Query 013303
Match_columns 446
No_of_seqs 440 out of 3246
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02172 flavin-containing mon 100.0 1.7E-85 3.6E-90 653.4 42.4 437 2-441 10-447 (461)
2 PF00743 FMO-like: Flavin-bind 100.0 4.1E-73 8.9E-78 571.1 23.8 400 2-428 1-484 (531)
3 KOG1399 Flavin-containing mono 100.0 1.8E-67 4E-72 513.5 32.0 421 1-439 5-429 (448)
4 COG2072 TrkA Predicted flavopr 100.0 1.2E-38 2.6E-43 316.3 28.8 200 2-231 8-209 (443)
5 TIGR01292 TRX_reduct thioredox 100.0 6.3E-34 1.4E-38 271.7 28.0 276 3-342 1-298 (300)
6 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.7E-33 5.8E-38 275.0 22.5 293 2-342 4-334 (454)
7 PRK10262 thioredoxin reductase 100.0 3.4E-32 7.3E-37 262.0 26.7 278 2-339 6-309 (321)
8 PLN02507 glutathione reductase 100.0 1E-32 2.2E-37 279.0 23.1 293 3-343 26-363 (499)
9 TIGR01424 gluta_reduc_2 glutat 100.0 1.2E-32 2.5E-37 276.4 22.1 299 2-343 2-326 (446)
10 COG0492 TrxB Thioredoxin reduc 100.0 8.2E-32 1.8E-36 252.5 25.8 257 1-323 2-277 (305)
11 TIGR01421 gluta_reduc_1 glutat 100.0 1.4E-32 2.9E-37 275.6 21.8 289 1-343 1-328 (450)
12 PRK06116 glutathione reductase 100.0 3.4E-32 7.3E-37 273.8 21.4 288 2-343 4-328 (450)
13 PRK15317 alkyl hydroperoxide r 100.0 2.6E-31 5.5E-36 271.0 28.0 275 2-341 211-508 (517)
14 PRK05249 soluble pyridine nucl 100.0 9.2E-32 2E-36 271.7 24.1 295 2-343 5-335 (461)
15 PRK14694 putative mercuric red 100.0 1.6E-31 3.5E-36 269.7 24.5 299 2-343 6-335 (468)
16 PF13738 Pyr_redox_3: Pyridine 100.0 6.1E-33 1.3E-37 249.5 12.6 199 6-231 1-201 (203)
17 PTZ00058 glutathione reductase 100.0 5.8E-32 1.3E-36 274.6 21.1 298 2-343 48-432 (561)
18 PRK06467 dihydrolipoamide dehy 100.0 2.1E-31 4.5E-36 268.6 23.3 294 2-343 4-337 (471)
19 PRK06416 dihydrolipoamide dehy 100.0 4E-31 8.6E-36 267.0 25.4 293 2-344 4-335 (462)
20 PRK06370 mercuric reductase; V 100.0 1.8E-31 4E-36 269.3 22.8 290 2-343 5-334 (463)
21 TIGR03140 AhpF alkyl hydropero 100.0 5.8E-31 1.2E-35 268.0 26.2 275 2-341 212-509 (515)
22 PRK14727 putative mercuric red 100.0 1.8E-31 4E-36 269.7 22.3 301 2-343 16-346 (479)
23 PRK07846 mycothione reductase; 100.0 1.1E-31 2.3E-36 269.0 19.6 295 2-343 1-325 (451)
24 TIGR03143 AhpF_homolog putativ 100.0 2E-30 4.4E-35 265.9 28.5 274 2-341 4-305 (555)
25 TIGR02053 MerA mercuric reduct 100.0 2.1E-31 4.5E-36 269.0 20.7 297 3-343 1-329 (463)
26 TIGR01423 trypano_reduc trypan 100.0 4.6E-31 1E-35 265.4 21.5 302 2-343 3-351 (486)
27 PRK06292 dihydrolipoamide dehy 100.0 3.7E-31 8.1E-36 267.2 20.7 295 2-343 3-331 (460)
28 PRK07818 dihydrolipoamide dehy 100.0 2.1E-30 4.5E-35 261.7 25.5 300 2-344 4-337 (466)
29 PRK13748 putative mercuric red 100.0 1.8E-30 3.9E-35 268.5 24.9 296 2-343 98-428 (561)
30 PRK08010 pyridine nucleotide-d 100.0 3.8E-30 8.3E-35 258.2 26.1 286 2-343 3-317 (441)
31 PLN02546 glutathione reductase 100.0 1.4E-31 3E-36 272.0 15.5 292 2-343 79-413 (558)
32 PRK07845 flavoprotein disulfid 100.0 3.2E-30 7E-35 259.8 24.9 299 2-343 1-337 (466)
33 PRK06115 dihydrolipoamide dehy 100.0 5E-30 1.1E-34 258.4 25.1 297 2-344 3-339 (466)
34 TIGR01438 TGR thioredoxin and 100.0 8.1E-31 1.7E-35 264.3 19.2 295 2-343 2-344 (484)
35 PRK07251 pyridine nucleotide-d 100.0 3.9E-30 8.5E-35 257.9 23.5 286 2-343 3-316 (438)
36 PTZ00052 thioredoxin reductase 100.0 7.4E-31 1.6E-35 265.8 17.7 304 2-343 5-341 (499)
37 PRK05976 dihydrolipoamide dehy 100.0 5E-30 1.1E-34 259.3 23.2 302 2-344 4-344 (472)
38 PRK06327 dihydrolipoamide dehy 100.0 1.1E-29 2.4E-34 256.6 22.6 299 2-344 4-348 (475)
39 TIGR03452 mycothione_red mycot 100.0 9.6E-30 2.1E-34 255.2 21.9 288 2-343 2-328 (452)
40 PRK13512 coenzyme A disulfide 100.0 2.3E-29 5.1E-34 251.7 23.5 272 2-343 1-312 (438)
41 TIGR01350 lipoamide_DH dihydro 100.0 2.7E-29 5.9E-34 253.8 24.0 293 2-344 1-333 (461)
42 PRK04965 NADH:flavorubredoxin 100.0 4.7E-29 1E-33 245.4 22.3 270 1-344 1-303 (377)
43 PTZ00153 lipoamide dehydrogena 100.0 2.4E-29 5.1E-34 258.7 20.8 322 2-343 116-495 (659)
44 PRK06912 acoL dihydrolipoamide 100.0 6.4E-29 1.4E-33 250.2 23.2 293 4-343 2-330 (458)
45 PRK09564 coenzyme A disulfide 100.0 5.8E-29 1.3E-33 250.3 22.6 276 3-344 1-318 (444)
46 KOG0405 Pyridine nucleotide-di 100.0 1.7E-28 3.7E-33 222.2 20.1 302 2-342 20-349 (478)
47 TIGR01316 gltA glutamate synth 100.0 2.4E-28 5.2E-33 244.7 21.5 260 2-341 133-446 (449)
48 PRK14989 nitrite reductase sub 100.0 3E-28 6.6E-33 258.1 21.7 271 2-344 3-311 (847)
49 PRK09853 putative selenate red 100.0 6.5E-28 1.4E-32 253.8 22.8 269 2-345 539-842 (1019)
50 PRK09754 phenylpropionate diox 100.0 5.5E-28 1.2E-32 239.1 21.1 272 2-344 3-310 (396)
51 PRK12831 putative oxidoreducta 100.0 3.4E-28 7.3E-33 244.0 19.1 271 2-341 140-457 (464)
52 PTZ00318 NADH dehydrogenase-li 100.0 5.9E-28 1.3E-32 240.6 20.5 276 2-343 10-346 (424)
53 TIGR02374 nitri_red_nirB nitri 100.0 8.5E-28 1.8E-32 255.0 20.8 269 5-344 1-302 (785)
54 PRK12779 putative bifunctional 100.0 4.6E-27 1E-31 251.3 22.6 269 2-348 306-630 (944)
55 PRK11749 dihydropyrimidine deh 100.0 3.1E-27 6.6E-32 237.9 18.6 260 2-341 140-448 (457)
56 KOG1335 Dihydrolipoamide dehyd 100.0 2.2E-27 4.7E-32 217.7 15.7 311 2-344 39-378 (506)
57 COG1252 Ndh NADH dehydrogenase 100.0 2E-27 4.3E-32 227.9 16.1 274 1-345 2-332 (405)
58 PRK12770 putative glutamate sy 99.9 4E-26 8.8E-31 222.2 21.6 274 2-343 18-348 (352)
59 PRK12778 putative bifunctional 99.9 1.6E-26 3.4E-31 245.5 20.3 262 2-342 431-747 (752)
60 KOG0404 Thioredoxin reductase 99.9 4.1E-26 8.8E-31 194.8 17.5 263 3-322 9-294 (322)
61 TIGR03315 Se_ygfK putative sel 99.9 3.9E-26 8.5E-31 241.7 20.9 263 2-346 537-841 (1012)
62 PRK12814 putative NADPH-depend 99.9 8.5E-26 1.9E-30 235.4 20.6 268 2-341 193-497 (652)
63 TIGR03169 Nterm_to_SelD pyridi 99.9 8.5E-26 1.8E-30 221.5 16.9 263 4-342 1-308 (364)
64 PRK12775 putative trifunctiona 99.9 3.7E-25 8.1E-30 238.8 20.8 275 2-349 430-763 (1006)
65 PRK12810 gltD glutamate syntha 99.9 5.4E-25 1.2E-29 222.0 19.9 267 2-340 143-460 (471)
66 PRK12769 putative oxidoreducta 99.9 2.9E-24 6.3E-29 224.9 23.0 269 2-342 327-649 (654)
67 TIGR01318 gltD_gamma_fam gluta 99.9 2.3E-24 5E-29 216.7 21.1 263 2-341 141-462 (467)
68 PRK13984 putative oxidoreducta 99.9 2.7E-24 5.8E-29 223.8 20.9 260 2-341 283-598 (604)
69 COG3634 AhpF Alkyl hydroperoxi 99.9 3.8E-24 8.1E-29 194.1 17.5 260 2-325 211-493 (520)
70 PF13434 K_oxygenase: L-lysine 99.9 5.9E-26 1.3E-30 217.8 6.0 216 2-231 2-226 (341)
71 TIGR01372 soxA sarcosine oxida 99.9 1.2E-23 2.6E-28 228.4 23.4 279 2-341 163-468 (985)
72 KOG4716 Thioredoxin reductase 99.9 7.1E-24 1.5E-28 191.6 16.3 311 2-342 19-364 (503)
73 PRK12809 putative oxidoreducta 99.9 2.3E-23 5E-28 217.1 20.5 264 2-341 310-631 (639)
74 TIGR03385 CoA_CoA_reduc CoA-di 99.9 3.1E-23 6.8E-28 207.5 19.7 214 110-343 51-304 (427)
75 TIGR01317 GOGAT_sm_gam glutama 99.9 1.4E-22 3.1E-27 204.5 23.5 267 3-341 144-475 (485)
76 PLN02852 ferredoxin-NADP+ redu 99.9 1.5E-22 3.2E-27 201.5 21.4 160 2-231 26-221 (491)
77 PRK12771 putative glutamate sy 99.9 1.3E-22 2.9E-27 209.1 19.1 259 2-340 137-439 (564)
78 KOG1336 Monodehydroascorbate/f 99.9 1.2E-22 2.6E-27 193.3 16.1 244 2-321 74-350 (478)
79 KOG2495 NADH-dehydrogenase (ub 99.9 1E-21 2.3E-26 183.5 14.4 275 2-342 55-394 (491)
80 COG1251 NirB NAD(P)H-nitrite r 99.9 5E-21 1.1E-25 190.4 17.0 273 2-345 3-308 (793)
81 COG3486 IucD Lysine/ornithine 99.9 5E-20 1.1E-24 172.0 21.3 325 2-350 5-420 (436)
82 COG0493 GltD NADPH-dependent g 99.8 8.4E-18 1.8E-22 165.9 13.7 157 2-228 123-294 (457)
83 PTZ00188 adrenodoxin reductase 99.7 2.1E-16 4.5E-21 155.0 21.5 43 2-44 39-82 (506)
84 PRK06567 putative bifunctional 99.7 4.5E-17 9.8E-22 170.2 16.2 39 2-40 383-421 (1028)
85 KOG0399 Glutamate synthase [Am 99.7 2.1E-16 4.5E-21 161.6 17.4 284 2-354 1785-2133(2142)
86 KOG1800 Ferredoxin/adrenodoxin 99.7 9.6E-16 2.1E-20 141.5 17.4 160 2-231 20-215 (468)
87 COG4529 Uncharacterized protei 99.7 2E-14 4.3E-19 138.5 24.6 204 2-231 1-232 (474)
88 COG0446 HcaD Uncharacterized N 99.7 1.7E-15 3.7E-20 151.1 16.3 204 114-343 64-310 (415)
89 PRK09897 hypothetical protein; 99.6 1.3E-14 2.8E-19 146.6 15.0 199 2-219 1-213 (534)
90 COG1148 HdrA Heterodisulfide r 99.6 1.4E-13 3.1E-18 131.0 20.0 41 2-42 124-164 (622)
91 COG2081 Predicted flavoprotein 99.6 8E-15 1.7E-19 137.9 11.4 149 1-170 2-171 (408)
92 PF07992 Pyr_redox_2: Pyridine 99.6 4.2E-15 9E-20 133.1 8.1 148 4-204 1-159 (201)
93 KOG1346 Programmed cell death 99.5 7.9E-14 1.7E-18 130.1 10.3 210 117-343 271-519 (659)
94 PF03486 HI0933_like: HI0933-l 99.4 2.2E-13 4.8E-18 133.6 9.4 153 3-169 1-169 (409)
95 PF13454 NAD_binding_9: FAD-NA 99.4 6.3E-13 1.4E-17 113.7 10.6 134 6-164 1-155 (156)
96 KOG2755 Oxidoreductase [Genera 99.3 7.9E-12 1.7E-16 110.3 11.1 82 137-230 79-165 (334)
97 PRK06847 hypothetical protein; 99.3 4.1E-11 8.8E-16 118.1 17.6 157 2-169 4-166 (375)
98 PRK04176 ribulose-1,5-biphosph 99.3 1.7E-11 3.7E-16 113.4 11.9 141 2-167 25-174 (257)
99 TIGR02032 GG-red-SF geranylger 99.3 2.3E-11 4.9E-16 115.6 11.9 146 3-166 1-148 (295)
100 TIGR02023 BchP-ChlP geranylger 99.3 6.4E-11 1.4E-15 117.1 14.7 149 3-168 1-157 (388)
101 TIGR00292 thiazole biosynthesi 99.3 3.9E-11 8.4E-16 110.6 11.7 138 2-166 21-170 (254)
102 COG0644 FixC Dehydrogenases (f 99.3 4.9E-11 1.1E-15 118.2 12.8 146 1-164 2-150 (396)
103 PRK08244 hypothetical protein; 99.3 9.8E-11 2.1E-15 119.6 15.1 155 1-168 1-161 (493)
104 PRK10157 putative oxidoreducta 99.2 7.6E-11 1.6E-15 117.9 13.3 153 2-166 5-164 (428)
105 PRK06183 mhpA 3-(3-hydroxyphen 99.2 1.8E-10 3.9E-15 118.8 15.0 162 2-169 10-177 (538)
106 PRK06834 hypothetical protein; 99.2 1.9E-10 4E-15 116.7 13.9 141 2-167 3-157 (488)
107 TIGR02028 ChlP geranylgeranyl 99.2 1.7E-10 3.8E-15 114.2 13.1 152 3-166 1-160 (398)
108 PRK05714 2-octaprenyl-3-methyl 99.2 5.2E-11 1.1E-15 118.6 9.4 158 1-169 1-171 (405)
109 TIGR01988 Ubi-OHases Ubiquinon 99.2 1.2E-10 2.5E-15 115.2 10.9 151 4-167 1-164 (385)
110 PRK06185 hypothetical protein; 99.2 1.4E-10 3.1E-15 115.5 11.3 158 2-167 6-170 (407)
111 TIGR01790 carotene-cycl lycope 99.2 2.3E-10 5E-15 113.3 12.6 140 4-166 1-141 (388)
112 PLN02463 lycopene beta cyclase 99.2 1.2E-10 2.6E-15 116.1 10.5 138 2-167 28-170 (447)
113 PRK08773 2-octaprenyl-3-methyl 99.2 1.2E-10 2.7E-15 115.4 10.5 153 2-167 6-170 (392)
114 COG1635 THI4 Ribulose 1,5-bisp 99.2 2.2E-10 4.8E-15 99.0 10.3 136 3-164 31-176 (262)
115 PRK10015 oxidoreductase; Provi 99.2 4.5E-10 9.8E-15 112.2 14.3 153 2-166 5-164 (429)
116 PRK11445 putative oxidoreducta 99.2 3E-10 6.5E-15 110.7 12.6 151 2-169 1-160 (351)
117 PRK07364 2-octaprenyl-6-methox 99.2 1.9E-10 4.1E-15 115.0 11.5 157 2-169 18-184 (415)
118 PRK08163 salicylate hydroxylas 99.2 1.7E-10 3.7E-15 114.5 10.8 159 2-169 4-169 (396)
119 PF01494 FAD_binding_3: FAD bi 99.1 1.5E-10 3.2E-15 112.9 9.9 157 3-169 2-175 (356)
120 PRK07045 putative monooxygenas 99.1 2.8E-10 6.1E-15 112.7 11.6 157 2-169 5-168 (388)
121 COG3380 Predicted NAD/FAD-depe 99.1 1.6E-10 3.5E-15 102.9 8.6 149 2-163 1-157 (331)
122 TIGR00275 flavoprotein, HI0933 99.1 1.3E-10 2.9E-15 115.0 9.1 150 6-168 1-162 (400)
123 PRK09126 hypothetical protein; 99.1 6.4E-10 1.4E-14 110.3 13.5 152 1-167 2-168 (392)
124 COG0654 UbiH 2-polyprenyl-6-me 99.1 4.7E-10 1E-14 110.9 12.4 157 1-169 1-165 (387)
125 PRK08013 oxidoreductase; Provi 99.1 7.6E-10 1.6E-14 110.0 13.6 153 2-169 3-171 (400)
126 PRK07333 2-octaprenyl-6-methox 99.1 2.2E-10 4.8E-15 114.0 9.8 157 2-167 1-168 (403)
127 PRK06184 hypothetical protein; 99.1 1.4E-09 3E-14 111.3 15.8 161 2-168 3-170 (502)
128 PF05834 Lycopene_cycl: Lycope 99.1 5.7E-10 1.2E-14 109.6 12.4 134 4-164 1-140 (374)
129 PRK07608 ubiquinone biosynthes 99.1 7.1E-10 1.5E-14 109.8 13.1 151 1-167 4-168 (388)
130 PLN00093 geranylgeranyl diphos 99.1 6.8E-10 1.5E-14 111.2 12.8 150 1-167 38-200 (450)
131 PRK06753 hypothetical protein; 99.1 6.6E-10 1.4E-14 109.4 12.6 149 3-169 1-155 (373)
132 PRK07588 hypothetical protein; 99.1 4E-10 8.7E-15 111.7 10.9 157 3-170 1-162 (391)
133 PRK06126 hypothetical protein; 99.1 2.9E-09 6.4E-14 110.1 17.5 164 2-168 7-190 (545)
134 PRK07538 hypothetical protein; 99.1 1.9E-09 4.1E-14 107.6 15.6 160 3-169 1-168 (413)
135 PRK08849 2-octaprenyl-3-methyl 99.1 5E-10 1.1E-14 110.7 10.8 155 2-169 3-170 (384)
136 TIGR01984 UbiH 2-polyprenyl-6- 99.1 2.1E-10 4.5E-15 113.4 8.1 149 4-167 1-163 (382)
137 PRK07236 hypothetical protein; 99.1 1.3E-09 2.9E-14 107.7 13.8 146 2-169 6-157 (386)
138 PRK07494 2-octaprenyl-6-methox 99.1 9.1E-10 2E-14 109.1 12.5 155 3-167 8-168 (388)
139 PRK05329 anaerobic glycerol-3- 99.1 2.3E-09 5.1E-14 105.7 14.6 82 200-281 218-319 (422)
140 PRK06475 salicylate hydroxylas 99.1 1.6E-09 3.4E-14 107.8 13.5 163 1-170 1-171 (400)
141 PRK07190 hypothetical protein; 99.1 1.9E-09 4.2E-14 109.3 14.0 157 2-168 5-167 (487)
142 PLN02697 lycopene epsilon cycl 99.1 1E-09 2.2E-14 111.3 11.6 137 2-166 108-248 (529)
143 PRK08132 FAD-dependent oxidore 99.1 1.7E-09 3.7E-14 111.8 13.6 155 2-168 23-187 (547)
144 PRK08020 ubiF 2-octaprenyl-3-m 99.1 1.2E-09 2.5E-14 108.4 11.6 153 2-167 5-170 (391)
145 PRK08243 4-hydroxybenzoate 3-m 99.0 3.8E-09 8.3E-14 104.7 14.3 159 1-169 1-166 (392)
146 PLN02661 Putative thiazole syn 99.0 2.5E-09 5.4E-14 101.5 12.2 139 2-166 92-244 (357)
147 PRK06617 2-octaprenyl-6-methox 99.0 1.5E-09 3.3E-14 106.8 10.9 151 2-169 1-163 (374)
148 KOG3851 Sulfide:quinone oxidor 99.0 5.6E-09 1.2E-13 95.1 13.3 253 3-325 40-338 (446)
149 PF01946 Thi4: Thi4 family; PD 99.0 2.4E-10 5.2E-15 99.5 3.8 138 2-165 17-164 (230)
150 PRK05868 hypothetical protein; 99.0 4.9E-09 1.1E-13 103.0 13.5 158 2-170 1-164 (372)
151 PRK05732 2-octaprenyl-6-methox 99.0 1.2E-09 2.5E-14 108.5 9.1 153 2-167 3-170 (395)
152 PF00070 Pyr_redox: Pyridine n 99.0 6E-09 1.3E-13 78.2 10.7 80 4-146 1-80 (80)
153 PRK08850 2-octaprenyl-6-methox 99.0 2.1E-09 4.5E-14 107.1 9.8 154 2-168 4-170 (405)
154 PF01266 DAO: FAD dependent ox 99.0 2.3E-09 5E-14 104.5 10.0 61 100-168 144-205 (358)
155 PRK06996 hypothetical protein; 99.0 6E-09 1.3E-13 103.5 12.8 145 2-164 11-172 (398)
156 TIGR03219 salicylate_mono sali 99.0 6.7E-09 1.4E-13 103.8 13.0 148 3-168 1-161 (414)
157 TIGR02360 pbenz_hydroxyl 4-hyd 99.0 9.2E-09 2E-13 101.8 13.8 158 1-169 1-166 (390)
158 COG0579 Predicted dehydrogenas 99.0 9.3E-09 2E-13 100.3 13.1 162 1-168 2-213 (429)
159 PRK11728 hydroxyglutarate oxid 98.9 7.9E-09 1.7E-13 102.5 12.9 59 100-166 146-204 (393)
160 TIGR01813 flavo_cyto_c flavocy 98.9 2.3E-08 5.1E-13 100.6 16.1 161 4-167 1-193 (439)
161 PF12831 FAD_oxidored: FAD dep 98.9 2.1E-10 4.6E-15 114.6 1.0 148 4-164 1-148 (428)
162 TIGR01989 COQ6 Ubiquinone bios 98.9 3.5E-09 7.5E-14 106.4 9.4 155 3-170 1-187 (437)
163 PRK12266 glpD glycerol-3-phosp 98.9 1.8E-08 3.9E-13 102.9 14.0 64 102-168 154-218 (508)
164 PRK12409 D-amino acid dehydrog 98.9 2.1E-08 4.5E-13 100.1 13.7 64 101-167 195-259 (410)
165 PRK08274 tricarballylate dehyd 98.9 1.5E-08 3.2E-13 102.9 12.1 159 2-167 4-193 (466)
166 PRK13369 glycerol-3-phosphate 98.9 1.6E-08 3.4E-13 103.4 12.3 65 101-168 153-217 (502)
167 PRK08294 phenol 2-monooxygenas 98.9 3.6E-08 7.9E-13 103.0 15.2 163 2-170 32-214 (634)
168 PRK11259 solA N-methyltryptoph 98.9 2.7E-08 5.9E-13 98.0 13.0 65 99-171 145-209 (376)
169 PRK05192 tRNA uridine 5-carbox 98.8 1.3E-08 2.9E-13 103.4 10.4 142 2-166 4-157 (618)
170 PRK06481 fumarate reductase fl 98.8 8.2E-08 1.8E-12 98.1 16.1 162 2-167 61-252 (506)
171 PLN02985 squalene monooxygenas 98.8 2.8E-08 6E-13 101.3 12.2 161 2-169 43-211 (514)
172 PRK05976 dihydrolipoamide dehy 98.8 1.2E-07 2.5E-12 96.4 16.6 141 2-211 180-324 (472)
173 PRK04965 NADH:flavorubredoxin 98.8 6.3E-08 1.4E-12 95.5 14.2 101 2-170 141-241 (377)
174 PF13450 NAD_binding_8: NAD(P) 98.8 4.8E-09 1E-13 75.7 4.5 38 7-44 1-38 (68)
175 PRK01747 mnmC bifunctional tRN 98.8 2.1E-08 4.6E-13 105.9 11.1 62 99-168 404-465 (662)
176 TIGR01377 soxA_mon sarcosine o 98.8 5.1E-08 1.1E-12 96.2 12.9 62 99-168 141-202 (380)
177 COG1249 Lpd Pyruvate/2-oxoglut 98.8 8.2E-08 1.8E-12 95.3 14.2 104 2-172 173-276 (454)
178 TIGR01350 lipoamide_DH dihydro 98.8 1E-07 2.3E-12 96.6 15.4 136 2-208 170-310 (461)
179 PRK06416 dihydrolipoamide dehy 98.8 1.9E-07 4.2E-12 94.6 16.5 105 2-172 172-276 (462)
180 TIGR01789 lycopene_cycl lycope 98.8 5E-08 1.1E-12 95.6 11.7 151 4-185 1-155 (370)
181 TIGR01320 mal_quin_oxido malat 98.8 7.4E-08 1.6E-12 97.5 13.1 67 100-168 175-242 (483)
182 PRK07121 hypothetical protein; 98.8 3.2E-08 6.8E-13 101.0 10.3 64 101-167 175-240 (492)
183 PLN02927 antheraxanthin epoxid 98.7 3.5E-08 7.6E-13 102.0 9.8 156 2-169 81-251 (668)
184 TIGR02053 MerA mercuric reduct 98.7 4.2E-07 9.1E-12 92.2 17.1 105 2-172 166-270 (463)
185 PRK06327 dihydrolipoamide dehy 98.7 2E-07 4.3E-12 94.7 14.6 106 2-172 183-288 (475)
186 PRK06912 acoL dihydrolipoamide 98.7 2.7E-07 5.8E-12 93.4 15.4 103 2-172 170-272 (458)
187 PRK13339 malate:quinone oxidor 98.7 1.9E-07 4.1E-12 94.0 13.9 66 100-167 181-248 (497)
188 PRK07818 dihydrolipoamide dehy 98.7 2.3E-07 5E-12 94.1 14.8 105 2-171 172-276 (466)
189 PRK09754 phenylpropionate diox 98.7 1.1E-07 2.4E-12 94.3 12.0 100 2-170 144-243 (396)
190 PRK07251 pyridine nucleotide-d 98.7 1.6E-07 3.5E-12 94.5 13.2 100 2-171 157-256 (438)
191 PF00890 FAD_binding_2: FAD bi 98.7 1.4E-07 3.1E-12 94.3 12.8 64 101-167 139-204 (417)
192 PRK08401 L-aspartate oxidase; 98.7 9.6E-08 2.1E-12 96.6 11.5 158 2-168 1-177 (466)
193 KOG2820 FAD-dependent oxidored 98.7 4.8E-08 1E-12 89.9 8.2 167 2-175 7-221 (399)
194 PRK07803 sdhA succinate dehydr 98.7 4.7E-08 1E-12 102.1 9.3 38 2-39 8-45 (626)
195 PRK06116 glutathione reductase 98.7 2.2E-07 4.7E-12 93.9 13.8 103 2-172 167-269 (450)
196 PRK11101 glpA sn-glycerol-3-ph 98.7 2.7E-07 5.8E-12 95.2 14.1 64 100-166 146-211 (546)
197 PRK05249 soluble pyridine nucl 98.7 2.7E-07 5.8E-12 93.6 13.5 101 2-171 175-275 (461)
198 TIGR00551 nadB L-aspartate oxi 98.7 1.2E-07 2.6E-12 96.6 10.9 161 2-167 2-190 (488)
199 PTZ00383 malate:quinone oxidor 98.7 1.9E-07 4.1E-12 94.4 12.1 64 100-168 208-275 (497)
200 PRK06263 sdhA succinate dehydr 98.7 7.2E-08 1.6E-12 99.5 9.0 65 101-167 132-198 (543)
201 TIGR00136 gidA glucose-inhibit 98.7 3.1E-07 6.8E-12 93.4 13.2 150 3-166 1-154 (617)
202 PRK06370 mercuric reductase; V 98.7 4.8E-07 1E-11 91.7 14.7 104 2-171 171-274 (463)
203 PRK06467 dihydrolipoamide dehy 98.6 4.1E-07 8.9E-12 92.2 14.1 105 2-172 174-278 (471)
204 COG0578 GlpA Glycerol-3-phosph 98.6 3.3E-07 7.1E-12 91.5 12.8 58 107-167 168-226 (532)
205 PRK06452 sdhA succinate dehydr 98.6 2.1E-07 4.5E-12 96.3 11.8 162 2-166 5-198 (566)
206 PRK05257 malate:quinone oxidor 98.6 3.8E-07 8.2E-12 92.5 13.3 66 101-168 181-248 (494)
207 PRK07804 L-aspartate oxidase; 98.6 1.5E-07 3.2E-12 96.9 10.3 164 2-167 16-211 (541)
208 PRK06115 dihydrolipoamide dehy 98.6 5.9E-07 1.3E-11 91.0 14.5 105 2-171 174-279 (466)
209 TIGR01424 gluta_reduc_2 glutat 98.6 4.4E-07 9.5E-12 91.5 13.5 101 2-171 166-266 (446)
210 TIGR03329 Phn_aa_oxid putative 98.6 2.9E-07 6.4E-12 93.1 12.1 63 99-170 179-241 (460)
211 PRK00711 D-amino acid dehydrog 98.6 3.8E-07 8.2E-12 91.2 12.7 61 100-168 198-259 (416)
212 TIGR01812 sdhA_frdA_Gneg succi 98.6 1.6E-07 3.5E-12 97.6 10.2 64 101-167 127-192 (566)
213 PF01134 GIDA: Glucose inhibit 98.6 2.6E-07 5.6E-12 89.3 10.6 128 4-164 1-150 (392)
214 TIGR01421 gluta_reduc_1 glutat 98.6 5.6E-07 1.2E-11 90.7 13.2 103 2-171 166-268 (450)
215 PRK07846 mycothione reductase; 98.6 1.1E-06 2.5E-11 88.5 15.4 130 2-205 166-300 (451)
216 PRK06175 L-aspartate oxidase; 98.6 1.5E-07 3.1E-12 94.3 8.8 38 2-40 4-41 (433)
217 TIGR03364 HpnW_proposed FAD de 98.6 4.6E-07 1E-11 88.9 12.3 34 3-36 1-34 (365)
218 PRK08255 salicylyl-CoA 5-hydro 98.6 4.1E-08 8.9E-13 105.0 5.1 135 3-169 1-144 (765)
219 PTZ00139 Succinate dehydrogena 98.6 2.1E-07 4.7E-12 97.0 10.2 67 101-169 164-232 (617)
220 PRK07057 sdhA succinate dehydr 98.6 3E-07 6.5E-12 95.6 11.2 66 101-168 146-213 (591)
221 PRK07573 sdhA succinate dehydr 98.6 1.9E-07 4.2E-12 97.6 9.8 37 2-38 35-71 (640)
222 KOG1335 Dihydrolipoamide dehyd 98.6 4.4E-07 9.5E-12 85.0 10.9 106 2-171 211-317 (506)
223 KOG0029 Amine oxidase [Seconda 98.6 6.7E-08 1.4E-12 97.3 5.8 43 2-44 15-57 (501)
224 PRK08275 putative oxidoreducta 98.6 2.7E-07 5.9E-12 95.4 10.2 65 101-167 135-201 (554)
225 PLN02507 glutathione reductase 98.6 8.1E-07 1.8E-11 90.6 13.5 102 2-172 203-304 (499)
226 PRK12845 3-ketosteroid-delta-1 98.6 7.1E-07 1.5E-11 92.0 13.2 42 2-44 16-57 (564)
227 PRK06854 adenylylsulfate reduc 98.6 4E-07 8.7E-12 94.9 11.2 161 3-167 12-196 (608)
228 PRK09078 sdhA succinate dehydr 98.6 2.9E-07 6.3E-12 95.8 10.1 66 101-168 147-214 (598)
229 PRK08958 sdhA succinate dehydr 98.6 2.9E-07 6.4E-12 95.5 10.1 164 2-167 7-207 (588)
230 PRK12835 3-ketosteroid-delta-1 98.5 5.2E-07 1.1E-11 93.6 11.8 41 2-42 11-51 (584)
231 PRK07845 flavoprotein disulfid 98.5 9E-07 2E-11 89.7 13.2 102 2-172 177-278 (466)
232 PRK06134 putative FAD-binding 98.5 2.5E-06 5.5E-11 88.7 16.6 43 2-44 12-54 (581)
233 PRK09564 coenzyme A disulfide 98.5 8.1E-07 1.7E-11 89.7 12.4 100 3-171 150-249 (444)
234 PLN00128 Succinate dehydrogena 98.5 5.8E-07 1.3E-11 93.8 11.5 165 3-169 51-253 (635)
235 PLN02464 glycerol-3-phosphate 98.5 7.6E-07 1.6E-11 93.0 12.2 66 100-167 229-297 (627)
236 PRK08071 L-aspartate oxidase; 98.5 3.2E-07 6.9E-12 93.8 9.1 161 2-167 3-191 (510)
237 COG1252 Ndh NADH dehydrogenase 98.5 9.7E-07 2.1E-11 85.7 11.8 129 4-205 157-299 (405)
238 PRK08010 pyridine nucleotide-d 98.5 1.3E-06 2.8E-11 88.0 13.4 100 2-171 158-257 (441)
239 PRK07208 hypothetical protein; 98.5 2.7E-07 5.9E-12 94.0 8.2 42 2-43 4-45 (479)
240 TIGR03385 CoA_CoA_reduc CoA-di 98.5 1.4E-06 3E-11 87.5 13.1 99 3-171 138-236 (427)
241 PRK05945 sdhA succinate dehydr 98.5 4E-07 8.6E-12 94.5 9.4 64 101-167 133-198 (575)
242 PTZ00367 squalene epoxidase; P 98.5 6E-07 1.3E-11 92.2 10.5 34 2-35 33-66 (567)
243 TIGR03452 mycothione_red mycot 98.5 1.5E-06 3.3E-11 87.7 13.2 101 2-172 169-269 (452)
244 PTZ00058 glutathione reductase 98.5 1.7E-06 3.8E-11 88.8 13.7 103 2-171 237-339 (561)
245 COG0665 DadA Glycine/D-amino a 98.5 1.4E-06 3E-11 86.3 12.7 62 100-168 153-214 (387)
246 PRK07843 3-ketosteroid-delta-1 98.5 1.7E-06 3.7E-11 89.4 13.8 42 2-43 7-48 (557)
247 TIGR01423 trypano_reduc trypan 98.5 1.6E-06 3.4E-11 88.0 13.2 102 2-171 187-291 (486)
248 PRK14694 putative mercuric red 98.5 4.9E-06 1.1E-10 84.5 16.6 99 2-171 178-276 (468)
249 KOG2415 Electron transfer flav 98.5 1.2E-06 2.5E-11 83.0 10.9 153 3-164 77-254 (621)
250 PRK06292 dihydrolipoamide dehy 98.5 2.2E-06 4.7E-11 86.9 14.1 104 2-172 169-272 (460)
251 PRK12844 3-ketosteroid-delta-1 98.5 6.4E-07 1.4E-11 92.5 10.3 43 2-44 6-48 (557)
252 PRK12842 putative succinate de 98.5 2.1E-06 4.6E-11 89.2 14.2 42 2-43 9-50 (574)
253 PRK12839 hypothetical protein; 98.5 5.8E-06 1.2E-10 85.6 17.1 43 2-44 8-50 (572)
254 PRK13512 coenzyme A disulfide 98.5 1.1E-06 2.4E-11 88.3 11.6 96 3-171 149-244 (438)
255 COG0446 HcaD Uncharacterized N 98.5 1.3E-06 2.9E-11 87.0 12.0 99 3-169 137-238 (415)
256 PRK08205 sdhA succinate dehydr 98.5 8.7E-07 1.9E-11 92.1 10.8 65 101-167 138-207 (583)
257 PF06039 Mqo: Malate:quinone o 98.5 1.3E-06 2.8E-11 84.8 11.0 65 103-169 181-247 (488)
258 PRK06069 sdhA succinate dehydr 98.4 6.7E-07 1.5E-11 93.0 9.6 40 2-41 5-47 (577)
259 PRK14727 putative mercuric red 98.4 2.9E-06 6.4E-11 86.3 13.9 99 2-171 188-286 (479)
260 COG2907 Predicted NAD/FAD-bind 98.4 1.2E-06 2.7E-11 81.1 9.9 41 2-43 8-48 (447)
261 PRK08641 sdhA succinate dehydr 98.4 9.9E-07 2.1E-11 91.7 10.5 38 2-39 3-40 (589)
262 PLN02815 L-aspartate oxidase 98.4 8E-07 1.7E-11 92.0 9.8 163 2-167 29-223 (594)
263 KOG2404 Fumarate reductase, fl 98.4 9E-07 2E-11 81.0 8.8 164 4-167 11-207 (477)
264 COG1233 Phytoene dehydrogenase 98.4 2.4E-07 5.1E-12 94.2 5.6 43 2-44 3-45 (487)
265 PRK09231 fumarate reductase fl 98.4 9.2E-07 2E-11 91.8 9.8 164 2-168 4-198 (582)
266 KOG2614 Kynurenine 3-monooxyge 98.4 1.6E-06 3.6E-11 82.5 10.5 37 1-37 1-37 (420)
267 PF00070 Pyr_redox: Pyridine n 98.4 2.1E-07 4.6E-12 69.8 3.2 66 199-264 1-80 (80)
268 TIGR02374 nitri_red_nirB nitri 98.4 2E-06 4.2E-11 92.4 11.8 102 2-171 140-241 (785)
269 PRK12843 putative FAD-binding 98.4 2.9E-06 6.2E-11 88.2 12.7 43 2-44 16-58 (578)
270 TIGR01176 fum_red_Fp fumarate 98.4 1.6E-06 3.4E-11 90.0 10.6 163 2-167 3-196 (580)
271 PTZ00306 NADH-dependent fumara 98.4 5.6E-06 1.2E-10 92.5 15.7 40 2-41 409-448 (1167)
272 PRK13748 putative mercuric red 98.4 3.9E-06 8.5E-11 87.3 13.6 100 2-172 270-369 (561)
273 TIGR01438 TGR thioredoxin and 98.4 4.7E-06 1E-10 84.7 13.7 102 3-171 181-282 (484)
274 PRK11883 protoporphyrinogen ox 98.4 4.3E-07 9.4E-12 91.8 5.8 41 3-43 1-43 (451)
275 COG1232 HemY Protoporphyrinoge 98.4 6.8E-07 1.5E-11 88.0 6.8 41 3-43 1-43 (444)
276 PRK12837 3-ketosteroid-delta-1 98.4 3.2E-06 6.9E-11 86.7 12.0 41 2-43 7-47 (513)
277 PTZ00052 thioredoxin reductase 98.4 5.2E-06 1.1E-10 84.8 13.4 101 2-172 182-282 (499)
278 TIGR01811 sdhA_Bsu succinate d 98.4 1.5E-06 3.2E-11 90.5 9.5 34 5-38 1-34 (603)
279 PRK07395 L-aspartate oxidase; 98.4 9.3E-07 2E-11 91.1 7.9 38 2-40 9-46 (553)
280 TIGR01373 soxB sarcosine oxida 98.4 7E-06 1.5E-10 81.8 13.9 62 99-167 179-241 (407)
281 PRK07512 L-aspartate oxidase; 98.4 1.1E-06 2.3E-11 90.1 8.1 63 101-167 134-198 (513)
282 PTZ00153 lipoamide dehydrogena 98.3 1.5E-05 3.2E-10 83.3 16.4 107 2-172 312-431 (659)
283 PLN02546 glutathione reductase 98.3 5.1E-06 1.1E-10 85.4 12.6 102 2-171 252-353 (558)
284 PRK14989 nitrite reductase sub 98.3 4.3E-06 9.3E-11 90.0 12.4 102 2-170 145-247 (847)
285 TIGR02485 CobZ_N-term precorri 98.3 2.8E-06 6.2E-11 85.3 10.3 63 101-166 121-183 (432)
286 PRK09077 L-aspartate oxidase; 98.3 3.1E-06 6.8E-11 87.1 10.7 38 2-40 8-45 (536)
287 PLN02268 probable polyamine ox 98.3 6.5E-07 1.4E-11 90.1 5.5 42 3-44 1-42 (435)
288 PRK08626 fumarate reductase fl 98.3 2.1E-06 4.6E-11 90.1 9.5 64 101-167 156-221 (657)
289 TIGR00562 proto_IX_ox protopor 98.3 8.4E-07 1.8E-11 90.0 5.8 42 2-43 2-47 (462)
290 PTZ00318 NADH dehydrogenase-li 98.3 1.6E-05 3.4E-10 79.7 14.5 94 3-169 174-281 (424)
291 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 3.4E-06 7.4E-11 82.9 9.3 37 3-39 1-37 (433)
292 PRK07233 hypothetical protein; 98.3 8.9E-07 1.9E-11 89.0 5.4 40 4-43 1-40 (434)
293 COG3349 Uncharacterized conser 98.3 9.7E-07 2.1E-11 86.8 5.3 41 3-43 1-41 (485)
294 KOG1298 Squalene monooxygenase 98.3 3.9E-06 8.5E-11 78.8 8.9 33 2-34 45-77 (509)
295 PRK12416 protoporphyrinogen ox 98.3 1.1E-06 2.3E-11 89.3 5.6 42 2-43 1-48 (463)
296 TIGR00031 UDP-GALP_mutase UDP- 98.3 1.2E-06 2.7E-11 85.2 5.6 42 2-43 1-42 (377)
297 PRK10262 thioredoxin reductase 98.2 1.3E-05 2.7E-10 77.3 12.4 104 2-171 146-251 (321)
298 PLN02576 protoporphyrinogen ox 98.2 1.4E-06 3.1E-11 89.1 5.5 42 2-43 12-54 (496)
299 TIGR02733 desat_CrtD C-3',4' d 98.2 1.5E-06 3.3E-11 88.9 5.3 42 3-44 2-43 (492)
300 PF04820 Trp_halogenase: Trypt 98.2 4.4E-06 9.5E-11 84.0 8.2 59 100-164 151-209 (454)
301 PLN02568 polyamine oxidase 98.2 2.4E-06 5.2E-11 87.6 5.9 43 2-44 5-52 (539)
302 KOG0685 Flavin-containing amin 98.2 2.8E-06 6E-11 82.2 5.7 42 2-43 21-63 (498)
303 TIGR03140 AhpF alkyl hydropero 98.1 2.1E-05 4.6E-10 80.7 12.4 101 2-172 352-454 (515)
304 TIGR02734 crtI_fam phytoene de 98.1 2E-06 4.4E-11 88.1 4.9 40 5-44 1-40 (502)
305 TIGR01292 TRX_reduct thioredox 98.1 3.4E-05 7.3E-10 73.4 12.1 98 2-170 141-240 (300)
306 TIGR02731 phytoene_desat phyto 98.1 3.1E-06 6.8E-11 85.6 5.1 40 4-43 1-40 (453)
307 TIGR02730 carot_isom carotene 98.1 4.1E-06 8.8E-11 85.7 5.6 42 3-44 1-42 (493)
308 COG0562 Glf UDP-galactopyranos 98.1 4.4E-06 9.6E-11 76.8 5.0 43 2-44 1-43 (374)
309 TIGR02061 aprA adenosine phosp 98.1 1.8E-05 3.9E-10 82.2 10.1 33 4-36 1-37 (614)
310 PLN02676 polyamine oxidase 98.1 4.2E-06 9.1E-11 85.0 5.4 43 2-44 26-69 (487)
311 PLN02529 lysine-specific histo 98.1 4.6E-06 1E-10 87.6 5.5 43 2-44 160-202 (738)
312 PF13434 K_oxygenase: L-lysine 98.0 1E-05 2.2E-10 78.2 6.7 42 122-163 296-338 (341)
313 COG1053 SdhA Succinate dehydro 98.0 1.2E-05 2.7E-10 82.2 7.5 37 2-38 6-42 (562)
314 PRK13800 putative oxidoreducta 98.0 3E-05 6.4E-10 84.8 10.8 35 2-36 13-47 (897)
315 COG2509 Uncharacterized FAD-de 98.0 7.9E-05 1.7E-09 72.0 12.2 59 103-167 173-231 (486)
316 TIGR03169 Nterm_to_SelD pyridi 98.0 0.00012 2.5E-09 71.9 13.7 93 3-169 146-244 (364)
317 PRK05335 tRNA (uracil-5-)-meth 98.0 8.5E-06 1.8E-10 79.7 5.4 37 1-37 1-37 (436)
318 PRK13977 myosin-cross-reactive 98.0 8.9E-06 1.9E-10 82.3 5.5 41 2-42 22-66 (576)
319 PRK15317 alkyl hydroperoxide r 98.0 6.2E-05 1.3E-09 77.4 11.6 99 2-171 351-452 (517)
320 TIGR02732 zeta_caro_desat caro 97.9 1E-05 2.2E-10 82.1 5.5 40 4-43 1-40 (474)
321 COG1231 Monoamine oxidase [Ami 97.9 1.1E-05 2.4E-10 78.1 5.2 42 2-43 7-48 (450)
322 PLN02487 zeta-carotene desatur 97.9 1.2E-05 2.6E-10 82.7 5.7 41 2-42 75-115 (569)
323 TIGR01316 gltA glutamate synth 97.9 0.00015 3.3E-09 73.1 13.4 33 3-35 273-305 (449)
324 PLN02328 lysine-specific histo 97.9 1.1E-05 2.5E-10 85.2 5.3 43 2-44 238-280 (808)
325 PRK12770 putative glutamate sy 97.8 0.00017 3.7E-09 70.4 11.9 33 3-35 173-206 (352)
326 PRK11749 dihydropyrimidine deh 97.8 0.0002 4.3E-09 72.5 12.8 34 2-35 273-307 (457)
327 KOG1336 Monodehydroascorbate/f 97.8 0.00016 3.4E-09 70.4 11.0 105 3-174 214-319 (478)
328 KOG1276 Protoporphyrinogen oxi 97.8 2.4E-05 5.3E-10 74.7 5.3 42 2-43 11-54 (491)
329 PLN02612 phytoene desaturase 97.8 2.3E-05 4.9E-10 81.3 5.3 41 2-42 93-133 (567)
330 PRK12831 putative oxidoreducta 97.8 0.00031 6.7E-09 71.1 12.9 33 3-35 282-314 (464)
331 TIGR03862 flavo_PP4765 unchara 97.8 5.3E-05 1.2E-09 73.6 6.8 66 96-169 76-144 (376)
332 COG0445 GidA Flavin-dependent 97.8 8.3E-05 1.8E-09 73.5 8.1 149 2-165 4-157 (621)
333 PTZ00363 rab-GDP dissociation 97.8 2.6E-05 5.6E-10 77.8 4.7 42 2-43 4-45 (443)
334 PLN02976 amine oxidase 97.7 3.5E-05 7.6E-10 84.6 5.6 43 2-44 693-735 (1713)
335 PLN03000 amine oxidase 97.7 3.6E-05 7.8E-10 81.6 5.3 43 2-44 184-226 (881)
336 PRK12834 putative FAD-binding 97.7 3.8E-05 8.3E-10 79.5 5.2 41 2-42 4-46 (549)
337 KOG2852 Possible oxidoreductas 97.7 0.00073 1.6E-08 61.5 12.1 182 2-193 10-231 (380)
338 TIGR02462 pyranose_ox pyranose 97.7 4.4E-05 9.6E-10 77.7 4.9 39 3-41 1-39 (544)
339 COG2081 Predicted flavoprotein 97.7 8.3E-05 1.8E-09 71.0 6.2 34 198-231 4-37 (408)
340 KOG2495 NADH-dehydrogenase (ub 97.6 0.00015 3.3E-09 69.4 7.5 101 4-171 220-334 (491)
341 COG0029 NadB Aspartate oxidase 97.6 0.00037 7.9E-09 68.4 10.2 63 100-164 130-194 (518)
342 PRK01438 murD UDP-N-acetylmura 97.6 0.00017 3.7E-09 73.6 8.4 34 2-35 16-49 (480)
343 TIGR03143 AhpF_homolog putativ 97.6 0.00039 8.4E-09 72.1 11.1 34 2-35 143-176 (555)
344 PF07992 Pyr_redox_2: Pyridine 97.6 3E-05 6.5E-10 69.0 1.5 86 199-284 1-126 (201)
345 PRK12778 putative bifunctional 97.5 0.00093 2E-08 71.9 13.0 33 3-35 571-604 (752)
346 PF01134 GIDA: Glucose inhibit 97.5 0.00018 3.8E-09 69.9 6.2 30 199-228 1-30 (392)
347 PF13738 Pyr_redox_3: Pyridine 97.5 0.00019 4.2E-09 63.9 6.0 85 201-285 1-145 (203)
348 PRK12810 gltD glutamate syntha 97.5 0.0014 3E-08 66.6 12.7 34 2-35 281-315 (471)
349 COG2072 TrkA Predicted flavopr 97.5 0.00057 1.2E-08 68.6 9.4 35 197-231 8-43 (443)
350 PF00732 GMC_oxred_N: GMC oxid 97.5 0.00011 2.3E-09 70.0 3.9 35 3-37 1-36 (296)
351 TIGR01318 gltD_gamma_fam gluta 97.4 0.0038 8.2E-08 63.3 15.3 34 2-35 282-316 (467)
352 PRK12779 putative bifunctional 97.4 0.0019 4E-08 70.8 13.5 33 3-35 448-480 (944)
353 TIGR01372 soxA sarcosine oxida 97.4 0.0014 3.1E-08 72.4 12.6 97 2-171 317-414 (985)
354 COG3075 GlpB Anaerobic glycero 97.4 0.00019 4.1E-09 66.4 4.7 35 1-35 1-35 (421)
355 PRK12814 putative NADPH-depend 97.3 0.0064 1.4E-07 64.3 16.1 34 2-35 323-357 (652)
356 KOG2853 Possible oxidoreductas 97.3 0.0026 5.5E-08 59.4 10.8 43 2-44 86-141 (509)
357 PRK06847 hypothetical protein; 97.3 0.00061 1.3E-08 67.1 7.3 34 197-230 4-37 (375)
358 KOG0042 Glycerol-3-phosphate d 97.3 0.00027 5.7E-09 69.6 4.4 41 2-42 67-107 (680)
359 KOG3851 Sulfide:quinone oxidor 97.3 0.00038 8.2E-09 64.2 5.1 88 198-285 40-150 (446)
360 PRK06753 hypothetical protein; 97.3 0.00079 1.7E-08 66.2 7.7 33 199-231 2-34 (373)
361 PRK12769 putative oxidoreducta 97.3 0.0041 9E-08 65.9 13.5 33 3-35 469-502 (654)
362 PLN02463 lycopene beta cyclase 97.2 0.00077 1.7E-08 67.6 7.2 33 198-230 29-61 (447)
363 PRK07236 hypothetical protein; 97.2 0.0011 2.4E-08 65.6 8.3 34 197-230 6-39 (386)
364 TIGR00292 thiazole biosynthesi 97.2 0.00068 1.5E-08 62.7 6.3 37 195-231 19-55 (254)
365 KOG2844 Dimethylglycine dehydr 97.2 0.00086 1.9E-08 67.7 7.2 61 99-166 183-243 (856)
366 KOG1399 Flavin-containing mono 97.2 0.0022 4.7E-08 63.9 9.9 35 197-231 6-40 (448)
367 PRK09853 putative selenate red 97.1 0.00049 1.1E-08 74.5 5.2 37 195-231 537-573 (1019)
368 KOG2960 Protein involved in th 97.1 0.00064 1.4E-08 59.0 4.8 41 3-43 77-120 (328)
369 PF03486 HI0933_like: HI0933-l 97.1 0.00031 6.7E-09 69.4 3.3 33 199-231 2-34 (409)
370 PRK05868 hypothetical protein; 97.1 0.0018 3.9E-08 63.7 8.2 34 198-231 2-35 (372)
371 PRK02106 choline dehydrogenase 97.1 0.00058 1.3E-08 71.0 4.8 68 107-177 205-273 (560)
372 PLN02852 ferredoxin-NADP+ redu 97.1 0.00052 1.1E-08 69.3 4.2 36 196-231 25-62 (491)
373 KOG1346 Programmed cell death 97.1 0.0018 3.8E-08 62.0 7.3 58 105-171 395-452 (659)
374 COG3573 Predicted oxidoreducta 97.0 0.00078 1.7E-08 62.6 4.7 39 2-40 5-45 (552)
375 KOG2665 Predicted FAD-dependen 97.0 0.0027 5.9E-08 58.6 8.2 37 2-38 48-86 (453)
376 KOG3923 D-aspartate oxidase [A 97.0 0.00088 1.9E-08 61.3 5.0 44 1-44 2-59 (342)
377 PRK07588 hypothetical protein; 97.0 0.0017 3.7E-08 64.3 7.5 34 198-231 1-34 (391)
378 COG3486 IucD Lysine/ornithine 97.0 0.011 2.5E-07 56.7 12.4 82 122-205 295-384 (436)
379 PF00743 FMO-like: Flavin-bind 97.0 0.0012 2.6E-08 67.7 6.4 34 198-231 2-35 (531)
380 PLN02172 flavin-containing mon 97.0 0.0023 4.9E-08 64.6 8.2 34 2-35 204-237 (461)
381 TIGR01789 lycopene_cycl lycope 97.0 0.0023 4.9E-08 62.9 7.7 81 199-280 1-138 (370)
382 TIGR01317 GOGAT_sm_gam glutama 97.0 0.028 6.1E-07 57.3 15.9 34 2-35 283-317 (485)
383 COG0492 TrxB Thioredoxin reduc 97.0 0.0097 2.1E-07 56.5 11.6 97 2-170 143-240 (305)
384 COG1635 THI4 Ribulose 1,5-bisp 96.9 0.0025 5.5E-08 55.9 6.7 43 189-231 22-64 (262)
385 PRK08163 salicylate hydroxylas 96.9 0.003 6.6E-08 62.6 8.1 35 197-231 4-38 (396)
386 PRK04176 ribulose-1,5-biphosph 96.9 0.0034 7.3E-08 58.2 7.7 37 194-230 22-58 (257)
387 PRK13984 putative oxidoreducta 96.9 0.026 5.6E-07 59.4 15.2 31 2-32 418-454 (604)
388 KOG2311 NAD/FAD-utilizing prot 96.9 0.0049 1.1E-07 60.1 8.7 33 2-34 28-60 (679)
389 PLN02661 Putative thiazole syn 96.9 0.0037 8.1E-08 59.9 7.9 46 185-230 80-126 (357)
390 KOG0405 Pyridine nucleotide-di 96.9 0.0043 9.3E-08 58.1 7.9 103 2-172 189-291 (478)
391 PF05834 Lycopene_cycl: Lycope 96.9 0.003 6.4E-08 62.2 7.4 82 200-281 2-143 (374)
392 TIGR03315 Se_ygfK putative sel 96.8 0.016 3.4E-07 63.4 13.3 34 2-35 666-701 (1012)
393 PRK12809 putative oxidoreducta 96.8 0.017 3.7E-07 61.0 13.3 34 2-35 451-485 (639)
394 PRK12775 putative trifunctiona 96.8 0.015 3.2E-07 64.5 13.1 33 2-34 571-604 (1006)
395 TIGR03219 salicylate_mono sali 96.8 0.0033 7.2E-08 62.8 7.5 33 199-231 2-35 (414)
396 PRK01438 murD UDP-N-acetylmura 96.8 0.00095 2.1E-08 68.1 3.6 79 195-285 14-95 (480)
397 TIGR03378 glycerol3P_GlpB glyc 96.8 0.0016 3.5E-08 64.1 4.8 33 3-35 1-33 (419)
398 TIGR01810 betA choline dehydro 96.8 0.0011 2.4E-08 68.5 3.8 69 105-176 196-265 (532)
399 KOG2755 Oxidoreductase [Genera 96.7 0.0015 3.3E-08 58.7 3.8 83 200-282 2-106 (334)
400 PRK08773 2-octaprenyl-3-methyl 96.7 0.0039 8.4E-08 61.8 7.2 33 198-230 7-39 (392)
401 PRK12771 putative glutamate sy 96.7 0.034 7.3E-07 58.0 14.4 33 2-34 267-300 (564)
402 KOG4254 Phytoene desaturase [C 96.7 0.0015 3.2E-08 63.2 3.7 43 2-44 14-56 (561)
403 PRK06834 hypothetical protein; 96.6 0.0053 1.2E-07 62.6 7.6 33 198-230 4-36 (488)
404 TIGR01790 carotene-cycl lycope 96.6 0.0048 1E-07 61.0 7.1 32 199-230 1-32 (388)
405 TIGR01470 cysG_Nterm siroheme 96.6 0.0017 3.7E-08 57.9 3.3 79 195-284 7-86 (205)
406 PRK05192 tRNA uridine 5-carbox 96.6 0.0044 9.5E-08 63.8 6.6 32 198-229 5-36 (618)
407 PRK14106 murD UDP-N-acetylmura 96.6 0.0035 7.7E-08 63.3 6.0 33 2-34 5-37 (450)
408 PRK09126 hypothetical protein; 96.6 0.0049 1.1E-07 61.0 6.9 33 198-230 4-36 (392)
409 KOG3855 Monooxygenase involved 96.6 0.012 2.5E-07 56.7 8.8 33 2-34 36-72 (481)
410 COG0654 UbiH 2-polyprenyl-6-me 96.5 0.0063 1.4E-07 60.2 7.2 32 198-229 3-34 (387)
411 COG2303 BetA Choline dehydroge 96.5 0.0022 4.8E-08 66.1 4.0 34 2-35 7-40 (542)
412 PTZ00188 adrenodoxin reductase 96.5 0.0025 5.4E-08 63.7 3.8 36 196-231 38-74 (506)
413 PRK07333 2-octaprenyl-6-methox 96.5 0.0074 1.6E-07 60.0 7.2 32 199-230 3-36 (403)
414 TIGR01988 Ubi-OHases Ubiquinon 96.4 0.0077 1.7E-07 59.4 7.2 32 199-230 1-32 (385)
415 PRK06567 putative bifunctional 96.4 0.0042 9E-08 66.9 5.1 36 194-229 380-415 (1028)
416 PLN02697 lycopene epsilon cycl 96.4 0.0064 1.4E-07 62.2 6.2 32 198-229 109-140 (529)
417 PRK07494 2-octaprenyl-6-methox 96.4 0.0099 2.1E-07 58.8 7.4 33 198-230 8-40 (388)
418 PRK07045 putative monooxygenas 96.4 0.011 2.4E-07 58.4 7.8 34 198-231 6-39 (388)
419 PRK06184 hypothetical protein; 96.3 0.0098 2.1E-07 61.1 7.4 33 198-230 4-36 (502)
420 PRK05714 2-octaprenyl-3-methyl 96.3 0.0091 2E-07 59.4 7.0 32 199-230 4-35 (405)
421 PRK05329 anaerobic glycerol-3- 96.3 0.034 7.4E-07 55.3 10.7 58 103-164 259-316 (422)
422 TIGR01984 UbiH 2-polyprenyl-6- 96.3 0.011 2.4E-07 58.3 7.2 32 199-230 1-33 (382)
423 PRK08850 2-octaprenyl-6-methox 96.3 0.011 2.5E-07 58.8 7.3 32 198-229 5-36 (405)
424 PRK08849 2-octaprenyl-3-methyl 96.3 0.011 2.5E-07 58.3 7.2 32 199-230 5-36 (384)
425 PLN02785 Protein HOTHEAD 96.2 0.0047 1E-07 64.2 4.5 34 2-36 55-88 (587)
426 TIGR02032 GG-red-SF geranylger 96.2 0.0094 2E-07 56.2 6.3 32 199-230 2-33 (295)
427 KOG4716 Thioredoxin reductase 96.2 0.012 2.5E-07 55.1 6.4 103 4-171 200-303 (503)
428 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0056 1.2E-07 52.2 4.2 32 4-35 1-32 (157)
429 PF13454 NAD_binding_9: FAD-NA 96.2 0.015 3.2E-07 49.6 6.7 30 201-230 1-35 (156)
430 PRK07608 ubiquinone biosynthes 96.2 0.015 3.3E-07 57.5 7.7 33 199-231 7-39 (388)
431 PRK07364 2-octaprenyl-6-methox 96.2 0.015 3.2E-07 58.1 7.5 33 198-230 19-51 (415)
432 COG0445 GidA Flavin-dependent 96.0 0.0097 2.1E-07 59.3 5.3 33 198-230 5-37 (621)
433 PRK07190 hypothetical protein; 96.0 0.015 3.3E-07 59.3 6.8 34 198-231 6-39 (487)
434 PRK09897 hypothetical protein; 96.0 0.017 3.6E-07 59.3 7.0 33 198-230 2-36 (534)
435 PRK08013 oxidoreductase; Provi 96.0 0.021 4.6E-07 56.8 7.6 33 198-230 4-36 (400)
436 PRK08020 ubiF 2-octaprenyl-3-m 96.0 0.023 4.9E-07 56.3 7.8 33 198-230 6-38 (391)
437 PRK06718 precorrin-2 dehydroge 96.0 0.0073 1.6E-07 53.7 3.9 36 195-230 8-43 (202)
438 PRK05732 2-octaprenyl-6-methox 95.9 0.022 4.7E-07 56.4 7.4 32 198-229 4-38 (395)
439 PRK08244 hypothetical protein; 95.9 0.017 3.7E-07 59.1 6.7 34 198-231 3-36 (493)
440 COG0569 TrkA K+ transport syst 95.9 0.011 2.4E-07 53.5 4.6 33 3-35 1-33 (225)
441 PF03721 UDPG_MGDP_dh_N: UDP-g 95.8 0.0096 2.1E-07 52.2 4.0 34 3-36 1-34 (185)
442 COG1206 Gid NAD(FAD)-utilizing 95.8 0.0097 2.1E-07 55.4 3.8 35 2-36 3-37 (439)
443 COG1251 NirB NAD(P)H-nitrite r 95.8 0.022 4.7E-07 58.9 6.6 101 3-171 146-246 (793)
444 PF13241 NAD_binding_7: Putati 95.8 0.0086 1.9E-07 47.0 3.1 33 2-34 7-39 (103)
445 PF13241 NAD_binding_7: Putati 95.8 0.012 2.7E-07 46.1 3.9 36 195-230 5-40 (103)
446 PRK10157 putative oxidoreducta 95.8 0.018 3.9E-07 57.8 6.1 33 198-230 6-38 (428)
447 PRK06475 salicylate hydroxylas 95.7 0.029 6.3E-07 55.8 7.2 34 198-231 3-36 (400)
448 PRK06617 2-octaprenyl-6-methox 95.7 0.026 5.6E-07 55.6 6.8 31 199-229 3-33 (374)
449 PF02737 3HCDH_N: 3-hydroxyacy 95.7 0.016 3.5E-07 50.6 4.6 32 4-35 1-32 (180)
450 TIGR01470 cysG_Nterm siroheme 95.6 0.02 4.3E-07 51.1 5.2 34 2-35 9-42 (205)
451 PRK02705 murD UDP-N-acetylmura 95.6 0.014 3.1E-07 59.1 4.6 33 4-36 2-34 (459)
452 KOG0399 Glutamate synthase [Am 95.6 0.015 3.2E-07 62.3 4.5 38 194-231 1782-1819(2142)
453 PF01593 Amino_oxidase: Flavin 95.5 0.011 2.4E-07 58.9 3.4 32 12-43 1-32 (450)
454 KOG2614 Kynurenine 3-monooxyge 95.5 0.04 8.6E-07 53.2 6.9 33 198-230 3-35 (420)
455 COG0493 GltD NADPH-dependent g 95.5 0.014 3.1E-07 58.4 4.1 38 194-231 120-157 (457)
456 PRK06719 precorrin-2 dehydroge 95.4 0.025 5.4E-07 48.1 4.9 32 2-33 13-44 (157)
457 KOG2311 NAD/FAD-utilizing prot 95.4 0.037 8E-07 54.2 6.5 33 198-230 29-61 (679)
458 TIGR03197 MnmC_Cterm tRNA U-34 95.4 0.04 8.8E-07 54.3 6.9 63 98-168 130-192 (381)
459 TIGR00136 gidA glucose-inhibit 95.4 0.036 7.8E-07 57.2 6.6 31 199-229 2-32 (617)
460 COG3634 AhpF Alkyl hydroperoxi 95.3 0.42 9.2E-06 45.2 12.7 105 2-176 354-460 (520)
461 COG1148 HdrA Heterodisulfide r 95.3 0.027 5.8E-07 55.3 5.2 35 197-231 124-158 (622)
462 PF13450 NAD_binding_8: NAD(P) 95.2 0.02 4.3E-07 41.1 3.1 30 202-231 1-30 (68)
463 PRK06718 precorrin-2 dehydroge 95.2 0.034 7.3E-07 49.5 5.1 33 2-34 10-42 (202)
464 PLN02927 antheraxanthin epoxid 95.2 0.058 1.3E-06 56.6 7.5 35 196-230 80-114 (668)
465 PRK06183 mhpA 3-(3-hydroxyphen 95.1 0.046 1E-06 56.6 6.8 33 198-230 11-43 (538)
466 PRK08229 2-dehydropantoate 2-r 95.1 0.029 6.3E-07 54.4 5.0 34 1-34 1-34 (341)
467 PF06100 Strep_67kDa_ant: Stre 95.1 0.026 5.6E-07 56.1 4.5 43 2-44 2-48 (500)
468 KOG0404 Thioredoxin reductase 95.1 0.045 9.7E-07 48.3 5.4 88 198-285 9-129 (322)
469 PF01488 Shikimate_DH: Shikima 95.1 0.047 1E-06 45.2 5.5 34 2-35 12-46 (135)
470 COG1004 Ugd Predicted UDP-gluc 95.1 0.025 5.5E-07 54.4 4.2 33 3-35 1-33 (414)
471 PRK07538 hypothetical protein; 95.1 0.076 1.7E-06 53.0 7.9 32 199-230 2-33 (413)
472 PRK08243 4-hydroxybenzoate 3-m 95.0 0.081 1.7E-06 52.4 7.9 33 198-230 3-35 (392)
473 PF01262 AlaDh_PNT_C: Alanine 95.0 0.038 8.3E-07 47.6 4.9 34 2-35 20-53 (168)
474 PRK06129 3-hydroxyacyl-CoA deh 95.0 0.031 6.7E-07 53.4 4.6 33 3-35 3-35 (308)
475 PRK14106 murD UDP-N-acetylmura 95.0 0.02 4.3E-07 57.9 3.5 80 195-285 3-85 (450)
476 PRK11445 putative oxidoreducta 95.0 0.08 1.7E-06 51.6 7.5 31 199-230 3-33 (351)
477 TIGR02352 thiamin_ThiO glycine 94.9 0.14 3E-06 49.3 9.1 64 98-169 132-196 (337)
478 PRK05708 2-dehydropantoate 2-r 94.9 0.042 9.1E-07 52.4 5.2 34 1-34 1-34 (305)
479 PF04820 Trp_halogenase: Trypt 94.8 0.057 1.2E-06 54.5 6.2 32 199-230 1-35 (454)
480 PRK05335 tRNA (uracil-5-)-meth 94.8 0.026 5.7E-07 55.6 3.6 33 198-230 3-35 (436)
481 PRK06996 hypothetical protein; 94.8 0.07 1.5E-06 53.0 6.7 33 198-230 12-48 (398)
482 KOG1298 Squalene monooxygenase 94.7 0.039 8.5E-07 52.7 4.4 69 199-267 47-126 (509)
483 PRK09260 3-hydroxybutyryl-CoA 94.7 0.042 9.1E-07 52.0 4.6 33 3-35 2-34 (288)
484 PRK07819 3-hydroxybutyryl-CoA 94.7 0.039 8.5E-07 52.0 4.4 33 3-35 6-38 (286)
485 KOG1238 Glucose dehydrogenase/ 94.7 0.032 6.9E-07 57.0 3.9 36 2-37 57-93 (623)
486 PRK07530 3-hydroxybutyryl-CoA 94.6 0.051 1.1E-06 51.5 5.1 34 2-35 4-37 (292)
487 PRK04148 hypothetical protein; 94.6 0.037 8E-07 45.3 3.5 33 3-36 18-50 (134)
488 PRK07066 3-hydroxybutyryl-CoA 94.6 0.045 9.8E-07 52.3 4.6 33 3-35 8-40 (321)
489 COG0579 Predicted dehydrogenas 94.6 0.21 4.5E-06 49.5 9.2 33 198-230 4-38 (429)
490 TIGR00275 flavoprotein, HI0933 94.5 0.055 1.2E-06 53.8 5.2 30 201-230 1-30 (400)
491 COG1648 CysG Siroheme synthase 94.5 0.03 6.5E-07 49.9 3.0 37 194-230 9-45 (210)
492 PRK08293 3-hydroxybutyryl-CoA 94.5 0.049 1.1E-06 51.5 4.6 34 2-35 3-36 (287)
493 PF00996 GDI: GDP dissociation 94.5 0.04 8.7E-07 54.7 4.2 42 2-43 4-45 (438)
494 PRK06719 precorrin-2 dehydroge 94.5 0.041 9E-07 46.8 3.7 34 194-227 10-43 (157)
495 COG4529 Uncharacterized protei 94.5 0.12 2.6E-06 51.1 7.3 34 198-231 2-38 (474)
496 COG3380 Predicted NAD/FAD-depe 94.4 0.063 1.4E-06 48.9 4.6 32 199-230 3-34 (331)
497 PF02558 ApbA: Ketopantoate re 94.3 0.065 1.4E-06 45.1 4.6 30 5-34 1-30 (151)
498 PF03446 NAD_binding_2: NAD bi 94.3 0.069 1.5E-06 45.8 4.7 34 2-35 1-34 (163)
499 PRK06035 3-hydroxyacyl-CoA deh 94.3 0.055 1.2E-06 51.3 4.4 33 3-35 4-36 (291)
500 TIGR00137 gid_trmFO tRNA:m(5)U 94.2 0.037 7.9E-07 54.9 3.2 33 199-231 2-34 (433)
No 1
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.7e-85 Score=653.36 Aligned_cols=437 Identities=58% Similarity=1.062 Sum_probs=395.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|||||||+|||+||++|++.|++|+|||+++.+||+|++.+....++.++.|.....++++|++|++|+|+..|+|+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 58999999999999999999999999999999999999999988777777788887777889999999999999999999
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
|||+++...+...+.+.||++.++.+||++|++++++..+|+|+++|++|++.+ +.|+|++.++.+...+..||+||||
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEEEEEEcCCCceEEEEcCEEEEe
Confidence 999976422222346789999999999999999999999999999999999876 7899998765433446789999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCC-C
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-G 240 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~-~ 240 (446)
||+++.|++|.+||++.|+|.++|++.|+.++.|+||+|+|||+|.||+|+|.+|+..+++|++++|+.......++. .
T Consensus 169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~ 248 (461)
T PLN02172 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVP 248 (461)
T ss_pred ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999976532233332 2
Q ss_pred CCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCC
Q 013303 241 YDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIP 320 (446)
Q Consensus 241 ~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~ 320 (446)
..++..++.|..+.+++.|+|+||+++++|.||+||||++++|||+..+.+.++++.+.|||+|+|++...|+|+|||++
T Consensus 249 ~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~ 328 (461)
T PLN02172 249 QNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLP 328 (461)
T ss_pred CCceEECCcccceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEecc
Confidence 34677788888887777799999999999999999999999999998888889999998999999999856999999999
Q ss_pred CccCchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceeecCCcchhHHHHHHHHHCCCCCchHH
Q 013303 321 QKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEW 400 (446)
Q Consensus 321 ~~~~~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~g~~~~~~~ 400 (446)
..+.+++++|+||+|+|++|+|+..|||.++|+++++++++.+++.+.+.|++|.+++ .+++|+|+||+++|+++.++|
T Consensus 329 ~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~~~~~~~~~~g~~~r~~h~~~~-~~~~y~~~la~~~g~~~~~~~ 407 (461)
T PLN02172 329 AMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGK-IQSEYLNWIAEECGCPLVEHW 407 (461)
T ss_pred ccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHhcCCCCceeEEcCc-cHHHHHHHHHHHhCCCCCHHH
Confidence 8899999999999999999999999999999999999999988888888899999876 699999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCcccCCcCCCHHHHHHHHHHHhhhh
Q 013303 401 RKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIKYT 441 (446)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~yr~~~~~~~~~~~~~~~~~~~~ 441 (446)
+++||..+.+.++ .++++||+.|.+++..+++.++|.++.
T Consensus 408 ~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~ 447 (461)
T PLN02172 408 RYQEVDRGYQRLV-SQPETYRDEWDDDDLMEEAYEDFARKK 447 (461)
T ss_pred HHHHHHHHHHHHH-hCHHhhccccccccceeecccccceEE
Confidence 9999999999998 999999999999999999999988654
No 2
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=4.1e-73 Score=571.07 Aligned_cols=400 Identities=39% Similarity=0.708 Sum_probs=273.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+|+|||||||++||++|++|++.|++++|||+++.+||+|++.+.... -.+++|+++.+|+|+.+|+|+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~-----------g~~~~y~sl~~n~sk~~~~fs 69 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPED-----------GRSSVYDSLHTNTSKEMMAFS 69 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCC-----------SEGGGSTT-B-SS-GGGSCCT
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCC-----------CccccccceEEeeCchHhcCC
Confidence 489999999999999999999999999999999999999998643221 146799999999999999999
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC----CceEEEEEeCCCceEEEEEcE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES----NKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~----~~~~v~~~~~~~~~~~~~~d~ 157 (446)
|||+++. .+.||++.++.+||++|+++|+|.++|+||++|++|++.++ ++|+|++++ ++..++..||+
T Consensus 70 dfp~p~~-------~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-~g~~~~~~fD~ 141 (531)
T PF00743_consen 70 DFPFPED-------YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-DGKEETEEFDA 141 (531)
T ss_dssp TS-HCCC-------CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-TTEEEEEEECE
T ss_pred CcCCCCC-------CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-CCeEEEEEeCe
Confidence 9999876 78899999999999999999999999999999999998753 579998754 44556778999
Q ss_pred EEEccCCCCCCccCC--CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303 158 VVVCNGHFSVPRLAQ--VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (446)
Q Consensus 158 VVvAtG~~s~p~~p~--i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---- 231 (446)
||||||+++.|++|. +||++.|+|.++||++|++++.|+||+|+|||+|.||+|||.+|+..+++|++++|++.
T Consensus 142 VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~p 221 (531)
T PF00743_consen 142 VVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLP 221 (531)
T ss_dssp EEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------
T ss_pred EEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccc
Confidence 999999999999995 99999999999999999999999999999999999999999999999999999999874
Q ss_pred ---------cc--------cc---------ccC------------------------------------CCCCCeeeccc
Q 013303 232 ---------DE--------TH---------EKQ------------------------------------PGYDNMWLHSM 249 (446)
Q Consensus 232 ---------~~--------~~---------~~~------------------------------------~~~~~v~~~~~ 249 (446)
+. .+ ..+ ...+.+..++.
T Consensus 222 r~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~ 301 (531)
T PF00743_consen 222 RYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPD 301 (531)
T ss_dssp -----------------------------------------------------------------------------EE-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 00 000 01124445678
Q ss_pred eeEEccCCcEEecCCcEE-eecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCC-CCCeEEecCCC-ccCch
Q 013303 250 VERANEDGTVVFRNGRVV-SADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL-APGLSFVGIPQ-KVIPF 326 (446)
Q Consensus 250 v~~i~~~~~v~~~dG~~~-~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~-~p~l~~iG~~~-~~~~~ 326 (446)
|+++.++ +|+|+||+++ ++|+||+||||++++|||++.. +.++++.. .||+++|++.. +|+|+|||++. .+..+
T Consensus 302 I~~~~~~-~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~-~~~~~~~~-~LYk~vfp~~~~~ptLafIG~~~~~g~~f 378 (531)
T PF00743_consen 302 IKRFTEN-SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESL-IKVDDNRV-RLYKHVFPPNLDHPTLAFIGLVQPFGSIF 378 (531)
T ss_dssp EEEE-SS-EEEETTSEEEEE-SEEEE---EE---TTB-TTT-T-S-SSSS-SEETTTEETETTSTTEEESS-SBSSS-HH
T ss_pred ccccccc-ccccccccccccccccccccccccccccccccc-cccccccc-ccccccccccccccccccccccccccccc
Confidence 8889764 4999999986 5999999999999999999764 45555544 79999999863 59999999876 35678
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceeecCCcchhHHHHHHHHHCCCCC-chH-HHH--
Q 013303 327 PFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQG-YEE-WRK-- 402 (446)
Q Consensus 327 ~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~g~~~-~~~-~~~-- 402 (446)
+++|+||+|+|++|+|+.+||+.++|.+++.++.+++..+... ...|.+.. +++.|+|+||+++|+.| +.. |.+
T Consensus 379 p~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~~~-~~~~~~~~-d~~~y~deLA~~iG~~P~~~~l~~~dp 456 (531)
T PF00743_consen 379 PIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRFGF-SPRHTIQV-DYIDYMDELAREIGCKPNFWKLFLTDP 456 (531)
T ss_dssp HHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT--SH-HHHHHHHH-HHHHHHHTTS-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cccccccc-ccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999987776544322 12344433 58899999999999854 221 122
Q ss_pred HHHHHH-HhhhcccCCcccC----CcCCCHH
Q 013303 403 QMAYSA-FKNAFITRPGTYR----DEWDDEH 428 (446)
Q Consensus 403 ~~~~~~-~~~~~~~~~~~yr----~~~~~~~ 428 (446)
.++..+ +.+ ..|..|| ..|....
