BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013303
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 182/372 (48%), Gaps = 32/372 (8%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L N P+E + F Y F
Sbjct: 34 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 86
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
+ + YP E + Y++ + GV + +R +T V + E ++ V+
Sbjct: 87 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
D + EE FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVV 260
+S DI + + I+ A GY W + ER N +
Sbjct: 205 SSSSAEDIGSQCYKYGAKKLISCYRTA------PMGYK--WPENWDERPNLVRVDTENAY 256
Query: 261 FRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFV 317
F +G D I+ CTGY +++PFL + + V +NR+ PL +++ V+ P ++
Sbjct: 257 FADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYI 313
Query: 318 GIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIM 376
G+ + F F+ Q+ + V+ GR+ LPS++EM D A+ K L + YT+
Sbjct: 314 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG 373
Query: 377 DYPQ-LIEYTDW 387
DY Q LI+ TD+
Sbjct: 374 DYIQNLIDMTDY 385
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 181/372 (48%), Gaps = 32/372 (8%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L N P+E + F Y F
Sbjct: 34 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 86
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
+ + YP E + Y++ + GV + +R +T V + E ++ V+
Sbjct: 87 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
D + EE FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVV 260
S DI + + I+ A GY W + ER N +
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTA------PMGYK--WPENWDERPNLVRVDTENAY 256
Query: 261 FRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFV 317
F +G D I+ CTGY +++PFL + + V +NR+ PL +++ V+ P ++
Sbjct: 257 FADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYI 313
Query: 318 GIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIM 376
G+ + F F+ Q+ + V+ GR+ LPS++EM D A+ K L + YT+
Sbjct: 314 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG 373
Query: 377 DYPQ-LIEYTDW 387
DY Q LI+ TD+
Sbjct: 374 DYIQNLIDMTDY 385
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 179/371 (48%), Gaps = 30/371 (8%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L N P+E + F Y F
Sbjct: 39 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 91
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
+ + YP E + Y++ + GV + +R +T V + E S + V +
Sbjct: 92 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
D + FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVVF 261
S DI + + I+ A ++ W + ER N + F
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTAPMGYK--------WPENWDERPNLVRVDTENAYF 262
Query: 262 RNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFVG 318
+G D I+ CTGY +++PFL + + V +NR+ PL +++ V+ P ++G
Sbjct: 263 ADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYIG 319
Query: 319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIMD 377
+ + F F+ Q+ + V+ GR+ LPS++EM D A+ K L + YT+ D
Sbjct: 320 MQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGD 379
Query: 378 YPQ-LIEYTDW 387
Y Q LI+ TD+
Sbjct: 380 YIQNLIDMTDY 390
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 179/371 (48%), Gaps = 30/371 (8%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L + P+E + F Y F
Sbjct: 39 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSDGPKECLEFADYTF-- 91
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
+ + YP E + Y++ + GV + +R +T V + E S + V +
Sbjct: 92 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
D + FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVVF 261
S DI + + I+ A ++ W + ER N + F
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTAPMGYK--------WPENWDERPNLVRVDTENAYF 262
Query: 262 RNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFVG 318
+G D I+ CTGY +++PFL + + V +NR+ PL +++ V+ P ++G
Sbjct: 263 ADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYIG 319
Query: 319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIMD 377
+ + F F+ Q+ + V+ GR+ LPS++EM D A+ K L + YT+ D
Sbjct: 320 MQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGD 379
Query: 378 YPQ-LIEYTDW 387
Y Q LI+ TD+
Sbjct: 380 YIQNLIDMTDY 390
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 178/372 (47%), Gaps = 32/372 (8%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS Y+ L N P+E + F Y F
Sbjct: 34 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSXYRYLWSNGPKECLEFADYTF-- 86
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
+ + YP E + Y++ + GV + +R +T V + E ++ V+
Sbjct: 87 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
D + EE FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVV 260
S DI + + I+ A GY W + ER N +
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTA------PXGY--KWPENWDERPNLVRVDTENAY 256
Query: 261 FRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFV 317
