
|||++|... +|..|+||+++++ .++|++|+||||||. +.||+|+||+++.++|+|||||++. +. .+++.
T Consensus 74 ~f~~~l~~~----~~~~v~rw~~~~~--~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~ 147 (221)
T 1euv_A 74 FFYTNLSER----GYQGVRRWMKRKK--TQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTD 147 (221)
T ss_dssp HHHHHHHHH----TGGGTTTTTGGGT--SCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHH
T ss_pred HHHHHhhhh----ccHHHHHHHHhcc--CCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHH
Confidence 999999876 7999999998644 579999999999998 5999999999999999999999965 33 45666
Q ss_pred hhcC
Q 013302 443 LVFF 446 (446)
Q Consensus 443 L~~y 446 (446)
|++|
T Consensus 148 l~~~ 151 (221)
T 1euv_A 148 LQKY 151 (221)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 4
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.97 E-value=6.4e-31 Score=262.92 Aligned_cols=135 Identities=30% Similarity=0.506 Sum_probs=112.9
Q ss_pred CCCceEeecc---CCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEechHHHHhhhcCCCC----
Q 013302 307 NWRAVLVSHT---ETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKG---- 379 (446)
Q Consensus 307 ~~~~VLv~~~---~~gI~It~~DL~~Lkp~~WLNDeIINFYL~lL~er~~~~p~~~~kvh~FNTFFytkL~~~k~g---- 379 (446)
+-.++|+++. +.|+.|+++||.||.+++||||+||||||+||..+... ....+++|+||||||++|.....+
T Consensus 17 ~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~-~~~~~r~h~FnSFFy~kL~~~~~~~~~~ 95 (323)
T 3eay_A 17 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKAS-DELVERSHIFSSFFYKCLTRKENNLTED 95 (323)
T ss_dssp CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSC-HHHHHTEEECCTHHHHHHSCC-------
T ss_pred CcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhcc-ccccCcEEEEchHHHHHHHhcccccccc
Confidence 5678888763 58999999999999999999999999999999643211 123478999999999999875211
Q ss_pred --------CChhhhHHhhhccccCCCccccceEEEeeccCCceEEEEEecCCC---------------------------
Q 013302 380 --------YDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDK--------------------------- 424 (446)
Q Consensus 380 --------~gy~~VkRWtkrkKVg~nLfskD~IfIPIN~gsHWsLaVId~k~k--------------------------- 424 (446)
++|.+|+|||++ ++||++|+||||||.+.||+|+|||++..
T Consensus 96 ~~~~s~~~~~y~~VrrWtrk----vdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
T 3eay_A 96 NPNLSMAQRRHKRVRTWTRH----INIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKT 171 (323)
T ss_dssp -CCSCHHHHHHTTSGGGGTT----CCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC---------------------
T ss_pred cccchhHHHHHHHHHHHHhh----cccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccc
Confidence 368999999973 58999999999999999999999999742
Q ss_pred -----------------------------------eEEEEcCCCCC-CHHHHHhhhcC
Q 013302 425 -----------------------------------KFQYLDSLKGR-DKKVLGDLVFF 446 (446)
Q Consensus 425 -----------------------------------~I~yyDSLgg~-n~~vlk~L~~y 446 (446)
+|.|||||++. +..+++.|++|
T Consensus 172 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~Y 229 (323)
T 3eay_A 172 IDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREY 229 (323)
T ss_dssp ----------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHH
Confidence 69999999996 58899999876
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.94 E-value=7.9e-27 Score=217.62 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=99.4
Q ss_pred CceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEec---hHHHHhhhcCCCCCChhhhHHhhhcccc
Q 013302 318 TGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFN---TFFYNKLACGNKGYDFRAVKRWTSAKKL 394 (446)
Q Consensus 318 ~gI~It~~DL~~Lkp~~WLNDeIINFYL~lL~er~~~~p~~~~kvh~FN---TFFytkL~~~k~g~gy~~VkRWtkrkKV 394 (446)
.++.|+.+|+.+|.+++||||+|||||++||.++...+ ..+++|+|+ ||||..+. +|+.|++|+++
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~~~p~~s~f~~~~~------~~~~v~~~~~~--- 77 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHD--SSDHVSFISPEVTQFIKCTS------NPAEIAMFLEP--- 77 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGG--GTTTEEEECHHHHHHHHHCC------CHHHHHHHHGG---
T ss_pred CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccC--CCCcEEEEChHHHHHHHhCC------CHHHHHHHhcc---
Confidence 58999999999999999999999999999999987433 246899999 99995542 47899999974
Q ss_pred CCCccccceEEEeecc-------CCceEEEEEecCCCeEEEEcCCCCCCHHHHHhh
Q 013302 395 GYGLIECDKIFVPIHK-------QIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDL 443 (446)
Q Consensus 395 g~nLfskD~IfIPIN~-------gsHWsLaVId~k~k~I~yyDSLgg~n~~vlk~L 443 (446)
.+++++++||||||. ++||+|+||+.++++|+|||||++.+...++.|
T Consensus 78 -~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~~l 132 (212)
T 2bkr_A 78 -LDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQV 132 (212)
T ss_dssp -GTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHH
T ss_pred -cccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHHHH
Confidence 479999999999995 899999999999999999999999987764443
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.85 E-value=7.3e-22 Score=182.24 Aligned_cols=99 Identities=25% Similarity=0.432 Sum_probs=78.0
Q ss_pred CCCcccHHHHHHHHHHHHHhhhcCCccccceEEechHHHHhhhcCCCCCChhhhHHhhhccccCCCccccceEEEeecc-
Q 013302 332 PGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHK- 410 (446)
Q Consensus 332 p~~WLNDeIINFYL~lL~er~~~~p~~~~kvh~FNTFFytkL~~~k~g~gy~~VkRWtkrkKVg~nLfskD~IfIPIN~- 410 (446)
+++||||+||||||+||.++....+. ..++|+|+++++..+... ...++..+.+|++. .++ +|+||||||.