T Consensus 457 ~l~~~~~~gp---~~p~~YRL~Gpg~w~gar 484 (531)
T PF00743_consen 457 KLARKLYFGP---CTPYQYRLFGPGKWPGAR 484 (531)
T ss_dssp -------------------------------
T ss_pred cccccccccc---cccccccccccccccccc
Confidence 244333 444 7899999 3355443
No 3
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-67 Score=513.49 Aligned_cols=421 Identities=47% Similarity=0.859 Sum_probs=359.6
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
|+++|||||||||||++|++|.++|++++||||++.+||.|.+.+... ..++++|++|++|+|++.|+|
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~-----------~~~ss~Y~~l~tn~pKe~~~~ 73 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE-----------VVHSSVYKSLRTNLPKEMMGY 73 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc-----------ccccchhhhhhccCChhhhcC
Confidence 368999999999999999999999999999999999999999975443 246889999999999999999
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
+||||++. ....||++.++.+||++||++|++.++|+|+++|..|+...++.|.|.+.+..+...+..||.|||
T Consensus 74 ~dfpf~~~------~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvV 147 (448)
T KOG1399|consen 74 SDFPFPER------DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVV 147 (448)
T ss_pred CCCCCccc------CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEE
Confidence 99999876 456779999999999999999999999999999999988764699999988654456889999999
Q ss_pred ccCCCCCCccCCCCC--CCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccC
Q 013303 161 CNGHFSVPRLAQVPG--IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238 (446)
Q Consensus 161 AtG~~s~p~~p~i~G--~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~ 238 (446)
|||||..|++|.++| ++.|+|+++||++|+.++.|++|+|+|||+|+||+|+|.+++..+++|+++.++........-
T Consensus 148 ctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~ 227 (448)
T KOG1399|consen 148 CTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPE 227 (448)
T ss_pred cccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccc
Confidence 999997799999999 679999999999999999999999999999999999999999999999999762000000000
Q ss_pred CCCCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEec
Q 013303 239 PGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVG 318 (446)
Q Consensus 239 ~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG 318 (446)
.-..+++.++.|+.+.+++.+.+.++....+|.||+||||.+.+|||+..+.+.+.++.+.|+|+++|++...|++.++|
T Consensus 228 ~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~ 307 (448)
T KOG1399|consen 228 ILGENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAG 307 (448)
T ss_pred eeecceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccchheeccchhhCccccccc
Confidence 11236666777999988886777777778899999999999999999988767778888889999999998889999999
Q ss_pred CCCccCchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCC-CcceeecCCcchhHHHHHHHHHCCCCCc
Q 013303 319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKP-KRYTHIMDYPQLIEYTDWLAAQCNCQGY 397 (446)
Q Consensus 319 ~~~~~~~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~l~~~~g~~~~ 397 (446)
++.....++++|.|++|++++++|+..||+.++|+.+.......+...+.+ .|++|.+....+++|..+++.+.|++..
T Consensus 308 l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~~~~~~g~~~~ 387 (448)
T KOG1399|consen 308 LPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLATGRHTHVPDYDELAEYINWFADLCGFPKT 387 (448)
T ss_pred cCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhcccccccccccchHHHHHHhhhhhhhcCCCCc
Confidence 987778999999999999999999999999999999999988888888877 6666765312588999999999999999
Q ss_pred hHHHHHHHHHHHhhhcccCCcccCCcCCCH-HHHHHHHHHHhh
Q 013303 398 EEWRKQMAYSAFKNAFITRPGTYRDEWDDE-HLVAEANKDFIK 439 (446)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~yr~~~~~~-~~~~~~~~~~~~ 439 (446)
++|+............ ....+||+.|.+. ..+..+.+++.+
T Consensus 388 ~~~~~~~~~~g~~~~y-~~~~~~~~~w~g~~~~~~~~~~~~~~ 429 (448)
T KOG1399|consen 388 EPWLAKEGWKGPCGLY-AYGLTGPDKWDGAAKLILEADDDIGK 429 (448)
T ss_pred chHHhhhhccCcccee-EeecccCcccccHHHHHHHHHHhhcc
Confidence 9998765433333333 5677888999999 444477777765
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=316.33 Aligned_cols=200 Identities=32% Similarity=0.589 Sum_probs=185.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
.+||+|||||++||++|.+|.+.|.. ++|||+++.+||+|+++ +|++++.++|+..++|
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~--------------------ry~~l~~~~p~~~~~~ 67 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN--------------------RYPGLRLDSPKWLLGF 67 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc--------------------cCCceEECCchheecc
Confidence 57999999999999999999999998 99999999999999985 8999999999999999
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
+.+||.. ...|+...++.+|+.++++++++...|++++.|..+.++++ ..|+|+++++...+ ++||+||
T Consensus 68 ~~~p~~~--------~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~--~~a~~vV 137 (443)
T COG2072 68 PFLPFRW--------DEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGE--LTADFVV 137 (443)
T ss_pred CCCccCC--------cccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeee--EecCEEE
Confidence 9999962 45777777899999999999999999999999999988765 48999998875322 7899999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
+|||+++.|++|.|+|.+.|.|.++||.+|+++++|+||+|+|||+|.||+|+|.+|++.+++|+++.|++.
T Consensus 138 ~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 138 VATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred EeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 5
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=6.3e-34 Score=271.70 Aligned_cols=276 Identities=21% Similarity=0.274 Sum_probs=208.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+|||||+|||++|..|++.|++|+|||+.+ +||.|..... ...++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~------------------------------~~~~~~ 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE------------------------------VENYPG 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc------------------------------ccccCC
Confidence 589999999999999999999999999999875 7887764210 000111
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
+ +...++.++.+++.++++++++. +++ ++|+++++.+ +.|.|++.++. ++.||+||+||
T Consensus 50 ~-------------~~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~-~~~~v~~~~~~----~~~~d~liiAt 108 (300)
T TIGR01292 50 F-------------PEGISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSD-RPFKVKTGDGK----EYTAKAVIIAT 108 (300)
T ss_pred C-------------CCCCChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecC-CeeEEEeCCCC----EEEeCEEEECC
Confidence 1 11234568999999999999987 777 8999999865 67888876543 79999999999
Q ss_pred CCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----ccccccC
Q 013303 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQ 238 (446)
Q Consensus 163 G~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~~~ 238 (446)
| +.|+.|.+||.+.+.+..++...+.....+++++|+|||+|.+|+|+|..|++.+++|+++.+.+. ....+.+
T Consensus 109 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l 186 (300)
T TIGR01292 109 G--ASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRL 186 (300)
T ss_pred C--CCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHH
Confidence 9 788989999987776666666655555567889999999999999999999999999999999764 1112223
Q ss_pred CCC-C-CeeeccceeEEccCCc---EEec---CC--cEEeecEEEEecCccCCCCCCC------CCCeeeeCCCCccccc
Q 013303 239 PGY-D-NMWLHSMVERANEDGT---VVFR---NG--RVVSADVIMHCTGYKYNYPFLE------TNGIVTVDDNRVGPLY 302 (446)
Q Consensus 239 ~~~-~-~v~~~~~v~~i~~~~~---v~~~---dG--~~~~~D~vi~atG~~~~~~~l~------~~g~i~~~~~~~~~l~ 302 (446)
.+. + .+.....+.++..++. +.+. +| .++++|.||+|||++|+.+++. ++|.+.+|+..+
T Consensus 187 ~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~---- 262 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMR---- 262 (300)
T ss_pred HhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCc----
Confidence 333 2 4555678888876543 4443 24 4588999999999999987753 345566655533
Q ss_pred ccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcC
Q 013303 303 KHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 303 ~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g 342 (446)
++.|+||++|++.. ......+..||+.+|.++..
T Consensus 263 ------t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 263 ------TSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred ------cCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence 45899999998864 34456788999999988753
No 6
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.7e-33 Score=275.03 Aligned_cols=293 Identities=24% Similarity=0.324 Sum_probs=204.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~ 80 (446)
.+||+||||||+|..||..+++.|.+|+++|+...+||+|.+. ||+|+|.++++... ..+..... .+++
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~--------GCIPsK~Ll~~a~~~~~~~~~~~--~~Gi 73 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV--------GCIPSKALLHAAEVIEEARHAAK--EYGI 73 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee--------CccccHHHHHHHHHHHHHhhccc--ccce
Confidence 5899999999999999999999999999999988899999986 99999988876533 33222111 1111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
. .. .. -.+..++.+. +..+.+..+++ +..+ +. +.. +..+|.+... .
T Consensus 74 ~-----~~-------~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~--vi~G-~a----~f~-~~~~v~V~~~--~ 130 (454)
T COG1249 74 S-----AE-------VP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVD--VIRG-EA----RFV-DPHTVEVTGE--D 130 (454)
T ss_pred e-----cC-------CC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCE--EEEE-EE----EEC-CCCEEEEcCC--C
Confidence 0 00 00 1122233333 23333333443 2211 11 111 3456666553 2
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.++++++++||||| |+|+.|+++|++.. .++.+.+..... .-+++++|||+|.+|+|+|..+++.|.+||++.+.
T Consensus 131 ~~~~~a~~iiIATG--S~p~~~~~~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~ 205 (454)
T COG1249 131 KETITADNIIIATG--SRPRIPPGPGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERG 205 (454)
T ss_pred ceEEEeCEEEEcCC--CCCcCCCCCCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 35899999999999 99999999998752 244444423333 45799999999999999999999999999999998
Q ss_pred CC-----cccc-----ccCCCC-CCeeeccceeEEccCCc---EEecCCc--EEeecEEEEecCccCCCCCC--------
Q 013303 230 VA-----DETH-----EKQPGY-DNMWLHSMVERANEDGT---VVFRNGR--VVSADVIMHCTGYKYNYPFL-------- 285 (446)
Q Consensus 230 ~~-----~~~~-----~~~~~~-~~v~~~~~v~~i~~~~~---v~~~dG~--~~~~D~vi~atG~~~~~~~l-------- 285 (446)
+. ++.+ +.+.+. ..+.....+++++.++. +.+++|. ++++|.|++|+|++||++-|
T Consensus 206 ~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~ 285 (454)
T COG1249 206 DRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVE 285 (454)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCce
Confidence 86 1111 222232 24566677888865442 7778887 68899999999999999854
Q ss_pred -CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcC
Q 013303 286 -ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 286 -~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g 342 (446)
++.|.|.+|+.++ ++.|+||++|++.. ....+.+..|++.++.++.|
T Consensus 286 ~~~rg~I~VD~~~~----------Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 286 LDDRGFIKVDDQMT----------TNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ECCCCCEEeCCccc----------cCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 3445677774444 55899999999853 34678899999999999997
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=3.4e-32 Score=262.01 Aligned_cols=278 Identities=17% Similarity=0.209 Sum_probs=200.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+|||||||||+||..|++.|+++++||+. ..||.+..... +.
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~---------------------------------~~ 51 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE---------------------------------VE 51 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce---------------------------------EC
Confidence 579999999999999999999999999999964 67888765310 01
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
++|. .+...+..++.+++.++++.++.. ++++ +|..|+... +.|+++...+ ++.||+||+|
T Consensus 52 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~v~~~~-~~~~v~~~~~-----~~~~d~vilA 112 (321)
T PRK10262 52 NWPG----------DPNDLTGPLLMERMHEHATKFETE--IIFD-HINKVDLQN-RPFRLTGDSG-----EYTCDALIIA 112 (321)
T ss_pred CCCC----------CCCCCCHHHHHHHHHHHHHHCCCE--EEee-EEEEEEecC-CeEEEEecCC-----EEEECEEEEC
Confidence 1111 122345678899999999998875 6654 677887765 6788765321 5899999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-------cc
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------ET 234 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-------~~ 234 (446)
|| +.|+.|++||.+.|.+..+|++.+.+...+.+++|+|||+|.+|+|+|..|++.+++|+++.|.+.. ..
T Consensus 113 tG--~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~ 190 (321)
T PRK10262 113 TG--ASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR 190 (321)
T ss_pred CC--CCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHH
Confidence 99 7899999999887878888888777766778999999999999999999999999999999997631 11
Q ss_pred c-ccCCCCC-CeeeccceeEEccCC----cEEecCC------cEEeecEEEEecCccCCCCCCC-----CCCeeeeCCCC
Q 013303 235 H-EKQPGYD-NMWLHSMVERANEDG----TVVFRNG------RVVSADVIMHCTGYKYNYPFLE-----TNGIVTVDDNR 297 (446)
Q Consensus 235 ~-~~~~~~~-~v~~~~~v~~i~~~~----~v~~~dG------~~~~~D~vi~atG~~~~~~~l~-----~~g~i~~~~~~ 297 (446)
+ +.+.+.+ ++.....|.++.+++ .|++.++ +++++|.||+|+|++|+..++. +.|.|.+|+..
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~ 270 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 270 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCC
Confidence 1 2222222 455567788887654 2666543 3689999999999999987643 23556666521
Q ss_pred cccccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHH
Q 013303 298 VGPLYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASV 339 (446)
Q Consensus 298 ~~~l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~ 339 (446)
+ ...+. ++.|+||++|++.... ....+-.++..+|..
T Consensus 271 ~----~~~~~-t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~ 309 (321)
T PRK10262 271 H----GNATQ-TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALD 309 (321)
T ss_pred c----ccccc-cCCCCEEECeeccCCCcceEEEEehhHHHHHHH
Confidence 1 00122 5599999999886432 223344455544443
No 8
>PLN02507 glutathione reductase
Probab=100.00 E-value=1e-32 Score=279.03 Aligned_cols=293 Identities=18% Similarity=0.231 Sum_probs=197.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEee---------CCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceeec
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVN 72 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~---------~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~ 72 (446)
+||+||||||+|+.+|..+++.|.+|+|+|+ .+.+||+|.+. ||+|++.++.+... ..++ .
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~--------GciPsK~l~~~a~~~~~~~-~ 96 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIR--------GCVPKKILVYGATFGGEFE-D 96 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeecc--------CchhHHHHHHHHHHHHHHH-H
Confidence 6899999999999999999999999999996 36799999875 99999877654422 1111 1
Q ss_pred CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEE
Q 013303 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKV 141 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v 141 (446)
... +++. ... ..-....++.+++ .......+++ +. ..++..+++ ..++|
T Consensus 97 ~~~--~G~~---~~~---------~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~i-~g~a~~vd~---~~v~V 156 (499)
T PLN02507 97 AKN--YGWE---INE---------KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK--LY-EGEGKIVGP---NEVEV 156 (499)
T ss_pred HHh--cCcc---cCC---------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EE-EEEEEEecC---CEEEE
Confidence 111 0110 000 0011223333332 2333333443 22 234444443 34666
Q ss_pred EEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC
Q 013303 142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221 (446)
Q Consensus 142 ~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~ 221 (446)
+..+ ++..++.||+|||||| +.|..|.+||.+. ..++.+....+. .+++|+|||+|.+|+|+|..+++.|+
T Consensus 157 ~~~~--g~~~~~~~d~LIIATG--s~p~~p~ipG~~~----~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~ 227 (499)
T PLN02507 157 TQLD--GTKLRYTAKHILIATG--SRAQRPNIPGKEL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGA 227 (499)
T ss_pred EeCC--CcEEEEEcCEEEEecC--CCCCCCCCCCccc----eechHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCC
Confidence 6543 3334689999999999 8999999999653 122222222222 36899999999999999999999999
Q ss_pred EEEEEEecCC-----cccc-----ccCCCC-CCeeeccceeEEccC-Cc--EEecCCcEEeecEEEEecCccCCCCCCC-
Q 013303 222 EVHIASRSVA-----DETH-----EKQPGY-DNMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGYKYNYPFLE- 286 (446)
Q Consensus 222 ~V~l~~r~~~-----~~~~-----~~~~~~-~~v~~~~~v~~i~~~-~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~- 286 (446)
+|+++++.+. +..+ +.+.+. -++..+..|+++..+ +. +.+.+|+++++|.||+|+|++|+..+|.
T Consensus 228 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l 307 (499)
T PLN02507 228 TVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNL 307 (499)
T ss_pred eEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCc
Confidence 9999998764 1111 112222 256667788888643 22 5667888899999999999999998742
Q ss_pred --------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 287 --------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 --------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.|.+|++++ ++.|+||++|++.. ....+.+..||+.++.++.|.
T Consensus 308 ~~~gl~~~~~G~I~Vd~~~~----------Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 308 EAVGVELDKAGAVKVDEYSR----------TNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred hhhCcEECCCCcEecCCCCc----------CCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 234455555544 56899999999874 344578899999999999875
No 9
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.2e-32 Score=276.37 Aligned_cols=299 Identities=17% Similarity=0.221 Sum_probs=199.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||||++||..+++.|++|+|+|+ +.+||+|.+. ||+|++.++++........+.+.......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIR--------GCVPKKLMVYGSTFGGEFEDAAGYGWTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecC--------CcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence 58999999999999999999999999999999 5799999986 99999877654422111111111000000
Q ss_pred --CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 82 --AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 82 --d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
.+.|.... ........++.++++...++.+++ +.. .++..+++ ....+. .++ .++.||+||
T Consensus 73 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~gV~--~~~-g~~~~v~~---~~v~v~-~~g----~~~~~d~lI 135 (446)
T TIGR01424 73 KARFDWKKLL------QKKDDEIARLSGLYKRLLANAGVE--LLE-GRARLVGP---NTVEVL-QDG----TTYTAKKIL 135 (446)
T ss_pred CCCcCHHHHH------HHHHHHHHHHHHHHHHHHHhCCcE--EEE-EEEEEecC---CEEEEe-cCC----eEEEcCEEE
Confidence 01110000 000000123444555666666776 443 36666643 223332 122 368999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----ccc
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DET 234 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~~ 234 (446)
|||| +.|..|++||.+. ...+.+.... ...+++|+|||+|.+|+|+|..+++.+.+|+++.+.+. +..
T Consensus 136 iATG--s~p~~p~i~G~~~----~~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~ 208 (446)
T TIGR01424 136 IAVG--GRPQKPNLPGHEL----GITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDD 208 (446)
T ss_pred EecC--CcCCCCCCCCccc----eechHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHH
Confidence 9999 8999999999753 1222222111 12478999999999999999999999999999998764 111
Q ss_pred -----cccCCCC-CCeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCC--C-------CCCeeeeCCC
Q 013303 235 -----HEKQPGY-DNMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFL--E-------TNGIVTVDDN 296 (446)
Q Consensus 235 -----~~~~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l--~-------~~g~i~~~~~ 296 (446)
.+.+.+. .++..+..|.++..++ .+.+.+|+++++|.||+|+|+.|+...| . ++|.+.+|++
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~ 288 (446)
T TIGR01424 209 MRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEY 288 (446)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCC
Confidence 1112222 2555667788886422 2566788899999999999999998753 2 3355666666
Q ss_pred CcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 297 RVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 297 ~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
.+ ++.|+||++|++.. ....+.+..||+.++.++.|.
T Consensus 289 ~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 289 SR----------TSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred Cc----------cCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 54 56899999999874 344577899999999999874
No 10
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-32 Score=252.49 Aligned_cols=257 Identities=25% Similarity=0.320 Sum_probs=202.4
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
+.+||+|||||||||+||.++.+.+++ ++|+|+ ..+||+...... .-+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~~------------------------------ven 50 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTTD------------------------------VEN 50 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCcccccee------------------------------ecC
Confidence 358999999999999999999999999 555555 567766554321 111
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
|+.++. -.++.++.+-+.+++..++.+ +.. ..|..++... +.|+|++.++ ++++++||
T Consensus 51 ypg~~~-------------~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~-~~F~v~t~~~-----~~~ak~vI 108 (305)
T COG0492 51 YPGFPG-------------GILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEG-GPFKVKTDKG-----TYEAKAVI 108 (305)
T ss_pred CCCCcc-------------CCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecC-ceEEEEECCC-----eEEEeEEE
Confidence 222221 134578889999999999987 544 7888887764 2788888775 49999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----cccc
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH 235 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~ 235 (446)
|||| ..++.|.+||...|.|+.+|.+..++. .|++|+|+|||+|.||+|-|..|++.+++||+++|++. ....
T Consensus 109 iAtG--~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~ 185 (305)
T COG0492 109 IATG--AGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILV 185 (305)
T ss_pred ECcC--CcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHH
Confidence 9999 889999999877899999999999999 89999999999999999999999999999999999886 1222
Q ss_pred ccCCCC--CCeeeccceeEEccCC--cEEecCC--c--EEeecEEEEecCccCCCCCC------CCCCeeeeCCCCcccc
Q 013303 236 EKQPGY--DNMWLHSMVERANEDG--TVVFRNG--R--VVSADVIMHCTGYKYNYPFL------ETNGIVTVDDNRVGPL 301 (446)
Q Consensus 236 ~~~~~~--~~v~~~~~v~~i~~~~--~v~~~dG--~--~~~~D~vi~atG~~~~~~~l------~~~g~i~~~~~~~~~l 301 (446)
+++.+. ..+..+..|+++.+++ .|.+.+. + ++.+|.+++++|+.|+..|+ ++.|.|.+++.+.
T Consensus 186 ~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~--- 262 (305)
T COG0492 186 ERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEME--- 262 (305)
T ss_pred HHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcc---
Confidence 333333 3556678899998863 4888774 3 47799999999999998886 4577888888765
Q ss_pred cccccCCCCCCCeEEecCCCcc
Q 013303 302 YKHVFPPVLAPGLSFVGIPQKV 323 (446)
Q Consensus 302 ~~~~~~~~~~p~l~~iG~~~~~ 323 (446)
|+.|+||++|++...
T Consensus 263 -------TsvpGifAaGDv~~~ 277 (305)
T COG0492 263 -------TSVPGIFAAGDVADK 277 (305)
T ss_pred -------cCCCCEEEeEeeccC
Confidence 779999999987643
No 11
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.4e-32 Score=275.60 Aligned_cols=289 Identities=19% Similarity=0.261 Sum_probs=193.9
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCcc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMG 79 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~ 79 (446)
+.+||+||||||||++||..|++.|++|+|+|+. .+||+|.+. ||+|++.+++... +..++ +. ..++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~-~~--~~~g 68 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNV--------GCVPKKVMWYASDLAERMH-DA--ADYG 68 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceecc--------CcCccHHHHHHHHHHHHHh-HH--hhcC
Confidence 3589999999999999999999999999999994 799999986 8999987665432 12111 11 1111
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
+... ...-....++.+ .+....++.+++ +..++.+. . +..+|.+. +
T Consensus 69 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~-~-----~~~~v~v~-~-- 125 (450)
T TIGR01421 69 FYQN------------LENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVD--VIFGHARF-T-----KDGTVEVN-G-- 125 (450)
T ss_pred cccC------------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-c-----cCCEEEEC-C--
Confidence 1100 000011222222 233444445665 55554432 1 22345542 2
Q ss_pred ceEEEEEcEEEEccCCCCCCccC-CCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303 149 VVEEETFDAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~~p-~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~ 227 (446)
..+.||+|||||| +.|+.| .+||.+. ...+..+..... .+++|+|||+|.+|+|+|..|++.|++|+++.
T Consensus 126 --~~~~~d~vIiAtG--s~p~~p~~i~g~~~----~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~ 196 (450)
T TIGR01421 126 --RDYTAPHILIATG--GKPSFPENIPGAEL----GTDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVI 196 (450)
T ss_pred --EEEEeCEEEEecC--CCCCCCCCCCCCce----eEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEe
Confidence 2689999999999 899999 8998753 122222222221 36899999999999999999999999999999
Q ss_pred ecCC-----ccc-----cccCCCC-CCeeeccceeEEccC--C--cEEecCC-cEEeecEEEEecCccCCCCCC--C---
Q 013303 228 RSVA-----DET-----HEKQPGY-DNMWLHSMVERANED--G--TVVFRNG-RVVSADVIMHCTGYKYNYPFL--E--- 286 (446)
Q Consensus 228 r~~~-----~~~-----~~~~~~~-~~v~~~~~v~~i~~~--~--~v~~~dG-~~~~~D~vi~atG~~~~~~~l--~--- 286 (446)
+.+. +.. .+.+.+. -++..+..|+++..+ + .+.+++| +++++|.||+|+|++|+.++| .
T Consensus 197 ~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g 276 (450)
T TIGR01421 197 RHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVG 276 (450)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccC
Confidence 8764 111 1112222 245566778888643 2 2667788 568999999999999999864 2
Q ss_pred ----CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 287 ----TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 ----~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.+.+|++.+ ++.|+||++|++.. ....+.+..||+.+|+++.|.
T Consensus 277 ~~~~~~G~i~vd~~~~----------T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 277 IKLNEKGQIIVDEYQN----------TNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred cEECCCCcEEeCCCCc----------CCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 234455555444 55899999999764 445678899999999999864
No 12
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=3.4e-32 Score=273.78 Aligned_cols=288 Identities=19% Similarity=0.264 Sum_probs=197.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeec-CCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~-~~~~~~~~ 80 (446)
.+||+||||||||++||..|++.|++|+|||+. .+||+|.+. ||.|++.++..........+ .+. +++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~--------gciP~k~l~~~~~~~~~~~~~~~~--~g~ 72 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNV--------GCVPKKLMWYGAQIAEAFHDYAPG--YGF 72 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhcc--------CcchHHHHHHHHHHHHHHHhHHHh--cCC
Confidence 469999999999999999999999999999985 899999875 89998866654322111111 110 111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
. ... .-.....+. +.+....++.+++ +..+ ++..++ ..+|++ ++
T Consensus 73 ~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~v~-----~~~v~~-~g--- 127 (450)
T PRK06116 73 D-VTE------------NKFDWAKLIANRDAYIDRLHGSYRNGLENNGVD--LIEG-FARFVD-----AHTVEV-NG--- 127 (450)
T ss_pred C-CCC------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc-----CCEEEE-CC---
Confidence 0 000 001112222 2233334445665 4443 444443 245666 32
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.++.||+||+||| +.|+.|++||.+. ..++..+.... ..+++|+|||+|.+|+|+|..|++.+.+|+++.+.
T Consensus 128 -~~~~~d~lViATG--s~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 199 (450)
T PRK06116 128 -ERYTADHILIATG--GRPSIPDIPGAEY----GITSDGFFALE-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG 199 (450)
T ss_pred -EEEEeCEEEEecC--CCCCCCCCCCcce----eEchhHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 3699999999999 8999999998753 33333332222 24689999999999999999999999999999987
Q ss_pred CC-----c-----cccccCCCC-CCeeeccceeEEccC--C--cEEecCCcEEeecEEEEecCccCCCCCC--C------
Q 013303 230 VA-----D-----ETHEKQPGY-DNMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGYKYNYPFL--E------ 286 (446)
Q Consensus 230 ~~-----~-----~~~~~~~~~-~~v~~~~~v~~i~~~--~--~v~~~dG~~~~~D~vi~atG~~~~~~~l--~------ 286 (446)
+. + ...+.+.+. .++..+..|.++..+ + .+.+.+|+++++|.||+|+|++|+.++| .
T Consensus 200 ~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~ 279 (450)
T PRK06116 200 DAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKL 279 (450)
T ss_pred CCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceE
Confidence 64 1 011122222 256667788888643 2 2667789999999999999999998863 2
Q ss_pred -CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 287 -TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 -~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.+.+|++.+ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 280 ~~~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 280 NEKGYIIVDEYQN----------TNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred CCCCcEecCCCCC----------cCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 344566665544 55899999999863 445578899999999999874
No 13
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2.6e-31 Score=270.96 Aligned_cols=275 Identities=19% Similarity=0.196 Sum_probs=208.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||||++||.+|++.|++|+|+++ .+||+|..... ++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~-------------------~~-------------- 255 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMG-------------------IE-------------- 255 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCc-------------------cc--------------
Confidence 46999999999999999999999999999986 48999864210 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.++ ...+..+.++.+++.++++++++. ++++++|.++.+.+ +.|.|.+.++. ++.||.||+|
T Consensus 256 ~~~-----------~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~-~~~~V~~~~g~----~i~a~~vViA 317 (517)
T PRK15317 256 NFI-----------SVPETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAA-GLIEVELANGA----VLKAKTVILA 317 (517)
T ss_pred ccC-----------CCCCCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEcCEEEEC
Confidence 010 011245678999999999999988 88899999998865 67888876543 6899999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---ccc-cc
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETH-EK 237 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~~~-~~ 237 (446)
|| +.|+.|++||.+.|.+..+|.+...+...++||+|+|||+|++|+|+|..|+..+++|+++.+.+.. ..+ ..
T Consensus 318 tG--~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~ 395 (517)
T PRK15317 318 TG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDK 395 (517)
T ss_pred CC--CCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHH
Confidence 99 7788899999877877777776655555678999999999999999999999999999999987641 111 12
Q ss_pred CCCC--CCeeeccceeEEccCC-c---EEecC---Cc--EEeecEEEEecCccCCCCCCCC------CCeeeeCCCCccc
Q 013303 238 QPGY--DNMWLHSMVERANEDG-T---VVFRN---GR--VVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRVGP 300 (446)
Q Consensus 238 ~~~~--~~v~~~~~v~~i~~~~-~---v~~~d---G~--~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~~~ 300 (446)
+.+. -++.....+.++.+++ . +.+.+ |+ ++++|.|++|+|++|+.+++.. .|.+.+|+..+
T Consensus 396 l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~-- 473 (517)
T PRK15317 396 LRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGA-- 473 (517)
T ss_pred HhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCC--
Confidence 2222 2566667788887663 2 45543 43 4889999999999999888643 34455555444
Q ss_pred ccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHHc
Q 013303 301 LYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVLS 341 (446)
Q Consensus 301 l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l~ 341 (446)
++.|+||++|++.... ....+..++..+|..+.
T Consensus 474 --------Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 474 --------TSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAF 508 (517)
T ss_pred --------CCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHH
Confidence 5589999999886432 34666777777665543
No 14
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=9.2e-32 Score=271.69 Aligned_cols=295 Identities=19% Similarity=0.160 Sum_probs=198.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
.+||+||||||+|+++|..|++.|++|+|||+.+.+||+|.+. ||.|++.++... .+..+.. ...|
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~--------gcipsk~l~~~~~~~~~~~~-----~~~~ 71 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT--------GTIPSKALREAVLRLIGFNQ-----NPLY 71 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc--------CCCCHHHHHHHHHHHHHHhh-----hhhh
Confidence 4799999999999999999999999999999988999999875 788876544321 1111100 0001
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.+++.+ ..++..++.+ ++.+..++.+++ +..+ ++..++. ..++|...+ +.
T Consensus 72 ~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~~---~~~~v~~~~--g~ 132 (461)
T PRK05249 72 SSYRVK-----------LRITFADLLARADHVINKQVEVRRGQYERNRVD--LIQG-RARFVDP---HTVEVECPD--GE 132 (461)
T ss_pred cccCCc-----------CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEecC---CEEEEEeCC--Cc
Confidence 111111 1122333333 344445555655 4433 3433332 345555433 33
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
..++.||+|||||| +.|..|++++.+. ..+.++...... ...+++|+|||+|.+|+|+|..+++.|.+|+++.++
T Consensus 133 ~~~~~~d~lviATG--s~p~~p~~~~~~~--~~v~~~~~~~~~-~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~ 207 (461)
T PRK05249 133 VETLTADKIVIATG--SRPYRPPDVDFDH--PRIYDSDSILSL-DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR 207 (461)
T ss_pred eEEEEcCEEEEcCC--CCCCCCCCCCCCC--CeEEcHHHhhch-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 34789999999999 8999988776532 123443333322 235799999999999999999999999999999987
Q ss_pred CC-----c-----cccccCCCC-CCeeeccceeEEccC-Cc--EEecCCcEEeecEEEEecCccCCCCCC--C-------
Q 013303 230 VA-----D-----ETHEKQPGY-DNMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGYKYNYPFL--E------- 286 (446)
Q Consensus 230 ~~-----~-----~~~~~~~~~-~~v~~~~~v~~i~~~-~~--v~~~dG~~~~~D~vi~atG~~~~~~~l--~------- 286 (446)
+. + ...+.+.+. .++.....|.++..+ +. +.+.+|+++++|.||+|+|++|+...+ +
T Consensus 208 ~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~ 287 (461)
T PRK05249 208 DRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEAD 287 (461)
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEec
Confidence 64 1 111112222 255566788888643 22 556788899999999999999998864 2
Q ss_pred CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 287 TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 ~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.+.+|++.+ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 288 ~~G~i~vd~~~~----------t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 288 SRGQLKVNENYQ----------TAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred CCCcEeeCCCcc----------cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 334566665554 45899999998764 344567899999999999976
No 15
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.6e-31 Score=269.75 Aligned_cols=299 Identities=18% Similarity=0.258 Sum_probs=200.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||||++||..|++.|++|+|||+. .+||+|.+. ||+|++.++++........+.+.. ++++
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~--------GciPsk~l~~~a~~~~~~~~~~~~-~g~~ 75 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNI--------GCVPSKIMIRAAHIAHLRRESPFD-DGLS 75 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecC--------CccccHHHHHHHHHHHHHhhcccc-CCcc
Confidence 479999999999999999999999999999995 799999874 899988766543321111111100 0111
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-------CCC--cE-EeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-------VDQ--VV-RLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-------l~~--~i-~~~~~V~~v~~~~~~~~~v~~~~~~~~~~ 151 (446)
.+ ..-++..++.++..+.++.+. +.. .+ ....+|..++. ..|+|++.++. ..
T Consensus 76 ~~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~---~~~~V~~~~g~--~~ 137 (468)
T PRK14694 76 AQ-------------APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE---RTLTVTLNDGG--EQ 137 (468)
T ss_pred cC-------------CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecC---CEEEEEecCCC--eE
Confidence 00 001234455555444433221 100 11 22345666643 56888876542 34
Q ss_pred EEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 152 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
++.||+||+||| +.|+.|++||++.. ..+++.+.... ...+++|+|||+|.+|+|+|..|++.+.+|+++.+...
T Consensus 138 ~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~ 212 (468)
T PRK14694 138 TVHFDRAFIGTG--ARPAEPPVPGLAET--PYLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRV 212 (468)
T ss_pred EEECCEEEEeCC--CCCCCCCCCCCCCC--ceEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 799999999999 89999999998753 23444332221 12468999999999999999999999999999987532
Q ss_pred ----c----ccc-ccCCCCC-CeeeccceeEEccCCc-EEe-cCCcEEeecEEEEecCccCCCCCCC--------CCCee
Q 013303 232 ----D----ETH-EKQPGYD-NMWLHSMVERANEDGT-VVF-RNGRVVSADVIMHCTGYKYNYPFLE--------TNGIV 291 (446)
Q Consensus 232 ----~----~~~-~~~~~~~-~v~~~~~v~~i~~~~~-v~~-~dG~~~~~D~vi~atG~~~~~~~l~--------~~g~i 291 (446)
+ ..+ +.+.+.+ ++..+..|.++..++. +.+ .++.++++|.||+|+|..|+..++. +.|.+
T Consensus 213 l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i 292 (468)
T PRK14694 213 LSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAI 292 (468)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeE
Confidence 0 011 1112222 4556678888865443 222 2445799999999999999998752 23456
Q ss_pred eeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
.+|++++ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 293 ~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 293 RIDEHLQ----------TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred eeCCCcc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 6666654 55899999998863 344577889999999999875
No 16
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=100.00 E-value=6.1e-33 Score=249.53 Aligned_cols=199 Identities=32% Similarity=0.534 Sum_probs=138.1
Q ss_pred EEECcChHHHHHHHHHHHCCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCCC
Q 013303 6 AVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYP 84 (446)
Q Consensus 6 ~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 84 (446)
+||||||+||++|.+|++.|++ ++|||+++.+||.|........ + .++.... ..+.++++.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~-----------~---~~~~~~~----~~~~~~~~~ 62 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTR-----------L---HSPSFFS----SDFGLPDFE 62 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT---------------BSSSCCT----GGSS--CCC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCc-----------c---ccCcccc----ccccCCccc
Confidence 7999999999999999999998 9999999999999985321100 0 0000000 011111211
Q ss_pred CCcC-CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccC
Q 013303 85 FVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163 (446)
Q Consensus 85 ~~~~-~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG 163 (446)
.... ..+.......+++++++.+|++++++++++. ++++++|+++++.+ +.|+|+++++ +++.||+||+|||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~-~~w~v~~~~~----~~~~a~~VVlAtG 135 (203)
T PF13738_consen 63 SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDG-DGWTVTTRDG----RTIRADRVVLATG 135 (203)
T ss_dssp HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEET-TTEEEEETTS-----EEEEEEEEE---
T ss_pred ccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEec-cEEEEEEEec----ceeeeeeEEEeee
Confidence 1000 0000011356789999999999999999998 99999999999997 6699999776 3788999999999
Q ss_pred CCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 164 HFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 164 ~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
.++.|+.|.+|| ..+. ..+|+.++.++..+++|+|+|||+|.||+|+|..|++.+++|++++|++.
T Consensus 136 ~~~~p~~p~~~g-~~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 136 HYSHPRIPDIPG-SAFR-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp SSCSB---S-TT-GGCS-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ccCCCCcccccc-cccc-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 999999999999 2222 78999999999999999999999999999999999999999999999863
No 17
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=5.8e-32 Score=274.57 Aligned_cols=298 Identities=18% Similarity=0.239 Sum_probs=196.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||||++||..+++.|.+|+|+|+. .+||+|.+. ||+|+|.++.+........+... +++.
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~--------GCiPsK~l~~~a~~~~~~~~~~~--~Gi~ 116 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNV--------GCVPKKIMFNAASIHDILENSRH--YGFD 116 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccccc--------CCCCCchhhhhcccHHHHHHHHh--cCCC
Confidence 579999999999999999999999999999995 799999986 99999988876543221111111 1111
Q ss_pred ---CCCCCcCCCCCCCCCCCCC-CHHHH----HHHHHHHHHHhCCCCcEEeCeE-EEE-----E---EE-------cCCC
Q 013303 82 ---AYPFVARNYEGSVDLRRYP-GHEEV----LRYLQNFAREFGVDQVVRLHTE-VLN-----A---RL-------VESN 137 (446)
Q Consensus 82 ---d~~~~~~~~~~~~~~~~~~-~~~~v----~~yl~~~~~~~~l~~~i~~~~~-V~~-----v---~~-------~~~~ 137 (446)
.+.|. ... ...++ .+.+.+..++.+++ +..+.- +.+ | .. .+++
T Consensus 117 ~~~~~d~~-----------~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~ 183 (561)
T PTZ00058 117 TQFSFNLP-----------LLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESDDD 183 (561)
T ss_pred ccCccCHH-----------HHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccccc
Confidence 01110 000 11222 22233334445555 433321 111 0 00 0001
Q ss_pred ceEEEE----EeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHH
Q 013303 138 KWKVKS----RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIK 213 (446)
Q Consensus 138 ~~~v~~----~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia 213 (446)
..+|.. ...++ .+++||+|||||| +.|..|++||.+. ++++.++..... +++|+|||+|.+|+|+|
T Consensus 184 ~~~v~~~~~~~~~~g--~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A 253 (561)
T PTZ00058 184 EVTIVSAGVSQLDDG--QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFKIKE--AKRIGIAGSGYIAVELI 253 (561)
T ss_pred cceeeeccceecCCC--cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhhccC--CCEEEEECCcHHHHHHH
Confidence 122211 01111 3699999999999 8999999999752 445544433322 79999999999999999
Q ss_pred HHHhccCCEEEEEEecCC-----ccc-----cccCCCC-CCeeeccceeEEccCC--c--EEecCC-cEEeecEEEEecC
Q 013303 214 RDLAGFAKEVHIASRSVA-----DET-----HEKQPGY-DNMWLHSMVERANEDG--T--VVFRNG-RVVSADVIMHCTG 277 (446)
Q Consensus 214 ~~l~~~~~~V~l~~r~~~-----~~~-----~~~~~~~-~~v~~~~~v~~i~~~~--~--v~~~dG-~~~~~D~vi~atG 277 (446)
..+++.|++|+++.+.+. +.. .+.+.+. -++..+..|.++.+++ . +.+.++ +++++|.|++|+|
T Consensus 254 ~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G 333 (561)
T PTZ00058 254 NVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG 333 (561)
T ss_pred HHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC
Confidence 999999999999998764 111 1122222 2566677788887532 2 334454 4699999999999
Q ss_pred ccCCCCCCC--------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc---------------------------
Q 013303 278 YKYNYPFLE--------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--------------------------- 322 (446)
Q Consensus 278 ~~~~~~~l~--------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--------------------------- 322 (446)
++|+..+|. +.|.|.+|++++ ++.|+||++|++..
T Consensus 334 r~Pn~~~L~l~~~~~~~~~G~I~VDe~lq----------Ts~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 403 (561)
T PTZ00058 334 RSPNTEDLNLKALNIKTPKGYIKVDDNQR----------TSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKEN 403 (561)
T ss_pred CCCCccccCccccceecCCCeEEECcCCc----------cCCCCEEEeEeccCccccccccccccccccccccccccccc
Confidence 999988763 345677777655 66999999998865
Q ss_pred --------cCchhHHHHHHHHHHHHHcCC
Q 013303 323 --------VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 323 --------~~~~~~~~~qa~~~a~~l~g~ 343 (446)
....+.+..||+.+|.++.|.
T Consensus 404 ~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 404 TSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred cccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 233467889999999999875
No 18
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-31 Score=268.57 Aligned_cols=294 Identities=18% Similarity=0.181 Sum_probs=193.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
++||+||||||+|+.+|..|++.|++|+|+|+.+.+||+|.+. ||.|++.++... .+..++ +.......+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~--------gciP~K~l~~~a~~~~~~~-~~~~~g~~~ 74 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNV--------GCIPSKALLHVAKVIEEAK-ALAEHGIVF 74 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCC--------CcccHHHHHHHHHHHHHHh-hhhhcCccc
Confidence 5899999999999999999999999999999988899999875 899988766433 222221 111100000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----------FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~-----------~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.. ...+...+.++... ..+..+++ +..+ ++..+ +..+|.+...+++
T Consensus 75 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~a~~~-----~~~~v~v~~~~g~ 131 (471)
T PRK06467 75 GE---------------PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVT--VVNG-LGKFT-----GGNTLEVTGEDGK 131 (471)
T ss_pred CC---------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEc-----cCCEEEEecCCCc
Confidence 00 01122344433333 23334554 4333 33332 2234444433333
Q ss_pred eEEEEEcEEEEccCCCCCCc-cCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 150 VEEETFDAVVVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
..++.||+|||||| +.|. .|.+++... .++.+.+..... ..+++|+|||+|.+|+|+|..+++.|.+|+++.+
T Consensus 132 ~~~~~~d~lViATG--s~p~~~p~~~~~~~---~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~ 205 (471)
T PRK06467 132 TTVIEFDNAIIAAG--SRPIQLPFIPHDDP---RIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM 205 (471)
T ss_pred eEEEEcCEEEEeCC--CCCCCCCCCCCCCC---cEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence 35799999999999 8887 455555322 233333322222 2358999999999999999999999999999998
Q ss_pred cCC-----cc-----ccccCCCCCCeeeccceeEEccCC-c--EEecCC----cEEeecEEEEecCccCCCCCCC-----
Q 013303 229 SVA-----DE-----THEKQPGYDNMWLHSMVERANEDG-T--VVFRNG----RVVSADVIMHCTGYKYNYPFLE----- 286 (446)
Q Consensus 229 ~~~-----~~-----~~~~~~~~~~v~~~~~v~~i~~~~-~--v~~~dG----~~~~~D~vi~atG~~~~~~~l~----- 286 (446)
.+. +. ..+.+.+..++..+..|.++..++ . +.+.++ +++++|.||+|+|++|+.++|.
T Consensus 206 ~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~g 285 (471)
T PRK06467 206 FDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAG 285 (471)
T ss_pred CCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcC
Confidence 764 11 111222224566677788886332 2 445443 3589999999999999998642
Q ss_pred ----CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 287 ----TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 ----~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.|.+|++++ ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 286 l~~~~~G~I~Vd~~~~----------t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 286 VEVDERGFIRVDKQCR----------TNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred ceECCCCcEeeCCCcc----------cCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 345566666655 55899999998753 345677899999999999875
No 19
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4e-31 Score=267.04 Aligned_cols=293 Identities=19% Similarity=0.234 Sum_probs=195.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~~ 80 (446)
.+||+||||||||++||..|++.|++|+|+|+.. +||+|.+. ||.|++.+++... ++..+..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~--------gciP~k~l~~~~~~~~~~~~~-------- 66 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR--------GCIPSKALLHAAERADEARHS-------- 66 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec--------ccCCcHHHHHhhhHHHHHHHH--------
Confidence 5799999999999999999999999999999976 99999875 8999887665442 2221110
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----------FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~-----------~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
..|.+.. ....+...++.+|... ..++.+++ +..+ +++.++. ..++|...++ .
T Consensus 67 ~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~~---~~~~v~~~~~--~ 130 (462)
T PRK06416 67 EDFGIKA--------ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRG-EAKLVDP---NTVRVMTEDG--E 130 (462)
T ss_pred HhcCccc--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEccC---CEEEEecCCC--c
Confidence 1111100 0112344566666443 34445555 4443 3444332 2344433221 1
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCcc-EEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~-~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
.++.||+|||||| +.|..| ||.+. .+. +.++.+.... ...+++|+|||+|.+|+|+|..|++.+.+|+++.+
T Consensus 131 -~~~~~d~lViAtG--s~p~~~--pg~~~-~~~~v~~~~~~~~~-~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~ 203 (462)
T PRK06416 131 -QTYTAKNIILATG--SRPREL--PGIEI-DGRVIWTSDEALNL-DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEA 203 (462)
T ss_pred -EEEEeCEEEEeCC--CCCCCC--CCCCC-CCCeEEcchHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEc
Confidence 4789999999999 777654 56542 233 3333332222 23468999999999999999999999999999998
Q ss_pred cCC-----cc----cc-ccCCCC-CCeeeccceeEEccCC-c--EEecCC---cEEeecEEEEecCccCCCCCCC--C--
Q 013303 229 SVA-----DE----TH-EKQPGY-DNMWLHSMVERANEDG-T--VVFRNG---RVVSADVIMHCTGYKYNYPFLE--T-- 287 (446)
Q Consensus 229 ~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~dG---~~~~~D~vi~atG~~~~~~~l~--~-- 287 (446)
.+. +. .+ +.+.+. .++..+..|.++..++ . +.+.+| +++++|.||+|+|++|+..++. .
T Consensus 204 ~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~g 283 (462)
T PRK06416 204 LPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELG 283 (462)
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcC
Confidence 764 10 11 112222 2566677888887543 2 445666 6789999999999999988752 2
Q ss_pred ----CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303 288 ----NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 288 ----~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
.|.+.+|++.+ ++.|+||++|++.. ....+.+..||+.+|.++.|..
T Consensus 284 l~~~~g~i~vd~~~~----------t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~ 335 (462)
T PRK06416 284 VKTDRGFIEVDEQLR----------TNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP 335 (462)
T ss_pred CeecCCEEeECCCCc----------cCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 34455665544 55899999998864 3455778999999999999853
No 20
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.8e-31 Score=269.28 Aligned_cols=290 Identities=21% Similarity=0.235 Sum_probs=194.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~ 80 (446)
++||+||||||||++||..|++.|++|+|+|+. .+||.|.+. ||+|++.++..... ..++. .. .+++
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~-~~--~~g~ 72 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT--------GCVPTKTLIASARAAHLARR-AA--EYGV 72 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc--------ccCcHHHHHHHHHHHHHHHH-HH--hcCc
Confidence 479999999999999999999999999999985 789999875 89998876654321 11111 00 0111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~-----------~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
+ ... ..-+...++.++.. ...++. +++ ++.++.+. + +..+|++. +
T Consensus 73 ~---~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~-~-----~~~~v~v~-~-- 129 (463)
T PRK06370 73 S---VGG---------PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF-E-----SPNTVRVG-G-- 129 (463)
T ss_pred c---cCc---------cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE-c-----cCCEEEEC-c--
Confidence 1 000 00112334443332 333333 444 55554432 1 23455552 1
Q ss_pred ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
.++.||+||+||| +.|+.|++||.+.. .++++.+..... ..+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus 130 --~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~ 202 (463)
T PRK06370 130 --ETLRAKRIFINTG--ARAAIPPIPGLDEV--GYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIER 202 (463)
T ss_pred --EEEEeCEEEEcCC--CCCCCCCCCCCCcC--ceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEc
Confidence 3689999999999 89999999998652 234444333222 3478999999999999999999999999999998
Q ss_pred cCC-----c----ccc-ccCCCCC-CeeeccceeEEccCC-c--EEec--C-CcEEeecEEEEecCccCCCCCC--C---
Q 013303 229 SVA-----D----ETH-EKQPGYD-NMWLHSMVERANEDG-T--VVFR--N-GRVVSADVIMHCTGYKYNYPFL--E--- 286 (446)
Q Consensus 229 ~~~-----~----~~~-~~~~~~~-~v~~~~~v~~i~~~~-~--v~~~--d-G~~~~~D~vi~atG~~~~~~~l--~--- 286 (446)
.+. + ..+ ..+.+.+ ++..+..|.++..++ . +.+. + ++++++|.||+|+|++|+...| +
T Consensus 203 ~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g 282 (463)
T PRK06370 203 GPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAG 282 (463)
T ss_pred CCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhC
Confidence 764 1 011 1122222 556667888887543 2 3332 3 4568999999999999998843 2
Q ss_pred ----CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 287 ----TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 ----~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.+.+|++++ ++.|+||++|++... .....+..||+.+|+++.+.
T Consensus 283 ~~~~~~G~i~vd~~l~----------t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 283 VETDARGYIKVDDQLR----------TTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred ceECCCCcEeECcCCc----------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 345566666555 558999999988643 33466789999999999875
No 21
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.98 E-value=5.8e-31 Score=268.03 Aligned_cols=275 Identities=18% Similarity=0.199 Sum_probs=205.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||||++||..|++.|++|+|++. .+||++..... +.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~-------------------~~-------------- 256 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG-------------------IE-------------- 256 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC-------------------cc--------------
Confidence 47999999999999999999999999999985 58998764210 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.++ ........++.+++.++++++++. ++.+++|.+++... +.|.+++.++. .+.||+||+|
T Consensus 257 ~~~-----------~~~~~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~-~~~~v~~~~g~----~i~~d~lIlA 318 (515)
T TIGR03140 257 NLI-----------SVPYTTGSQLAANLEEHIKQYPID--LMENQRAKKIETED-GLIVVTLESGE----VLKAKSVIVA 318 (515)
T ss_pred ccc-----------ccCCCCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecC-CeEEEEECCCC----EEEeCEEEEC
Confidence 000 001124578889999999999988 88899999998765 67888776543 6999999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---c-cccc
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---E-THEK 237 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~-~~~~ 237 (446)
|| +.|+.|++||.+.+.+..++.....+...+.+++|+|||+|.+|+|+|..|+..+++|+++.+.+.. . ....
T Consensus 319 tG--a~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~ 396 (515)
T TIGR03140 319 TG--ARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDK 396 (515)
T ss_pred CC--CCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHH
Confidence 99 7788899999766656556655444444567899999999999999999999999999999987641 1 1122
Q ss_pred CCC--CCCeeeccceeEEccCC-c---EEecCC-----cEEeecEEEEecCccCCCCCCC------CCCeeeeCCCCccc
Q 013303 238 QPG--YDNMWLHSMVERANEDG-T---VVFRNG-----RVVSADVIMHCTGYKYNYPFLE------TNGIVTVDDNRVGP 300 (446)
Q Consensus 238 ~~~--~~~v~~~~~v~~i~~~~-~---v~~~dG-----~~~~~D~vi~atG~~~~~~~l~------~~g~i~~~~~~~~~ 300 (446)
+.+ .-++..+..+.++.+++ . |.+.++ +++++|.||+|+|+.|+.+++. +.|.|.+|++.+
T Consensus 397 l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~-- 474 (515)
T TIGR03140 397 LKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGR-- 474 (515)
T ss_pred HhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCC--
Confidence 222 23566677888887652 2 666543 3588999999999999988764 345566666655
Q ss_pred ccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHHc
Q 013303 301 LYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVLS 341 (446)
Q Consensus 301 l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l~ 341 (446)
++.|+||++|++.... ....+..||..+|..+.
T Consensus 475 --------Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~ 509 (515)
T TIGR03140 475 --------TSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAF 509 (515)
T ss_pred --------CCCCCEEEcccccCCccceEEEEEccHHHHHHHHH
Confidence 5689999999886532 34567778887777654
No 22
>PRK14727 putative mercuric reductase; Provisional
Probab=99.98 E-value=1.8e-31 Score=269.71 Aligned_cols=301 Identities=17% Similarity=0.199 Sum_probs=191.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
++||+||||||+|+++|..|++.|.+|+|+|+.+.+||+|.+. ||+|++.+++...+.......+. +++.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~--------GciPsk~l~~~a~~~~~~~~~~~--~g~~ 85 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV--------GCVPSKILIRAAQLAHQQRSNPF--DGVE 85 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc--------cccccHHHHHHHHHHHHHhhccc--cCcc
Confidence 5799999999999999999999999999999988999999975 89999877654433222211111 1111
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CCCcEEeCeEEEEE----EEcCCCceEEEEEeCCCceEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNA----RLVESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~---l~~~i~~~~~V~~v----~~~~~~~~~v~~~~~~~~~~~~~ 154 (446)
... +. .+...+..+......+.. ....+..+..|.-+ ...+.+.+.|...+ ++..++.
T Consensus 86 ~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~--g~~~~~~ 150 (479)
T PRK14727 86 AVA------------PS-IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHD--GGERVLA 150 (479)
T ss_pred cCC------------Cc-cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCC--CceEEEE
Confidence 000 00 112233222222211110 00000111111111 11221445555433 3334799
Q ss_pred EcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303 155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (446)
Q Consensus 155 ~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--- 231 (446)
||+|||||| +.|+.|++||.+.. ...++.+.... ...+++|+|||+|.+|+|+|..+++.|.+|+++.+...
T Consensus 151 ~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~ 225 (479)
T PRK14727 151 ADRCLIATG--STPTIPPIPGLMDT--PYWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR 225 (479)
T ss_pred eCEEEEecC--CCCCCCCCCCcCcc--ceecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc
Confidence 999999999 89999999997542 22222221111 12468999999999999999999999999999987532
Q ss_pred -ccc----c-ccCCCCC-CeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCCCC---------CCCeee
Q 013303 232 -DET----H-EKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPFLE---------TNGIVT 292 (446)
Q Consensus 232 -~~~----~-~~~~~~~-~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~l~---------~~g~i~ 292 (446)
+.. + +.+.+.+ ++..+..|+++..++ . +.+.+ .++++|.||+|+|+.|+..+|. ..|.|.
T Consensus 226 ~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~ 304 (479)
T PRK14727 226 EDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIV 304 (479)
T ss_pred chHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEE
Confidence 111 1 1122222 455667788886432 2 33334 4689999999999999988642 234566
Q ss_pred eCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
+|+.++ ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus 305 Vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 305 VNPAME----------TSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred ECCCee----------cCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 666554 568999999998743 44577889999999999875
No 23
>PRK07846 mycothione reductase; Reviewed
Probab=99.98 E-value=1.1e-31 Score=268.98 Aligned_cols=295 Identities=17% Similarity=0.209 Sum_probs=195.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~ 80 (446)
.+||+||||||+|.+||.. ..|.+|+|+|+ +.+||+|.+. ||+|+|.++++... ..++. .+. ++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~--------GCiPsK~l~~~a~~~~~~~~-~~~--~g~ 66 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV--------GCIPTKMFVYAADVARTIRE-AAR--LGV 66 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc--------CcchhHHHHHHHHHHHHHHH-HHh--CCc
Confidence 3799999999999998875 46999999998 5799999986 99999977755432 22211 111 111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CCCc-E-EeCeEEEEEE-EcCCCceEEEEEeCCCceEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQV-V-RLHTEVLNAR-LVESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~---l~~~-i-~~~~~V~~v~-~~~~~~~~v~~~~~~~~~~~~~ 154 (446)
. . ...-....++.++.....+++. .... + ..+.++..=+ ... +..+|++.++. ++.
T Consensus 67 ~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~-~~~~V~v~~g~----~~~ 128 (451)
T PRK07846 67 D-A------------ELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI-GPKTLRTGDGE----EIT 128 (451)
T ss_pred c-C------------CCCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe-cCCEEEECCCC----EEE
Confidence 0 0 0001244566666655544431 1100 0 0111111100 001 34567665432 689
Q ss_pred EcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303 155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (446)
Q Consensus 155 ~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--- 231 (446)
||+|||||| +.|+.|++||.+.. .+..+.+.... ...+++|+|||+|.+|+|+|..|++.|.+|+++.+++.
T Consensus 129 ~d~lViATG--s~p~~p~i~g~~~~--~~~~~~~~~~l-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~ 203 (451)
T PRK07846 129 ADQVVIAAG--SRPVIPPVIADSGV--RYHTSDTIMRL-PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR 203 (451)
T ss_pred eCEEEEcCC--CCCCCCCCCCcCCc--cEEchHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence 999999999 89999999986532 12222222111 22468999999999999999999999999999999764
Q ss_pred --cc----ccccCCCC-CCeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCCCC---------CCCeee
Q 013303 232 --DE----THEKQPGY-DNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPFLE---------TNGIVT 292 (446)
Q Consensus 232 --~~----~~~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~l~---------~~g~i~ 292 (446)
+. .+.++.+. -++..+..|.+++.++ . +.+.+|+++++|.||+|+|++|+.++|. +.|.+.
T Consensus 204 ~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~ 283 (451)
T PRK07846 204 HLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVV 283 (451)
T ss_pred ccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEe
Confidence 11 11112222 2556677888886543 2 5667889999999999999999999863 334455
Q ss_pred eCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
+|++++ ++.|+||++|++... ...+.+..||+++++++.+.
T Consensus 284 Vd~~~~----------Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 284 VDEYQR----------TSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred ECCCcc----------cCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 665554 558999999998743 44577889999999999865
No 24
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.98 E-value=2e-30 Score=265.92 Aligned_cols=274 Identities=21% Similarity=0.278 Sum_probs=203.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+|||||||||+||..|++.|++|+|||+. .+||.+..... ..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~---------------------------------i~ 49 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSE---------------------------------VV 49 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccc---------------------------------cc
Confidence 479999999999999999999999999999995 78998764210 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
++|. ....++.++.+++.+.+++++++ + .+++|+.++... ..+.|.+.++ .+.+++||+|
T Consensus 50 ~~pg-----------~~~~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~-~~~~V~~~~g-----~~~a~~lVlA 109 (555)
T TIGR03143 50 NYPG-----------ILNTTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDG-DIKTIKTARG-----DYKTLAVLIA 109 (555)
T ss_pred cCCC-----------CcCCCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecC-CEEEEEecCC-----EEEEeEEEEC
Confidence 1111 11234578889999999999987 4 478899988754 4567766433 5789999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----ccccc
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEK 237 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~~~~ 237 (446)
|| +.|+.|++||.+.+.+..++.+...+...+.+++|+|||+|.+|+|+|..|++.+++|+++.|.+.. ....+
T Consensus 110 TG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~ 187 (555)
T TIGR03143 110 TG--ASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEK 187 (555)
T ss_pred CC--CccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHH
Confidence 99 7899999999876777777776666666678999999999999999999999999999999998741 11112
Q ss_pred CCC--CCCeeeccceeEEccCCcE---Ee---cCCcEE----eecE----EEEecCccCCCCCCC------CCCeeeeCC
Q 013303 238 QPG--YDNMWLHSMVERANEDGTV---VF---RNGRVV----SADV----IMHCTGYKYNYPFLE------TNGIVTVDD 295 (446)
Q Consensus 238 ~~~--~~~v~~~~~v~~i~~~~~v---~~---~dG~~~----~~D~----vi~atG~~~~~~~l~------~~g~i~~~~ 295 (446)
+.. ...+..+..|.++.+++.+ .+ .+|++. ++|. ||+|+|+.|+..++. +.|.|.+|+
T Consensus 188 ~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~ 267 (555)
T TIGR03143 188 VKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNE 267 (555)
T ss_pred HHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCC
Confidence 222 2356667788888765542 22 357643 3666 999999999988754 345666666
Q ss_pred CCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHc
Q 013303 296 NRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~ 341 (446)
+++ ++.|+||++|++.. ......+..||+.+|.++.
T Consensus 268 ~~~----------Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 268 DME----------TNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred ccc----------cCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 655 55899999998752 2234567788888777764
No 25
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.98 E-value=2.1e-31 Score=269.05 Aligned_cols=297 Identities=20% Similarity=0.226 Sum_probs=195.8
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
+||+||||||||++||..|++.|++|+|+|+.. +||+|.+. ||+|++.++......+...... +++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~---~g~~~ 68 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNV--------GCVPSKMLLRAAEVAHYARKPP---FGGLA 68 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeee--------cEEccHHHHHHHHHHHHhhccC---ccccc
Confidence 599999999999999999999999999999864 99999875 8999987665442211111110 11100
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHH-----HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYL-----QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl-----~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~ 157 (446)
...... ........+++..++ ....++++++ +..+ ++..+ +..+|++.++ ...+.||+
T Consensus 69 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~~-----~~~~v~v~~g---~~~~~~~~ 131 (463)
T TIGR02053 69 ATVAVD------FGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRG-RARFK-----DPKTVKVDLG---REVRGAKR 131 (463)
T ss_pred CCCccC------HHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEE-EEEEc-----cCCEEEEcCC---eEEEEeCE
Confidence 000000 000111123333333 2344555665 4433 33322 2356666442 23588999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----c
Q 013303 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----D 232 (446)
Q Consensus 158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~ 232 (446)
||+||| +.|+.|++||.+.. .++++.+..... ..+++|+|||+|.+|+|+|..|++.+.+|+++.+.+. +
T Consensus 132 lIiATG--s~p~~p~i~G~~~~--~~~~~~~~~~~~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d 206 (463)
T TIGR02053 132 FLIATG--ARPAIPPIPGLKEA--GYLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREE 206 (463)
T ss_pred EEEcCC--CCCCCCCCCCcccC--ceECchhhhCcc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccC
Confidence 999999 89999999998754 244443333222 2358999999999999999999999999999998764 1
Q ss_pred ----ccc-ccCCCC-CCeeeccceeEEccCCc---EEecC---CcEEeecEEEEecCccCCCCCC--C-------CCCee
Q 013303 233 ----ETH-EKQPGY-DNMWLHSMVERANEDGT---VVFRN---GRVVSADVIMHCTGYKYNYPFL--E-------TNGIV 291 (446)
Q Consensus 233 ----~~~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~d---G~~~~~D~vi~atG~~~~~~~l--~-------~~g~i 291 (446)
..+ +.+.+. -++.....|.++..++. +.+.+ ++++++|.||+|+|++|+.+.| + +.|.+
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i 286 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGI 286 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcE
Confidence 111 112222 25566677888865432 44432 3578999999999999998843 2 33456
Q ss_pred eeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
.+|+.++ ++.|+||++|++... ...+.+..||+.+|.++.+.
T Consensus 287 ~vd~~~~----------Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 287 LVDETLR----------TSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred eECCCcc----------CCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 6665554 558999999988653 34577899999999999885
No 26
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.97 E-value=4.6e-31 Score=265.37 Aligned_cols=302 Identities=18% Similarity=0.259 Sum_probs=195.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeC--------CCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRV 71 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~--------~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~ 71 (446)
.+||+||||||+|..||..+++. |.+|+|+|+. ..+||+|.+. ||+|+|.++++... ..++.
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~--------GCiPsK~l~~~a~~~~~~~~ 74 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV--------GCVPKKLMVTGAQYMDTLRE 74 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc--------CCccHHHHHHHHHHHHHHHH
Confidence 58999999999999999999997 8999999974 5799999986 99999988766532 22221
Q ss_pred cCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCCCcEEeCeEEEEEE---EcCCCceEEEEEeC
Q 013303 72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRLHTEVLNAR---LVESNKWKVKSRKK 146 (446)
Q Consensus 72 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~--~l~~~i~~~~~V~~v~---~~~~~~~~v~~~~~ 146 (446)
... +++.. .. ...-.....+.++..+..++. +....+.-...|+-+. ... +..+|.+...
T Consensus 75 -~~~--~gi~~-~~----------~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~-~~~~v~V~~~ 139 (486)
T TIGR01423 75 -SAG--FGWEF-DR----------SSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALE-DKNVVLVRES 139 (486)
T ss_pred -hhc--cCeec-cC----------CccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEc-cCCEEEEeec
Confidence 111 11100 00 000112234444433333221 0000000001122111 111 3456666531
Q ss_pred ---CC-ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhcc---
Q 013303 147 ---DD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGF--- 219 (446)
Q Consensus 147 ---~~-~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~--- 219 (446)
.+ ..+++.||+|||||| +.|..|++||.+. ...+.+..... ..+++|+|||+|.+|+|+|..++..
T Consensus 140 ~~~~~~~~~~~~~d~lIIATG--s~p~~p~i~G~~~----~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~ 212 (486)
T TIGR01423 140 ADPKSAVKERLQAEHILLATG--SWPQMLGIPGIEH----CISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPR 212 (486)
T ss_pred cCCCCCcceEEECCEEEEecC--CCCCCCCCCChhh----eechhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccC
Confidence 11 135799999999999 8999999999753 22222211111 2468999999999999999877654
Q ss_pred CCEEEEEEecCC-----cc-----ccccCCCCC-CeeeccceeEEccC--C--cEEecCCcEEeecEEEEecCccCCCCC
Q 013303 220 AKEVHIASRSVA-----DE-----THEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGYKYNYPF 284 (446)
Q Consensus 220 ~~~V~l~~r~~~-----~~-----~~~~~~~~~-~v~~~~~v~~i~~~--~--~v~~~dG~~~~~D~vi~atG~~~~~~~ 284 (446)
|.+|+++.+.+. +. ..+.+.+.+ ++..+..++++..+ + .+.+.+|+++++|.||+|+|++|+..+
T Consensus 213 G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 213 GGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred CCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 899999998764 11 112222222 56667778888642 2 266778889999999999999999886
Q ss_pred CC---------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 285 LE---------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 285 l~---------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+. +.|.|.+|+.++ ++.|+||++|++.. ....+.+..||+.++.++.|.
T Consensus 293 l~l~~~gl~~~~~G~I~Vd~~l~----------Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 293 LQLDKVGVELTKKGAIQVDEFSR----------TNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred CCchhhCceECCCCCEecCCCCc----------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 52 345566666554 55899999999874 345678899999999999874
No 27
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=3.7e-31 Score=267.20 Aligned_cols=295 Identities=19% Similarity=0.207 Sum_probs=195.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||+|++||+.|++.|.+|+|||+ +.+||+|.+. ||.|++.+++....-....+. .
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~--------gc~psk~l~~~~~~~~~~~~~-------~ 66 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNV--------GCIPSKALIAAAEAFHEAKHA-------E 66 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceecc--------ceeeHHHHHHHHHHHHHHHHH-------H
Confidence 57999999999999999999999999999999 7899999875 888887665543221111111 1
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcE-E--e-CeEEEEEEE---cCCCceEEEEEeCCCceEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV-R--L-HTEVLNARL---VESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i-~--~-~~~V~~v~~---~~~~~~~v~~~~~~~~~~~~~ 154 (446)
.|.+.. .....+..++.+++.+.++++.-. + . + ...|.-+.. .- +.+++.+ ++ .++.
T Consensus 67 ~~gi~~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~g~~~~~-~~~~v~v-~~----~~~~ 130 (460)
T PRK06292 67 EFGIHA--------DGPKIDFKKVMARVRRERDRFVGG--VVEGLEKKPKIDKIKGTARFV-DPNTVEV-NG----ERIE 130 (460)
T ss_pred hcCCCc--------CCCccCHHHHHHHHHHHHHHHhcc--hHHHHHhhCCCEEEEEEEEEc-cCCEEEE-Cc----EEEE
Confidence 111110 112356678888888777755322 1 0 0 011111110 01 2345555 22 3799
Q ss_pred EcEEEEccCCCCCCccCCCCCCCCCCc-cEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--
Q 013303 155 FDAVVVCNGHFSVPRLAQVPGIDSWPG-KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (446)
Q Consensus 155 ~d~VVvAtG~~s~p~~p~i~G~~~~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-- 231 (446)
||+||+||| +. .|.+||.....+ .++++.+... ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 131 ~d~lIiATG--s~--~p~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 131 AKNIVIATG--SR--VPPIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred eCEEEEeCC--CC--CCCCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 999999999 55 556666643222 2333322211 123579999999999999999999999999999998764
Q ss_pred ---ccc----c-ccCCCCCCeeeccceeEEccCC--cEEe--cCC--cEEeecEEEEecCccCCCCCCC---------CC
Q 013303 232 ---DET----H-EKQPGYDNMWLHSMVERANEDG--TVVF--RNG--RVVSADVIMHCTGYKYNYPFLE---------TN 288 (446)
Q Consensus 232 ---~~~----~-~~~~~~~~v~~~~~v~~i~~~~--~v~~--~dG--~~~~~D~vi~atG~~~~~~~l~---------~~ 288 (446)
+.. + +.+.+.-++..+..|.+++.++ .+.+ .+| +++++|.||+|+|++|+.++|. +.
T Consensus 206 ~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~ 285 (460)
T PRK06292 206 PLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDER 285 (460)
T ss_pred cchhHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCC
Confidence 111 1 1122224455677888886543 2543 344 4688999999999999998632 34
Q ss_pred CeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
|.+.+|++.+ ++.|+||++|++... ...+.+..||+.+|.++.+.
T Consensus 286 g~i~vd~~~~----------ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 286 GRPVVDEHTQ----------TSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred CcEeECCCcc----------cCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 5566666655 558999999998643 34577899999999999884
No 28
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=2.1e-30 Score=261.68 Aligned_cols=300 Identities=19% Similarity=0.250 Sum_probs=190.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
++||+||||||||++||..|++.|.+|+|+|+. .+||+|... ||.|++.++... .+..+...... ++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~~~~~--~gi 72 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV--------GCIPSKALLRNAELAHIFTKEAKT--FGI 72 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC--------CccccHHHHhhHHHHHHHHHHHHh--cCC
Confidence 469999999999999999999999999999984 799999875 899988666443 22222211111 111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCCCcEEe-CeEEEEEEEcC--CCceEEEEEeCCCceEEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRL-HTEVLNARLVE--SNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~--~l~~~i~~-~~~V~~v~~~~--~~~~~v~~~~~~~~~~~~~~ 155 (446)
.. ........+..+..+..++. ++. ..+ ...|+.++... -+..+|.+...++...++.|
T Consensus 73 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~ 136 (466)
T PRK07818 73 SG--------------EVTFDYGAAFDRSRKVAEGRVKGVH--FLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTF 136 (466)
T ss_pred Cc--------------CcccCHHHHHHHHHHHHHHHHHHHH--HHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEc
Confidence 00 01112233333333332211 110 000 11233332110 02234444333333357999
Q ss_pred cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (446)
Q Consensus 156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---- 231 (446)
|+|||||| +.|+.| ||.+. .+.++.+.+... ....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.
T Consensus 137 d~lViATG--s~p~~~--pg~~~-~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~ 210 (466)
T PRK07818 137 DNAIIATG--SSTRLL--PGTSL-SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN 210 (466)
T ss_pred CEEEEeCC--CCCCCC--CCCCC-CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 99999999 788764 56432 233444332211 123578999999999999999999999999999998764
Q ss_pred -cc-----ccccCCCC-CCeeeccceeEEccCCc---EEec--CCc--EEeecEEEEecCccCCCCCC--C-------CC
Q 013303 232 -DE-----THEKQPGY-DNMWLHSMVERANEDGT---VVFR--NGR--VVSADVIMHCTGYKYNYPFL--E-------TN 288 (446)
Q Consensus 232 -~~-----~~~~~~~~-~~v~~~~~v~~i~~~~~---v~~~--dG~--~~~~D~vi~atG~~~~~~~l--~-------~~ 288 (446)
+. ..+.+.+. -++..+..|.++..++. +.+. ||+ ++++|.||+|+|++|+..++ . +.
T Consensus 211 ~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~ 290 (466)
T PRK07818 211 EDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDR 290 (466)
T ss_pred cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCC
Confidence 11 11112222 25666778888875442 4454 674 68999999999999998863 2 33
Q ss_pred CeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303 289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
|.+.+|++++ ++.|+||++|++.. ....+.+..||+.+|.++.|..
T Consensus 291 g~i~vd~~~~----------Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~ 337 (466)
T PRK07818 291 GAIAIDDYMR----------TNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAE 337 (466)
T ss_pred CcEeeCCCcc----------cCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence 4466665554 55899999998864 4456778999999999999853
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=99.97 E-value=1.8e-30 Score=268.52 Aligned_cols=296 Identities=19% Similarity=0.247 Sum_probs=194.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||+|++||..|++.|.+|+|||+. .+||+|.+. ||+|++.++.+........+.+.. .++.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~~~-~g~~ 167 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD-GGIA 167 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc--------CccccHHHHHHHHHHHHHhccccc-CCcc
Confidence 379999999999999999999999999999996 899999975 899998766544322211111100 0110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------------CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-------------~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
. . ..-...+.+.++..+...++ ++. +. ..++..++. ..+.|...++
T Consensus 168 ---~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~g~~~~~~~---~~~~v~~~~g-- 226 (561)
T PRK13748 168 ---A--T--------VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAIT--VL-HGEARFKDD---QTLIVRLNDG-- 226 (561)
T ss_pred ---C--C--------CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeE--EE-EEEEEEecC---CEEEEEeCCC--
Confidence 0 0 00123445555544333221 222 22 223443321 3455554332
Q ss_pred ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
...++.||+|||||| +.|..|++||.+.. ..+++.+... ....+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus 227 ~~~~~~~d~lviAtG--s~p~~p~i~g~~~~--~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~ 301 (561)
T PRK13748 227 GERVVAFDRCLIATG--ASPAVPPIPGLKET--PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILAR 301 (561)
T ss_pred ceEEEEcCEEEEcCC--CCCCCCCCCCCCcc--ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 234799999999999 89999999998652 1222222111 123468999999999999999999999999999998
Q ss_pred cCC----cccc-----ccCCCC-CCeeeccceeEEccCC-cEEe-cCCcEEeecEEEEecCccCCCCCC--C-------C
Q 013303 229 SVA----DETH-----EKQPGY-DNMWLHSMVERANEDG-TVVF-RNGRVVSADVIMHCTGYKYNYPFL--E-------T 287 (446)
Q Consensus 229 ~~~----~~~~-----~~~~~~-~~v~~~~~v~~i~~~~-~v~~-~dG~~~~~D~vi~atG~~~~~~~l--~-------~ 287 (446)
... +..+ +.+.+. .++..+..|+++..++ .+.+ .++.++++|.||+|+|++|+..+| . +
T Consensus 302 ~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~ 381 (561)
T PRK13748 302 STLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNA 381 (561)
T ss_pred CccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECC
Confidence 532 1111 112222 2556677888886433 2322 233469999999999999998864 2 3
Q ss_pred CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
.|.|.+|++++ ++.|+||++|++.. ....+.+..||+.++.++.|.
T Consensus 382 ~g~i~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 382 QGAIVIDQGMR----------TSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred CCCEeECCCcc----------cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 34566666555 56899999999864 344577889999999999875
No 30
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=3.8e-30 Score=258.20 Aligned_cols=286 Identities=20% Similarity=0.222 Sum_probs=193.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
.+||+||||||||++||..|++.|++|+|||+.+ .+||+|... ||.|++.+++....
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~--------gcip~k~l~~~~~~-------------- 60 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINI--------GCIPTKTLVHDAQQ-------------- 60 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeec--------cccchHHHHHHhcc--------------
Confidence 4799999999999999999999999999999976 489999865 78877654433210
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHH-----HHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~-----~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~ 155 (446)
...|.. .....+++.+++.. ..+..+++ +. ..++..++. +.+.|...++ ..++.|
T Consensus 61 -~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~-~g~~~~i~~---~~~~v~~~~g---~~~~~~ 120 (441)
T PRK08010 61 -HTDFVR----------AIQRKNEVVNFLRNKNFHNLADMPNID--VI-DGQAEFINN---HSLRVHRPEG---NLEIHG 120 (441)
T ss_pred -CCCHHH----------HHHHHHHHHHHHHHhHHHHHhhcCCcE--EE-EEEEEEecC---CEEEEEeCCC---eEEEEe
Confidence 001100 00111333344432 11112333 32 234544432 4455554332 136899
Q ss_pred cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (446)
Q Consensus 156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---- 231 (446)
|+||+||| +.|..|++||++.+.+ ++++......+ ..+++|+|||+|.+|+|+|..|++.+.+|+++.+++.
T Consensus 121 d~lviATG--s~p~~p~i~G~~~~~~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 121 EKIFINTG--AQTVVPPIPGITTTPG-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CEEEEcCC--CcCCCCCCCCccCCCC-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 99999999 8999999999875544 44444333322 3568999999999999999999999999999998764
Q ss_pred -ccc----c-ccCCCCC-CeeeccceeEEccCC-cEEec-CCcEEeecEEEEecCccCCCCCC---------CCCCeeee
Q 013303 232 -DET----H-EKQPGYD-NMWLHSMVERANEDG-TVVFR-NGRVVSADVIMHCTGYKYNYPFL---------ETNGIVTV 293 (446)
Q Consensus 232 -~~~----~-~~~~~~~-~v~~~~~v~~i~~~~-~v~~~-dG~~~~~D~vi~atG~~~~~~~l---------~~~g~i~~ 293 (446)
+.. + +.+.+.+ ++..+..|.++..++ .+.+. ++.++++|.||+|+|.+|+..++ ++.|.|.+
T Consensus 197 ~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~v 276 (441)
T PRK08010 197 EDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVV 276 (441)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEE
Confidence 111 1 1122222 455667888887543 34332 23458899999999999998764 23455666
Q ss_pred CCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
|++++ ++.|+||++|++... ...+.+..|++.++.++.|.
T Consensus 277 d~~~~----------Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 277 DKYLH----------TTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred CCCcc----------cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 66654 558999999998753 44577789999999999874
No 31
>PLN02546 glutathione reductase
Probab=99.97 E-value=1.4e-31 Score=271.99 Aligned_cols=292 Identities=20% Similarity=0.234 Sum_probs=194.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEee---------CCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRV 71 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~---------~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~ 71 (446)
.+||+||||||+|+.||..+++.|.+|+|+|+ ...+||+|.+. ||+|+|.++....+ ..+.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~--------GCiPsK~l~~aa~~~~~~~- 149 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR--------GCVPKKLLVYASKYSHEFE- 149 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc--------chHHHHHHHHHHHHHHHHH-
Confidence 37999999999999999999999999999996 25689999986 99999987765433 2111
Q ss_pred cCCCCCcccC---CCCCCcCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEE
Q 013303 72 NLPRELMGFQ---AYPFVARNYEGSVDLRRYPG-----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS 143 (446)
Q Consensus 72 ~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~-----~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~ 143 (446)
+.......+. .+.|.. ... ...+.+++....++.+++ +.. .+++.++. .+|.+
T Consensus 150 ~~~~~g~~~~~~~~~d~~~-----------~~~~k~~~~~~l~~~~~~~l~~~gV~--~i~-G~a~~vd~-----~~V~v 210 (558)
T PLN02546 150 ESRGFGWKYETEPKHDWNT-----------LIANKNAELQRLTGIYKNILKNAGVT--LIE-GRGKIVDP-----HTVDV 210 (558)
T ss_pred hhhhcCcccCCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHhCCcE--EEE-eEEEEccC-----CEEEE
Confidence 1111100000 111110 011 122334444445555554 332 24444432 34544
Q ss_pred EeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEE
Q 013303 144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV 223 (446)
Q Consensus 144 ~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V 223 (446)
++ .++.||+|||||| +.|..|++||.+. ++++...... ...+++|+|||+|.+|+|+|..|+..+.+|
T Consensus 211 -~G----~~~~~D~LVIATG--s~p~~P~IpG~~~----v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~V 278 (558)
T PLN02546 211 -DG----KLYTARNILIAVG--GRPFIPDIPGIEH----AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDV 278 (558)
T ss_pred -CC----EEEECCEEEEeCC--CCCCCCCCCChhh----ccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeE
Confidence 22 2689999999999 9999999999753 2233222211 235789999999999999999999999999
Q ss_pred EEEEecCC-----cccc-----ccCCCCC-CeeeccceeEEcc--CCcEE--ecCCcEEeecEEEEecCccCCCCCC---
Q 013303 224 HIASRSVA-----DETH-----EKQPGYD-NMWLHSMVERANE--DGTVV--FRNGRVVSADVIMHCTGYKYNYPFL--- 285 (446)
Q Consensus 224 ~l~~r~~~-----~~~~-----~~~~~~~-~v~~~~~v~~i~~--~~~v~--~~dG~~~~~D~vi~atG~~~~~~~l--- 285 (446)
+++.+.+. +..+ +.+.+.+ ++..+..+.++.. ++.+. +.+++.+.+|.||+|+|++|+..+|
T Consensus 279 tlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le 358 (558)
T PLN02546 279 HVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLE 358 (558)
T ss_pred EEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChh
Confidence 99998764 1111 1222222 4555677888853 23333 3445445589999999999998864
Q ss_pred ------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 286 ------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 286 ------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
++.|.|.+|++++ ++.|+||++|++.. ....+.+..||+.+|+++.|.