F +G D I+ CTGY +++PFL + + V +NR+ PL +++ V+ P ++
Sbjct: 257 FADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYI 313
Query: 318 GIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIM 376
G + F F+ Q+ + V+ GR+ LPS++E D A+ K L + YT+
Sbjct: 314 GXQDQWYSFNXFDAQAWYARDVIXGRLPLPSKEEXKADSXAWREKELTLVTAEEXYTYQG 373
Query: 377 DYPQ-LIEYTDW 387
DY Q LI+ TD+
Sbjct: 374 DYIQNLIDXTDY 385
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 179/371 (48%), Gaps = 30/371 (8%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L + P+E + F Y F
Sbjct: 39 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSSGPKECLEFADYTF-- 91
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
+ + YP E + Y++ + GV + +R +T V + E S + V +
Sbjct: 92 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
D + FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVVF 261
S DI + + I+ A ++ W + ER N + F
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTAPMGYK--------WPENWDERPNLVRVDTENAYF 262
Query: 262 RNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFVG 318
+G D I+ CTGY +++PFL + + V +NR+ PL +++ V+ P ++G
Sbjct: 263 ADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYIG 319
Query: 319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIMD 377
+ + F F+ Q+ + V+ GR+ LPS++EM D A+ K L + YT+ D
Sbjct: 320 MQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGD 379
Query: 378 YPQ-LIEYTDW 387
Y Q LI+ TD+
Sbjct: 380 YIQNLIDMTDY 390
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 178/371 (47%), Gaps = 30/371 (8%)
Query: 28 VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
+V +EK GG W YT T G+D N PVHSS+Y+ L P+E + F Y F
Sbjct: 39 LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSKGPKECLEFADYTF-- 91
Query: 88 RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
+ + YP E + Y++ + GV + +R +T V + E S + V +
Sbjct: 92 -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
D + FD VV C GHFS P + + G + + G+ +H+H++R F+D+ V+L+G
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVVF 261
S DI + + I+ A ++ W + ER N + F
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTAPMGYK--------WPENWDERPNLVRVDTENAYF 262
Query: 262 RNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFVG 318
+G D I+ CTGY +++PFL + + V +NR+ PL +++ V+ P ++G
Sbjct: 263 ADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYIG 319
Query: 319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIMD 377
+ + F F+ Q+ + V+ GR+ LPS++EM D A+ K L + YT+ D
Sbjct: 320 MQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGD 379
Query: 378 YPQ-LIEYTDW 387
Y Q LI+ TD+
Sbjct: 380 YIQNLIDMTDY 390
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 188/395 (47%), Gaps = 52/395 (13%)
Query: 28 VVVYEKGEQVGGSWIYTSETE-------------SDPLGVDPNRYPVHSS-LYKSLRVNL 73
V ++E+ GG W YTS ++P+ V P PV+ S LY+ L+ N
Sbjct: 36 VTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI-VGPAALPVYPSPLYRDLQTNT 94
Query: 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
P EL G+ F + + +P + Y + +A+ + ++L T+VL+
Sbjct: 95 PIELXGYCDQSFKPQTLQ-------FPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 144
Query: 134 VESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSH 187
+ W V K K + ++ FDAV +CNGH+ VP + + G+D + PG +HS
Sbjct: 145 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSS 204
Query: 188 NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLH 247
+R P F + V+++G +S D+ R L AK S + N L
Sbjct: 205 LFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ-------NESLQ 257
Query: 248 SMVERANEDGT---VVFRNGRVVS-ADVIMHCTGYKYNYPF-----LETNGIVTVDD-NR 297
+ E D T + + G+V+S D +++CTGY Y+ PF L++ +DD +
Sbjct: 258 QVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSH 317
Query: 298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
V +Y+H+F + P L+FVG+ V+PFP + Q+ ++A V SGR+ LPS++E ++
Sbjct: 318 VHNVYQHIFY-IPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQD 376
Query: 358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQC 392
L SG Y H +DYP+ Y + L C
Sbjct: 377 ELXFSL--SGANNXY-HSLDYPKDATYINKLHDWC 408
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 188/395 (47%), Gaps = 52/395 (13%)
Query: 28 VVVYEKGEQVGGSWIYTSETE-------------SDPLGVDPNRYPVHSS-LYKSLRVNL 73
V ++E+ GG W YTS ++P+ V P PV+ S LY+ L+ N
Sbjct: 34 VTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI-VGPAALPVYPSPLYRDLQTNT 92
Query: 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
P EL G+ F + + +P + Y + +A+ + ++L T+VL+
Sbjct: 93 PIELXGYCDQSFKPQTLQ-------FPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 142
Query: 134 VESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSH 187
+ W V K K + ++ FDAV +CNGH+ VP + + G+D + PG +HS
Sbjct: 143 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSS 202
Query: 188 NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLH 247
+R P F + V+++G +S D+ R L AK S + N L