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~-~~~v~f~~p~~~~~l~~~-~~~~~~~~~~~~~~----~~~--~~~i~iPin~~ 72 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPN-AHLLHFADSQVVTMLSSA-DPDQQARAQRLLAG----DDI--PPIVFLPINQP 72 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTT-GGGEEECCHHHHHHTTCS-SHHHHHHHHHHHHS----TTS--CSEEEEEEEET
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccC-cceEEEECHHHHHHHHhC-CHHHHHHHHHHccc----ccc--cCEEEEEEeCC
Confidence 47899999999999999998754432 245999997766555443 11246688888762 233 9999999998
Q ss_pred CCceEEEEEecCCCeE---EEEcCCCCCCHH
Q 013302 411 QIHWCLAVIDRKDKKF---QYLDSLKGRDKK 438 (446)
Q Consensus 411 gsHWsLaVId~k~k~I---~yyDSLgg~n~~ 438 (446)
++||+|+||+.++++| +|||||++.+..
T Consensus 73 ~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~ 103 (186)
T 2oix_A 73 NAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ 103 (186)
T ss_dssp TTEEEEEEEECSSTTSCEEEEECCCSSCCHH
T ss_pred CCccEEEEEECCCCeeeeeEEEcCCCCCCHH
Confidence 8999999999999999 999999998754
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=71.69 E-value=4.8 Score=37.92 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCceEEEEEecCCCeEEEEcCCCCCCHHHHH
Q 013302 411 QIHWCLAVIDRKDKKFQYLDSLKGRDKKVLG 441 (446)
Q Consensus 411 gsHWsLaVId~k~k~I~yyDSLgg~n~~vlk 441 (446)
|.||.-...+|..++++.||-+|-++.+..+
T Consensus 52 GvHWiA~Aw~P~s~~~YmFDPfG~sd~~L~q 82 (204)
T 4ekf_A 52 GVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQ 82 (204)
T ss_dssp CCCEEEEEEETTTTEEEEECTBTTCSHHHHH
T ss_pred ceeEEEeEecCCcceEEEeCCCCCCHHHHHH
Confidence 8999999999999999999999999887655
No 8
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=14.15 E-value=78 Score=30.84 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=17.0
Q ss_pred CCCCcccHHHHHHHHHHHHHh
Q 013302 331 RPGAWLNDEVINVYLGLLKER 351 (446)
Q Consensus 331 kp~~WLNDeIINFYL~lL~er 351 (446)
+++.|++++||..|.++-..-
T Consensus 124 ~~gTWI~~ei~~aY~~LH~~G 144 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRLHELG 144 (256)
T ss_dssp --CTTCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999997653
No 9
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=9.80 E-value=2.1e+02 Score=23.70 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=28.1
Q ss_pred CccccceEEEeeccCCceEEEEEecCCCeEEEE
Q 013302 397 GLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYL 429 (446)
Q Consensus 397 nLfskD~IfIPIN~gsHWsLaVId~k~k~I~yy 429 (446)
.++..|++.+|...|..|.+++||.-.+.+..+
T Consensus 12 ~~~~~D~~~~~~~~g~~yl~~~iD~~Sr~i~~~ 44 (162)
T 1cxq_A 12 QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVT 44 (162)
T ss_dssp CEEEEEEEECGGGTTSCEEEEEEETTTCCEEEE
T ss_pred CEEEeeeeecccCCCCEEEEEEEEcCCCeEEEE
Confidence 567889998888888899999999998887665
No 10
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=8.51 E-value=39 Score=28.37 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=12.8
Q ss_pred ccCCccccccccccC
Q 013302 42 TLISSNSTVSRMSRY 56 (446)
Q Consensus 42 ~~~~~~~~~~~~~~y 56 (446)
-++-|.||||||+|+
T Consensus 67 ~lGiS~stISRi~r~ 81 (101)
T 1jhg_A 67 ELGAGIATITRGSNS 81 (101)
T ss_dssp HHCCCHHHHHHHHHH
T ss_pred HHCCChhhhhHHHHH
Confidence 567899999999875
Done!