T Consensus 359 ~~gl~~d~~G~I~VD~~l~----------Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 359 EVGVKMDKNGAIEVDEYSR----------TSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred hcCCcCCCCCcEeECCCce----------eCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 2345677776655 56999999999874 345578889999999999884
No 32
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.97 E-value=3.2e-30 Score=259.76 Aligned_cols=299 Identities=19% Similarity=0.214 Sum_probs=196.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
|++|+|||||++|+.+|..+++.|.+|+|+|+. .+||+|.+. ||+|+|.++... .+..++. ... +++
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~--------gciPsK~l~~~a~~~~~~~~-~~~--~g~ 68 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLT--------DCVPSKTLIATAEVRTELRR-AAE--LGI 68 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccccc--------CCcchHHHHHHHHHHHHHHH-HHh--CCc
Confidence 579999999999999999999999999999986 599999876 899998766543 2221111 100 010
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEE--EcCCCceEEEEEeCC
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNAR--LVESNKWKVKSRKKD 147 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~--~~~~~~~~v~~~~~~ 147 (446)
. .... .........+. +.+.+.+++++++ +.. .++..++ ..+ ....|...+
T Consensus 69 ~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~~-g~~~~~~~~~~~-~~v~V~~~~-- 132 (466)
T PRK07845 69 R---FIDD-------GEARVDLPAVNARVKALAAAQSADIRARLEREGVR--VIA-GRGRLIDPGLGP-HRVKVTTAD-- 132 (466)
T ss_pred c---cccC-------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEE-EEEEEeecccCC-CEEEEEeCC--
Confidence 0 0000 00001122222 2334444555665 443 3454433 212 334444332
Q ss_pred CceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303 148 DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (446)
Q Consensus 148 ~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~ 227 (446)
+...++.||+||+||| +.|+.|++++.+. ..++++....... ..+++|+|||+|.+|+|+|..|++.+++|+++.
T Consensus 133 g~~~~~~~d~lViATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~ 207 (466)
T PRK07845 133 GGEETLDADVVLIATG--ASPRILPTAEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVS 207 (466)
T ss_pred CceEEEecCEEEEcCC--CCCCCCCCCCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 3234689999999999 8888776554432 2344544443322 246899999999999999999999999999999
Q ss_pred ecCC-----cc----cc-ccCCCCC-CeeeccceeEEccC-Cc--EEecCCcEEeecEEEEecCccCCCCCC--C-----
Q 013303 228 RSVA-----DE----TH-EKQPGYD-NMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGYKYNYPFL--E----- 286 (446)
Q Consensus 228 r~~~-----~~----~~-~~~~~~~-~v~~~~~v~~i~~~-~~--v~~~dG~~~~~D~vi~atG~~~~~~~l--~----- 286 (446)
+.+. +. .+ +.+.+.+ ++.....|.++..+ +. +.+.+|+++++|.||+|+|++|+...| .
T Consensus 208 ~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~ 287 (466)
T PRK07845 208 SRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVE 287 (466)
T ss_pred cCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCce
Confidence 8764 11 01 1122222 45566778888532 22 566789999999999999999998863 2
Q ss_pred --CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 287 --TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 --~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.|.+|++.+ ++.|+||++|++... ...+.+..||+.++.++.|.
T Consensus 288 ~~~~G~i~Vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 288 LTPSGHITVDRVSR----------TSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred ECCCCcEeECCCcc----------cCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 334555665544 568999999988643 44678899999999999875
No 33
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=5e-30 Score=258.36 Aligned_cols=297 Identities=18% Similarity=0.186 Sum_probs=187.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~~ 80 (446)
.+||+||||||||++||..+++.|.+|+|+|+.+.+||+|.+. ||+|++.++.... |+.++... ...++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~--------gciPsK~l~~~~~~~~~~~~~~-~~~~gi 73 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV--------GCMPSKALLHASELYEAASGGE-FAHLGI 73 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC--------cccccHHHHHHhHHHHHHhhhh-hhhcCc
Confidence 3699999999999999999999999999999877899999886 9999998766543 32221100 000111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.. . .-....++.++. ....+..++. +..+. . .+. +..++.+...+++
T Consensus 74 ~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-a-~~~----~~~~v~v~~~~g~ 131 (466)
T PRK06115 74 EV-K-------------PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVD--WIKGW-G-RLD----GVGKVVVKAEDGS 131 (466)
T ss_pred cc-c-------------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-E-EEc----cCCEEEEEcCCCc
Confidence 00 0 001112222222 2222223333 22221 1 221 2233333322233
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
..++.||+|||||| +.|. .+||.+.....++++...... ...+++|+|||+|.+|+|+|..+++.|.+|+++.+.
T Consensus 132 ~~~~~~d~lVIATG--s~p~--~ipg~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~ 206 (466)
T PRK06115 132 ETQLEAKDIVIATG--SEPT--PLPGVTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL 206 (466)
T ss_pred eEEEEeCEEEEeCC--CCCC--CCCCCCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 34799999999999 7774 366654211223444333222 124799999999999999999999999999999987
Q ss_pred CC-----cc-----ccccCCCC-CCeeeccceeEEccCC-c--EEec---CC--cEEeecEEEEecCccCCCCCCC--CC
Q 013303 230 VA-----DE-----THEKQPGY-DNMWLHSMVERANEDG-T--VVFR---NG--RVVSADVIMHCTGYKYNYPFLE--TN 288 (446)
Q Consensus 230 ~~-----~~-----~~~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~---dG--~~~~~D~vi~atG~~~~~~~l~--~~ 288 (446)
+. +. ..+.+.+. -++..+..|.++..++ . +.+. +| +++++|.||+|+|++|+...|. ..
T Consensus 207 ~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~ 286 (466)
T PRK06115 207 DRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETV 286 (466)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccc
Confidence 64 10 01112222 2566677888887532 2 3333 23 4689999999999999988653 21
Q ss_pred C------eeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303 289 G------IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 289 g------~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~ 344 (446)
| .+.+|++++ ++.|+||++|++... ...+.+..||+.+++++.|..
T Consensus 287 g~~~~~~G~~vd~~~~----------Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~ 339 (466)
T PRK06115 287 GLETDKRGMLANDHHR----------TSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA 339 (466)
T ss_pred cceeCCCCEEECCCee----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 1 133343333 558999999998743 345778899999999998863
No 34
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=8.1e-31 Score=264.28 Aligned_cols=295 Identities=17% Similarity=0.221 Sum_probs=191.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-----C---CcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceeec
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-----E---QVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVN 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-----~---~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~ 72 (446)
.+||+||||||+|+.+|..+++.|.+|+|+|+. . .+||+|.+. ||+|+|.++++... ..++ +
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~--------GCiPsK~l~~~a~~~~~~~-~ 72 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNV--------GCIPKKLMHQAALLGQALK-D 72 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccccc--------CcCchhHHHHHHHHHHHHh-h
Confidence 479999999999999999999999999999973 1 589999886 99999987765432 2111 1
Q ss_pred CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCCcEEeCeEEEEEEEcCCCceEE
Q 013303 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-----------FGVDQVVRLHTEVLNARLVESNKWKV 141 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~v 141 (446)
.. .+++. +.. ..-.....+.++..+.+++ .+++ +. ..+..-+ +..+|
T Consensus 73 ~~--~~g~~---~~~---------~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i-~G~a~f~-----~~~~v 130 (484)
T TIGR01438 73 SR--NYGWN---VEE---------TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YE-NAYAEFV-----DKHRI 130 (484)
T ss_pred hh--hcCcc---cCC---------CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EE-EEEEEEc-----CCCEE
Confidence 11 11110 000 0011233334433333332 2332 11 1122212 22345
Q ss_pred EEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC
Q 013303 142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221 (446)
Q Consensus 142 ~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~ 221 (446)
.+...++...++.||+|||||| +.|+.|++||.+.. .+++.+..... ..+++++|||+|.+|+|+|..|++.|.
T Consensus 131 ~v~~~~g~~~~~~~d~lVIATG--s~p~~p~ipG~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~ 204 (484)
T TIGR01438 131 KATNKKGKEKIYSAERFLIATG--ERPRYPGIPGAKEL---CITSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGL 204 (484)
T ss_pred EEeccCCCceEEEeCEEEEecC--CCCCCCCCCCccce---eecHHHhhccc-ccCCCEEEECCCHHHHHHHHHHHHhCC
Confidence 5543333335799999999999 89999999997542 23333332221 245789999999999999999999999
Q ss_pred EEEEEEecCC----ccc-----cccCCCCC-CeeeccceeEEccC-Cc--EEecCCc---EEeecEEEEecCccCCCCCC
Q 013303 222 EVHIASRSVA----DET-----HEKQPGYD-NMWLHSMVERANED-GT--VVFRNGR---VVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 222 ~V~l~~r~~~----~~~-----~~~~~~~~-~v~~~~~v~~i~~~-~~--v~~~dG~---~~~~D~vi~atG~~~~~~~l 285 (446)
+|+++.+... +.. .+.+.+.+ ++..+..+.++... +. +.+.+|+ ++++|.||+|+|++|+..+|
T Consensus 205 ~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l 284 (484)
T TIGR01438 205 DVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKL 284 (484)
T ss_pred cEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcC
Confidence 9999997532 111 11222222 45555666666532 22 5666763 68999999999999999875
Q ss_pred C--C--------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCC
Q 013303 286 E--T--------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 286 ~--~--------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~ 343 (446)
. . .|.|.+|+.++ ++.|+||++|++.. ....+.+..||+.+++++.+.
T Consensus 285 ~l~~~gv~~~~~~G~I~Vd~~~~----------Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 285 NLENVGVKINKKTGKIPADEEEQ----------TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred CcccccceecCcCCeEecCCCcc----------cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence 3 2 24455555443 55899999999763 334577889999999999863
No 35
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=3.9e-30 Score=257.91 Aligned_cols=286 Identities=19% Similarity=0.202 Sum_probs=190.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC-cCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~-~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
.+||+||||||||++||..|++.|.+|+|||+.+. +||+|... ||.|++.++.....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~--------gciP~k~~~~~~~~-------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINI--------GCIPTKTLLVAAEK-------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecC--------ccccchHhhhhhhc--------------
Confidence 47999999999999999999999999999999864 69998764 78887665543321
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHH----HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEE----VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~----v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d 156 (446)
...|... .-..+. +.+...+...+.+++ +..+ ++..+ +..+|.+..+. ...++.||
T Consensus 61 -~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~~~~~-----~~~~v~v~~~~-~~~~~~~d 120 (438)
T PRK07251 61 -NLSFEQV----------MATKNTVTSRLRGKNYAMLAGSGVD--LYDA-EAHFV-----SNKVIEVQAGD-EKIELTAE 120 (438)
T ss_pred -CCCHHHH----------HHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEc-----cCCEEEEeeCC-CcEEEEcC
Confidence 0011000 000011 112222333444544 3332 22222 23455554422 22468999
Q ss_pred EEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----
Q 013303 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----- 231 (446)
Q Consensus 157 ~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----- 231 (446)
+|||||| +.|+.|++||.+... .++++....... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.+.
T Consensus 121 ~vViATG--s~~~~p~i~G~~~~~-~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~ 196 (438)
T PRK07251 121 TIVINTG--AVSNVLPIPGLADSK-HVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE 196 (438)
T ss_pred EEEEeCC--CCCCCCCCCCcCCCC-cEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC
Confidence 9999999 889999999975432 244443333222 2468999999999999999999999999999998763
Q ss_pred cccc-----ccCCCC-CCeeeccceeEEccCC-cE-EecCCcEEeecEEEEecCccCCCCCCC---------CCCeeeeC
Q 013303 232 DETH-----EKQPGY-DNMWLHSMVERANEDG-TV-VFRNGRVVSADVIMHCTGYKYNYPFLE---------TNGIVTVD 294 (446)
Q Consensus 232 ~~~~-----~~~~~~-~~v~~~~~v~~i~~~~-~v-~~~dG~~~~~D~vi~atG~~~~~~~l~---------~~g~i~~~ 294 (446)
+..+ +.+.+. -++.....|.++..++ .+ ...+|+++++|.||+|+|+.|+.+.+. +.|.+.+|
T Consensus 197 ~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd 276 (438)
T PRK07251 197 EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD 276 (438)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC
Confidence 1111 111122 2455566788886543 23 345678899999999999999987643 23445555
Q ss_pred CCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 295 DNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 295 ~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
+..+ ++.|+||++|++... ...+.+..|++.++.++.|.
T Consensus 277 ~~~~----------t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 277 DYCQ----------TSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred CCcc----------cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 5544 458999999988643 34567788999999988865
No 36
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.97 E-value=7.4e-31 Score=265.76 Aligned_cols=304 Identities=17% Similarity=0.226 Sum_probs=197.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceeec
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVN 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~ 72 (446)
++||+||||||||++||..|++.|.+|+|+|+.. .+||+|.+. ||.|++.++..... ..++..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~--------gciPsK~l~~~a~~~~~~~~~ 76 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNV--------GCVPKKLMHYAANIGSIFHHD 76 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccc--------cccchHHHHHHHHHHHHHHhH
Confidence 4799999999999999999999999999999631 489999875 89988754433211 111110
Q ss_pred CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE------cCCCceEEEEEeC
Q 013303 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL------VESNKWKVKSRKK 146 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~------~~~~~~~v~~~~~ 146 (446)
. ..+++. . ..-.+..++.+++...++.++.. +....++..|+. .. +.++|.+.+.
T Consensus 77 ~--~~~g~~-----~---------~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~-~~~~v~v~~~ 137 (499)
T PTZ00052 77 S--QMYGWK-----T---------SSSFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLK-DEHTVSYGDN 137 (499)
T ss_pred H--hcCCCC-----C---------CCCcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEc-cCCEEEEeeC
Confidence 0 011111 0 00234578888888877766433 222222222111 11 3466666542
Q ss_pred CCceEEEEEcEEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEE
Q 013303 147 DDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225 (446)
Q Consensus 147 ~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l 225 (446)
+....+.||+|||||| +.|+.|. +||.+.+ .+.+.+..... ..+++|+|||+|.+|+|+|..|++.|.+|++
T Consensus 138 -~~~~~i~~d~lIIATG--s~p~~p~~i~G~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 210 (499)
T PTZ00052 138 -SQEETITAKYILIATG--GRPSIPEDVPGAKEY---SITSDDIFSLS-KDPGKTLIVGASYIGLETAGFLNELGFDVTV 210 (499)
T ss_pred -CCceEEECCEEEEecC--CCCCCCCCCCCccce---eecHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 2234799999999999 8999884 8987542 22332222211 1357999999999999999999999999999
Q ss_pred EEecCC----cc----c-cccCCCCC-CeeeccceeEEccC-C--cEEecCCcEEeecEEEEecCccCCCCCCC--CCCe
Q 013303 226 ASRSVA----DE----T-HEKQPGYD-NMWLHSMVERANED-G--TVVFRNGRVVSADVIMHCTGYKYNYPFLE--TNGI 290 (446)
Q Consensus 226 ~~r~~~----~~----~-~~~~~~~~-~v~~~~~v~~i~~~-~--~v~~~dG~~~~~D~vi~atG~~~~~~~l~--~~g~ 290 (446)
+.++.. +. . .+.+.+.+ ++..+..+.++... + .+.+.+|+++++|.||+|+|++|+..+|. ..|
T Consensus 211 i~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g- 289 (499)
T PTZ00052 211 AVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIG- 289 (499)
T ss_pred EEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcC-
Confidence 987432 10 1 11122222 45555666666532 2 26678899999999999999999999874 222
Q ss_pred eeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCC
Q 013303 291 VTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 291 i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.++++......+. . ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus 290 ~~~~~~G~ii~~~~--~-Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 290 VHVNKSNKIIAPND--C-TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred cEECCCCCEeeCCC--c-CCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 44444332111111 2 55899999999753 335577889999999999874
No 37
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=5e-30 Score=259.33 Aligned_cols=302 Identities=18% Similarity=0.203 Sum_probs=194.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
.+||+||||||||++||..|++.|++|+|+|+. .+||+|... ||+|++.+++.. .+..++. .+...+..
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~-~~~~g~~~ 73 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK--------GCIPSKALLHSAEVFQTAKK-ASPFGISV 73 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC--------CcCchHHHHHHHHHHHHHHH-HHhcCccC
Confidence 579999999999999999999999999999995 799999975 899998766543 2332221 11100000
Q ss_pred CC--CCCCcCCCCCCCCCCCCCCHHHHHHHHH----HHHHHhCCCCcEEeCeEEEEEEEc----CCCceEEEEEeCCCce
Q 013303 81 QA--YPFVARNYEGSVDLRRYPGHEEVLRYLQ----NFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDVV 150 (446)
Q Consensus 81 ~d--~~~~~~~~~~~~~~~~~~~~~~v~~yl~----~~~~~~~l~~~i~~~~~V~~v~~~----~~~~~~v~~~~~~~~~ 150 (446)
.. ..|.. ..-..+++.+++. ...++.+++ +.. .++..++.. .++.++|...++ ..
T Consensus 74 ~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~-g~a~~i~~~~~~~~~~~~~v~~~~g--~~ 138 (472)
T PRK05976 74 SGPALDFAK----------VQERKDGIVDRLTKGVAALLKKGKID--VFH-GIGRILGPSIFSPMPGTVSVETETG--EN 138 (472)
T ss_pred CCCccCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEeCCCCCcCCceEEEEEeCCC--ce
Confidence 00 00000 0001122333332 333444655 443 456666543 002455554333 23
Q ss_pred EEEEEcEEEEccCCCCCCccCCCCCCCCCCcc-EEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~-~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.++.||+|||||| +.|+.| ||.. +.+. ++++.+..... ..+++|+|||+|++|+|+|..|++.+.+|+++.+.
T Consensus 139 ~~~~~d~lViATG--s~p~~~--p~~~-~~~~~~~~~~~~~~~~-~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~ 212 (472)
T PRK05976 139 EMIIPENLLIATG--SRPVEL--PGLP-FDGEYVISSDEALSLE-TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAA 212 (472)
T ss_pred EEEEcCEEEEeCC--CCCCCC--CCCC-CCCceEEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 4799999999999 777654 3332 1222 44443333222 23689999999999999999999999999999987
Q ss_pred CC-----c----ccc-ccCCCCC-CeeeccceeEEcc--CCcE---EecCCc--EEeecEEEEecCccCCCCCCC-----
Q 013303 230 VA-----D----ETH-EKQPGYD-NMWLHSMVERANE--DGTV---VFRNGR--VVSADVIMHCTGYKYNYPFLE----- 286 (446)
Q Consensus 230 ~~-----~----~~~-~~~~~~~-~v~~~~~v~~i~~--~~~v---~~~dG~--~~~~D~vi~atG~~~~~~~l~----- 286 (446)
+. + ..+ +.+.+.+ ++.....|.++.. ++.+ .+.+|+ ++++|.||+|+|.+|+.+.+.
T Consensus 213 ~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~ 292 (472)
T PRK05976 213 DRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTD 292 (472)
T ss_pred CccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcC
Confidence 64 1 111 1222222 5666777888863 3332 345774 588999999999999988653
Q ss_pred ---CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303 287 ---TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 287 ---~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~ 344 (446)
+.|.+.+|+..+ ++.|+||++|++... .....+..||+.++.++.|..
T Consensus 293 ~~~~~g~i~Vd~~l~----------ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (472)
T PRK05976 293 IDVEGGFIQIDDFCQ----------TKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344 (472)
T ss_pred ceecCCEEEECCCcc----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 234566665554 448999999988643 346778899999999998863
No 38
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=1.1e-29 Score=256.61 Aligned_cols=299 Identities=18% Similarity=0.223 Sum_probs=193.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEee------CCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLP 74 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~------~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~ 74 (446)
.+||+||||||||++||..+++.|.+|+|+|+ ...+||+|.+. ||.|++.+++... +..+.....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~--------gc~P~k~l~~~a~~~~~~~~~~~ 75 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV--------GCIPSKALLASSEEFENAGHHFA 75 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc--------cccHHHHHHHHHHHHHHHHhhHH
Confidence 47999999999999999999999999999998 36789999765 7888765544321 111111000
Q ss_pred CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEE
Q 013303 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS 143 (446)
Q Consensus 75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~ 143 (446)
.....+...+ ....++.+ .+....+..+++ +. ..++..+++.. +.++|.+
T Consensus 76 ~~G~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~g~~~~~~~~~-~~~~v~v 136 (475)
T PRK06327 76 DHGIHVDGVK---------------IDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--VL-KGRGSFVGKTD-AGYEIKV 136 (475)
T ss_pred hcCccCCCCc---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EE-EEEEEEecCCC-CCCEEEE
Confidence 0000000000 11122222 233334444554 33 34555665444 5688887
Q ss_pred EeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEE
Q 013303 144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV 223 (446)
Q Consensus 144 ~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V 223 (446)
....+ .++.||+|||||| +.|+.|+ +.. +.+..++..+........+++|+|||+|.+|+|+|..+++.+.+|
T Consensus 137 ~~~~~--~~~~~d~lViATG--s~p~~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~V 209 (475)
T PRK06327 137 TGEDE--TVITAKHVIIATG--SEPRHLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEV 209 (475)
T ss_pred ecCCC--eEEEeCEEEEeCC--CCCCCCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 64322 3799999999999 7776543 222 223333333221111235799999999999999999999999999
Q ss_pred EEEEecCC-----ccc-----cccCCCCC-CeeeccceeEEccCCc---EEecCC----cEEeecEEEEecCccCCCCCC
Q 013303 224 HIASRSVA-----DET-----HEKQPGYD-NMWLHSMVERANEDGT---VVFRNG----RVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 224 ~l~~r~~~-----~~~-----~~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG----~~~~~D~vi~atG~~~~~~~l 285 (446)
+++.+.+. +.. .+.+.+.+ ++..+..|.++..++. +.+.++ +++++|.||+|+|++|+.++|
T Consensus 210 tli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 210 TILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGL 289 (475)
T ss_pred EEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCC
Confidence 99998764 111 12222222 5666778888875432 455553 468899999999999998854
Q ss_pred C---------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303 286 E---------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 286 ~---------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
. +.|.+.+|+..+ ++.|+||++|++.. ....+.+..|++.+|.++.|..
T Consensus 290 ~~~~~g~~~~~~G~i~vd~~~~----------Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 290 GLEAVGLKLDERGFIPVDDHCR----------TNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred CcHhhCceeCCCCeEeECCCCc----------cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 2 334566665544 45899999998864 3445778899999999999853
No 39
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=9.6e-30 Score=255.15 Aligned_cols=288 Identities=17% Similarity=0.209 Sum_probs=189.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~ 80 (446)
.+||+||||||+|..||.. ..|.+|+|+|+ +.+||+|.+. ||+|+|.++.+... +.++ +... +++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~--------GCiPsK~l~~~a~~~~~~~-~~~~--~g~ 67 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV--------GCIPTKMFVYAAEVAQSIG-ESAR--LGI 67 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc--------CccchHHHHHHHHHHHHHH-Hhhc--cCe
Confidence 5899999999999998654 47999999998 5799999986 99999987755432 2221 1111 111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHH-HHHH--------------hCCCCcEEeCeEEEEEEEcCCCceEEEEEe
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-FARE--------------FGVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~-~~~~--------------~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~ 145 (446)
.. ...-+...++.++... ..+. .+++ +..++.+.. +.++|.+.+
T Consensus 68 ~~-------------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~------~~~~V~~~~ 126 (452)
T TIGR03452 68 DA-------------EIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFV------GPRTLRTGD 126 (452)
T ss_pred eC-------------CCCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEe------cCCEEEECC
Confidence 00 0001223444444433 2221 1222 222222111 457777754
Q ss_pred CCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEE
Q 013303 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225 (446)
Q Consensus 146 ~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l 225 (446)
+. +++||+|||||| +.|..|++.+... -....+.+..... ..+++|+|||+|++|+|+|..|++.|.+|++
T Consensus 127 g~----~~~~d~lIiATG--s~p~~p~~~~~~~--~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl 197 (452)
T TIGR03452 127 GE----EITGDQIVIAAG--SRPYIPPAIADSG--VRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGTRVTI 197 (452)
T ss_pred Cc----EEEeCEEEEEEC--CCCCCCCCCCCCC--CEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 32 689999999999 8898887544221 1122222221111 1368999999999999999999999999999
Q ss_pred EEecCC-----cc----ccccCCC-CCCeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCCCC------
Q 013303 226 ASRSVA-----DE----THEKQPG-YDNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPFLE------ 286 (446)
Q Consensus 226 ~~r~~~-----~~----~~~~~~~-~~~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~l~------ 286 (446)
+.+.+. +. .+.++.+ .-++.....|.++..++ . +.+.+|+++++|.||+|+|++|+..+|.
T Consensus 198 i~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl 277 (452)
T TIGR03452 198 VNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGV 277 (452)
T ss_pred EEccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCe
Confidence 998764 11 1111112 22455667788886432 2 5567888899999999999999998853
Q ss_pred ---CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303 287 ---TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 287 ---~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~ 343 (446)
+.|.+.+|++++ ++.|+||++|++... ...+.+..||+.+|+++.|.
T Consensus 278 ~~~~~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 278 EVDEDGRIKVDEYGR----------TSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred eECCCCcEeeCCCcc----------cCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 234455555544 568999999998754 44577899999999999875
No 40
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.97 E-value=2.3e-29 Score=251.72 Aligned_cols=272 Identities=17% Similarity=0.233 Sum_probs=185.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
|++|+|||||+||+.||..|++. +.+|+|+|+++.++ +.+. .
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~------------------~-------------- 44 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANC------------------A-------------- 44 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccC------------------C--------------
Confidence 46899999999999999999886 57999999987543 1100 0
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHH-HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRY-LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDA 157 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~y-l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~ 157 (446)
.|+.. ........+...+ ...+.++.++. ++++++|++|++.. .+|.+.++. ++..++.||+
T Consensus 45 ---lp~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~~---~~v~~~~~~~~~~~~~~yd~ 108 (438)
T PRK13512 45 ---LPYYI--------GEVVEDRKYALAYTPEKFYDRKQIT--VKTYHEVIAINDER---QTVTVLNRKTNEQFEESYDK 108 (438)
T ss_pred ---cchhh--------cCccCCHHHcccCCHHHHHHhCCCE--EEeCCEEEEEECCC---CEEEEEECCCCcEEeeecCE
Confidence 00000 0000111222222 23445666777 88899999998765 456665543 2344678999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
|||||| +.|+.|++++.. ++......+. ....+++|+|||+|.+|+|+|..|++.+.+|+++++++
T Consensus 109 lviAtG--s~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 109 LILSPG--ASANSLGFESDI-----TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred EEECCC--CCCCCCCCCCCC-----eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 999999 888887765321 2222211111 12246899999999999999999999999999999876
Q ss_pred C-----cc----c-cccCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCC-------CCeee
Q 013303 231 A-----DE----T-HEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLET-------NGIVT 292 (446)
Q Consensus 231 ~-----~~----~-~~~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~-------~g~i~ 292 (446)
. +. . .+.+.+.+ ++..+..|+++++. .+++++|+++++|.|++|+|++|+.+++.. .|.+.
T Consensus 182 ~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~ 260 (438)
T PRK13512 182 KINKLMDADMNQPILDELDKREIPYRLNEEIDAINGN-EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIP 260 (438)
T ss_pred ccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC-EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEE
Confidence 4 11 1 11222222 45667788998653 588899999999999999999999887643 34455
Q ss_pred eCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCC
Q 013303 293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~ 343 (446)
+|++++ ++.|+||++|++... ...+.+..||+.+++++.|.
T Consensus 261 Vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 261 VNDKFE----------TNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred ECCCcc----------cCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 555443 458999999988531 22344678999999999985
No 41
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=2.7e-29 Score=253.81 Aligned_cols=293 Identities=18% Similarity=0.220 Sum_probs=190.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~ 80 (446)
++||+||||||||++||..|++.|.+|+|+|+ +.+||+|... ||.|++.++... .+..+. ....
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~--------gc~Psk~l~~~~~~~~~~~-~~~~----- 65 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV--------GCIPTKALLHSAEVYDEIK-HAKD----- 65 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec--------CccchHHHHHHhhHHHHHH-HHHh-----
Confidence 47999999999999999999999999999999 8899999875 888887655433 222222 1110
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~-----------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
+.+.. .....+...+.++.. ...++.+++ +..+ ++..++ . ..+.+...++
T Consensus 66 --~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~--~-~~~~v~~~~g--- 126 (461)
T TIGR01350 66 --YGIEV--------ENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVT--VIKG-EAKFLD--P-GTVLVTGENG--- 126 (461)
T ss_pred --cCCCC--------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc--C-CEEEEecCCC---
Confidence 10000 000112233333332 233334544 3332 333332 1 3344443322
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCC-CCCCCCccEEEe-eecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHS-HNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~-G~~~~~g~~~hs-~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~ 227 (446)
..++.||+||+||| +.|+.|++| +.+ +..+++ .+.... ...+++|+|||+|.+|+|+|..|++.+.+|+++.
T Consensus 127 ~~~~~~d~lVlAtG--~~p~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~ 200 (461)
T TIGR01350 127 EETLTAKNIIIATG--SRPRSLPGPFDFD---GEVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFASLGSKVTVIE 200 (461)
T ss_pred cEEEEeCEEEEcCC--CCCCCCCCCCCCC---CceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 14789999999999 889888876 322 222332 222211 2246899999999999999999999999999999
Q ss_pred ecCCc-----cc-----cccCCCC-CCeeeccceeEEccC-Cc--EEecCC--cEEeecEEEEecCccCCCC--CCC---
Q 013303 228 RSVAD-----ET-----HEKQPGY-DNMWLHSMVERANED-GT--VVFRNG--RVVSADVIMHCTGYKYNYP--FLE--- 286 (446)
Q Consensus 228 r~~~~-----~~-----~~~~~~~-~~v~~~~~v~~i~~~-~~--v~~~dG--~~~~~D~vi~atG~~~~~~--~l~--- 286 (446)
+.+.. .. .+.+.+. .++.....|.++..+ +. +.+.+| +++++|.||+|+|+.|+.+ ++.
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~g 280 (461)
T TIGR01350 201 MLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLG 280 (461)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhC
Confidence 87640 00 1112222 256667788888643 23 344567 4789999999999999988 333
Q ss_pred ----CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303 287 ----TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 287 ----~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~ 344 (446)
..|.+.+|+..+ ++.|+||++|++.. ....+.+..||+.+|.++.++.
T Consensus 281 l~~~~~g~i~vd~~l~----------t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 281 VELDERGRIVVDEYMR----------TNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred ceECCCCcEeeCCCcc----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 334566665544 45899999998864 3345778899999999998753
No 42
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.97 E-value=4.7e-29 Score=245.35 Aligned_cols=270 Identities=18% Similarity=0.256 Sum_probs=187.8
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
|+++|+|||||+||+.+|+.|++.+ .+|+|+++++.. .|.. +. + +.
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~y~~------------------~~---l----~~--- 48 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYNK------------------PD---L----SH--- 48 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----CcCc------------------Cc---C----cH---
Confidence 6789999999999999999998864 689999987522 1100 00 0 00
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHH-HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLR-YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~-yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~ 157 (446)
.+ ......+++.. ...+++++++++ ++++++|+++++.. ++|++. + .++.||+
T Consensus 49 ~~----------------~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~-~----~~~~yd~ 102 (377)
T PRK04965 49 VF----------------SQGQRADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAEA---QVVKSQ-G----NQWQYDK 102 (377)
T ss_pred HH----------------hCCCCHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECCC---CEEEEC-C----eEEeCCE
Confidence 00 00111234443 255677788887 88899999998754 566642 2 2689999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-
Q 013303 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (446)
Q Consensus 158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~- 231 (446)
||+||| +.|..|++||.+. +++.....+. ....+++|+|||+|.+|+|+|..|++.+.+|+++++.+.
T Consensus 103 LVlATG--~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 103 LVLATG--ASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred EEECCC--CCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 999999 8899999999753 2332221111 112578999999999999999999999999999998764
Q ss_pred -----ccc-----cccCCCCC-CeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCCCCCC-----eee
Q 013303 232 -----DET-----HEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFLETNG-----IVT 292 (446)
Q Consensus 232 -----~~~-----~~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g-----~i~ 292 (446)
+.. .+.+.+.+ ++.....|.++..++. +.+.||+++++|.||+|+|..|+..++...| .+.
T Consensus 177 l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~gi~ 256 (377)
T PRK04965 177 LASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRGIV 256 (377)
T ss_pred cchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCCEE
Confidence 110 11122222 4555678888875432 7788999999999999999999987753322 255
Q ss_pred eCCCCcccccccccCCCCCCCeEEecCCCccC-----chhHHHHHHHHHHHHHcCCC
Q 013303 293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----PFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----~~~~~~~qa~~~a~~l~g~~ 344 (446)
+|++++ ++.|+||++|++.... ....+..||+++|++|.|..
T Consensus 257 vd~~l~----------ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 257 VDSYLQ----------TSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred ECCCcc----------cCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 665544 4589999999886321 23446789999999999863
No 43
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=2.4e-29 Score=258.70 Aligned_cols=322 Identities=16% Similarity=0.197 Sum_probs=200.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~ 79 (446)
.+||+||||||+|++||..+++.|.+|+|||+. ..+||+|.+. ||+|+|.++..+ .++.++.......++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~--------GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV--------GCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe--------CCcchHHHHHHHHHHHHHHhccccccCC
Confidence 469999999999999999999999999999974 4699999986 999999877654 333332111001122
Q ss_pred cC--CCCCCcCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhC--CCC-----cEEeCeEEEEEEEcCC---CceEEEEE
Q 013303 80 FQ--AYPFVARNYEGSVD---LRRYPGHEEVLRYLQNFAREFG--VDQ-----VVRLHTEVLNARLVES---NKWKVKSR 144 (446)
Q Consensus 80 ~~--d~~~~~~~~~~~~~---~~~~~~~~~v~~yl~~~~~~~~--l~~-----~i~~~~~V~~v~~~~~---~~~~v~~~ 144 (446)
.. .||-.......... ...-+....+.++.+...+++. +.. .+..++++..+..... +..+|.+.
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 21 11110000000000 0112355666666666655531 110 0111122222322110 22344443
Q ss_pred eCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEE
Q 013303 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH 224 (446)
Q Consensus 145 ~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~ 224 (446)
.. + .++.||+|||||| +.|.+|++++.+. ..++++.+....+ ..+++|+|||+|.+|+|+|..++..|++|+
T Consensus 268 ~~-g--~~i~ad~lIIATG--S~P~~P~~~~~~~--~~V~ts~d~~~l~-~lpk~VvIVGgG~iGvE~A~~l~~~G~eVT 339 (659)
T PTZ00153 268 KS-G--KEFKVKNIIIATG--STPNIPDNIEVDQ--KSVFTSDTAVKLE-GLQNYMGIVGMGIIGLEFMDIYTALGSEVV 339 (659)
T ss_pred cC-C--EEEECCEEEEcCC--CCCCCCCCCCCCC--CcEEehHHhhhhh-hcCCceEEECCCHHHHHHHHHHHhCCCeEE
Confidence 21 1 3689999999999 8999888766543 2344443332222 247899999999999999999999999999
Q ss_pred EEEecCC-----cc----cccc-CCC-C-CCeeeccceeEEccCCc---EE--ecC-------C--------cEEeecEE
Q 013303 225 IASRSVA-----DE----THEK-QPG-Y-DNMWLHSMVERANEDGT---VV--FRN-------G--------RVVSADVI 272 (446)
Q Consensus 225 l~~r~~~-----~~----~~~~-~~~-~-~~v~~~~~v~~i~~~~~---v~--~~d-------G--------~~~~~D~v 272 (446)
++.+.+. +. .+.+ +.+ . -++..+..|.++..++. +. +.+ + +++++|.|
T Consensus 340 LIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~V 419 (659)
T PTZ00153 340 SFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSC 419 (659)
T ss_pred EEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEE
Confidence 9998764 11 1111 222 2 25666778888865431 33 321 1 26899999
Q ss_pred EEecCccCCCCCCC--------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 273 MHCTGYKYNYPFLE--------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 273 i~atG~~~~~~~l~--------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
|+|||++|+..+|. +.|.|.+|++++... . .++..|+||++|++.. ....+.+..||+.++++|.|.
T Consensus 420 lvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~-~---~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 420 LVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLR-E---DQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred EEEECcccCCccCCchhcCCcccCCEEeECCCCCcCC-C---CCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 99999999998752 235677777765200 0 0012589999999874 334578899999999999886
No 44
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=6.4e-29 Score=250.16 Aligned_cols=293 Identities=16% Similarity=0.202 Sum_probs=189.2
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCcccCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGFQA 82 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~~~d 82 (446)
+|+||||||||++||..|++.|.+|+|+|+. .+||+|.+. ||+|+|.+++... +...+. ... ++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~--------gciPsk~l~~~a~~~~~~~~-~~~--~g~-- 67 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNE--------GCMPTKSLLESAEVHDKVKK-ANH--FGI-- 67 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCC--------ccccchHHHHHHHHHHHHHH-HHh--cCc--
Confidence 8999999999999999999999999999986 589999876 9999987765432 222211 000 111
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-----------FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~ 151 (446)
+... .....+...+.++..+..++ .+++ + +..++..++ + ....|...++ ..
T Consensus 68 -~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~g~a~~~~--~-~~v~v~~~~~---~~ 129 (458)
T PRK06912 68 -TLPN--------GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIK--V-IQGKASFET--D-HRVRVEYGDK---EE 129 (458)
T ss_pred -cccC--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--E-EEEEEEEcc--C-CEEEEeeCCC---cE
Confidence 0000 00012334444444333332 2332 2 122333332 1 3344443221 24
Q ss_pred EEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 152 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
++.||+|||||| +.|+.|+++|.+. ..++++.+..... ..+++|+|||+|++|+|+|..+++.+.+|+++.+.+.
T Consensus 130 ~~~~d~lviATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 130 VVDAEQFIIAAG--SEPTELPFAPFDG--KWIINSKHAMSLP-SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred EEECCEEEEeCC--CCCCCCCCCCCCC--CeEEcchHHhCcc-ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 689999999999 8888887777543 1244443322222 2368999999999999999999999999999998764
Q ss_pred -----ccc-----cccCCCC-CCeeeccceeEEccCCc-EEec-CCc--EEeecEEEEecCccCCCCCCC--CCC-----
Q 013303 232 -----DET-----HEKQPGY-DNMWLHSMVERANEDGT-VVFR-NGR--VVSADVIMHCTGYKYNYPFLE--TNG----- 289 (446)
Q Consensus 232 -----~~~-----~~~~~~~-~~v~~~~~v~~i~~~~~-v~~~-dG~--~~~~D~vi~atG~~~~~~~l~--~~g----- 289 (446)
+.. .+.+.+. -++..+..|.+++.++. +.+. +|+ ++++|.||+|||++|+.+++. ..|
T Consensus 205 ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~ 284 (458)
T PRK06912 205 LLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSN 284 (458)
T ss_pred cCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecC
Confidence 111 1112222 25666778888865433 4443 443 588999999999999988652 212
Q ss_pred -eeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 290 -IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 290 -~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
.+.+|++.+ ++.|+||++|++.. ....+.+..|++.+|.++.|.
T Consensus 285 ~gi~Vd~~~~----------ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 285 KGISVNEHMQ----------TNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred CCEEeCCCee----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 145554443 45899999999874 344577889999999999885
No 45
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=5.8e-29 Score=250.31 Aligned_cols=276 Identities=19% Similarity=0.244 Sum_probs=188.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
++|+|||||+||+++|..|++.+ .+|+|||+++..+ |... +
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------~--------------------------- 43 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------G--------------------------- 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------C---------------------------
Confidence 47999999999999999999875 5899999987552 1100 0
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV 159 (446)
.|+.. ...+....++..+..+..++.+++ ++++++|++|++.. ..|++.+. .+....+.||+||
T Consensus 44 --~~~~~--------~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~~~~~~~~~~~~yd~lv 108 (444)
T PRK09564 44 --LPYFV--------GGFFDDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKN---KTITVKNLKTGSIFNDTYDKLM 108 (444)
T ss_pred --CceEe--------ccccCCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCC---CEEEEEECCCCCEEEecCCEEE
Confidence 00000 001112234444445556667887 88899999998754 45555542 1222334499999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-------CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~- 231 (446)
+||| +.|+.|.+||.+. ..+.+...+.+.. ...+++|+|||+|.+|+|+|..+.+.+++|+++.+.+.
T Consensus 109 iAtG--~~~~~~~i~g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 109 IATG--ARPIIPPIKNINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred ECCC--CCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 9999 8899999999753 1244443322111 23578999999999999999999999999999987653
Q ss_pred -----cccc-----ccCCCC-CCeeeccceeEEccCCc--EEecCCcEEeecEEEEecCccCCCCCCCC-------CCee
Q 013303 232 -----DETH-----EKQPGY-DNMWLHSMVERANEDGT--VVFRNGRVVSADVIMHCTGYKYNYPFLET-------NGIV 291 (446)
Q Consensus 232 -----~~~~-----~~~~~~-~~v~~~~~v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~~-------~g~i 291 (446)
+..+ +.+.+. .++.....|.++.+++. ....++.++++|.||+|+|+.|+.+++.. .|.|
T Consensus 185 l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i 264 (444)
T PRK09564 185 LPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAI 264 (444)
T ss_pred CchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCE
Confidence 1111 111222 25566778888865543 23345667999999999999999876543 3456
Q ss_pred eeCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCC
Q 013303 292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~ 344 (446)
.+|+..+ ++.|+||++|++... ...+.+..||+.+|++|.|..
T Consensus 265 ~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 265 IVDEYGE----------TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH 318 (444)
T ss_pred EECCCcc----------cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence 6666544 458999999988642 234678899999999999853
No 46
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.7e-28 Score=222.22 Aligned_cols=302 Identities=19% Similarity=0.233 Sum_probs=208.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+|.+|||||.+|+++|+..+..|.++.++|..-.+||+|... ||.|.+.++..+.|....... .
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~--------GCVPKKvm~~~a~~~~~~~da-------~ 84 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV--------GCVPKKVMWYAADYSEEMEDA-------K 84 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee--------ccccceeEEehhhhhHHhhhh-------h
Confidence 3689999999999999999999999999999987999999986 999998877777664332221 1
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~V 158 (446)
+|-|+... ..--.+..+.+--..|+.+++ +-+...-+..|.-|+-... +.-.|+++..++....+++.++
T Consensus 85 ~yG~~~~~-------~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~i 157 (478)
T KOG0405|consen 85 DYGFPINE-------EGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHI 157 (478)
T ss_pred hcCCcccc-------ccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceE
Confidence 23333221 111123444444444444431 2111222445554442210 1223344333333456899999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----cc
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DE 233 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~ 233 (446)
+|||| .+|.+|+|||.+. .+.|..+.+.++ .+||++|||+|++|+|+|.-++.+|.+++++.|... ++
T Consensus 158 LIAtG--g~p~~PnIpG~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~ 230 (478)
T KOG0405|consen 158 LIATG--GRPIIPNIPGAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDE 230 (478)
T ss_pred EEEeC--CccCCCCCCchhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhH
Confidence 99999 9999999999764 355555555554 468999999999999999999999999999999875 22
Q ss_pred cc-----ccCCCCC-CeeeccceeEEccCC----cEEecCCcEEeecEEEEecCccCCCCCC---------CCCCeeeeC
Q 013303 234 TH-----EKQPGYD-NMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTGYKYNYPFL---------ETNGIVTVD 294 (446)
Q Consensus 234 ~~-----~~~~~~~-~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~atG~~~~~~~l---------~~~g~i~~~ 294 (446)
.+ +.+...+ +++..+.+.++.... .+..+.|+...+|.++||+|+.|+..-| ++.|.|.+|
T Consensus 231 ~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD 310 (478)
T KOG0405|consen 231 MISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD 310 (478)
T ss_pred HHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe
Confidence 22 2222222 555566666665322 1445666555699999999999997664 356677788
Q ss_pred CCCcccccccccCCCCCCCeEEecCCC-ccCchhHHHHHHHHHHHHHcC
Q 013303 295 DNRVGPLYKHVFPPVLAPGLSFVGIPQ-KVIPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 295 ~~~~~~l~~~~~~~~~~p~l~~iG~~~-~~~~~~~~~~qa~~~a~~l~g 342 (446)
++.. ++.|+||++|+.. .....|.+-+.++-++..+-|
T Consensus 311 eYq~----------Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 311 EYQN----------TNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred cccc----------CCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 8776 7799999999876 456678999999998888776
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.96 E-value=2.4e-28 Score=244.70 Aligned_cols=260 Identities=25% Similarity=0.329 Sum_probs=179.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-----------------------------------ip 177 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG-----------------------------------IP 177 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec-----------------------------------CC
Confidence 4799999999999999999999999999999999999988752 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ....++.+...+..++.++. +++++.|. ..+++.+. ...||+||+|
T Consensus 178 ~~----------------~~~~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~~-----~~~yd~viiA 225 (449)
T TIGR01316 178 EF----------------RLPKEIVVTEIKTLKKLGVT--FRMNFLVG---------KTATLEEL-----FSQYDAVFIG 225 (449)
T ss_pred Cc----------------cCCHHHHHHHHHHHHhCCcE--EEeCCccC---------CcCCHHHH-----HhhCCEEEEe
Confidence 01 11145556666666777877 77776441 22333221 2469999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecC--------------CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~--------------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~ 227 (446)
||. +.|+.|.+||.+. .+ +++..++. ......+++|+|||+|.+|+|+|..+++.|.+|+++.
T Consensus 226 tGa-~~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~ 302 (449)
T TIGR01316 226 TGA-GLPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLY 302 (449)
T ss_pred CCC-CCCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 994 2688899999763 22 33332221 1123468999999999999999999999999999999
Q ss_pred ecCCcc------ccccCCCCC-CeeeccceeEEccC--Cc---EEec---------CC-----------cEEeecEEEEe
Q 013303 228 RSVADE------THEKQPGYD-NMWLHSMVERANED--GT---VVFR---------NG-----------RVVSADVIMHC 275 (446)
Q Consensus 228 r~~~~~------~~~~~~~~~-~v~~~~~v~~i~~~--~~---v~~~---------dG-----------~~~~~D~vi~a 275 (446)
|+...+ .+..+.+.+ .+.....+.++..+ +. |.+. +| .++++|.||+|
T Consensus 303 ~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~A 382 (449)
T TIGR01316 303 RRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVA 382 (449)
T ss_pred ecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEEC
Confidence 876411 112222222 44555666666432 22 3332 23 25889999999
Q ss_pred cCccCCCCCCCC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHc
Q 013303 276 TGYKYNYPFLET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLS 341 (446)
Q Consensus 276 tG~~~~~~~l~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~ 341 (446)
+|+.|+..+++. .|.|.+|+..+ ++.|+||++|++..+. ....+..||+.+|..+.
T Consensus 383 iG~~p~~~~l~~~gl~~~~~G~i~vd~~~~----------Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 383 IGNGSNPIMAETTRLKTSERGTIVVDEDQR----------TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred CCCCCCchhhhccCcccCCCCeEEeCCCCc----------cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999877643 34455555433 5589999999886433 45677889999998874
No 48
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.96 E-value=3e-28 Score=258.07 Aligned_cols=271 Identities=18% Similarity=0.228 Sum_probs=191.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~ 77 (446)
+++|+|||||+||+.+|..|++. +++|+||++++.++ |.. . ..+.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r-~--------------~L~~~----------- 52 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDR-V--------------HLSSY----------- 52 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccC-C--------------cchHh-----------
Confidence 45999999999999999999864 47999999987541 110 0 00000
Q ss_pred cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~ 157 (446)
+.. ...+++.....++.++.+++ ++.+++|+.|++.. .+|++.++. ++.||+
T Consensus 53 --~~~-----------------~~~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~~---~~V~~~~G~----~i~yD~ 104 (847)
T PRK14989 53 --FSH-----------------HTAEELSLVREGFYEKHGIK--VLVGERAITINRQE---KVIHSSAGR----TVFYDK 104 (847)
T ss_pred --HcC-----------------CCHHHccCCCHHHHHhCCCE--EEcCCEEEEEeCCC---cEEEECCCc----EEECCE
Confidence 000 01133333344556667887 88899999998643 566665543 789999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-
Q 013303 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (446)
Q Consensus 158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~- 231 (446)
|||||| +.|..|++||.+.. .++......+.. ...+++++|||+|.+|+|+|..|++.|.+|+++++.+.
T Consensus 105 LVIATG--s~p~~p~ipG~~~~--~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 105 LIMATG--SYPWIPPIKGSETQ--DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred EEECCC--CCcCCCCCCCCCCC--CeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 999999 89999999998642 122221211111 12578999999999999999999999999999998764
Q ss_pred -cc--------cc-ccCCCCC-CeeeccceeEEccCC-----cEEecCCcEEeecEEEEecCccCCCCCCC-------CC
Q 013303 232 -DE--------TH-EKQPGYD-NMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTGYKYNYPFLE-------TN 288 (446)
Q Consensus 232 -~~--------~~-~~~~~~~-~v~~~~~v~~i~~~~-----~v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~ 288 (446)
.. .+ +.+.+.+ ++.....++++..++ .+.+.||+++++|.||+|+|++|+..++. +.
T Consensus 181 l~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~ 260 (847)
T PRK14989 181 MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPR 260 (847)
T ss_pred hhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCC
Confidence 10 11 1122222 566677888886432 27789999999999999999999987653 34
Q ss_pred CeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-----chhHHHHHHHHHHHHHcCCC
Q 013303 289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----PFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----~~~~~~~qa~~~a~~l~g~~ 344 (446)
|.|.+|++++ +++|+||++|++.... ....+..||+.+|.+|.|..
T Consensus 261 G~I~VD~~l~----------Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 261 GGIVINDSCQ----------TSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred CcEEECCCCc----------CCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 5677777766 5699999999886431 23456789999999999864
No 49
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.96 E-value=6.5e-28 Score=253.85 Aligned_cols=269 Identities=20% Similarity=0.252 Sum_probs=176.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||||||+||..|++.|++|+|||+.+.+||.+.+. .
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~-----------------------------------I- 582 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI-----------------------------------I- 582 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee-----------------------------------c-
Confidence 4789999999999999999999999999999999999988652 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+.|....++.++..+++...|++ +++++.| .+... .. ....||+||||
T Consensus 583 ---------------P~~Rlp~evL~~die~l~~~GVe--~~~gt~V-di~le----------~L----~~~gYDaVILA 630 (1019)
T PRK09853 583 ---------------PQFRIPAELIQHDIEFVKAHGVK--FEFGCSP-DLTVE----------QL----KNEGYDYVVVA 630 (1019)
T ss_pred ---------------ccccccHHHHHHHHHHHHHcCCE--EEeCcee-EEEhh----------hh----eeccCCEEEEC
Confidence 01111134555556677778887 8888876 22211 11 13569999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecC-----C-CCCCCCCEEEEEecCCcHHHHHHHHhcc-C-CEEEEEEecCC--
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----I-PNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA-- 231 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-----~-~~~~~~k~VvVVG~G~sg~eia~~l~~~-~-~~V~l~~r~~~-- 231 (446)
||. ..+..+.++|.+. .+++..++. . .....|++|+|||+|.+|+|+|..+.+. + ++|+++.|+..
T Consensus 631 TGA-~~~~~l~IpG~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~ 706 (1019)
T PRK09853 631 IGA-DKNGGLKLEGGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE 706 (1019)
T ss_pred cCC-CCCCCCCCCCccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc
Confidence 995 2355567887642 223322211 1 1123589999999999999999998877 3 58999998763
Q ss_pred ----ccccccCCCCC-CeeeccceeEEccCCcE-------------------EecCCcEEeecEEEEecCccCCCCCCCC
Q 013303 232 ----DETHEKQPGYD-NMWLHSMVERANEDGTV-------------------VFRNGRVVSADVIMHCTGYKYNYPFLET 287 (446)
Q Consensus 232 ----~~~~~~~~~~~-~v~~~~~v~~i~~~~~v-------------------~~~dG~~~~~D~vi~atG~~~~~~~l~~ 287 (446)
.+.+....+.+ .+.....+.++..++.+ ...++.++++|.||+|+|..|+.+++..
T Consensus 707 MPA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~ 786 (1019)
T PRK09853 707 MPAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKA 786 (1019)
T ss_pred ccccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHh
Confidence 11111111111 33333344444322221 1223356899999999999999888754
Q ss_pred CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCCC
Q 013303 288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRIV 345 (446)
Q Consensus 288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~~ 345 (446)
.| +.+++... +..+..+. ++.|+||++|++.. ......+..||+.+|+++.+...
T Consensus 787 ~G-L~ld~~G~-I~VDetlq-Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 787 NG-IPLDKKGW-PVVDANGE-TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cC-ccccCCCC-EEeCCCcc-cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 33 33332221 11122223 44899999998864 33456778999999999988665
No 50
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.96 E-value=5.5e-28 Score=239.14 Aligned_cols=272 Identities=12% Similarity=0.157 Sum_probs=181.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
+++|+|||||+||++||..|++.|. +|+|+++++... |.. ... ++....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r-----------------~~l--------~~~~~~ 53 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YER-----------------PPL--------SKSMLL 53 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCC-----------------CCC--------CHHHHC
Confidence 4689999999999999999999876 799999875431 100 000 000000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
.+.. ...+... .++..+.+++ ++.++.|..++... .+|++.++. ++.||+||
T Consensus 54 ---~~~~---------~~~~~~~-------~~~~~~~~i~--~~~g~~V~~id~~~---~~v~~~~g~----~~~yd~LV 105 (396)
T PRK09754 54 ---EDSP---------QLQQVLP-------ANWWQENNVH--LHSGVTIKTLGRDT---RELVLTNGE----SWHWDQLF 105 (396)
T ss_pred ---CCCc---------cccccCC-------HHHHHHCCCE--EEcCCEEEEEECCC---CEEEECCCC----EEEcCEEE
Confidence 0000 0000000 1223345676 78888999998753 566665543 79999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--- 231 (446)
+||| +.|+.|++++... ..+.......+. ....+++|+|||+|.+|+|+|..|++.+.+|+++++.+.
T Consensus 106 iATG--s~~~~~p~~~~~~--~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 106 IATG--AAARPLPLLDALG--ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred EccC--CCCCCCCCCCcCC--CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 9999 8887777665432 123222111111 112578999999999999999999999999999998664
Q ss_pred ---ccc----c-ccCCCCC-CeeeccceeEEccCCc--EEecCCcEEeecEEEEecCccCCCCCCCC-----CCeeeeCC
Q 013303 232 ---DET----H-EKQPGYD-NMWLHSMVERANEDGT--VVFRNGRVVSADVIMHCTGYKYNYPFLET-----NGIVTVDD 295 (446)
Q Consensus 232 ---~~~----~-~~~~~~~-~v~~~~~v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~~-----~g~i~~~~ 295 (446)
+.. + +.+.+.+ ++..+..|+++..++. +.+.||+++++|.||+|+|..|+..++.. ++.|.+|+
T Consensus 182 ~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~gi~vd~ 261 (396)
T PRK09754 182 RNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTANGIVIDE 261 (396)
T ss_pred hhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcCCCEEECC
Confidence 111 1 1111222 5566778888865433 56789999999999999999999776432 23466676
Q ss_pred CCcccccccccCCCCCCCeEEecCCCcc----------CchhHHHHHHHHHHHHHcCCC
Q 013303 296 NRVGPLYKHVFPPVLAPGLSFVGIPQKV----------IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~~----------~~~~~~~~qa~~~a~~l~g~~ 344 (446)
+++ ++.|+||++|++... ..++.+..||+.+|++|.|..
T Consensus 262 ~~~----------ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 262 ACR----------TCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred CCc----------cCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 655 558999999987521 123678999999999999863
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=99.96 E-value=3.4e-28 Score=244.00 Aligned_cols=271 Identities=21% Similarity=0.250 Sum_probs=177.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||||||++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 184 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG-----------------------------------IP 184 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence 5799999999999999999999999999999999999998763 01
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.|.+ +.+++..+..++++++|+. +++++.|.. .+++++.. ..+.||+||||
T Consensus 185 ~~~l---------------~~~~~~~~~~~~~~~~gv~--i~~~~~v~~---------~v~~~~~~---~~~~~d~viiA 235 (464)
T PRK12831 185 EFRL---------------PKETVVKKEIENIKKLGVK--IETNVVVGK---------TVTIDELL---EEEGFDAVFIG 235 (464)
T ss_pred CccC---------------CccHHHHHHHHHHHHcCCE--EEcCCEECC---------cCCHHHHH---hccCCCEEEEe
Confidence 1111 1134667777778888887 888876521 12221111 13569999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecC-------------CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-------------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
||. ..|+.|++||.+. .| ++...++. ......+|+|+|||+|.+|+|+|..+.+.|.+|+++.|
T Consensus 236 tGa-~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r 312 (464)
T PRK12831 236 SGA-GLPKFMGIPGENL-NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYR 312 (464)
T ss_pred CCC-CCCCCCCCCCcCC-cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEee
Confidence 994 2688889999763 22 33222221 11235789999999999999999999999999999998
Q ss_pred cCCcc------ccccCCCCC-CeeeccceeEEcc--CCc---EEec------------------CCc--EEeecEEEEec
Q 013303 229 SVADE------THEKQPGYD-NMWLHSMVERANE--DGT---VVFR------------------NGR--VVSADVIMHCT 276 (446)
Q Consensus 229 ~~~~~------~~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~~------------------dG~--~~~~D~vi~at 276 (446)
....+ .+..+.+.+ .+.....+.++.. ++. |.+. +|+ ++++|.||+|+
T Consensus 313 ~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~Ai 392 (464)
T PRK12831 313 RSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSL 392 (464)
T ss_pred cCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECC
Confidence 75311 111111122 3444455555542 222 2221 233 58899999999
Q ss_pred CccCCCCCCCC-CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHc
Q 013303 277 GYKYNYPFLET-NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLS 341 (446)
Q Consensus 277 G~~~~~~~l~~-~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~ 341 (446)
|+.|+..++.. .| +..++..........+. ++.|+||++|++..+. ....+..||+.+|..+.
T Consensus 393 G~~p~~~~~~~~~g-l~~~~~G~i~vd~~~~~-Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 393 GTSPNPLISSTTKG-LKINKRGCIVADEETGL-TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred CCCCChhhhcccCC-ceECCCCcEEECCCCCc-cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999877653 22 33332211111111122 5589999999886433 34567778888877764
No 52
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.96 E-value=5.9e-28 Score=240.62 Aligned_cols=276 Identities=17% Similarity=0.234 Sum_probs=182.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+++|||||||+||+.+|+.|.+.+.+|+|||+++.. .+. ++.. ..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~----~~~-------------------~~l~-------~~----- 54 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM----LFT-------------------PLLP-------QT----- 54 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc----chh-------------------hhHH-------Hh-----
Confidence 579999999999999999998778899999987632 110 0000 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC----CceEEEEEcE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD----DVVEEETFDA 157 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~----~~~~~~~~d~ 157 (446)
.......+++...+...++.+++. ....+|++|+... ...++...... ....++.||+
T Consensus 55 --------------~~g~~~~~~~~~~~~~~~~~~~~~---~i~~~V~~Id~~~-~~v~~~~~~~~~~~~~~g~~i~yD~ 116 (424)
T PTZ00318 55 --------------TTGTLEFRSICEPVRPALAKLPNR---YLRAVVYDVDFEE-KRVKCGVVSKSNNANVNTFSVPYDK 116 (424)
T ss_pred --------------cccCCChHHhHHHHHHHhccCCeE---EEEEEEEEEEcCC-CEEEEecccccccccCCceEecCCE
Confidence 000111234444556656655543 3467999998765 33333221110 1224799999
Q ss_pred EEEccCCCCCCccCCCCCCCCC--Ccc-EEEeeecC--------CC--------CCCCCCEEEEEecCCcHHHHHHHHhc
Q 013303 158 VVVCNGHFSVPRLAQVPGIDSW--PGK-QMHSHNYR--------IP--------NPFQDQVVILIGHYASGLDIKRDLAG 218 (446)
Q Consensus 158 VVvAtG~~s~p~~p~i~G~~~~--~g~-~~hs~~~~--------~~--------~~~~~k~VvVVG~G~sg~eia~~l~~ 218 (446)
||+||| +.|..|.+||.++. ... +.+...++ .. ...+.++|+|||+|.+|+|+|.+|+.
T Consensus 117 LViAtG--s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~ 194 (424)
T PTZ00318 117 LVVAHG--ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELAD 194 (424)
T ss_pred EEECCC--cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHH
Confidence 999999 88999999997542 100 00000000 00 01233599999999999999999986
Q ss_pred --------------cCCEEEEEEecCC-----ccc-----cccCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEE
Q 013303 219 --------------FAKEVHIASRSVA-----DET-----HEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIM 273 (446)
Q Consensus 219 --------------~~~~V~l~~r~~~-----~~~-----~~~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi 273 (446)
.+.+|+++++.+. +.. .+.+.+.+ ++..+..|.++.++ .|.++||+++++|.||
T Consensus 195 ~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~-~v~~~~g~~i~~d~vi 273 (424)
T PTZ00318 195 FFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK-EVVLKDGEVIPTGLVV 273 (424)
T ss_pred HHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC-EEEECCCCEEEccEEE
Confidence 3688999998754 111 11222222 56667889999765 4999999999999999
Q ss_pred EecCccCCCCCC-------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc------CchhHHHHHHHHHHHHH
Q 013303 274 HCTGYKYNYPFL-------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV------IPFPFFELQSKWIASVL 340 (446)
Q Consensus 274 ~atG~~~~~~~l-------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~------~~~~~~~~qa~~~a~~l 340 (446)
+|+|.+|+ +++ ++.|.|.+|++++. +++|+||++|++... .....+..||+++|++|
T Consensus 274 ~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~---------~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni 343 (424)
T PTZ00318 274 WSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRV---------KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEF 343 (424)
T ss_pred EccCCCCc-chhhhcCCcccCCCcEEeCCCccc---------CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999997 443 33466777776542 348999999998642 23456789999999998
Q ss_pred cCC
Q 013303 341 SGR 343 (446)
Q Consensus 341 ~g~ 343 (446)
.+.
T Consensus 344 ~~~ 346 (424)
T PTZ00318 344 NNE 346 (424)
T ss_pred HHH
Confidence 654
No 53
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.96 E-value=8.5e-28 Score=255.01 Aligned_cols=269 Identities=16% Similarity=0.211 Sum_probs=188.4
Q ss_pred EEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 5 VAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 5 V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
|+|||||+||+.+|..|++. +++|+|||+++.++ |.. . . .+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----y~r-~----------------~--------L~~------ 45 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----YNR-I----------------L--------LSS------ 45 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----ccc-c----------------c--------ccH------
Confidence 68999999999999999875 46999999987552 110 0 0 000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+. ....+.+++.....++.++.+++ ++++++|+.|++.. ++|++.++. ++.||+||+|
T Consensus 46 -~l------------~g~~~~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~~---k~V~~~~g~----~~~yD~LVlA 103 (785)
T TIGR02374 46 -VL------------QGEADLDDITLNSKDWYEKHGIT--LYTGETVIQIDTDQ---KQVITDAGR----TLSYDKLILA 103 (785)
T ss_pred -HH------------CCCCCHHHccCCCHHHHHHCCCE--EEcCCeEEEEECCC---CEEEECCCc----EeeCCEEEEC
Confidence 00 00001123332334455667887 88899999998753 677776653 7899999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---- 232 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---- 232 (446)
|| +.|+.|++||.+. .+ +.......+.. ...+++|+|||+|.+|+|+|..|++.|.+|+++++.+..
T Consensus 104 TG--s~p~~p~ipG~~~-~~-v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ 179 (785)
T TIGR02374 104 TG--SYPFILPIPGADK-KG-VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQ 179 (785)
T ss_pred CC--CCcCCCCCCCCCC-CC-EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhh
Confidence 99 8999999999764 22 22222111111 124789999999999999999999999999999987641
Q ss_pred --c----cc-ccCCCCC-CeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCCCC-----CCeeeeCCC
Q 013303 233 --E----TH-EKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFLET-----NGIVTVDDN 296 (446)
Q Consensus 233 --~----~~-~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l~~-----~g~i~~~~~ 296 (446)
. .+ +.+.+.+ ++..+..+.++.+++. |.|+||+++++|.||+|+|++|+.+++.. ++.|.+|++
T Consensus 180 ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~ggI~Vd~~ 259 (785)
T TIGR02374 180 LDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVNRGIIVNDS 259 (785)
T ss_pred cCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccCCCEEECCC
Confidence 0 01 1112222 5666777888865442 78899999999999999999999887532 244677776
Q ss_pred CcccccccccCCCCCCCeEEecCCCccC-----chhHHHHHHHHHHHHHcCCC
Q 013303 297 RVGPLYKHVFPPVLAPGLSFVGIPQKVI-----PFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 297 ~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----~~~~~~~qa~~~a~~l~g~~ 344 (446)
++ +++|+||++|++.... ....+..||+.+|++|.|..
T Consensus 260 ~~----------Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 260 MQ----------TSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred cc----------cCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 55 5689999999885321 23446789999999999865
No 54
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.95 E-value=4.6e-27 Score=251.30 Aligned_cols=269 Identities=19% Similarity=0.214 Sum_probs=183.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||||||+||..|++.|++|+|||+.+.+||.+.+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------------------- 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------------------- 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-------------------------------------
Confidence 4899999999999999999999999999999999999998873
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+.|-...++.+...+.++.+|+. ++.|+.|- ..+++++.. ...||+||||
T Consensus 349 --------------IP~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~vG---------~dit~~~l~----~~~yDAV~LA 399 (944)
T PRK12779 349 --------------IPEFRLPNQLIDDVVEKIKLLGGR--FVKNFVVG---------KTATLEDLK----AAGFWKIFVG 399 (944)
T ss_pred --------------CCCCcChHHHHHHHHHHHHhhcCe--EEEeEEec---------cEEeHHHhc----cccCCEEEEe
Confidence 111222356777777788888887 77776542 223433321 3569999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecC--------------CC-CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IP-NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~--------------~~-~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~ 226 (446)
||. ..|+.+++||.+. .| +....+|. .+ ....||+|+|||+|.+|+|+|..+.+.|++|+++
T Consensus 400 tGA-~~pr~l~IpG~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv 476 (944)
T PRK12779 400 TGA-GLPTFMNVPGEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIV 476 (944)
T ss_pred CCC-CCCCcCCCCCCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 995 3688899999753 22 22222211 01 1247899999999999999999999999999999
Q ss_pred EecCCc------cccccCCCC-CCeeeccceeEEccC--C-cE---Ee-----------------cCCc--EEeecEEEE
Q 013303 227 SRSVAD------ETHEKQPGY-DNMWLHSMVERANED--G-TV---VF-----------------RNGR--VVSADVIMH 274 (446)
Q Consensus 227 ~r~~~~------~~~~~~~~~-~~v~~~~~v~~i~~~--~-~v---~~-----------------~dG~--~~~~D~vi~ 274 (446)
.|++.. ..+....+. ..+.....+.+|..+ + .| .+ .+|+ ++++|.||+
T Consensus 477 ~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~ 556 (944)
T PRK12779 477 YRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM 556 (944)
T ss_pred EecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEE
Confidence 987531 111111111 233344455555432 1 11 11 1232 488999999
Q ss_pred ecCccCCCCCCC--------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcCCCC
Q 013303 275 CTGYKYNYPFLE--------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSGRIV 345 (446)
Q Consensus 275 atG~~~~~~~l~--------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g~~~ 345 (446)
|+|+.|+..+.. +.|.|.+|+. .+. |+.|+||++|++..+. ....+..+++.+|..+...+.
T Consensus 557 AiG~~p~~~l~~~~~gle~~~~G~I~vd~~--------~~~-Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 557 ALGNTANPIMKDAEPGLKTNKWGTIEVEKG--------SQR-TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred cCCcCCChhhhhcccCceECCCCCEEECCC--------CCc-cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999864422 2233444432 122 4589999999987543 446677899999999887666
Q ss_pred CCC
Q 013303 346 LPS 348 (446)
Q Consensus 346 lp~ 348 (446)
+..
T Consensus 628 ~~~ 630 (944)
T PRK12779 628 FTP 630 (944)
T ss_pred ccc
Confidence 543
No 55
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.95 E-value=3.1e-27 Score=237.89 Aligned_cols=260 Identities=23% Similarity=0.291 Sum_probs=178.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gi------------------------------------ 183 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGI------------------------------------ 183 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccC------------------------------------
Confidence 47999999999999999999999999999999999999876520
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+.+....++.++..+.+++++++ +++++.|.. .+++.+. ...||+||+|
T Consensus 184 ---------------p~~~~~~~~~~~~~~~l~~~gv~--~~~~~~v~~---------~v~~~~~-----~~~~d~vvlA 232 (457)
T PRK11749 184 ---------------PEFRLPKDIVDREVERLLKLGVE--IRTNTEVGR---------DITLDEL-----RAGYDAVFIG 232 (457)
T ss_pred ---------------CCccCCHHHHHHHHHHHHHcCCE--EEeCCEECC---------ccCHHHH-----HhhCCEEEEc
Confidence 00111246677777778888877 777776521 1111111 2679999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecCC--------CCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCCc
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRI--------PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVAD 232 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~--------~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~~ 232 (446)
||. ..|+.+.+||.+. .+ +++..++.. .....+++|+|||+|.+|+|+|..+++.+. +|+++.+++..
T Consensus 233 tGa-~~~~~~~i~G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~ 309 (457)
T PRK11749 233 TGA-GLPRFLGIPGENL-GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE 309 (457)
T ss_pred cCC-CCCCCCCCCCccC-CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc
Confidence 994 2477778888753 22 333322211 112368999999999999999999999877 89999986531
Q ss_pred ------cccccCCCCC-CeeeccceeEEccCCc----EEec-------------------CCcEEeecEEEEecCccCCC
Q 013303 233 ------ETHEKQPGYD-NMWLHSMVERANEDGT----VVFR-------------------NGRVVSADVIMHCTGYKYNY 282 (446)
Q Consensus 233 ------~~~~~~~~~~-~v~~~~~v~~i~~~~~----v~~~-------------------dG~~~~~D~vi~atG~~~~~ 282 (446)
..+..+.+.+ ++.....+.++..++. |.+. +++++++|.||+|+|++|+.
T Consensus 310 ~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 310 EMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred cCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 1111222222 4555667777754431 4442 22468999999999999996
Q ss_pred CCCC--------CCCeeeeCC-CCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHc
Q 013303 283 PFLE--------TNGIVTVDD-NRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLS 341 (446)
Q Consensus 283 ~~l~--------~~g~i~~~~-~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~ 341 (446)
.++. +.|.+.+|+ ..+ ++.|+||++|++..+ .....+..||+.+|.++.
T Consensus 390 ~l~~~~~gl~~~~~g~i~vd~~~~~----------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 390 LILSTTPGLELNRWGTIIADDETGR----------TSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred hhhccccCccCCCCCCEEeCCCCCc----------cCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 6543 234455554 222 458999999988643 345667889998887764
No 56
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.95 E-value=2.2e-27 Score=217.69 Aligned_cols=311 Identities=18% Similarity=0.222 Sum_probs=203.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeec-CCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVN-LPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~-~~~~~~~ 79 (446)
.+||+|||+||+|..||...++.|++.+++|++..+||+|... ||+||++++..+ +|+.+... .......
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv--------GcIPSKALL~nSh~yh~~q~~~~~~rGi~ 110 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV--------GCIPSKALLNNSHLYHEAQHEDFASRGID 110 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec--------cccccHHHhhhhHHHHHHhhhHHHhcCcc
Confidence 4799999999999999999999999999999999999999986 999999888654 56555441 1111111
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~--~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~ 155 (446)
.+.. -...+.+.+...+.++++ ++...+. ..+|+.+.-... +..+|.+...+++.+.+.+
T Consensus 111 vs~~---------------~~dl~~~~~~k~~~vk~Lt~gi~~lfk-knkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~a 174 (506)
T KOG1335|consen 111 VSSV---------------SLDLQAMMKAKDNAVKQLTGGIENLFK-KNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKA 174 (506)
T ss_pred ccce---------------ecCHHHHHHHHHHHHHHHhhHHHHHhh-hcCeEEEeeeEeecCCceEEEeccCCCceEEee
Confidence 1111 112344555554444443 2221111 123333332111 4466777666667789999
Q ss_pred cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (446)
Q Consensus 156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---- 231 (446)
+.+||||| | .++++||+.--..+++.| .-...-..-+++.+|||+|.+|+|++.-..++|.+||++.--+.
T Consensus 175 KnIiiATG--S--eV~~~PGI~IDekkIVSS-tgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 175 KNIIIATG--S--EVTPFPGITIDEKKIVSS-TGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred eeEEEEeC--C--ccCCCCCeEecCceEEec-CCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 99999999 5 234566764222334443 33223344679999999999999999999999999999987654
Q ss_pred -cc----ccccCC-CCC-CeeeccceeEEccCCc----EEecC---C--cEEeecEEEEecCccCCCCCCC--CCCeeee
Q 013303 232 -DE----THEKQP-GYD-NMWLHSMVERANEDGT----VVFRN---G--RVVSADVIMHCTGYKYNYPFLE--TNGIVTV 293 (446)
Q Consensus 232 -~~----~~~~~~-~~~-~v~~~~~v~~i~~~~~----v~~~d---G--~~~~~D~vi~atG~~~~~~~l~--~~g~i~~ 293 (446)
+. .++++. +++ .+.+.+.+...+.++. |.+.| | ++++||++++|+|++|-+.-|+ .-| +..
T Consensus 250 mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iG-i~~ 328 (506)
T KOG1335|consen 250 MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIG-IEL 328 (506)
T ss_pred cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcc-ccc
Confidence 11 112222 222 5667777877765443 44433 3 3588999999999998776654 223 333
Q ss_pred CCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303 294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI 344 (446)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~ 344 (446)
|...+. .....|. +..|+||+||++..+ ...+-+|-|+..+.+.++|..
T Consensus 329 D~r~rv-~v~~~f~-t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~ 378 (506)
T KOG1335|consen 329 DKRGRV-IVNTRFQ-TKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH 378 (506)
T ss_pred ccccce-ecccccc-ccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence 444332 2233344 349999999987643 334667899999999999873
No 57
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.95 E-value=2e-27 Score=227.86 Aligned_cols=274 Identities=18% Similarity=0.252 Sum_probs=187.9
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
++++|||||||.+|+.+|+.|.+.. .+|+++|+++.- .+..+.....
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h---------------------------l~~plL~eva---- 50 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH---------------------------LFTPLLYEVA---- 50 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc---------------------------ccchhhhhhh----
Confidence 4789999999999999999999974 899999997521 1111111110
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~ 157 (446)
....+.+++.--++..+++.+ +. ....+|++|+.+. .+|++.++. ++.||+
T Consensus 51 ------------------~g~l~~~~i~~p~~~~~~~~~~v~---~~~~~V~~ID~~~---k~V~~~~~~----~i~YD~ 102 (405)
T COG1252 51 ------------------TGTLSESEIAIPLRALLRKSGNVQ---FVQGEVTDIDRDA---KKVTLADLG----EISYDY 102 (405)
T ss_pred ------------------cCCCChhheeccHHHHhcccCceE---EEEEEEEEEcccC---CEEEeCCCc----cccccE
Confidence 111222444444556555443 32 2356899998855 788887733 799999
Q ss_pred EEEccCCCCCCccCCCCCCCCCCccEEEee-----------ecCCCCCCCC----CEEEEEecCCcHHHHHHHHhccCC-
Q 013303 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSH-----------NYRIPNPFQD----QVVILIGHYASGLDIKRDLAGFAK- 221 (446)
Q Consensus 158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~-----------~~~~~~~~~~----k~VvVVG~G~sg~eia~~l~~~~~- 221 (446)
||||+| +.++.+.+||..++.-..-... .+...+.... .+|+|||||++|+|+|.+|++...
T Consensus 103 LVvalG--s~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~ 180 (405)
T COG1252 103 LVVALG--SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHR 180 (405)
T ss_pred EEEecC--CcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHH
Confidence 999999 9999999999766421110000 0111111111 379999999999999999986422
Q ss_pred ------------EEEEEEecCC-----cccc----c-cCCCCC-CeeeccceeEEccCCcEEecCCcE-EeecEEEEecC
Q 013303 222 ------------EVHIASRSVA-----DETH----E-KQPGYD-NMWLHSMVERANEDGTVVFRNGRV-VSADVIMHCTG 277 (446)
Q Consensus 222 ------------~V~l~~r~~~-----~~~~----~-~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~-~~~D~vi~atG 277 (446)
+|+++.+.+. ++.+ . .+.+.+ ++.++..|+++++++ |++.+|.+ +++|.+|||+|
T Consensus 181 l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-v~~~~g~~~I~~~tvvWaaG 259 (405)
T COG1252 181 LLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-VTLKDGEEEIPADTVVWAAG 259 (405)
T ss_pred HhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-EEEccCCeeEecCEEEEcCC
Confidence 8999999886 1111 1 122223 778889999998876 99999985 99999999999
Q ss_pred ccCCC------CCC-CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-------CchhHHHHHHHHHHHHHcCC
Q 013303 278 YKYNY------PFL-ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-------IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 278 ~~~~~------~~l-~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-------~~~~~~~~qa~~~a~~l~g~ 343 (446)
.+++. +.- +..|++.++++.+. ..+|+||++|++... +..+.+..||.++|+++..+
T Consensus 260 v~a~~~~~~l~~~e~dr~Grl~V~~~L~~---------~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~ 330 (405)
T COG1252 260 VRASPLLKDLSGLETDRRGRLVVNPTLQV---------PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKAR 330 (405)
T ss_pred CcCChhhhhcChhhhccCCCEEeCCCccc---------CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 99872 211 23477888887764 348999999998632 33466788999999998755
Q ss_pred CC
Q 013303 344 IV 345 (446)
Q Consensus 344 ~~ 345 (446)
+.