Sbjct: 203 LFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ-------NESLQ 255
Query: 248 SMVERANEDGT---VVFRNGRVVS-ADVIMHCTGYKYNYPF-----LETNGIVTVDD-NR 297
+ E D T + + G+V+S D +++CTGY Y+ PF L++ +DD +
Sbjct: 256 QVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSH 315
Query: 298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
V +Y+H+F + P L+FVG+ V+PFP + Q+ ++A V SGR+ LPS++E ++
Sbjct: 316 VHNVYQHIFY-IPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQD 374
Query: 358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQC 392
L SG Y H +DYP+ Y + L C
Sbjct: 375 ELXFSL--SGANNXY-HSLDYPKDATYINKLHDWC 406
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22 LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
LRE G +V V E VGG W + NRYP +S+
Sbjct: 35 LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCAIESIEY--------- 72
Query: 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
Y F + RY E+LRY+ A +F + + HT V A E +N W
Sbjct: 73 -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
V + D + +++ +G SVP+L PG+ + G H+ N+ P F Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
V +IG +SG+ + +A A E+ + R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22 LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
LRE G +V V E VGG W + NRYP +S+
Sbjct: 35 LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
Y F + RY E+LRY+ A +F + + HT V A E +N W
Sbjct: 73 -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
V + D + +++ +G SVP+L PG+ + G H+ N+ P F Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
V +IG +SG+ + +A A E+ + R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22 LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
LRE G +V V E VGG W + NRYP +S+
Sbjct: 35 LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
Y F + RY E+LRY+ A +F + + HT V A E +N W
Sbjct: 73 -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
V + D + +++ +G SVP+L PG+ + G H+ N+ P F Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
V +IG +SG+ + +A A E+ + R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22 LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
LRE G +V V E VGG W + NRYP +S+
Sbjct: 35 LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
Y F + RY E+LRY+ A +F + + HT V A E +N W
Sbjct: 73 -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
V + D + +++ +G SVP+L PG+ + G H+ N+ P F Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
V +IG +SG+ + +A A E+ + R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 35/213 (16%)
Query: 25 GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYP 84
G V+ E GE VGG+W + NRYP R++ G+ A
Sbjct: 32 GMKVLGIEAGEDVGGTWYW-------------NRYP-------GCRLDTESYAYGYFALK 71
Query: 85 FVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKS 143
+ +E S + P E+LRY+ A V + R +T V AR VE+++ W+V +
Sbjct: 72 GIIPEWEWSENFASQP---EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEV-T 127
Query: 144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-------FQ 196
++VV T ++ G S R+ + GIDS+ G+ HS + F
Sbjct: 128 LDNEEVV---TCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFT 184
Query: 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
+ V +IG A+G+ I A AKE+++ R+
Sbjct: 185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRT 217
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
H +G TV +E VGG W + NRYP R ++
Sbjct: 38 HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
+ P + + + S +Y E+L YL++ A F + + +R T V +A L E
Sbjct: 78 SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
+W V++ + D+V + +VV G S G+D + G +H+ R P+
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
F + V +IG +SG+ +A A+++ + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
H +G TV +E VGG W + NRYP R ++
Sbjct: 38 HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
+ P + + + S +Y E+L YL++ A F + + +R T V +A L E
Sbjct: 78 SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
+W V++ + D+V + +VV G S G+D + G +H+ R P+
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
F + V +IG +SG+ +A A+++ + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
H +G TV +E VGG W + NRYP R ++
Sbjct: 38 HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
+ P + + + S +Y E+L YL++ A F + + +R T V +A L E
Sbjct: 78 SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
+W V++ + D+V + +VV G S G+D + G +H+ R P+
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
F + V +IG +SG+ +A A+++ + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 45/207 (21%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP-----VHSSLYKSLRVNL 73
HEL G T V ++K + GG+W + NRYP S LY R +
Sbjct: 62 HEL---GLTTVGFDKADGPGGTWYW-------------NRYPGALSDTESHLY---RFSF 102
Query: 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR- 132
R+L+ + S Y E+L YL++ F + + + TEV +A
Sbjct: 103 DRDLL------------QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALY 150