T Consensus 331 l~ 332 (405)
T COG1252 331 LK 332 (405)
T ss_pred hc
Confidence 43
No 58
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=4e-26 Score=222.25 Aligned_cols=274 Identities=22% Similarity=0.249 Sum_probs=177.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+.+|..|++.|++|++||+.+.+||.+.... +
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~-----------------------------------~ 62 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGI-----------------------------------P 62 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecC-----------------------------------c
Confidence 46999999999999999999999999999999999998876420 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE---cCCCceEEEEEeCCCceEEEEEcEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---VESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~---~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
.+. .+.+.+...+.++.+ .++. ++.++.|..+.. ...+.|........ ...+.||+|
T Consensus 63 ~~~---------------~~~~~~~~~~~~l~~-~~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~l 122 (352)
T PRK12770 63 EFR---------------IPIERVREGVKELEE-AGVV--FHTRTKVCCGEPLHEEEGDEFVERIVSLE--ELVKKYDAV 122 (352)
T ss_pred ccc---------------cCHHHHHHHHHHHHh-CCeE--EecCcEEeeccccccccccccccccCCHH--HHHhhCCEE
Confidence 000 112344555555544 4776 788888766532 11122222211111 113689999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeee-----------c---CCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE-E
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHN-----------Y---RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-V 223 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~-----------~---~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~-V 223 (446)
|+|||. ..|+.|++||.+. .+ +..+.+ + +....+.+++|+|||+|.+|+|+|..|+..+.+ |
T Consensus 123 viAtGs-~~~~~~~ipg~~~-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~V 199 (352)
T PRK12770 123 LIATGT-WKSRKLGIPGEDL-PG-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKV 199 (352)
T ss_pred EEEeCC-CCCCcCCCCCccc-cC-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 999993 2578888998753 11 222110 1 111234589999999999999999999888876 9
Q ss_pred EEEEecCCc------cccccCCCCC-CeeeccceeEEccCCc---EEec------------------C--CcEEeecEEE
Q 013303 224 HIASRSVAD------ETHEKQPGYD-NMWLHSMVERANEDGT---VVFR------------------N--GRVVSADVIM 273 (446)
Q Consensus 224 ~l~~r~~~~------~~~~~~~~~~-~v~~~~~v~~i~~~~~---v~~~------------------d--G~~~~~D~vi 273 (446)
+++.+.+.. ..+..+...+ .+.....+.++.+++. |.+. + ++++++|.||
T Consensus 200 tvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi 279 (352)
T PRK12770 200 YLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVV 279 (352)
T ss_pred EEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEE
Confidence 999986531 1112222222 4444556666654432 2221 2 2468899999
Q ss_pred EecCccCCCCCCCC--------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303 274 HCTGYKYNYPFLET--------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 274 ~atG~~~~~~~l~~--------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~ 343 (446)
+|+|++|+..+..+ .|.+.+|++.. ++.|+||++|++.. ......+..||+.+|..+...
T Consensus 280 ~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~----------t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 348 (352)
T PRK12770 280 FAIGEIPTPPFAKECLGIELNRKGEIVVDEKHM----------TSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEW 348 (352)
T ss_pred ECcccCCCchhhhcccCceecCCCcEeeCCCcc----------cCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999876543 23344444332 44899999998764 334566788999988887543
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=1.6e-26 Score=245.52 Aligned_cols=262 Identities=22% Similarity=0.299 Sum_probs=175.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||||||+||..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 475 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG-----------------------------------IP 475 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence 4799999999999999999999999999999998899998762 11
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+|.+ ..++.+...+.+++++++ ++.++.|. ..|++++. ....||+||||
T Consensus 476 ~~rl----------------p~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~l----~~~~ydavvlA 524 (752)
T PRK12778 476 EFRL----------------PKKIVDVEIENLKKLGVK--FETDVIVG---------KTITIEEL----EEEGFKGIFIA 524 (752)
T ss_pred CCCC----------------CHHHHHHHHHHHHHCCCE--EECCCEEC---------CcCCHHHH----hhcCCCEEEEe
Confidence 1111 134555556667778877 77776541 11222221 14569999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecC-------------CCCCCCCCEEEEEecCCcHHHHHHHHhccCCE-EEEEE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-VHIAS 227 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-------------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~-V~l~~ 227 (446)
||. ..|+.|++||.+. .| ++++.++. ......||+|+|||+|.+|+|+|..+.+.|.+ |++++
T Consensus 525 tGa-~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~ 601 (752)
T PRK12778 525 SGA-GLPNFMNIPGENS-NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVY 601 (752)
T ss_pred CCC-CCCCCCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEee
Confidence 994 2688889999763 22 33333221 11234689999999999999999999999886 99999
Q ss_pred ecCCcc------ccccCCCCC-CeeeccceeEEcc--CCc---EEec---------C---------C--cEEeecEEEEe
Q 013303 228 RSVADE------THEKQPGYD-NMWLHSMVERANE--DGT---VVFR---------N---------G--RVVSADVIMHC 275 (446)
Q Consensus 228 r~~~~~------~~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~~---------d---------G--~~~~~D~vi~a 275 (446)
|++... .+..+.+.+ .+.....+.++.. ++. |.+. + | .++++|.||+|
T Consensus 602 r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A 681 (752)
T PRK12778 602 RRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVS 681 (752)
T ss_pred ecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEEC
Confidence 876411 111111122 3333444555532 122 2221 2 2 24889999999
Q ss_pred cCccCCCCCCCC--------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcC
Q 013303 276 TGYKYNYPFLET--------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSG 342 (446)
Q Consensus 276 tG~~~~~~~l~~--------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g 342 (446)
+|+.|+..++.. .|.|.+|+... ++.|+||++|++..+. ....+..|++.+|..+..
T Consensus 682 ~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~----------Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 682 VGVSPNPLVPSSIPGLELNRKGTIVVDEEMQ----------SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred cCCCCCccccccccCceECCCCCEEeCCCCC----------CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999876543 23344444332 5589999999987543 456678888888887743
No 60
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-26 Score=194.77 Aligned_cols=263 Identities=18% Similarity=0.260 Sum_probs=186.4
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeC----CCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG----EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~----~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
.+|+|||.|||+-+||.++++..++.++||-. -.+||+...+..+ -
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~v------------------------------e 58 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDV------------------------------E 58 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeecc------------------------------c
Confidence 48999999999999999999999999999942 2346666543222 1
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
.|+.||- =..+.++.+.+++.+++||.+ | +...|.+++... ..|+|.++.. .+.+|.|
T Consensus 59 NfPGFPd-------------gi~G~~l~d~mrkqs~r~Gt~--i-~tEtVskv~~ss-kpF~l~td~~-----~v~~~av 116 (322)
T KOG0404|consen 59 NFPGFPD-------------GITGPELMDKMRKQSERFGTE--I-ITETVSKVDLSS-KPFKLWTDAR-----PVTADAV 116 (322)
T ss_pred cCCCCCc-------------ccccHHHHHHHHHHHHhhcce--e-eeeehhhccccC-CCeEEEecCC-----ceeeeeE
Confidence 2333332 134689999999999999987 3 456888888765 6788887553 6899999
Q ss_pred EEccCCCCCCccCCCCCC-CC-CCccEEEeeecCCCCC--CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303 159 VVCNGHFSVPRLAQVPGI-DS-WPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~-~~-~~g~~~hs~~~~~~~~--~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--- 231 (446)
|+||| ...+...+||. +. |..+.+.++..++... |++|..+|||||.|++|-|..|.+.+++|++++|++.
T Consensus 117 I~atG--AsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA 194 (322)
T KOG0404|consen 117 ILATG--ASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA 194 (322)
T ss_pred EEecc--cceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH
Confidence 99999 66666677776 33 7777788888888765 9999999999999999999999999999999999886
Q ss_pred cc-ccccCCCCCCeee--ccceeEEccCCc----EEec---CC--cEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcc
Q 013303 232 DE-THEKQPGYDNMWL--HSMVERANEDGT----VVFR---NG--RVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVG 299 (446)
Q Consensus 232 ~~-~~~~~~~~~~v~~--~~~v~~i~~~~~----v~~~---dG--~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~ 299 (446)
.. +.++..+..+|.. +..+.+..++++ +.+. .| +.++++-++++.|..|+..||+. .+..|.+...
T Consensus 195 s~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g--qve~d~~GYi 272 (322)
T KOG0404|consen 195 SKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG--QVELDEDGYI 272 (322)
T ss_pred HHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC--ceeeccCceE
Confidence 11 1223333444433 333334434432 3322 23 45889999999999999999853 2333333221
Q ss_pred cccccccCCCCCCCeEEecCCCc
Q 013303 300 PLYKHVFPPVLAPGLSFVGIPQK 322 (446)
Q Consensus 300 ~l~~~~~~~~~~p~l~~iG~~~~ 322 (446)
..-..... ++.|++|+.|++.+
T Consensus 273 ~t~pgts~-TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 273 VTRPGTSL-TSVPGVFAAGDVQD 294 (322)
T ss_pred EeccCccc-ccccceeeccccch
Confidence 11111111 56999999997764
No 61
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.94 E-value=3.9e-26 Score=241.70 Aligned_cols=263 Identities=20% Similarity=0.239 Sum_probs=169.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||||||+||..|++.|++|+|||+.+.+||...+. ++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-----------------------------------IP 581 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-----------------------------------IP 581 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-----------------------------------cc
Confidence 4799999999999999999999999999999999999987652 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
++ ....++.++..+.+..+|++ +++++.. ..+ +... ....||+||||
T Consensus 582 ~~----------------rlp~e~l~~~ie~l~~~GVe--~~~g~~~---------d~~--ve~l----~~~gYDaVIIA 628 (1012)
T TIGR03315 582 EF----------------RISAESIQKDIELVKFHGVE--FKYGCSP---------DLT--VAEL----KNQGYKYVILA 628 (1012)
T ss_pred cc----------------CCCHHHHHHHHHHHHhcCcE--EEEeccc---------ceE--hhhh----hcccccEEEEC
Confidence 00 00134455555666667776 6665321 011 1111 13569999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeec----CC--CCCCCCCEEEEEecCCcHHHHHHHHhcc-C-CEEEEEEecCCc-
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY----RI--PNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVAD- 232 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~----~~--~~~~~~k~VvVVG~G~sg~eia~~l~~~-~-~~V~l~~r~~~~- 232 (446)
||. ..+..+.++|... .++...++ .. .....+|+|+|||+|.+|+|+|..+.+. | ++|+++.|+...
T Consensus 629 TGA-~~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~ 704 (1012)
T TIGR03315 629 IGA-WKHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRY 704 (1012)
T ss_pred CCC-CCCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 995 2345556777532 22222221 11 1224689999999999999999998876 5 589999987631
Q ss_pred -----cccccCCCCC-CeeeccceeEEccCCcE-----------------EecCCc--EEeecEEEEecCccCCCCCCCC
Q 013303 233 -----ETHEKQPGYD-NMWLHSMVERANEDGTV-----------------VFRNGR--VVSADVIMHCTGYKYNYPFLET 287 (446)
Q Consensus 233 -----~~~~~~~~~~-~v~~~~~v~~i~~~~~v-----------------~~~dG~--~~~~D~vi~atG~~~~~~~l~~ 287 (446)
+.+....+.+ .+.....+.++. ++.+ ...+|+ ++++|.||+|+|..|+..++..
T Consensus 705 Mpa~~eEl~~aleeGVe~~~~~~p~~I~-~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~ 783 (1012)
T TIGR03315 705 MPASREELEEALEDGVDFKELLSPESFE-DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQK 783 (1012)
T ss_pred cccCHHHHHHHHHcCCEEEeCCceEEEE-CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHh
Confidence 1111111111 233333334443 1211 122444 5789999999999999877643
Q ss_pred C-------CeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCCCC
Q 013303 288 N-------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRIVL 346 (446)
Q Consensus 288 ~-------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~~l 346 (446)
. |.+.+|+. .+. ++.|+||++|++.. ......+..||+.+|..+.++...
T Consensus 784 ~GL~ld~~G~I~VD~~--------~~~-Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 784 NGIPLDEYGWPVVNQA--------TGE-TNITNVFVIGDANRGPATIVEAIADGRKAANAILSREGL 841 (1012)
T ss_pred cCcccCCCCCEEeCCC--------CCc-cCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccccC
Confidence 3 34444443 122 45899999998863 344567889999999999876543
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.94 E-value=8.5e-26 Score=235.38 Aligned_cols=268 Identities=22% Similarity=0.286 Sum_probs=170.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+. +
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g-----------------------------------i- 236 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG-----------------------------------I- 236 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec-----------------------------------C-
Confidence 4799999999999999999999999999999999999998762 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+.|....++.++..+.+.++|+. +++++.|. + .++..+. ...||+||+|
T Consensus 237 ---------------p~~~~~~~~~~~~~~~l~~~Gv~--i~~~~~v~-~--------dv~~~~~-----~~~~DaVilA 285 (652)
T PRK12814 237 ---------------PRFRLPESVIDADIAPLRAMGAE--FRFNTVFG-R--------DITLEEL-----QKEFDAVLLA 285 (652)
T ss_pred ---------------CCCCCCHHHHHHHHHHHHHcCCE--EEeCCccc-C--------ccCHHHH-----HhhcCEEEEE
Confidence 01111245566666677778877 77776541 1 1111111 2349999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecC-----CCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCCc---
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVAD--- 232 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-----~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~~--- 232 (446)
||. ..+..+.+||.+. .+ ++...++. ......+++|+|||+|.+|+|+|..+.+.|. +|+++.|+...
T Consensus 286 tGa-~~~~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mp 362 (652)
T PRK12814 286 VGA-QKASKMGIPGEEL-PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMP 362 (652)
T ss_pred cCC-CCCCCCCCCCcCc-CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence 994 2345677888653 23 22222221 1234578999999999999999999998875 69999987631
Q ss_pred ---cccccCC-CCCCeeeccceeEEccC-CcE-----Eec---------------CCc--EEeecEEEEecCccCCCCCC
Q 013303 233 ---ETHEKQP-GYDNMWLHSMVERANED-GTV-----VFR---------------NGR--VVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 233 ---~~~~~~~-~~~~v~~~~~v~~i~~~-~~v-----~~~---------------dG~--~~~~D~vi~atG~~~~~~~l 285 (446)
..+.... +...+.....+.++..+ +.+ .+. +|+ ++++|.||+|+|+.|+..++
T Consensus 363 a~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll 442 (652)
T PRK12814 363 ANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIA 442 (652)
T ss_pred CCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccc
Confidence 1111111 11244444455555421 111 111 233 48899999999999998887
Q ss_pred CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHc
Q 013303 286 ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLS 341 (446)
Q Consensus 286 ~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~ 341 (446)
...| +.++.+.........+. ++.|+||++|++..+. ....+..||+.+|.++.
T Consensus 443 ~~~g-l~~~~~G~I~vd~~~~~-Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 443 EAAG-IGTSRNGTVKVDPETLQ-TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred cccC-ccccCCCcEeeCCCCCc-CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 5433 22222221111111222 4589999999876433 33566778887777643
No 63
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.94 E-value=8.5e-26 Score=221.49 Aligned_cols=263 Identities=19% Similarity=0.235 Sum_probs=175.5
Q ss_pred eEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 4 HVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
+|+|||||+||+.+|+.|+++ +.+|+|||+++.. .+ ... .|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~~-----------------------~~~---~~------ 44 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PY-----------------------SGM---LP------ 44 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----cc-----------------------cch---hh------
Confidence 589999999999999999643 6899999987632 11 000 00
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
.+. ....+.+++...+.+++++++++ +.. .+|+.|+... .+|.+.++. ++.||+|||
T Consensus 45 -~~~------------~g~~~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~---~~V~~~~g~----~~~yD~Lvi 101 (364)
T TIGR03169 45 -GMI------------AGHYSLDEIRIDLRRLARQAGAR--FVI-AEATGIDPDR---RKVLLANRP----PLSYDVLSL 101 (364)
T ss_pred -HHH------------heeCCHHHhcccHHHHHHhcCCE--EEE-EEEEEEeccc---CEEEECCCC----cccccEEEE
Confidence 000 00112245555667777777876 554 5899998754 467776653 689999999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeee----------cCC-CC-CCCCCEEEEEecCCcHHHHHHHHhcc----C--CE
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHN----------YRI-PN-PFQDQVVILIGHYASGLDIKRDLAGF----A--KE 222 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~----------~~~-~~-~~~~k~VvVVG~G~sg~eia~~l~~~----~--~~ 222 (446)
||| +.|..|.+||.... +..... +.. .. ...+++|+|||+|.+|+|+|..|++. + .+
T Consensus 102 AtG--~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~ 176 (364)
T TIGR03169 102 DVG--STTPLSGVEGAADL---AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQ 176 (364)
T ss_pred ccC--CCCCCCCCCccccc---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCce
Confidence 999 89999999985431 111000 100 00 12457999999999999999999853 3 58
Q ss_pred EEEEEecCC-----c----ccc-ccCCCC-CCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCC------
Q 013303 223 VHIASRSVA-----D----ETH-EKQPGY-DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFL------ 285 (446)
Q Consensus 223 V~l~~r~~~-----~----~~~-~~~~~~-~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l------ 285 (446)
|+++ +.+. . ..+ +.+.+. -++.....+.++..+ .+.+.+|+++++|.||+|+|.+|+. ++
T Consensus 177 V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~v~~~~g~~i~~D~vi~a~G~~p~~-~l~~~gl~ 253 (364)
T TIGR03169 177 VTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG-ALILADGRTLPADAILWATGARAPP-WLAESGLP 253 (364)
T ss_pred EEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-eEEeCCCCEEecCEEEEccCCChhh-HHHHcCCC
Confidence 9998 4332 0 011 111122 245566788888654 5889999999999999999999973 33
Q ss_pred -CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC------chhHHHHHHHHHHHHHcC
Q 013303 286 -ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI------PFPFFELQSKWIASVLSG 342 (446)
Q Consensus 286 -~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~------~~~~~~~qa~~~a~~l~g 342 (446)
++.|.+.+|+..+ .++.|+||++|++.... ....+..||+.+|+++..
T Consensus 254 ~~~~g~i~vd~~l~---------~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 254 LDEDGFLRVDPTLQ---------SLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred cCCCCeEEECCccc---------cCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 3345666766544 12589999999886321 234578899999988854
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.93 E-value=3.7e-25 Score=238.77 Aligned_cols=275 Identities=19% Similarity=0.234 Sum_probs=178.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||||||+||..|++.|++|+|||+.+.+||...+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g------------------------------------- 472 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG------------------------------------- 472 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc-------------------------------------
Confidence 4799999999999999999999999999999999999987652
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+.|....++.+...+.++++|++ +++++.|. ..+++ .... ....||+||||
T Consensus 473 --------------ip~~rl~~e~~~~~~~~l~~~Gv~--~~~~~~vg-------~~~~~--~~l~---~~~~yDaViIA 524 (1006)
T PRK12775 473 --------------IPSFRLPRDIIDREVQRLVDIGVK--IETNKVIG-------KTFTV--PQLM---NDKGFDAVFLG 524 (1006)
T ss_pred --------------CCccCCCHHHHHHHHHHHHHCCCE--EEeCCccC-------CccCH--HHHh---hccCCCEEEEe
Confidence 111112256777777778888987 88776441 11111 1110 02459999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeec--------------CCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY--------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA 226 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~--------------~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~ 226 (446)
||. ..|+.|+|||.+. . .+++..+| .+.....||+|+|||+|.+|+|+|..+.+.|. .|+++
T Consensus 525 TGa-~~pr~l~IpG~~l-~-gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv 601 (1006)
T PRK12775 525 VGA-GAPTFLGIPGEFA-G-QVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCV 601 (1006)
T ss_pred cCC-CCCCCCCCCCcCC-C-CcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 994 2588899999653 2 23443322 11223578999999999999999999998876 58888
Q ss_pred EecCCccc------cccCCCCC-CeeeccceeEEcc--CCc---EEec-----------------CCc--EEeecEEEEe
Q 013303 227 SRSVADET------HEKQPGYD-NMWLHSMVERANE--DGT---VVFR-----------------NGR--VVSADVIMHC 275 (446)
Q Consensus 227 ~r~~~~~~------~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~~-----------------dG~--~~~~D~vi~a 275 (446)
.|+...+. +..+.+.+ ++.....+.++.. ++. |.+. +|+ ++++|.||+|
T Consensus 602 ~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~A 681 (1006)
T PRK12775 602 YRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYA 681 (1006)
T ss_pred eecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEEC
Confidence 88654111 11111222 4444455556532 232 2221 232 5899999999
Q ss_pred cCccCCCCCCC--------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHH----HcC
Q 013303 276 TGYKYNYPFLE--------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASV----LSG 342 (446)
Q Consensus 276 tG~~~~~~~l~--------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~----l~g 342 (446)
+|+.|+..++. ..|.|.+|+... ...+. ++.|+||++|++..+. ....+..+++.+|.. |.+
T Consensus 682 iG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v----~~~~~-Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 682 LGTKANPIITQSTPGLALNKWGNIAADDGKL----ESTQS-TNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred CCcCCChhhhhccCCcccCCCCcEEeCCCcc----ccCcC-CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999976543 234455553110 11223 4589999999986443 345677788877766 445
Q ss_pred CCCCCCH
Q 013303 343 RIVLPSQ 349 (446)
Q Consensus 343 ~~~lp~~ 349 (446)
....|..
T Consensus 757 ~~~~~~~ 763 (1006)
T PRK12775 757 GKKWPIT 763 (1006)
T ss_pred CCCcCCC
Confidence 4444433
No 65
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.93 E-value=5.4e-25 Score=221.98 Aligned_cols=267 Identities=20% Similarity=0.287 Sum_probs=169.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+. +
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-----------------------------------i- 186 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG-----------------------------------I- 186 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec-----------------------------------C-
Confidence 4799999999999999999999999999999999999988752 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+.|....++.+...+.+.++|++ +++++.|.. + ++... ....||+||+|
T Consensus 187 ---------------p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-~--------~~~~~-----~~~~~d~vvlA 235 (471)
T PRK12810 187 ---------------PDFKLEKEVIDRRIELMEAEGIE--FRTNVEVGK-D--------ITAEE-----LLAEYDAVFLG 235 (471)
T ss_pred ---------------CcccCCHHHHHHHHHHHHhCCcE--EEeCCEECC-c--------CCHHH-----HHhhCCEEEEe
Confidence 01111134566666677778887 888876531 1 00000 12469999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeec-------------CCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIAS 227 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~-------------~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~ 227 (446)
||. ..|+.+.+||.+. .| +.+..++ .......+++|+|||+|.+|+|+|..+.+.+. +|++..
T Consensus 236 tGa-~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~ 312 (471)
T PRK12810 236 TGA-YKPRDLGIPGRDL-DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD 312 (471)
T ss_pred cCC-CCCCcCCCCCccC-CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence 994 2377788888653 22 2221111 11124578999999999999999998877764 788665
Q ss_pred ecCC--cc--------------ccccCCCCC-CeeeccceeEEcc-CCcE---Ee-----cCC---------cEEeecEE
Q 013303 228 RSVA--DE--------------THEKQPGYD-NMWLHSMVERANE-DGTV---VF-----RNG---------RVVSADVI 272 (446)
Q Consensus 228 r~~~--~~--------------~~~~~~~~~-~v~~~~~v~~i~~-~~~v---~~-----~dG---------~~~~~D~v 272 (446)
+... .. .+..+.+.+ .+.....+.++.. ++.| .+ .+| .++++|.|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~V 392 (471)
T PRK12810 313 IMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLV 392 (471)
T ss_pred ccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEE
Confidence 4432 11 111111222 4555666777753 3332 22 232 45889999
Q ss_pred EEecCccCCCC-CCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHH
Q 013303 273 MHCTGYKYNYP-FLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVL 340 (446)
Q Consensus 273 i~atG~~~~~~-~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l 340 (446)
|+|+|+.|+.. ++...+ +.++++......+..+. ++.|+||++|++..+. ....+..||+.+|..+
T Consensus 393 I~A~G~~p~~~~l~~~~g-l~~~~~g~i~vd~~~~~-Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i 460 (471)
T PRK12810 393 LLAMGFTGPEAGLLAQFG-VELDERGRVAAPDNAYQ-TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAI 460 (471)
T ss_pred EECcCcCCCchhhccccC-cccCCCCCEEeCCCccc-CCCCCEEEccccCCCchhHHHHHHHHHHHHHHH
Confidence 99999999854 544322 33332221111101122 4589999999887543 3455677888877665
No 66
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.93 E-value=2.9e-24 Score=224.87 Aligned_cols=269 Identities=22% Similarity=0.282 Sum_probs=170.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||||||++|..|++.|++|+|||+.+.+||.+.+..
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gi------------------------------------ 370 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGI------------------------------------ 370 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecC------------------------------------
Confidence 47999999999999999999999999999999999999987620
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+.|....++.+...+.++++|++ +++++.|.. .++... ....||+||+|
T Consensus 371 ---------------p~~~l~~~~~~~~~~~~~~~Gv~--~~~~~~v~~---------~i~~~~-----~~~~~DavilA 419 (654)
T PRK12769 371 ---------------PAFKLDKSLLARRREIFSAMGIE--FELNCEVGK---------DISLES-----LLEDYDAVFVG 419 (654)
T ss_pred ---------------CCccCCHHHHHHHHHHHHHCCeE--EECCCEeCC---------cCCHHH-----HHhcCCEEEEe
Confidence 00111145566666777788887 888876621 011111 12369999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeee-----------cC---C-C-CCCCCCEEEEEecCCcHHHHHHHHhccCC-EEE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHN-----------YR---I-P-NPFQDQVVILIGHYASGLDIKRDLAGFAK-EVH 224 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~-----------~~---~-~-~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~ 224 (446)
||+ ..+..+.+||.+. .| ++.... +. . + ..+.+|+|+|||+|.+|+|+|..+.+.+. +|+
T Consensus 420 tGa-~~~~~l~i~g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt 496 (654)
T PRK12769 420 VGT-YRSMKAGLPNEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVT 496 (654)
T ss_pred CCC-CCCCCCCCCCCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence 996 3344567777653 22 111100 00 0 1 12578999999999999999998888875 799
Q ss_pred EEEecCCc------cccccCCCCC-CeeeccceeEEcc--CCc---EEe---------cC---------Cc--EEeecEE
Q 013303 225 IASRSVAD------ETHEKQPGYD-NMWLHSMVERANE--DGT---VVF---------RN---------GR--VVSADVI 272 (446)
Q Consensus 225 l~~r~~~~------~~~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~---------~d---------G~--~~~~D~v 272 (446)
+++|+... ..+..+.+.+ .+.....+.++.. ++. |.+ .+ |+ ++++|.|
T Consensus 497 ~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~V 576 (654)
T PRK12769 497 CAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAV 576 (654)
T ss_pred EeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEE
Confidence 99987541 1112222222 4444555666642 232 232 12 22 4889999
Q ss_pred EEecCccCCC-CCCCCCCeeeeCCCCcccccc--c-ccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcC
Q 013303 273 MHCTGYKYNY-PFLETNGIVTVDDNRVGPLYK--H-VFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSG 342 (446)
Q Consensus 273 i~atG~~~~~-~~l~~~g~i~~~~~~~~~l~~--~-~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g 342 (446)
|+|+|+.|+. .++...+ +.++.+....... + .+. ++.|+||++|+...+. ....+..||+.+|..+..
T Consensus 577 i~AiG~~p~~~~~~~~~g-l~~~~~G~i~vd~~~~~~~~-Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 577 IMAFGFNPHGMPWLESHG-VTVDKWGRIIADVESQYRYQ-TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred EECccCCCCccccccccC-CcCCCCCCEEeCCCcccCcc-cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999984 4544322 3333222111100 0 122 5589999999986543 346678899998887753
No 67
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.93 E-value=2.3e-24 Score=216.70 Aligned_cols=263 Identities=22% Similarity=0.291 Sum_probs=172.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+||||||+||++|..|++.|++|++||+.+.+||.+.+. +
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g-----------------------------------i- 184 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG-----------------------------------I- 184 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-----------------------------------C-
Confidence 4789999999999999999999999999999999999988752 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+.|....++.++..+.++++|+. ++++++|..- +...+ ....||.||+|
T Consensus 185 ---------------p~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~~---------~~~~~-----~~~~~D~vilA 233 (467)
T TIGR01318 185 ---------------PSFKLDKAVLSRRREIFTAMGIE--FHLNCEVGRD---------ISLDD-----LLEDYDAVFLG 233 (467)
T ss_pred ---------------ccccCCHHHHHHHHHHHHHCCCE--EECCCEeCCc---------cCHHH-----HHhcCCEEEEE
Confidence 00111146677777888888987 8888876320 11111 12469999999
Q ss_pred cCCCCCC-ccCCCCCCCCCCccEEEeee-----------cC-----CCCCCCCCEEEEEecCCcHHHHHHHHhccC-CEE
Q 013303 162 NGHFSVP-RLAQVPGIDSWPGKQMHSHN-----------YR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEV 223 (446)
Q Consensus 162 tG~~s~p-~~p~i~G~~~~~g~~~hs~~-----------~~-----~~~~~~~k~VvVVG~G~sg~eia~~l~~~~-~~V 223 (446)
|| +.+ ..+.+||.+. +| +.+..+ .. ....+.+++|+|||+|.+|+|.|..+.+.| ++|
T Consensus 234 tG--a~~~~~~~i~g~~~-~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~V 309 (467)
T TIGR01318 234 VG--TYRSMRGGLPGEDA-PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASV 309 (467)
T ss_pred eC--CCCCCcCCCCCcCC-CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeE
Confidence 99 544 3457888654 22 222110 00 011246899999999999999999998887 579
Q ss_pred EEEEecCCc------cccccCCCCC-CeeeccceeEEcc--CCc---EEec---------C---------C--cEEeecE
Q 013303 224 HIASRSVAD------ETHEKQPGYD-NMWLHSMVERANE--DGT---VVFR---------N---------G--RVVSADV 271 (446)
Q Consensus 224 ~l~~r~~~~------~~~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~~---------d---------G--~~~~~D~ 271 (446)
++++|++.. ..+..+.+.+ .+.....+.++.. ++. |.+. + | .++++|.
T Consensus 310 tvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~ 389 (467)
T TIGR01318 310 TCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADV 389 (467)
T ss_pred EEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCE
Confidence 999987541 1112222222 4455556666642 222 2221 1 2 2588999
Q ss_pred EEEecCccCCC-CCCCC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc-hhHHHHHHHHHHHHHc
Q 013303 272 IMHCTGYKYNY-PFLET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP-FPFFELQSKWIASVLS 341 (446)
Q Consensus 272 vi~atG~~~~~-~~l~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~-~~~~~~qa~~~a~~l~ 341 (446)
||+++|+.|+. +++.. .|.+.+|+ .|+..+. ++.|+||++|++..+.. ...+..||+.+|.++.
T Consensus 390 Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~-----~~~~~~~-T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 390 VIMAFGFQPHAMPWLAGHGITLDSWGRIITGD-----VSYLPYQ-TTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred EEECCcCCCCccccccccCccCCCCCCEEeCC-----ccccCcc-CCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999984 45433 23344442 1112233 34899999998865433 3567889999988775
No 68
>PRK13984 putative oxidoreductase; Provisional
Probab=99.92 E-value=2.7e-24 Score=223.83 Aligned_cols=260 Identities=23% Similarity=0.302 Sum_probs=168.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+.-
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i------------------------------------ 326 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGI------------------------------------ 326 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecC------------------------------------
Confidence 46899999999999999999999999999999999999877520
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+.+...+++.+...+.++++|+. +++++.|..- +..+. ....||+||+|
T Consensus 327 ---------------~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~~---------~~~~~-----~~~~yD~vilA 375 (604)
T PRK13984 327 ---------------PSYRLPDEALDKDIAFIEALGVK--IHLNTRVGKD---------IPLEE-----LREKHDAVFLS 375 (604)
T ss_pred ---------------CcccCCHHHHHHHHHHHHHCCcE--EECCCEeCCc---------CCHHH-----HHhcCCEEEEE
Confidence 00011134455555667778877 8888777320 01111 13469999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeecC---------CC-CCCCCCEEEEEecCCcHHHHHHHHhccC------CEEEE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR---------IP-NPFQDQVVILIGHYASGLDIKRDLAGFA------KEVHI 225 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~---------~~-~~~~~k~VvVVG~G~sg~eia~~l~~~~------~~V~l 225 (446)
||. ..|+.+++||.+. .+ +.+..++. .. ....+++|+|||||.+|+|+|..+++.+ .+|++
T Consensus 376 tGa-~~~r~l~i~G~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v 452 (604)
T PRK13984 376 TGF-TLGRSTRIPGTDH-PD-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKV 452 (604)
T ss_pred cCc-CCCccCCCCCcCC-cC-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEE
Confidence 994 3467888999753 12 22222211 11 1234799999999999999999998774 36888
Q ss_pred EEec-CCc------cccccCCCCC-CeeeccceeEEcc-CCc---EEec-------------------CCcEEeecEEEE
Q 013303 226 ASRS-VAD------ETHEKQPGYD-NMWLHSMVERANE-DGT---VVFR-------------------NGRVVSADVIMH 274 (446)
Q Consensus 226 ~~r~-~~~------~~~~~~~~~~-~v~~~~~v~~i~~-~~~---v~~~-------------------dG~~~~~D~vi~ 274 (446)
+... ... ..+..+.+.+ .+.....+.++.. ++. |.+. ++.++++|.||+
T Consensus 453 ~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~ 532 (604)
T PRK13984 453 TSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVE 532 (604)
T ss_pred eccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEE
Confidence 7432 110 0111111111 3333334444432 121 2221 123589999999
Q ss_pred ecCccCCCCCCCC---------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHc
Q 013303 275 CTGYKYNYPFLET---------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 275 atG~~~~~~~l~~---------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~ 341 (446)
|+|+.|+..+|.. .|.|.+|++.+ ++.|+||++|++..+.....+..+|+.+|..+.
T Consensus 533 aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~----------Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 533 AIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQ----------TSIPWLFAGGDIVHGPDIIHGVADGYWAAEGID 598 (604)
T ss_pred eeCCCCChhhhhhhhccCccccCCeEEeCCCCc----------cCCCCEEEecCcCCchHHHHHHHHHHHHHHHHH
Confidence 9999999877642 24455665544 569999999998766555667788888887764
No 69
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.8e-24 Score=194.07 Aligned_cols=260 Identities=21% Similarity=0.239 Sum_probs=198.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+||||||||.+||.+.+|.|++.-++- +++||+-..+-..+ .|-
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IE------------------------------NfI 258 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIE------------------------------NFI 258 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchh------------------------------hee
Confidence 4799999999999999999999999876653 35888876542111 011
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
. ..+..+.++...|++.+++|+++ +.--.+.+.+.+... +-..|++.++. .+.++.||
T Consensus 259 s--------------v~~teGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGa----vLkaktvI 318 (520)
T COG3634 259 S--------------VPETEGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGA----VLKARTVI 318 (520)
T ss_pred c--------------cccccchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCc----eeccceEE
Confidence 1 12234578899999999999988 666667777777532 56788888876 78999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---cccc-
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DETH- 235 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---~~~~- 235 (446)
+||| .+-+-..+||.++|..+.+..|..++..-|+||+|.|||||+||+|.|.+|+.....||++.-.+. +..+
T Consensus 319 lstG--ArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq 396 (520)
T COG3634 319 LATG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQ 396 (520)
T ss_pred EecC--cchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHH
Confidence 9999 777778899999998888888888999999999999999999999999999999999999987765 1111
Q ss_pred ccCCCCC--CeeeccceeEEccCCc----EEec---CCcE--EeecEEEEecCccCCCCCCC------CCCeeeeCCCCc
Q 013303 236 EKQPGYD--NMWLHSMVERANEDGT----VVFR---NGRV--VSADVIMHCTGYKYNYPFLE------TNGIVTVDDNRV 298 (446)
Q Consensus 236 ~~~~~~~--~v~~~~~v~~i~~~~~----v~~~---dG~~--~~~D~vi~atG~~~~~~~l~------~~g~i~~~~~~~ 298 (446)
+++.... .+..+..-+++.+++. +... +|+. ++-+-|++-.|..||+.||. ..|-|.+|....
T Consensus 397 ~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~ 476 (520)
T COG3634 397 DKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGE 476 (520)
T ss_pred HHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCC
Confidence 2233333 4555667778877743 3443 3443 66788999999999999974 456677777766
Q ss_pred ccccccccCCCCCCCeEEecCCCccCc
Q 013303 299 GPLYKHVFPPVLAPGLSFVGIPQKVIP 325 (446)
Q Consensus 299 ~~l~~~~~~~~~~p~l~~iG~~~~~~~ 325 (446)
++.|++|+.|++...+.
T Consensus 477 ----------TsvpGvFAAGD~T~~~y 493 (520)
T COG3634 477 ----------TNVPGVFAAGDCTTVPY 493 (520)
T ss_pred ----------cCCCceeecCcccCCcc
Confidence 67999999998875543
No 70
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.92 E-value=5.9e-26 Score=217.82 Aligned_cols=216 Identities=22% Similarity=0.210 Sum_probs=132.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
.+|+++||.||++|+.|..|.+.+ .++..||+.+ .-.|+..-- .|+..+..+.+-+-.....|..-++|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~--~f~Wh~gml--------l~~~~~q~~fl~Dlvt~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP--SFSWHPGML--------LPGARMQVSFLKDLVTLRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S--S--TTGGG----------SS-B-SS-TTSSSSTTT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC--CCCcCCccC--------CCCCccccccccccCcCcCCCCcccH
Confidence 469999999999999999999876 8999999866 345654210 01111111222222223344444444
Q ss_pred CCCCCCcCC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC---ceEEEEEeCCCceEEEEEc
Q 013303 81 QAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN---KWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 81 ~d~~~~~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~---~~~v~~~~~~~~~~~~~~d 156 (446)
..|-..... .+.......+|++.++.+|+++.+++++.. ++++++|++|++..++ .|+|++.+.++...++.++
T Consensus 72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar 149 (341)
T PF13434_consen 72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR 149 (341)
T ss_dssp HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES
T ss_pred HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC
Confidence 332111100 000001346789999999999999999855 9999999999988733 4999998766667799999
Q ss_pred EEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCC--CCCCCCEEEEEecCCcHHHHHHHHhccCC--EEEEEEecCC
Q 013303 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAK--EVHIASRSVA 231 (446)
Q Consensus 157 ~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~--~~~~~k~VvVVG~G~sg~eia~~l~~~~~--~V~l~~r~~~ 231 (446)
.||+||| ..|.+|..-........++|+.+|... ....+++|+|||||.||.|++..|.+.+. +|+|+.|++.
T Consensus 150 ~vVla~G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 150 NVVLATG--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp EEEE------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred eEEECcC--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 9999999 889998643321123679999987543 25678999999999999999999998764 8999999875
No 71
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.92 E-value=1.2e-23 Score=228.40 Aligned_cols=279 Identities=16% Similarity=0.166 Sum_probs=184.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.+||+|||||||||+||..|++.|++|+|||+.+.+||++.....
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~----------------------------------- 207 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE----------------------------------- 207 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc-----------------------------------
Confidence 368999999999999999999999999999999999998865210
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEE-E-------eC-C-Cce
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKS-R-------KK-D-DVV 150 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~-~-------~~-~-~~~ 150 (446)
..+ . .+..++.+.+.+.++.+ ++. ++.+++|..+.... ....+.. . .+ . +..
T Consensus 208 ~~~-------------g-~~~~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~-~v~~v~~~~~~~~~~~~~~~~~~~ 270 (985)
T TIGR01372 208 TID-------------G-KPAADWAAATVAELTAMPEVT--LLPRTTAFGYYDHN-TVGALERVTDHLDAPPKGVPRERL 270 (985)
T ss_pred ccC-------------C-ccHHHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCC-eEEEEEEeeeccccccCCccccce
Confidence 000 0 11133333333334334 365 78889998875321 0011110 0 00 0 112
Q ss_pred EEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEe---eec-CCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEE
Q 013303 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHS---HNY-RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHI 225 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs---~~~-~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l 225 (446)
.++.+|.|||||| +.++.|++||.+. +| ++.. ..+ .....+.+++|+|||+|.+|+|+|..|++.|. .|++
T Consensus 271 ~~i~a~~VILATG--a~~r~~pipG~~~-pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~v 346 (985)
T TIGR01372 271 WRIRAKRVVLATG--AHERPLVFANNDR-PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAI 346 (985)
T ss_pred EEEEcCEEEEcCC--CCCcCCCCCCCCC-CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence 3689999999999 7889899999754 33 2221 112 12223568999999999999999999999994 5788
Q ss_pred EEecCC--ccccccCCCCC-CeeeccceeEEccCCc---EEec----CCcEEeecEEEEecCccCCCCCCCCCC-eeeeC
Q 013303 226 ASRSVA--DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR----NGRVVSADVIMHCTGYKYNYPFLETNG-IVTVD 294 (446)
Q Consensus 226 ~~r~~~--~~~~~~~~~~~-~v~~~~~v~~i~~~~~---v~~~----dG~~~~~D~vi~atG~~~~~~~l~~~g-~i~~~ 294 (446)
+.+.+. ......+.+.+ .+..+..|.++.+++. |.+. +++++++|.|++++|+.|+..++...| .+..+
T Consensus 347 v~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~ 426 (985)
T TIGR01372 347 IDARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWD 426 (985)
T ss_pred EccCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeec
Confidence 776543 11222232222 5556677888876543 5565 456789999999999999998875543 24444
Q ss_pred CCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHc
Q 013303 295 DNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLS 341 (446)
Q Consensus 295 ~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~ 341 (446)
+... ...+.++.|+||++|++........+..+++.++..++
T Consensus 427 ~~~~-----~~~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 427 AAIA-----AFLPGDAVQGCILAGAANGLFGLAAALADGAAAGAAAA 468 (985)
T ss_pred cccC-----ceecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHHH
Confidence 3221 11222447999999988766667778888888887764
No 72
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.1e-24 Score=191.61 Aligned_cols=311 Identities=19% Similarity=0.248 Sum_probs=194.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEee---CC-----CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---GE-----QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~---~~-----~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~ 73 (446)
.+|++|||||.+||+||++++..|.+|.++|- .+ .+||+|.+. ||+|.+.+-..++.-.-....
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNV--------GCIPKKLMHQAallG~al~da 90 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNV--------GCIPKKLMHQAALLGEALHDA 90 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeec--------ccccHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999983 21 246777765 899876443333221111111
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCe-EEEEEEEcCC--CceEEEEEeCCCce
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHT-EVLNARLVES--NKWKVKSRKKDDVV 150 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~-~V~~v~~~~~--~~~~v~~~~~~~~~ 150 (446)
. .|-|.-. +...-+.+..+.+-+++.+...+---++.++. +|.-++.-.. +..++...+..++.
T Consensus 91 ~-------kyGW~~~------e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~ 157 (503)
T KOG4716|consen 91 R-------KYGWNVD------EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKE 157 (503)
T ss_pred H-------hhCCCCc------cccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCce
Confidence 1 1223221 12334556777777777777655432233322 2333321111 45667666666667
Q ss_pred EEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..++++.+||||| .+|+.|+|||..++ .+.|.+....+ +.+.+-+|||+|..|+|+|..|+..|-.|++..|+-
T Consensus 158 ~~~ta~~fvIatG--~RPrYp~IpG~~Ey---~ITSDDlFsl~-~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI 231 (503)
T KOG4716|consen 158 RFLTAENFVIATG--LRPRYPDIPGAKEY---GITSDDLFSLP-YEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI 231 (503)
T ss_pred EEeecceEEEEec--CCCCCCCCCCceee---eeccccccccc-CCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe
Confidence 7899999999999 89999999997663 45666554443 344567789999999999999999999999999987
Q ss_pred C----cccc-----ccCCCCC-Ceeec---cceeEEccCCc--EEec---CCc--EEeecEEEEecCccCCCCCCC--CC
Q 013303 231 A----DETH-----EKQPGYD-NMWLH---SMVERANEDGT--VVFR---NGR--VVSADVIMHCTGYKYNYPFLE--TN 288 (446)
Q Consensus 231 ~----~~~~-----~~~~~~~-~v~~~---~~v~~i~~~~~--v~~~---dG~--~~~~D~vi~atG~~~~~~~l~--~~ 288 (446)
. +..+ +.+..++ .+..+ .+|+.+.. ++ |... .++ +.++|.|++|.|+.+...-|+ .-
T Consensus 232 ~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~-g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~ 310 (503)
T KOG4716|consen 232 LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD-GKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNA 310 (503)
T ss_pred ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccC-CcEEEEeecccccccccchhhhhhhhhccccchhhcCCCcc
Confidence 5 1111 1111222 22222 24555533 33 2222 122 245999999999999876543 22
Q ss_pred CeeeeCCCCcccccccccCCCCCCCeEEecCCC--ccCchhHHHHHHHHHHHHHcC
Q 013303 289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ--KVIPFPFFELQSKWIASVLSG 342 (446)
Q Consensus 289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~--~~~~~~~~~~qa~~~a~~l~g 342 (446)
| +.+|+..-. .--.-+..++.|.+|++|+.. ..-..|++-..+|.+|+.|-+
T Consensus 311 G-Vk~n~ks~K-I~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 311 G-VKTNEKSGK-IPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred c-eeecccCCc-cccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence 3 444332211 111112225699999999875 334458888888988877643
No 73
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.91 E-value=2.3e-23 Score=217.12 Aligned_cols=264 Identities=20% Similarity=0.258 Sum_probs=170.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+||||||+||++|..|++.|++|+|||+.+.+||.|.+. .+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------ip-------------------------- 354 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------IP-------------------------- 354 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------CC--------------------------
Confidence 5799999999999999999999999999999999999999873 11
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.|.+ ..++.+...+.++.+|++ ++++++|.. .+++.+ ....||+||+|
T Consensus 355 ~~~l----------------~~~~~~~~~~~~~~~Gv~--~~~~~~v~~---------~~~~~~-----l~~~~DaV~la 402 (639)
T PRK12809 355 PFKL----------------DKTVLSQRREIFTAMGID--FHLNCEIGR---------DITFSD-----LTSEYDAVFIG 402 (639)
T ss_pred cccC----------------CHHHHHHHHHHHHHCCeE--EEcCCccCC---------cCCHHH-----HHhcCCEEEEe
Confidence 0111 145666666778888887 888876631 011111 12469999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEee--------e---cCC-----CCCCCCCEEEEEecCCcHHHHHHHHhccC-CEEE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSH--------N---YRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVH 224 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~--------~---~~~-----~~~~~~k~VvVVG~G~sg~eia~~l~~~~-~~V~ 224 (446)
||++ .+..+.+||.+. .| +++.. + ... .....+|+|+|||+|.+|+|.|..+.+.| ++|+
T Consensus 403 tGa~-~~~~~~i~g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt 479 (639)
T PRK12809 403 VGTY-GMMRADLPHEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVT 479 (639)
T ss_pred CCCC-CCCCCCCCCCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence 9963 345567888653 23 22210 0 111 12346899999999999999999888777 5899
Q ss_pred EEEecCCc------cccccCCCC-CCeeeccceeEEcc--CCcE---Ee---c------C---------C--cEEeecEE
Q 013303 225 IASRSVAD------ETHEKQPGY-DNMWLHSMVERANE--DGTV---VF---R------N---------G--RVVSADVI 272 (446)
Q Consensus 225 l~~r~~~~------~~~~~~~~~-~~v~~~~~v~~i~~--~~~v---~~---~------d---------G--~~~~~D~v 272 (446)
++.|+... ..+....+. ..+.....+.++.. ++.| .+ . + | .++++|.|
T Consensus 480 ~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~V 559 (639)
T PRK12809 480 CAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVL 559 (639)
T ss_pred EeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEE
Confidence 99987541 111111111 24455555666642 2222 11 1 1 2 25789999
Q ss_pred EEecCccCCC-CCCCCC-------CeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc-hhHHHHHHHHHHHHHc
Q 013303 273 MHCTGYKYNY-PFLETN-------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP-FPFFELQSKWIASVLS 341 (446)
Q Consensus 273 i~atG~~~~~-~~l~~~-------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~-~~~~~~qa~~~a~~l~ 341 (446)
|+|+|+.|+. .++... |.+.+|+.. ...+. ++.|+||++|++..+.. ...+..|++.+|+.+.
T Consensus 560 i~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~-----~~~~~-Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~ 631 (639)
T PRK12809 560 IMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVG-----YLPTQ-THLKKVFAGGDAVHGADLVVTAMAAGRQAARDML 631 (639)
T ss_pred EECcCCCCCccccccccCcccCCCCCEEeCCCc-----ccCcc-cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999964 454432 334443211 11123 45899999999865433 3567788888887765
No 74
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.91 E-value=3.1e-23 Score=207.51 Aligned_cols=214 Identities=20% Similarity=0.256 Sum_probs=154.3
Q ss_pred HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE--EcEEEEccCCCCCCccCCCCCCCCCCccEEEee
Q 013303 110 QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET--FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSH 187 (446)
Q Consensus 110 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~--~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~ 187 (446)
.++.+++++. ++++++|+.|++.+ ++|.+.+..+ ..++. ||+|||||| +.|+.|.+||++. ..+.+..
T Consensus 51 ~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~~~~~-~~~~~~~yd~lIiATG--~~p~~~~i~G~~~--~~v~~~~ 120 (427)
T TIGR03385 51 EVFIKKRGID--VKTNHEVIEVNDER---QTVVVRNNKT-NETYEESYDYLILSPG--ASPIVPNIEGINL--DIVFTLR 120 (427)
T ss_pred HHHHHhcCCe--EEecCEEEEEECCC---CEEEEEECCC-CCEEecCCCEEEECCC--CCCCCCCCCCcCC--CCEEEEC
Confidence 4556778887 88899999998754 5555554321 12455 999999999 8999999999752 1233322
Q ss_pred ecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--c----c-----cccCCCC-CCeeecc
Q 013303 188 NYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--E----T-----HEKQPGY-DNMWLHS 248 (446)
Q Consensus 188 ~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--~----~-----~~~~~~~-~~v~~~~ 248 (446)
...+. ..+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.. . . ...+.+. -++..+.
T Consensus 121 ~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~ 200 (427)
T TIGR03385 121 NLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNE 200 (427)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCC
Confidence 21111 1245789999999999999999999999999999987641 0 0 0111222 2555667
Q ss_pred ceeEEccCCc-EEecCCcEEeecEEEEecCccCCCCCCC-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCC
Q 013303 249 MVERANEDGT-VVFRNGRVVSADVIMHCTGYKYNYPFLE-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIP 320 (446)
Q Consensus 249 ~v~~i~~~~~-v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~ 320 (446)
.|.++..++. +.+.+|+++++|.||+|+|++|+.+++. +.|.|.+|+..+ ++.|+||++|++
T Consensus 201 ~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~----------t~~~~Vya~GD~ 270 (427)
T TIGR03385 201 EVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQ----------TSVPNIYAAGDV 270 (427)
T ss_pred EEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcE----------eCCCCEEEeeee
Confidence 8888876655 3778999999999999999999987754 345566666554 458999999987
Q ss_pred Ccc-----------CchhHHHHHHHHHHHHHcCC
Q 013303 321 QKV-----------IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 321 ~~~-----------~~~~~~~~qa~~~a~~l~g~ 343 (446)
... ...+.+..||+++|++|.|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 271 AESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred EEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 632 23567889999999999985
No 75
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.91 E-value=1.4e-22 Score=204.48 Aligned_cols=267 Identities=22% Similarity=0.308 Sum_probs=166.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||||++|+++|..|++.|++|+|||+.+.+||...+. +
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g-----------------------------------i-- 186 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG-----------------------------------I-- 186 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc-----------------------------------C--
Confidence 699999999999999999999999999999999999887652 0
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
+.+....++.....+.++.+|++ +++++.|.. + ++. + .....||.||+||
T Consensus 187 --------------p~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~-~--------~~~-~----~~~~~~d~VilAt 236 (485)
T TIGR01317 187 --------------PNMKLDKAIVDRRIDLLSAEGID--FVTNTEIGV-D--------ISA-D----ELKEQFDAVVLAG 236 (485)
T ss_pred --------------CCccCCHHHHHHHHHHHHhCCCE--EECCCEeCC-c--------cCH-H----HHHhhCCEEEEcc
Confidence 01111134555555667778887 788877631 1 000 0 0135699999999
Q ss_pred CCCCCCccCCCCCCCCCCccEEEeeec--------C-------CCCCCCCCEEEEEecCCcHHHHHHHHhccC-CEEEEE
Q 013303 163 GHFSVPRLAQVPGIDSWPGKQMHSHNY--------R-------IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIA 226 (446)
Q Consensus 163 G~~s~p~~p~i~G~~~~~g~~~hs~~~--------~-------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~-~~V~l~ 226 (446)
|. ..|..+++||.+. .| +.....+ . ....+.+|+|+|||+|.+|+|+|..+.+.+ ++|+++
T Consensus 237 Ga-~~~~~l~i~G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv 313 (485)
T TIGR01317 237 GA-TKPRDLPIPGREL-KG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQF 313 (485)
T ss_pred CC-CCCCcCCCCCcCC-CC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 94 2378888999753 22 1111110 0 011257899999999999999987777665 689999
Q ss_pred EecCCcc-------c-------------cccCCC-CC--CeeeccceeEEccC--Cc---EEe--------cCC------
Q 013303 227 SRSVADE-------T-------------HEKQPG-YD--NMWLHSMVERANED--GT---VVF--------RNG------ 264 (446)
Q Consensus 227 ~r~~~~~-------~-------------~~~~~~-~~--~v~~~~~v~~i~~~--~~---v~~--------~dG------ 264 (446)
.+.+... . ..+... .+ .+.....+.++..+ +. +.+ ++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~ 393 (485)
T TIGR01317 314 EIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVE 393 (485)
T ss_pred EecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCcccee
Confidence 8765310 0 000000 01 11234445555432 22 221 133
Q ss_pred -----cEEeecEEEEecCcc-CCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHH
Q 013303 265 -----RVVSADVIMHCTGYK-YNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIA 337 (446)
Q Consensus 265 -----~~~~~D~vi~atG~~-~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a 337 (446)
.++++|.||+|+|.. |+.+++...| +..+++.........+. ++.|+||++|++..+. ....+..|++.+|
T Consensus 394 ~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~g-l~~~~~G~i~~~~~~~~-Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA 471 (485)
T TIGR01317 394 IPGSEEVFEADLVLLAMGFVGPEQILLDDFG-VKKTRRGNISAGYDDYS-TSIPGVFAAGDCRRGQSLIVWAINEGRKAA 471 (485)
T ss_pred cCCceEEEECCEEEEccCcCCCccccccccC-cccCCCCCEEecCCCce-ECCCCEEEeeccCCCcHHHHHHHHHHHHHH
Confidence 258899999999996 8888765443 33232222111112223 4589999999886433 3445677888777
Q ss_pred HHHc
Q 013303 338 SVLS 341 (446)
Q Consensus 338 ~~l~ 341 (446)
..+.
T Consensus 472 ~~i~ 475 (485)
T TIGR01317 472 AAVD 475 (485)
T ss_pred HHHH
Confidence 6653
No 76
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.90 E-value=1.5e-22 Score=201.46 Aligned_cols=160 Identities=21% Similarity=0.275 Sum_probs=112.1
Q ss_pred CCeEEEECcChHHHHHHHHHHH--CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
.++|+|||||||||+||..|++ .|++|+|||+.+.+||.+++.-
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv---------------------------------- 71 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV---------------------------------- 71 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc----------------------------------
Confidence 5789999999999999999987 6999999999999999888630
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
.+.++....+...+..+.+..++. ++.|..|- ..++.++. ...||+||
T Consensus 72 ----------------aP~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg---------~dvtl~~L-----~~~yDaVI 119 (491)
T PLN02852 72 ----------------APDHPETKNVTNQFSRVATDDRVS--FFGNVTLG---------RDVSLSEL-----RDLYHVVV 119 (491)
T ss_pred ----------------CCCcchhHHHHHHHHHHHHHCCeE--EEcCEEEC---------ccccHHHH-----hhhCCEEE
Confidence 112223356667777777766655 55554441 11222221 24699999
Q ss_pred EccCCCCC-CccCCCCCCCCCCccEEEeeec----C------CC--CCCCCCEEEEEecCCcHHHHHHHHhcc-------
Q 013303 160 VCNGHFSV-PRLAQVPGIDSWPGKQMHSHNY----R------IP--NPFQDQVVILIGHYASGLDIKRDLAGF------- 219 (446)
Q Consensus 160 vAtG~~s~-p~~p~i~G~~~~~g~~~hs~~~----~------~~--~~~~~k~VvVVG~G~sg~eia~~l~~~------- 219 (446)
+||| +. ++.+.+||.+. .| ++...++ . .. ....+++|+|||+|++|+|+|..|++.
T Consensus 120 lAtG--a~~~~~l~IpG~d~-~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~t 195 (491)
T PLN02852 120 LAYG--AESDRRLGIPGEDL-PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELAST 195 (491)
T ss_pred EecC--CCCCCCCCCCCCCC-CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccc
Confidence 9999 44 46778898653 22 2332222 1 00 123689999999999999999998764
Q ss_pred --------------CCEEEEEEecCC
Q 013303 220 --------------AKEVHIASRSVA 231 (446)
Q Consensus 220 --------------~~~V~l~~r~~~ 231 (446)
.++|+++.|+.+
T Consensus 196 di~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 196 DIAEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred cccHHHHHHHhhCCCCEEEEEEcCCh
Confidence 357999999885
No 77
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.90 E-value=1.3e-22 Score=209.14 Aligned_cols=259 Identities=28% Similarity=0.349 Sum_probs=168.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+||||||+||++|..|++.|++|++||+.+.+||.+.+. ++
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 181 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG-----------------------------------IP 181 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence 4789999999999999999999999999999999999988763 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEE-EEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V-~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
.|.+ ..++.+.-.+.+.++|+. +.+++.+ ..+.... ....||+||+
T Consensus 182 ~~~~----------------~~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~~---------------~~~~~D~Vi~ 228 (564)
T PRK12771 182 AYRL----------------PREVLDAEIQRILDLGVE--VRLGVRVGEDITLEQ---------------LEGEFDAVFV 228 (564)
T ss_pred CccC----------------CHHHHHHHHHHHHHCCCE--EEeCCEECCcCCHHH---------------HHhhCCEEEE
Confidence 1111 134455555567778876 7777665 3321110 0134899999
Q ss_pred ccCCCCCCccCCCCCCCCCCccEEEeeecC-----CCCCCCCCEEEEEecCCcHHHHHHHHhccC-CEEEEEEecCCcc-
Q 013303 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVADE- 233 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~-----~~~~~~~k~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~~~- 233 (446)
|||.. .+..+.++|.+. .| +++...+. ......+++|+|||+|.+|+|.+..+.+.+ ++|++++|.+..+
T Consensus 229 AtG~~-~~~~~~i~g~~~-~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~ 305 (564)
T PRK12771 229 AIGAQ-LGKRLPIPGEDA-AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDM 305 (564)
T ss_pred eeCCC-CCCcCCCCCCcc-CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccC
Confidence 99952 234446777542 22 22221111 113456899999999999999999888887 7899999876411
Q ss_pred -----ccccCCC-CCCeeeccceeEEccCC-c--------EEe----c-------CC--cEEeecEEEEecCccCCCCCC
Q 013303 234 -----THEKQPG-YDNMWLHSMVERANEDG-T--------VVF----R-------NG--RVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 234 -----~~~~~~~-~~~v~~~~~v~~i~~~~-~--------v~~----~-------dG--~~~~~D~vi~atG~~~~~~~l 285 (446)
.+....+ ..++.....+.++..++ . +.+ . +| .++++|.||+|+|..|+.+++
T Consensus 306 ~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~ 385 (564)
T PRK12771 306 PAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL 385 (564)
T ss_pred CCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh
Confidence 1111111 12444455666665332 1 111 1 23 358899999999999998887
Q ss_pred CC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHH
Q 013303 286 ET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVL 340 (446)
Q Consensus 286 ~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l 340 (446)
.. .|.+.+|+. .+. ++.|+||++|++..+ .....+..||+.+|..+
T Consensus 386 ~~~~gl~~~~G~i~vd~~--------~~~-ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i 439 (564)
T PRK12771 386 ESVPGVEVGRGVVQVDPN--------FMM-TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNI 439 (564)
T ss_pred hhccCcccCCCCEEeCCC--------Ccc-CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHH
Confidence 63 234444442 222 458999999988653 34456677888877765
No 78
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=193.28 Aligned_cols=244 Identities=21% Similarity=0.316 Sum_probs=174.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
.+.++|||||++|..|+.++++.|. +++++-++..+ .+. . ..+|+....
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----pyd-----------------------r--~~Ls~~~~~ 124 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----PYD-----------------------R--ARLSKFLLT 124 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----ccc-----------------------c--hhcccceee
Confidence 3679999999999999999999985 67777654322 111 0 000000000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
..+.+.....++-+..+++ +.+++.|+.++... .+|...++. ++.|++++
T Consensus 125 ---------------------~~~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~~~---K~l~~~~Ge----~~kys~Li 174 (478)
T KOG1336|consen 125 ---------------------VGEGLAKRTPEFYKEKGIE--LILGTSVVKADLAS---KTLVLGNGE----TLKYSKLI 174 (478)
T ss_pred ---------------------ccccccccChhhHhhcCce--EEEcceeEEeeccc---cEEEeCCCc----eeecceEE
Confidence 0011111223355667887 89999999998754 778887775 89999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC--------CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP--------FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~--------~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
|||| +.++.|++||.+. . ..+.+++.++ -.++.|+|+|+|..|+|+|.+|...+.+||++++.+.
T Consensus 175 lATG--s~~~~l~~pG~~~---~--nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~ 247 (478)
T KOG1336|consen 175 IATG--SSAKTLDIPGVEL---K--NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW 247 (478)
T ss_pred Eeec--CccccCCCCCccc---c--ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCcc
Confidence 9999 7999999999873 2 2233444332 2367899999999999999999999999999999875
Q ss_pred c----------cccccC-CCC-CCeeeccceeEEccCC--c---EEecCCcEEeecEEEEecCccCCCCCCC------CC
Q 013303 232 D----------ETHEKQ-PGY-DNMWLHSMVERANEDG--T---VVFRNGRVVSADVIMHCTGYKYNYPFLE------TN 288 (446)
Q Consensus 232 ~----------~~~~~~-~~~-~~v~~~~~v~~i~~~~--~---v~~~dG~~~~~D~vi~atG~~~~~~~l~------~~ 288 (446)
. ..+..+ .+. .++...+.+.+++++. . |.+.||+++++|.||+++|-+|+.+|+. ..
T Consensus 248 ~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~ 327 (478)
T KOG1336|consen 248 LLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSK 327 (478)
T ss_pred chhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceeccc
Confidence 1 011111 112 2566677888876543 2 7789999999999999999999999975 45
Q ss_pred CeeeeCCCCcccccccccCCCCCCCeEEecCCC
Q 013303 289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ 321 (446)
Q Consensus 289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~ 321 (446)
|.|.+|+..+ ++.|++|++|++.
T Consensus 328 G~i~V~~~f~----------t~~~~VyAiGDva 350 (478)
T KOG1336|consen 328 GGIKVDEFFQ----------TSVPNVYAIGDVA 350 (478)
T ss_pred CCEeehhcee----------eccCCccccccee
Confidence 6788887776 5599999999664
No 79
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.87 E-value=1e-21 Score=183.48 Aligned_cols=275 Identities=17% Similarity=0.153 Sum_probs=181.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+++|+|+|.|.+|.+.++.|-..-++|+|+...+..-=+|.. ++.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL-----------------------pS~------------ 99 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL-----------------------PST------------ 99 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc-----------------------CCc------------
Confidence 689999999999999999998888999999987644222211 000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC----CceEEEEEcE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD----DVVEEETFDA 157 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~----~~~~~~~~d~ 157 (446)
+..-...+.+.+-+...+.+-+-.. -.+..+...|++.. .+|+++... ..+..+.||+
T Consensus 100 --------------~vGTve~rSIvEPIr~i~r~k~~~~-~y~eAec~~iDp~~---k~V~~~s~t~~~~~~e~~i~YDy 161 (491)
T KOG2495|consen 100 --------------TVGTVELRSIVEPIRAIARKKNGEV-KYLEAECTKIDPDN---KKVHCRSLTADSSDKEFVIGYDY 161 (491)
T ss_pred --------------cccceeehhhhhhHHHHhhccCCCc-eEEecccEeecccc---cEEEEeeeccCCCcceeeecccE
Confidence 0111122456667777776654432 23456667777654 555554432 2346899999
Q ss_pred EEEccCCCCCCccCCCCCCCCC---CccEEEeeecC----------------CCCCCCCCEEEEEecCCcHHHHHHHHhc
Q 013303 158 VVVCNGHFSVPRLAQVPGIDSW---PGKQMHSHNYR----------------IPNPFQDQVVILIGHYASGLDIKRDLAG 218 (446)
Q Consensus 158 VVvAtG~~s~p~~p~i~G~~~~---~g~~~hs~~~~----------------~~~~~~~k~VvVVG~G~sg~eia~~l~~ 218 (446)
||+|+| +.++.+.+||..+. ...+-+....| +++.-+=-++||||||++|+|.|.+|+.
T Consensus 162 LViA~G--A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~D 239 (491)
T KOG2495|consen 162 LVIAVG--AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELAD 239 (491)
T ss_pred EEEecc--CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHH
Confidence 999999 89999999997652 22222222211 1111122479999999999999999985
Q ss_pred c--------------CCEEEEEEecCC-----cccc----ccCCCC--CCeeeccceeEEccCCcEEecC--C--cEEee
Q 013303 219 F--------------AKEVHIASRSVA-----DETH----EKQPGY--DNMWLHSMVERANEDGTVVFRN--G--RVVSA 269 (446)
Q Consensus 219 ~--------------~~~V~l~~r~~~-----~~~~----~~~~~~--~~v~~~~~v~~i~~~~~v~~~d--G--~~~~~ 269 (446)
. -.+||++.-.+. +..+ ...... ..+...+.|+.++++. ++..+ | +++++
T Consensus 240 fi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~-I~~~~~~g~~~~iPY 318 (491)
T KOG2495|consen 240 FIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT-IHAKTKDGEIEEIPY 318 (491)
T ss_pred HHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE-EEEEcCCCceeeecc
Confidence 3 126888876663 1111 111111 2556667888887654 65544 4 56889
Q ss_pred cEEEEecCccCCCCC-------CCCCC--eeeeCCCCcccccccccCCCCCCCeEEecCCCccC----chhHHHHHHHHH
Q 013303 270 DVIMHCTGYKYNYPF-------LETNG--IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI----PFPFFELQSKWI 336 (446)
Q Consensus 270 D~vi~atG~~~~~~~-------l~~~g--~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~----~~~~~~~qa~~~ 336 (446)
-.++|+||..+. |+ +++.+ .+.+|++++. .+.+|||+||+|.... +..+++.||.++
T Consensus 319 G~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV---------~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yL 388 (491)
T KOG2495|consen 319 GLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRV---------KGVKNVFAIGDCADQRGLKPTAQVAEQQGAYL 388 (491)
T ss_pred eEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeec---------cCcCceEEeccccccccCccHHHHHHHHHHHH
Confidence 999999999976 33 34555 5788888774 3478999999987322 446889999999
Q ss_pred HHHHcC
Q 013303 337 ASVLSG 342 (446)
Q Consensus 337 a~~l~g 342 (446)
|+++.-
T Consensus 389 Ak~fn~ 394 (491)
T KOG2495|consen 389 AKNFNK 394 (491)
T ss_pred HHHHHH
Confidence 999863
No 80
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.86 E-value=5e-21 Score=190.43 Aligned_cols=273 Identities=19% Similarity=0.245 Sum_probs=192.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
+.+++|||.|++|..+..++++. -+++++|-..+++ +|+ +.+.+..
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~----nY~----------------------Ri~Ls~v----- 51 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP----NYN----------------------RILLSSV----- 51 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc----ccc----------------------ceeeccc-----
Confidence 46899999999999999999983 3689999876644 121 0000000
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
+ +.--+.+++.-.-.++.++.++. ++.+.+|+.|++.. .+|+++.+. ++.||.|
T Consensus 52 ----l-------------~~~~~~edi~l~~~dwy~~~~i~--L~~~~~v~~idr~~---k~V~t~~g~----~~~YDkL 105 (793)
T COG1251 52 ----L-------------AGEKTAEDISLNRNDWYEENGIT--LYTGEKVIQIDRAN---KVVTTDAGR----TVSYDKL 105 (793)
T ss_pred ----c-------------CCCccHHHHhccchhhHHHcCcE--EEcCCeeEEeccCc---ceEEccCCc----Eeeccee
Confidence 0 00012356666667788888988 89999999999854 788887775 8999999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-- 231 (446)
|+||| |.|.+|++||.+.+. ++....+.+.. .-..++-+|||+|.-|+|.|..|...|-+|++++-.+.
T Consensus 106 ilATG--S~pfi~PiPG~~~~~--v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM 181 (793)
T COG1251 106 IIATG--SYPFILPIPGSDLPG--VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM 181 (793)
T ss_pred EEecC--ccccccCCCCCCCCC--eeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH
Confidence 99999 999999999987532 22222221111 11245578999999999999999999999999998775
Q ss_pred --------ccccccC-CCCC-CeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCCCC-----eeee
Q 013303 232 --------DETHEKQ-PGYD-NMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLETNG-----IVTV 293 (446)
Q Consensus 232 --------~~~~~~~-~~~~-~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g-----~i~~ 293 (446)
...+++. .+.+ .+.+....+++.+++ .+.|+||+.+++|.||+|+|.+|+..+-.+.| .|.+
T Consensus 182 erQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvv 261 (793)
T COG1251 182 ERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVV 261 (793)
T ss_pred HHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeee
Confidence 1111111 1122 455555555554433 28999999999999999999999987643222 3777
Q ss_pred CCCCcccccccccCCCCCCCeEEecCCC--ccCch---hHHHHHHHHHHHHHcCCCC
Q 013303 294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQ--KVIPF---PFFELQSKWIASVLSGRIV 345 (446)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~--~~~~~---~~~~~qa~~~a~~l~g~~~ 345 (446)
|+.++ +++|+||++|-+. .+..+ .-+--||+.+|.++.|...
T Consensus 262 nd~mq----------TsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 262 NDYMQ----------TSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred ccccc----------ccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence 77777 6799999999664 22221 2235699999999998744
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=5e-20 Score=172.04 Aligned_cols=325 Identities=18% Similarity=0.174 Sum_probs=198.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
..|++.||-||+-|+.|..|.+.+ ++++.+||.+.+ .|+... +.|+..+.-+.+-+-.....|...++|
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGm--------llegstlQv~FlkDLVTl~~PTs~ySF 74 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGM--------LLEGSTLQVPFLKDLVTLVDPTSPYSF 74 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCc--------ccCCccccccchhhhccccCCCCchHH
Confidence 469999999999999999998875 789999997644 565421 111111112222233333445554444
Q ss_pred CCCCCCcCC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCCCceEEEEEcEE
Q 013303 81 QAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 81 ~d~~~~~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~~~~~~~~~d~V 158 (446)
-.|-..... .........++++.|+.+|+++.+.++ +.++|+++|+.|...+.+ ...+......+ ..++++.|
T Consensus 75 LNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar~l 149 (436)
T COG3486 75 LNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDAVVRLFVVTANG--TVYRARNL 149 (436)
T ss_pred HHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC---CccccCCeeccccccCCcceeEEEEEcCCC--cEEEeeeE
Confidence 333211110 011122456789999999999999988 338999999987444322 23322222222 27999999
Q ss_pred EEccCCCCCCccCC-CCCCCCCCccEEEeeecCC-CCCCCCCE-EEEEecCCcHHHHHHHHhcc----CCEEEEEEecCC
Q 013303 159 VVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRI-PNPFQDQV-VILIGHYASGLDIKRDLAGF----AKEVHIASRSVA 231 (446)
Q Consensus 159 VvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~-~~~~~~k~-VvVVG~G~sg~eia~~l~~~----~~~V~l~~r~~~ 231 (446)
||++| ..|.+|+ +..+.. .+++|+.+|.. ..+..+|+ |.|||+|.||.|+-..|... ..++.|+.|+..
T Consensus 150 Vlg~G--~~P~IP~~f~~l~~--~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~g 225 (436)
T COG3486 150 VLGVG--TQPYIPPCFRSLIG--ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSG 225 (436)
T ss_pred EEccC--CCcCCChHHhCcCc--cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCC
Confidence 99999 8999995 333322 47999999863 23344555 99999999999999998743 346899999874
Q ss_pred ---------------cc---cc------------------------------------ccCCC-CC--CeeeccceeEEc
Q 013303 232 ---------------DE---TH------------------------------------EKQPG-YD--NMWLHSMVERAN 254 (446)
Q Consensus 232 ---------------~~---~~------------------------------------~~~~~-~~--~v~~~~~v~~i~ 254 (446)
++ .+ +.+.. .. .+...++|..++
T Consensus 226 f~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~ 305 (436)
T COG3486 226 FLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVE 305 (436)
T ss_pred CCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeee
Confidence 00 00 00000 11 222345677776
Q ss_pred cCC--cEEe--c---CC--cEEeecEEEEecCccCCCC-CCC---------CCCeeeeCCCCcccccccccCCCCCCCeE
Q 013303 255 EDG--TVVF--R---NG--RVVSADVIMHCTGYKYNYP-FLE---------TNGIVTVDDNRVGPLYKHVFPPVLAPGLS 315 (446)
Q Consensus 255 ~~~--~v~~--~---dG--~~~~~D~vi~atG~~~~~~-~l~---------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~ 315 (446)
..+ .+.+ . +| +++++|+||+||||....| ||+ ++|...++.... -.-.....-.||
T Consensus 306 ~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~-----v~~~~~~~~~if 380 (436)
T COG3486 306 PAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYR-----VLWDGPGKGRIF 380 (436)
T ss_pred cCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCcee-----eecCCCCcceEE
Confidence 444 2322 1 22 4578999999999998877 653 334444433221 111001123688
Q ss_pred EecCCC-----ccCchhHHHHHHHHHHHHHcCCCCCCCHH
Q 013303 316 FVGIPQ-----KVIPFPFFELQSKWIASVLSGRIVLPSQD 350 (446)
Q Consensus 316 ~iG~~~-----~~~~~~~~~~qa~~~a~~l~g~~~lp~~~ 350 (446)
+.|... ..+.+.+...-|..+++-|.|+...|...
T Consensus 381 vqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~~~~~~ 420 (436)
T COG3486 381 VQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREKYPVPA 420 (436)
T ss_pred EecccccccccCCccchHHHHHHHHHHHHHhCcCCCCCcc
Confidence 887542 22345666778888888899987755443
No 82
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.75 E-value=8.4e-18 Score=165.92 Aligned_cols=157 Identities=27% Similarity=0.438 Sum_probs=115.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||||||++|..|++.|++|++||+.+.+||...|.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------------------- 165 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------------------- 165 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec-------------------------------------
Confidence 4789999999999999999999999999999999999999884
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+.|-..+++.+...++.++.|++ ++.|++|-. .++.+. ..-.||+|++|
T Consensus 166 --------------IP~~kl~k~i~d~~i~~l~~~Gv~--~~~~~~vG~---------~it~~~-----L~~e~Dav~l~ 215 (457)
T COG0493 166 --------------IPDFKLPKDILDRRLELLERSGVE--FKLNVRVGR---------DITLEE-----LLKEYDAVFLA 215 (457)
T ss_pred --------------CchhhccchHHHHHHHHHHHcCeE--EEEcceECC---------cCCHHH-----HHHhhCEEEEe
Confidence 122222357888888888888866 887776631 112211 12456999999
Q ss_pred cCCCCCCccCCCCCCCCCCccEEEeeec--------------CCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEE
Q 013303 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY--------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA 226 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~--------------~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~ 226 (446)
+|. ..|+..++||.+. +| +....+| .....-+||+|+|||+|.+++|++....+.|. +|+.+
T Consensus 216 ~G~-~~~~~l~i~g~d~-~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~ 292 (457)
T COG0493 216 TGA-GKPRPLDIPGEDA-KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCF 292 (457)
T ss_pred ccc-cCCCCCCCCCcCC-Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEe
Confidence 997 6788888998763 11 1111111 11122356999999999999999988888876 68888
Q ss_pred Ee
Q 013303 227 SR 228 (446)
Q Consensus 227 ~r 228 (446)
.+
T Consensus 293 ~~ 294 (457)
T COG0493 293 YR 294 (457)
T ss_pred cc
Confidence 64
No 83
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.74 E-value=2.1e-16 Score=155.01 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=39.2
Q ss_pred CCeEEEECcChHHHHHHHHHH-HCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~-~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
.++|+||||||||+.||.+|+ +.|++|+|||+.+.+||.+++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 468999999999999999875 5699999999999999999983
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.73 E-value=4.5e-17 Score=170.16 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=35.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 40 (446)
.++|+|||||||||+||..|++.|++|++||+....|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 579999999999999999999999999999997665554
No 85
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.71 E-value=2.1e-16 Score=161.64 Aligned_cols=284 Identities=20% Similarity=0.264 Sum_probs=163.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||.|||||+||-.|-+.|+.|+|+||.+++||...|. .
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------i--------------------------- 1828 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------I--------------------------- 1828 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------C---------------------------
Confidence 4799999999999999999999999999999999999999884 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+..-..+.+.+.-.+...+-|++ +..|+++-. . |..+. ..-..|+||+|
T Consensus 1829 ---------------pnmkldk~vv~rrv~ll~~egi~--f~tn~eigk--------~-vs~d~-----l~~~~daiv~a 1877 (2142)
T KOG0399|consen 1829 ---------------PNMKLDKFVVQRRVDLLEQEGIR--FVTNTEIGK--------H-VSLDE-----LKKENDAIVLA 1877 (2142)
T ss_pred ---------------CccchhHHHHHHHHHHHHhhCce--EEeeccccc--------c-ccHHH-----HhhccCeEEEE
Confidence 11111134566666777777876 555655422 1 22211 13568999999
Q ss_pred cCCCCCCccCCCCCCCC----CCccEEEee--------ecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE-EEEEEe
Q 013303 162 NGHFSVPRLAQVPGIDS----WPGKQMHSH--------NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-VHIASR 228 (446)
Q Consensus 162 tG~~s~p~~p~i~G~~~----~~g~~~hs~--------~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~-V~l~~r 228 (446)
+|. ..|+-.++||.+. |.-..+|.. .-.....-+||+|+|||||.+|-|+...-.++|++ |.-+.-
T Consensus 1878 ~gs-t~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~el 1956 (2142)
T KOG0399|consen 1878 TGS-TTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFEL 1956 (2142)
T ss_pred eCC-CCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceee
Confidence 996 5788888998764 110111111 00111234799999999999999988777777654 433322
Q ss_pred cC--Ccccc--ccCCCCCCe-----------------------ee-------cccee-----EEc--c--CCc---EEec
Q 013303 229 SV--ADETH--EKQPGYDNM-----------------------WL-------HSMVE-----RAN--E--DGT---VVFR 262 (446)
Q Consensus 229 ~~--~~~~~--~~~~~~~~v-----------------------~~-------~~~v~-----~i~--~--~~~---v~~~ 262 (446)
-+ +.+.. .-.++++.+ .. +..|+ +++ . .|. +...
T Consensus 1957 lp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~ 2036 (2142)
T KOG0399|consen 1957 LPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEIN 2036 (2142)
T ss_pred cCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcC
Confidence 11 10000 000000000 00 01121 111 1 111 1122
Q ss_pred CC-cEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhH---HH--HHHHHH
Q 013303 263 NG-RVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPF---FE--LQSKWI 336 (446)
Q Consensus 263 dG-~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~---~~--~qa~~~ 336 (446)
+. +.+++|.||+|.||.-.-+-+.+...+..|.....---+..|.++ .+.+|++|++..+....+ -| .-|+-+
T Consensus 2037 ~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~-v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2037 NSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTD-VAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred CcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCcccccc-ccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 22 347899999999998654443332224444332211112225555 899999999986554322 22 223334
Q ss_pred HHHHcCCCCCCCHHHHHH
Q 013303 337 ASVLSGRIVLPSQDEMME 354 (446)
Q Consensus 337 a~~l~g~~~lp~~~~m~~ 354 (446)
-..+.|.-.||..--+.+
T Consensus 2116 d~~~~~~t~l~~~ggiv~ 2133 (2142)
T KOG0399|consen 2116 DELMGGTTDLPGDGGIVQ 2133 (2142)
T ss_pred HHHhCCcccCCCCCchhh
Confidence 445566666777654443
No 86
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.69 E-value=9.6e-16 Score=141.55 Aligned_cols=160 Identities=23% Similarity=0.349 Sum_probs=108.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
.++|||||+||||+.+|..|+++ ++.|.|+|+.+.++|..+|. ..
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG---------VA------------------------ 66 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG---------VA------------------------ 66 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec---------cC------------------------
Confidence 46899999999999999999984 68999999999999998873 11
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEE-EEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V-~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
|..|.-+.+..-+...+++.... +..|.+| ..+ .+.. .+-.||+|
T Consensus 67 -----------------PDHpEvKnvintFt~~aE~~rfs--f~gNv~vG~dv----------sl~e-----L~~~ydav 112 (468)
T KOG1800|consen 67 -----------------PDHPEVKNVINTFTKTAEHERFS--FFGNVKVGRDV----------SLKE-----LTDNYDAV 112 (468)
T ss_pred -----------------CCCcchhhHHHHHHHHhhccceE--EEecceecccc----------cHHH-----HhhcccEE
Confidence 11122233445555555553332 3334333 111 1111 24579999
Q ss_pred EEccCCCCCCccCCCCCCCCCCccEEEeee----cC-------CCCCCCCCEEEEEecCCcHHHHHHHHhcc--------
Q 013303 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHN----YR-------IPNPFQDQVVILIGHYASGLDIKRDLAGF-------- 219 (446)
Q Consensus 159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~----~~-------~~~~~~~k~VvVVG~G~sg~eia~~l~~~-------- 219 (446)
|+|.|+ ..++..+|||.+. .| ++.... |. ...++.+.+|+|||.|+.++|+|..|...
T Consensus 113 vLaYGa-~~dR~L~IPGe~l-~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~T 189 (468)
T KOG1800|consen 113 VLAYGA-DGDRRLDIPGEEL-SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRT 189 (468)
T ss_pred EEEecC-CCCcccCCCCccc-cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCcccccccc
Confidence 999997 5688889999862 12 222111 22 12356789999999999999999987531
Q ss_pred --------------CCEEEEEEecCC
Q 013303 220 --------------AKEVHIASRSVA 231 (446)
Q Consensus 220 --------------~~~V~l~~r~~~ 231 (446)
-++|+++.|+.+
T Consensus 190 Di~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 190 DIPKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred CCcHHHHhhhhcCCcceEEEEeccCc
Confidence 137999999875
No 87
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.67 E-value=2e-14 Score=138.54 Aligned_cols=204 Identities=21% Similarity=0.299 Sum_probs=132.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC---CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g---~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
+++|+|||+|++|+.+|.+|++.- ..|.|||+.+.+|+-..|.+.. +....|.|...|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~-------------------p~~~lNv~a~~m 61 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEE-------------------PEHLLNVPAARM 61 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCC-------------------chhhhccccccc
Confidence 579999999999999999999852 2399999999999887775321 112233333333
Q ss_pred cc--CCCC-----CCc----C-C--CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCC----cEEeCeEEEEEEEcCC-Cce
Q 013303 79 GF--QAYP-----FVA----R-N--YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ----VVRLHTEVLNARLVES-NKW 139 (446)
Q Consensus 79 ~~--~d~~-----~~~----~-~--~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~----~i~~~~~V~~v~~~~~-~~~ 139 (446)
+. +|.| |-. . . .+...+...||++..+.+|+.++...+-... .....++++++.+..+ +.|
T Consensus 62 S~~~pD~p~~F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~ 141 (474)
T COG4529 62 SAFAPDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGY 141 (474)
T ss_pred cccCCCCchHHHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceE
Confidence 21 2311 000 0 0 1124567889999999999988877652111 2344667777777632 678
Q ss_pred EEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccE-EEeeecCCCC---CCCCCEEEEEecCCcHHHHHHH
Q 013303 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQ-MHSHNYRIPN---PFQDQVVILIGHYASGLDIKRD 215 (446)
Q Consensus 140 ~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~-~hs~~~~~~~---~~~~k~VvVVG~G~sg~eia~~ 215 (446)
.++..++. +..||.+|+|||| +.|..+. -. ..+.+.. .++..|.... --.+.+|+|+|+|.+.+|....
T Consensus 142 ~~~~~~g~----~~~ad~~Vlatgh-~~~~~~~-~~-~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~ 214 (474)
T COG4529 142 LVTTADGP----SEIADIIVLATGH-SAPPADP-AA-RDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLV 214 (474)
T ss_pred EEecCCCC----eeeeeEEEEeccC-CCCCcch-hh-hccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHH
Confidence 88888775 7899999999997 3333332 11 1222221 2222222111 1235679999999999999999
Q ss_pred HhccCC--EEEEEEecCC
Q 013303 216 LAGFAK--EVHIASRSVA 231 (446)
Q Consensus 216 l~~~~~--~V~l~~r~~~ 231 (446)
|.+.|. +||++.|+..
T Consensus 215 l~~~gh~g~It~iSRrGl 232 (474)
T COG4529 215 LRRRGHKGPITAISRRGL 232 (474)
T ss_pred HhccCCccceEEEecccc
Confidence 998765 5999999763
No 88
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=151.14 Aligned_cols=204 Identities=20% Similarity=0.216 Sum_probs=139.6
Q ss_pred HHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC
Q 013303 114 REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193 (446)
Q Consensus 114 ~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~ 193 (446)
.+.++. ++.+++|..+++.. .+|.+.++ ++.||++|+||| +.|..++ +. +..............
T Consensus 64 ~~~~i~--~~~~~~v~~id~~~---~~v~~~~g-----~~~yd~LvlatG--a~~~~~~--~~--~~~~~~~~~~~~~~~ 127 (415)
T COG0446 64 RATGID--VRTGTEVTSIDPEN---KVVLLDDG-----EIEYDYLVLATG--ARPRPPP--IS--DWEGVVTLRLREDAE 127 (415)
T ss_pred HhhCCE--EeeCCEEEEecCCC---CEEEECCC-----cccccEEEEcCC--CcccCCC--cc--ccCceEEECCHHHHH
Confidence 345666 88889999998754 56666654 689999999999 7888776 11 111122222222222
Q ss_pred CCC-----CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--cc----ccc----c-CCCCC-CeeeccceeEEccC
Q 013303 194 PFQ-----DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DE----THE----K-QPGYD-NMWLHSMVERANED 256 (446)
Q Consensus 194 ~~~-----~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--~~----~~~----~-~~~~~-~v~~~~~v~~i~~~ 256 (446)
.++ .++|+|||+|..|+++|..+++.|.+|+++...+. .. .+. + +...+ ++.....+.++...
T Consensus 128 ~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~ 207 (415)
T COG0446 128 ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGK 207 (415)
T ss_pred HHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcc
Confidence 111 47999999999999999999999999999998775 11 111 1 11222 35567788888755
Q ss_pred Cc------EEecCCcEEeecEEEEecCccCCCCCCCC--------CCeeeeCCCCcccccccccCCCC-CCCeEEecCCC
Q 013303 257 GT------VVFRNGRVVSADVIMHCTGYKYNYPFLET--------NGIVTVDDNRVGPLYKHVFPPVL-APGLSFVGIPQ 321 (446)
Q Consensus 257 ~~------v~~~dG~~~~~D~vi~atG~~~~~~~l~~--------~g~i~~~~~~~~~l~~~~~~~~~-~p~l~~iG~~~ 321 (446)
.. +...++..+++|.+++++|.+|+..+..+ .|.+.+|+... ++ .+++|++|++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~----------~~~~~~v~a~GD~~ 277 (415)
T COG0446 208 GNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGG----------TSKDPDVYAAGDVA 277 (415)
T ss_pred cCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccc----------cCCCCCEEeccceE
Confidence 43 46788889999999999999998554332 23466665555 33 79999999753
Q ss_pred c-----------cCchhHHHHHHHHHHHHHcCC
Q 013303 322 K-----------VIPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 322 ~-----------~~~~~~~~~qa~~~a~~l~g~ 343 (446)
. ...+..+..|++.++.++.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 278 EIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred eeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 2 222345678888888888864
No 89
>PRK09897 hypothetical protein; Provisional
Probab=99.60 E-value=1.3e-14 Score=146.58 Aligned_cols=199 Identities=18% Similarity=0.273 Sum_probs=111.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCC-CCCCCC--CCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDP-LGVDPN--RYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~-~g~~p~--~~~~~~~~y~~l~~~~~~~ 76 (446)
|++|+||||||+|+++|.+|.+.+ ++|+|||++..+|.-+.+.+...... ....++ ........++-+..+...
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~- 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS- 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH-
Confidence 579999999999999999998864 58999999988985555442110000 000000 000000011100000000
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-------~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
. +..+.... ...+...|+++..+.+|+++..+.+ |....++.+++|++|++.+ +.|.|++.++.
T Consensus 80 ~--~~~~g~~~----~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~V~t~~gg-- 150 (534)
T PRK09897 80 H--LQRYGVKK----ETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVMLATNQDL-- 150 (534)
T ss_pred H--HHhcCCcc----eeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEEEEECCCC--
Confidence 0 00000000 0012346777777777776654443 2222366788999998876 77888775432
Q ss_pred eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecC--CCCCCCCCEEEEEecCCcHHHHHHHHhcc
Q 013303 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR--IPNPFQDQVVILIGHYASGLDIKRDLAGF 219 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~--~~~~~~~k~VvVVG~G~sg~eia~~l~~~ 219 (446)
..+.+|+||+||||. .|..+ ++...| +. ..|. ......+.+|+|+|.|.+++|++..|...
T Consensus 151 -~~i~aD~VVLAtGh~-~p~~~--~~~~~y----i~-~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 151 -PSETFDLAVIATGHV-WPDEE--EATRTY----FP-SPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred -eEEEcCEEEECCCCC-CCCCC--hhhccc----cC-CCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 368999999999973 33322 111111 00 1111 01123468999999999999999998744
No 90
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.59 E-value=1.4e-13 Score=131.00 Aligned_cols=41 Identities=37% Similarity=0.548 Sum_probs=38.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
.++++|||||+|||+||..|++.|++|.++|+++.+||...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 47899999999999999999999999999999999999854
No 91
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=8e-15 Score=137.86 Aligned_cols=149 Identities=17% Similarity=0.317 Sum_probs=105.8
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC------
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP------ 74 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~------ 74 (446)
+.+||+|||||||||.||..+++.|.+|+|||+.+.+|--.......+++- .++..++.+.++.|
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~---------Tn~~~~~~~ls~~p~~~~fl 72 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNF---------TNSEAPDEFLSRNPGNGHFL 72 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccc---------cccccHHHHHHhCCCcchHH
Confidence 367999999999999999999999999999999999873333322211110 02222444444444
Q ss_pred ---------CCCcccC---CCCCCcCCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce
Q 013303 75 ---------RELMGFQ---AYPFVARNYEGSVDLRRYPG---HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW 139 (446)
Q Consensus 75 ---------~~~~~~~---d~~~~~~~~~~~~~~~~~~~---~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~ 139 (446)
.+++.|- ..++.. ....+.||. .+.+.+.|..-+++.|+. ++.+++|.+|++.+ ..+
T Consensus 73 ~sal~~ft~~d~i~~~e~~Gi~~~e-----~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~-~~f 144 (408)
T COG2081 73 KSALARFTPEDFIDWVEGLGIALKE-----EDLGRMFPDSDKASPIVDALLKELEALGVT--IRTRSRVSSVEKDD-SGF 144 (408)
T ss_pred HHHHHhCCHHHHHHHHHhcCCeeEE-----ccCceecCCccchHHHHHHHHHHHHHcCcE--EEecceEEeEEecC-ceE
Confidence 2222211 111111 123455664 688999999999999999 99999999999987 789
Q ss_pred EEEEEeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (446)
Q Consensus 140 ~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~ 170 (446)
.|.+.++. ++.+|.||||||.-|.|.+
T Consensus 145 ~l~t~~g~----~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 145 RLDTSSGE----TVKCDSLILATGGKSWPKL 171 (408)
T ss_pred EEEcCCCC----EEEccEEEEecCCcCCCCC
Confidence 99988874 7999999999998777754
No 92
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.58 E-value=4.2e-15 Score=133.13 Aligned_cols=148 Identities=25% Similarity=0.349 Sum_probs=89.7
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~ 83 (446)
||+|||||+||++||..|++.+.+++++|+.+..+..... ++..+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~---------------------~~~~~~~------------ 47 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC---------------------IPSPLLV------------ 47 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH---------------------HHHHHHH------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc---------------------ccccccc------------
Confidence 7999999999999999999999999999886533221000 0000000
Q ss_pred CCCcCCCCCCCCCCCCCCHHHHH--H--HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-----eEEEEEeCCCceEEEE
Q 013303 84 PFVARNYEGSVDLRRYPGHEEVL--R--YLQNFAREFGVDQVVRLHTEVLNARLVESNK-----WKVKSRKKDDVVEEET 154 (446)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~--~--yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-----~~v~~~~~~~~~~~~~ 154 (446)
........+. + .+.+.....++. ++++++|.+++... .. +.+.... .+...++.
T Consensus 48 -------------~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 110 (201)
T PF07992_consen 48 -------------EIAPHRHEFLPARLFKLVDQLKNRGVE--IRLNAKVVSIDPES-KRVVCPAVTIQVVE-TGDGREIK 110 (201)
T ss_dssp -------------HHHHHHHHHHHHHHGHHHHHHHHHTHE--EEHHHTEEEEEEST-TEEEETCEEEEEEE-TTTEEEEE
T ss_pred -------------cccccccccccccccccccccccceEE--Eeeccccccccccc-cccccCcccceeec-cCCceEec
Confidence 0000001111 1 222223455666 77899999998765 32 2333322 23456899
Q ss_pred EcEEEEccCCCCCCccCCCCCCCC--CCccEEEeeecCCCCCCCCCEEEEEe
Q 013303 155 FDAVVVCNGHFSVPRLAQVPGIDS--WPGKQMHSHNYRIPNPFQDQVVILIG 204 (446)
Q Consensus 155 ~d~VVvAtG~~s~p~~p~i~G~~~--~~g~~~hs~~~~~~~~~~~k~VvVVG 204 (446)
||+||+||| +.|+.|.+||.+. +...+.++..+...... .++|+|||
T Consensus 111 ~d~lviAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~v~VvG 159 (201)
T PF07992_consen 111 YDYLVIATG--SRPRTPNIPGEEVAYFLRGVDDAQRFLELLES-PKRVAVVG 159 (201)
T ss_dssp EEEEEEEST--EEEEEESSTTTTTECBTTSEEHHHHHHTHSST-TSEEEEES
T ss_pred CCeeeecCc--cccceeecCCCccccccccccccccccccccc-cccccccc
Confidence 999999999 8899999999732 11234444443333222 34999999
No 93
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.51 E-value=7.9e-14 Score=130.12 Aligned_cols=210 Identities=18% Similarity=0.194 Sum_probs=132.5
Q ss_pred CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCC-CCCCC-CCCccEEEeeecCCCCC
Q 013303 117 GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGID-SWPGKQMHSHNYRIPNP 194 (446)
Q Consensus 117 ~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~-~~~g~~~hs~~~~~~~~ 194 (446)
|+. +..+.+|..|+..+ ..|.+.++. +|.||.++|||| ..|+-.. +.... +...+++ .|+.+.+
T Consensus 271 GvA--vl~G~kvvkid~~d---~~V~LnDG~----~I~YdkcLIATG--~~Pk~l~~~~~A~~evk~kit---~fr~p~D 336 (659)
T KOG1346|consen 271 GVA--VLRGRKVVKIDEED---KKVILNDGT----TIGYDKCLIATG--VRPKKLQVFEEASEEVKQKIT---YFRYPAD 336 (659)
T ss_pred ceE--EEeccceEEeeccc---CeEEecCCc----EeehhheeeecC--cCcccchhhhhcCHHhhhhee---EEecchH
Confidence 555 66677888887544 678888876 899999999999 6776543 32211 1122232 2444554
Q ss_pred CC--------CCEEEEEecCCcHHHHHHHHhc----cCCEEEEEEecCC------cccc-----ccCCCCC-Ceeeccce
Q 013303 195 FQ--------DQVVILIGHYASGLDIKRDLAG----FAKEVHIASRSVA------DETH-----EKQPGYD-NMWLHSMV 250 (446)
Q Consensus 195 ~~--------~k~VvVVG~G~sg~eia~~l~~----~~~~V~l~~r~~~------~~~~-----~~~~~~~-~v~~~~~v 250 (446)
|+ -++|.|||+|..|.|+|..|.+ .|.+|+.+-.... ++.+ .++.+.+ .+.-+..|
T Consensus 337 F~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v 416 (659)
T KOG1346|consen 337 FKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKV 416 (659)
T ss_pred HHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhh
Confidence 42 3789999999999999999975 3567877755432 1111 1222222 34445556
Q ss_pred eEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCC---cc-
Q 013303 251 ERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ---KV- 323 (446)
Q Consensus 251 ~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~---~~- 323 (446)
+++.... .+.+.||.++..|.||.|+|-.||..+....| +.+|+..-+-..+..+.. -.|||+.|+.. ++
T Consensus 417 ~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sg-LeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~ 493 (659)
T KOG1346|consen 417 ESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASG-LEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGV 493 (659)
T ss_pred hhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccc-ceeecccCcEEeeheeec--ccceeeecchhhhhccc
Confidence 6654332 26789999999999999999999998877665 666665433222222222 36999999543 11
Q ss_pred ------CchhHHHHHHHHHHHHHcCC
Q 013303 324 ------IPFPFFELQSKWIASVLSGR 343 (446)
Q Consensus 324 ------~~~~~~~~qa~~~a~~l~g~ 343 (446)
...-.+...+|.+..+++|.
T Consensus 494 LGrRRVehhdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 494 LGRRRVEHHDHAVVSGRLAGENMTGA 519 (659)
T ss_pred ccceeccccccceeeceecccccccc
Confidence 11122344566777777664
No 94
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.45 E-value=2.2e-13 Score=133.59 Aligned_cols=153 Identities=27% Similarity=0.394 Sum_probs=82.9
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC--------ceeeeCC-CCCCCCC-CCCCCCCCccCCccCceeec
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTS-ETESDPL-GVDPNRYPVHSSLYKSLRVN 72 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--------G~w~~~~-~~~~~~~-g~~p~~~~~~~~~y~~l~~~ 72 (446)
+||+|||||||||.||..|++.|.+|+|+|+++.+| |.|+.+. ......+ ...+.. ...+.+.+...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~---~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRN---PKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBT---TTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccc---hHHHHHHHhcC
Confidence 689999999999999999999999999999999886 6777653 1111100 000000 00011111111
Q ss_pred CCCCCcccC---CCCCCcCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303 73 LPRELMGFQ---AYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (446)
Q Consensus 73 ~~~~~~~~~---d~~~~~~~~~~~~~~~~~~---~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~ 146 (446)
.+.+++.|- ..++.. ..+...|| ....+.+.|...+++.+++ ++++++|.+|...+++.|.|.+++.
T Consensus 78 ~~~d~~~ff~~~Gv~~~~-----~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~f~v~~~~~ 150 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKI-----EEDGRVFPKSDKASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDGVFGVKTKNG 150 (409)
T ss_dssp -HHHHHHHHHHTT--EEE------STTEEEETT--HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTEEEEEEETTT
T ss_pred CHHHHHHHHHhcCCeEEE-----cCCCEECCCCCcHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCceeEeeccCc
Confidence 111111110 111111 11233344 4578999999999999998 9999999999987734488888322
Q ss_pred CCceEEEEEcEEEEccCCCCCCc
Q 013303 147 DDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 147 ~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
.++.+|.||+|||..+.|.
T Consensus 151 ----~~~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 151 ----GEYEADAVILATGGKSYPK 169 (409)
T ss_dssp ----EEEEESEEEE----SSSGG
T ss_pred ----ccccCCEEEEecCCCCccc
Confidence 4899999999999766654
No 95
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.44 E-value=6.3e-13 Score=113.68 Aligned_cols=134 Identities=26% Similarity=0.380 Sum_probs=90.7
Q ss_pred EEECcChHHHHHHHHHHHC-----CCcEEEEeeCCCc-CceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 6 AVIGAGAAGLVVGHELLRE-----GHTVVVYEKGEQV-GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 6 ~IIGaG~aGl~aA~~l~~~-----g~~v~v~e~~~~~-GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
+|||||++|++++.+|.+. ..+|+|||+.+.- |+.|... .-+.+..|++...|.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~--------------------~~~~~llN~~a~~~s 60 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPD--------------------QPPSHLLNTPADQMS 60 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCC--------------------CChHHhhcccccccc
Confidence 6999999999999999987 4689999996542 3456542 122334455555444
Q ss_pred cC-CCC---CCcCC---C---CCCCCCCCCCCHHHHHHHHHHHHHHhC--CCC---cEEeCeEEEEEEEcCCCceEEEEE
Q 013303 80 FQ-AYP---FVARN---Y---EGSVDLRRYPGHEEVLRYLQNFAREFG--VDQ---VVRLHTEVLNARLVESNKWKVKSR 144 (446)
Q Consensus 80 ~~-d~~---~~~~~---~---~~~~~~~~~~~~~~v~~yl~~~~~~~~--l~~---~i~~~~~V~~v~~~~~~~~~v~~~ 144 (446)
.. +-| |.... . ........|+++..+.+||.++.+..- +.. ....+.+|+.|++.+ +.|.|.+.
T Consensus 61 ~~~~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~-~~~~v~~~ 139 (156)
T PF13454_consen 61 LFPDDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD-DGYRVVTA 139 (156)
T ss_pred cccccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC-CcEEEEEC
Confidence 32 111 11000 0 012235789999999999998877752 211 123467999999887 77988887
Q ss_pred eCCCceEEEEEcEEEEccCC
Q 013303 145 KKDDVVEEETFDAVVVCNGH 164 (446)
Q Consensus 145 ~~~~~~~~~~~d~VVvAtG~ 164 (446)
++. .+.||.||+||||
T Consensus 140 ~g~----~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 140 DGQ----SIRADAVVLATGH 155 (156)
T ss_pred CCC----EEEeCEEEECCCC
Confidence 765 7899999999996
No 96
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.34 E-value=7.9e-12 Score=110.28 Aligned_cols=82 Identities=13% Similarity=0.309 Sum_probs=57.2
Q ss_pred CceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC-----CCCCEEEEEecCCcHHH
Q 013303 137 NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLD 211 (446)
Q Consensus 137 ~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~-----~~~k~VvVVG~G~sg~e 211 (446)
....+.++++. ++.|++|++||| .+|.+-. +|.+. +++-..+-..... -+.|+|+|+|.|-+++|
T Consensus 79 ~ehci~t~~g~----~~ky~kKOG~tg--~kPklq~-E~~n~---~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~E 148 (334)
T KOG2755|consen 79 SEHCIHTQNGE----KLKYFKLCLCTG--YKPKLQV-EGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAME 148 (334)
T ss_pred ccceEEecCCc----eeeEEEEEEecC--CCcceee-cCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHH
Confidence 34667777765 799999999999 8887642 33222 3444333333222 35799999999999999
Q ss_pred HHHHHhccCCEEEEEEecC
Q 013303 212 IKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 212 ia~~l~~~~~~V~l~~r~~ 230 (446)
++.++.. .+|+|....+
T Consensus 149 l~yElk~--~nv~w~ikd~ 165 (334)
T KOG2755|consen 149 LTYELKI--LNVTWKIKDE 165 (334)
T ss_pred HHHHhhc--ceeEEEecch
Confidence 9999864 4688877654
No 97
>PRK06847 hypothetical protein; Provisional
Probab=99.34 E-value=4.1e-11 Score=118.12 Aligned_cols=157 Identities=21% Similarity=0.200 Sum_probs=91.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLPR 75 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~~ 75 (446)
++||+|||||++||++|..|++.|++|+|+|+.+.+. ......+... .+..|+.+. +. .......+....+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~--~~~~~~~~~~~~~~~~~ 81 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE--CLEAGFGFDGVDLFDPD 81 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHH--HHHhCCCccceEEECCC
Confidence 5799999999999999999999999999999986532 1111100000 000011000 00 00000111111110
Q ss_pred CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~ 155 (446)
.. .+..++.+... ...........+.++.++|.+.+.+.++. ++++++|++++..+ +.++|++.++. ++.+
T Consensus 82 g~-~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~~~a 152 (375)
T PRK06847 82 GT-LLAELPTPRLA-GDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDD-DGVTVTFSDGT----TGRY 152 (375)
T ss_pred CC-EEEecCccccc-ccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcC-CEEEEEEcCCC----EEEc
Confidence 00 00011110000 00001123456788999999999888887 99999999998766 66777776553 6899
Q ss_pred cEEEEccCCCCCCc
Q 013303 156 DAVVVCNGHFSVPR 169 (446)
Q Consensus 156 d~VVvAtG~~s~p~ 169 (446)
|.||+|+|.++..+
T Consensus 153 d~vI~AdG~~s~~r 166 (375)
T PRK06847 153 DLVVGADGLYSKVR 166 (375)
T ss_pred CEEEECcCCCcchh
Confidence 99999999877554
No 98
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.31 E-value=1.7e-11 Score=113.36 Aligned_cols=141 Identities=22% Similarity=0.174 Sum_probs=87.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeec-CCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~-~~~~~~~~ 80 (446)
..||+||||||||++||..|++.|++|+|+|+...+||...-.. . .++..... .....+.-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg--------~----------~~~~~~v~~~~~~~l~~ 86 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGG--------M----------LFNKIVVQEEADEILDE 86 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCc--------c----------ccccccchHHHHHHHHH
Confidence 47999999999999999999999999999999988876422110 0 00000000 00000010
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe------C-CCceEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK------K-DDVVEE 152 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~------~-~~~~~~ 152 (446)
...++... .+.....++.++...|.+.+.+.|+. ++++++|..+...+++. +-+.+.. + ..+..+
T Consensus 87 ~gv~~~~~-----~~g~~~vd~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~ 159 (257)
T PRK04176 87 FGIRYKEV-----EDGLYVADSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT 159 (257)
T ss_pred CCCCceee-----cCcceeccHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE
Confidence 11222111 00112345678888899999999988 99999999997655322 2222211 1 113457
Q ss_pred EEEcEEEEccCCCCC
Q 013303 153 ETFDAVVVCNGHFSV 167 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~ 167 (446)
+.++.||+|||+++.
T Consensus 160 i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 160 IEAKAVVDATGHDAE 174 (257)
T ss_pred EEcCEEEEEeCCCcH
Confidence 999999999998653
No 99
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.29 E-value=2.3e-11 Score=115.61 Aligned_cols=146 Identities=23% Similarity=0.220 Sum_probs=88.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
+||+|||||++|+++|..|++.|++|+|+|+...++..+....-.. ....+.. ..... ..........+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~~~~~~~~~~~~-- 75 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLP-LELIV--NLVRGARFFSPNGDS-- 75 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCC-chhhh--hheeeEEEEcCCCcE--
Confidence 5899999999999999999999999999999877654322110000 0000000 00000 000000000000000
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
.+.+.+. ......++.++.+.|.+.+.+.++. ++++++|+.+...+ +.+.+.+.++ ..++++|+||+
T Consensus 76 ~~~~~~~-------~~~~~i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~-~~~~~~~~~~---~~~~~a~~vv~ 142 (295)
T TIGR02032 76 VEIPIET-------ELAYVIDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHD-DRVVVIVRGG---EGTVTAKIVIG 142 (295)
T ss_pred EEeccCC-------CcEEEEEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeC-CEEEEEEcCc---cEEEEeCEEEE
Confidence 0111110 1122357788999999999988887 89999999998766 5566655432 24789999999
Q ss_pred ccCCCC
Q 013303 161 CNGHFS 166 (446)
Q Consensus 161 AtG~~s 166 (446)
|+|.++
T Consensus 143 a~G~~s 148 (295)
T TIGR02032 143 ADGSRS 148 (295)
T ss_pred CCCcch
Confidence 999765
No 100
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.27 E-value=6.4e-11 Score=117.15 Aligned_cols=149 Identities=18% Similarity=0.194 Sum_probs=89.7
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCc---CceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV---GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~---GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
+||+||||||||+++|+.|++.|++|+|+|+. ... ||..... ..+..+.. . . +....+.......|....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~---~l~~l~i~-~-~-~~~~~~~~~~~~~~~~~~ 74 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPC---LIEEFDIP-D-S-LIDRRVTQMRMISPSRVP 74 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHh---hhhhcCCc-h-H-HHhhhcceeEEEcCCCce
Confidence 59999999999999999999999999999997 221 1111100 00111110 0 0 001122233332322210
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC----CCceEEEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK----DDVVEEET 154 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~----~~~~~~~~ 154 (446)
-..+++... ......++..+.++|.+.+.+.|++ ++. ++|+++...+ +.+.|++.++ .++..++.
T Consensus 75 ~~~~~~~~~-------~~~~~~~r~~fd~~L~~~a~~~G~~--v~~-~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~~i~ 143 (388)
T TIGR02023 75 IKVTIPSED-------GYVGMVRREVFDSYLRERAQKAGAE--LIH-GLFLKLERDR-DGVTLTYRTPKKGAGGEKGSVE 143 (388)
T ss_pred eeeccCCCC-------CceEeeeHHHHHHHHHHHHHhCCCE--EEe-eEEEEEEEcC-CeEEEEEEeccccCCCcceEEE
Confidence 000111100 0111368899999999999998887 654 5688987766 6788887652 22335799
Q ss_pred EcEEEEccCCCCCC
Q 013303 155 FDAVVVCNGHFSVP 168 (446)
Q Consensus 155 ~d~VVvAtG~~s~p 168 (446)
+|.||.|+|.+|..
T Consensus 144 a~~VI~AdG~~S~v 157 (388)
T TIGR02023 144 ADVVIGADGANSPV 157 (388)
T ss_pred eCEEEECCCCCcHH
Confidence 99999999976654
No 101
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.27 E-value=3.9e-11 Score=110.64 Aligned_cols=138 Identities=22% Similarity=0.204 Sum_probs=87.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc-eeeeCCCCCCCCCCCCCCCCCccCCccCceeec-CCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG-SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG-~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~-~~~~~~~ 79 (446)
.+||+|||||||||+||..|++.|++|+|+||+..+|| .|... . .+..+... .....+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg---------~----------~~~~~~~~~~~~~~l~ 81 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGG---------M----------LFSKIVVEKPAHEILD 81 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCC---------c----------ceecccccchHHHHHH
Confidence 47999999999999999999999999999999998864 44321 0 01110000 0001111
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE---EEEEe------CC-Cc
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK---VKSRK------KD-DV 149 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~---v~~~~------~~-~~ 149 (446)
-.+.++... .......++.++.+.|.+.+.+.++. +.++++|..+...+ +.+. |.+.. +. .+
T Consensus 82 ~~gi~~~~~-----~~g~~~~~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~-~~~~V~GVv~~~~~v~~~g~~~d 153 (254)
T TIGR00292 82 EFGIRYEDE-----GDGYVVADSAEFISTLASKALQAGAK--IFNGTSVEDLITRD-DTVGVAGVVINWSAIELAGLHVD 153 (254)
T ss_pred HCCCCeeec-----cCceEEeeHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeC-CCCceEEEEeCCccccccCCCCC
Confidence 112233221 00112235678899999999999987 99999999988765 3222 22211 11 12
Q ss_pred eEEEEEcEEEEccCCCC
Q 013303 150 VEEETFDAVVVCNGHFS 166 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s 166 (446)
..++.++.||.|||+.+
T Consensus 154 ~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 154 PLTQRSRVVVDATGHDA 170 (254)
T ss_pred CEEEEcCEEEEeecCCc
Confidence 46799999999999754
No 102
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.26 E-value=4.9e-11 Score=118.18 Aligned_cols=146 Identities=23% Similarity=0.268 Sum_probs=91.9
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC---CCCCCCCCCCCccCCccCceeecCCCCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---DPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~---~~~g~~p~~~~~~~~~y~~l~~~~~~~~ 77 (446)
|++||+||||||||++||+.|++.|++|+|+|+.+.+|........... +.....+... +...+... ....+...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i~~~v~~~-~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-IERKVTGA-RIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-hheeeeee-EEEecCCc
Confidence 5789999999999999999999999999999999888753222100000 0000000000 00001100 00011000
Q ss_pred cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~ 157 (446)
..+ ..+ ........+..+.++|.+.+++.|.+ ++.+++|..+..++ +...+.+..++ .++.+++
T Consensus 80 ~~~---~~~-------~~~~y~v~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~-~~~~~~~~~~~---~e~~a~~ 143 (396)
T COG0644 80 VAI---EVP-------VGEGYIVDRAKFDKWLAERAEEAGAE--LYPGTRVTGVIRED-DGVVVGVRAGD---DEVRAKV 143 (396)
T ss_pred eEE---ecC-------CCceEEEEhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeC-CcEEEEEEcCC---EEEEcCE
Confidence 000 000 00122346788999999999999999 99999999999887 55666555543 5899999
Q ss_pred EEEccCC
Q 013303 158 VVVCNGH 164 (446)
Q Consensus 158 VVvAtG~ 164 (446)
||.|+|.
T Consensus 144 vI~AdG~ 150 (396)
T COG0644 144 VIDADGV 150 (396)
T ss_pred EEECCCc
Confidence 9999995
No 103
>PRK08244 hypothetical protein; Provisional
Probab=99.25 E-value=9.8e-11 Score=119.57 Aligned_cols=155 Identities=24% Similarity=0.225 Sum_probs=90.4
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLP 74 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~ 74 (446)
|.+||+||||||+||++|..|++.|++|+|+|+.+.+. ......++.- .+..|+... +. ....+........
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~--l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLER--FLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHH--HHhhcccccceEEecc
Confidence 56899999999999999999999999999999976431 0000000000 000111000 00 0000111110000
Q ss_pred CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~ 154 (446)
...+.+...+. ........+...+.+.|.+.+++.+++ ++++++|++++..+ +..++++.+.++ ..+++
T Consensus 79 ~~~~~~~~~~~-------~~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~i~ 147 (493)
T PRK08244 79 DTRLDFSALDT-------SSNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDG-DGVEVVVRGPDG-LRTLT 147 (493)
T ss_pred cccCCcccCCC-------CCCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcC-CeEEEEEEeCCc-cEEEE
Confidence 00011111000 000112245678888898888888887 99999999998776 667777765333 34789
Q ss_pred EcEEEEccCCCCCC
Q 013303 155 FDAVVVCNGHFSVP 168 (446)
Q Consensus 155 ~d~VVvAtG~~s~p 168 (446)
+|+||.|.|.+|..
T Consensus 148 a~~vVgADG~~S~v 161 (493)
T PRK08244 148 SSYVVGADGAGSIV 161 (493)
T ss_pred eCEEEECCCCChHH
Confidence 99999999976643
No 104
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.24 E-value=7.6e-11 Score=117.86 Aligned_cols=153 Identities=20% Similarity=0.165 Sum_probs=86.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-CCCCCCC---CCccCC-ccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-LGVDPNR---YPVHSS-LYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-~g~~p~~---~~~~~~-~y~~l~~~~~~~ 76 (446)
++||+||||||||++||..|++.|++|+|+|+.+.+|............. ..+.|.. ..+... ....+.......
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 47999999999999999999999999999999877653211000000000 0000000 000000 000000000111
Q ss_pred C--cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303 77 L--MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 77 ~--~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~ 154 (446)
. +.+.+-.... .........+.++.++|.+.+++.|+. ++.+++|+++...+ +.+.+...++ .++.
T Consensus 85 ~~~~~~~~~~~~~-----~~~~~~~v~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-g~v~~v~~~g----~~i~ 152 (428)
T PRK10157 85 AMTMDYCNGDETS-----PSQRSYSVLRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRD-GKVVGVEADG----DVIE 152 (428)
T ss_pred ceeeccccccccC-----CCCCceeeEHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeC-CEEEEEEcCC----cEEE
Confidence 1 1111100000 001122346788999999999999988 89999999998655 5444333232 2689
Q ss_pred EcEEEEccCCCC
Q 013303 155 FDAVVVCNGHFS 166 (446)
Q Consensus 155 ~d~VVvAtG~~s 166 (446)
+|.||+|+|..+
T Consensus 153 A~~VI~A~G~~s 164 (428)
T PRK10157 153 AKTVILADGVNS 164 (428)
T ss_pred CCEEEEEeCCCH
Confidence 999999999643
No 105
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.22 E-value=1.8e-10 Score=118.76 Aligned_cols=162 Identities=20% Similarity=0.137 Sum_probs=93.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
.+||+||||||+||++|..|++.|++|+|||+.+.++.. +...+..- .+..|+.... .-.......+....+..
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEV-LPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHH-HhhcccCCceEEEcCCC
Confidence 479999999999999999999999999999998765321 11110000 0001111000 00000011111111110
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~ 155 (446)
..+.+++.+.. ...+.......+..++.++|.+.+.++ +++ ++++++|++++..+ +.++|++.+.+++..++++
T Consensus 89 -~~~~~~~~~~~-~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~-~~v~v~~~~~~G~~~~i~a 163 (538)
T PRK06183 89 -RCLAEIARPST-GEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD-DGVTVTLTDADGQRETVRA 163 (538)
T ss_pred -CEEEEEcCCCC-CCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC-CeEEEEEEcCCCCEEEEEE
Confidence 00111111000 000000112345667888888887775 676 99999999999876 6788888754444568999
Q ss_pred cEEEEccCCCCCCc
Q 013303 156 DAVVVCNGHFSVPR 169 (446)
Q Consensus 156 d~VVvAtG~~s~p~ 169 (446)
|+||.|+|.+|..+
T Consensus 164 d~vVgADG~~S~vR 177 (538)
T PRK06183 164 RYVVGCDGANSFVR 177 (538)
T ss_pred EEEEecCCCchhHH
Confidence 99999999877554
No 106
>PRK06834 hypothetical protein; Provisional
Probab=99.20 E-value=1.9e-10 Score=116.73 Aligned_cols=141 Identities=20% Similarity=0.241 Sum_probs=86.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC--cee--eeCCCCC--CCCCCCCCCCCCccCCccCceeec---
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--GSW--IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN--- 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--G~w--~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~--- 72 (446)
..||+||||||+|+++|..|++.|++|+|+|+.+... +.- ...++.- .+..| +++.+...
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lG-----------l~~~l~~~~~~ 71 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRG-----------IADRFLAQGQV 71 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcC-----------cHHHHHhcCCc
Confidence 5799999999999999999999999999999976421 100 0000000 00011 11111100
Q ss_pred -----CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303 73 -----LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (446)
Q Consensus 73 -----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~ 147 (446)
.....+.+.+++.. ...........+.+.|.+.+++.++. ++++++|++++..+ +.+.|++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~-------~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~-~~v~v~~~~g- 140 (488)
T PRK06834 72 AQVTGFAATRLDISDFPTR-------HNYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDD-TGVDVELSDG- 140 (488)
T ss_pred cccceeeeEecccccCCCC-------CCccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CeEEEEECCC-
Confidence 00000111111100 00112235577888898888888887 99999999999876 6677776443
Q ss_pred CceEEEEEcEEEEccCCCCC
Q 013303 148 DVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 148 ~~~~~~~~d~VVvAtG~~s~ 167 (446)
.++.+|+||.|+|.+|.
T Consensus 141 ---~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 141 ---RTLRAQYLVGCDGGRSL 157 (488)
T ss_pred ---CEEEeCEEEEecCCCCC
Confidence 27899999999997664
No 107
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.20 E-value=1.7e-10 Score=114.22 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=86.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCC-CCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE-TESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~-~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.||+||||||||++||..|++.|++|+|+|+....+..|...-. ......|..+. .+ ......+....|... .+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~--~~-~~~i~~~~~~~p~~~-~~- 75 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRD--II-DRRVTKMKMISPSNI-AV- 75 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchh--HH-HhhhceeEEecCCce-EE-
Confidence 48999999999999999999999999999997654332211000 00001111100 00 001112222222211 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc--CCCceEEEEEeCC-----CceEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKD-----DVVEEET 154 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~--~~~~~~v~~~~~~-----~~~~~~~ 154 (446)
++..... ........++..+.++|.+.+.+.|++ ++.+ ++..+... .++.+.|++.... ++..++.
T Consensus 76 ~~~~~~~----~~~~~~~v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~ 148 (398)
T TIGR02028 76 DIGRTLK----EHEYIGMLRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLE 148 (398)
T ss_pred EeccCCC----CCCceeeeeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEE
Confidence 0110000 000112367899999999999999987 7655 47666532 2255777754321 3335799
Q ss_pred EcEEEEccCCCC
Q 013303 155 FDAVVVCNGHFS 166 (446)
Q Consensus 155 ~d~VVvAtG~~s 166 (446)
++.||.|+|.+|
T Consensus 149 a~~VIgADG~~S 160 (398)
T TIGR02028 149 VDAVIGADGANS 160 (398)
T ss_pred eCEEEECCCcch
Confidence 999999999655
No 108
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.19 E-value=5.2e-11 Score=118.63 Aligned_cols=158 Identities=14% Similarity=0.125 Sum_probs=88.6
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-C-CccCCccCce---------
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-Y-PVHSSLYKSL--------- 69 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~-~-~~~~~~y~~l--------- 69 (446)
|.+||+||||||+|+++|..|++.|++|+|||+.+..++..............+.|.. . +..-.+++.+
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 5679999999999999999999999999999997632111000000000000111100 0 0000111111
Q ss_pred --eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303 70 --RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (446)
Q Consensus 70 --~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~ 147 (446)
..-..... ...+|+.... .........++..+.+.|.+.+.+.+++ ++++++|++++..+ +.|+|++.++.
T Consensus 81 ~~~~~~~~~~-~~~~~~~~~~---~~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~ 153 (405)
T PRK05714 81 EMQVWDGSGT-GQIHFSAASV---HAEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG-DDWLLTLADGR 153 (405)
T ss_pred eEEEEcCCCC-ceEEeccccc---CCCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC
Confidence 11111100 0001111000 0000112245567777777777777776 88999999998776 67888876543
Q ss_pred CceEEEEEcEEEEccCCCCCCc
Q 013303 148 DVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 148 ~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
++++|.||.|+|.+|..+
T Consensus 154 ----~~~a~~vVgAdG~~S~vR 171 (405)
T PRK05714 154 ----QLRAPLVVAADGANSAVR 171 (405)
T ss_pred ----EEEeCEEEEecCCCchhH
Confidence 789999999999877543
No 109
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.18 E-value=1.2e-10 Score=115.23 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=88.2
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc--------eeeeCCCCC--CCCCCCCCCCCCccCCccCceeecC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG--------SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL 73 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG--------~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~ 73 (446)
||+||||||+|+++|..|++.|++|+|||+.+.++- .....+... .+..|+...........+..+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999875421 111110000 0011111000000011111111111
Q ss_pred CCC--CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303 74 PRE--LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (446)
Q Consensus 74 ~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~ 150 (446)
+.. .+.+ +.... ........+++.++.+.|.+.+.+.+ +. ++++++|++++..+ +.+.|+..++.
T Consensus 81 ~~~~~~~~~---~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~--- 148 (385)
T TIGR01988 81 GGSFGALHF---DADEI---GLEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHS-DHVELTLDDGQ--- 148 (385)
T ss_pred CCCCceEEe---chhhc---CCCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecC-CeeEEEECCCC---
Confidence 110 1111 11000 00001123567788888888888776 66 89999999998766 67777776543
Q ss_pred EEEEEcEEEEccCCCCC
Q 013303 151 EEETFDAVVVCNGHFSV 167 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~ 167 (446)
++.+|.||.|+|.+|.
T Consensus 149 -~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 149 -QLRARLLVGADGANSK 164 (385)
T ss_pred -EEEeeEEEEeCCCCCH
Confidence 6899999999997664
No 110
>PRK06185 hypothetical protein; Provisional
Probab=99.17 E-value=1.4e-10 Score=115.54 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=86.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC-----ceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-----G~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
.+||+|||||++|+++|..|++.|++|+|+|+.+... ..+......-.+..|......-.....+..+.......
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 5799999999999999999999999999999975431 11110000000001110000000000111111111111
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEE
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEET 154 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~ 154 (446)
.....++.-... ......+.++..+.++|.+.+.+. ++. +.++++|+++...+ +.. .|.+...++ ..++.
T Consensus 86 ~~~~~~~~~~~~----~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~-~~v~~v~~~~~~g-~~~i~ 157 (407)
T PRK06185 86 TVTLADFSRLPT----PYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEG-GRVTGVRARTPDG-PGEIR 157 (407)
T ss_pred EEEecchhhcCC----CCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeC-CEEEEEEEEcCCC-cEEEE
Confidence 111111110000 001122456778888988888765 666 88999999998765 433 345443222 24789
Q ss_pred EcEEEEccCCCCC
Q 013303 155 FDAVVVCNGHFSV 167 (446)
Q Consensus 155 ~d~VVvAtG~~s~ 167 (446)
+|.||.|+|.+|.
T Consensus 158 a~~vI~AdG~~S~ 170 (407)
T PRK06185 158 ADLVVGADGRHSR 170 (407)
T ss_pred eCEEEECCCCchH
Confidence 9999999998764
No 111
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.17 E-value=2.3e-10 Score=113.32 Aligned_cols=140 Identities=21% Similarity=0.182 Sum_probs=86.3
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCC-CCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSET-ESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~-~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
||+||||||||+++|..|++.|++|+|+|+.+.+|+.....-.. .....+..+ .....|..... +.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~ 70 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLAD----CVEHVWPDVYE------YRFPK 70 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhh----HHhhcCCCceE------EecCC
Confidence 79999999999999999999999999999988777643221000 000000000 00011111000 00000
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
.+... ........+..+.+++.+.+.+.++. + +.++|..+....++.|.|++.++. +++++.||.|+
T Consensus 71 ~~~~~------~~~~~~i~~~~l~~~l~~~~~~~gv~--~-~~~~v~~i~~~~~~~~~v~~~~g~----~~~a~~VI~A~ 137 (388)
T TIGR01790 71 QPRKL------GTAYGSVDSTRLHEELLQKCPEGGVL--W-LERKAIHAEADGVALSTVYCAGGQ----RIQARLVIDAR 137 (388)
T ss_pred cchhc------CCceeEEcHHHHHHHHHHHHHhcCcE--E-EccEEEEEEecCCceeEEEeCCCC----EEEeCEEEECC
Confidence 00000 00111256788999999998888875 5 467888888763367888876543 78999999999
Q ss_pred CCCC
Q 013303 163 GHFS 166 (446)
Q Consensus 163 G~~s 166 (446)
|..+
T Consensus 138 G~~s 141 (388)
T TIGR01790 138 GFGP 141 (388)
T ss_pred CCch
Confidence 9655
No 112
>PLN02463 lycopene beta cyclase
Probab=99.17 E-value=1.2e-10 Score=116.07 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=85.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-----CceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
.+||+||||||||+++|..|++.|++|+|+|+.+.. .|.|... ....|... + + ...|......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~----l~~lgl~~--~-l-~~~w~~~~v~---- 95 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE----FEALGLLD--C-L-DTTWPGAVVY---- 95 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH----HHHCCcHH--H-H-HhhCCCcEEE----
Confidence 369999999999999999999999999999986532 1222210 00000000 0 0 0011111100
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d 156 (446)
+.+..... ........++.++.+++.+.+...++. +. .++|++|+..+ +.+.|+++++. ++.+|
T Consensus 96 ---~~~~~~~~-----~~~~y~~V~R~~L~~~Ll~~~~~~GV~--~~-~~~V~~I~~~~-~~~~V~~~dG~----~i~A~ 159 (447)
T PLN02463 96 ---IDDGKKKD-----LDRPYGRVNRKKLKSKMLERCIANGVQ--FH-QAKVKKVVHEE-SKSLVVCDDGV----KIQAS 159 (447)
T ss_pred ---EeCCCCcc-----ccCcceeEEHHHHHHHHHHHHhhcCCE--EE-eeEEEEEEEcC-CeEEEEECCCC----EEEcC
Confidence 00000000 001122357788999999988888876 53 57999998766 67888877653 79999
Q ss_pred EEEEccCCCCC
Q 013303 157 AVVVCNGHFSV 167 (446)
Q Consensus 157 ~VVvAtG~~s~ 167 (446)
.||.|+|+.+.
T Consensus 160 lVI~AdG~~s~ 170 (447)
T PLN02463 160 LVLDATGFSRC 170 (447)
T ss_pred EEEECcCCCcC
Confidence 99999997543
No 113
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.17 E-value=1.2e-10 Score=115.39 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=88.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC----ce----eeeCCCCC--CCCCCCCCCCCCccCCccCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----GS----WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRV 71 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G----G~----w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~ 71 (446)
++||+||||||+|+++|..|++.|++|+|+|+.+.+. +. ....+... .+..|.-+.........+..+..
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 4799999999999999999999999999999976431 00 00000000 00011110000000011111111
Q ss_pred cCC--CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 72 NLP--RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 72 ~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
... .....|....... .......++..+.+.|.+.+++.++. +.++++|++++..+ +.++|++.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~g~-- 154 (392)
T PRK08773 86 WDAGGGGELGFDADTLGR------EQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDA-DRVRLRLDDGR-- 154 (392)
T ss_pred EeCCCCceEEechhccCC------CcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecC-CeEEEEECCCC--
Confidence 000 0011111000000 00112245678888888888888887 89999999998766 66777765543
Q ss_pred eEEEEEcEEEEccCCCCC
Q 013303 150 VEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~ 167 (446)
++.+|.||.|+|.++.
T Consensus 155 --~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 155 --RLEAALAIAADGAAST 170 (392)
T ss_pred --EEEeCEEEEecCCCch
Confidence 7899999999997663
No 114
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.16 E-value=2.2e-10 Score=99.01 Aligned_cols=136 Identities=20% Similarity=0.224 Sum_probs=85.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc-eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC-ccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG-SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL-MGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG-~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~-~~~ 80 (446)
.||+|||||||||+||++|++.|++|+|||++-.+|| .|.-. -+++.+....|... ..-
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GG-------------------mlf~~iVv~~~a~~iL~e 91 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGG-------------------MLFNKIVVREEADEILDE 91 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccc-------------------cccceeeecchHHHHHHH
Confidence 5999999999999999999999999999999988865 55421 12333333322211 111
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-------ceEEEEEeCC-CceEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-------KWKVKSRKKD-DVVEE 152 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-------~~~v~~~~~~-~~~~~ 152 (446)
-..|+.+. .+.-.-.+..++..-|..-+-+.+.. |...+.|+.+--.++. .|+.....+. -+...
T Consensus 92 ~gI~ye~~-----e~g~~v~ds~e~~skl~~~a~~aGak--i~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~ 164 (262)
T COG1635 92 FGIRYEEE-----EDGYYVADSAEFASKLAARALDAGAK--IFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLT 164 (262)
T ss_pred hCCcceec-----CCceEEecHHHHHHHHHHHHHhcCce--eeecceEEEEEEecCCceEEEEEecchhhhcccccCcce
Confidence 11222221 01112234567777777777777866 7778888887544421 2443332221 13457
Q ss_pred EEEcEEEEccCC
Q 013303 153 ETFDAVVVCNGH 164 (446)
Q Consensus 153 ~~~d~VVvAtG~ 164 (446)
+++++||-||||
T Consensus 165 i~a~~VvDaTGH 176 (262)
T COG1635 165 IRAKAVVDATGH 176 (262)
T ss_pred eeEEEEEeCCCC
Confidence 999999999998
No 115
>PRK10015 oxidoreductase; Provisional
Probab=99.16 E-value=4.5e-10 Score=112.19 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=84.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC-CCCCCCCCC---CCccCCccC-cee--ecCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-DPLGVDPNR---YPVHSSLYK-SLR--VNLP 74 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~-~~~g~~p~~---~~~~~~~y~-~l~--~~~~ 74 (446)
++||+||||||||++||..|++.|++|+|+|+.+.+|..-........ ....+.|.. ..+...... .+. ....
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES 84 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence 379999999999999999999999999999998766432110000000 000000000 000000000 000 0000
Q ss_pred CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~ 154 (446)
...+.+..-+... .........+..+.++|.+.+++.|+. ++.+++|+.+...+ +.+.....+ . .++.
T Consensus 85 ~~~~~~~~~~~~~-----~~~~~~~v~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~~v~~~-~---~~i~ 152 (429)
T PRK10015 85 AVTLDFHREQPDV-----PQHASYTVLRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREG-NKVTGVQAG-D---DILE 152 (429)
T ss_pred ceEeecccCCCCC-----CCcCceEeehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeC-CEEEEEEeC-C---eEEE
Confidence 0001110000000 000112246788889999999998987 89999999988654 445433222 2 3689
Q ss_pred EcEEEEccCCCC
Q 013303 155 FDAVVVCNGHFS 166 (446)
Q Consensus 155 ~d~VVvAtG~~s 166 (446)
+|.||+|+|..+
T Consensus 153 A~~VI~AdG~~s 164 (429)
T PRK10015 153 ANVVILADGVNS 164 (429)
T ss_pred CCEEEEccCcch
Confidence 999999999644
No 116
>PRK11445 putative oxidoreductase; Provisional
Probab=99.16 E-value=3e-10 Score=110.75 Aligned_cols=151 Identities=16% Similarity=0.137 Sum_probs=84.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC---------CCCCCCCCCCCccCCccCceeec
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---------DPLGVDPNRYPVHSSLYKSLRVN 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~---------~~~g~~p~~~~~~~~~y~~l~~~ 72 (446)
++||+||||||||+++|..|++. ++|+|+|+.+..+..-...+.... +..|...............+.+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~- 78 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKT- 78 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeE-
Confidence 47999999999999999999999 999999998643200000000000 0011100000000000000000
Q ss_pred CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~ 152 (446)
+.+.+ +.... ........++.++.+.|.+.+ ..+++ ++++++|..++..+ +.|.|++.. ++...+
T Consensus 79 -----~~~~~-~~~~~----~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~-~g~~~~ 143 (351)
T PRK11445 79 -----IDLAN-SLTRN----YQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWRED-DGYHVIFRA-DGWEQH 143 (351)
T ss_pred -----ecccc-cchhh----cCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcC-CEEEEEEec-CCcEEE
Confidence 00000 00000 000112267788888888743 45666 89999999998776 678887643 222346
Q ss_pred EEEcEEEEccCCCCCCc
Q 013303 153 ETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~p~ 169 (446)
+++|.||.|+|..|..+
T Consensus 144 i~a~~vV~AdG~~S~vr 160 (351)
T PRK11445 144 ITARYLVGADGANSMVR 160 (351)
T ss_pred EEeCEEEECCCCCcHHh
Confidence 89999999999766543
No 117
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.16 E-value=1.9e-10 Score=114.98 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=87.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-----CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecC-
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL- 73 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~- 73 (446)
.+||+||||||+|+++|..|++.|++|+|||+.+.. |......+..- ....|+.... .-.......+....
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKI-LPQIGKFRQIRLSDA 96 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhh-HhhcCCccEEEEEeC
Confidence 479999999999999999999999999999998754 21111111000 0011110000 00000011110000
Q ss_pred -CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303 74 -PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (446)
Q Consensus 74 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~ 151 (446)
......+....... ........+..+.+.|.+.+.+. ++. ++++++|++++..+ +.+.|++.++. +..
T Consensus 97 ~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~-~~~ 166 (415)
T PRK07364 97 DYPGVVKFQPTDLGT------EALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ-DAATVTLEIEG-KQQ 166 (415)
T ss_pred CCCceeeeccccCCC------CccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeeEEEEccCC-cce
Confidence 00111111000000 00111123456777777777665 566 88999999998766 66788776432 224
Q ss_pred EEEEcEEEEccCCCCCCc
Q 013303 152 EETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 152 ~~~~d~VVvAtG~~s~p~ 169 (446)
++++|.||.|+|.+|.-+
T Consensus 167 ~i~adlvIgADG~~S~vR 184 (415)
T PRK07364 167 TLQSKLVVAADGARSPIR 184 (415)
T ss_pred EEeeeEEEEeCCCCchhH
Confidence 799999999999877543
No 118
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.15 E-value=1.7e-10 Score=114.55 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=88.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCccCC-ccCceeecCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSS-LYKSLRVNLPR 75 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~~~~-~y~~l~~~~~~ 75 (446)
.+||+|||||++||++|..|++.|++|+|||+.+.++.. ....+..- .+..|+.+. +.... ....+......
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~--~~~~~~~~~~~~~~~~~ 81 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEA--ARQRAVFTDHLTMMDAV 81 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHH--HHhhccCCcceEEEeCC
Confidence 569999999999999999999999999999998765311 10000000 000111000 00000 00111100000
Q ss_pred CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~ 154 (446)
..-.+..+++...............++.++.+.|.+.+.+.+ +. ++++++|+++...+ +.++|++.++. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~g~----~~~ 154 (396)
T PRK08163 82 DAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDG-DGVTVFDQQGN----RWT 154 (396)
T ss_pred CCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCC-CceEEEEcCCC----EEe
Confidence 000000011100000000001112467888888888877664 55 88999999998765 66777765543 689
Q ss_pred EcEEEEccCCCCCCc
Q 013303 155 FDAVVVCNGHFSVPR 169 (446)
Q Consensus 155 ~d~VVvAtG~~s~p~ 169 (446)
+|.||.|+|.+|..+
T Consensus 155 ad~vV~AdG~~S~~r 169 (396)
T PRK08163 155 GDALIGCDGVKSVVR 169 (396)
T ss_pred cCEEEECCCcChHHH
Confidence 999999999876554
No 119
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.15 E-value=1.5e-10 Score=112.86 Aligned_cols=157 Identities=24% Similarity=0.201 Sum_probs=88.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC----ceeeeCCCCC-CCCCCCCCCCCCcc-C--CccCceeecCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----GSWIYTSETE-SDPLGVDPNRYPVH-S--SLYKSLRVNLP 74 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G----G~w~~~~~~~-~~~~g~~p~~~~~~-~--~~y~~l~~~~~ 74 (446)
+||+||||||+|+++|..|++.|++|+|||+.+.+. |......... ....|... .+.. . ...........
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~--~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLD--EILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHH--HHHHHSEEECEEEEEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchh--hhhhhcccccceeeEeecc
Confidence 689999999999999999999999999999976541 1111000000 00000000 0000 0 00000000000
Q ss_pred -CC-------CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303 75 -RE-------LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (446)
Q Consensus 75 -~~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~ 146 (446)
.. .....++.... .........+.++.+.|.+.+++.++. ++++++|+++..+. +..++.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~-~~~~~~~~~~ 151 (356)
T PF01494_consen 80 ISDSRIWVENPQIREDMEIDT-----KGPYGHVIDRPELDRALREEAEERGVD--IRFGTRVVSIEQDD-DGVTVVVRDG 151 (356)
T ss_dssp TTTSEEEEEEEEEEEECHSTS-----GSSCEEEEEHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEET-TEEEEEEEET
T ss_pred cCCccceeeecccceeeeccc-----cCCcchhhhHHHHHHhhhhhhhhhhhh--heeeeecccccccc-cccccccccc
Confidence 00 00000000000 001122346788999999999999977 99999999998877 6666666665
Q ss_pred -CCceEEEEEcEEEEccCCCCCCc
Q 013303 147 -DDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 147 -~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
++..+++++|.||.|.|.+|.-+
T Consensus 152 ~~g~~~~i~adlvVgADG~~S~vR 175 (356)
T PF01494_consen 152 EDGEEETIEADLVVGADGAHSKVR 175 (356)
T ss_dssp CTCEEEEEEESEEEE-SGTT-HHH
T ss_pred cCCceeEEEEeeeecccCcccchh
Confidence 35556899999999999877544
No 120
>PRK07045 putative monooxygenase; Reviewed
Probab=99.14 E-value=2.8e-10 Score=112.69 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=86.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc---CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
++||+||||||+|+++|..|++.|++|+|+|+.+.+ ++.-...+... .+..|+..............+.......
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 369999999999999999999999999999998754 11100100000 0011111000000000111111111111
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEE
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEET 154 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~ 154 (446)
... .+++... .........++.++.+.|.+.+... +++ ++++++|+.++..+++. +.|+..++. ++.
T Consensus 85 ~~~--~~~~~~~---~~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~----~~~ 153 (388)
T PRK07045 85 LIA--SLDYRSA---SALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDGE----RVA 153 (388)
T ss_pred EEE--EecCCcc---ccCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCCC----EEE
Confidence 111 1111110 0001112245677888887776543 565 99999999998866342 456665443 789
Q ss_pred EcEEEEccCCCCCCc
Q 013303 155 FDAVVVCNGHFSVPR 169 (446)
Q Consensus 155 ~d~VVvAtG~~s~p~ 169 (446)
+|.||.|.|.+|.-+
T Consensus 154 ~~~vIgADG~~S~vR 168 (388)
T PRK07045 154 PTVLVGADGARSMIR 168 (388)
T ss_pred CCEEEECCCCChHHH
Confidence 999999999877544
No 121
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.14 E-value=1.6e-10 Score=102.88 Aligned_cols=149 Identities=24% Similarity=0.330 Sum_probs=87.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC-CCCCC---CCCCC-C---ccCCccCceeecC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-DPLGV---DPNRY-P---VHSSLYKSLRVNL 73 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~-~~~g~---~p~~~-~---~~~~~y~~l~~~~ 73 (446)
+.+|+|||+|++|++||..|+..|.+|+||||+..+||........+. -..|. +|.-. + ++.-.-+.+..--
T Consensus 1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 357999999999999999999999999999999999987654321110 00111 11100 0 0000001111111
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~ 153 (446)
...+.+|.+-..++... ......-|....+.+||.. ++. |+++++|+.|.+.+ +.|+++.+++. ...
T Consensus 81 ~~~~~~~~~~~~~~~~d--~~pyvg~pgmsalak~LAt-----dL~--V~~~~rVt~v~~~~-~~W~l~~~~g~---~~~ 147 (331)
T COG3380 81 TPAVWTFTGDGSPPRGD--EDPYVGEPGMSALAKFLAT-----DLT--VVLETRVTEVARTD-NDWTLHTDDGT---RHT 147 (331)
T ss_pred cccccccccCCCCCCCC--CCccccCcchHHHHHHHhc-----cch--hhhhhhhhhheecC-CeeEEEecCCC---ccc
Confidence 11122222111111100 0002223455666665544 455 88999999999886 89999997765 367
Q ss_pred EEcEEEEccC
Q 013303 154 TFDAVVVCNG 163 (446)
Q Consensus 154 ~~d~VVvAtG 163 (446)
.||.||||.=
T Consensus 148 ~~d~vvla~P 157 (331)
T COG3380 148 QFDDVVLAIP 157 (331)
T ss_pred ccceEEEecC
Confidence 8999999976
No 122
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.14 E-value=1.3e-10 Score=114.99 Aligned_cols=150 Identities=25% Similarity=0.366 Sum_probs=89.5
Q ss_pred EEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCC-CCCCCC--CCc---cCCccCceeecCCCCCcc
Q 013303 6 AVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL-GVDPNR--YPV---HSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 6 ~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~-g~~p~~--~~~---~~~~y~~l~~~~~~~~~~ 79 (446)
+|||||+|||+||..|++.|++|+|+|+++.+|+.+........... ...... ... ...++..+....+.+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 69999999999999999999999999999988876543322110000 000000 000 000000010001111111
Q ss_pred cC---CCCCCcCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303 80 FQ---AYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (446)
Q Consensus 80 ~~---d~~~~~~~~~~~~~~~~~~---~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~ 153 (446)
|- ..++... .....|| ...++.+.+.+.+++.++. ++++++|+++...+ +.|.|++. + .++
T Consensus 81 ~~~~~Gv~~~~~-----~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~-~~~~v~~~-~----~~i 147 (400)
T TIGR00275 81 FFESLGLELKVE-----EDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDD-NGFGVETS-G----GEY 147 (400)
T ss_pred HHHHcCCeeEEe-----cCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecC-CeEEEEEC-C----cEE
Confidence 10 0111110 0122333 4578999999999999887 99999999998765 66777662 2 268
Q ss_pred EEcEEEEccCCCCCC
Q 013303 154 TFDAVVVCNGHFSVP 168 (446)
Q Consensus 154 ~~d~VVvAtG~~s~p 168 (446)
.+|.||+|+|.++.|
T Consensus 148 ~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 148 EADKVILATGGLSYP 162 (400)
T ss_pred EcCEEEECCCCcccC
Confidence 999999999986654
No 123
>PRK09126 hypothetical protein; Provisional
Probab=99.13 E-value=6.4e-10 Score=110.28 Aligned_cols=152 Identities=22% Similarity=0.229 Sum_probs=83.6
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC-------c-eeeeCCCCC--CCCCCCCCCCCCccC--CccCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-------G-SWIYTSETE--SDPLGVDPNRYPVHS--SLYKS 68 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-------G-~w~~~~~~~--~~~~g~~p~~~~~~~--~~y~~ 68 (446)
|.+||+||||||+|+++|..|++.|++|+|+|+.+.+. | .....+... .+..|.... +... .....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~--~~~~~~~~~~~ 79 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDR--IPEDEISPLRD 79 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhh--hccccCCccce
Confidence 46799999999999999999999999999999986531 1 000000000 000011000 0000 00011
Q ss_pred eeecCCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCcEEeCeEEEEEEEcCCCceEEEEEe
Q 013303 69 LRVNLPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-EFGVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (446)
Q Consensus 69 l~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~-~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~ 145 (446)
....... ..+.+ +.... .........++..+.+.|.+.+. ..++. ++++++|++++..+ +.+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~---~~~~~---~~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~-~~~~v~~~~ 150 (392)
T PRK09126 80 AKVLNGRSPFALTF---DARGR---GADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD-DGAQVTLAN 150 (392)
T ss_pred EEEEcCCCCceeEe---ehhhc---CCCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC-CeEEEEEcC
Confidence 1100000 01111 10000 00001112345566666655553 34676 99999999998765 667787765
Q ss_pred CCCceEEEEEcEEEEccCCCCC
Q 013303 146 KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 146 ~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+. ++.+|.||.|+|.+|.
T Consensus 151 g~----~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 151 GR----RLTARLLVAADSRFSA 168 (392)
T ss_pred CC----EEEeCEEEEeCCCCch
Confidence 43 7999999999996554
No 124
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.12 E-value=4.7e-10 Score=110.91 Aligned_cols=157 Identities=23% Similarity=0.233 Sum_probs=93.3
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCc---CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP 74 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~---GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~ 74 (446)
+++||+||||||+||++|..|++.|++|+|||+. ... |-.....+..- ....|+.+.-.......+........
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 80 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG 80 (387)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence 4689999999999999999999999999999997 221 10000000000 01122210000001112222222111
Q ss_pred CC-CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303 75 RE-LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (446)
Q Consensus 75 ~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~ 152 (446)
.. ...+...... ........+..++...|.+.+...+ ++ ++++++|+.++..+ +..++++.. +++ +
T Consensus 81 ~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~-~~v~v~l~~-dG~--~ 148 (387)
T COG0654 81 GRRLLIFDAAELG------RGALGYVVPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDG-DGVTVTLSF-DGE--T 148 (387)
T ss_pred CceeEEecccccC------CCcceEEeEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcC-CceEEEEcC-CCc--E
Confidence 11 1111111110 0012233577899999999998876 66 99999999999887 667788873 322 8
Q ss_pred EEEcEEEEccCCCCCCc
Q 013303 153 ETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~p~ 169 (446)
+.+|.||.|.|.+|.-+
T Consensus 149 ~~a~llVgADG~~S~vR 165 (387)
T COG0654 149 LDADLLVGADGANSAVR 165 (387)
T ss_pred EecCEEEECCCCchHHH
Confidence 99999999999877543
No 125
>PRK08013 oxidoreductase; Provisional
Probab=99.12 E-value=7.6e-10 Score=109.99 Aligned_cols=153 Identities=20% Similarity=0.108 Sum_probs=89.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC--CCCC---------CCCCCCCCCCCCcc--CCccCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT--SETE---------SDPLGVDPNRYPVH--SSLYKS 68 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~--~~~~---------~~~~g~~p~~~~~~--~~~y~~ 68 (446)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+.-..... .+.. .+..|+-.. +.. ...+..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~--~~~~~~~~~~~ 80 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQD--ILARRASCYHG 80 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchh--hhhhcCccccE
Confidence 4699999999999999999999999999999987532100000 0000 000111000 000 011111
Q ss_pred eeecCCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEe
Q 013303 69 LRVNLPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (446)
Q Consensus 69 l~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~ 145 (446)
+....+. ..+.+....... .......++..+.+.|.+.+... +++ ++++++|++++..+ +..+|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~ 151 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMGY------SHLGHIIENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGE-NEAFLTLKD 151 (400)
T ss_pred EEEEeCCCCceEEEcccccCC------CccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeEEEEEcC
Confidence 1111111 001111000000 00112356778888888888775 566 89999999998766 667777765
Q ss_pred CCCceEEEEEcEEEEccCCCCCCc
Q 013303 146 KDDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 146 ~~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
+. ++++|.||.|.|.+|.-+
T Consensus 152 g~----~i~a~lvVgADG~~S~vR 171 (400)
T PRK08013 152 GS----MLTARLVVGADGANSWLR 171 (400)
T ss_pred CC----EEEeeEEEEeCCCCcHHH
Confidence 43 799999999999877544
No 126
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.12 E-value=2.2e-10 Score=114.01 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=88.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCc-----eeeeCCCC-C-CCCCCCCCCCCCccCCccCceeec
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGG-----SWIYTSET-E-SDPLGVDPNRYPVHSSLYKSLRVN 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG-----~w~~~~~~-~-~~~~g~~p~~~~~~~~~y~~l~~~ 72 (446)
++||+||||||+|+++|..|++.| ++|+|||+.+.... .....+.. . .+..|+..... ........+...
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~-~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIA-PEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhh-hhcCcccEEEEE
Confidence 479999999999999999999985 99999999764210 00000000 0 00011100000 000001111110
Q ss_pred CCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303 73 LPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (446)
Q Consensus 73 ~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~ 150 (446)
... .......+.+.... ..........++..+.+.|.+.+.+.++. ++++++|++++..+ +.+.|++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~--- 152 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEV-EPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRD-EGVTVTLSDGS--- 152 (403)
T ss_pred eCCCCCCCccceEEecccc-cCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CEEEEEECCCC---
Confidence 000 00000000110000 00000112357789999999999888887 99999999998766 66777765543
Q ss_pred EEEEEcEEEEccCCCCC
Q 013303 151 EEETFDAVVVCNGHFSV 167 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~ 167 (446)
++.+|.||.|+|.+|.
T Consensus 153 -~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 153 -VLEARLLVAADGARSK 168 (403)
T ss_pred -EEEeCEEEEcCCCChH
Confidence 6899999999996554
No 127
>PRK06184 hypothetical protein; Provisional
Probab=99.12 E-value=1.4e-09 Score=111.31 Aligned_cols=161 Identities=20% Similarity=0.197 Sum_probs=88.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee---eCCCC-C-CCCCCCCCCCCCc-cCCccCceeecCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI---YTSET-E-SDPLGVDPNRYPV-HSSLYKSLRVNLPR 75 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~---~~~~~-~-~~~~g~~p~~~~~-~~~~y~~l~~~~~~ 75 (446)
..||+||||||+||++|..|++.|++|+|||+.+.+...-. ..++. . ....|.... +. ....+.......+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~--l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDR--VVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHH--HHhcCccccceeEEeCC
Confidence 57999999999999999999999999999999865421000 00000 0 000111000 00 00001111100000
Q ss_pred C-CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303 76 E-LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (446)
Q Consensus 76 ~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~ 154 (446)
. ........................+...+.+.|.+.+.+.++. ++++++|++++..+ +.+++++....+ ..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~~-~~~i~ 156 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHR--VEFGCELVGFEQDA-DGVTARVAGPAG-EETVR 156 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcC-CcEEEEEEeCCC-eEEEE
Confidence 0 0000000000000000000112234566777888888888877 99999999998776 667777644222 34799
Q ss_pred EcEEEEccCCCCCC
Q 013303 155 FDAVVVCNGHFSVP 168 (446)
Q Consensus 155 ~d~VVvAtG~~s~p 168 (446)
+|+||.|+|.+|.-
T Consensus 157 a~~vVgADG~~S~v 170 (502)
T PRK06184 157 ARYLVGADGGRSFV 170 (502)
T ss_pred eCEEEECCCCchHH
Confidence 99999999987643
No 128
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.12 E-value=5.7e-10 Score=109.61 Aligned_cols=134 Identities=22% Similarity=0.309 Sum_probs=87.7
Q ss_pred eEEEECcChHHHHHHHHH--HHCCCcEEEEeeCCCc--Cc--eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303 4 HVAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQV--GG--SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l--~~~g~~v~v~e~~~~~--GG--~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~ 77 (446)
||+||||||||+++|.+| ++.|.+|+|+|+.... .. +|.+..... + + ........|+......+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~----~--~-~~~~v~~~w~~~~v~~~~~~ 73 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDL----G--P-LDSLVSHRWSGWRVYFPDGS 73 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccc----c--c-hHHHHheecCceEEEeCCCc
Confidence 799999999999999999 7779999999998766 22 333321100 0 0 00011223333332222222
Q ss_pred cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~ 157 (446)
....+++ .....+..+.+++.+.+...+ . +.++++|.+|+..+ +.+.|++.++. +++++.
T Consensus 74 ~~~~~~~------------Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~-~~~~v~~~~g~----~i~a~~ 133 (374)
T PF05834_consen 74 RILIDYP------------YCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG-DGVLVVLADGR----TIRARV 133 (374)
T ss_pred eEEcccc------------eEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC-ceEEEEECCCC----EEEeeE
Confidence 1111111 123577899999988888444 3 78899999999887 56777777765 899999
Q ss_pred EEEccCC
Q 013303 158 VVVCNGH 164 (446)
Q Consensus 158 VVvAtG~ 164 (446)
||-|+|.
T Consensus 134 VvDa~g~ 140 (374)
T PF05834_consen 134 VVDARGP 140 (374)
T ss_pred EEECCCc
Confidence 9999994
No 129
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.11 E-value=7.1e-10 Score=109.83 Aligned_cols=151 Identities=18% Similarity=0.107 Sum_probs=85.6
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc---eeeeC-----CCCC--CCCCCCCCCCCCccCC--ccCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYT-----SETE--SDPLGVDPNRYPVHSS--LYKS 68 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG---~w~~~-----~~~~--~~~~g~~p~~~~~~~~--~y~~ 68 (446)
|..||+||||||+|+++|..|++.|++|+|+|+.+.+.. .|... +... .+..|.... +.... ....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~--~~~~~~~~~~~ 81 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQA--LDAARLAPVYD 81 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhh--hhhhcCCcceE
Confidence 467999999999999999999999999999999876421 11100 0000 000010000 00000 0000
Q ss_pred eeecCCC-CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303 69 LRVNLPR-ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (446)
Q Consensus 69 l~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~ 146 (446)
+...... ..+.+..+.... ........+..+.+.|.+.+++.+ +. +. +++|+++...+ +.+.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~-~~~~v~~~~g 151 (388)
T PRK07608 82 MRVFGDAHARLHFSAYQAGV------PQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDP-DAATLTLADG 151 (388)
T ss_pred EEEEECCCceeEeeccccCC------CCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecC-CeEEEEECCC
Confidence 1000000 000110000000 000112356788888888888776 55 55 88999998765 6688777654
Q ss_pred CCceEEEEEcEEEEccCCCCC
Q 013303 147 DDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 147 ~~~~~~~~~d~VVvAtG~~s~ 167 (446)
. ++.+|.||.|+|.+|.
T Consensus 152 ~----~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 Q----VLRADLVVGADGAHSW 168 (388)
T ss_pred C----EEEeeEEEEeCCCCch
Confidence 3 6899999999997664
No 130
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.11 E-value=6.8e-10 Score=111.24 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=85.9
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----CceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
|++||+||||||||+++|..|++.|++|+|+|+.... ||..... ..+..+.... .+. .....++...|..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~---~l~~lgl~~~--~~~-~~i~~~~~~~p~~ 111 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLC---MVGEFDLPLD--IID-RKVTKMKMISPSN 111 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---HHhhhcCcHH--HHH-HHhhhheEecCCc
Confidence 4689999999999999999999999999999987431 2211000 0000111000 000 0011111111111
Q ss_pred CcccCCCCCCcCCCCCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcC--CCceEEEEEeC-----C
Q 013303 77 LMGFQAYPFVARNYEGSVDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-----D 147 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~--~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~--~~~~~v~~~~~-----~ 147 (446)
. . .+++... ..... ..++..+.++|.+.+.+.|++ ++.+ +|.+++... ++.+.|++.+. .
T Consensus 112 ~-~-v~~~~~~------~~~~~~~~v~R~~~d~~L~~~A~~~Ga~--~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~ 180 (450)
T PLN00093 112 V-A-VDIGKTL------KPHEYIGMVRREVLDSFLRERAQSNGAT--LING-LFTRIDVPKDPNGPYVIHYTSYDSGSGA 180 (450)
T ss_pred e-E-EEecccC------CCCCeEEEecHHHHHHHHHHHHHHCCCE--EEec-eEEEEEeccCCCCcEEEEEEeccccccC
Confidence 0 0 0011000 00111 258899999999999998887 6554 577776422 24577776542 1
Q ss_pred CceEEEEEcEEEEccCCCCC
Q 013303 148 DVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 148 ~~~~~~~~d~VVvAtG~~s~ 167 (446)
++..++.+|.||.|+|.+|.
T Consensus 181 g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 181 GTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred CCccEEEeCEEEEcCCcchH
Confidence 33357999999999997654
No 131
>PRK06753 hypothetical protein; Provisional
Probab=99.11 E-value=6.6e-10 Score=109.45 Aligned_cols=149 Identities=18% Similarity=0.231 Sum_probs=86.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLPRE 76 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG---~w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~~~ 76 (446)
++|+||||||+|+++|..|++.|++|+|+|+.+.+.. .+...+..- .+..|+... +. .......+....+..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~--~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG--IKNAGQILSTMNLLDDKG 78 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHH--HHhcCCcccceeEEcCCC
Confidence 4899999999999999999999999999999875421 111100000 000111000 00 000111111111111
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d 156 (446)
. .+...++... ......++..+.+.|.+.+.. . .++++++|++|+..+ +.++|++.++. ++.+|
T Consensus 79 ~-~~~~~~~~~~------~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~~ 142 (373)
T PRK06753 79 T-LLNKVKLKSN------TLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENET-DKVTIHFADGE----SEAFD 142 (373)
T ss_pred C-EEeecccccC------CccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecC-CcEEEEECCCC----EEecC
Confidence 0 0111111110 112235778888888776653 2 389999999998765 77888876653 68999
Q ss_pred EEEEccCCCCCCc
Q 013303 157 AVVVCNGHFSVPR 169 (446)
Q Consensus 157 ~VVvAtG~~s~p~ 169 (446)
.||.|.|.+|.-+
T Consensus 143 ~vigadG~~S~vR 155 (373)
T PRK06753 143 LCIGADGIHSKVR 155 (373)
T ss_pred EEEECCCcchHHH
Confidence 9999999876544
No 132
>PRK07588 hypothetical protein; Provisional
Probab=99.10 E-value=4e-10 Score=111.68 Aligned_cols=157 Identities=16% Similarity=0.107 Sum_probs=87.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc---CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~~ 77 (446)
+||+|||||++|+++|..|++.|++|+|+|+.+.. |..+...+..- .+..|+-.. ..........+.......