Query: 133 LVESNKWKVKSRKKDDVVEEETFDAVVVCN--GHFSVPRLAQVPGIDSWPGKQMHSHNYR 190
L + N W+V + E + A V N G S +PG+D++ G+ +H+ +
Sbjct: 151 LDDENLWEVTTDHG------EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWP 204
Query: 191 IPNPFQDQVVILIGHYASGLDIKRDLA 217
+ V +IG ++G + LA
Sbjct: 205 EGKSLAGRRVGVIGTGSTGQQVITSLA 231
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 45/207 (21%)
Query: 19 HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP-----VHSSLYKSLRVNL 73
HEL G T V ++K + GG+W + NRYP S LY R +
Sbjct: 29 HEL---GLTTVGFDKADGPGGTWYW-------------NRYPGALSDTESHLY---RFSF 69
Query: 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR- 132
R+L+ + S Y E+L YL++ F + + + TEV +A
Sbjct: 70 DRDLL------------QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALY 117
Query: 133 LVESNKWKVKSRKKDDVVEEETFDAVVVCN--GHFSVPRLAQVPGIDSWPGKQMHSHNYR 190
L + N W+V + E + A V N G S +PG+D++ G+ +H+ +
Sbjct: 118 LDDENLWEVTTDHG------EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWP 171
Query: 191 IPNPFQDQVVILIGHYASGLDIKRDLA 217
+ V +IG ++G + LA
Sbjct: 172 EGKSLAGRRVGVIGTGSTGQQVITSLA 198
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 28/164 (17%)
Query: 99 YPGHEEVLRYLQNFAREFGVD-------QVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151
YP EVL YL + +++ + Q V E L + +W +
Sbjct: 72 YPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLAR--------- 122
Query: 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLD 211
AV+ G + + G++S+ G Q+HS +Y P PF V +IG SG
Sbjct: 123 -----AVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQ 177
Query: 212 IKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANE 255
I +++ A+ I HE D++ + ERA E
Sbjct: 178 ILAEVSTVAETTWITQ-------HEPAFLADDVDGRVLFERATE 214
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 89 NYEGSVDLRRYPGHE-EVLRYLQNFAREFGVDQVVR--LHTEVLNARLVESNKWKVKSRK 145
N + +D R P ++ + N A G+D+ R + T V+N +L K +V+
Sbjct: 24 NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY---KNRVEFDS 80
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
D+V EE F +VC F R+ P + W GK ++ H +P+
Sbjct: 81 AIDLVLEE-FSIDIVCLAGFM--RILSGPFVQKWNGKMLNIHPSLLPS 125
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 89 NYEGSVDLRRYPGHE-EVLRYLQNFAREFGVDQVVR--LHTEVLNARLVESNKWKVKSRK 145
N + +D R P ++ + N A G+D+ R + T V+N +L K +V+
Sbjct: 13 NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY---KNRVEFDS 69
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
D+V EE F +VC F R+ P + W GK ++ H +P+
Sbjct: 70 AIDLVLEE-FSIDIVCLAGFM--RILSGPFVQKWNGKMLNIHPSLLPS 114
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 89 NYEGSVDLRRYPGHE-EVLRYLQNFAREFGVDQVVR--LHTEVLNARLVESNKWKVKSRK 145
N + +D R P ++ + N A G+D+ R + T V+N +L K +V+
Sbjct: 13 NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY---KNRVEFDS 69
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193
D+V EE F +VC F R+ P + W GK ++ H +P+
Sbjct: 70 AIDLVLEE-FSIDIVCLAGFM--RILSGPFVQKWNGKMLNIHPSLLPS 114
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 366 SGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITR--PGTYRDE 423
+GKP+ T +D +L Y WL + N + E ++ A TR PG + +
Sbjct: 222 NGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQ 281
Query: 424 WDDEHLVAEANKDFIKY 440
W + + N+D I +
Sbjct: 282 W-----IEKXNEDAIVF 293
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 366 SGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITR--PGTYRDE 423
+GKP+ T +D +L Y WL + N + E ++ A TR PG + +
Sbjct: 222 NGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQ 281
Query: 424 WDDEHLVAEANKDFIKY 440
W + + N+D I +
Sbjct: 282 W-----IEKMNEDAIVF 293
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 121 VVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWP 180
+ R E LNA L +S V+ KD + + D VV+ G +P++ ++ D +
Sbjct: 303 LTRARFEDLNAALFKSTLEPVEQVLKDAKISKSQIDEVVLVGGSTRIPKVQKLLS-DFFD 361
Query: 181 GKQMH 185
GKQ+
Sbjct: 362 GKQLE 366
>pdb|1WNW|A Chain A, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|B Chain B, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|C Chain C, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
Length = 215
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 333 SKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYT----HIMDYPQLIEYTDWL 388
S +++ +L GR+ + + E FY+ LE + R + ++D P L + L
Sbjct: 26 STFMSDLLKGRLGVAEFTRLQEQAWLFYTALEQAVDAVRASGFAESLLD-PAL-NRAEVL 83
Query: 389 AAQCN-CQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIKYTSNKS 445
A + G EWR ++ S ++ R RD D LVA +++Y N S
Sbjct: 84 ARDLDKLNGSSEWRSRITASPAVIDYVNRLEEIRDNVDGPALVAH---HYVRYLGNLS 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,487,037
Number of Sequences: 62578
Number of extensions: 632633
Number of successful extensions: 1851
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 32
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)