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~-l~~~~~~~~~~~~~~~~g- 78 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQ-LREAGYQIEHVRSVDPTG- 78 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHH-HHhccCCccceEEEcCCC-
Confidence 48999999999999999999999999999987654 22222211100 000111000 000000111111111110
Q ss_pred cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (446)
Q Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~ 157 (446)
..+..+++...... ........++.++.+.|.+.+.. +++ ++++++|++++..+ +.++|+++++. ++.+|.
T Consensus 79 ~~~~~~~~~~~~~~-~g~~~~~i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~d~ 149 (391)
T PRK07588 79 RRKADLNVDSFRRM-VGDDFTSLPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHR-DGVRVTFERGT----PRDFDL 149 (391)
T ss_pred CEEEEecHHHcccc-CCCceEEEEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECC-CeEEEEECCCC----EEEeCE
Confidence 00011111100000 00011234567777777664432 455 99999999998776 67888877654 678999
Q ss_pred EEEccCCCCCCcc
Q 013303 158 VVVCNGHFSVPRL 170 (446)
Q Consensus 158 VVvAtG~~s~p~~ 170 (446)
||.|.|.+|.-+.
T Consensus 150 vIgADG~~S~vR~ 162 (391)
T PRK07588 150 VIGADGLHSHVRR 162 (391)
T ss_pred EEECCCCCccchh
Confidence 9999998775543
No 133
>PRK06126 hypothetical protein; Provisional
Probab=99.10 E-value=2.9e-09 Score=110.11 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=88.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCC---CCCccCCccCc-eeec
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPN---RYPVHSSLYKS-LRVN 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~---~~~~~~~~y~~-l~~~ 72 (446)
.++|+||||||+||++|..|++.|++|+|||+.+.+.-. ....++.- ....|+... ........... ....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 469999999999999999999999999999987643100 00000000 000111000 00000000000 0000
Q ss_pred -CCCCCccc--CCC----CCCcCCC-C-CCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303 73 -LPRELMGF--QAY----PFVARNY-E-GSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVK 142 (446)
Q Consensus 73 -~~~~~~~~--~d~----~~~~~~~-~-~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~ 142 (446)
....+..+ ... .+..... . .........+...+.+.|.+.+.+. ++. ++++++|++++..+ +..+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~ 163 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDA-DGVTAT 163 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECC-CeEEEE
Confidence 00001000 000 0000000 0 0000112345677888888888765 666 99999999998776 567777
Q ss_pred EEeC-CCceEEEEEcEEEEccCCCCCC
Q 013303 143 SRKK-DDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 143 ~~~~-~~~~~~~~~d~VVvAtG~~s~p 168 (446)
+.+. +++..++.+|+||.|+|.+|.-
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchHH
Confidence 7652 3445679999999999987753
No 134
>PRK07538 hypothetical protein; Provisional
Probab=99.10 E-value=1.9e-09 Score=107.60 Aligned_cols=160 Identities=18% Similarity=0.103 Sum_probs=87.4
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCcc-CCccCceeecCCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPRE 76 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~--~~~~g~~p~~~~~~-~~~y~~l~~~~~~~ 76 (446)
+||+|||||++||++|..|++.|++|+|||+.+.+. ......+..- ....|+... +.. ......+....+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~--l~~~~~~~~~~~~~~~~g 78 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDA--LDAIGIRTRELAYFNRHG 78 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHH--HHhhCCCCcceEEEcCCC
Confidence 489999999999999999999999999999987542 1111110000 000111000 000 00001111101100
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEE
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEET 154 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~ 154 (446)
..-+. .+.... .........+++.++.+.|.+.+.+ .+. ..++++++|++++..+ +...+.+.++. ++..++.
T Consensus 79 ~~~~~-~~~~~~--~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~~ 153 (413)
T PRK07538 79 QRIWS-EPRGLA--AGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA-DVTVVFLGDRAGGDLVSVR 153 (413)
T ss_pred CEEee-ccCCcc--cCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC-CceEEEEeccCCCccceEE
Confidence 00000 000000 0000011225778888888777654 453 2389999999998766 44566665532 3446899
Q ss_pred EcEEEEccCCCCCCc
Q 013303 155 FDAVVVCNGHFSVPR 169 (446)
Q Consensus 155 ~d~VVvAtG~~s~p~ 169 (446)
+|.||.|.|.+|.-+
T Consensus 154 adlvIgADG~~S~vR 168 (413)
T PRK07538 154 GDVLIGADGIHSAVR 168 (413)
T ss_pred eeEEEECCCCCHHHh
Confidence 999999999877544
No 135
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.09 E-value=5e-10 Score=110.71 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----Ccee-----eeCCCCC--CCCCCCCCCCCCccCCccCcee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSW-----IYTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w-----~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~ 70 (446)
.+||+||||||+|+++|..|++.|++|+|||+.+.. .|.+ ...+..- .+..|.-+.........+..+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 469999999999999999999999999999986411 1000 0000000 0001111000000000111111
Q ss_pred e-cCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 71 V-NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 71 ~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
. ........|........ .......+..+...|.+.+... ++. ++++++|++++..+ +.++|++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~------~~g~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~-~~~~v~~~~g~- 152 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLD------QLGYIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSA-EGNRVTLESGA- 152 (384)
T ss_pred EEeCCCceEEecccccCCC------ccEEEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcC-CeEEEEECCCC-
Confidence 0 00000011110000000 0011233455666666655554 455 89999999998876 66788887653
Q ss_pred ceEEEEEcEEEEccCCCCCCc
Q 013303 149 VVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~ 169 (446)
++++|.||.|+|.+|.-+
T Consensus 153 ---~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 153 ---EIEAKWVIGADGANSQVR 170 (384)
T ss_pred ---EEEeeEEEEecCCCchhH
Confidence 799999999999877544
No 136
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.09 E-value=2.1e-10 Score=113.40 Aligned_cols=149 Identities=12% Similarity=0.086 Sum_probs=85.7
Q ss_pred eEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCc--------eeeeCCCC-CCCCCCCCCCCCCccCCccCceeecC
Q 013303 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGG--------SWIYTSET-ESDPLGVDPNRYPVHSSLYKSLRVNL 73 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG--------~w~~~~~~-~~~~~g~~p~~~~~~~~~y~~l~~~~ 73 (446)
||+||||||+|+++|..|++.| ++|+|+|+.+.+.- ........ ..+..|+...... ............
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~-~~~~~~~~~~~~ 79 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAP-FATPILDIHVSD 79 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHh-hcCccceEEEEc
Confidence 7999999999999999999999 99999999764311 00000000 0001111100000 000000111000
Q ss_pred C--CCCcccCCCCCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 74 P--RELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 74 ~--~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
. .....+ +.... ..... ...++.++.+.|.+.+... +++ ++++++|+++...+ +.++|++.++.
T Consensus 80 ~~~~~~~~~---~~~~~----~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~g~-- 147 (382)
T TIGR01984 80 QGHFGATHL---RASEF----GLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQ-DYVRVTLDNGQ-- 147 (382)
T ss_pred CCCCceEEe---chhhc----CCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcC-CeEEEEECCCC--
Confidence 0 000000 00000 00011 1246688888998888874 777 88999999998776 67888775543
Q ss_pred eEEEEEcEEEEccCCCCC
Q 013303 150 VEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~ 167 (446)
++.+|.||.|.|.+|.
T Consensus 148 --~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 148 --QLRAKLLIAADGANSK 163 (382)
T ss_pred --EEEeeEEEEecCCChH
Confidence 6899999999997664
No 137
>PRK07236 hypothetical protein; Provisional
Probab=99.09 E-value=1.3e-09 Score=107.72 Aligned_cols=146 Identities=19% Similarity=0.147 Sum_probs=80.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~ 75 (446)
.++|+|||||++||++|..|++.|++|+|||+.+.. |+.....+... .+..|+.+... ..............
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~--~~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPAD--IGVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccc--cccCccceEEEeCC
Confidence 579999999999999999999999999999997632 21111110000 00011111000 00000000000000
Q ss_pred CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~ 155 (446)
.. .+...+. ......+..+.+.|.+ .+. ...++++++|++++..+ +.++|++.++. ++.+
T Consensus 84 g~-~~~~~~~----------~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a 143 (386)
T PRK07236 84 GR-VVQRRPM----------PQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG-DRVTARFADGR----RETA 143 (386)
T ss_pred CC-EeeccCC----------CccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC-CeEEEEECCCC----EEEe
Confidence 00 0000111 0112244555555543 222 12389999999998776 66888877654 7899
Q ss_pred cEEEEccCCCCCCc
Q 013303 156 DAVVVCNGHFSVPR 169 (446)
Q Consensus 156 d~VVvAtG~~s~p~ 169 (446)
|.||.|.|.+|..+
T Consensus 144 d~vIgADG~~S~vR 157 (386)
T PRK07236 144 DLLVGADGGRSTVR 157 (386)
T ss_pred CEEEECCCCCchHH
Confidence 99999999877654
No 138
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.09 E-value=9.1e-10 Score=109.05 Aligned_cols=155 Identities=22% Similarity=0.181 Sum_probs=85.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc--eeeeCCCC-C-CCCCCCCCCCCCccCCccCceeecCCCC-C
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG--SWIYTSET-E-SDPLGVDPNRYPVHSSLYKSLRVNLPRE-L 77 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG--~w~~~~~~-~-~~~~g~~p~~~~~~~~~y~~l~~~~~~~-~ 77 (446)
+||+|||||++|+++|..|++.|++|+|||+.+..+. .+...... . .+..|.-+.. ......+..+....+.. .
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~-~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARL-APHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhh-HhhcceeeEEEEEeCCCCC
Confidence 5899999999999999999999999999999864421 00000000 0 0000110000 00000111111111110 0
Q ss_pred cccCCCCCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303 78 MGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 78 ~~~~d~~~~~~~~~~~~~~-~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d 156 (446)
...+...+... +..... ....++..+.+.|.+.+.+++.. .+++++|++++..+ +.|+|++.++. ++.+|
T Consensus 87 ~~~~~~~~~~~--~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~a~ 157 (388)
T PRK07494 87 IRAPEVRFRAA--EIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPRE-DEVTVTLADGT----TLSAR 157 (388)
T ss_pred CCCceEEEcHH--hcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcC-CeEEEEECCCC----EEEEe
Confidence 00000000000 000001 11246678888888888776543 47899999998766 77888776543 78999
Q ss_pred EEEEccCCCCC
Q 013303 157 AVVVCNGHFSV 167 (446)
Q Consensus 157 ~VVvAtG~~s~ 167 (446)
.||.|+|.+|.
T Consensus 158 ~vI~AdG~~S~ 168 (388)
T PRK07494 158 LVVGADGRNSP 168 (388)
T ss_pred EEEEecCCCch
Confidence 99999997664
No 139
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.07 E-value=2.3e-09 Score=105.71 Aligned_cols=82 Identities=18% Similarity=0.081 Sum_probs=54.8
Q ss_pred EEEEecCCcHHHHH-HHHh----ccCCEEEEEEecCCc-------ccc-ccCCCC-CCeeeccceeEEccCC-cE---Ee
Q 013303 200 VILIGHYASGLDIK-RDLA----GFAKEVHIASRSVAD-------ETH-EKQPGY-DNMWLHSMVERANEDG-TV---VF 261 (446)
Q Consensus 200 VvVVG~G~sg~eia-~~l~----~~~~~V~l~~r~~~~-------~~~-~~~~~~-~~v~~~~~v~~i~~~~-~v---~~ 261 (446)
=+|++.+..|+|.+ ..++ +.|.+|+++.+.++. +.+ +.+.+. ..+.....|.+++.++ .+ ..
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~ 297 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWT 297 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 37789999999998 5554 469999999877651 111 222222 3566677888876432 22 23
Q ss_pred cCCc--EEeecEEEEecCccCC
Q 013303 262 RNGR--VVSADVIMHCTGYKYN 281 (446)
Q Consensus 262 ~dG~--~~~~D~vi~atG~~~~ 281 (446)
.+|+ .+++|.||+|||..++
T Consensus 298 ~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 298 RNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred eCCceEEEECCEEEEeCCCccc
Confidence 4554 3789999999998765
No 140
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.07 E-value=1.6e-09 Score=107.76 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=89.7
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc---CceeeeCCCCC--CCCCCCCCCCCCcc-CCccCceeecCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV---GGSWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLP 74 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~w~~~~~~~--~~~~g~~p~~~~~~-~~~y~~l~~~~~ 74 (446)
|.++|+|||||++||++|..|++.|++|+|+|+.+.+ |......+... ....|..+. +.. ......+.....
T Consensus 1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~--l~~~~~~~~~~~~~~g 78 (400)
T PRK06475 1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADR--LSGTGVTPKALYLMDG 78 (400)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHH--HhhcccCcceEEEecC
Confidence 5689999999999999999999999999999998754 21111111000 000111000 000 000000000000
Q ss_pred CCCcccCCCCCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303 75 RELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (446)
Q Consensus 75 ~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~ 152 (446)
..........+..... .....+ ...++.++.+.|.+.+... ++. ++++++|++++..+ +.++|++.++.+ ..+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~-~~v~v~~~~~~~-~~~ 153 (400)
T PRK06475 79 RKARPLLAMQLGDLAR-KRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG-NSITATIIRTNS-VET 153 (400)
T ss_pred CCcceEEEecchhhhh-hcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC-CceEEEEEeCCC-CcE
Confidence 0000000000000000 000011 1246788888888877654 566 89999999998765 678887754332 236
Q ss_pred EEEcEEEEccCCCCCCcc
Q 013303 153 ETFDAVVVCNGHFSVPRL 170 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~p~~ 170 (446)
+.+|.||.|.|.+|.-+.
T Consensus 154 ~~adlvIgADG~~S~vR~ 171 (400)
T PRK06475 154 VSAAYLIACDGVWSMLRA 171 (400)
T ss_pred EecCEEEECCCccHhHHh
Confidence 899999999998876543
No 141
>PRK07190 hypothetical protein; Provisional
Probab=99.06 E-value=1.9e-09 Score=109.27 Aligned_cols=157 Identities=17% Similarity=0.082 Sum_probs=86.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee---eCCCCC--CCCCCCCCCCCCcc-CCccCceeecCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI---YTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPR 75 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~---~~~~~~--~~~~g~~p~~~~~~-~~~y~~l~~~~~~ 75 (446)
.+||+||||||+||++|..|++.|++|+|+|+.+.+...-. ..+..- .+..|.... +.. .............
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~--l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDE--LYPLGKPCNTSSVWANG 82 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHH--HHhhCccceeEEEecCC
Confidence 46999999999999999999999999999999875521100 000000 000010000 000 0000000000000
Q ss_pred CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~ 155 (446)
..+......+... ...........+...+.+.|.+.+.+.|+. ++++++|++++..+ +.+++++.++ .++.+
T Consensus 83 ~~i~~~~~~~~~~-~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~-~~v~v~~~~g----~~v~a 154 (487)
T PRK07190 83 KFISRQSSWWEEL-EGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQ-AGCLTTLSNG----ERIQS 154 (487)
T ss_pred ceEeeccccCccC-CcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeeEEEECCC----cEEEe
Confidence 0000000000000 000000011234567778888888888887 99999999998876 5666666443 27899
Q ss_pred cEEEEccCCCCCC
Q 013303 156 DAVVVCNGHFSVP 168 (446)
Q Consensus 156 d~VVvAtG~~s~p 168 (446)
++||.|+|.+|.-
T Consensus 155 ~~vVgADG~~S~v 167 (487)
T PRK07190 155 RYVIGADGSRSFV 167 (487)
T ss_pred CEEEECCCCCHHH
Confidence 9999999976643
No 142
>PLN02697 lycopene epsilon cyclase
Probab=99.06 E-value=1e-09 Score=111.29 Aligned_cols=137 Identities=19% Similarity=0.202 Sum_probs=84.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
.+||+||||||||+++|..|++.|++|+|+|+...+. |.|... ....|..+ .+ ...|.......+...
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~----l~~lgl~~---~i-~~~w~~~~v~~~~~~- 178 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE----FKDLGLED---CI-EHVWRDTIVYLDDDK- 178 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH----HHhcCcHH---HH-HhhcCCcEEEecCCc-
Confidence 4799999999999999999999999999999864433 333211 00011100 00 011111111111000
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEE-EEeCCCceEEEEEcE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK-SRKKDDVVEEETFDA 157 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~-~~~~~~~~~~~~~d~ 157 (446)
+.. . .......++..+.+.|.+.+.+.++. + ++++|+.+...+ +.+.+. ..++ .++.++.
T Consensus 179 -----~~~-~-----~~~Yg~V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~-~~~~vv~~~dG----~~i~A~l 239 (529)
T PLN02697 179 -----PIM-I-----GRAYGRVSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEAS-DGLRLVACEDG----RVIPCRL 239 (529)
T ss_pred -----eee-c-----cCcccEEcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcC-CcEEEEEEcCC----cEEECCE
Confidence 000 0 00112357788999999988888876 5 688999998765 555543 3333 2799999
Q ss_pred EEEccCCCC
Q 013303 158 VVVCNGHFS 166 (446)
Q Consensus 158 VVvAtG~~s 166 (446)
||+|+|+.+
T Consensus 240 VI~AdG~~S 248 (529)
T PLN02697 240 ATVASGAAS 248 (529)
T ss_pred EEECCCcCh
Confidence 999999876
No 143
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.06 E-value=1.7e-09 Score=111.80 Aligned_cols=155 Identities=20% Similarity=0.258 Sum_probs=88.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCcc-CCccCceeec-CC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVN-LP 74 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~~-~~~y~~l~~~-~~ 74 (446)
..||+||||||+||++|..|++.|++|+|||+.+.+... +...+..- .+..|+... +.. ...+...... ..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~--l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGER--MVDKGVSWNVGKVFLRD 100 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHH--HHhhCceeeceeEEeCC
Confidence 468999999999999999999999999999998755321 11111000 000111100 000 0000000000 00
Q ss_pred CCCcccCCCCCCcCCCCCCCCCC--CCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303 75 RELMGFQAYPFVARNYEGSVDLR--RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (446)
Q Consensus 75 ~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~ 151 (446)
.....+ ++... .....+ ...+...+.++|.+.+.+. ++. ++++++|++++..+ +.+++++.+.++ ..
T Consensus 101 ~~~~~~---~~~~~---~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~ 170 (547)
T PRK08132 101 EEVYRF---DLLPE---PGHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHD-DGVTLTVETPDG-PY 170 (547)
T ss_pred CeEEEe---cCCCC---CCCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcC-CEEEEEEECCCC-cE
Confidence 111111 11100 000011 1145667888888888776 455 99999999998876 667777654332 24
Q ss_pred EEEEcEEEEccCCCCCC
Q 013303 152 EETFDAVVVCNGHFSVP 168 (446)
Q Consensus 152 ~~~~d~VVvAtG~~s~p 168 (446)
++.+|+||.|+|.+|.-
T Consensus 171 ~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 171 TLEADWVIACDGARSPL 187 (547)
T ss_pred EEEeCEEEECCCCCcHH
Confidence 68999999999976653
No 144
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.05 E-value=1.2e-09 Score=108.39 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=85.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----Cceeee-----CCCC-C-CCCCCCCCCCCCccCCccCcee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIY-----TSET-E-SDPLGVDPNRYPVHSSLYKSLR 70 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~-----~~~~-~-~~~~g~~p~~~~~~~~~y~~l~ 70 (446)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. ++.+.. .+.. . .+..|.-+.........+..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 479999999999999999999999999999987521 110000 0000 0 0001110000000000111111
Q ss_pred ec-CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 71 VN-LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 71 ~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
.. .......+....... .......++..+.+.|.+.++.. ++. ++++++|+++...+ +.|.|++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~------~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~- 154 (391)
T PRK08020 85 TWEWETAHVVFDAAELKL------PELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDD-DGWELTLADGE- 154 (391)
T ss_pred EEeCCCCeEEecccccCC------CccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcC-CeEEEEECCCC-
Confidence 10 000001110000000 00011245677888888877766 666 88899999998766 66888776543
Q ss_pred ceEEEEEcEEEEccCCCCC
Q 013303 149 VVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~ 167 (446)
++++|.||.|+|.+|.
T Consensus 155 ---~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 155 ---EIQAKLVIGADGANSQ 170 (391)
T ss_pred ---EEEeCEEEEeCCCCch
Confidence 7899999999997664
No 145
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.03 E-value=3.8e-09 Score=104.70 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=85.8
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc------CceeeeCCCCC-CCCCCCCCCCCCccCCccCceeecC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNL 73 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~------GG~w~~~~~~~-~~~~g~~p~~~~~~~~~y~~l~~~~ 73 (446)
|+.||+||||||+|+++|..|++.|++|+|+|+.+.. ++......... .+..|+.... .-.......+....
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l-~~~~~~~~~~~~~~ 79 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERM-DREGLVHDGIELRF 79 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHH-HhcCCccCcEEEEE
Confidence 5789999999999999999999999999999998641 11111000000 0011110000 00000111111100
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~ 153 (446)
..... .+++.... ........+..++.+.|.+.+...+++ ++++++|++++..+++.-.|++.. +++..++
T Consensus 80 ~g~~~---~~~~~~~~---~~~~~~~~~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~~~~V~~~~-~G~~~~i 150 (392)
T PRK08243 80 DGRRH---RIDLTELT---GGRAVTVYGQTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSDRPYVTYEK-DGEEHRL 150 (392)
T ss_pred CCEEE---Eecccccc---CCceEEEeCcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCCceEEEEEc-CCeEEEE
Confidence 11110 11221110 000011123445666666666667777 999999999976222445566532 3344578
Q ss_pred EEcEEEEccCCCCCCc
Q 013303 154 TFDAVVVCNGHFSVPR 169 (446)
Q Consensus 154 ~~d~VVvAtG~~s~p~ 169 (446)
++|.||.|.|.+|.-+
T Consensus 151 ~ad~vVgADG~~S~vR 166 (392)
T PRK08243 151 DCDFIAGCDGFHGVSR 166 (392)
T ss_pred EeCEEEECCCCCCchh
Confidence 9999999999877654
No 146
>PLN02661 Putative thiazole synthesis
Probab=99.03 E-value=2.5e-09 Score=101.50 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=79.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCc-eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGG-SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG-~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
..||+|||||++|+++|..|++. |++|+|+|+...+|| .|.-.... ....+.... ...+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~---------~~~vv~~~a---------~e~Le 153 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLF---------SAMVVRKPA---------HLFLD 153 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccc---------cccccccHH---------HHHHH
Confidence 46999999999999999999986 899999999988866 55321000 000000000 00000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCc-------eEEEEEeCCC---
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNK-------WKVKSRKKDD--- 148 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~-------~~v~~~~~~~--- 148 (446)
--..+++.. .......+..++.+.|.+.+.+ .++. +..++.|..+...+ +. |.+...++.+
T Consensus 154 ElGV~fd~~-----dgy~vv~ha~e~~stLi~ka~~~~gVk--I~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~ 225 (357)
T PLN02661 154 ELGVPYDEQ-----ENYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSC 225 (357)
T ss_pred HcCCCcccC-----CCeeEecchHHHHHHHHHHHHhcCCCE--EEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCc
Confidence 011233211 0001111334555666665543 5676 88888999887654 32 3332222221
Q ss_pred -ceEEEEEcEEEEccCCCC
Q 013303 149 -VVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 149 -~~~~~~~d~VVvAtG~~s 166 (446)
+...+.+++||+||||..
T Consensus 226 ~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 226 MDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred cceeEEECCEEEEcCCCCC
Confidence 234789999999999743
No 147
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.02 E-value=1.5e-09 Score=106.84 Aligned_cols=151 Identities=11% Similarity=0.139 Sum_probs=88.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-------CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeec
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-------GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-------GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~ 72 (446)
+.||+||||||+|+++|..|++.|++|+|+|+.+.. |......+... .+..|+-.... .....+..+...
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~-~~~~~~~~~~~~ 79 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELE-KFVAEMQDIYVV 79 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHH-hhcCCCcEEEEE
Confidence 479999999999999999999999999999986321 11111110000 00111100000 000111111111
Q ss_pred CCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 73 LPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 73 ~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.+. ....+.. ... .......++.++.+.|.+.+...+ +. ++++++|+++...+ +.++|++.++
T Consensus 80 ~~~g~~~~~~~~---~~~-----~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~~--- 145 (374)
T PRK06617 80 DNKASEILDLRN---DAD-----AVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHN-DYSIIKFDDK--- 145 (374)
T ss_pred ECCCceEEEecC---CCC-----CCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcC-CeEEEEEcCC---
Confidence 111 1111111 000 001123567889999988888775 54 78899999998776 6677777432
Q ss_pred eEEEEEcEEEEccCCCCCCc
Q 013303 150 VEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~ 169 (446)
++++|.||.|.|.+|.-+
T Consensus 146 --~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 146 --QIKCNLLIICDGANSKVR 163 (374)
T ss_pred --EEeeCEEEEeCCCCchhH
Confidence 799999999999877654
No 148
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.02 E-value=5.6e-09 Score=95.06 Aligned_cols=253 Identities=18% Similarity=0.224 Sum_probs=136.1
Q ss_pred CeEEEECcChHHHHHHHHHHHC-C-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE-G-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~-g-~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
.+|+|||||.+|+++|..+.+. | -+|.|+|..+.= .|....+-....++.+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H---------------------------yYQPgfTLvGgGl~~l 92 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH---------------------------YYQPGFTLVGGGLKSL 92 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc---------------------------ccCcceEEeccchhhh
Confidence 5899999999999999998875 4 389999986521 1222222222222222
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
..-.-+. ....|.. ..++++.+++|+- +.-+|.+++++ +|.||++|+
T Consensus 93 ~~srr~~--------a~liP~~---a~wi~ekv~~f~P------------------~~N~v~t~gg~----eIsYdylvi 139 (446)
T KOG3851|consen 93 DSSRRKQ--------ASLIPKG---ATWIKEKVKEFNP------------------DKNTVVTRGGE----EISYDYLVI 139 (446)
T ss_pred hhccCcc--------cccccCC---cHHHHHHHHhcCC------------------CcCeEEccCCc----EEeeeeEee
Confidence 1100000 1112222 2355565655543 23556666664 899999999
Q ss_pred ccCCCCCCccCCCCCCCC-C--CccE-EEeee-----cCCCCCC---------CCCEEEEEecCCcHHHHHHHHh-ccC-
Q 013303 161 CNGHFSVPRLAQVPGIDS-W--PGKQ-MHSHN-----YRIPNPF---------QDQVVILIGHYASGLDIKRDLA-GFA- 220 (446)
Q Consensus 161 AtG~~s~p~~p~i~G~~~-~--~g~~-~hs~~-----~~~~~~~---------~~k~VvVVG~G~sg~eia~~l~-~~~- 220 (446)
|+|. .-+.-.|+|+.+ + ++.. ..|.. |.....| .+..|=.-|+-.-.+=|+.... +.|
T Consensus 140 A~Gi--ql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gv 217 (446)
T KOG3851|consen 140 AMGI--QLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGV 217 (446)
T ss_pred eeec--eeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCc
Confidence 9994 444455666432 1 1110 11111 1111122 2233334455555555555543 333
Q ss_pred -CEEEEEEecCC---------ccccccCCCCCCeeec--cceeEEccCCc-EEecC----CcE--EeecEEEEecCccC-
Q 013303 221 -KEVHIASRSVA---------DETHEKQPGYDNMWLH--SMVERANEDGT-VVFRN----GRV--VSADVIMHCTGYKY- 280 (446)
Q Consensus 221 -~~V~l~~r~~~---------~~~~~~~~~~~~v~~~--~~v~~i~~~~~-v~~~d----G~~--~~~D~vi~atG~~~- 280 (446)
.++.++...+. .+.+.++.+..++.++ .++.++..+++ .+|++ |.+ ++++.+-......+
T Consensus 218 Rd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p 297 (446)
T KOG3851|consen 218 RDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP 297 (446)
T ss_pred cccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh
Confidence 35777766554 2233344444555443 45556654433 44442 543 66888777665543
Q ss_pred ----CCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc
Q 013303 281 ----NYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP 325 (446)
Q Consensus 281 ----~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~ 325 (446)
+.++.+..|++.||.... ..+.+||+|.||++...+.
T Consensus 298 e~l~~s~~adktGfvdVD~~Tl--------Qs~kypNVFgiGDc~n~Pn 338 (446)
T KOG3851|consen 298 EVLANSDLADKTGFVDVDQSTL--------QSKKYPNVFGIGDCMNLPN 338 (446)
T ss_pred hhhhcCcccCcccceecChhhh--------ccccCCCceeeccccCCCc
Confidence 345677888888886543 1244899999998876554
No 149
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.00 E-value=2.4e-10 Score=99.46 Aligned_cols=138 Identities=22% Similarity=0.209 Sum_probs=75.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce-eeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC-Ccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS-WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE-LMG 79 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~-w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~-~~~ 79 (446)
.+||+||||||+||+||+.|++.|++|++||++..+||. |.- ..+|+.+....+.. .+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~G-------------------g~lf~~iVVq~~a~~iL~ 77 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGG-------------------GMLFNKIVVQEEADEILD 77 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS--------------------CTT---EEEETTTHHHHH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccc-------------------ccccchhhhhhhHHHHHH
Confidence 469999999999999999999999999999999888864 542 11333333333221 111
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEE------eCC-CceE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSR------KKD-DVVE 151 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~------~~~-~~~~ 151 (446)
--..++.+. .+.-...+..++...|..-+-+.|.. |.-.+.|+.+-..++++-. |.+. .+. -+..
T Consensus 78 elgi~y~~~-----~~g~~v~d~~~~~s~L~s~a~~aGak--ifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl 150 (230)
T PF01946_consen 78 ELGIPYEEY-----GDGYYVADSVEFTSTLASKAIDAGAK--IFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL 150 (230)
T ss_dssp HHT---EE------SSEEEES-HHHHHHHHHHHHHTTTEE--EEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred hCCceeEEe-----CCeEEEEcHHHHHHHHHHHHhcCCCE--EEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence 111222221 01112246678888888777777776 7777888887544421111 1111 110 1346
Q ss_pred EEEEcEEEEccCCC
Q 013303 152 EETFDAVVVCNGHF 165 (446)
Q Consensus 152 ~~~~d~VVvAtG~~ 165 (446)
.+++++||-||||-
T Consensus 151 ~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 151 TIRAKVVIDATGHD 164 (230)
T ss_dssp EEEESEEEE---SS
T ss_pred eEEEeEEEeCCCCc
Confidence 89999999999983
No 150
>PRK05868 hypothetical protein; Validated
Probab=99.00 E-value=4.9e-09 Score=102.99 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=83.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC--ce-eeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--GS-WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--G~-w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
|+||+|||||++|+++|..|++.|++|+|||+.+.+. |. ....+..- .+..|..... .........+....+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~-~~~~~~~~~~~~~~~~g 79 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAA-QEHKTRIRGASFVDRDG 79 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHH-HhhccCccceEEEeCCC
Confidence 5799999999999999999999999999999987542 11 11110000 0011110000 00000111111111110
Q ss_pred CcccCCCCCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303 77 LMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~ 155 (446)
. .+...+..... ......+ .-..+.++.+.|.+.+ ..+++ ++|+++|+.++..+ +..+|+..++. ++++
T Consensus 80 ~-~~~~~~~~~~~-~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~dg~----~~~a 149 (372)
T PRK05868 80 N-ELFRDTESTPT-GGPVNSPDIELLRDDLVELLYGAT-QPSVE--YLFDDSISTLQDDG-DSVRVTFERAA----AREF 149 (372)
T ss_pred C-EEeeccccccc-CCCCCCceEEEEHHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecC-CeEEEEECCCC----eEEe
Confidence 0 00000000000 0000000 1123455555554422 23555 99999999998765 66778777654 6899
Q ss_pred cEEEEccCCCCCCcc
Q 013303 156 DAVVVCNGHFSVPRL 170 (446)
Q Consensus 156 d~VVvAtG~~s~p~~ 170 (446)
|.||-|.|.+|.-+.
T Consensus 150 dlvIgADG~~S~vR~ 164 (372)
T PRK05868 150 DLVIGADGLHSNVRR 164 (372)
T ss_pred CEEEECCCCCchHHH
Confidence 999999998776553
No 151
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.00 E-value=1.2e-09 Score=108.54 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=82.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCcee-eeCCCCCCCCCCCCCCC--CCccCCccCceeecC-C
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSW-IYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-P 74 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w-~~~~~~~~~~~g~~p~~--~~~~~~~y~~l~~~~-~ 74 (446)
++||+||||||+|+++|..|++. |++|+|||+....+-.. .+... ..++.|.. .+..-.+++.+.... +
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~----~~~l~~~~~~~l~~lgl~~~~~~~~~~ 78 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDAR----AIALAAGTCQQLARLGVWQALADCATP 78 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCcc----ceeccHHHHHHHHHCCChhhhHhhcCC
Confidence 57999999999999999999998 99999999953111000 00000 00011100 000001111111000 0
Q ss_pred CCCcccCC------CCCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303 75 RELMGFQA------YPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (446)
Q Consensus 75 ~~~~~~~d------~~~~~~~~~~~~~~-~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~ 146 (446)
...+.+.+ ..+... +..... .....+..+.+.|.+.+... ++. ++++++|+++...+ +.|.|++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~-~~~~v~~~~g 153 (395)
T PRK05732 79 ITHIHVSDRGHAGFVRLDAE--DYGVPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ-GSVRVTLDDG 153 (395)
T ss_pred ccEEEEecCCCCceEEeehh--hcCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC-CeEEEEECCC
Confidence 00000000 000000 000001 11234566777777766554 565 88999999998765 6788887665
Q ss_pred CCceEEEEEcEEEEccCCCCC
Q 013303 147 DDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 147 ~~~~~~~~~d~VVvAtG~~s~ 167 (446)
. ++.+|.||.|+|.++.
T Consensus 154 ~----~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 154 E----TLTGRLLVAADGSHSA 170 (395)
T ss_pred C----EEEeCEEEEecCCChh
Confidence 3 6899999999997654
No 152
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.99 E-value=6e-09 Score=78.24 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=66.5
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~ 83 (446)
+|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------------------------------- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------------------------------- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence 6899999999999999999999999999998754100
Q ss_pred CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (446)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~ 146 (446)
-.+++.+++.++.++.|++ +++++.|.++...+++ .+|+++++
T Consensus 38 -----------------~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 38 -----------------FDPDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp -----------------SSHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTS-EEEEEETS
T ss_pred -----------------cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCE-EEEEEecC
Confidence 0157888999999999998 9999999999988744 66777653
No 153
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.97 E-value=2.1e-09 Score=107.06 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=83.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CC--cCceeeeCCCCC---------CCCCCCCCCCCCccCCccCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQ--VGGSWIYTSETE---------SDPLGVDPNRYPVHSSLYKSL 69 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~--~GG~w~~~~~~~---------~~~~g~~p~~~~~~~~~y~~l 69 (446)
.+||+||||||+|+++|..|++.|++|+|+|+. +. ++... ..+.. .+..|+-+.-.-.....+..+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~--~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELP--DVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM 81 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCC--CcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence 369999999999999999999999999999985 21 11100 00000 000111100000000111111
Q ss_pred eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 70 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
....... ....+++.... .............+.+.|.+.+.+. ++. ++++++|++++..+ +.++|++.++.
T Consensus 82 ~~~~~~~-~~~~~~~~~~~---~~~~~g~~~~~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~~~v~~~~g~- 153 (405)
T PRK08850 82 EVWEQDS-FARIEFDAESM---AQPDLGHIVENRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGE-SEAWLTLDNGQ- 153 (405)
T ss_pred EEEeCCC-CceEEEecccc---CCCccEEEEEHHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeC-CeEEEEECCCC-
Confidence 1111100 00001111000 0000011123456666777766654 465 88999999998766 66777776543
Q ss_pred ceEEEEEcEEEEccCCCCCC
Q 013303 149 VVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p 168 (446)
++++|.||.|.|.+|.-
T Consensus 154 ---~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 154 ---ALTAKLVVGADGANSWL 170 (405)
T ss_pred ---EEEeCEEEEeCCCCChh
Confidence 79999999999976643
No 154
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.97 E-value=2.3e-09 Score=104.53 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
.....+.+.+.+.+++.|+. ++.+++|++|...+ +.|+ |.+.++ .+.+|.||+|+|.++..
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~v~gv~~~~g-----~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVE--IRTGTEVTSIDVDG-GRVTGVRTSDG-----EIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEESEEEEEEEEET-TEEEEEEETTE-----EEEECEEEE--GGGHHH
T ss_pred ccccchhhhhHHHHHHhhhh--ccccccccchhhcc-ccccccccccc-----ccccceeEeccccccee
Confidence 45689999999999999988 99999999999887 7787 777654 59999999999975543
No 155
>PRK06996 hypothetical protein; Provisional
Probab=98.96 E-value=6e-09 Score=103.46 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=85.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC----CcEEEEeeCCCcCceeeeCCCCC---------CCCCCCCCCCCCccCCccCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGEQVGGSWIYTSETE---------SDPLGVDPNRYPVHSSLYKS 68 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g----~~v~v~e~~~~~GG~w~~~~~~~---------~~~~g~~p~~~~~~~~~y~~ 68 (446)
.+||+||||||+|+++|..|++.| ++|+|+|+.+... ... ..+.. .+..|.-+. ....+..
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~-~~~-~~r~~~l~~~~~~~L~~lg~~~~----~~~~~~~ 84 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA-SAN-DPRAIALSHGSRVLLETLGAWPA----DATPIEH 84 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc-CCC-CceEEEecHHHHHHHHhCCCchh----cCCcccE
Confidence 479999999999999999999987 4799999975321 000 00000 001111000 0001111
Q ss_pred eeecC--C--CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEE
Q 013303 69 LRVNL--P--RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR 144 (446)
Q Consensus 69 l~~~~--~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~ 144 (446)
+.... . ...+...++..+. .....++.++.+.|.+.+...++. +.++++|+.++... +.++++..
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~--------~g~~v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~-~~v~v~~~ 153 (398)
T PRK06996 85 IHVSQRGHFGRTLIDRDDHDVPA--------LGYVVRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDA-DGVTLALG 153 (398)
T ss_pred EEEecCCCCceEEecccccCCCc--------CEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecC-CeEEEEEC
Confidence 11100 0 0011111111110 111246688999999998888876 88999999998766 67888776
Q ss_pred eCCCceEEEEEcEEEEccCC
Q 013303 145 KKDDVVEEETFDAVVVCNGH 164 (446)
Q Consensus 145 ~~~~~~~~~~~d~VVvAtG~ 164 (446)
++++. +++++|.||.|.|.
T Consensus 154 ~~~g~-~~i~a~lvIgADG~ 172 (398)
T PRK06996 154 TPQGA-RTLRARIAVQAEGG 172 (398)
T ss_pred CCCcc-eEEeeeEEEECCCC
Confidence 54332 47999999999994
No 156
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.96 E-value=6.7e-09 Score=103.76 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=83.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCC---CCccCCccCce----
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNR---YPVHSSLYKSL---- 69 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG---~w~~~~~~~--~~~~g~~p~~---~~~~~~~y~~l---- 69 (446)
.+|+|||||++||++|..|++.| ++|+|||+.+.++. .....+..- .+..|+.... .......+...
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 47999999999999999999998 59999999876532 111111000 0001110000 00000000000
Q ss_pred eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 70 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.......... ...... ....-.++.++.+.|.+.+.. . .++++++|++++..+ +.|+|+..++.
T Consensus 81 ~~~~~~~~~~---~~~~~~------~~~~~i~R~~l~~~L~~~~~~--~--~v~~~~~v~~i~~~~-~~~~v~~~~g~-- 144 (414)
T TIGR03219 81 RNGSDASYLG---ATIAPG------VGQSSVHRADFLDALLKHLPE--G--IASFGKRATQIEEQA-EEVQVLFTDGT-- 144 (414)
T ss_pred EecCccceee---eecccc------CCcccCCHHHHHHHHHHhCCC--c--eEEcCCEEEEEEecC-CcEEEEEcCCC--
Confidence 0000000000 000000 011124667777777765532 2 278999999998766 67988887654
Q ss_pred eEEEEEcEEEEccCCCCCC
Q 013303 150 VEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p 168 (446)
++.+|.||+|+|.+|.-
T Consensus 145 --~~~ad~vVgADG~~S~v 161 (414)
T TIGR03219 145 --EYRCDLLIGADGIKSAL 161 (414)
T ss_pred --EEEeeEEEECCCccHHH
Confidence 68999999999987753
No 157
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.96 E-value=9.2e-09 Score=101.77 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=84.8
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc------CceeeeCCCCC-CCCCCCCCCCCCccCCccCceeecC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNL 73 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~------GG~w~~~~~~~-~~~~g~~p~~~~~~~~~y~~l~~~~ 73 (446)
|.+||+||||||+|+++|..|++.|++|+|||+.+.. |.......... .+..|+-.... -.......+....
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~-~~~~~~~~~~~~~ 79 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMD-REGLVHEGTEIAF 79 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHH-hcCceecceEEee
Confidence 6789999999999999999999999999999998741 11111000000 00111100000 0000111111100
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~ 152 (446)
... ...+++... ...... ......+.+.|.+.+...+.. ++++++++.+...+.+...|++.. +++..+
T Consensus 80 ~~~---~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~~~~~~V~~~~-~g~~~~ 149 (390)
T TIGR02360 80 DGQ---RFRIDLKAL----TGGKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLAGDRPYVTFER-DGERHR 149 (390)
T ss_pred CCE---EEEEecccc----CCCceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecCCCccEEEEEE-CCeEEE
Confidence 110 011112111 000010 112345666677767777766 888888877754332456677652 223347
Q ss_pred EEEcEEEEccCCCCCCc
Q 013303 153 ETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 153 ~~~d~VVvAtG~~s~p~ 169 (446)
+++|.||.|.|.+|.-+
T Consensus 150 i~adlvIGADG~~S~VR 166 (390)
T TIGR02360 150 LDCDFIAGCDGFHGVSR 166 (390)
T ss_pred EEeCEEEECCCCchhhH
Confidence 89999999999887654
No 158
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.95 E-value=9.3e-09 Score=100.34 Aligned_cols=162 Identities=22% Similarity=0.187 Sum_probs=94.0
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeee-CCCCCCCCCCCCCCC-------------------
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY-TSETESDPLGVDPNR------------------- 58 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~-~~~~~~~~~g~~p~~------------------- 58 (446)
+++||+|||||+.|+++|.+|++++ ++|+|+||.+.+|..-.. +..+.+.-+-..|..
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999998 999999999988732211 111111100001110
Q ss_pred ---CCcc----------------CCccCceeecCCCCCcccCCC----CCCcCCCCC-----CCCCCCCCCHHHHHHHHH
Q 013303 59 ---YPVH----------------SSLYKSLRVNLPRELMGFQAY----PFVARNYEG-----SVDLRRYPGHEEVLRYLQ 110 (446)
Q Consensus 59 ---~~~~----------------~~~y~~l~~~~~~~~~~~~d~----~~~~~~~~~-----~~~~~~~~~~~~v~~yl~ 110 (446)
.+.. ...|+.+..|... .+...|- .+.+...+. ......-....++...+.
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~-~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVF-DLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCc-ceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 0000 0112222222222 1111110 011100000 011122234466777777
Q ss_pred HHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 111 NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 111 ~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
+.+.+.|.. +++|++|+.|++.+++.+.+.+.+++ .. ++++.||+|.|.++.+
T Consensus 161 e~a~~~g~~--i~ln~eV~~i~~~~dg~~~~~~~~g~--~~-~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 161 EEAQANGVE--LRLNTEVTGIEKQSDGVFVLNTSNGE--ET-LEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHcCCE--EEecCeeeEEEEeCCceEEEEecCCc--EE-EEeeEEEECCchhHHH
Confidence 788888888 99999999999988445666666654 22 9999999999987654
No 159
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.95 E-value=7.9e-09 Score=102.49 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s 166 (446)
.....+.+.|.+.+++.|+. +.++++|.+++..+ +.|.|.+.++ ++.+|.||+|+|.++
T Consensus 146 vd~~~l~~aL~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~i~ad~vV~A~G~~s 204 (393)
T PRK11728 146 VDYRAVAEAMAELIQARGGE--IRLGAEVTALDEHA-NGVVVRTTQG-----EYEARTLINCAGLMS 204 (393)
T ss_pred ECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEecC-CeEEEEECCC-----EEEeCEEEECCCcch
Confidence 35678888888888888887 89999999998765 6677766432 689999999999765
No 160
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.94 E-value=2.3e-08 Score=100.63 Aligned_cols=161 Identities=21% Similarity=0.247 Sum_probs=89.7
Q ss_pred eEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeeeCCCC----CC---CCCCCCCCCC-Cc-----------cC
Q 013303 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSET----ES---DPLGVDPNRY-PV-----------HS 63 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~~~~~----~~---~~~g~~p~~~-~~-----------~~ 63 (446)
||+|||||.||++||..+++.| .+|+|+|+.+..||.-...... .. ...|...+.. .. ..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 9999999998877653321100 00 0001100000 00 00
Q ss_pred CccCceeecCCCC--CcccCCCCCCcC--CCCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEE
Q 013303 64 SLYKSLRVNLPRE--LMGFQAYPFVAR--NYEGSV-------DLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR 132 (446)
Q Consensus 64 ~~y~~l~~~~~~~--~~~~~d~~~~~~--~~~~~~-------~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~ 132 (446)
.+.+.+..+.+.. ++. ...++... ...... .......+.++.+.|.+.+++.+++ ++++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGID--TRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeE
Confidence 0000000011000 001 01111100 000000 0011235578899999999999988 99999999998
Q ss_pred EcCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 133 LVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 133 ~~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.++++. +-|.+.+..+....+.++.||+|||.++.
T Consensus 158 ~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 754332 33445443344446789999999997664
No 161
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.93 E-value=2.1e-10 Score=114.59 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=36.5
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~ 83 (446)
||+|||||+||++||..+++.|.+|+|+|+.+.+||..........+..... ......++..+...... ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~---~~~~~gi~~e~~~~~~~----~~~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDE---DQVIGGIFREFLNRLRA----RGGY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHH---HHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchh---hccCCCHHHHHHHHHhh----hccc
Confidence 8999999999999999999999999999999999998764311000000000 00000011111100000 0000
Q ss_pred CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccC
Q 013303 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163 (446)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG 163 (446)
+.... ...........+.+...+.+.+.+.|++ +.+++.|..+..+++.-+.|.+.+..+ ..++.++.+|-|||
T Consensus 74 ~~~~~---~~~~~~~~~~~~~~~~~l~~~l~e~gv~--v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 74 PQEDR---YGWVSNVPFDPEVFKAVLDEMLAEAGVE--VLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc---cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccc-cccccccccccccc
Confidence 00000 0000011234456666778888888998 999999999988753345566655333 46899999999999
Q ss_pred C
Q 013303 164 H 164 (446)
Q Consensus 164 ~ 164 (446)
-
T Consensus 148 ~ 148 (428)
T PF12831_consen 148 D 148 (428)
T ss_dssp -
T ss_pred c
Confidence 4
No 162
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.92 E-value=3.5e-09 Score=106.43 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=85.5
Q ss_pred CeEEEECcChHHHHHHHHHHH----CCCcEEEEeeCCCcCce---eeeCCC-CCCCCCCCCCCC-C-CccCCccCc----
Q 013303 3 RHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGS---WIYTSE-TESDPLGVDPNR-Y-PVHSSLYKS---- 68 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~----~g~~v~v~e~~~~~GG~---w~~~~~-~~~~~~g~~p~~-~-~~~~~~y~~---- 68 (446)
+||+||||||+|+++|..|++ .|++|+|||+.+.+.-. +..... ......+..|.. . +-.-.+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999998 79999999995322100 000000 000000111100 0 000011111
Q ss_pred -------eeecCCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CCCcEEeCeEEEEEEEc--
Q 013303 69 -------LRVNLPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLV-- 134 (446)
Q Consensus 69 -------l~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~---l~~~i~~~~~V~~v~~~-- 134 (446)
+...... ....|...+ . ........++..+.+.|.+.+.+.+ +. ++++++|++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~ 151 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN---G----KEDMACIIENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSK 151 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC---C----CCceEEEEEHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccc
Confidence 1110000 011111110 0 0001122467788888888887764 55 8999999999752
Q ss_pred ----CCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303 135 ----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (446)
Q Consensus 135 ----~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~ 170 (446)
.....+|++.++. ++++|.||.|.|.+|.-+.
T Consensus 152 ~~~~~~~~v~v~~~~g~----~i~a~llVgADG~~S~vR~ 187 (437)
T TIGR01989 152 YPNDNSNWVHITLSDGQ----VLYTKLLIGADGSNSNVRK 187 (437)
T ss_pred cccCCCCceEEEEcCCC----EEEeeEEEEecCCCChhHH
Confidence 1145667665543 7999999999998776543
No 163
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.91 E-value=1.8e-08 Score=102.91 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCCC
Q 013303 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 102 ~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~p 168 (446)
...+...+...+.+.|.. +..+++|+++...+ +.|.|++.+. .++..++.++.||+|+|.++..
T Consensus 154 ~~rl~~~l~~~A~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 154 DARLVVLNARDAAERGAE--ILTRTRVVSARREN-GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred HHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence 344555566668888988 89999999998765 6788887762 2334579999999999987643
No 164
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.89 E-value=2.1e-08 Score=100.08 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC-ceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~-~~~~~~~d~VVvAtG~~s~ 167 (446)
....+...|.+.+++.|+. ++++++|++++..+ +.|++.+.++.+ +..++.+|+||+|+|.++.
T Consensus 195 ~~~~~~~~l~~~a~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQ--FRYGQEVTSIKTDG-GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 3456667777888888987 89999999998765 667776655321 1236899999999998764
No 165
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.88 E-value=1.5e-08 Score=102.89 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=86.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC--cCceeeeCCCC------CCCCCCCCCCCCCccCCccCce----
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--VGGSWIYTSET------ESDPLGVDPNRYPVHSSLYKSL---- 69 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~--~GG~w~~~~~~------~~~~~g~~p~~~~~~~~~y~~l---- 69 (446)
..||+|||||++|++||..+++.|.+|+|+||.+. .||.-...... ..+..+..-+. ...+..+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 79 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPE----EEFWQDLLRVT 79 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccH----HHHHHHHHHhh
Confidence 47999999999999999999999999999999864 55532221110 00000000000 0000000
Q ss_pred ------------eecCCCC--CcccCCCCCCcCCCCCC--CCCCC--CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEE
Q 013303 70 ------------RVNLPRE--LMGFQAYPFVARNYEGS--VDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNA 131 (446)
Q Consensus 70 ------------~~~~~~~--~~~~~d~~~~~~~~~~~--~~~~~--~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v 131 (446)
..+.+.. .+.-...+|........ ..... ...+..+...|.+.+++.++. ++++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~--i~~~t~v~~l 157 (466)
T PRK08274 80 GGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVE--IRYDAPVTAL 157 (466)
T ss_pred CCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEE
Confidence 0000000 00000111111000000 00000 112467888888889998988 9999999999
Q ss_pred EEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 132 RLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 132 ~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
...+ ++.. |.+...++....+.++.||+|||.+..
T Consensus 158 ~~~~-g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 158 ELDD-GRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred EecC-CeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 8754 4433 444333334457889999999997543
No 166
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.88 E-value=1.6e-08 Score=103.41 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
....+...+...+.+.|.. +..+++|+++...+ +.|.|++.++.++..++.++.||+|+|.++..
T Consensus 153 d~~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 153 DDARLVVLNALDAAERGAT--ILTRTRCVSARREG-GLWRVETRDADGETRTVRARALVNAAGPWVTD 217 (502)
T ss_pred cHHHHHHHHHHHHHHCCCE--EecCcEEEEEEEcC-CEEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence 3455666666778888987 99999999998875 67888887765555679999999999987643
No 167
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.87 E-value=3.6e-08 Score=103.02 Aligned_cols=163 Identities=18% Similarity=0.141 Sum_probs=88.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCc---CceeeeCCCCC--CCCCCCCCCC-----CCccCCccCcee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV---GGSWIYTSETE--SDPLGVDPNR-----YPVHSSLYKSLR 70 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~---GG~w~~~~~~~--~~~~g~~p~~-----~~~~~~~y~~l~ 70 (446)
..||+||||||+||++|..|++. |++|+|||+.+.. |-.....+++- .+..|+.... .......|..-
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~- 110 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD- 110 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC-
Confidence 46999999999999999999995 9999999987643 10000000000 0001110000 00000011100
Q ss_pred ecCCCCCcc---cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC--ceEEEEEe
Q 013303 71 VNLPRELMG---FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN--KWKVKSRK 145 (446)
Q Consensus 71 ~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~--~~~v~~~~ 145 (446)
......+.. +.+.+... ........+...+.+.|.+.+.+.+....++++++|++++..+++ ..+|++++
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~-----~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~ 185 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGL-----SEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRR 185 (634)
T ss_pred CccccceeccccccccCCCC-----CCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEE
Confidence 000000000 01111000 000112245667888888888877643237899999999876422 36777765
Q ss_pred C----CCceEEEEEcEEEEccCCCCCCcc
Q 013303 146 K----DDVVEEETFDAVVVCNGHFSVPRL 170 (446)
Q Consensus 146 ~----~~~~~~~~~d~VVvAtG~~s~p~~ 170 (446)
. .++.+++++|+||-|.|.+|.-+.
T Consensus 186 ~~~~~~g~~~tv~A~~lVGaDGa~S~VR~ 214 (634)
T PRK08294 186 TDGEHEGEEETVRAKYVVGCDGARSRVRK 214 (634)
T ss_pred CCCCCCCceEEEEeCEEEECCCCchHHHH
Confidence 3 234468999999999998776553
No 168
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.86 E-value=2.7e-08 Score=98.03 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccC
Q 013303 99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171 (446)
Q Consensus 99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p 171 (446)
+.....+...+.+.+.+.++. ++++++|+++...+ +.|.|++.++ ++.+|.||+|+|.++....+
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAE--LLFNEPVTAIEADG-DGVTVTTADG-----TYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCE--EECCCEEEEEEeeC-CeEEEEeCCC-----EEEeeEEEEecCcchhhhcc
Confidence 445567777777777778887 88999999998866 6677776543 58999999999987654444
No 169
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.85 E-value=1.3e-08 Score=103.37 Aligned_cols=142 Identities=16% Similarity=0.223 Sum_probs=77.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCcCceeeeCCCCCCCCCCCCCCCCCcc-CCccCcee------e-c
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLR------V-N 72 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~GG~w~~~~~~~~~~~g~~p~~~~~~-~~~y~~l~------~-~ 72 (446)
.+||+|||||+||+.||..+++.|.+|+++|+. +.+|+. +|+|+..-+. ....+.+. . .
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m------------~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM------------SCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc------------CCccccccchhhHHHHHHHhcCCHHHHH
Confidence 479999999999999999999999999999987 356542 1111110000 00000000 0 0
Q ss_pred CCCCCcccCCCCCCcCCC-CCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCc
Q 013303 73 LPRELMGFQAYPFVARNY-EGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDV 149 (446)
Q Consensus 73 ~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~ 149 (446)
...... ++.+..... +.......-..+..+...+.+.+... ++. + +.++|..+...+ +. ..|.+.++
T Consensus 72 ~d~~gi---q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~--I-~q~~V~~Li~e~-grV~GV~t~dG--- 141 (618)
T PRK05192 72 IDKTGI---QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLD--L-FQGEVEDLIVEN-GRVVGVVTQDG--- 141 (618)
T ss_pred HhhccC---ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEecC-CEEEEEEECCC---
Confidence 000000 011100000 00000111234566777777777655 565 4 577888887654 33 23555443
Q ss_pred eEEEEEcEEEEccCCCC
Q 013303 150 VEEETFDAVVVCNGHFS 166 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s 166 (446)
..+.++.||+|||.+.
T Consensus 142 -~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 142 -LEFRAKAVVLTTGTFL 157 (618)
T ss_pred -CEEECCEEEEeeCcch
Confidence 3799999999999644
No 170
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.84 E-value=8.2e-08 Score=98.11 Aligned_cols=162 Identities=18% Similarity=0.178 Sum_probs=87.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC-------CCCCCCCCC-CCc-----------c
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-------DPLGVDPNR-YPV-----------H 62 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~-------~~~g~~p~~-~~~-----------~ 62 (446)
..||+|||||.||++||..+++.|.+|+|+|+.+.+||.-......-. ...|...+. .+. .
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 469999999999999999999999999999999888874322110000 000000000 000 0
Q ss_pred CCccCceeecCCCCCccc---CCCCCCcCC-CCC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEE
Q 013303 63 SSLYKSLRVNLPRELMGF---QAYPFVARN-YEG------SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR 132 (446)
Q Consensus 63 ~~~y~~l~~~~~~~~~~~---~d~~~~~~~-~~~------~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~ 132 (446)
..+.+.+..+.+. .+.+ ...+|.... ... .........+..+.+.|.+.+++.+++ +.+++.|+++.
T Consensus 141 ~~l~~~~~~~s~~-~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~ 217 (506)
T PRK06481 141 KALLRYFVDNSAS-AIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIP--LFVNADVTKIT 217 (506)
T ss_pred HHHHHHHHhccHH-HHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCe--EEeCCeeEEEE
Confidence 0000000001100 0000 001111000 000 000001123456778888888888888 99999999997
Q ss_pred EcCCCce-EEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 133 LVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 133 ~~~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
..+ +.. -|.+...+++..++.++.||+|||.+..
T Consensus 218 ~~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 218 EKD-GKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred ecC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 654 432 2334333333457899999999997654
No 171
>PLN02985 squalene monooxygenase
Probab=98.83 E-value=2.8e-08 Score=101.30 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC----ceeeeCCCCC-CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----GSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G----G~w~~~~~~~-~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
.+||+|||||++|+++|..|++.|++|+|+|+..... |.+....... .+..|...............+.......
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 4699999999999999999999999999999974321 1111100000 0001111100000000111111111000
Q ss_pred CcccCCCCCCcCCCCCCCC-CCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEE
Q 013303 77 LMGFQAYPFVARNYEGSVD-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEE 153 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~-~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~ 153 (446)
.. ..+|+.... ..... .....++.++.+.|.+.+.+. ++. +..+ +|+.+..++ +. -.|++...+++..++
T Consensus 123 ~~-~~~~~~~~~--~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~--i~~g-tvv~li~~~-~~v~gV~~~~~dG~~~~~ 195 (514)
T PLN02985 123 EA-VAPFPVDNN--NFPYEPSARSFHNGRFVQRLRQKASSLPNVR--LEEG-TVKSLIEEK-GVIKGVTYKNSAGEETTA 195 (514)
T ss_pred EE-EEeCCCCCc--CCCcccceeeeecHHHHHHHHHHHHhCCCeE--EEee-eEEEEEEcC-CEEEEEEEEcCCCCEEEE
Confidence 00 011221110 00000 112345678888888888765 454 5544 566665443 32 235554444445567
Q ss_pred EEcEEEEccCCCCCCc
Q 013303 154 TFDAVVVCNGHFSVPR 169 (446)
Q Consensus 154 ~~d~VVvAtG~~s~p~ 169 (446)
.+|.||.|+|.+|.-+
T Consensus 196 ~AdLVVgADG~~S~vR 211 (514)
T PLN02985 196 LAPLTVVCDGCYSNLR 211 (514)
T ss_pred ECCEEEECCCCchHHH
Confidence 8999999999877544
No 172
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=1.2e-07 Score=96.39 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=92.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------------ 217 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP------------------------------------------ 217 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC------------------------------------------
Confidence 46899999999999999999999999999999764300
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++.+.+.+..++.|++ ++++++|..++...++...+.... +++..++.+|.||+|
T Consensus 218 ----------------~~--~~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~~~~~~-~g~~~~i~~D~vi~a 276 (472)
T PRK05976 218 ----------------TE--DAELSKEVARLLKKLGVR--VVTGAKVLGLTLKKDGGVLIVAEH-NGEEKTLEADKVLVS 276 (472)
T ss_pred ----------------cC--CHHHHHHHHHHHHhcCCE--EEeCcEEEEEEEecCCCEEEEEEe-CCceEEEEeCEEEEe
Confidence 00 146677787888888988 999999999975211333332221 233357899999999
Q ss_pred cCCCCCCccCCC--CC--CCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHH
Q 013303 162 NGHFSVPRLAQV--PG--IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLD 211 (446)
Q Consensus 162 tG~~s~p~~p~i--~G--~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~e 211 (446)
+| ..|+.+.+ .. +..-.|.+.....++. ...+|.++|....+..
T Consensus 277 ~G--~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~t----s~~~IyAiGD~~~~~~ 324 (472)
T PRK05976 277 VG--RRPNTEGIGLENTDIDVEGGFIQIDDFCQT----KERHIYAIGDVIGEPQ 324 (472)
T ss_pred eC--CccCCCCCCchhcCceecCCEEEECCCccc----CCCCEEEeeecCCCcc
Confidence 99 77776543 11 1111122222111111 2367889997654433
No 173
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.82 E-value=6.3e-08 Score=95.49 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=79.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------------- 179 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------------------------------------- 179 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-----------------------------------------
Confidence 368999999999999999999999999999987543100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++..++.+..++.++. +.++++|.++.... +.+.|++.++. ++.+|.||+|
T Consensus 180 ----------------~~--~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vI~a 234 (377)
T PRK04965 180 ----------------LM--PPEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTD-SGIRATLDSGR----SIEVDAVIAA 234 (377)
T ss_pred ----------------hC--CHHHHHHHHHHHHhCCCE--EEECCeEEEEEccC-CEEEEEEcCCc----EEECCEEEEC
Confidence 00 035667777888888887 88999999998765 56777776543 7999999999
Q ss_pred cCCCCCCcc
Q 013303 162 NGHFSVPRL 170 (446)
Q Consensus 162 tG~~s~p~~ 170 (446)
+| ..|+.
T Consensus 235 ~G--~~p~~ 241 (377)
T PRK04965 235 AG--LRPNT 241 (377)
T ss_pred cC--CCcch
Confidence 99 55653
No 174
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.82 E-value=4.8e-09 Score=75.73 Aligned_cols=38 Identities=37% Similarity=0.589 Sum_probs=35.1
Q ss_pred EECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 7 VIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 7 IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
|||||++||++|..|++.|++|+|||+++.+||.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence 89999999999999999999999999999999988753
No 175
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.81 E-value=2.1e-08 Score=105.92 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
+.....+...+.+.++. |+. ++++++|+++...+ +.|+|.+.++. .+.+|.||+|+|.++..
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLT--IHFGHEVARLERED-DGWQLDFAGGT----LASAPVVVLANGHDAAR 465 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcE--EEeCCEeeEEEEeC-CEEEEEECCCc----EEECCEEEECCCCCccc
Confidence 34556777777777777 777 88999999998766 77887765442 56799999999986643
No 176
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.81 E-value=5.1e-08 Score=96.24 Aligned_cols=62 Identities=29% Similarity=0.282 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
+.....+.+.+.+.++..|+. +.++++|+++...+ +.+.|.+.++ ++.+|.||+|+|.++..
T Consensus 141 ~i~p~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~-~~~~v~~~~~-----~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHGAT--VRDGTKVVEIEPTE-LLVTVKTTKG-----SYQANKLVVTAGAWTSK 202 (380)
T ss_pred EEcHHHHHHHHHHHHHHcCCE--EECCCeEEEEEecC-CeEEEEeCCC-----EEEeCEEEEecCcchHH
Confidence 345678888888888888887 88999999998765 6677765432 68999999999976543
No 177
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.80 E-value=8.2e-08 Score=95.35 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=84.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+++++|||||+.|+..|..+++.|.+|+|+|+.+++-
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL------------------------------------------- 209 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL------------------------------------------- 209 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------------------
Confidence 5789999999999999999999999999999987540
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
|. -.+++.+.+.+..++.++. ++++++|+.++..+ +.-.++++++.+. ++++|.|++|
T Consensus 210 --p~---------------~D~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~-~~v~v~~~~g~~~--~~~ad~vLvA 267 (454)
T COG1249 210 --PG---------------EDPEISKELTKQLEKGGVK--ILLNTKVTAVEKKD-DGVLVTLEDGEGG--TIEADAVLVA 267 (454)
T ss_pred --Cc---------------CCHHHHHHHHHHHHhCCeE--EEccceEEEEEecC-CeEEEEEecCCCC--EEEeeEEEEc
Confidence 10 0168899999998887777 99999999998876 3366666665422 6889999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| -+|+...
T Consensus 268 iG--R~Pn~~~ 276 (454)
T COG1249 268 IG--RKPNTDG 276 (454)
T ss_pred cC--CccCCCC
Confidence 99 7888764
No 178
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.80 E-value=1e-07 Score=96.57 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=93.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 207 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP------------------------------------------ 207 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC------------------------------------------
Confidence 36899999999999999999999999999999764310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. ...++.+.+.+..++.+++ ++++++|.+++..+ +...+...++ ...++.+|.||+|
T Consensus 208 ---~---------------~~~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~g--~~~~i~~D~vi~a 264 (461)
T TIGR01350 208 ---G---------------EDAEVSKVVAKALKKKGVK--ILTNTKVTAVEKND-DQVVYENKGG--ETETLTGEKVLVA 264 (461)
T ss_pred ---C---------------CCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEeCC--cEEEEEeCEEEEe
Confidence 0 0145667777888888888 99999999998765 5555554433 2347899999999
Q ss_pred cCCCCCCccCC--CCC--CCC-CCccEEEeeecCCCCCCCCCEEEEEecCCc
Q 013303 162 NGHFSVPRLAQ--VPG--IDS-WPGKQMHSHNYRIPNPFQDQVVILIGHYAS 208 (446)
Q Consensus 162 tG~~s~p~~p~--i~G--~~~-~~g~~~hs~~~~~~~~~~~k~VvVVG~G~s 208 (446)
+| ..|+... +.. +.. -.|.+.....++. ..++|-++|....
T Consensus 265 ~G--~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t----~~~~IyaiGD~~~ 310 (461)
T TIGR01350 265 VG--RKPNTEGLGLENLGVELDERGRIVVDEYMRT----NVPGIYAIGDVIG 310 (461)
T ss_pred cC--CcccCCCCCcHhhCceECCCCcEeeCCCccc----CCCCEEEeeecCC
Confidence 99 7777652 222 111 1233332222222 2367889997643
No 179
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.78 E-value=1.9e-07 Score=94.62 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=81.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 210 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------------------------------------- 210 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-----------------------------------------
Confidence 468999999999999999999999999999997643100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+.+.+..++.++. ++++++|.+|+..+ +...+...++ ++..++.+|.||+|
T Consensus 211 -------------------~~~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~g-g~~~~i~~D~vi~a 267 (462)
T PRK06416 211 -------------------EDKEISKLAERALKKRGIK--IKTGAKAKKVEQTD-DGVTVTLEDG-GKEETLEADYVLVA 267 (462)
T ss_pred -------------------CCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEEeC-CeeEEEEeCEEEEe
Confidence 0146677788888888888 99999999998765 4566665543 23357899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 268 ~G--~~p~~~~ 276 (462)
T PRK06416 268 VG--RRPNTEN 276 (462)
T ss_pred eC--CccCCCC
Confidence 99 7777653
No 180
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.78 E-value=5e-08 Score=95.55 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=85.5
Q ss_pred eEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCc--eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303 4 HVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGG--SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG--~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~ 79 (446)
||+|||||+||+++|..|++. |++|+++|+.+.+|| +|.+..... .+....+ ...+-...|+......+.....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~-~~~~~~~-~~~~v~~~W~~~~v~~~~~~~~ 78 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDL-SDAQHAW-LADLVQTDWPGYEVRFPKYRRK 78 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceeccccc-chhhhhh-hhhhheEeCCCCEEECcchhhh
Confidence 799999999999999999987 999999999988876 455432110 0000000 0000112233222222111000
Q ss_pred cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV 159 (446)
+ .......++.++.+++.+.+ +.. +.++++|.+++. +. |++.++. ++.+|.||
T Consensus 79 l-------------~~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~~---~~--v~l~dg~----~~~A~~VI 131 (370)
T TIGR01789 79 L-------------KTAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLDA---DG--VDLAPGT----RINARSVI 131 (370)
T ss_pred c-------------CCCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEeC---CE--EEECCCC----EEEeeEEE
Confidence 0 01223345677777775433 333 777999998842 33 4444443 79999999
Q ss_pred EccCCCCCCccCCCCCCCCCCccEEE
Q 013303 160 VCNGHFSVPRLAQVPGIDSWPGKQMH 185 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~~~~~g~~~h 185 (446)
.|.|..+. .+...|...|.|..+.
T Consensus 132 ~A~G~~s~--~~~~~~~Q~f~G~~~r 155 (370)
T TIGR01789 132 DCRGFKPS--AHLKGGFQVFLGREMR 155 (370)
T ss_pred ECCCCCCC--ccccceeeEEEEEEEE
Confidence 99996532 2222455555554433
No 181
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.77 E-value=7.4e-08 Score=97.47 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEccCCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAtG~~s~p 168 (446)
.....+...+.+.+++.|+. ++++++|++++..+++.|.+++.+.. ++..++.+|+||+|+|.++..
T Consensus 175 Vdp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 175 VDFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred ECHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 35577888888888888887 99999999998865356888765422 223468999999999987643
No 182
>PRK07121 hypothetical protein; Validated
Probab=98.77 E-value=3.2e-08 Score=101.04 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEE-cEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETF-DAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~-d~VVvAtG~~s~ 167 (446)
.+..+.+.|.+.+++.++. +.++++|+++..+++++ .-|.... .++...+.+ +.||+|||.++.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQ--IRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCc
Confidence 4677888899999998887 99999999998764333 2344433 233457888 999999997653
No 183
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.75 E-value=3.5e-08 Score=102.02 Aligned_cols=156 Identities=21% Similarity=0.291 Sum_probs=81.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC-c-C-ceee----eCCCCC--CCCCCCCCCCCCccCCcc-----C
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-V-G-GSWI----YTSETE--SDPLGVDPNRYPVHSSLY-----K 67 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~-~-G-G~w~----~~~~~~--~~~~g~~p~~~~~~~~~y-----~ 67 (446)
+.+|+|||||++||++|..|++.|++|+|||+.+. . + |.+. ..++.- .+..|+.....+...... .
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i~ 160 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRIN 160 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccceee
Confidence 46899999999999999999999999999999641 1 1 1110 000000 000110000000000000 0
Q ss_pred ceeecCCCC-CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303 68 SLRVNLPRE-LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (446)
Q Consensus 68 ~l~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~ 146 (446)
.+....... ...+..+..... .+.......++.++.+.|.+. .+.. .++++++|++++..+ +.++|++.++
T Consensus 161 ~~~d~~~G~~~~~~~~~~~~~~---~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~-d~VtV~~~dG 232 (668)
T PLN02927 161 GLVDGISGSWYVKFDTFTPAAS---RGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG-DKVTVVLENG 232 (668)
T ss_pred eeeecCCCceEeeccccccccc---cCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC-CEEEEEECCC
Confidence 000000000 011111110000 000011234677777777442 3332 378899999998765 6677777665
Q ss_pred CCceEEEEEcEEEEccCCCCCCc
Q 013303 147 DDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 147 ~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
. ++.+|.||.|.|.+|.-+
T Consensus 233 ~----ti~aDlVVGADG~~S~vR 251 (668)
T PLN02927 233 Q----RYEGDLLVGADGIWSKVR 251 (668)
T ss_pred C----EEEcCEEEECCCCCcHHH
Confidence 3 689999999999877544
No 184
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.73 E-value=4.2e-07 Score=92.17 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=80.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 204 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR----------------------------------------- 204 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-----------------------------------------
Confidence 368999999999999999999999999999997543100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++...+.+..++.+++ ++++++|..++..+ +...+++.... ...++.+|.||+|
T Consensus 205 -------------------~d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~ViiA 261 (463)
T TIGR02053 205 -------------------EEPEISAAVEEALAEEGIE--VVTSAQVKAVSVRG-GGKIITVEKPG-GQGEVEADELLVA 261 (463)
T ss_pred -------------------cCHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEe
Confidence 0145667788888888888 99999999998754 45566654321 2247899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 262 ~G--~~p~~~~ 270 (463)
T TIGR02053 262 TG--RRPNTDG 270 (463)
T ss_pred EC--CCcCCCC
Confidence 99 7777654
No 185
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.73 E-value=2e-07 Score=94.70 Aligned_cols=106 Identities=24% Similarity=0.282 Sum_probs=81.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 220 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------------------------------ 220 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------------------------------------------
Confidence 47899999999999999999999999999998753310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. ...++.+.+.+..++.|+. ++.+++|++++..+ +...+...+++++..++.+|.|++|
T Consensus 221 ----------------~--~d~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~~~g~~~~i~~D~vl~a 279 (475)
T PRK06327 221 ----------------A--ADEQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGG-KGVSVAYTDADGEAQTLEVDKLIVS 279 (475)
T ss_pred ----------------c--CCHHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcC-CEEEEEEEeCCCceeEEEcCEEEEc
Confidence 0 0145667777777778888 99999999998765 4455665554444457999999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+.+.
T Consensus 280 ~G--~~p~~~~ 288 (475)
T PRK06327 280 IG--RVPNTDG 288 (475)
T ss_pred cC--CccCCCC
Confidence 99 7887653
No 186
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.73 E-value=2.7e-07 Score=93.38 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=78.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+.+|..|.+.|.+|+++++.+.+...
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~----------------------------------------- 208 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG----------------------------------------- 208 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-----------------------------------------
Confidence 368999999999999999999999999999987533100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+.+.+..++.|++ ++++++|.+++... ....+ .. +++..++.+|.||+|
T Consensus 209 -------------------~d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~-~~v~~--~~-~g~~~~i~~D~vivA 263 (458)
T PRK06912 209 -------------------EDEDIAHILREKLENDGVK--IFTGAALKGLNSYK-KQALF--EY-EGSIQEVNAEFVLVS 263 (458)
T ss_pred -------------------ccHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcC-CEEEE--EE-CCceEEEEeCEEEEe
Confidence 0146777888888888988 99999999998654 33333 22 222346899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 264 ~G--~~p~~~~ 272 (458)
T PRK06912 264 VG--RKPRVQQ 272 (458)
T ss_pred cC--CccCCCC
Confidence 99 7777653
No 187
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.72 E-value=1.9e-07 Score=94.04 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.....+.+.+.+.+.+ .|+. ++++++|+.+++.+++.|++.+.+. .++..++.+|+||+|+|.++.
T Consensus 181 VD~~~L~~aL~~~l~~~~Gv~--i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 181 VNFGALTRKLAKHLESHPNAQ--VKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred cCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 3445666666666643 3666 8999999999887447899875432 222235899999999998774
No 188
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.72 E-value=2.3e-07 Score=94.07 Aligned_cols=105 Identities=25% Similarity=0.254 Sum_probs=80.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------ 209 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP------------------------------------------ 209 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------------
Confidence 46899999999999999999999999999998653310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++.+.+.+..++.|++ ++++++|++++... +...+.+...++...++.+|.||+|
T Consensus 210 ----------------~~--d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vi~a 268 (466)
T PRK07818 210 ----------------NE--DAEVSKEIAKQYKKLGVK--ILTGTKVESIDDNG-SKVTVTVSKKDGKAQELEADKVLQA 268 (466)
T ss_pred ----------------cc--CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CeEEEEEEecCCCeEEEEeCEEEEC
Confidence 00 145677788888888998 99999999998654 4455655422333357999999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 269 ~G--~~pn~~ 276 (466)
T PRK07818 269 IG--FAPRVE 276 (466)
T ss_pred cC--cccCCC
Confidence 99 677764
No 189
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.71 E-value=1.1e-07 Score=94.29 Aligned_cols=100 Identities=23% Similarity=0.249 Sum_probs=78.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+..
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 183 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN---------------------------------------- 183 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh----------------------------------------
Confidence 3689999999999999999999999999999876442110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+++.+..++.|+. ++++++|++++. + +...+++.++. ++.+|.||+|
T Consensus 184 -------------------~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~-~-~~~~v~l~~g~----~i~aD~Vv~a 236 (396)
T PRK09754 184 -------------------APPPVQRYLLQRHQQAGVR--ILLNNAIEHVVD-G-EKVELTLQSGE----TLQADVVIYG 236 (396)
T ss_pred -------------------cCHHHHHHHHHHHHHCCCE--EEeCCeeEEEEc-C-CEEEEEECCCC----EEECCEEEEC
Confidence 0145667788888888988 999999999975 2 44556655543 6899999999
Q ss_pred cCCCCCCcc
Q 013303 162 NGHFSVPRL 170 (446)
Q Consensus 162 tG~~s~p~~ 170 (446)
+| ..|+.
T Consensus 237 ~G--~~pn~ 243 (396)
T PRK09754 237 IG--ISAND 243 (396)
T ss_pred CC--CChhh
Confidence 99 66664
No 190
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.71 E-value=1.6e-07 Score=94.53 Aligned_cols=100 Identities=19% Similarity=0.279 Sum_probs=77.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||++|+.+|..|++.|.+|+++++.+.+...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 195 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR----------------------------------------- 195 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------------------------------------
Confidence 468999999999999999999999999999997643100
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+.+.+..++.|+. ++++++|++++..+ +...++. ++ .++.+|.||+|
T Consensus 196 -------------------~~~~~~~~~~~~l~~~GI~--i~~~~~V~~i~~~~-~~v~v~~-~g----~~i~~D~viva 248 (438)
T PRK07251 196 -------------------EEPSVAALAKQYMEEDGIT--FLLNAHTTEVKNDG-DQVLVVT-ED----ETYRFDALLYA 248 (438)
T ss_pred -------------------CCHHHHHHHHHHHHHcCCE--EEcCCEEEEEEecC-CEEEEEE-CC----eEEEcCEEEEe
Confidence 0145667778888888988 89999999998654 4444432 22 26899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 249 ~G--~~p~~~ 256 (438)
T PRK07251 249 TG--RKPNTE 256 (438)
T ss_pred eC--CCCCcc
Confidence 99 777764
No 191
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.71 E-value=1.4e-07 Score=94.33 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.+..+.+.+.+.+++.+++ |+++++|+++..++ ++- -|...+ .++....+.++.||+|||.+..
T Consensus 139 ~g~~~~~~l~~~~~~~gv~--i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVD--IRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEE--EEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCee--eeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 5788999999999999977 99999999998875 432 244442 3456678999999999997765
No 192
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.71 E-value=9.6e-08 Score=96.64 Aligned_cols=158 Identities=21% Similarity=0.305 Sum_probs=81.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCC-----CCCCCC------CCCCCCccCCccCcee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-----SDPLGV------DPNRYPVHSSLYKSLR 70 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~-----~~~~g~------~p~~~~~~~~~y~~l~ 70 (446)
++||+|||||.|||+||..+++.|.+|+|+|+....|.++....... .|..-. ..+...........+.
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 48999999999999999999999999999999754322211110000 000000 0000000000000111
Q ss_pred ecCCCC--CcccCCCCCCcCCCCCCCCC-C----CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EE
Q 013303 71 VNLPRE--LMGFQAYPFVARNYEGSVDL-R----RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VK 142 (446)
Q Consensus 71 ~~~~~~--~~~~~d~~~~~~~~~~~~~~-~----~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~ 142 (446)
.+.+.. .+.--..+|.......+... + .-.++..+.+.|.+.+++.++. +..+ .|+.+...+ +.+. |.
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~-~v~~l~~~~-g~v~Gv~ 156 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVN--FIRG-FAEELAIKN-GKAYGVF 156 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCE--EEEe-EeEEEEeeC-CEEEEEE
Confidence 111110 00001122221100000000 0 0124578889999999988887 6554 777776543 4443 33
Q ss_pred EEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 143 SRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 143 ~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
. ++ ..+.++.||+|||.++..
T Consensus 157 ~-~g----~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 157 L-DG----ELLKFDATVIATGGFSGL 177 (466)
T ss_pred E-CC----EEEEeCeEEECCCcCcCC
Confidence 3 22 268999999999986653
No 193
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.70 E-value=4.8e-08 Score=89.90 Aligned_cols=167 Identities=21% Similarity=0.222 Sum_probs=98.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC-----------------------------ceeeeCCCCCCCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----------------------------GSWIYTSETESDPL 52 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-----------------------------G~w~~~~~~~~~~~ 52 (446)
..+|+|||||.-|+++|.+|+++|.+++++|+-+-+- -.|...+......+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~~ 86 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKL 86 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhceee
Confidence 4689999999999999999999999999999865331 11221111100000
Q ss_pred CCCCCCCCccCCc----cCceeecCCCCC------------cccC-CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 013303 53 GVDPNRYPVHSSL----YKSLRVNLPREL------------MGFQ-AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE 115 (446)
Q Consensus 53 g~~p~~~~~~~~~----y~~l~~~~~~~~------------~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~ 115 (446)
+|.... +..... ..++..|..+.. -.|+ .++++............+....+-+..+++++++
T Consensus 87 ~~~t~~-~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~ 165 (399)
T KOG2820|consen 87 HCGTGL-LISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE 165 (399)
T ss_pred ccccee-eecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence 110000 000000 011111111110 0122 3333332111122344566778889999999999
Q ss_pred hCCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCC
Q 013303 116 FGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG 175 (446)
Q Consensus 116 ~~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G 175 (446)
.|.. ++.+..|..+...+. ....|.+.++. .+.++++|+++|+|....+|.--+
T Consensus 166 ~G~i--~~dg~~v~~~~~~~e~~~~v~V~Tt~gs----~Y~akkiI~t~GaWi~klL~~~~~ 221 (399)
T KOG2820|consen 166 LGVI--FRDGEKVKFIKFVDEEGNHVSVQTTDGS----IYHAKKIIFTVGAWINKLLPTSLA 221 (399)
T ss_pred cCeE--EecCcceeeEeeccCCCceeEEEeccCC----eeecceEEEEecHHHHhhcCcccc
Confidence 9998 999999999885543 23445555553 689999999999987777775333
No 194
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=4.7e-08 Score=102.11 Aligned_cols=38 Identities=37% Similarity=0.307 Sum_probs=34.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 39 (446)
..||+|||||.|||+||..+++.|.+|+|+|+....||
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 46999999999999999999999999999999875543
No 195
>PRK06116 glutathione reductase; Validated
Probab=98.70 E-value=2.2e-07 Score=93.91 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=80.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 204 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------------------------------------------ 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------------------------------------------
Confidence 46899999999999999999999999999998653210
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. ...++.+.+.+..++.|++ ++++++|.+++..+++.+.+.+.++. ++.+|.||+|
T Consensus 205 ----------------~--~~~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~g~~~v~~~~g~----~i~~D~Vv~a 260 (450)
T PRK06116 205 ----------------G--FDPDIRETLVEEMEKKGIR--LHTNAVPKAVEKNADGSLTLTLEDGE----TLTVDCLIWA 260 (450)
T ss_pred ----------------c--cCHHHHHHHHHHHHHCCcE--EECCCEEEEEEEcCCceEEEEEcCCc----EEEeCEEEEe
Confidence 0 0146677788888888988 99999999998765343666655442 6899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 261 ~G--~~p~~~~ 269 (450)
T PRK06116 261 IG--REPNTDG 269 (450)
T ss_pred eC--CCcCCCC
Confidence 99 7777653
No 196
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.68 E-value=2.7e-07 Score=95.16 Aligned_cols=64 Identities=17% Similarity=0.068 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeC-CCceEEEEEcEEEEccCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKK-DDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~-~~~~~~~~~d~VVvAtG~~s 166 (446)
.....+...+...+.+.|.. +.++++|+++...+ +. +.|.+.+. .++..++.++.||+|+|.|+
T Consensus 146 vdp~rl~~al~~~A~~~Ga~--i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 146 VDPFRLTAANMLDAKEHGAQ--ILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred ECHHHHHHHHHHHHHhCCCE--EEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 34456666666778888988 99999999998765 44 34665543 23345799999999999865
No 197
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.67 E-value=2.7e-07 Score=93.55 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=79.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 213 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF----------------------------------------- 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-----------------------------------------
Confidence 478999999999999999999999999999997643110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
-..++.+.+.+..++.++. +.++++|++++..+ +.+.+++.++. ++.+|.||+|
T Consensus 214 -------------------~d~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vi~a 267 (461)
T PRK05249 214 -------------------LDDEISDALSYHLRDSGVT--IRHNEEVEKVEGGD-DGVIVHLKSGK----KIKADCLLYA 267 (461)
T ss_pred -------------------CCHHHHHHHHHHHHHcCCE--EEECCEEEEEEEeC-CeEEEEECCCC----EEEeCEEEEe
Confidence 0146677788888888888 89999999998765 55666654432 6899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 268 ~G--~~p~~~ 275 (461)
T PRK05249 268 NG--RTGNTD 275 (461)
T ss_pred ec--CCcccc
Confidence 99 677654
No 198
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.67 E-value=1.2e-07 Score=96.56 Aligned_cols=161 Identities=22% Similarity=0.179 Sum_probs=85.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCC--CCC----------CCCCccCCccCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG--VDP----------NRYPVHSSLYKSL 69 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g--~~p----------~~~~~~~~~y~~l 69 (446)
..||+|||||.|||+||..+++.|. |+|+||.+..||.-......-....+ -.| +..+........+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 99999987655432221100000000 000 0000000000011
Q ss_pred eecCCCCC--cccCCCCCCcCCC-------CCC-CCCCC----CCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEc
Q 013303 70 RVNLPREL--MGFQAYPFVARNY-------EGS-VDLRR----YPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLV 134 (446)
Q Consensus 70 ~~~~~~~~--~~~~d~~~~~~~~-------~~~-~~~~~----~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~ 134 (446)
..+.+..+ +.--..+|..... ..+ ...+. -.++..+.+.|.+.+++ .++. +.+++.|+.+...
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeecc
Confidence 11111000 0000112211000 000 00010 12457888888888887 5777 9999999999765
Q ss_pred CCCceE-EEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 135 ESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 135 ~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+ +... |...+. +....+.++.||+|||.++.
T Consensus 159 ~-g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 T-GRVVGVWVWNR-ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred C-CEEEEEEEEEC-CcEEEEEcCEEEECCCcccC
Confidence 4 4333 444443 33357899999999998664
No 199
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.67 E-value=1.9e-07 Score=94.38 Aligned_cols=64 Identities=23% Similarity=0.266 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHH----hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 100 PGHEEVLRYLQNFARE----FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~----~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
.....+...+.+.+++ .|..-.|+++++|++|++.+++.|.|++.++ ++.+|+||+|+|.|+.+
T Consensus 208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-----~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-----EIRARFVVVSACGYSLL 275 (497)
T ss_pred ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-----EEEeCEEEECcChhHHH
Confidence 4556777777778877 6633238999999999987546788877543 68999999999987643
No 200
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=7.2e-08 Score=99.47 Aligned_cols=65 Identities=8% Similarity=0.004 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
++.++.+.|.+.+.+.++. +.+++.|+++..++++ ..-+...+ ..+....+.++.||+|||.+..
T Consensus 132 ~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 132 TGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred CHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 3578888888888888887 9999999998765422 12233333 3344567899999999997653
No 201
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.65 E-value=3.1e-07 Score=93.40 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=78.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc-cCCccCceee-cCCCCCccc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV-HSSLYKSLRV-NLPRELMGF 80 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~-~~~~y~~l~~-~~~~~~~~~ 80 (446)
+||+|||||+||+.+|..+++.|.+|+|+|+....+|.+...+..+....|. +. .-....+... ........|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~-----l~rEidaLGG~~~~~~d~~~i~~ 75 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGI-----LVKEIDALGGLMGKAADKAGLQF 75 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccch-----hhhhhhcccchHHHHHHhhceeh
Confidence 5899999999999999999999999999998754333321111111000000 00 0000000000 000000001
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCCCceEEEEEcEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~~~~~~~~~d~V 158 (446)
..+.-... +.......-..+..+...+.+.+++. ++. + +...|+.+...+++ ...|.+.++. .+.++.|
T Consensus 76 r~ln~skg--pAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--I-le~~Vv~li~e~~g~V~GV~t~~G~----~I~Ad~V 146 (617)
T TIGR00136 76 RVLNSSKG--PAVRATRAQIDKVLYRKAMRNALENQPNLS--L-FQGEVEDLILEDNDEIKGVVTQDGL----KFRAKAV 146 (617)
T ss_pred eecccCCC--CcccccHHhCCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEEecCCcEEEEEECCCC----EEECCEE
Confidence 11100000 00000112345677888888888877 444 3 45678777654213 3445555543 7999999
Q ss_pred EEccCCCC
Q 013303 159 VVCNGHFS 166 (446)
Q Consensus 159 VvAtG~~s 166 (446)
|+|||.|.
T Consensus 147 ILATGtfL 154 (617)
T TIGR00136 147 IITTGTFL 154 (617)
T ss_pred EEccCccc
Confidence 99999654
No 202
>PRK06370 mercuric reductase; Validated
Probab=98.65 E-value=4.8e-07 Score=91.74 Aligned_cols=104 Identities=26% Similarity=0.331 Sum_probs=80.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 209 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR----------------------------------------- 209 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------------------------------------
Confidence 478999999999999999999999999999997643110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+.+.+..++.|++ ++++++|.+++..+ +...+.+.... ...++.+|.||+|
T Consensus 210 -------------------~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~Vi~A 266 (463)
T PRK06370 210 -------------------EDEDVAAAVREILEREGID--VRLNAECIRVERDG-DGIAVGLDCNG-GAPEITGSHILVA 266 (463)
T ss_pred -------------------cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEC
Confidence 0145667788888888988 99999999998765 44555554321 1246899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 267 ~G--~~pn~~ 274 (463)
T PRK06370 267 VG--RVPNTD 274 (463)
T ss_pred cC--CCcCCC
Confidence 99 777765
No 203
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.65 E-value=4.1e-07 Score=92.25 Aligned_cols=105 Identities=26% Similarity=0.324 Sum_probs=78.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~----------------------------------------- 212 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA----------------------------------------- 212 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-----------------------------------------
Confidence 368999999999999999999999999999997643110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+ ..++.+++.+..++. +. +.++++|+.++..+ +...++..++.+...++.+|.||+|
T Consensus 213 -----------------~--d~~~~~~~~~~l~~~-v~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~i~~D~vi~a 269 (471)
T PRK06467 213 -----------------A--DKDIVKVFTKRIKKQ-FN--IMLETKVTAVEAKE-DGIYVTMEGKKAPAEPQRYDAVLVA 269 (471)
T ss_pred -----------------C--CHHHHHHHHHHHhhc-eE--EEcCCEEEEEEEcC-CEEEEEEEeCCCcceEEEeCEEEEe
Confidence 0 145666666666555 55 88899999998655 4566665554333357999999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 270 ~G--~~pn~~~ 278 (471)
T PRK06467 270 VG--RVPNGKL 278 (471)
T ss_pred ec--ccccCCc
Confidence 99 7777653
No 204
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.64 E-value=3.3e-07 Score=91.51 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEccCCCCC
Q 013303 107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 107 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAtG~~s~ 167 (446)
--+..-+.+.|.. +...++|+.+.+++ +-|-|.+.+.. ++..++.++.||.|||.|+.
T Consensus 168 ~~~a~~A~~~Ga~--il~~~~v~~~~re~-~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 168 AANARDAAEHGAE--ILTYTRVESLRREG-GVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHhcccc--hhhcceeeeeeecC-CEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 3344445666776 78889999999987 57889988865 57789999999999997653
No 205
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=2.1e-07 Score=96.32 Aligned_cols=162 Identities=19% Similarity=0.080 Sum_probs=86.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCC----CCCCCCC------------CccCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL----GVDPNRY------------PVHSSL 65 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~----g~~p~~~------------~~~~~~ 65 (446)
..||+|||||.|||+||..+++.|.+|+|+||....||........-.... +..-+.. +.....
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 469999999999999999999999999999998665543221110000000 0000000 000000
Q ss_pred cCceeecCCCC--CcccCCCCCCcCCC-------CCCC-CCC-CC---CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEE
Q 013303 66 YKSLRVNLPRE--LMGFQAYPFVARNY-------EGSV-DLR-RY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNA 131 (446)
Q Consensus 66 y~~l~~~~~~~--~~~~~d~~~~~~~~-------~~~~-~~~-~~---~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v 131 (446)
.+.+..+.+.. .+.--..+|..... ..+. ..+ .+ .++..+.+.|.+.+.+.++. +.+++.++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L 162 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence 01111111110 00001122221100 0000 000 01 14667888888878777877 8999999998
Q ss_pred EEcCCCceE-EEEEeC-CCceEEEEEcEEEEccCCCC
Q 013303 132 RLVESNKWK-VKSRKK-DDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 132 ~~~~~~~~~-v~~~~~-~~~~~~~~~d~VVvAtG~~s 166 (446)
..++ +... |...+. +++...+.++.||+|||.+.
T Consensus 163 i~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 163 VTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 8654 5433 334332 33456788999999999765
No 206
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.63 E-value=3.8e-07 Score=92.46 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCCC
Q 013303 101 GHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~p 168 (446)
....+.+.|.+.+++.+ +. ++++++|++++..+++.|.|++.+. .+...++.+++||+|+|.++.+
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 44577888888888876 66 9999999999986645698887642 2222368999999999987644
No 207
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.63 E-value=1.5e-07 Score=96.94 Aligned_cols=164 Identities=24% Similarity=0.217 Sum_probs=86.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCC----------CCCccCCccCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPN----------RYPVHSSLYKSL 69 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~--~p~----------~~~~~~~~y~~l 69 (446)
..||+|||+|.|||+||..+++.|.+|+|+||....||.-......-....+. .|. ..+........+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 47999999999999999999999999999999887654322211000000000 000 000000000111
Q ss_pred eecCCCCC--cccCCCCCCcCCC-------CCC-CCCC-CC----CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303 70 RVNLPREL--MGFQAYPFVARNY-------EGS-VDLR-RY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (446)
Q Consensus 70 ~~~~~~~~--~~~~d~~~~~~~~-------~~~-~~~~-~~----~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~ 134 (446)
..+.+..+ +.--..+|..... ..+ ...+ .+ .++.++.+.|.+.+++.++. +..++.|+++...
T Consensus 96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~~ 173 (541)
T PRK07804 96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEEc
Confidence 11111100 0000122211000 000 0000 01 25678899999999888877 8899999999765
Q ss_pred CCCc-eEEEEEe----CCCceEEEEEcEEEEccCCCCC
Q 013303 135 ESNK-WKVKSRK----KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 135 ~~~~-~~v~~~~----~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+++. .-+...+ ..+....+.++.||+|||.++.
T Consensus 174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 4222 1233321 1122357889999999997664
No 208
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=5.9e-07 Score=90.99 Aligned_cols=105 Identities=26% Similarity=0.286 Sum_probs=80.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------------------------------ 211 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------------------------------ 211 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------------------------------
Confidence 47899999999999999999999999999998654310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv 160 (446)
.+ ..++.+.+.+..++.+++ ++++++|.+++..+ +...+.+... +++..++.+|.||+
T Consensus 212 ----------------~~--d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~ 270 (466)
T PRK06115 212 ----------------GT--DTETAKTLQKALTKQGMK--FKLGSKVTGATAGA-DGVSLTLEPAAGGAAETLQADYVLV 270 (466)
T ss_pred ----------------CC--CHHHHHHHHHHHHhcCCE--EEECcEEEEEEEcC-CeEEEEEEEcCCCceeEEEeCEEEE
Confidence 00 145667777888888888 99999999998754 4556655432 12345799999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| ..|+..
T Consensus 271 a~G--~~pn~~ 279 (466)
T PRK06115 271 AIG--RRPYTQ 279 (466)
T ss_pred ccC--Cccccc
Confidence 999 677654
No 209
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.63 E-value=4.4e-07 Score=91.49 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=78.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------ 203 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------------------------------ 203 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------------------------------
Confidence 46899999999999999999999999999998653300
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++.+.+.+..++.|+. ++++++|.+++..+ +...+++.++. ++.+|.||+|
T Consensus 204 ----------------~~--d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~viva 258 (446)
T TIGR01424 204 ----------------GF--DDDMRALLARNMEGRGIR--IHPQTSLTSITKTD-DGLKVTLSHGE----EIVADVVLFA 258 (446)
T ss_pred ----------------cc--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEcCCc----EeecCEEEEe
Confidence 00 146677788888888888 99999999998755 44666654432 6899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 259 ~G--~~pn~~ 266 (446)
T TIGR01424 259 TG--RSPNTK 266 (446)
T ss_pred eC--CCcCCC
Confidence 99 677654
No 210
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.62 E-value=2.9e-07 Score=93.13 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303 99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (446)
Q Consensus 99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~ 170 (446)
..+...+..-|.+.+++.|+. |..++.|+.++. . +.|.|++.++ ++.+|.||+|||.|+....
T Consensus 179 ~i~P~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~-~-~~~~v~t~~g-----~v~A~~VV~Atga~s~~l~ 241 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALELGVE--IHENTPMTGLEE-G-QPAVVRTPDG-----QVTADKVVLALNAWMASHF 241 (460)
T ss_pred EECHHHHHHHHHHHHHHcCCE--EECCCeEEEEee-C-CceEEEeCCc-----EEECCEEEEcccccccccC
Confidence 345677888888888889988 999999999975 2 4577766443 5899999999998765433
No 211
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.62 E-value=3.8e-07 Score=91.23 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
.....+...|.+.+++.|+. |+++++|++++..+ +.+. |++..+ ++.+|.||+|+|.++..
T Consensus 198 ~~p~~~~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~~v~t~~~-----~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLGVK--FRFNTPVDGLLVEG-GRITGVQTGGG-----VITADAYVVALGSYSTA 259 (416)
T ss_pred CCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEEeCCc-----EEeCCEEEECCCcchHH
Confidence 34567778888888888887 89999999998765 4443 444321 68899999999987643
No 212
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.61 E-value=1.6e-07 Score=97.56 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.+..+...|.+.+.+.++. +.+++.|+.+...+ +... |...+ ..+....+.++.||+|||.++.
T Consensus 127 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 127 TGHALLHTLYEQCLKLGVS--FFNEYFALDLIHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred CHHHHHHHHHHHHHHcCCE--EEeccEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 4567788888888888887 99999999997654 4432 22222 2334457899999999997664
No 213
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.61 E-value=2.6e-07 Score=89.30 Aligned_cols=128 Identities=21% Similarity=0.303 Sum_probs=72.1
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEE-eeCCCcCceeeeCCCCCCCCCCCCCCCCC------------ccCCc-----
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVY-EKGEQVGGSWIYTSETESDPLGVDPNRYP------------VHSSL----- 65 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~-e~~~~~GG~w~~~~~~~~~~~g~~p~~~~------------~~~~~----- 65 (446)
||+|||||.||+.||..+++.|.+|+++ .+.+.+|.. +|+|+..- +.+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~------------~Cnpsigg~~kg~L~~Eidalgg~m~~~aD 68 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM------------SCNPSIGGIAKGHLVREIDALGGLMGRAAD 68 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--------------SSSSEEESTTHHHHHHHHHHTT-SHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc------------cchhhhccccccchhHHHhhhhhHHHHHHh
Confidence 8999999999999999999999999999 444444432 22222100 00000
Q ss_pred cCcee---ecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEE
Q 013303 66 YKSLR---VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKV 141 (446)
Q Consensus 66 y~~l~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v 141 (446)
...++ .|..+. |-. ...+.-..+..+.+++++.++.. ++. + +.++|+.+..+++..+-|
T Consensus 69 ~~~i~~~~lN~skG-------pav-------~a~r~qvDr~~y~~~~~~~l~~~~nl~--i-~~~~V~~l~~e~~~v~GV 131 (392)
T PF01134_consen 69 ETGIHFRMLNRSKG-------PAV-------HALRAQVDRDKYSRAMREKLESHPNLT--I-IQGEVTDLIVENGKVKGV 131 (392)
T ss_dssp HHEEEEEEESTTS--------GGC-------TEEEEEE-HHHHHHHHHHHHHTSTTEE--E-EES-EEEEEECTTEEEEE
T ss_pred HhhhhhhcccccCC-------CCc-------cchHhhccHHHHHHHHHHHHhcCCCeE--E-EEcccceEEecCCeEEEE
Confidence 00000 011000 000 00122356788999999988874 454 4 578999998765223445
Q ss_pred EEEeCCCceEEEEEcEEEEccCC
Q 013303 142 KSRKKDDVVEEETFDAVVVCNGH 164 (446)
Q Consensus 142 ~~~~~~~~~~~~~~d~VVvAtG~ 164 (446)
.+.++ ..+.+|.||+|||.
T Consensus 132 ~~~~g----~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 132 VTKDG----EEIEADAVVLATGT 150 (392)
T ss_dssp EETTS----EEEEECEEEE-TTT
T ss_pred EeCCC----CEEecCEEEEeccc
Confidence 55443 37999999999994
No 214
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.59 E-value=5.6e-07 Score=90.72 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=79.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~----------------------------------------- 204 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS----------------------------------------- 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----------------------------------------
Confidence 468999999999999999999999999999987643110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+ ..++.+.+.+..++.|+. ++++++|++++...++...+++.++ ..++.+|.||+|
T Consensus 205 -----------------~--d~~~~~~~~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~v~~~~g---~~~i~~D~vi~a 260 (450)
T TIGR01421 205 -----------------F--DSMISETITEEYEKEGIN--VHKLSKPVKVEKTVEGKLVIHFEDG---KSIDDVDELIWA 260 (450)
T ss_pred -----------------c--CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEeCCceEEEEECCC---cEEEEcCEEEEe
Confidence 0 145677788888888988 9999999999865423345555433 136899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 261 ~G--~~pn~~ 268 (450)
T TIGR01421 261 IG--RKPNTK 268 (450)
T ss_pred eC--CCcCcc
Confidence 99 777765
No 215
>PRK07846 mycothione reductase; Reviewed
Probab=98.59 E-value=1.1e-06 Score=88.46 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=86.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~---~-------------------------------------- 204 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR---H-------------------------------------- 204 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc---c--------------------------------------
Confidence 47899999999999999999999999999999764310 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+.+.+.. +.++. ++++++|++++..+ +...+++.++ .++.+|.||+|
T Consensus 205 -------------------~d~~~~~~l~~l~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g----~~i~~D~vl~a 257 (451)
T PRK07846 205 -------------------LDDDISERFTELA-SKRWD--VRLGRNVVGVSQDG-SGVTLRLDDG----STVEADVLLVA 257 (451)
T ss_pred -------------------cCHHHHHHHHHHH-hcCeE--EEeCCEEEEEEEcC-CEEEEEECCC----cEeecCEEEEE
Confidence 0134555665544 34666 88999999998654 4455555433 27899999999
Q ss_pred cCCCCCCccCCCC----CCCC-CCccEEEeeecCCCCCCCCCEEEEEec
Q 013303 162 NGHFSVPRLAQVP----GIDS-WPGKQMHSHNYRIPNPFQDQVVILIGH 205 (446)
Q Consensus 162 tG~~s~p~~p~i~----G~~~-~~g~~~hs~~~~~~~~~~~k~VvVVG~ 205 (446)
+| ..|+.+.+. |++. -.|.+.....++. ....|-.+|-
T Consensus 258 ~G--~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T----s~p~IyA~GD 300 (451)
T PRK07846 258 TG--RVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT----SAEGVFALGD 300 (451)
T ss_pred EC--CccCccccCchhcCceECCCCcEeECCCccc----CCCCEEEEee
Confidence 99 777765432 2211 1244444333332 2356777774
No 216
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.59 E-value=1.5e-07 Score=94.31 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=33.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 40 (446)
..||+|||+|.|||+||..+. .|.+|+|+||.+..||.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 369999999999999999984 79999999998877654
No 217
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.59 E-value=4.6e-07 Score=88.95 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=31.7
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
+||+|||||++|+++|.+|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999753
No 218
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.59 E-value=4.1e-08 Score=105.01 Aligned_cols=135 Identities=23% Similarity=0.273 Sum_probs=77.2
Q ss_pred CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCc---CceeeeCCCCCCCCCC-CCCC--CCCcc-CCccCceeecC
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLG-VDPN--RYPVH-SSLYKSLRVNL 73 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~---GG~w~~~~~~~~~~~g-~~p~--~~~~~-~~~y~~l~~~~ 73 (446)
++|+|||||||||++|..|++. |++|+|+|+.+.. |.-....+..- ..+. ..+. ..+.. ...|..+....
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l-~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATL-GNLRAADPVSAAAIGDAFNHWDDIDVHF 79 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHH-HHHHhcCHHHHHHHHHhcccCCceEEEE
Confidence 4899999999999999999998 8999999998753 32222111100 0000 0000 00000 00011111100
Q ss_pred CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (446)
Q Consensus 74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~ 153 (446)
.+...... +. .-.-.++.++.+.|.+.+.+.++. ++++++|+.+... ..
T Consensus 80 -------~g~~~~~~----g~-~~~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i~~~-----------------~~ 128 (765)
T PRK08255 80 -------KGRRIRSG----GH-GFAGIGRKRLLNILQARCEELGVK--LVFETEVPDDQAL-----------------AA 128 (765)
T ss_pred -------CCEEEEEC----Ce-eEecCCHHHHHHHHHHHHHHcCCE--EEeCCccCchhhh-----------------hc
Confidence 00000000 00 011257899999999999999987 9999988765310 24
Q ss_pred EEcEEEEccCCCCCCc
Q 013303 154 TFDAVVVCNGHFSVPR 169 (446)
Q Consensus 154 ~~d~VVvAtG~~s~p~ 169 (446)
.+|.||.|+|.+|..+
T Consensus 129 ~~D~VVgADG~~S~vR 144 (765)
T PRK08255 129 DADLVIASDGLNSRIR 144 (765)
T ss_pred CCCEEEEcCCCCHHHH
Confidence 6899999999877543
No 219
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.59 E-value=2.1e-07 Score=96.99 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCCCc
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
++..+...|.+.+.+.++. +..++.++++-.++++... |...+ .++....+.++.||+|||.+....
T Consensus 164 tG~~i~~~L~~~a~~~gv~--i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~ 232 (617)
T PTZ00139 164 TGHAMLHTLYGQSLKYDCN--FFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAY 232 (617)
T ss_pred cHHHHHHHHHHHHHhCCCE--EEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcccc
Confidence 4678899999989888887 8999999997763324322 32222 234556789999999999766543
No 220
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=3e-07 Score=95.58 Aligned_cols=66 Identities=9% Similarity=-0.066 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
++..+...|.+.+.+.++. +..++.++.+...+++. .-|...+ .++....+.++.||+|||.++..
T Consensus 146 tG~~l~~~L~~~~~~~gi~--i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 146 TGHALLHTLYQQNVAAKTQ--FFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred ChHHHHHHHHHHHHhcCCE--EEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 4577888888888888887 88999999987653232 2233322 23444578899999999976643
No 221
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=1.9e-07 Score=97.64 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G 38 (446)
..||+|||||.|||+||..+++.|.+|+|+|+...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3699999999999999999999999999999876654
No 222
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.58 E-value=4.4e-07 Score=84.97 Aligned_cols=106 Identities=26% Similarity=0.328 Sum_probs=90.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+++++|||||..||..+--..+.|-+|+++|-.+++|+...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD--------------------------------------- 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD--------------------------------------- 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------------
Confidence 47899999999999999999999999999999888877622
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv 160 (446)
.++...++...++.++. ++++++|..+++..++...|++.+.. ++.+++++|.+.|
T Consensus 252 ---------------------~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLV 308 (506)
T KOG1335|consen 252 ---------------------GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLV 308 (506)
T ss_pred ---------------------HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEE
Confidence 47788888888889998 99999999999988677888887754 4677899999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
|+| .+|..-
T Consensus 309 siG--RrP~t~ 317 (506)
T KOG1335|consen 309 SIG--RRPFTE 317 (506)
T ss_pred Ecc--Cccccc
Confidence 999 666653
No 223
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=6.7e-08 Score=97.28 Aligned_cols=43 Identities=40% Similarity=0.534 Sum_probs=39.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
+++|+|||||+|||+||++|.+.|++|+|+|.++++||.....
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~ 57 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTF 57 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEE
Confidence 5799999999999999999999999999999999999976543
No 224
>PRK08275 putative oxidoreductase; Provisional
Probab=98.56 E-value=2.7e-07 Score=95.39 Aligned_cols=65 Identities=9% Similarity=0.008 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
++..+.+.|.+.+++.+++ +.+++.|+.+...+++... +...+ .++....+.++.||+|||.++.
T Consensus 135 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 135 EGHDIKKVLYRQLKRARVL--ITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred ChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 5678889999989888887 9999999999765324322 22222 2334457889999999997653
No 225
>PLN02507 glutathione reductase
Probab=98.56 E-value=8.1e-07 Score=90.56 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+..|..|++.|.+|+++++.+.+..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------ 240 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------------------------------------------ 240 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------------------------------------------
Confidence 36899999999999999999999999999998653210
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. ...++.+.+.+..++.|++ ++++++|.+++..+ +...+...++ .++.+|.|++|
T Consensus 241 ----------------~--~d~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~-~~~~v~~~~g----~~i~~D~vl~a 295 (499)
T PLN02507 241 ----------------G--FDDEMRAVVARNLEGRGIN--LHPRTNLTQLTKTE-GGIKVITDHG----EEFVADVVLFA 295 (499)
T ss_pred ----------------c--cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CeEEEEECCC----cEEEcCEEEEe
Confidence 0 0146778888888888988 99999999998654 4555554433 26999999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 296 ~G--~~pn~~~ 304 (499)
T PLN02507 296 TG--RAPNTKR 304 (499)
T ss_pred ec--CCCCCCC
Confidence 99 6777653
No 226
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.56 E-value=7.1e-07 Score=92.05 Aligned_cols=42 Identities=29% Similarity=0.431 Sum_probs=38.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
..||+|||+| +|++||..+++.|.+|+|+||.+.+||.....
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence 4799999999 89999999999999999999999999977665
No 227
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.56 E-value=4e-07 Score=94.89 Aligned_cols=161 Identities=13% Similarity=0.057 Sum_probs=83.0
Q ss_pred CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCC--CCCCCCCCCCCC------------CccCCcc
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSET--ESDPLGVDPNRY------------PVHSSLY 66 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~--~~~~~g~~p~~~------------~~~~~~y 66 (446)
.||+|||||.|||+||..+++. |.+|+|+||....++.. ..... .....+..-+.. +......
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 6999999999999999999998 99999999986543221 11000 000000000000 0000000
Q ss_pred CceeecCCCCC--cccCCCCCCcCCCCC---CCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceE
Q 013303 67 KSLRVNLPREL--MGFQAYPFVARNYEG---SVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWK 140 (446)
Q Consensus 67 ~~l~~~~~~~~--~~~~d~~~~~~~~~~---~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~ 140 (446)
..+..+.+..+ +.-...+|....... .........+..+.+.|.+.+++.+ +. +.+++.|..+...+ +...
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~--i~~~~~v~~Li~~~-g~v~ 167 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDN--VLNRVFITDLLVDD-NRIA 167 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCE--EEeCCEEEEEEEeC-CEEE
Confidence 00000011000 000112221110000 0001112356677778877777764 77 99999999987544 4322
Q ss_pred -EEE-EeCCCceEEEEEcEEEEccCCCCC
Q 013303 141 -VKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 141 -v~~-~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
|.. ....+....+.++.||+|||.++.
T Consensus 168 Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 168 GAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 222 222334457899999999997654
No 228
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=2.9e-07 Score=95.82 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
++..+...|.+.+.+.++. +.+++.|+++..++++... |...+ .++....+.++.||+|||.+...
T Consensus 147 tG~~i~~~L~~~~~~~gi~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 147 TGHAILHTLYQQSLKHNAE--FFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred CHHHHHHHHHHHHhhcCCE--EEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 4577888898888888887 8999999998765423221 23322 23455678899999999976654
No 229
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=2.9e-07 Score=95.51 Aligned_cols=164 Identities=14% Similarity=0.061 Sum_probs=87.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCC--CC------------CCccCCccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDP--NR------------YPVHSSLYK 67 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p--~~------------~~~~~~~y~ 67 (446)
..||+|||+|.|||+||..+++.|.+|+|+||....+|........-....+..+ +. .+.......
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 3599999999999999999999999999999986655432211100000000000 00 000000011
Q ss_pred ceeecCCCCC--cccCCCCCCcCCC------CCCCCCC----------CC---CCHHHHHHHHHHHHHHhCCCCcEEeCe
Q 013303 68 SLRVNLPREL--MGFQAYPFVARNY------EGSVDLR----------RY---PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (446)
Q Consensus 68 ~l~~~~~~~~--~~~~d~~~~~~~~------~~~~~~~----------~~---~~~~~v~~yl~~~~~~~~l~~~i~~~~ 126 (446)
.+..+.+..+ +.--..||..... ..+.... .+ .++..+...|.+.+.+.++. +..++
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~--i~~~~ 164 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCE--EEeCc
Confidence 1111111111 0001123321100 0000000 00 14678888888888877876 88999
Q ss_pred EEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 127 EVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 127 ~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.|+.+-.++++.-. +...+ .++....+.++.||+|||.++.
T Consensus 165 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 99998764323321 22222 2344567889999999997654
No 230
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.55 E-value=5.2e-07 Score=93.59 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=37.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
..||+|||+|.|||+||..+++.|.+|+|+|+....||...
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~ 51 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTA 51 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHH
Confidence 46999999999999999999999999999999988887543
No 231
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.55 E-value=9e-07 Score=89.67 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=79.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 215 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG----------------------------------------- 215 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-----------------------------------------
Confidence 368999999999999999999999999999986543110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
+ ..++.+++.+..++.|+. +.++++|.+++..+ +...+...++ .++.+|.||+|
T Consensus 216 -----------------~--d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~g----~~l~~D~vl~a 269 (466)
T PRK07845 216 -----------------E--DADAAEVLEEVFARRGMT--VLKRSRAESVERTG-DGVVVTLTDG----RTVEGSHALMA 269 (466)
T ss_pred -----------------C--CHHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeC-CEEEEEECCC----cEEEecEEEEe
Confidence 0 145667788888888988 89999999998655 4555655443 26899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 270 ~G--~~pn~~~ 278 (466)
T PRK07845 270 VG--SVPNTAG 278 (466)
T ss_pred ec--CCcCCCC
Confidence 99 6777653
No 232
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.54 E-value=2.5e-06 Score=88.66 Aligned_cols=43 Identities=37% Similarity=0.482 Sum_probs=38.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
..||+|||+|++|+++|..+++.|.+|+|||+.+.+||.....
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~ 54 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWS 54 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccccc
Confidence 4799999999999999999999999999999998888865543
No 233
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.53 E-value=8.1e-07 Score=89.66 Aligned_cols=100 Identities=23% Similarity=0.303 Sum_probs=75.9
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------- 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP------------------------------------------- 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc-------------------------------------------
Confidence 6899999999999999999999999999998653210
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
..+ .+++.+++.+.+++.|++ ++++++|.+++..+ ..+.+...+ . ++.+|.||+|+
T Consensus 187 --------------~~~--~~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~d~vi~a~ 242 (444)
T PRK09564 187 --------------DSF--DKEITDVMEEELRENGVE--LHLNEFVKSLIGED-KVEGVVTDK-G----EYEADVVIVAT 242 (444)
T ss_pred --------------hhc--CHHHHHHHHHHHHHCCCE--EEcCCEEEEEecCC-cEEEEEeCC-C----EEEcCEEEECc
Confidence 000 157788888889999988 99999999996532 333343322 2 68999999999
Q ss_pred CCCCCCccC
Q 013303 163 GHFSVPRLA 171 (446)
Q Consensus 163 G~~s~p~~p 171 (446)
| ..|+.+
T Consensus 243 G--~~p~~~ 249 (444)
T PRK09564 243 G--VKPNTE 249 (444)
T ss_pred C--CCcCHH
Confidence 9 666644
No 234
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.53 E-value=5.8e-07 Score=93.85 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=87.9
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCC-CCC-------------CCCccCCccCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV-DPN-------------RYPVHSSLYKS 68 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~-~p~-------------~~~~~~~~y~~ 68 (446)
.||+|||+|.|||+||..+++.|.+|+|+||....||........-....+. .+. ..+........
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~~ 130 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQY 130 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHHH
Confidence 6999999999999999999999999999999876554322110000000000 000 00000000111
Q ss_pred eeecCCCCCccc--CCCCCCcCCC------CCCCCC-----------CCC---CCHHHHHHHHHHHHHHhCCCCcEEeCe
Q 013303 69 LRVNLPRELMGF--QAYPFVARNY------EGSVDL-----------RRY---PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (446)
Q Consensus 69 l~~~~~~~~~~~--~d~~~~~~~~------~~~~~~-----------~~~---~~~~~v~~yl~~~~~~~~l~~~i~~~~ 126 (446)
+..+.+..+-.+ -..||..... ..+... ..+ .++..+.+.|.+.+.+.++. +..++
T Consensus 131 l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~~ 208 (635)
T PLN00128 131 MCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQ--FFVEY 208 (635)
T ss_pred HHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCE--EEEee
Confidence 111111111000 1123321100 000000 001 24678888888888888877 88899
Q ss_pred EEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCCCc
Q 013303 127 EVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 127 ~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
.++.+-.++++... +...+ .+++...+.++.||+|||.+....
T Consensus 209 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~ 253 (635)
T PLN00128 209 FALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAY 253 (635)
T ss_pred EEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcccc
Confidence 99997655323322 33323 234556789999999999876543
No 235
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.52 E-value=7.6e-07 Score=93.02 Aligned_cols=66 Identities=18% Similarity=0.033 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcC-CC-ceEEEEEeC-CCceEEEEEcEEEEccCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SN-KWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~-~~-~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.....+...+...+.+.|.. +..+++|+++...+ ++ .+.|++.+. +++..++.+|.||+|+|.++.
T Consensus 229 vdp~rl~~al~~~A~~~Ga~--i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 229 MNDSRLNVALACTAALAGAA--VLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred EcHHHHHHHHHHHHHhCCcE--EEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 35567777777888888987 88899999998763 23 344565543 233447899999999998754
No 236
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.52 E-value=3.2e-07 Score=93.79 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=84.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCC--CCCCC----------CCccCCccCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG--VDPNR----------YPVHSSLYKSL 69 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g--~~p~~----------~~~~~~~y~~l 69 (446)
..||+|||+|.|||+||..+++ |.+|+|+|+....||........-....+ -.|.. ........+.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 4699999999999999999976 89999999988766543322110000000 00000 00000001111
Q ss_pred eecCCCCC--cccCCCCCCcCC-------CCCCC-CCC-----CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303 70 RVNLPREL--MGFQAYPFVARN-------YEGSV-DLR-----RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (446)
Q Consensus 70 ~~~~~~~~--~~~~d~~~~~~~-------~~~~~-~~~-----~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~ 134 (446)
..+.+..+ +.--..+|+... ...+. ..+ .-..+..+.+.|.+.+. .+++ +.+++.|+.+...
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~--i~~~~~v~~Li~~ 158 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVT--VVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCE--EEECeEhhheeec
Confidence 11111110 000112222100 00000 000 01235678888877765 4776 8889999998755
Q ss_pred CCCceE-EEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 135 ESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 135 ~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+ +... +...+.+++...+.++.||+|||.++.
T Consensus 159 ~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 N-GRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred C-CEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 4 5433 444444445557889999999997553
No 237
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.51 E-value=9.7e-07 Score=85.72 Aligned_cols=129 Identities=22% Similarity=0.402 Sum_probs=92.1
Q ss_pred eEEEECcChHHHHHHHHHHHC-------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCcee
Q 013303 4 HVAVIGAGAAGLVVGHELLRE-------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR 70 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~-------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~ 70 (446)
+|+|||||+.|...|-+|++. .++|+|+|+.+.+
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I--------------------------------- 203 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI--------------------------------- 203 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh---------------------------------
Confidence 699999999999999998753 1389999997754
Q ss_pred ecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (446)
Q Consensus 71 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~ 150 (446)
.+.| .+++.+|.++..++.|++ +++++.|++|+++. |++.+++
T Consensus 204 -------------------------Lp~~--~~~l~~~a~~~L~~~GV~--v~l~~~Vt~v~~~~-----v~~~~g~--- 246 (405)
T COG1252 204 -------------------------LPMF--PPKLSKYAERALEKLGVE--VLLGTPVTEVTPDG-----VTLKDGE--- 246 (405)
T ss_pred -------------------------ccCC--CHHHHHHHHHHHHHCCCE--EEcCCceEEECCCc-----EEEccCC---
Confidence 0111 157889999999999999 99999999998754 6665554
Q ss_pred EEEEEcEEEEccCCCCCCccCCCCCCCCC-CccEEEeeecCCCCCCCCCEEEEEec
Q 013303 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSW-PGKQMHSHNYRIPNPFQDQVVILIGH 205 (446)
Q Consensus 151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~-~g~~~hs~~~~~~~~~~~k~VvVVG~ 205 (446)
..+.++.+|-|+|....|..-.+-|.+.- .|+++.......+. ...|-++|-
T Consensus 247 ~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~---~~~IFa~GD 299 (405)
T COG1252 247 EEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPG---HPDIFAAGD 299 (405)
T ss_pred eeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCC---CCCeEEEec
Confidence 15999999999996555555454334422 36666555444432 245777773
No 238
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.51 E-value=1.3e-06 Score=87.98 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=77.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+..|..|++.|.+|+++++.+.+..
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 195 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP------------------------------------------ 195 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC------------------------------------------
Confidence 36899999999999999999999999999998653200
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++.+.+.+..++.|+. ++++++|.+++..+ +..++...++ ++.+|.||+|
T Consensus 196 ----------------~~--~~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~v~v~~~~g-----~i~~D~vl~a 249 (441)
T PRK08010 196 ----------------RE--DRDIADNIATILRDQGVD--IILNAHVERISHHE-NQVQVHSEHA-----QLAVDALLIA 249 (441)
T ss_pred ----------------Cc--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEcCC-----eEEeCEEEEe
Confidence 00 146677788888888988 99999999998754 4455543322 4789999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 250 ~G--~~pn~~ 257 (441)
T PRK08010 250 SG--RQPATA 257 (441)
T ss_pred ec--CCcCCC
Confidence 99 677654
No 239
>PRK07208 hypothetical protein; Provisional
Probab=98.50 E-value=2.7e-07 Score=94.04 Aligned_cols=42 Identities=43% Similarity=0.569 Sum_probs=39.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
++||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 579999999999999999999999999999999999998764
No 240
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.50 E-value=1.4e-06 Score=87.51 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=75.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||||++|+.+|..|++.|.+|+++++.+.+..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------------------- 174 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------------------- 174 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------------------
Confidence 6899999999999999999999999999998653300
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
+.+ ..++.+++.+..++.|++ +.++++|.+++..+ .. +...++. ++.||.||+|+
T Consensus 175 --------------~~~--~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~--~~-v~~~~g~----~i~~D~vi~a~ 229 (427)
T TIGR03385 175 --------------KLF--DEEMNQIVEEELKKHEIN--LRLNEEVDSIEGEE--RV-KVFTSGG----VYQADMVILAT 229 (427)
T ss_pred --------------ccc--CHHHHHHHHHHHHHcCCE--EEeCCEEEEEecCC--CE-EEEcCCC----EEEeCEEEECC
Confidence 000 146677788888888988 89999999997643 22 3444432 68999999999
Q ss_pred CCCCCCccC
Q 013303 163 GHFSVPRLA 171 (446)
Q Consensus 163 G~~s~p~~p 171 (446)
| ..|+.+
T Consensus 230 G--~~p~~~ 236 (427)
T TIGR03385 230 G--IKPNSE 236 (427)
T ss_pred C--ccCCHH
Confidence 9 666654
No 241
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=4e-07 Score=94.54 Aligned_cols=64 Identities=25% Similarity=0.245 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EE-EEeCCCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VK-SRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~-~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
++..+...|.+.+.+.++. +.+++.|+++...+ +... +. .....+....+.++.||+|||.++.
T Consensus 133 tG~~i~~~L~~~~~~~gi~--i~~~t~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 133 TGHAILHELVNNLRRYGVT--IYDEWYVMRLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred ChHHHHHHHHHHHhhCCCE--EEeCcEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 4578888888888888887 89999999987644 4322 22 1212333456899999999997654
No 242
>PTZ00367 squalene epoxidase; Provisional
Probab=98.50 E-value=6e-07 Score=92.23 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4699999999999999999999999999999964
No 243
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.49 E-value=1.5e-06 Score=87.67 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=74.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~----------------------------------------- 207 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH----------------------------------------- 207 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----------------------------------------
Confidence 468999999999999999999999999999987543110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+.+.++.+ .++. ++++++|.+++..+ +...+++.++. ++.+|.|++|
T Consensus 208 -------------------~d~~~~~~l~~~~~-~gI~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a 260 (452)
T TIGR03452 208 -------------------LDEDISDRFTEIAK-KKWD--IRLGRNVTAVEQDG-DGVTLTLDDGS----TVTADVLLVA 260 (452)
T ss_pred -------------------cCHHHHHHHHHHHh-cCCE--EEeCCEEEEEEEcC-CeEEEEEcCCC----EEEcCEEEEe
Confidence 00345555655443 4666 88999999998755 45566554432 6899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 261 ~G--~~pn~~~ 269 (452)
T TIGR03452 261 TG--RVPNGDL 269 (452)
T ss_pred ec--cCcCCCC
Confidence 99 7777643
No 244
>PTZ00058 glutathione reductase; Provisional
Probab=98.49 E-value=1.7e-06 Score=88.85 Aligned_cols=103 Identities=17% Similarity=0.350 Sum_probs=77.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+..|..|++.|.+|+++++.+.+..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~------------------------------------------ 274 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR------------------------------------------ 274 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc------------------------------------------
Confidence 46899999999999999999999999999998754310
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ .+++.+.+.+..++.|++ +.+++.|.+|+...++...+...++ ..++.+|.|++|
T Consensus 275 ----------------~~--d~~i~~~l~~~L~~~GV~--i~~~~~V~~I~~~~~~~v~v~~~~~---~~~i~aD~VlvA 331 (561)
T PTZ00058 275 ----------------KF--DETIINELENDMKKNNIN--IITHANVEEIEKVKEKNLTIYLSDG---RKYEHFDYVIYC 331 (561)
T ss_pred ----------------cC--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCCcEEEEECCC---CEEEECCEEEEC
Confidence 00 146677788888888988 9999999999865423344443222 136899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 332 ~G--r~Pn~~ 339 (561)
T PTZ00058 332 VG--RSPNTE 339 (561)
T ss_pred cC--CCCCcc
Confidence 99 667654
No 245
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.49 E-value=1.4e-06 Score=86.26 Aligned_cols=62 Identities=21% Similarity=0.143 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
.+...+..-+...+.+.|.. .+..++.|..++... ..|.|.+..+ ++.+|.||+|+|.++..
T Consensus 153 ~~p~~~~~~l~~~~~~~G~~-~~~~~~~~~~~~~~~-~~~~v~t~~g-----~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 153 LDPRLLTRALAAAAEELGVV-IIEGGTPVTSLERDG-RVVGVETDGG-----TIEADKVVLAAGAWAGE 214 (387)
T ss_pred CCHHHHHHHHHHHHHhcCCe-EEEccceEEEEEecC-cEEEEEeCCc-----cEEeCEEEEcCchHHHH
Confidence 34466777777777777743 156688999888652 4577777665 49999999999986543
No 246
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.49 E-value=1.7e-06 Score=89.44 Aligned_cols=42 Identities=38% Similarity=0.492 Sum_probs=37.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
..||+|||+|++|++||..+++.|++|+|||+.+.+||....
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccc
Confidence 469999999999999999999999999999999888775443
No 247
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.49 E-value=1.6e-06 Score=88.02 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=77.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~ 78 (446)
.++|+|||||+.|+.+|..+... |.+|+|+|+.+.+...
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-------------------------------------- 228 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-------------------------------------- 228 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc--------------------------------------
Confidence 46899999999999999766543 8999999987644100
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V 158 (446)
+ ..++.+.+.+..++.|+. +++++.|.++...+++...|.+.++. ++.+|.|
T Consensus 229 --------------------~--d~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~v 280 (486)
T TIGR01423 229 --------------------F--DSTLRKELTKQLRANGIN--IMTNENPAKVTLNADGSKHVTFESGK----TLDVDVV 280 (486)
T ss_pred --------------------c--CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCceEEEEEcCCC----EEEcCEE
Confidence 0 156778888888888988 99999999998754333455554432 6899999
Q ss_pred EEccCCCCCCccC
Q 013303 159 VVCNGHFSVPRLA 171 (446)
Q Consensus 159 VvAtG~~s~p~~p 171 (446)
|+|+| ..|+..
T Consensus 281 l~a~G--~~Pn~~ 291 (486)
T TIGR01423 281 MMAIG--RVPRTQ 291 (486)
T ss_pred EEeeC--CCcCcc
Confidence 99999 677754
No 248
>PRK14694 putative mercuric reductase; Provisional
Probab=98.48 E-value=4.9e-06 Score=84.47 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=75.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.. + +..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~---l~~-------------------------------------- 215 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-V---LSQ-------------------------------------- 215 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-C---CCC--------------------------------------
Confidence 4689999999999999999999999999998632 1 000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+.+.+..++.|++ ++++++|.+++..+ +...+.+.+ . ++.+|.||+|
T Consensus 216 -------------------~~~~~~~~l~~~l~~~GI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~D~vi~a 268 (468)
T PRK14694 216 -------------------EDPAVGEAIEAAFRREGIE--VLKQTQASEVDYNG-REFILETNA-G----TLRAEQLLVA 268 (468)
T ss_pred -------------------CCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEECC-C----EEEeCEEEEc
Confidence 0145677788888888988 89999999998654 444444322 1 5899999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 269 ~G--~~pn~~ 276 (468)
T PRK14694 269 TG--RTPNTE 276 (468)
T ss_pred cC--CCCCcC
Confidence 99 677765
No 249
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.48 E-value=1.2e-06 Score=83.01 Aligned_cols=153 Identities=19% Similarity=0.198 Sum_probs=83.5
Q ss_pred CeEEEECcChHHHHHHHHHHHC------CCcEEEEeeCCCcCceeeeCCCCCCCC-CCCCCCCCCccCCccC-----cee
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETESDP-LGVDPNRYPVHSSLYK-----SLR 70 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~------g~~v~v~e~~~~~GG~w~~~~~~~~~~-~g~~p~~~~~~~~~y~-----~l~ 70 (446)
.||||||||||||+||..|.+. .++|.|+|+...+||.-......+.-. --+.|...-...+.+. .+.
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~~ 156 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKFK 156 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccccee
Confidence 6999999999999999998764 478999999999998765421111000 0011111111111111 111
Q ss_pred ecCCCCCcccCCC-CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCC-
Q 013303 71 VNLPRELMGFQAY-PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKD- 147 (446)
Q Consensus 71 ~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~- 147 (446)
.-..+..+..+.+ |+.. .....++-.++.+||-+.|+.+|++ |.-+..+..|-.++++... |.+.+-.
T Consensus 157 fLt~~~~i~vPv~~pm~N-------hGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~edgsVkGiaT~D~GI 227 (621)
T KOG2415|consen 157 FLTGKGRISVPVPSPMDN-------HGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDEDGSVKGIATNDVGI 227 (621)
T ss_pred eeccCceeecCCCccccc-------CCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcCCCcEeeEeeccccc
Confidence 1111111111111 1211 1233456789999999999999998 6655555555554433221 2222110
Q ss_pred ---C-------ceEEEEEcEEEEccCC
Q 013303 148 ---D-------VVEEETFDAVVVCNGH 164 (446)
Q Consensus 148 ---~-------~~~~~~~d~VVvAtG~ 164 (446)
| ...++.+..-|.|-|+
T Consensus 228 ~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 228 SKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred cCCCCccccccccceecceeEEEeccc
Confidence 1 1135677777888775
No 250
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.48 E-value=2.2e-06 Score=86.93 Aligned_cols=104 Identities=26% Similarity=0.349 Sum_probs=76.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 207 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL----------------------------------------- 207 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------------------------------------
Confidence 478999999999999999999999999999987643110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+.+.+..++. ++ ++++++|.+++..++...+++..+ ++..++.+|.||+|
T Consensus 208 -------------------~d~~~~~~~~~~l~~~-I~--i~~~~~v~~i~~~~~~~v~~~~~~--~~~~~i~~D~vi~a 263 (460)
T PRK06292 208 -------------------EDPEVSKQAQKILSKE-FK--IKLGAKVTSVEKSGDEKVEELEKG--GKTETIEADYVLVA 263 (460)
T ss_pred -------------------hhHHHHHHHHHHHhhc-cE--EEcCCEEEEEEEcCCceEEEEEcC--CceEEEEeCEEEEc
Confidence 0145667777777766 76 899999999986541123332222 23357999999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+.+.
T Consensus 264 ~G--~~p~~~~ 272 (460)
T PRK06292 264 TG--RRPNTDG 272 (460)
T ss_pred cC--CccCCCC
Confidence 99 7787764
No 251
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.48 E-value=6.4e-07 Score=92.52 Aligned_cols=43 Identities=28% Similarity=0.464 Sum_probs=38.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
..||+|||+|.+|+++|..+++.|.+|+|||+....||.....
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s 48 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMS 48 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceecee
Confidence 4799999999999999999999999999999988888875443
No 252
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.48 E-value=2.1e-06 Score=89.16 Aligned_cols=42 Identities=38% Similarity=0.491 Sum_probs=37.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
..||+|||+|++|++||..+++.|.+|+|+||....||.-..
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 469999999999999999999999999999999988876443
No 253
>PRK12839 hypothetical protein; Provisional
Probab=98.47 E-value=5.8e-06 Score=85.61 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=38.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
..||+|||+|.+|+++|..+++.|.+|+|+|+...+||.....
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~ 50 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWS 50 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccc
Confidence 3689999999999999999999999999999998888876543
No 254
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.47 E-value=1.1e-06 Score=88.30 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=75.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~----------------------------------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLM----------------------------------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhc-----------------------------------------
Confidence 689999999999999999999999999999876431100
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
..++.+.+.+..++.|+. ++++++|.+++. ..|++.++. ++.+|.|++|+
T Consensus 188 -------------------d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~-----~~v~~~~g~----~~~~D~vl~a~ 237 (438)
T PRK13512 188 -------------------DADMNQPILDELDKREIP--YRLNEEIDAING-----NEVTFKSGK----VEHYDMIIEGV 237 (438)
T ss_pred -------------------CHHHHHHHHHHHHhcCCE--EEECCeEEEEeC-----CEEEECCCC----EEEeCEEEECc
Confidence 145677788888888988 999999999863 245554433 68999999999
Q ss_pred CCCCCCccC
Q 013303 163 GHFSVPRLA 171 (446)
Q Consensus 163 G~~s~p~~p 171 (446)
| ..|+.+
T Consensus 238 G--~~pn~~ 244 (438)
T PRK13512 238 G--THPNSK 244 (438)
T ss_pred C--CCcChH
Confidence 9 677654
No 255
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.47 E-value=1.3e-06 Score=86.96 Aligned_cols=99 Identities=28% Similarity=0.444 Sum_probs=78.8
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|||||+|+.|+.+|..|++.|++|+++|+.+++++....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------------------------------- 177 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------------------------------- 177 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh---------------------------------------
Confidence 68999999999999999999999999999998876554320
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE---EEEEeCCCceEEEEEcEEE
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK---VKSRKKDDVVEEETFDAVV 159 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~---v~~~~~~~~~~~~~~d~VV 159 (446)
.++.+.+.+..+.++++ +++++.+..|+... +... +....+ ..+.+|.++
T Consensus 178 --------------------~~~~~~~~~~l~~~gi~--~~~~~~~~~i~~~~-~~~~~~~~~~~~~----~~~~~d~~~ 230 (415)
T COG0446 178 --------------------PEVAEELAELLEKYGVE--LLLGTKVVGVEGKG-NTLVVERVVGIDG----EEIKADLVI 230 (415)
T ss_pred --------------------HHHHHHHHHHHHHCCcE--EEeCCceEEEEccc-CcceeeEEEEeCC----cEEEeeEEE
Confidence 46678888888888977 88999999998764 2222 333333 378999999
Q ss_pred EccCCCCCCc
Q 013303 160 VCNGHFSVPR 169 (446)
Q Consensus 160 vAtG~~s~p~ 169 (446)
+++| ..|+
T Consensus 231 ~~~g--~~p~ 238 (415)
T COG0446 231 IGPG--ERPN 238 (415)
T ss_pred Eeec--cccc
Confidence 9999 6665
No 256
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=8.7e-07 Score=92.12 Aligned_cols=65 Identities=20% Similarity=0.103 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC---CceE-EEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~---~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
++..+.+.|.+.+.+.++. +..++.|+.+...++ +... +...+ ..++...+.++.||+|||.++.
T Consensus 138 tG~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVE--FFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred CHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 4678889999999888887 999999999875431 2221 22222 2334457889999999997653
No 257
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.46 E-value=1.3e-06 Score=84.77 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEccCCCCCCc
Q 013303 103 EEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 103 ~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
..+.+-+.+++++. +.. ++++++|+.|++.+++.|.|.+.+.. ++..++.+++|+|+.|.++-+-
T Consensus 181 G~LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L 247 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFE--LHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL 247 (488)
T ss_pred HHHHHHHHHHHHhCCCcE--EEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHH
Confidence 34455555555555 666 99999999999998788999998743 4567899999999999876553
No 258
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.45 E-value=6.7e-07 Score=92.96 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=35.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC---CcEEEEeeCCCcCcee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSW 41 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g---~~v~v~e~~~~~GG~w 41 (446)
..||+|||||.|||+||..+++.| .+|+|+||....||..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 469999999999999999999998 8999999987666543
No 259
>PRK14727 putative mercuric reductase; Provisional
Probab=98.44 E-value=2.9e-06 Score=86.26 Aligned_cols=99 Identities=13% Similarity=0.169 Sum_probs=76.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.. + +..
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~---l~~-------------------------------------- 225 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-L---LFR-------------------------------------- 225 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-C---CCc--------------------------------------
Confidence 3689999999999999999999999999998742 1 000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
..+++.+.+.+..++.|+. ++++++|..++..+ +.+.+...++ ++.+|.||+|
T Consensus 226 -------------------~d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~i~aD~VlvA 278 (479)
T PRK14727 226 -------------------EDPLLGETLTACFEKEGIE--VLNNTQASLVEHDD-NGFVLTTGHG-----ELRAEKLLIS 278 (479)
T ss_pred -------------------chHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeC-CEEEEEEcCC-----eEEeCEEEEc
Confidence 0146777888888888988 89999999998655 5555554322 5889999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 279 ~G--~~pn~~ 286 (479)
T PRK14727 279 TG--RHANTH 286 (479)
T ss_pred cC--CCCCcc
Confidence 99 677654
No 260
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.44 E-value=1.2e-06 Score=81.08 Aligned_cols=41 Identities=37% Similarity=0.579 Sum_probs=37.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
+++|+|||+|++||+||..|+++ ++|++||...++||.-+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccce
Confidence 46899999999999999999876 899999999999997654
No 261
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=9.9e-07 Score=91.70 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=34.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 39 (446)
+.||+|||+|.|||+||..+++.|.+|+|+||....||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 56999999999999999999999999999999876543
No 262
>PLN02815 L-aspartate oxidase
Probab=98.44 E-value=8e-07 Score=91.99 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=84.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CC----------CCCCccCCccCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DP----------NRYPVHSSLYKSL 69 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~--~p----------~~~~~~~~~y~~l 69 (446)
..||+|||+|.|||+||..+++.| +|+|+|+....||.-......-....+. .+ +..+......+.+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~ 107 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVV 107 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHHH
Confidence 369999999999999999999999 9999999887766332221100000000 00 0000000001111
Q ss_pred eecCCCCCccc--CCCCCCcCC-------CCCCCC-CC----CCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEc
Q 013303 70 RVNLPRELMGF--QAYPFVARN-------YEGSVD-LR----RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV 134 (446)
Q Consensus 70 ~~~~~~~~~~~--~d~~~~~~~-------~~~~~~-~~----~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~ 134 (446)
..+.+..+-.+ -..+|.... ...+.. .+ .-.++..+...|.+.+.+. ++. +..++.++.+-.+
T Consensus 108 ~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~--i~~~~~~~~Li~~ 185 (594)
T PLN02815 108 CTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNIT--FFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCE--EEeceEhheeeee
Confidence 11111110000 011221100 000000 00 0124677888887777654 676 8889999998764
Q ss_pred CCCc----eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 135 ESNK----WKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 135 ~~~~----~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+++. .-+...+ .++....+.++.||+|||.+..
T Consensus 186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 3232 1233322 2344567889999999997553
No 263
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.44 E-value=9e-07 Score=81.04 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=93.2
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCCCC-----cc-------CC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNRYP-----VH-------SS 64 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-------~g~~p~~~~-----~~-------~~ 64 (446)
.|+|||+|.|||+|+..+...|-.|+++|+...+||.-.......+-. .+..-+..+ +. ..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 599999999999999999998877999999999998765432211100 000000000 00 01
Q ss_pred ccCceeecCCCCCcccC-CCCCCc---------CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC----CCcEEeCeEEEE
Q 013303 65 LYKSLRVNLPRELMGFQ-AYPFVA---------RNYEGSVDLRRYPGHEEVLRYLQNFAREFGV----DQVVRLHTEVLN 130 (446)
Q Consensus 65 ~y~~l~~~~~~~~~~~~-d~~~~~---------~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l----~~~i~~~~~V~~ 130 (446)
..+.|..+++...--+. .|.... .....++.....|++.++...|....+++.- .-.|..|++|+.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 11222222221110000 011000 0000122334455666666666665555422 124788999999
Q ss_pred EEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 131 ARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 131 v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
|.+..+...-|.+.+..++...+.++.||+|||.|+.
T Consensus 171 il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 171 ILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 9976633455777776666678999999999998664
No 264
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.43 E-value=2.4e-07 Score=94.18 Aligned_cols=43 Identities=42% Similarity=0.541 Sum_probs=40.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
++||+|||||++||+||..|++.|++|+|+||++.+||..+..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~ 45 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF 45 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEE
Confidence 5899999999999999999999999999999999999976653
No 265
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.42 E-value=9.2e-07 Score=91.82 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=84.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CC----------CCCCccCCccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGV--DP----------NRYPVHSSLYK 67 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~--~p----------~~~~~~~~~y~ 67 (446)
..||+|||||.|||+||..+++. |.+|+|+||....||.............+. .+ +..+.......
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 83 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE 83 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 46999999999999999999987 479999999876665443321100000000 00 00000000011
Q ss_pred ceeecCCCCC--cccCCCCCCcCCC--------CCCCCCCC-C---CCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEE
Q 013303 68 SLRVNLPREL--MGFQAYPFVARNY--------EGSVDLRR-Y---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (446)
Q Consensus 68 ~l~~~~~~~~--~~~~d~~~~~~~~--------~~~~~~~~-~---~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~ 132 (446)
.+..+.+..+ +.--..+|..... ......+. + .++..+...|.+.+.+. ++. +..++.|+++.
T Consensus 84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li 161 (582)
T PRK09231 84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQ--RFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcE--EEeCeEEEEEE
Confidence 1111111110 0001223321100 00000000 1 14567777777766654 565 78899999987
Q ss_pred EcCCCceE-EEE-EeCCCceEEEEEcEEEEccCCCCCC
Q 013303 133 LVESNKWK-VKS-RKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 133 ~~~~~~~~-v~~-~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
..+ +... +.. ...++....+.++.||+|||.++..
T Consensus 162 ~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 162 VDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred EeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 654 4332 222 2223345678999999999976643
No 266
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.42 E-value=1.6e-06 Score=82.53 Aligned_cols=37 Identities=35% Similarity=0.491 Sum_probs=34.3
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 37 (446)
++.+|+|||||.+|+++|..|.+.|++|+|+|+.+.+
T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4679999999999999999999999999999997655
No 267
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.40 E-value=2.1e-07 Score=69.75 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=49.4
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcc----------ccccCCCC-CCeeeccceeEEccCCc---EEecCC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE----------THEKQPGY-DNMWLHSMVERANEDGT---VVFRNG 264 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~----------~~~~~~~~-~~v~~~~~v~~i~~~~~---v~~~dG 264 (446)
+|+|||+|.+|+|+|..|++.+++|+++++++... ..+.+.+. -++..+..++++..++. |.|+||
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 68999999999999999999999999999988610 01112222 26677788888876543 777776
No 268
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.40 E-value=2e-06 Score=92.45 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=77.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+...
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~----------------------------------------- 178 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK----------------------------------------- 178 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh-----------------------------------------
Confidence 368999999999999999999999999999986532000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
. -.+++.+.+.+..++.|+. +++++.|+++.... ....|++.++. ++.+|.||+|
T Consensus 179 ----------------~--ld~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~-~~~~v~~~dG~----~i~~D~Vi~a 233 (785)
T TIGR02374 179 ----------------Q--LDQTAGRLLQRELEQKGLT--FLLEKDTVEIVGAT-KADRIRFKDGS----SLEADLIVMA 233 (785)
T ss_pred ----------------h--cCHHHHHHHHHHHHHcCCE--EEeCCceEEEEcCC-ceEEEEECCCC----EEEcCEEEEC
Confidence 0 0135567777888888998 99999999887543 33445555543 7999999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 234 ~G--~~Pn~~ 241 (785)
T TIGR02374 234 AG--IRPNDE 241 (785)
T ss_pred CC--CCcCcH
Confidence 99 677654
No 269
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.40 E-value=2.9e-06 Score=88.22 Aligned_cols=43 Identities=37% Similarity=0.414 Sum_probs=39.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
..||+|||+|++|+++|..+++.|.+|+|+|+...+||.....
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s 58 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS 58 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence 4699999999999999999999999999999998888877554
No 270
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.39 E-value=1.6e-06 Score=89.95 Aligned_cols=163 Identities=16% Similarity=0.144 Sum_probs=85.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccCCccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYK 67 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~------------~~~~~~~y~ 67 (446)
..||+|||||.|||+||..+++. |.+|+|+||....||.............+..-+. .+......+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 46999999999999999999987 5899999998776664432211100000000000 000000001
Q ss_pred ceeecCCCCCccc--CCCCCCcCCC--------CCCCCCC-CC---CCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEE
Q 013303 68 SLRVNLPRELMGF--QAYPFVARNY--------EGSVDLR-RY---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (446)
Q Consensus 68 ~l~~~~~~~~~~~--~d~~~~~~~~--------~~~~~~~-~~---~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~ 132 (446)
.+..+.+..+-.+ -..||..... ......+ .+ .++..+...|.+.+.+. ++. +..++.|+.+.
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li 160 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIM--RYDEWFVTDLL 160 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCE--EEeCeEEEEEE
Confidence 1111111111000 1122221100 0000000 11 25678888888777664 565 77889999987
Q ss_pred EcCCCceE-EEE-EeCCCceEEEEEcEEEEccCCCCC
Q 013303 133 LVESNKWK-VKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 133 ~~~~~~~~-v~~-~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
..+ +... +.. ...++....+.++.||+|||.++.
T Consensus 161 ~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 161 VDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred eeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 654 4222 222 222344567899999999997664
No 271
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.39 E-value=5.6e-06 Score=92.49 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=37.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w 41 (446)
..||+|||+|.||++||..+++.|.+|+|+||.+..||.-
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 4699999999999999999999999999999998888764
No 272
>PRK13748 putative mercuric reductase; Provisional
Probab=98.39 E-value=3.9e-06 Score=87.27 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=77.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.. + +..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~---l~~-------------------------------------- 307 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST-L---FFR-------------------------------------- 307 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-c---ccc--------------------------------------
Confidence 4689999999999999999999999999999742 1 000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
...++.+.+.+..++.|+. ++++++|.+++..+ +.+.+...++ ++.+|.||+|
T Consensus 308 -------------------~d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~-~~~~v~~~~~-----~i~~D~vi~a 360 (561)
T PRK13748 308 -------------------EDPAIGEAVTAAFRAEGIE--VLEHTQASQVAHVD-GEFVLTTGHG-----ELRADKLLVA 360 (561)
T ss_pred -------------------cCHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEecCC-----eEEeCEEEEc
Confidence 0146677888888888988 89999999998654 5555544322 5899999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 361 ~G--~~pn~~~ 369 (561)
T PRK13748 361 TG--RAPNTRS 369 (561)
T ss_pred cC--CCcCCCC
Confidence 99 7777653
No 273
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.39 E-value=4.7e-06 Score=84.72 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=77.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++|+|||||+.|+.+|..|++.|.+|+++++. .+. .
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l---~---------------------------------------- 216 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL---R---------------------------------------- 216 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc---c----------------------------------------
Confidence 57999999999999999999999999999873 220 0
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
.+ ..++.+++.+..++.|++ +++++.+..+...+ +...|+..++.+ ..++.+|.||+|+
T Consensus 217 ---------------~~--d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~~~~-~~~i~~D~vl~a~ 275 (484)
T TIGR01438 217 ---------------GF--DQDCANKVGEHMEEHGVK--FKRQFVPIKVEQIE-AKVKVTFTDSTN-GIEEEYDTVLLAI 275 (484)
T ss_pred ---------------cc--CHHHHHHHHHHHHHcCCE--EEeCceEEEEEEcC-CeEEEEEecCCc-ceEEEeCEEEEEe
Confidence 00 146778888888888988 99999999988654 444555544321 2368999999999
Q ss_pred CCCCCCccC
Q 013303 163 GHFSVPRLA 171 (446)
Q Consensus 163 G~~s~p~~p 171 (446)
| ..|+..
T Consensus 276 G--~~pn~~ 282 (484)
T TIGR01438 276 G--RDACTR 282 (484)
T ss_pred c--CCcCCC
Confidence 9 677754
No 274
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.37 E-value=4.3e-07 Score=91.80 Aligned_cols=41 Identities=29% Similarity=0.587 Sum_probs=38.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~ 43 (446)
++|+|||||+|||+||+.|++.| ++|+|+|+++++||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 57999999999999999999987 899999999999998765
No 275
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.37 E-value=6.8e-07 Score=88.04 Aligned_cols=41 Identities=34% Similarity=0.587 Sum_probs=38.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~ 43 (446)
++|||||||++||+||..|.+.+ .+++|||+.+++||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 57999999999999999999999 999999999999998775
No 276
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.37 E-value=3.2e-06 Score=86.66 Aligned_cols=41 Identities=32% Similarity=0.476 Sum_probs=36.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
..||+|||+| +||+||.++++.|.+|+|+|+.+..||.-..
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~ 47 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY 47 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence 4699999999 9999999999999999999999887765443
No 277
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.36 E-value=5.2e-06 Score=84.76 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=77.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++. .+. .
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l---~--------------------------------------- 218 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL---R--------------------------------------- 218 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc---c---------------------------------------
Confidence 368999999999999999999999999999863 220 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.+ ..++.+.+.+..++.++. +..++.|..+...+ +...+.+.++. ++.+|.|++|
T Consensus 219 ----------------~~--d~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~i~~D~vl~a 273 (499)
T PTZ00052 219 ----------------GF--DRQCSEKVVEYMKEQGTL--FLEGVVPINIEKMD-DKIKVLFSDGT----TELFDTVLYA 273 (499)
T ss_pred ----------------cC--CHHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcC-CeEEEEECCCC----EEEcCEEEEe
Confidence 00 145677788888888988 89999999988654 44455554432 6789999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| ..|+...
T Consensus 274 ~G--~~pn~~~ 282 (499)
T PTZ00052 274 TG--RKPDIKG 282 (499)
T ss_pred eC--CCCCccc
Confidence 99 6777653
No 278
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.36 E-value=1.5e-06 Score=90.52 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=31.3
Q ss_pred EEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (446)
Q Consensus 5 V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G 38 (446)
|+|||+|.|||+||..+++.|.+|+|+||...++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 7999999999999999999999999999987453
No 279
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.36 E-value=9.3e-07 Score=91.05 Aligned_cols=38 Identities=29% Similarity=0.242 Sum_probs=33.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 40 (446)
..||+|||+|.|||+||..++ .|.+|+|+||....||.
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 469999999999999999986 59999999998876664
No 280
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.35 E-value=7e-06 Score=81.85 Aligned_cols=62 Identities=19% Similarity=0.060 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
+.....+...+.+.+.+.|+. +..+++|+++...+++.+ .|.+.++ ++.++.||||+|.++.
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~~~v~t~~g-----~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVD--IIQNCEVTGFIRRDGGRVIGVETTRG-----FIGAKKVGVAVAGHSS 241 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEeCCc-----eEECCEEEECCChhhH
Confidence 344556666677788888987 888999999976532443 3555443 5899999999997553
No 281
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.35 E-value=1.1e-06 Score=90.06 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
++..+.+.|.+.+.+. ++. +..++.|+.+..++ +.+. +.+.+. +....+.++.||+|||.++.
T Consensus 134 ~G~~l~~~L~~~~~~~~gV~--i~~~~~v~~Li~~~-g~v~Gv~~~~~-~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 134 AGAAIMRALIAAVRATPSIT--VLEGAEARRLLVDD-GAVAGVLAATA-GGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred CHHHHHHHHHHHHHhCCCCE--EEECcChhheeecC-CEEEEEEEEeC-CeEEEEECCEEEEcCCCCcC
Confidence 4567888888877764 777 88899999886543 4332 333332 22346889999999997653
No 282
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.35 E-value=1.5e-05 Score=83.34 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=76.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+..|..|++.|.+|+++|+.+.+...
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~----------------------------------------- 350 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL----------------------------------------- 350 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-----------------------------------------
Confidence 368999999999999999999999999999997654110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCC-C----------
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKD-D---------- 148 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~-~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~-~---------- 148 (446)
-..++.+++.... ++.++. ++.++.|.+|+..+++. .++...+.. +
T Consensus 351 -------------------~d~eis~~l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 409 (659)
T PTZ00153 351 -------------------LDADVAKYFERVFLKSKPVR--VHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMN 409 (659)
T ss_pred -------------------CCHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecCCceEEEEEEeccccccccccccccc
Confidence 0145667777654 567887 99999999998654222 334332210 1
Q ss_pred ceEEEEEcEEEEccCCCCCCccCC
Q 013303 149 VVEEETFDAVVVCNGHFSVPRLAQ 172 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~~p~ 172 (446)
...++.+|.|++|+| .+|+...
T Consensus 410 ~~~~i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 410 DIKETYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred cceEEEcCEEEEEEC--cccCCcc
Confidence 123689999999999 7777654
No 283
>PLN02546 glutathione reductase
Probab=98.34 E-value=5.1e-06 Score=85.44 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=76.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+..|..|++.|.+|+++++.+.+...
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~----------------------------------------- 290 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG----------------------------------------- 290 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------------------------------
Confidence 468999999999999999999999999999987643110
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
-.+++.+++.+..++.|++ ++++++|.++....++...+.. .++ ....+|.||+|
T Consensus 291 -------------------~d~~~~~~l~~~L~~~GV~--i~~~~~v~~i~~~~~g~v~v~~--~~g--~~~~~D~Viva 345 (558)
T PLN02546 291 -------------------FDEEVRDFVAEQMSLRGIE--FHTEESPQAIIKSADGSLSLKT--NKG--TVEGFSHVMFA 345 (558)
T ss_pred -------------------cCHHHHHHHHHHHHHCCcE--EEeCCEEEEEEEcCCCEEEEEE--CCe--EEEecCEEEEe
Confidence 0156777888888888988 9999999999865424333332 221 23458999999
Q ss_pred cCCCCCCccC
Q 013303 162 NGHFSVPRLA 171 (446)
Q Consensus 162 tG~~s~p~~p 171 (446)
+| ..|+..
T Consensus 346 ~G--~~Pnt~ 353 (558)
T PLN02546 346 TG--RKPNTK 353 (558)
T ss_pred ec--cccCCC
Confidence 99 677764
No 284
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.33 E-value=4.3e-06 Score=90.01 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=77.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++++|||||+.|+.+|..|++.|.+|+|+|+.+.+-..
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~----------------------------------------- 183 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE----------------------------------------- 183 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh-----------------------------------------
Confidence 368999999999999999999999999999986532000
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
. -..++.+.+.+..++.|+. +++++.|.+|....+ ....+.+.++. ++.+|.||+
T Consensus 184 ----------------~--ld~~~~~~l~~~L~~~GV~--v~~~~~v~~I~~~~~~~~~~v~~~dG~----~i~~D~Vv~ 239 (847)
T PRK14989 184 ----------------Q--LDQMGGEQLRRKIESMGVR--VHTSKNTLEIVQEGVEARKTMRFADGS----ELEVDFIVF 239 (847)
T ss_pred ----------------h--cCHHHHHHHHHHHHHCCCE--EEcCCeEEEEEecCCCceEEEEECCCC----EEEcCEEEE
Confidence 0 0146677888888889998 999999999975431 22345555443 799999999
Q ss_pred ccCCCCCCcc
Q 013303 161 CNGHFSVPRL 170 (446)
Q Consensus 161 AtG~~s~p~~ 170 (446)
|+| .+|+.
T Consensus 240 A~G--~rPn~ 247 (847)
T PRK14989 240 STG--IRPQD 247 (847)
T ss_pred CCC--cccCc
Confidence 999 67765
No 285
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.32 E-value=2.8e-06 Score=85.29 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s 166 (446)
....+.+.|.+.+++.+++ |+++++|+++..++++.+.+-+....+ ...+.++.||+|||.++
T Consensus 121 ~g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~g~v~gv~~~~~-~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 121 GGKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFDGAHDGPLTTVG-THRITTQALVLAAGGLG 183 (432)
T ss_pred CHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCCCeEEEEEEcCC-cEEEEcCEEEEcCCCcc
Confidence 3567888999999999988 999999999986531334433322111 24788999999999654
No 286
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.32 E-value=3.1e-06 Score=87.15 Aligned_cols=38 Identities=39% Similarity=0.529 Sum_probs=33.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~ 40 (446)
..||+|||+|.|||+||..+++. .+|+|+||....||.
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 46999999999999999999886 899999998876663
No 287
>PLN02268 probable polyamine oxidase
Probab=98.31 E-value=6.5e-07 Score=90.07 Aligned_cols=42 Identities=29% Similarity=0.466 Sum_probs=39.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
++|+|||||.|||+||+.|.+.|++|+|+|+++++||.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~ 42 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTD 42 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeec
Confidence 489999999999999999999999999999999999987653
No 288
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.31 E-value=2.1e-06 Score=90.11 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
++..+...|.+.+.+.++. +..++.|+++..++ +. .-+...+ .+++...+.++.||+|||.+..
T Consensus 156 tG~~l~~~L~~~~~~~gv~--i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVP--VHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred cHHHHHHHHHHHHHhCCCE--EEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 3456777788888888887 89999999997654 43 2233433 2344567889999999997654
No 289
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.29 E-value=8.4e-07 Score=90.02 Aligned_cols=42 Identities=31% Similarity=0.489 Sum_probs=39.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~~ 43 (446)
++||+|||||+|||+||..|.+. |++|+|+|+++++||....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 57999999999999999999998 9999999999999998765
No 290
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.28 E-value=1.6e-05 Score=79.67 Aligned_cols=94 Identities=30% Similarity=0.398 Sum_probs=71.9
Q ss_pred CeEEEECcChHHHHHHHHHHH--------------CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLR--------------EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS 68 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~--------------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~ 68 (446)
++|+|||||++|+..|..|+. .+.+|+++++.+.+..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~----------------------------- 224 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG----------------------------- 224 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-----------------------------
Confidence 389999999999999999875 3688999998754311
Q ss_pred eeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303 69 LRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (446)
Q Consensus 69 l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~ 148 (446)
.+ .+++.+++.+..++.|++ ++++++|.++... .|.+.++.
T Consensus 225 -----------------------------~~--~~~~~~~~~~~L~~~gV~--v~~~~~v~~v~~~-----~v~~~~g~- 265 (424)
T PTZ00318 225 -----------------------------SF--DQALRKYGQRRLRRLGVD--IRTKTAVKEVLDK-----EVVLKDGE- 265 (424)
T ss_pred -----------------------------cC--CHHHHHHHHHHHHHCCCE--EEeCCeEEEEeCC-----EEEECCCC-
Confidence 01 146678888888889998 9999999998642 35555543
Q ss_pred ceEEEEEcEEEEccCCCCCCc
Q 013303 149 VVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 149 ~~~~~~~d~VVvAtG~~s~p~ 169 (446)
++.+|.||+|+| ..|+
T Consensus 266 ---~i~~d~vi~~~G--~~~~ 281 (424)
T PTZ00318 266 ---VIPTGLVVWSTG--VGPG 281 (424)
T ss_pred ---EEEccEEEEccC--CCCc
Confidence 789999999999 4454
No 291
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.27 E-value=3.4e-06 Score=82.92 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=33.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG 39 (446)
.+|+|||||.+|+.+|..|++.|++|+|||+.+..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 4799999999999999999999999999998776544
No 292
>PRK07233 hypothetical protein; Provisional
Probab=98.27 E-value=8.9e-07 Score=89.01 Aligned_cols=40 Identities=38% Similarity=0.689 Sum_probs=37.8
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
+|+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6999999999999999999999999999999999998754
No 293
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=9.7e-07 Score=86.79 Aligned_cols=41 Identities=39% Similarity=0.591 Sum_probs=38.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
++|+|+|||.|||+||.+|+++|++|+|+|+++.+||....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 58999999999999999999999999999999999997554
No 294
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.26 E-value=3.9e-06 Score=78.80 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=31.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
..||+|||||.+|.+.|..|++.|.+|.|+||.
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 368999999999999999999999999999985
No 295
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.26 E-value=1.1e-06 Score=89.29 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=38.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHC------CCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~------g~~v~v~e~~~~~GG~w~~ 43 (446)
|++|+|||||+|||+||+.|.+. |.+|+|+|+++++||....
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 57899999999999999999986 3799999999999998765
No 296
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.25 E-value=1.2e-06 Score=85.15 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=38.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
+.||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 469999999999999999999999999999999999996554
No 297
>PRK10262 thioredoxin reductase; Provisional
Probab=98.24 E-value=1.3e-05 Score=77.29 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+ ..
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~----~~-------------------------------------- 183 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF----RA-------------------------------------- 183 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc----CC--------------------------------------
Confidence 468999999999999999999999999999986422 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC--CceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~--~~~~~~~~d~VV 159 (446)
...+.+.+.+..++.++. +.+++.|.++.....+.-.|++.+.. +...++.+|.||
T Consensus 184 --------------------~~~~~~~~~~~l~~~gV~--i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv 241 (321)
T PRK10262 184 --------------------EKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 241 (321)
T ss_pred --------------------CHHHHHHHHhhccCCCeE--EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEE
Confidence 023445566666667777 88899999997643122235555432 234579999999
Q ss_pred EccCCCCCCccC
Q 013303 160 VCNGHFSVPRLA 171 (446)
Q Consensus 160 vAtG~~s~p~~p 171 (446)
+|+| ..|+..
T Consensus 242 ~a~G--~~p~~~ 251 (321)
T PRK10262 242 VAIG--HSPNTA 251 (321)
T ss_pred EEeC--CccChh
Confidence 9999 676654
No 298
>PLN02576 protoporphyrinogen oxidase
Probab=98.22 E-value=1.4e-06 Score=89.14 Aligned_cols=42 Identities=38% Similarity=0.586 Sum_probs=39.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||||++||+||..|.+. |++|+|+|+++++||....
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 46899999999999999999999 9999999999999998665
No 299
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.20 E-value=1.5e-06 Score=88.86 Aligned_cols=42 Identities=38% Similarity=0.448 Sum_probs=39.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
+||+|||||++||+||..|++.|++|+|+|+++.+||.....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~ 43 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF 43 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccee
Confidence 799999999999999999999999999999999999976543
No 300
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.19 E-value=4.4e-06 Score=84.04 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCC
Q 013303 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH 164 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~ 164 (446)
..+..+.++|.+.+.+.|++ +..+ +|+.+...+ +++...+...++ .++++|.||-|||.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~-~g~i~~v~~~~g--~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDE-DGRITAVRLDDG--RTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-T-TSEEEEEEETTS--EEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcC-CCCEEEEEECCC--CEEEEeEEEECCCc
Confidence 47799999999999999998 5544 688888776 555544444332 47999999999994
No 301
>PLN02568 polyamine oxidase
Probab=98.17 E-value=2.4e-06 Score=87.56 Aligned_cols=43 Identities=30% Similarity=0.546 Sum_probs=39.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC-----CcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g-----~~v~v~e~~~~~GG~w~~~ 44 (446)
.+||+|||||++||+||+.|++.| ++|+|||+++.+||.+...
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 468999999999999999999887 8999999999999987754
No 302
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.16 E-value=2.8e-06 Score=82.22 Aligned_cols=42 Identities=33% Similarity=0.619 Sum_probs=37.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~ 43 (446)
..+|||||||.|||+||..|.+.|+ +++|||..+++||..+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 3589999999999999999998774 89999999999998765
No 303
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.15 E-value=2.1e-05 Score=80.68 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=71.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||+.|+.+|..|++.+.+|+++++.+.+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------------------------------------------- 388 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------------------------------------------- 388 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-------------------------------------------
Confidence 3689999999999999999999999999999754220
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VV 159 (446)
. ...+.+.+++ .|+. +++++.|.++...++....|++.++. ++.+++.+|.|+
T Consensus 389 -------------------~----~~~l~~~l~~~~gV~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi 443 (515)
T TIGR03140 389 -------------------A----DKVLQDKLKSLPNVD--ILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVF 443 (515)
T ss_pred -------------------h----hHHHHHHHhcCCCCE--EEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEE
Confidence 0 0123333443 4777 89999999997643122236665542 344579999999
Q ss_pred EccCCCCCCccCC
Q 013303 160 VCNGHFSVPRLAQ 172 (446)
Q Consensus 160 vAtG~~s~p~~p~ 172 (446)
+|+| ..|+..-
T Consensus 444 ~a~G--~~Pn~~~ 454 (515)
T TIGR03140 444 VQIG--LVPNTEW 454 (515)
T ss_pred EEeC--CcCCchH
Confidence 9999 7776543
No 304
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.14 E-value=2e-06 Score=88.13 Aligned_cols=40 Identities=35% Similarity=0.451 Sum_probs=37.4
Q ss_pred EEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 5 V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
|+|||||.+||+||..|++.|++|+|+|+++.+||.....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~ 40 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVL 40 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEE
Confidence 6999999999999999999999999999999999987653
No 305
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.11 E-value=3.4e-05 Score=73.36 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||+|++|+-+|..|++.+.+|+++++.+.+ ..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~----~~-------------------------------------- 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF----RA-------------------------------------- 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc----Cc--------------------------------------
Confidence 368999999999999999999999999999985421 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV 159 (446)
... +.+.+++. ++. +.++++|.++.... ..-.+++.+. .++..++.+|.||
T Consensus 179 --------------------~~~----~~~~l~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 179 --------------------EKI----LLDRLRKNPNIE--FLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred --------------------CHH----HHHHHHhCCCeE--EEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEE
Confidence 012 22333444 776 88899999997643 2223444432 2344679999999
Q ss_pred EccCCCCCCcc
Q 013303 160 VCNGHFSVPRL 170 (446)
Q Consensus 160 vAtG~~s~p~~ 170 (446)
+|+| ..|+.
T Consensus 232 ~a~G--~~~~~ 240 (300)
T TIGR01292 232 IAIG--HEPNT 240 (300)
T ss_pred EeeC--CCCCh
Confidence 9999 56654
No 306
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.10 E-value=3.1e-06 Score=85.62 Aligned_cols=40 Identities=40% Similarity=0.573 Sum_probs=37.4
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
+|+|||||++||+||..|.+.|++|+|+|+.+.+||.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999997653
No 307
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.08 E-value=4.1e-06 Score=85.65 Aligned_cols=42 Identities=38% Similarity=0.480 Sum_probs=39.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
.||+|||||.+||++|..|++.|++|+|+|+++.+||.....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~ 42 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYF 42 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEe
Confidence 489999999999999999999999999999999999987653
No 308
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=4.4e-06 Score=76.80 Aligned_cols=43 Identities=26% Similarity=0.447 Sum_probs=40.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
++|++|||||.+|+..|..|++.|.+|.|+|+++++||.+...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde 43 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence 5799999999999999999999999999999999999998753
No 309
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.07 E-value=1.8e-05 Score=82.18 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=30.4
Q ss_pred eEEEECcChHHHHHHHHHH----HCCCcEEEEeeCCC
Q 013303 4 HVAVIGAGAAGLVVGHELL----REGHTVVVYEKGEQ 36 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~----~~g~~v~v~e~~~~ 36 (446)
||+|||||.|||+||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 310
>PLN02676 polyamine oxidase
Probab=98.07 E-value=4.2e-06 Score=85.01 Aligned_cols=43 Identities=23% Similarity=0.486 Sum_probs=39.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~ 44 (446)
.+||+|||||++||+||+.|++.|. +|+|+|+++.+||.+...
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~ 69 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKA 69 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceee
Confidence 4789999999999999999999998 699999999999988754
No 311
>PLN02529 lysine-specific histone demethylase 1
Probab=98.06 E-value=4.6e-06 Score=87.59 Aligned_cols=43 Identities=37% Similarity=0.502 Sum_probs=39.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
.++|+|||||++||+||+.|++.|++|+|+|+++++||.....
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~ 202 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQ 202 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeee
Confidence 4799999999999999999999999999999999999876543
No 312
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.02 E-value=1e-05 Score=78.20 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=31.9
Q ss_pred EEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEccC
Q 013303 122 VRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNG 163 (446)
Q Consensus 122 i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAtG 163 (446)
++.+++|++++..+++.|++++.+.. ++..++.+|.||+|||
T Consensus 296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 296 LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 77799999999887569999999854 4667899999999999
No 313
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.01 E-value=1.2e-05 Score=82.23 Aligned_cols=37 Identities=32% Similarity=0.362 Sum_probs=34.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G 38 (446)
+.||+|||||.|||.||..+++.|++|+|+||....+
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 5799999999999999999999999999999987654
No 314
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.01 E-value=3e-05 Score=84.76 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=32.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
..||+|||||.|||+||..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 46999999999999999999999999999999763
No 315
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.01 E-value=7.9e-05 Score=72.04 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (446)
Q Consensus 103 ~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~ 167 (446)
.++.+-+.++.+.+|++ ++|+++|..+...++....|.+.++. ++.+|+||+|.|+.+.
T Consensus 173 ~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~~~~v~~~~g~----~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNEVLGVKLTKGE----EIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCceEEEEccCCc----EEecCEEEEccCcchH
Confidence 67888899999999988 99999999999876334566666654 8999999999998443
No 316
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.99 E-value=0.00012 Score=71.94 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=67.2
Q ss_pred CeEEEECcChHHHHHHHHHHH----CC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLR----EG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~----~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~ 76 (446)
++|+|||||++|+.+|..|++ .| .+|+++ ..+.+.
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-------------------------------------- 186 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL-------------------------------------- 186 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc--------------------------------------
Confidence 589999999999999999975 34 478888 322110
Q ss_pred CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d 156 (446)
+. ...++.+.+.+..++.+++ +..+++|..++. + .|.+.++. ++.+|
T Consensus 187 --------------------~~--~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~---~--~v~~~~g~----~i~~D 233 (364)
T TIGR03169 187 --------------------PG--FPAKVRRLVLRLLARRGIE--VHEGAPVTRGPD---G--ALILADGR----TLPAD 233 (364)
T ss_pred --------------------cc--CCHHHHHHHHHHHHHCCCE--EEeCCeeEEEcC---C--eEEeCCCC----EEecC
Confidence 00 0135667788888888988 899999998852 2 45554443 78999
Q ss_pred EEEEccCCCCCCc
Q 013303 157 AVVVCNGHFSVPR 169 (446)
Q Consensus 157 ~VVvAtG~~s~p~ 169 (446)
.||+|+| ..|+
T Consensus 234 ~vi~a~G--~~p~ 244 (364)
T TIGR03169 234 AILWATG--ARAP 244 (364)
T ss_pred EEEEccC--CChh
Confidence 9999999 5554
No 317
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.98 E-value=8.5e-06 Score=79.68 Aligned_cols=37 Identities=38% Similarity=0.524 Sum_probs=34.4
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~ 37 (446)
|++||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 6789999999999999999999999999999987654
No 318
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.97 E-value=8.9e-06 Score=82.31 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=37.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~ 42 (446)
+++|+|||||+|||+||..|.+. |.+|+|+|+.+.+||...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 47999999999999999999996 679999999999999765
No 319
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.96 E-value=6.2e-05 Score=77.39 Aligned_cols=99 Identities=21% Similarity=0.204 Sum_probs=70.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||..|+.+|..|+..+.+|+++++.+.+. .
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~----~-------------------------------------- 388 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK----A-------------------------------------- 388 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc----c--------------------------------------
Confidence 3689999999999999999999999999999865320 0
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCC-CceEEEEEcEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKKD-DVVEEETFDAV 158 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~-~~~~~~~~d~V 158 (446)
..++.+.... .|+. +++++.|.++...+ +.- .+++.+.. ++..++.+|.|
T Consensus 389 ------------------------~~~l~~~l~~~~gI~--i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~~~i~~D~v 441 (517)
T PRK15317 389 ------------------------DQVLQDKLRSLPNVT--IITNAQTTEVTGDG-DKVTGLTYKDRTTGEEHHLELEGV 441 (517)
T ss_pred ------------------------cHHHHHHHhcCCCcE--EEECcEEEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEE
Confidence 0123333333 4777 89999999998653 322 25555432 34457999999
Q ss_pred EEccCCCCCCccC
Q 013303 159 VVCNGHFSVPRLA 171 (446)
Q Consensus 159 VvAtG~~s~p~~p 171 (446)
++|+| ..|+..
T Consensus 442 ~~~~G--~~p~~~ 452 (517)
T PRK15317 442 FVQIG--LVPNTE 452 (517)
T ss_pred EEeEC--CccCch
Confidence 99999 666654
No 320
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.95 E-value=1e-05 Score=82.11 Aligned_cols=40 Identities=43% Similarity=0.652 Sum_probs=37.4
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
+|+|||||++||++|..|.+.|++|+|||+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999997654
No 321
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.94 E-value=1.1e-05 Score=78.13 Aligned_cols=42 Identities=36% Similarity=0.550 Sum_probs=39.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
..||+|||||.+||++|.+|.+.|++|+|+|.++++||....
T Consensus 7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 469999999999999999999999999999999999997654
No 322
>PLN02487 zeta-carotene desaturase
Probab=97.93 E-value=1.2e-05 Score=82.66 Aligned_cols=41 Identities=44% Similarity=0.631 Sum_probs=38.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
+++|+|||||++||++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 35999999999999999999999999999999999998765
No 323
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.93 E-value=0.00015 Score=73.14 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||||..|+-+|..|++.|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999864
No 324
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.91 E-value=1.1e-05 Score=85.20 Aligned_cols=43 Identities=42% Similarity=0.544 Sum_probs=39.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
.++|+|||||++||+||+.|.+.|++|+|+|+++.+||.....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~ 280 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTM 280 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccccc
Confidence 4789999999999999999999999999999999999876543
No 325
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.84 E-value=0.00017 Score=70.37 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.0
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~ 35 (446)
++|+|||+|+.|+.+|..|++.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 6899999999999999999999987 99999753
No 326
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.84 E-value=0.0002 Score=72.52 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=30.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3689999999999999999999998 899999853
No 327
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.83 E-value=0.00016 Score=70.42 Aligned_cols=105 Identities=21% Similarity=0.220 Sum_probs=82.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
..|+++|+|..|+.+|..|...+.+|++|++.+.+ ..
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~-----~~-------------------------------------- 250 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL-----LP-------------------------------------- 250 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccc-----hh--------------------------------------
Confidence 47999999999999999999999999999997522 10
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEEc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.. -...+.+.+..|.++.++. ++.++.+.+++-.++++ -.|.+.++. ++.+|.||++
T Consensus 251 --------------~l--f~~~i~~~~~~y~e~kgVk--~~~~t~~s~l~~~~~Gev~~V~l~dg~----~l~adlvv~G 308 (478)
T KOG1336|consen 251 --------------RL--FGPSIGQFYEDYYENKGVK--FYLGTVVSSLEGNSDGEVSEVKLKDGK----TLEADLVVVG 308 (478)
T ss_pred --------------hh--hhHHHHHHHHHHHHhcCeE--EEEecceeecccCCCCcEEEEEeccCC----EeccCeEEEe
Confidence 00 1256778888888888888 89999999998766433 335555554 8999999999
Q ss_pred cCCCCCCccCCCC
Q 013303 162 NGHFSVPRLAQVP 174 (446)
Q Consensus 162 tG~~s~p~~p~i~ 174 (446)
+| .+|+.+.+.
T Consensus 309 iG--~~p~t~~~~ 319 (478)
T KOG1336|consen 309 IG--IKPNTSFLE 319 (478)
T ss_pred ec--ccccccccc
Confidence 99 899988765
No 328
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.83 E-value=2.4e-05 Score=74.72 Aligned_cols=42 Identities=33% Similarity=0.457 Sum_probs=36.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCc--EEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~--v~v~e~~~~~GG~w~~ 43 (446)
.++|+|+|||++||++|.+|++.+-+ |++||+.+++||-.+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 57999999999999999999999765 5679999999985543
No 329
>PLN02612 phytoene desaturase
Probab=97.81 E-value=2.3e-05 Score=81.25 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=38.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
.++|+|||||++||++|.+|.+.|++|+|+|+++.+||...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 46899999999999999999999999999999999998654
No 330
>PRK12831 putative oxidoreductase; Provisional
Probab=97.78 E-value=0.00031 Score=71.10 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=30.8
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999998753
No 331
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.77 E-value=5.3e-05 Score=73.61 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=52.2
Q ss_pred CCCCC---CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCc
Q 013303 96 LRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 96 ~~~~~---~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
.+.|| ...+|.+-|...+++.|+. |+++++|+.|+ + +.|.+.+..+. ..+.+|+||||||..+.|.
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i~--~-~~~~v~~~~~~---~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGWQ--G-GTLRFETPDGQ---STIEADAVVLALGGASWSQ 144 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEe--C-CcEEEEECCCc---eEEecCEEEEcCCCccccc
Confidence 46676 6789999999999999999 99999999993 2 45888774322 2589999999999755443
No 332
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=8.3e-05 Score=73.46 Aligned_cols=149 Identities=17% Similarity=0.111 Sum_probs=75.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc-c-CCccCce-eecCCCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV-H-SSLYKSL-RVNLPRELM 78 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~-~-~~~y~~l-~~~~~~~~~ 78 (446)
.+||+|||||.||+.||.+.++.|.++.++-.+-.-=|.+.-++..+-. .|..+ + --....+ -.......+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~------~KG~lvrEIDALGG~Mg~~~D~~~I 77 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGP------GKGHLVREIDALGGLMGKAADKAGI 77 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCc------ccceeEEeehhccchHHHhhhhcCC
Confidence 3799999999999999999999999999987664433333333222210 00000 0 0000000 000001111
Q ss_pred ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCCCceEEEEEc
Q 013303 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFD 156 (446)
Q Consensus 79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~~~~~~~~~d 156 (446)
.|.-..-... +.-...+.-.....+.++++..++.. |+. .+...|..+.-.++. .+-|.+..+. .+.++
T Consensus 78 Q~r~LN~sKG--PAVra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G~----~~~a~ 148 (621)
T COG0445 78 QFRMLNSSKG--PAVRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADGP----EFHAK 148 (621)
T ss_pred chhhccCCCc--chhcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCCC----eeecC
Confidence 1110000000 00001122233444555555555543 343 456677776654422 3556666664 89999
Q ss_pred EEEEccCCC
Q 013303 157 AVVVCNGHF 165 (446)
Q Consensus 157 ~VVvAtG~~ 165 (446)
.||++||.|
T Consensus 149 aVVlTTGTF 157 (621)
T COG0445 149 AVVLTTGTF 157 (621)
T ss_pred EEEEeeccc
Confidence 999999954
No 333
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.76 E-value=2.6e-05 Score=77.83 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=39.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 479999999999999999999999999999999999999874
No 334
>PLN02976 amine oxidase
Probab=97.74 E-value=3.5e-05 Score=84.64 Aligned_cols=43 Identities=35% Similarity=0.604 Sum_probs=40.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
.++|+|||||++|+++|..|.+.|++|+|||+++.+||.|...
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 4789999999999999999999999999999999999987654
No 335
>PLN03000 amine oxidase
Probab=97.73 E-value=3.6e-05 Score=81.62 Aligned_cols=43 Identities=33% Similarity=0.516 Sum_probs=39.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
.++|+|||||++||++|..|.+.|++|+|+|+++++||.+...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~ 226 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK 226 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence 3789999999999999999999999999999999999977644
No 336
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.71 E-value=3.8e-05 Score=79.49 Aligned_cols=41 Identities=37% Similarity=0.592 Sum_probs=37.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC--CcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--~~GG~w~ 42 (446)
..||+|||+|.|||+||..+++.|.+|+|+|+.+ .+||...
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 4799999999999999999999999999999998 6777544
No 337
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.68 E-value=0.00073 Score=61.53 Aligned_cols=182 Identities=17% Similarity=0.225 Sum_probs=92.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC------CcEEEEeeCCCcCce----------eeeCCCCCC-CCCCCCC----CCC-
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVGGS----------WIYTSETES-DPLGVDP----NRY- 59 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g------~~v~v~e~~~~~GG~----------w~~~~~~~~-~~~g~~p----~~~- 59 (446)
+++|+|||||+.|.++|..|++.+ +.|++||...-.||. |....-+.. .+....- +..
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 479999999999999999999987 789999987765542 322110000 0000000 000
Q ss_pred -CccCCccCceeecCCCCC---cccCC----CCCC-----cCC-CCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEe
Q 013303 60 -PVHSSLYKSLRVNLPREL---MGFQA----YPFV-----ARN-YEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRL 124 (446)
Q Consensus 60 -~~~~~~y~~l~~~~~~~~---~~~~d----~~~~-----~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~ 124 (446)
-...--|+.+.+-+-+.- ..-.. ..|- ... +-+..+.....+...+.+++..-+++- ++. +.+
T Consensus 90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~--lv~ 167 (380)
T KOG2852|consen 90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVK--LVF 167 (380)
T ss_pred cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeE--EEE
Confidence 001112333332111110 00000 0010 000 001222333456677777777766665 466 565
Q ss_pred CeEEEEEEEcCCCceEEEEEeCC---CceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC
Q 013303 125 HTEVLNARLVESNKWKVKSRKKD---DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193 (446)
Q Consensus 125 ~~~V~~v~~~~~~~~~v~~~~~~---~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~ 193 (446)
+ +|..|..+ ..++...... +.......+.+|||.|.|+.-.+|.+ + ..|.-+||-...-++
T Consensus 168 G-kv~ev~dE---k~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~-r---IsglrihsI~l~~~e 231 (380)
T KOG2852|consen 168 G-KVKEVSDE---KHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFT-R---ISGLRIHSITLSPGE 231 (380)
T ss_pred e-eeEEeecc---cccccccchhhhcCceEEeeeeEEEEecCCCchhhcccc-c---cceeeeeeEEecCCC
Confidence 4 77777622 2333333222 22456788999999998765555542 2 224456776655444
No 338
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.68 E-value=4.4e-05 Score=77.73 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=37.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w 41 (446)
+||+|||+||+|+.+|+.|++.|++|++||+....||.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 589999999999999999999999999999999998877
No 339
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.67 E-value=8.3e-05 Score=71.00 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=31.3
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
..|+|||+|++|+=.|..+++.|.+|.++.+.+.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k 37 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK 37 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc
Confidence 4799999999999999999999999999998764
No 340
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.64 E-value=0.00015 Score=69.40 Aligned_cols=101 Identities=22% Similarity=0.358 Sum_probs=73.8
Q ss_pred eEEEECcChHHHHHHHHHHHC--------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCce
Q 013303 4 HVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL 69 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~--------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l 69 (446)
.++||||||.|...|.+|+.. .++|+++|..+.+ .+ ++
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i---L~----------------------mF--- 271 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI---LN----------------------MF--- 271 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH---HH----------------------HH---
Confidence 689999999999999999742 3589999987643 00 00
Q ss_pred eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (446)
Q Consensus 70 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~ 149 (446)
.+.+.+|.++...+-++. ++.++.|..|+. -.+++..++|+
T Consensus 272 --------------------------------dkrl~~yae~~f~~~~I~--~~~~t~Vk~V~~-----~~I~~~~~~g~ 312 (491)
T KOG2495|consen 272 --------------------------------DKRLVEYAENQFVRDGID--LDTGTMVKKVTE-----KTIHAKTKDGE 312 (491)
T ss_pred --------------------------------HHHHHHHHHHHhhhccce--eecccEEEeecC-----cEEEEEcCCCc
Confidence 145666777666666777 888999999864 34666666666
Q ss_pred eEEEEEcEEEEccCCCCCCccC
Q 013303 150 VEEETFDAVVVCNGHFSVPRLA 171 (446)
Q Consensus 150 ~~~~~~d~VVvAtG~~s~p~~p 171 (446)
..++.|--+|-|||.-.+|.+-
T Consensus 313 ~~~iPYG~lVWatG~~~rp~~k 334 (491)
T KOG2495|consen 313 IEEIPYGLLVWATGNGPRPVIK 334 (491)
T ss_pred eeeecceEEEecCCCCCchhhh
Confidence 7889999999999955555443
No 341
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.63 E-value=0.00037 Score=68.35 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEcEEEEccCC
Q 013303 100 PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGH 164 (446)
Q Consensus 100 ~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~ 164 (446)
.++.++...|.+.+++ -++. +.-+..+.++-.+++... -|.+.+..++..++.++.||+|||.
T Consensus 130 ~TG~~I~~~L~~~v~~~p~I~--v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 130 ATGKEIMTALLKKVRNRPNIT--VLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred CccHHHHHHHHHHHhcCCCcE--EEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 5779999999998876 4666 666777777665542122 2334333224567889999999995
No 342
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.62 E-value=0.00017 Score=73.55 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=31.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|.+|+++|..|++.|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999753
No 343
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.62 E-value=0.00039 Score=72.11 Aligned_cols=34 Identities=29% Similarity=0.165 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 3689999999999999999999999999999865
No 344
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.55 E-value=3e-05 Score=69.04 Aligned_cols=86 Identities=23% Similarity=0.266 Sum_probs=57.8
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-------------------ccccc-----cCC----CC-CCeeeccc
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------------------DETHE-----KQP----GY-DNMWLHSM 249 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-------------------~~~~~-----~~~----~~-~~v~~~~~ 249 (446)
+|+|||+|+.|+.+|..|++.+.+|+++.+.+. ..... ++. .. -.+.+...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999976552 00000 111 11 13334566
Q ss_pred eeEEccCCc------EE-----ecCCcEEeecEEEEecCccCCCCC
Q 013303 250 VERANEDGT------VV-----FRNGRVVSADVIMHCTGYKYNYPF 284 (446)
Q Consensus 250 v~~i~~~~~------v~-----~~dG~~~~~D~vi~atG~~~~~~~ 284 (446)
+.++..... +. ..++.++.+|.||+|||..|..|.
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 777754433 11 234566889999999999876443
No 345
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.55 E-value=0.00093 Score=71.94 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~ 35 (446)
++|+|||||..|+-+|..+.+.|.+ |+++++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999987 99999854
No 346
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.51 E-value=0.00018 Score=69.91 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=26.0
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r 228 (446)
.|+|||||..|+|.|..+++.|.+|.++..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~ 30 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITH 30 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEee
Confidence 489999999999999999999999999954
No 347
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.49 E-value=0.00019 Score=63.95 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=48.6
Q ss_pred EEEecCCcHHHHHHHHhccCCE-EEEEEecCCc----------------cccc---cCCC--------------------
Q 013303 201 ILIGHYASGLDIKRDLAGFAKE-VHIASRSVAD----------------ETHE---KQPG-------------------- 240 (446)
Q Consensus 201 vVVG~G~sg~eia~~l~~~~~~-V~l~~r~~~~----------------~~~~---~~~~-------------------- 240 (446)
+|||+|++|+-+|..|.+.|.+ |+++.+.+.. ..+. .+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 9999987530 0000 0000
Q ss_pred ---------------CCCeeeccceeEEccCCc---EEecCCcEEeecEEEEecCc--cCCCCCC
Q 013303 241 ---------------YDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGY--KYNYPFL 285 (446)
Q Consensus 241 ---------------~~~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~--~~~~~~l 285 (446)
..++.....|+++..++. |.+.+|.++.+|.||+|||. .|..|-+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~ 145 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI 145 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence 002334556777765443 88888888999999999997 4555443
No 348
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.48 E-value=0.0014 Score=66.61 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=28.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||||..|+-+|..+++.|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 3689999999999999999999886 788776543
No 349
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00057 Score=68.59 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCE-EEEEEecCC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKE-VHIASRSVA 231 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~-V~l~~r~~~ 231 (446)
..+|+|||+|.||+=+|..|.+.+.. +.++.+...
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~ 43 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD 43 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence 35799999999999999999999888 999988753
No 350
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.45 E-value=0.00011 Score=69.97 Aligned_cols=35 Identities=34% Similarity=0.572 Sum_probs=29.9
Q ss_pred CeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCc
Q 013303 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQV 37 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~ 37 (446)
+|++|||+|++|..+|..|++.+ .+|+|+|+....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 59999999999999999999997 699999997654
No 351
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.45 E-value=0.0038 Score=63.34 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=30.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3789999999999999999999995 799999864
No 352
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.43 E-value=0.0019 Score=70.75 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=30.6
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||||..|+-+|..+.+.|.+|+++.+.+
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 689999999999999999999999999998753
No 353
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.41 E-value=0.0014 Score=72.45 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~ 80 (446)
.++|+|||+|+.|+.+|..|++.|. .|+|+|..+.+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------------
Confidence 3689999999999999999999995 57888875311
Q ss_pred CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
...+.+.+++.++. ++.++.|..+...+ ..-.|++....++..++.+|.|++
T Consensus 354 -------------------------~~~l~~~L~~~GV~--i~~~~~v~~i~g~~-~v~~V~l~~~~g~~~~i~~D~V~v 405 (985)
T TIGR01372 354 -------------------------SPEARAEARELGIE--VLTGHVVAATEGGK-RVSGVAVARNGGAGQRLEADALAV 405 (985)
T ss_pred -------------------------hHHHHHHHHHcCCE--EEcCCeEEEEecCC-cEEEEEEEecCCceEEEECCEEEE
Confidence 11133445667887 88999999987533 222344443223345799999999
Q ss_pred ccCCCCCCccC
Q 013303 161 CNGHFSVPRLA 171 (446)
Q Consensus 161 AtG~~s~p~~p 171 (446)
+.| ..|+..
T Consensus 406 a~G--~~Pnt~ 414 (985)
T TIGR01372 406 SGG--WTPVVH 414 (985)
T ss_pred cCC--cCchhH
Confidence 999 677653
No 354
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00019 Score=66.44 Aligned_cols=35 Identities=37% Similarity=0.633 Sum_probs=33.0
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|..||+|||||.|||+++..|.+.|.+++|+.+..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 78899999999999999999999999999998864
No 355
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.35 E-value=0.0064 Score=64.31 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||||..|+-+|..|++.|. +|+++.+..
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3789999999999999999999986 699998753
No 356
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.31 E-value=0.0026 Score=59.39 Aligned_cols=43 Identities=33% Similarity=0.448 Sum_probs=35.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCC---------cCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQ---------VGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~---------~GG~w~~~ 44 (446)
..+|+|||||-.|.+.|..|.++ |++|+|+|+.+. +||.+...
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF 141 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF 141 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec
Confidence 35899999999999999999764 799999999764 47776543
No 357
>PRK06847 hypothetical protein; Provisional
Probab=97.29 E-value=0.00061 Score=67.10 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999865
No 358
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.28 E-value=0.00027 Score=69.63 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=36.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~ 42 (446)
..||+|||||..|..+|.-.+-+|+++.++|+++...|+-.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 37999999999999999999999999999999886655543
No 359
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.28 E-value=0.00038 Score=64.18 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=63.6
Q ss_pred CEEEEEecCCcHHHHHHHHhcc-C-CEEEEEEecCC---c-------cccc----------cCCCCCCeeeccceeEEcc
Q 013303 198 QVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA---D-------ETHE----------KQPGYDNMWLHSMVERANE 255 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~-~-~~V~l~~r~~~---~-------~~~~----------~~~~~~~v~~~~~v~~i~~ 255 (446)
-.|+|||||.-|+-+|..+.+. + .+|-++..... + .-+. .+...+..+++..|+++++
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P 119 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNP 119 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCC
Confidence 4799999999999999999764 3 35777765542 0 0011 1112234556678888887
Q ss_pred CCc-EEecCCcEEeecEEEEecCccCCCCCC
Q 013303 256 DGT-VVFRNGRVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 256 ~~~-v~~~dG~~~~~D~vi~atG~~~~~~~l 285 (446)
+.. |.+.+|++|.+|.+|+|+|..-++.-+
T Consensus 120 ~~N~v~t~gg~eIsYdylviA~Giql~y~~I 150 (446)
T KOG3851|consen 120 DKNTVVTRGGEEISYDYLVIAMGIQLDYGKI 150 (446)
T ss_pred CcCeEEccCCcEEeeeeEeeeeeceeccchh
Confidence 644 999999999999999999999887654
No 360
>PRK06753 hypothetical protein; Provisional
Probab=97.26 E-value=0.00079 Score=66.23 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=30.8
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
+|+|||||++|+-+|..|++.|.+|+++.+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 699999999999999999999999999998763
No 361
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.25 E-value=0.0041 Score=65.88 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=29.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
++|+|||||..|+-+|..+.+.|. +|+++.+.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 689999999999999999999996 699988754
No 362
>PLN02463 lycopene beta cyclase
Probab=97.23 E-value=0.00077 Score=67.61 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=30.4
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
-.|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 479999999999999999999999999998765
No 363
>PRK07236 hypothetical protein; Provisional
Probab=97.22 E-value=0.0011 Score=65.62 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4789999999999999999999999999999875
No 364
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.22 E-value=0.00068 Score=62.67 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=32.7
Q ss_pred CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
+..-.|+|||+|++|+=.|..|++.+.+|.++.+...
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3455799999999999999999999999999998753
No 365
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.21 E-value=0.00086 Score=67.74 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303 99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (446)
Q Consensus 99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s 166 (446)
.+...-+...|...|++.|.. |..++.|++|.-..++.|-|.+..+ .+++.++|-|+|.|+
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~--viE~cpV~~i~~~~~~~~gVeT~~G-----~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGAL--VIENCPVTGLHVETDKFGGVETPHG-----SIETECVVNAAGVWA 243 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcE--EEecCCcceEEeecCCccceeccCc-----ceecceEEechhHHH
Confidence 344567778888899999988 9999999999877657787887776 599999999999765
No 366
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.19 E-value=0.0022 Score=63.91 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=32.8
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
.++|+|||+|+||+-.|..|.+.|.+|+++.|++.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 57899999999999999999999999999999874
No 367
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.15 E-value=0.00049 Score=74.51 Aligned_cols=37 Identities=24% Similarity=0.177 Sum_probs=33.7
Q ss_pred CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
..+|+|+|||+|++|+..|..|++.|.+|+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 4689999999999999999999999999999987653
No 368
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.14 E-value=0.00064 Score=58.99 Aligned_cols=41 Identities=29% Similarity=0.586 Sum_probs=34.7
Q ss_pred CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcC-ceeee
Q 013303 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVG-GSWIY 43 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~G-G~w~~ 43 (446)
.||+|||||.+||+||+.+..+ .++|.++|.+-.+| |.|.-
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLG 120 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLG 120 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccccc
Confidence 5899999999999999999854 68999999987765 46753
No 369
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.13 E-value=0.00031 Score=69.44 Aligned_cols=33 Identities=30% Similarity=0.249 Sum_probs=26.0
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
+|+|||+|++|+=.|..+++.|.+|.++.+.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~ 34 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR 34 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 589999999999999999999999999999864
No 370
>PRK05868 hypothetical protein; Validated
Probab=97.08 E-value=0.0018 Score=63.69 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=31.3
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
++|+|||+|+.|+-+|..|++.|.+|+++.+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999999999999998763
No 371
>PRK02106 choline dehydrogenase; Validated
Probab=97.07 E-value=0.00058 Score=71.00 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCC
Q 013303 107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177 (446)
Q Consensus 107 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~ 177 (446)
.||....++-++. |..++.|.+|..+. +. --|++.+..+....+.++.||+|.|....|.+....|+.
T Consensus 205 ~~l~~a~~~~nl~--i~~~a~V~rI~~~~-~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG 273 (560)
T PRK02106 205 AYLDPALKRPNLT--IVTHALTDRILFEG-KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIG 273 (560)
T ss_pred HhhccccCCCCcE--EEcCCEEEEEEEeC-CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence 4454443344566 88899999997653 22 224444433334457899999999998888887665653
No 372
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.07 E-value=0.00052 Score=69.28 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=32.8
Q ss_pred CCCEEEEEecCCcHHHHHHHHhc--cCCEEEEEEecCC
Q 013303 196 QDQVVILIGHYASGLDIKRDLAG--FAKEVHIASRSVA 231 (446)
Q Consensus 196 ~~k~VvVVG~G~sg~eia~~l~~--~~~~V~l~~r~~~ 231 (446)
.+++|+|||+|++|+..|..|++ .+.+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 56899999999999999999986 6899999999875
No 373
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.06 E-value=0.0018 Score=61.95 Aligned_cols=58 Identities=28% Similarity=0.273 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccC
Q 013303 105 VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171 (446)
Q Consensus 105 v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p 171 (446)
+.++-.+-+++-|+. ++-|..|.++.+.. +...+.+.++. ++..|.||+|+| ..|+.-
T Consensus 395 ls~wt~ekir~~GV~--V~pna~v~sv~~~~-~nl~lkL~dG~----~l~tD~vVvavG--~ePN~e 452 (659)
T KOG1346|consen 395 LSQWTIEKIRKGGVD--VRPNAKVESVRKCC-KNLVLKLSDGS----ELRTDLVVVAVG--EEPNSE 452 (659)
T ss_pred HHHHHHHHHHhcCce--eccchhhhhhhhhc-cceEEEecCCC----eeeeeeEEEEec--CCCchh
Confidence 344555566777887 89999999998876 66778888876 899999999999 777753
No 374
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.05 E-value=0.00078 Score=62.56 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=34.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC--CcCce
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGS 40 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--~~GG~ 40 (446)
..||+|||||.|||.||.+|+..|.+|+|+|++. .+||+
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 3689999999999999999999999999999764 46765
No 375
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.04 E-value=0.0027 Score=58.61 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=33.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVG 38 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~G 38 (446)
.+|++|||||+.|++.|++|.-+ +++|.|+|+...++
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 47999999999999999999876 89999999987765
No 376
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00088 Score=61.28 Aligned_cols=44 Identities=27% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCC-------CcEEEEeeCCC-------cCceeeeC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQ-------VGGSWIYT 44 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g-------~~v~v~e~~~~-------~GG~w~~~ 44 (446)
++.+|+|||+|..||++|..+++.. .+|++++.... ..|.|...
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~ 59 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPD 59 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecc
Confidence 3679999999999999999888843 47888875432 34667654
No 377
>PRK07588 hypothetical protein; Provisional
Probab=97.03 E-value=0.0017 Score=64.34 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=30.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999987653
No 378
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.03 E-value=0.011 Score=56.73 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=53.1
Q ss_pred EEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCCCccCC-CCCCC-----CCCccEEEeeecCCCCC
Q 013303 122 VRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPRLAQ-VPGID-----SWPGKQMHSHNYRIPNP 194 (446)
Q Consensus 122 i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~-----~~~g~~~hs~~~~~~~~ 194 (446)
+.-+++|.+++...+|...+++... .++..+++.|.||+||| -....|. +.|+. .-.|...-..+|+...+
T Consensus 295 l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATG--Y~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~ 372 (436)
T COG3486 295 LLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATG--YRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWD 372 (436)
T ss_pred eccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecc--cccCCchhhhhHHHhhcccccCCeEecCceeeecC
Confidence 6668899999988766688888775 45778899999999999 4455553 34443 12344444555554332
Q ss_pred CCC-CEEEEEec
Q 013303 195 FQD-QVVILIGH 205 (446)
Q Consensus 195 ~~~-k~VvVVG~ 205 (446)
-.+ .+|-|.|+
T Consensus 373 ~~~~~~ifvqn~ 384 (436)
T COG3486 373 GPGKGRIFVQNA 384 (436)
T ss_pred CCCcceEEEecc
Confidence 122 35666554
No 379
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.02 E-value=0.0012 Score=67.69 Aligned_cols=34 Identities=29% Similarity=0.275 Sum_probs=28.3
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
|+|+|||+|+||+-.|..|.+.|-+|+++.+++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 7999999999999999999999999999998764
No 380
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.01 E-value=0.0023 Score=64.65 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4789999999999999999999999999998854
No 381
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.98 E-value=0.0023 Score=62.88 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=58.7
Q ss_pred EEEEEecCCcHHHHHHHHhcc--CCEEEEEEecCC----------c---c-----ccccC------------C-------
Q 013303 199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA----------D---E-----THEKQ------------P------- 239 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~--~~~V~l~~r~~~----------~---~-----~~~~~------------~------- 239 (446)
.|+|||+|.+|+.+|..|++. +.+|.++.+.+. . . .+..+ .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 389999999999999999987 899999988762 0 0 00000 0
Q ss_pred ----------------C--CCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccC
Q 013303 240 ----------------G--YDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKY 280 (446)
Q Consensus 240 ----------------~--~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~ 280 (446)
+ ...+.....|.++..++ |+++||+++.+|.||.|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~-v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG-VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE-EEECCCCEEEeeEEEECCCCCC
Confidence 0 01244456677775544 8889999999999999999775
No 382
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.97 E-value=0.028 Score=57.29 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=29.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||||..|+-+|..+.+.|. +|+++|..+
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 3689999999999999999888875 799998764
No 383
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0097 Score=56.46 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.++|+|||||-+.+-.|..|.+.+-+|+++=|.+.+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~-------------------------------------------- 178 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF-------------------------------------------- 178 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc--------------------------------------------
Confidence 469999999999999999999999999999886532
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv 160 (446)
-..+.+ .+-+++. ++. +.+++.|..+.-++ .-.|...+..++...+.+|.|++
T Consensus 179 ------------------ra~~~~----~~~l~~~~~i~--~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~ 232 (305)
T COG0492 179 ------------------RAEEIL----VERLKKNVKIE--VLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFI 232 (305)
T ss_pred ------------------CcCHHH----HHHHHhcCCeE--EEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEE
Confidence 001222 3333332 555 88999999987432 23456665445566899999999
Q ss_pred ccCCCCCCcc
Q 013303 161 CNGHFSVPRL 170 (446)
Q Consensus 161 AtG~~s~p~~ 170 (446)
+.| ..|+.
T Consensus 233 ~iG--~~p~~ 240 (305)
T COG0492 233 AIG--HLPNT 240 (305)
T ss_pred ecC--CCCch
Confidence 999 55554
No 384
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.0025 Score=55.94 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=36.6
Q ss_pred cCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 189 YRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 189 ~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
+.+..+|..-.|+|||+|+||+-.|..|++.+-+|.++.|+-.
T Consensus 22 ~~~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls 64 (262)
T COG1635 22 FEDLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS 64 (262)
T ss_pred HHHHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence 4444456667899999999999999999999999999998753
No 385
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.90 E-value=0.003 Score=62.63 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=32.1
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
..+|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999999999998753
No 386
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.90 E-value=0.0034 Score=58.23 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=32.5
Q ss_pred CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
++..-.|+|||+|++|+-.|..|++.|.+|.++.+..
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 3344679999999999999999999999999999865
No 387
>PRK13984 putative oxidoreductase; Provisional
Probab=96.89 E-value=0.026 Score=59.39 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC------cEEEEe
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH------TVVVYE 32 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~------~v~v~e 32 (446)
.++|+|||||..|+-+|..|++.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 3689999999999999999998753 566653
No 388
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0049 Score=60.06 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
.+||+|||||-||..||.+.++.|.+.+++-.+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 469999999999999999999999999888765
No 389
>PLN02661 Putative thiazole synthesis
Probab=96.87 E-value=0.0037 Score=59.90 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=36.9
Q ss_pred EeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhcc-CCEEEEEEecC
Q 013303 185 HSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGF-AKEVHIASRSV 230 (446)
Q Consensus 185 hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~-~~~V~l~~r~~ 230 (446)
....+.+-.++..-.|+|||+|.+|+-.|..|++. +.+|+++.+..
T Consensus 80 ~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 80 TRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 33445555556677899999999999999999975 78999999865
No 390
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.86 E-value=0.0043 Score=58.11 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
+++++|||||..++..|--++-.|-++-+|=|.+.+ .+
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv---LR--------------------------------------- 226 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV---LR--------------------------------------- 226 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh---hc---------------------------------------
Confidence 689999999999999999999999999998886643 00
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA 161 (446)
.| .+.+.+.+.+..+..|++ ++-++.++.+.+..++...+.+..+. ...+|.|+.|
T Consensus 227 ----------------~F--D~~i~~~v~~~~~~~gin--vh~~s~~~~v~K~~~g~~~~i~~~~~----i~~vd~llwA 282 (478)
T KOG0405|consen 227 ----------------GF--DEMISDLVTEHLEGRGIN--VHKNSSVTKVIKTDDGLELVITSHGT----IEDVDTLLWA 282 (478)
T ss_pred ----------------ch--hHHHHHHHHHHhhhccee--ecccccceeeeecCCCceEEEEeccc----cccccEEEEE
Confidence 00 145667777777777887 88899999998877565666665553 4559999999
Q ss_pred cCCCCCCccCC
Q 013303 162 NGHFSVPRLAQ 172 (446)
Q Consensus 162 tG~~s~p~~p~ 172 (446)
+| -.|+...
T Consensus 283 iG--R~Pntk~ 291 (478)
T KOG0405|consen 283 IG--RKPNTKG 291 (478)
T ss_pred ec--CCCCccc
Confidence 99 6766554
No 391
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.86 E-value=0.003 Score=62.20 Aligned_cols=82 Identities=26% Similarity=0.374 Sum_probs=59.0
Q ss_pred EEEEecCCcHHHHHHHH--hccCCEEEEEEecCCc----c--------c---c---------------------------
Q 013303 200 VILIGHYASGLDIKRDL--AGFAKEVHIASRSVAD----E--------T---H--------------------------- 235 (446)
Q Consensus 200 VvVVG~G~sg~eia~~l--~~~~~~V~l~~r~~~~----~--------~---~--------------------------- 235 (446)
|+|||+|++|.-+|..| ++.+.+|.++.+.+.. + . +
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 89999999999999999 7789999999765420 0 0 0
Q ss_pred -------------ccCCCCCCeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCC
Q 013303 236 -------------EKQPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYN 281 (446)
Q Consensus 236 -------------~~~~~~~~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~ 281 (446)
+++...+.+.+...|.++..++. |+++||+++.++.||-|+|....
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 00111123444566777765543 67899999999999999997644
No 392
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.85 E-value=0.016 Score=63.43 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=29.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~-~v~v~e~~~ 35 (446)
.++|+|||||..|+-+|..+.+. |. +|+++.+..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 47899999999999999999886 75 799998854
No 393
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.83 E-value=0.017 Score=61.03 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~ 35 (446)
.++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3789999999999999999999985 799998753
No 394
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.82 E-value=0.015 Score=64.45 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=28.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~ 34 (446)
.++|+|||||..|+-+|..+.+.|.+ |+++.+.
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 37899999999999999999999975 7777654
No 395
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.81 E-value=0.0033 Score=62.79 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=30.0
Q ss_pred EEEEEecCCcHHHHHHHHhccC-CEEEEEEecCC
Q 013303 199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA 231 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~ 231 (446)
+|+|||+|..|+-+|..|++.| .+|+++.+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 7999999999999999999988 49999998754
No 396
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.80 E-value=0.00095 Score=68.08 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=52.6
Q ss_pred CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---cccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecE
Q 013303 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADV 271 (446)
Q Consensus 195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~ 271 (446)
+.+++|+|||+|.+|+++|..|++.|.+|+++.+++.. .....+.+.+ + .-..+.. +. ....+|.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g-v------~~~~~~~-~~----~~~~~D~ 81 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG-A------TVRLGPG-PT----LPEDTDL 81 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC-C------EEEECCC-cc----ccCCCCE
Confidence 46789999999999999999999999999999866531 0001111111 1 1111110 10 1245899
Q ss_pred EEEecCccCCCCCC
Q 013303 272 IMHCTGYKYNYPFL 285 (446)
Q Consensus 272 vi~atG~~~~~~~l 285 (446)
||.++|..|+.|++
T Consensus 82 Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 82 VVTSPGWRPDAPLL 95 (480)
T ss_pred EEECCCcCCCCHHH
Confidence 99999999999874
No 397
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.78 E-value=0.0016 Score=64.07 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=31.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+||+|||||++|+++|..|.+.|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
No 398
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.77 E-value=0.0011 Score=68.53 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCC
Q 013303 105 VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI 176 (446)
Q Consensus 105 v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~ 176 (446)
...|+....++-|++ |..++.|.+|..++ ++ .-|.+....+......++.||+|.|....|.+....|+
T Consensus 196 ~~~~l~~a~~r~nl~--i~~~~~V~rI~~~~-~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI 265 (532)
T TIGR01810 196 ARAYLHPAMKRPNLE--VQTRAFVTKINFEG-NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI 265 (532)
T ss_pred HHHHhhhhccCCCeE--EEeCCEEEEEEecC-CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence 445666644455676 89999999998754 32 23444443222334689999999999888888766565
No 399
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.74 E-value=0.0015 Score=58.68 Aligned_cols=83 Identities=22% Similarity=0.251 Sum_probs=54.4
Q ss_pred EEEEecCCcHHHHHHHHhcc--CCEEEEEEecCCc----------cccccCC-CCCCe--------eeccceeEEcc-CC
Q 013303 200 VILIGHYASGLDIKRDLAGF--AKEVHIASRSVAD----------ETHEKQP-GYDNM--------WLHSMVERANE-DG 257 (446)
Q Consensus 200 VvVVG~G~sg~eia~~l~~~--~~~V~l~~r~~~~----------~~~~~~~-~~~~v--------~~~~~v~~i~~-~~ 257 (446)
.+|||||..|+-+|.+|+.. ..+|.+++-++-- ..+.+.. +..+. .+...|..+.. +.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~s~eh 81 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWDSSEH 81 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhccccc
Confidence 58999999999999999976 4578888776641 1111110 00000 01112333332 23
Q ss_pred cEEecCCcEEeecEEEEecCccCCC
Q 013303 258 TVVFRNGRVVSADVIMHCTGYKYNY 282 (446)
Q Consensus 258 ~v~~~dG~~~~~D~vi~atG~~~~~ 282 (446)
-+++++|..+.++.+++||||+|.+
T Consensus 82 ci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 82 CIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred eEEecCCceeeEEEEEEecCCCcce
Confidence 3999999999999999999999975
No 400
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.73 E-value=0.0039 Score=61.84 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=30.6
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 469999999999999999999999999999864
No 401
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.72 E-value=0.034 Score=57.98 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~ 34 (446)
.++|+|||+|..|+-++..+.+.| .+|+|+.+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 468999999999999999999888 568888775
No 402
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.70 E-value=0.0015 Score=63.25 Aligned_cols=43 Identities=33% Similarity=0.487 Sum_probs=38.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~ 44 (446)
.+|++|||+|..||++|..|++.|.+|+++|++...||--.+.
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavte 56 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTE 56 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeee
Confidence 4799999999999999999999999999999998888765543
No 403
>PRK06834 hypothetical protein; Provisional
Probab=96.64 E-value=0.0053 Score=62.60 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 579999999999999999999999999999865
No 404
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.62 E-value=0.0048 Score=61.05 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=29.5
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 38999999999999999999999999999765
No 405
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.61 E-value=0.0017 Score=57.91 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=50.9
Q ss_pred CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEEE
Q 013303 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMH 274 (446)
Q Consensus 195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~ 274 (446)
+.|++|+|||||.+|.--+..|.+.|.+|+++.....+ .+..+.+.++ |+-+..+ +..+..-.+|.||.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~-~l~~l~~~~~------i~~~~~~----~~~~dl~~~~lVi~ 75 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES-ELTLLAEQGG------ITWLARC----FDADILEGAFLVIA 75 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH-HHHHHHHcCC------EEEEeCC----CCHHHhCCcEEEEE
Confidence 57899999999999999999999999999999765431 1222221112 2222111 01111124899999
Q ss_pred ecCcc-CCCCC
Q 013303 275 CTGYK-YNYPF 284 (446)
Q Consensus 275 atG~~-~~~~~ 284 (446)
|||-. .|.+.
T Consensus 76 at~d~~ln~~i 86 (205)
T TIGR01470 76 ATDDEELNRRV 86 (205)
T ss_pred CCCCHHHHHHH
Confidence 99986 55443
No 406
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.60 E-value=0.0044 Score=63.80 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=30.1
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
-.|+|||||+.|++.|..+++.|.+|.++.+.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 36999999999999999999999999999887
No 407
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.60 E-value=0.0035 Score=63.35 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=31.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
.++|+|||+|.+|+++|+.|++.|.+|+++|+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999999999999999999999985
No 408
>PRK09126 hypothetical protein; Provisional
Probab=96.59 E-value=0.0049 Score=61.05 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.5
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
-+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999864
No 409
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.58 E-value=0.012 Score=56.65 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=29.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~ 34 (446)
.+||+|+||||.|++.|..|... .++|.++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 47999999999999999999864 3689999987
No 410
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.54 E-value=0.0063 Score=60.20 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=30.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
..|+|||+|++|+=+|..|++.|.+|+++.+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 57999999999999999999999999999998
No 411
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.52 E-value=0.0022 Score=66.07 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=32.0
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.+|++|||+|.+|..+|..|++.|.+|+|+|+..
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 5799999999999999999998899999999984
No 412
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.47 E-value=0.0025 Score=63.74 Aligned_cols=36 Identities=22% Similarity=0.076 Sum_probs=32.0
Q ss_pred CCCEEEEEecCCcHHHHHHHHh-ccCCEEEEEEecCC
Q 013303 196 QDQVVILIGHYASGLDIKRDLA-GFAKEVHIASRSVA 231 (446)
Q Consensus 196 ~~k~VvVVG~G~sg~eia~~l~-~~~~~V~l~~r~~~ 231 (446)
.+++|+|||+|++|+..|..|+ +.+.+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5689999999999999999765 56899999999876
No 413
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.45 E-value=0.0074 Score=60.01 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=29.2
Q ss_pred EEEEEecCCcHHHHHHHHhccC--CEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFA--KEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~ 230 (446)
.|+|||+|++|+-+|..|++.| .+|+++.+.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 5999999999999999999985 8999999864
No 414
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.45 E-value=0.0077 Score=59.38 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=30.0
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 38999999999999999999999999999875
No 415
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.38 E-value=0.0042 Score=66.87 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=33.3
Q ss_pred CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
...+|+|+|||+|+.|+.+|..|++.|.+|+++.+.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 347899999999999999999999999999999875
No 416
>PLN02697 lycopene epsilon cyclase
Probab=96.37 E-value=0.0064 Score=62.21 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=29.4
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
-.|+|||+|++|+-+|..|++.|.+|.++.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 47999999999999999999999999999764
No 417
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.36 E-value=0.0099 Score=58.79 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=30.7
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 369999999999999999999999999999864
No 418
>PRK07045 putative monooxygenase; Reviewed
Probab=96.35 E-value=0.011 Score=58.43 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=31.1
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4799999999999999999999999999997663
No 419
>PRK06184 hypothetical protein; Provisional
Probab=96.33 E-value=0.0098 Score=61.05 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=31.0
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
-.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999999865
No 420
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.32 E-value=0.0091 Score=59.45 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=30.0
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999764
No 421
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.30 E-value=0.034 Score=55.30 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCC
Q 013303 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH 164 (446)
Q Consensus 103 ~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~ 164 (446)
.++.+.+.+..++.|+. +..+++|.+++..+ +...+... ..+....+.+|.||+|||.
T Consensus 259 ~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~-~~V~~v~~-~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 259 LRLQNALRRAFERLGGR--IMPGDEVLGAEFEG-GRVTAVWT-RNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CEEEEEEe-eCCceEEEECCEEEEeCCC
Confidence 36777788888888887 99999999998765 43333222 2233457899999999994
No 422
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.27 E-value=0.011 Score=58.32 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=29.6
Q ss_pred EEEEEecCCcHHHHHHHHhccC-CEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~ 230 (446)
.|+|||+|++|+-+|..|++.| .+|+++.+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 3899999999999999999999 9999998864
No 423
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.27 E-value=0.011 Score=58.79 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=30.0
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.+|+|||+|++|+-+|..|++.|.+|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999985
No 424
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.26 E-value=0.011 Score=58.33 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=29.9
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
+|+|||+|+.|.-+|..|++.|.+|+++.+.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 69999999999999999999999999999754
No 425
>PLN02785 Protein HOTHEAD
Probab=96.25 E-value=0.0047 Score=64.24 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=31.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
.+|++|||||.||+.+|..|++ +.+|+|+|++..
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 4799999999999999999998 689999999863
No 426
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.25 E-value=0.0094 Score=56.25 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=30.0
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.|+|||+|++|+-+|..|++.|.+|+++.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999875
No 427
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.012 Score=55.09 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=78.2
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~ 83 (446)
+-+|||||..+|.+|-.|+-.|++|+|.-|+--+
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L---------------------------------------------- 233 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL---------------------------------------------- 233 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeec----------------------------------------------
Confidence 5689999999999999999999999998884211
Q ss_pred CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEcc
Q 013303 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCN 162 (446)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAt 162 (446)
+.| .+++.+.+.+..+..|+. +.-.+...+|++.+++...|...+.. ++.-+..||.|+.|.
T Consensus 234 -------------rGF--Dqdmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~Ai 296 (503)
T KOG4716|consen 234 -------------RGF--DQDMAELVAEHMEERGIK--FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAI 296 (503)
T ss_pred -------------ccc--cHHHHHHHHHHHHHhCCc--eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhh
Confidence 000 168888999999999987 66566778888777677777766543 244567899999999
Q ss_pred CCCCCCccC
Q 013303 163 GHFSVPRLA 171 (446)
Q Consensus 163 G~~s~p~~p 171 (446)
| ..+..-
T Consensus 297 G--R~~~~~ 303 (503)
T KOG4716|consen 297 G--RKALTD 303 (503)
T ss_pred c--cccchh
Confidence 9 455443
No 428
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.23 E-value=0.0056 Score=52.21 Aligned_cols=32 Identities=38% Similarity=0.627 Sum_probs=30.4
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+|+|||||..|.++|..|++.|++|+++.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999875
No 429
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.21 E-value=0.015 Score=49.56 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=25.0
Q ss_pred EEEecCCcHHHHHHHHhccC-----CEEEEEEecC
Q 013303 201 ILIGHYASGLDIKRDLAGFA-----KEVHIASRSV 230 (446)
Q Consensus 201 vVVG~G~sg~eia~~l~~~~-----~~V~l~~r~~ 230 (446)
+|||+|++|+-++..|.+.. .+|+++.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 58999999999999998773 4688888754
No 430
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.19 E-value=0.015 Score=57.46 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.4
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
.|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 699999999999999999999999999997643
No 431
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.16 E-value=0.015 Score=58.13 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=30.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 579999999999999999999999999999865
No 432
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.04 E-value=0.0097 Score=59.32 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=30.0
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
-.|+|||+|..|+|.|...++.|.++.+++...
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 369999999999999999999999999888654
No 433
>PRK07190 hypothetical protein; Provisional
Probab=96.00 E-value=0.015 Score=59.26 Aligned_cols=34 Identities=21% Similarity=0.065 Sum_probs=31.0
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
..|+|||+|++|+=+|..|++.|.+|.++.+.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 4699999999999999999999999999998753
No 434
>PRK09897 hypothetical protein; Provisional
Probab=95.99 E-value=0.017 Score=59.26 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=28.4
Q ss_pred CEEEEEecCCcHHHHHHHHhccCC--EEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~--~V~l~~r~~ 230 (446)
++|+|||+|++|+-+|..|++.+. +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 589999999999999999987654 799998854
No 435
>PRK08013 oxidoreductase; Provisional
Probab=95.98 E-value=0.021 Score=56.77 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.6
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..|+|||+|++|.-+|..|++.|.+|+++.+.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 469999999999999999999999999999764
No 436
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.98 E-value=0.023 Score=56.31 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=30.5
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
-.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 479999999999999999999999999998764
No 437
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.98 E-value=0.0073 Score=53.74 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=32.5
Q ss_pred CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
..+++|+|||+|..|.-.+..|.+.|.+|+++.+..
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 578999999999999999999999999999997643
No 438
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.91 E-value=0.022 Score=56.43 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=29.7
Q ss_pred CEEEEEecCCcHHHHHHHHhcc---CCEEEEEEec
Q 013303 198 QVVILIGHYASGLDIKRDLAGF---AKEVHIASRS 229 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~---~~~V~l~~r~ 229 (446)
-+|+|||+|++|.-+|..|++. |.+|+++.+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3699999999999999999998 9999999984
No 439
>PRK08244 hypothetical protein; Provisional
Probab=95.89 E-value=0.017 Score=59.10 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=31.2
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
..|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3699999999999999999999999999998753
No 440
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.011 Score=53.53 Aligned_cols=33 Identities=42% Similarity=0.716 Sum_probs=31.3
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++++|||+|..|...|+.|.+.|++|+++|+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 589999999999999999999999999999975
No 441
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.84 E-value=0.0096 Score=52.19 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=27.5
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
++|+|||.|..||.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5899999999999999999999999999998753
No 442
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.0097 Score=55.42 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=32.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
...|-|||||.||..||.+++++|+.|.++|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 46799999999999999999999999999998753
No 443
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.79 E-value=0.022 Score=58.86 Aligned_cols=101 Identities=22% Similarity=0.208 Sum_probs=69.9
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d 82 (446)
++-+|||||.-||.+|..|.+.|.++++++-.+.+ |-
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l---------------------------Me---------------- 182 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL---------------------------ME---------------- 182 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH---------------------------HH----------------
Confidence 45689999999999999999999999999875422 00
Q ss_pred CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (446)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt 162 (446)
...+ ..-.+.|+...++.|+. ++++..++.+-... ..-.+...++. .+.+|.||.|+
T Consensus 183 -------------rQLD---~~ag~lL~~~le~~Gi~--~~l~~~t~ei~g~~-~~~~vr~~DG~----~i~ad~VV~a~ 239 (793)
T COG1251 183 -------------RQLD---RTAGRLLRRKLEDLGIK--VLLEKNTEEIVGED-KVEGVRFADGT----EIPADLVVMAV 239 (793)
T ss_pred -------------Hhhh---hHHHHHHHHHHHhhcce--eecccchhhhhcCc-ceeeEeecCCC----cccceeEEEec
Confidence 0011 11234566777777887 66666666654422 23345666665 78999999999
Q ss_pred CCCCCCccC
Q 013303 163 GHFSVPRLA 171 (446)
Q Consensus 163 G~~s~p~~p 171 (446)
| -+|+.-
T Consensus 240 G--IrPn~e 246 (793)
T COG1251 240 G--IRPNDE 246 (793)
T ss_pred c--cccccH
Confidence 9 777753
No 444
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.78 E-value=0.0086 Score=47.01 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=30.5
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
.++|+|||||..|..-++.|.+.|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 578999999999999999999999999999986
No 445
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.78 E-value=0.012 Score=46.14 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.++++|+|||+|..|..=+..|.+.|.+|+++....
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 578999999999999999999999999999998763
No 446
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.77 E-value=0.018 Score=57.80 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=30.6
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
-.|+|||+|++|.-+|..|++.|.+|.++.+..
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 369999999999999999999999999999864
No 447
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.68 E-value=0.029 Score=55.77 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.5
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
++|+|||||.+|+-+|..|++.|.+|+++.+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998753
No 448
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.68 E-value=0.026 Score=55.56 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=29.3
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
+|+|||+|++|+-+|..|++.|.+|+++.+.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 5999999999999999999999999999975
No 449
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.66 E-value=0.016 Score=50.59 Aligned_cols=32 Identities=38% Similarity=0.610 Sum_probs=28.3
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+|+|||||..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999864
No 450
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.64 E-value=0.02 Score=51.07 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||||..|...++.|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4789999999999999999999999999998753
No 451
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.014 Score=59.08 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.8
Q ss_pred eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
+|+|||+|++|+++|+.|++.|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998754
No 452
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.55 E-value=0.015 Score=62.34 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=35.4
Q ss_pred CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
.-.|++|.|||+|++|+-.|.+|.+.|..|++..|+++
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 34689999999999999999999999999999999886
No 453
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.49 E-value=0.011 Score=58.86 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 12 AAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 12 ~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
.|||+||..|++.|++|+|||+++++||....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t 32 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRT 32 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-E
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEE
Confidence 58999999999999999999999999997654
No 454
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.49 E-value=0.04 Score=53.23 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=30.3
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||||.+|+-.|..|.+.|-+|.+...+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 579999999999999999999999999998754
No 455
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.48 E-value=0.014 Score=58.44 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
.+.+++|.|||+|+-|+..|..|++.|..|++..+.+.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 45679999999999999999999999999999888765
No 456
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.45 E-value=0.025 Score=48.12 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=29.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~ 33 (446)
.++|+|||||..|..-++.|.+.|.+|+|+.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 47899999999999999999999999999964
No 457
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.037 Score=54.24 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.6
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
-.|+|||||..|+|.|...++.|.+.++++.+-
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 369999999999999999999999988887653
No 458
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.37 E-value=0.04 Score=54.33 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303 98 RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (446)
Q Consensus 98 ~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p 168 (446)
.......+...|.+.+.+ |+. +.+++.|.+|+..+ +.|.|++.++. .+.+|.||+|+|.++..
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLT--LHFNTEITSLERDG-EGWQLLDANGE----VIAASVVVLANGAQAGQ 192 (381)
T ss_pred cccChHHHHHHHHhccCC-CcE--EEeCCEEEEEEEcC-CeEEEEeCCCC----EEEcCEEEEcCCccccc
Confidence 344567788888888877 877 89999999998765 67888776553 58999999999987644
No 459
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.35 E-value=0.036 Score=57.16 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=28.9
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~ 229 (446)
.|+|||+|.+|+++|..+++.|.+|.++.+.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 4899999999999999999999999999875
No 460
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.42 Score=45.22 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~ 81 (446)
.|||+|||||-+|+.||.-|+----.|+++|=.+.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------------------------------------- 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------------------------------------- 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh--------------------------------------------
Confidence 589999999999999999997654578998854322
Q ss_pred CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (446)
Q Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV 159 (446)
...+-|++-+... ++. |..|..-+.|.-+.+.---+.+.+. .++...+.-+-|+
T Consensus 390 ----------------------kAD~VLq~kl~sl~Nv~--ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvF 445 (520)
T COG3634 390 ----------------------KADAVLQDKLRSLPNVT--IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVF 445 (520)
T ss_pred ----------------------hhHHHHHHHHhcCCCcE--EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeE
Confidence 0012233323222 444 6777777776644311122344432 3456677888899
Q ss_pred EccCCCCCCccCCCCCC
Q 013303 160 VCNGHFSVPRLAQVPGI 176 (446)
Q Consensus 160 vAtG~~s~p~~p~i~G~ 176 (446)
|-.| -.|+.-.+.|.
T Consensus 446 VqIG--L~PNT~WLkg~ 460 (520)
T COG3634 446 VQIG--LLPNTEWLKGA 460 (520)
T ss_pred EEEe--cccChhHhhch
Confidence 9999 67776656654
No 461
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.32 E-value=0.027 Score=55.32 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=33.2
Q ss_pred CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
.++++|||||.+|+..|.+|++.|-+|+++.+.+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 57999999999999999999999999999999875
No 462
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.23 E-value=0.02 Score=41.09 Aligned_cols=30 Identities=27% Similarity=0.229 Sum_probs=27.2
Q ss_pred EEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 202 LIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 202 VVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
|||+|.+|+-.|..|++.+.+|+++.+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998764
No 463
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.16 E-value=0.034 Score=49.50 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.7
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
.++|+|||||-.|...|+.|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 579999999999999999999999999999863
No 464
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.15 E-value=0.058 Score=56.57 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=32.0
Q ss_pred CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
+..+|+|||||..|+-+|..|++.|.+|+++.|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45789999999999999999999999999999864
No 465
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.14 E-value=0.046 Score=56.63 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=31.0
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 579999999999999999999999999999875
No 466
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.14 E-value=0.029 Score=54.44 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=32.1
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
|+++|+|||+|.-|...|..|++.|++|+++++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6789999999999999999999999999999984
No 467
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.13 E-value=0.026 Score=56.09 Aligned_cols=43 Identities=26% Similarity=0.409 Sum_probs=37.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCCcCceeeeC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYT 44 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~~~ 44 (446)
.+++=|||+|.|+|+||..|.|. |-+|.|+|+.+..||.+.-.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~ 48 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGA 48 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCC
Confidence 46788999999999999999986 45999999999999887544
No 468
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.045 Score=48.32 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=53.8
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---------------------------ccccccCC----CCCCeee
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------------------DETHEKQP----GYDNMWL 246 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---------------------------~~~~~~~~----~~~~v~~ 246 (446)
.+|+|||+|+.|.-.|..+++..-+-.++..--. .+.+.++. +.+.-..
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~ 88 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEII 88 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceee
Confidence 5899999999999999999887655444432110 11111111 1122222
Q ss_pred ccceeEEccCCc--EEecCCcEEeecEEEEecCccCCCCCC
Q 013303 247 HSMVERANEDGT--VVFRNGRVVSADVIMHCTGYKYNYPFL 285 (446)
Q Consensus 247 ~~~v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l 285 (446)
...|.+++-.+. ..++|...+.+|.||+|||-...--+|
T Consensus 89 tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~ 129 (322)
T KOG0404|consen 89 TETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHL 129 (322)
T ss_pred eeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeec
Confidence 334555543333 556788889999999999987654344
No 469
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.11 E-value=0.047 Score=45.15 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=31.1
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~ 35 (446)
.++|+|||+|-+|-+++..|...|.+ ++|+.|+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 57899999999999999999999986 99999863
No 470
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.09 E-value=0.025 Score=54.36 Aligned_cols=33 Identities=42% Similarity=0.621 Sum_probs=30.9
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||.|..||+.|..|++.|++|+++|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 589999999999999999999999999999854
No 471
>PRK07538 hypothetical protein; Provisional
Probab=95.08 E-value=0.076 Score=53.01 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=30.2
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
+|+|||+|++|+=+|..|++.|.+|+++.+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 69999999999999999999999999999875
No 472
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.04 E-value=0.081 Score=52.43 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=31.0
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 579999999999999999999999999999875
No 473
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.02 E-value=0.038 Score=47.62 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=29.8
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
+.+|+|+|+|.+|..|+..|...|.+++++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4689999999999999999999999999999754
No 474
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.98 E-value=0.031 Score=53.43 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=31.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|.+.|..|++.|++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 589999999999999999999999999999875
No 475
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.97 E-value=0.02 Score=57.91 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=51.9
Q ss_pred CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccc---cccCCCCCCeeeccceeEEccCCcEEecCCcEEeecE
Q 013303 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET---HEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADV 271 (446)
Q Consensus 195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~---~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~ 271 (446)
+++|+|+|+|+|.+|..+|..|++.|.+|+++.+...... ..++.+.+ +.-+..+ . .+...-.+|.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~-------~~~~~~~--~--~~~~~~~~d~ 71 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG-------IELVLGE--Y--PEEFLEGVDL 71 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-------CEEEeCC--c--chhHhhcCCE
Confidence 4689999999999999999999999999999988653111 11111111 1111110 0 0111124899
Q ss_pred EEEecCccCCCCCC
Q 013303 272 IMHCTGYKYNYPFL 285 (446)
Q Consensus 272 vi~atG~~~~~~~l 285 (446)
||.++|..++.|.+
T Consensus 72 vv~~~g~~~~~~~~ 85 (450)
T PRK14106 72 VVVSPGVPLDSPPV 85 (450)
T ss_pred EEECCCCCCCCHHH
Confidence 99999998887754
No 476
>PRK11445 putative oxidoreductase; Provisional
Probab=94.97 E-value=0.08 Score=51.61 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=28.9
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
.|+|||+|++|+-+|..|++. .+|+++.+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 699999999999999999998 8999999865
No 477
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.92 E-value=0.14 Score=49.32 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCCCc
Q 013303 98 RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (446)
Q Consensus 98 ~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~p~ 169 (446)
.+.....+...+.+.+.+.|+. +.++++|+.+...+ +.+. |.+.++ ++.+|.||+|+|.++...
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~--~~~~~~v~~i~~~~-~~~~~v~~~~g-----~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVE--IIEHTEVQHIEIRG-EKVTAIVTPSG-----DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCE--EEccceEEEEEeeC-CEEEEEEcCCC-----EEECCEEEEcCChhhhhc
Confidence 4456688888888888988987 99999999998765 5443 444332 689999999999876543
No 478
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.89 E-value=0.042 Score=52.40 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
|.++|+|||+|.-|...|..|++.|.+|+++.|.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5679999999999999999999999999999995
No 479
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=94.82 E-value=0.057 Score=54.51 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=26.4
Q ss_pred EEEEEecCCcHHHHHHHHhccC---CEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFA---KEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~---~~V~l~~r~~ 230 (446)
+|+|||||..|.=.|..|++.+ .+|+++.+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 5999999999999999999987 7899998865
No 480
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.78 E-value=0.026 Score=55.62 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=30.4
Q ss_pred CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
++|+|||||..|+++|..|++.|.+|+++.+++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999998643
No 481
>PRK06996 hypothetical protein; Provisional
Probab=94.77 E-value=0.07 Score=53.02 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=29.2
Q ss_pred CEEEEEecCCcHHHHHHHHhccC----CEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFA----KEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~----~~V~l~~r~~ 230 (446)
..|+|||+|+.|.-+|..|++.| .+|+++.+.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 47999999999999999999886 4799999864
No 482
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=94.73 E-value=0.039 Score=52.66 Aligned_cols=69 Identities=25% Similarity=0.370 Sum_probs=46.6
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--ccccccCCCCCCe------eeccceeEEccC---CcEEecCCcEE
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DETHEKQPGYDNM------WLHSMVERANED---GTVVFRNGRVV 267 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--~~~~~~~~~~~~v------~~~~~v~~i~~~---~~v~~~dG~~~ 267 (446)
.|+|||+|..|.-+|..|++.|.+|+++.|.-. +..+.++.+.+.. -+...|+.|+.. |-..|.||++.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v 126 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGKEV 126 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCcee
Confidence 499999999999999999999999999999754 3344444444322 122334444322 23567777653
No 483
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.69 E-value=0.042 Score=51.95 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=31.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 689999999999999999999999999999864
No 484
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.68 E-value=0.039 Score=52.03 Aligned_cols=33 Identities=36% Similarity=0.585 Sum_probs=31.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|...|..++..|++|+++|+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 589999999999999999999999999999875
No 485
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=94.67 E-value=0.032 Score=56.95 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=32.3
Q ss_pred CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCc
Q 013303 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV 37 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~ 37 (446)
.+|.+|||||.||...|..|++. ..+|+|+|++...
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 57999999999999999999987 5899999997655
No 486
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.64 E-value=0.051 Score=51.52 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=31.6
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3689999999999999999999999999999864
No 487
>PRK04148 hypothetical protein; Provisional
Probab=94.62 E-value=0.037 Score=45.28 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=30.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~ 36 (446)
++|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 899999999999999999998764
No 488
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.59 E-value=0.045 Score=52.27 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=31.2
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|...|..++..|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999999865
No 489
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.58 E-value=0.21 Score=49.50 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=30.1
Q ss_pred CEEEEEecCCcHHHHHHHHhccC--CEEEEEEecC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV 230 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~ 230 (446)
-.|+|||||.+|+-+|.+|++.. .+|+++.+..
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~ 38 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED 38 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 46999999999999999999998 8999998855
No 490
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.54 E-value=0.055 Score=53.79 Aligned_cols=30 Identities=27% Similarity=0.220 Sum_probs=27.7
Q ss_pred EEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 201 ILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 201 vVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
+|||+|++|+=.|..+++.+.+|+++.+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 589999999999999999999999999765
No 491
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.53 E-value=0.03 Score=49.95 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=33.7
Q ss_pred CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
++.||+|+|||||..|..=+..|.+.|.+|+++....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 3578999999999999999999999999999998765
No 492
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.51 E-value=0.049 Score=51.46 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=31.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
.++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3689999999999999999999999999999864
No 493
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.51 E-value=0.04 Score=54.74 Aligned_cols=42 Identities=24% Similarity=0.519 Sum_probs=33.9
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~ 43 (446)
.+||+|+|.|..-...|..|++.|.+|+.+|+++..||.|..
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 479999999999999999999999999999999999998864
No 494
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.51 E-value=0.041 Score=46.77 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (446)
Q Consensus 194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~ 227 (446)
+..|++|+|||||..|...+..|.+.+.+|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3578999999999999999999999999999994
No 495
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.50 E-value=0.12 Score=51.11 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=27.3
Q ss_pred CEEEEEecCCcHHHHHHHHhccC---CEEEEEEecCC
Q 013303 198 QVVILIGHYASGLDIKRDLAGFA---KEVHIASRSVA 231 (446)
Q Consensus 198 k~VvVVG~G~sg~eia~~l~~~~---~~V~l~~r~~~ 231 (446)
++|+|||+|.||+.+|.+|.+.. ..|.++.+.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 47999999999999999998652 23888877653
No 496
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.36 E-value=0.063 Score=48.92 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.1
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~ 230 (446)
+|+|||+|..|+-.|..|+..|.+|+++.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 58999999999999999999999999999865
No 497
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.35 E-value=0.065 Score=45.13 Aligned_cols=30 Identities=33% Similarity=0.620 Sum_probs=28.7
Q ss_pred EEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (446)
Q Consensus 5 V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~ 34 (446)
|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 799999999999999999999999999985
No 498
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.30 E-value=0.069 Score=45.77 Aligned_cols=34 Identities=26% Similarity=0.560 Sum_probs=29.4
Q ss_pred CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
|++|.+||-|..|...|+.|.+.|++|.++|++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 5799999999999999999999999999999864
No 499
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.27 E-value=0.055 Score=51.26 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=31.1
Q ss_pred CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (446)
Q Consensus 3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~ 35 (446)
++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 689999999999999999999999999999865
No 500
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.25 E-value=0.037 Score=54.90 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=30.2
Q ss_pred EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (446)
Q Consensus 199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~ 231 (446)
+|+|||||.+|+++|..|++.|.+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999986543
Done!